BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] (247 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|154505512|ref|ZP_02042250.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] gi|153794170|gb|EDN76590.1| hypothetical protein RUMGNA_03049 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + +A+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRLKLTVAYDGTNYCGWQIQPNGITVEEVLNRALRKLTGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN L D I ++ V +H R+ +++Y Y I+ + Sbjct: 61 VAVFDSETSIPPERISYALNQRL--PDDIVVIRSEEVSADWHPRYCNSKKTYEYHILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD E M+ AAQ+LVG HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTRYFVSFDLDIEKMKKAAQYLVGTHDFVSFCNVRTDVEDTVRTIYSLDILPV 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R VG+L VG G +T +++ L+A++RK G APP+GL+ Sbjct: 179 GDEITIRIQGNGFLYNMVRIIVGTLVRVGRGFYTPEQVQEILEAKNRKAAGVTAPPQGLF 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVGIEY 244 >gi|125975420|ref|YP_001039330.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|256005284|ref|ZP_05430250.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281419381|ref|ZP_06250396.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|166991160|sp|A3DJK8|TRUA_CLOTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125715645|gb|ABN54137.1| tRNA pseudouridine synthase A [Clostridium thermocellum ATCC 27405] gi|255990720|gb|EEU00836.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 2360] gi|281407001|gb|EFB37264.1| tRNA pseudouridine synthase A [Clostridium thermocellum JW20] gi|316939545|gb|ADU73579.1| tRNA pseudouridine synthase A [Clostridium thermocellum DSM 1313] Length = 244 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ+QKN ++Q +IE+AI +TGE V + GA RTD GVHAL Q Sbjct: 1 MRNVKLIIEYDGTNYHGWQKQKNAKTVQDTIERAIKGLTGEKVDLIGASRTDFGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L D I I VD FHAR+ A + Y Y I Q Sbjct: 61 VANFITNSGIPGDRFSYALNRML--PDDIVIKESQEVDMDFHARYKAKGKRYRYLIYNSQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P AL + R + + LD E+M+ AA + +G HDF+ FRS A + +RTI + Sbjct: 119 FPSALLRHRTYHVSHKLDFESMQRAASYFLGTHDFSAFRSSGSSAKTSVRTITDVSLERE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ + FL+ +R VG+L VG GK + ++ + ++++ RK G AP EGLY Sbjct: 179 DKIVKFEIAGDGFLYNMVRIIVGTLMEVGIGKIRADEIPQIIESRKRKRAGRTAPAEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVYY 244 >gi|210618029|ref|ZP_03291864.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] gi|210149022|gb|EEA80031.1| hypothetical protein CLONEX_04097 [Clostridium nexile DSM 1787] Length = 245 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + KA+ +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTNYCGWQVQPNGITVEEVVNKALKKLTGEDIQVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + ALN L + I I+ V + FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTHTTIPPERISYALNQRL--PEDIVIVKSEEVAEDFHPRYCDCSKTYEYHILNMR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD E MR AA +L+G HDF +F ++ +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYDLDVEKMRKAAGYLIGEHDFVSFCNVRTDVEDTVRTVTELEILKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A+DRK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPEKVKEILEAKDRKAAGVTAPPHGLI 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LAEIRY 244 >gi|331091743|ref|ZP_08340575.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402642|gb|EGG82209.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 245 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +I+ + KA+ +TGE +VV GA RTDSGVHA+ Sbjct: 1 MRRVKLTIAYDGTNYCGWQIQPNGITIEEIVNKALSKLTGEKIVVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+N L + I ++ V FH R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPERVAMAVNRIL--PEDIVVVKSEEVPLDFHPRYCDCEKTYEYHIVNTR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ ++ + + LD + MR A +L+G HDF +F +I S +RT+ ++ Sbjct: 119 IPIPTKRLTNYFVSYELDLDKMREGASYLIGEHDFASFCNIKTDVESTVRTVKELEILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G + +++ L+A++RK G APP GL Sbjct: 179 GEEITIRISGNGFLYNMVRIIVGTLIRVGRGFYEPVQVKEILEAKNRKAAGVTAPPHGLM 238 Query: 241 FDSVEYS 247 + Y+ Sbjct: 239 LMEIRYN 245 >gi|83309340|ref|YP_419604.1| pseudouridylate synthase [Magnetospirillum magneticum AMB-1] gi|123768092|sp|Q2WAT0|TRUA_MAGSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82944181|dbj|BAE49045.1| Pseudouridylate synthase [Magnetospirillum magneticum AMB-1] Length = 256 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 123/247 (49%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +EKA+ + G +H AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K ++++ +VD+ FHARFSA+ R+YLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMK-PKPVAVVAAELVDEDFHARFSAVGRAYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P +LD E M A+ L+G HDF+TFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ K L+A+DR + GP AP GL Sbjct: 180 GEEIRIVAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLV 239 Query: 241 FDSVEYS 247 V YS Sbjct: 240 LTGVSYS 246 >gi|304315974|ref|YP_003851119.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777476|gb|ADL68035.1| tRNA pseudouridine synthase A [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 248 Score = 208 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQ QKN +IQ +I KAI +T E V + G+ RTD+GVHAL Q Sbjct: 5 MRNIVLVIEYDGTNYHGWQIQKNVVTIQETITKAIKKITNEDVDLIGSSRTDAGVHALHQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + ALN+ L I I + D FH+R+SA + Y Y I R+ Sbjct: 65 VANFKTCTNIPTSKIPNALNSVL--PADIVIKDAFEADMDFHSRYSAKGKRYKYIIYNRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K +W I KSLD E MR + ++L G HDF+ F++ SP+RT+ + Sbjct: 123 FSSPILKNYSWHISKSLDVEKMRESLKYLEGTHDFSAFKASGSSVKSPVRTVRDISLKKN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +E + A FL+ +R VG++ VG GK D+++ L +++R G APP+GL+ Sbjct: 183 GFNVEFEIEADGFLYNMVRIIVGTIVDVGLGKINPIDVKEILDSKNRCMAGKTAPPQGLF 242 Query: 241 FDSVEY 246 + Y Sbjct: 243 LTKIYY 248 >gi|15964174|ref|NP_384527.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|307301319|ref|ZP_07581081.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] gi|30913403|sp|Q92SH4|TRUA_RHIME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15073350|emb|CAC41858.1| Probable tRNA pseudouridine synthase A [Sinorhizobium meliloti 1021] gi|306903775|gb|EFN34362.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti BL225C] Length = 247 Score = 208 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 155/247 (62%), Positives = 185/247 (74%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|260589149|ref|ZP_05855062.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082565|ref|ZP_08331690.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260540569|gb|EEX21138.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400543|gb|EGG80173.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 245 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG ++Q + + + TGE + GA RTD+GVHAL Sbjct: 1 MKRVKLTVAYDGTNYCGWQVQPNGITVQEVLNQCLSEFTGENIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I VD FH R+ +++Y YRI+ + Sbjct: 61 VAVFDTEMRMPGDKFSFALNQRL--PEDIRIQKSEEVDADFHPRYVKSQKTYEYRILNCR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ AA +L+G HDF +F Q + +RT+ + Sbjct: 119 FPIPTERFYSHFTYIPLDVDKMKEAASYLIGEHDFKSFCGTGAQVKTTVRTVKEIQIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L +G G + +++ L+A+DRK+ GP AP GL Sbjct: 179 GDRITIRITGEGFLYNMVRIIAGTLMDIGGGLYPPEKMKEILEAKDRKKAGPTAPARGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LMKIQY 244 >gi|307317990|ref|ZP_07597427.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] gi|306896392|gb|EFN27141.1| tRNA pseudouridine synthase A [Sinorhizobium meliloti AK83] Length = 247 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 155/247 (62%), Positives = 185/247 (74%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ NG S+QG+IEKA+ +T E V + GAGRTDSGVHA Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQDNGPSVQGAIEKAVLSLTRETVSIRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW L ALNA+L + +SIL+++ F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKSYTLQNALNAHLALAGERVSILDVAEAPGDFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK LD + M AAQ LVG HDFTTFRS HCQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKPLDHDAMHEAAQRLVGHHDFTTFRSAHCQATSPLRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APP+GL Sbjct: 181 AGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLQAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] gi|254039972|gb|ACT56768.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 247 Score = 207 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ Sbjct: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF Sbjct: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY Sbjct: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|154483152|ref|ZP_02025600.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] gi|149735960|gb|EDM51846.1| hypothetical protein EUBVEN_00853 [Eubacterium ventriosum ATCC 27560] Length = 246 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y GWQ Q NG +++ + KA+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRVRLIIAYDGTNYCGWQVQINGITVEEVLNKALKDLLNEEIAVIGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V +H R+ ++Y Y+I+ R+ Sbjct: 61 VAVFDTETRIPAEKISFALNQRL--PNDIRIQKSDEVPLDWHPRYRDSTKTYEYKILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L++ + LD + M+ AA+++VG HDF +F S Q S +RT+ VN Sbjct: 119 FPDPLQRFYTHFMYMPLDEQKMKEAAEYIVGEHDFASFCSAGSQVDSTVRTVYSLSVNKR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I IR+ FL+ +R VG+L VG G + +++ ++A+DR GP AP GL Sbjct: 179 DDVISIRITGNGFLYNMVRIIVGTLIKVGLGVYPPEHVKEIIEAKDRYVAGPKAPACGLT 238 Query: 241 FDSVEYS 247 +EYS Sbjct: 239 LVGIEYS 245 >gi|71280165|ref|YP_270466.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] gi|123760979|sp|Q47XK4|TRUA_COLP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71145905|gb|AAZ26378.1| tRNA pseudouridine synthase A [Colwellia psychrerythraea 34H] Length = 259 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 142/245 (57%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + IEY+G Y GWQRQ N ++Q +EKA+ + E + V AGRTD+GV+A QV Sbjct: 1 MRYALGIEYDGKNYCGWQRQNNVITVQEKLEKALSKIADEKIEVVCAGRTDTGVNATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ +N +L +++ + VD FHARFSA R+Y Y I + Sbjct: 61 IHFDTEKKRKDTAWTLGVNTHL--PSDVAVAWVKKVDDDFHARFSATARNYRYIIYNKPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A +L+G+HDFT+FR++HCQ+ S +RTI H V G Sbjct: 119 RSAILSHGISHCHFALDENLMQQGADYLLGKHDFTSFRTVHCQSHSAVRTIKHCRVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ VGSL VG + T +++ L A++R G APPEGLYF Sbjct: 179 DYLVVDIKANAFLHHMVRNVVGSLMRVGQSQETPHWMKEVLLAKNRCVAGVTAPPEGLYF 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|325662523|ref|ZP_08151126.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325471219|gb|EGC74444.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL V Sbjct: 4 KRIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD P + ALN L D I I+ V FH R+ ++Y Y II + Sbjct: 64 AVFDSATSIPPERIAMALNQRL--PDDIVIVKSEEVAPDFHPRYCDCEKTYEYHIINTRT 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P+ ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 122 PIPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 182 EEITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLML 241 Query: 242 DSVEY 246 + Y Sbjct: 242 VEIRY 246 >gi|145299467|ref|YP_001142308.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] gi|166228677|sp|A4SNT8|TRUA_AERS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|142852239|gb|ABO90560.1| tRNA pseudouridine synthase A [Aeromonas salmonicida subsp. salmonicida A449] Length = 269 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTHAIRSESAWTLGLNSNL--PPDIAVRWVKEVDETFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D M +A Q L+G DFT+FR+I CQ+ +P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDAALMHLAGQCLLGEQDFTSFRAIGCQSKTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR + GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAELLAAKDRNQAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola sp. JR] gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR] Length = 246 Score = 205 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M M IEY+G+ Y G+Q+Q +N +IQ ++EKA+ +TGE + V GAGRTD+GVHAL Sbjct: 1 MRNIKMTIEYDGTSYHGFQKQADQNLPTIQEALEKALRKLTGEEISVTGAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F +ALN+ L + I + FHA+F A +++Y Y I Sbjct: 61 GQVINFYTESSIPTGNFVRALNSVL--PEDIVAKDAVEAPGDFHAQFWAKKKTYRYTIFN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P + + +P L+ +NMR AA LVG+HDF+ FR+ A S IRT+ +V Sbjct: 119 DTVPSVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDFSAFRAAGSTARSSIRTMYRAEVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G LI + + A FL+ +R G+L +G GK +++ + + DR GP PP+G Sbjct: 179 QEGELIHVYLEANGFLYNMVRIITGTLLYIGQGKLRVEEMKDIIASGDRTLAGPTVPPQG 238 Query: 239 LYFDSVEY 246 L VEY Sbjct: 239 LCLMRVEY 246 >gi|331086292|ref|ZP_08335372.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406058|gb|EGG85581.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 249 Score = 205 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ Y GWQ Q NG +++ I KA+ +TGE + V GA RTDSGVHAL V Sbjct: 4 KRIKLTIAYDGTNYCGWQVQPNGITVEEVINKALCKLTGEDIAVIGASRTDSGVHALGNV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD P + ALN L D I I+ V FH R+ ++Y Y II + Sbjct: 64 AVFDSATSIPPERIAMALNQRL--PDDIVIVKSEEVATDFHPRYCDCEKTYEYHIINTRT 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P+ ++ + + LD E M+ AA +LVG HDF +F ++ Q +RT+ +V G Sbjct: 122 PIPTKRLTNYFVSYDLDVERMQQAADYLVGEHDFVSFCNVRTQVEDTVRTVTELEVLREG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I IR+ FL+ +R VG+L VG G +T +++ L+A+DRK G AP GL Sbjct: 182 EEITIRISGNGFLYNMVRIIVGTLVRVGRGFYTPEKVKEILEAKDRKAAGVTAPAHGLML 241 Query: 242 DSVEY 246 + Y Sbjct: 242 VEIRY 246 >gi|254228474|ref|ZP_04921900.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262393647|ref|YP_003285501.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|151939062|gb|EDN57894.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] gi|262337241|gb|ACY51036.1| tRNA pseudouridine synthase A [Vibrio sp. Ex25] Length = 264 Score = 205 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRKMVAWTMGANAN--MPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAAHCQSRSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGLY Sbjct: 179 NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|295109363|emb|CBL23316.1| pseudouridylate synthase I [Ruminococcus obeum A2-162] Length = 246 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALSDLLGEKIEIMGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD E MR A +L+GRHDF +F Q S +RTI DV Sbjct: 119 FPVPTERLYSYFYHYKLDIEKMREATSYLIGRHDFASFCGTGAQVKSTVRTITGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 179 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|146296772|ref|YP_001180543.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166228689|sp|A4XKB7|TRUA_CALS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145410348|gb|ABP67352.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 244 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q N ++QG IE AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L + ISI + + V F AR+SA +++Y Y I + Sbjct: 61 KANFKTESKIPTEKFPLALNSVL--PNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + P LD +M+ + ++ +G +DF++F S + +S +R I + Sbjct: 119 FRPAILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ R G++ VG G++ TD+ ++++DR + G PP GLY Sbjct: 179 NDCIAIYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|91223605|ref|ZP_01258870.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269966027|ref|ZP_06180119.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] gi|91191691|gb|EAS77955.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01] gi|269829423|gb|EEZ83665.1| tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] Length = 264 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVTRKMVAWTMGANAN--MPSDIAVRWAKEVSDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQFLLGENDFTSFRAAHCQSRSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ + ++ L+A+DRK G A EGLY Sbjct: 179 NYVVIDIKANAFVHHMVRNITGSLIKVGRGEESPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|325265188|ref|ZP_08131914.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324029592|gb|EGB90881.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 263 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTVAYDGTNYCGWQIQPNGITIEEILNKKLSRLTGEEIRVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P L ALN ++ + I I+ V +H R+ ++Y Y I+ + Sbjct: 61 VAVFDTETTIPPDRLAYALNQ--RMPEDIVIVKSEEVPADWHPRYCDTVKTYEYLILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + LD + MR AA +L G HDF +F ++ +RTI D+ Sbjct: 119 IPDPTRRLTTYFVSYDLDLQKMRRAAGYLSGEHDFASFCNVRTNVEDTVRTIYELDILEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R VG+L VG G +T ++ L+A+DR+ G APP GL Sbjct: 179 GEEITIRIRGNGFLYNMVRIIVGTLLRVGRGFYTPEQVKDILEAKDRQAAGVTAPPHGLR 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIGIEY 244 >gi|23016535|ref|ZP_00056290.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 256 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ G S+QG +E+A+ +TG ++ AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTPFNGWQRQDKGLSVQGVLEQAVEKLTGSPCTINAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R++ + ALN ++K + + D FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VAHVDLPRDYPADTVRDALNYHMKPKPVAVVAAELVGD-DFHARFSAVGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLAL++ RAW +P SLD E M A+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 120 APLALDQHRAWWVPVSLDAEAMAEGARRLLGHHDFTTFRASECQAKSPMKTLDVLDVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH Q+R+ VG+LKLVG+GKW+ D+ +AL A DR + GP AP GL Sbjct: 180 GEEIRIIAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMARALAACDRTKGGPTAPAAGLC 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVSY 245 >gi|117619854|ref|YP_857188.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166228676|sp|A0KLN7|TRUA_AERHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117561261|gb|ABK38209.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 269 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +EKA+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQEELEKALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTDANRAEGAWTLGLNSNL--PPDIAVRWVKQVDEGFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +++D + M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETIDADLMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIKANAFLHHMVRNITGSLLLVGQGLQPVEWIAEVLAARDRNLAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|153816265|ref|ZP_01968933.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|317501758|ref|ZP_07959944.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088721|ref|ZP_08337631.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|145846448|gb|EDK23366.1| hypothetical protein RUMTOR_02514 [Ruminococcus torques ATCC 27756] gi|316896791|gb|EFV18876.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407244|gb|EGG86747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 271 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +++ + KA+ +T E V V GA RTD+GVHA Sbjct: 1 MRRIKLTVAYDGTDYCGWQIQPNGITVEEVLNKALSDLTKETVKVIGASRTDAGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P + A+NA L D I ++ V +H R+ ++Y Y I+ R+ Sbjct: 61 VAVFDTKSPIPPERIAYAVNALL--PDDIVVVRSEEVGCDWHPRYQNSIKTYEYTIVNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + +W + LD ++M+ AA++ +G HDF TF S+H + +R ID DV Sbjct: 119 MPDPLRRRDSWFVSFPLDIDDMKKAARYFIGEHDFKTFCSVHTGVKTTVRRIDSLDVEKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+IR+ FL+ +R G+L VG G + +++++ L+ ++R G APP+GL Sbjct: 179 GERIKIRISGNGFLYNMVRIIAGTLVEVGRGAFAPSEVKEMLEQKERGRAGATAPPQGLV 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LLGIVY 244 >gi|20808627|ref|NP_623798.1| tRNA pseudouridine synthase A [Thermoanaerobacter tengcongensis MB4] gi|24212532|sp|Q8R7Y7|TRUA_THETN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20517260|gb|AAM25402.1| Pseudouridylate synthase (tRNA psi55) [Thermoanaerobacter tengcongensis MB4] Length = 240 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 +IIEY+G+ Y GWQ QKN ++Q +EKAI VTGE V + G+ RTD+GVHAL QVA+F Sbjct: 2 LIIEYDGTNYHGWQYQKNAITVQEVLEKAIEKVTGEKVNLIGSSRTDTGVHALYQVANFK 61 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P L ALNA L D + ++ VDK FHAR+SA + Y Y I+ RQ P+ Sbjct: 62 TKTKIPPEKLPYALNAVL--PDDVVVVKAKEVDKSFHARYSARSKRYRYLILNRQFPMPT 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W +P LD E M+ AA G HDF+ F++ + +P++TI V G+LI+ Sbjct: 120 MRNYCWHVPYPLDVEAMKKAAFFFRGTHDFSAFKASGNKKVNPVKTIFDLTVEKEGDLIK 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I V A FL+ +R VG+L VG GK + ++ ++++DR + G APP+GLY + Sbjct: 180 IEVEADGFLYNMVRIIVGTLVYVGLGKIKAGEIPAIIESKDRTKAGITAPPQGLYLVRIV 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|153813476|ref|ZP_01966144.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] gi|149830420|gb|EDM85512.1| hypothetical protein RUMOBE_03896 [Ruminococcus obeum ATCC 29174] Length = 250 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + A+ + GE + + GA RTD+GVHAL Sbjct: 5 MKRVGLVVAYDGTNYSGWQIQPNGITIQGVLNDALTDLLGEKIEIMGASRTDAGVHALGN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 65 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + MR A +L+GRHDF +F Q S +RT+ D+ Sbjct: 123 FPVPTERLYSYFYHYKLDVDKMREATSYLIGRHDFASFCGTGAQVKSTVRTLTGIDIWRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++K L A DR GP AP GL Sbjct: 183 GDIVTIRVKGEGFLYNMVRIIAGTLIQVGNGQYPPERVKKILDACDRSVSGPTAPAHGLT 242 Query: 241 FDSVEY 246 +E+ Sbjct: 243 LMGIEF 248 >gi|27365335|ref|NP_760863.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37680609|ref|NP_935218.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|320155720|ref|YP_004188099.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] gi|31340462|sp|Q8CWK3|TRUA_VIBVU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559737|sp|Q7M7J4|TRUA_VIBVY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27361482|gb|AAO10390.1| tRNA pseudouridine synthase A [Vibrio vulnificus CMCP6] gi|37199357|dbj|BAC95189.1| tRNA pseudouridine synthase A [Vibrio vulnificus YJ016] gi|319931032|gb|ADV85896.1| tRNA pseudouridine synthase A [Vibrio vulnificus MO6-24/O] Length = 264 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ +S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTDYFGWQRQREVASVQEKLEKALSKVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTNVERKMVAWTMGANANL--PKDIAVRWAKAVPDEFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR++ CQ+ SP R + H +V G Sbjct: 119 RPGILGSGVSHYHGELDEKKMHEAGQYLLGENDFTSFRAVQCQSLSPFRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +VG G+ ++ L+A+DRK GP A EGLY Sbjct: 179 HYVVIDIKANAFVHHMVRNITGSLIMVGRGEQDPEWIKWLLEAKDRKLAGPTAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|307943162|ref|ZP_07658507.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] gi|307773958|gb|EFO33174.1| tRNA pseudouridine synthase A [Roseibium sp. TrichSKD4] Length = 271 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ NG S QG IE+AI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTVEYDGRPFCGWQRQSNGPSAQGVIERAIKAFSGEDVTIGGAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W + ALN + D + IL F ARFSAIRRSY YRI R Sbjct: 61 VAHADLSEDWPEKTVMGALNFH-CQPDPVVILACEKKHDGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E G AW + LD + M AAQ VG HDFTTFR CQA SP++T+++F V Sbjct: 120 PPLTHELGLAWHVKHELDADAMNEAAQEFVGHHDFTTFRHSRCQAKSPVKTLENFTVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I +RSFLH Q+RS VG+L+LVG+G+WT++D+ +AL A+DRK CGP+AP +GLY Sbjct: 180 GEIILAECSSRSFLHNQVRSMVGTLRLVGEGRWTASDVGEALAARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 245 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N +I+G + + + + E +V+ GA RTD+GVHA Sbjct: 1 MKRVLLKVAYDGTNYCGWQVQPNAKTIEGVLNECLTKLLKEEIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALNA+L + I I V+ FH R+ R++Y YRI Sbjct: 61 VAVFDTNSRIPAEKLSYALNAHL--PEDIVIQASMEVESDFHPRYCDTRKTYEYRIYNAT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + A + LD E MR AA +L+G HDF +F S + Q RTI + Sbjct: 119 FPLPTNRRYAHFVYYDLDLEAMRKAASYLIGEHDFVSFCSANTQVKDTTRTIYDIQIEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IR+ FL+ +R G+L VG +W + +AL +DR+ GP AP +GL Sbjct: 179 RELIVIRIKGNGFLYNMVRIIAGTLIQVGTHQWEPERVLEALTKKDRQAAGPTAPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|269962161|ref|ZP_06176515.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] gi|269833245|gb|EEZ87350.1| tRNA pseudouridine synthase A [Vibrio harveyi 1DA3] Length = 264 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANAN--MPSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPFRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|153834426|ref|ZP_01987093.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156975370|ref|YP_001446277.1| tRNA pseudouridine synthase A [Vibrio harveyi ATCC BAA-1116] gi|166229849|sp|A7MS76|TRUA_VIBHB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148869197|gb|EDL68225.1| tRNA pseudouridine synthase A [Vibrio harveyi HY01] gi|156526964|gb|ABU72050.1| hypothetical protein VIBHAR_03101 [Vibrio harveyi ATCC BAA-1116] Length = 264 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANAN--MPSDIAVRWAVEVNDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYIVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKSLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|260769069|ref|ZP_05878003.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|260617099|gb|EEX42284.1| tRNA pseudouridine synthase A [Vibrio furnissii CIP 102972] gi|315180810|gb|ADT87724.1| tRNA pseudouridine synthase A [Vibrio furnissii NCTC 11218] Length = 264 Score = 202 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ +S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTQYYGWQRQREVNSVQEELEKALSVIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTATRKMIAWTMGANANL--PKNIAVRWAKEVPDEFHARFSATARRYRYVIYNHMF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD M A Q L+G +DFT+FR++HCQ+ SP R I H +V Sbjct: 119 RPGILATGVSHYHGELDVARMHQAGQFLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQEPEWIQWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|56418673|ref|YP_145991.1| tRNA pseudouridine synthase A [Geobacillus kaustophilus HTA426] gi|62901182|sp|Q5L3Q7|TRUA_GEOKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56378515|dbj|BAD74423.1| pseudouridylate synthaseI [Geobacillus kaustophilus HTA426] Length = 258 Score = 202 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA Q Sbjct: 3 QRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 63 VIHFDTPLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P SL M A + L G HDFT+F S +RT+ +V + Sbjct: 121 ERDVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTSIEDRVRTMYRAEVKAD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LWRVYY 246 >gi|150395284|ref|YP_001325751.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] gi|166229839|sp|A6U5I6|TRUA_SINMW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150026799|gb|ABR58916.1| tRNA pseudouridine synthase A [Sinorhizobium medicae WSM419] Length = 247 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 152/247 (61%), Positives = 186/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+EY+G+ Y GWQRQ NG S+QG+IEKA+ +TGE V V GAGRTDSGVHA Q Sbjct: 1 MPRFRLIVEYDGTDYVGWQRQDNGPSVQGAIEKAVLSLTGETVRVRGAGRTDSGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W P L ALNA+L + +SIL + F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTRAWKPYTLQNALNAHLSLAGERVSILEVEEAAADFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD + M AAQ L+G HDFTTFRS +CQA+SP+RT+D DV Sbjct: 121 RSPLALEARRAWWVPKALDHDAMHEAAQRLLGHHDFTTFRSANCQATSPMRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF GSLKLVG+ KWT +L+ AL+A+DRK CGP+APP+GL Sbjct: 181 TGDLIEIRASAQSFLHNQIRSFAGSLKLVGESKWTPDNLQAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMRVDY 247 >gi|209886648|ref|YP_002290505.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] gi|229557998|sp|B6JJP6|TRUA_OLICO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209874844|gb|ACI94640.1| tRNA pseudouridine synthase A [Oligotropha carboxidovorans OM5] Length = 245 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 131/246 (53%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQ Q NG S+QG++E A+ + G V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLLIEYDGTPFCGWQYQDNGPSVQGALEDAVAALAGTHVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+L+ I +L+ IV + F +RFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKSYRTDQVRDALNAHLR-PHPIGVLSAEIVPETFESRFSAVKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ RAW I ++LD M AAQ LVGRHDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDLHRAWRIARTLDVAAMHEAAQVLVGRHDFTTFRDTECQAKSPEKTLDQLDVTRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT D+ AL A+DR CGP+APPEGLY Sbjct: 180 GDAVSIVTSARSFLHSQVRSMVGSLVWVGHGRWTIADMRNALAARDRTACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|291549528|emb|CBL25790.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 256 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q +I+G + +AI +T E ++V GA RTD+GVHA Sbjct: 1 MRRIRLRVAYDGTAYCGWQVQPEVPTIEGELNQAISRLTKEEIIVIGASRTDAGVHAKGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I ++ V+ +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESTIPADRFAYALNPLL--PEDIVVVASDEVEADWHPRHCDTEKTYEYKILNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + L+ E MR AA++L G HDF +F ++H Q +RTI +V Sbjct: 119 FPDPMRRRDTYHVSFDLNLEKMREAAEYLKGEHDFKSFCNVHTQVEDTVRTIYDLEVEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI IRV FL+ +R G+L VG G + L+A+DR+ G PP+GL Sbjct: 179 EELITIRVRGNGFLYNMVRILAGTLIGVGRGAIAPEQIPAILEAKDRQAAGMTVPPQGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVKIDY 244 >gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL] gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL] Length = 244 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR I + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRHIYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|28898964|ref|NP_798569.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|260365288|ref|ZP_05777845.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|260878838|ref|ZP_05891193.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|260896240|ref|ZP_05904736.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|260899991|ref|ZP_05908386.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|31340461|sp|Q87MP1|TRUA_VIBPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28807183|dbj|BAC60453.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus RIMD 2210633] gi|308088841|gb|EFO38536.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi|308094227|gb|EFO43922.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi|308107376|gb|EFO44916.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] gi|308115414|gb|EFO52954.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] gi|328474496|gb|EGF45301.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 10329] Length = 264 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANAN--MPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii 177R1B] Length = 244 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTNSKIPTDKFPLALNSVL--PGDISIKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYHYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551] gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319] Length = 246 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+ Y+G+ + G+Q Q N ++Q IE + + + V ++ +GRTD+ VHA Q Sbjct: 1 MKRLKCIVAYDGTHFSGYQVQPNKRTVQLEIEAVLEKMHNKKVPIYASGRTDTNVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALN+ L D I + N+ VD FHAR+ + Y Y I+ + Sbjct: 61 VIHFDTNLNIPCDKWKKALNSML--PDDIVMKNVCEVDAHFHARYDVTSKEYRYHILRGE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P LD M+ A +L+G HDFT+F S + IRTI D+ Sbjct: 119 DRNPFTRSYAYHYPYPLDYSKMKKAITYLLGTHDFTSFCSARTEVEDKIRTIYKIDMYEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + R V FL+ +R VG+L VG G+ ++ L+++ R G AP +GLY Sbjct: 179 NSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPDAIKDILESKSRPRAGKTAPSQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LWRVFY 244 >gi|330829261|ref|YP_004392213.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] gi|328804397|gb|AEB49596.1| tRNA pseudouridine synthase A [Aeromonas veronii B565] Length = 269 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ+ S+Q +E A+ + V + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSRYFGWQRQREVISVQAELETALSRIANHPVSIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LN+ L I++ + VD+ FHARFSA R Y Y I Sbjct: 61 IHFDTEANRAEGAWTLGLNSNL--PPDIAVRWVKQVDESFHARFSATARRYRYVIYNHNY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ ++++ E M A Q L+G HDF+TFR++ CQ+++P R + H V+ G Sbjct: 119 RPAILGSGVSHYHETINAELMHQAGQSLLGEHDFSTFRAVACQSNTPWRNVTHLCVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ GSL LVG G + + L A+DR GP A GLY Sbjct: 179 PYIVLDIRANAFLHHMVRNITGSLLLVGQGLKPVEWIAEVLAAKDRNLAGPTAKAGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|222147430|ref|YP_002548387.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] gi|254789600|sp|B9JQX0|TRUA_AGRVS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221734420|gb|ACM35383.1| tRNA pseudouridine synthase A [Agrobacterium vitis S4] Length = 259 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 141/247 (57%), Positives = 179/247 (72%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITR 119 VAH DL+R+W+P L ALNA+L + + + F ARFSA++R YLYRI++R Sbjct: 61 VAHVDLLRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRIMSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + LALE RAW + K LD E M AAQ LVG HDFTTFRS+HCQA SP+RT+D DV+ Sbjct: 121 PSRLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+GK T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] gi|254789602|sp|B9MKC1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM 6725] Length = 244 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAVEAPLDFSARYSARQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|323483257|ref|ZP_08088647.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323691247|ref|ZP_08105522.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323403355|gb|EGA95663.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323504587|gb|EGB20374.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 341 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLTVAYDGTAYCGWQIQPNGVTIEEVLNKALTGLLKEPVTVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L D I + V FH R + ++Y Y+I+ R+ Sbjct: 61 VAVFDTESRIPGDKICFALNQRL--PDDIRVQASEEVPLSFHPRKANCTKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LE+ + +LD E M+ AA LVG HDF +F ++ QA +RTI DV+ Sbjct: 119 ISMPLERLYSHFCYFNLDVEKMKQAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLDVSKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R G+L VG G + +E+ L+A+DR GP P GL Sbjct: 179 GDMITIRISGSGFLYNMVRIITGTLVKVGLGVYPPEHMEEILEARDRSAAGPTIPAVGLT 238 Query: 241 FDSVEY 246 S+EY Sbjct: 239 LVSLEY 244 >gi|261417639|ref|YP_003251321.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|319765297|ref|YP_004130798.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] gi|261374096|gb|ACX76839.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC61] gi|317110163|gb|ADU92655.1| tRNA pseudouridine synthase A [Geobacillus sp. Y412MC52] Length = 258 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHAL 58 M R II Y+G+ + G+Q Q ++QG +E+ + + V V +GRTD+GVHA Sbjct: 1 MTKRIKCIIAYDGTHFSGYQIQPGKRTVQGELEEVLRRMHKGKGVRVAASGRTDAGVHAY 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 61 GQVIHFDTSLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWT 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P L + M A + G HDFT+F S +RTI V Sbjct: 119 AAERDVFRRHYCAWHPYPLHMDAMNEALRLFCGTHDFTSFCSAKTTIEDRVRTIYRAKVK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EG Sbjct: 179 VDGPMLEFRFVGSGFLYNMVRIMVGTVLEIGQGKRSPADISTLLAAKDRRLAGPTAPAEG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWRVYY 246 >gi|303240936|ref|ZP_07327447.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302591522|gb|EFL61259.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q N ++Q ++EKAI+ +TGE++ ++G+ RTD GVHA Q Sbjct: 1 MKNVKLIIEYDGTNYHGWQSQSNAKTVQETVEKAIYGLTGEVININGSSRTDQGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L + I I V FHAR+ A + Y Y I Sbjct: 61 VANFFTKSNIPHDRFSYALNRML--PEDIIIRKSEEVSMDFHARYCAKGKKYRYLIYNSS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+ + R++ + +LD ++M+ A G HDF+ F++ + +RTI +++ Sbjct: 119 FPSAIFRNRSYHVSHNLDMDSMKKAIPFFKGTHDFSAFKATGSSVKTSVRTIFDVNLSRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V FL+ +R VG+L VG G+ + ++ +++ DRK G APP+GLY Sbjct: 179 EDNIWFEVSGDGFLYNMVRIMVGTLVDVGMGRIKAEEIPGIIESCDRKRAGRTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVYY 244 >gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis 2002] gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis 2002] Length = 244 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAIEVPLDFSARYSARQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRTCEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|315122856|ref|YP_004063345.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496258|gb|ADR52857.1| tRNA pseudouridine synthase A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 247 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 203/247 (82%), Positives = 222/247 (89%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MIRYC+IIEY+GSGY GWQRQKNG SIQG IEKAIFLVTGE + V+GAGRTDSGVHALRQ Sbjct: 1 MIRYCLIIEYDGSGYVGWQRQKNGVSIQGEIEKAIFLVTGESMTVYGAGRTDSGVHALRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDLVREWVP LCKALNA+L IS+ ISIL L +VD++FHARFSAIRRSYLYRIITRQ Sbjct: 61 VAHFDLVREWVPEKLCKALNAHLNISNDISILELCVVDEKFHARFSAIRRSYLYRIITRQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALEKGRAW PK LDCE MR+AAQHL+G+HDFTTFRS+ CQA SPIRTID D+N Sbjct: 121 APLALEKGRAWWFPKDLDCEMMRVAAQHLIGKHDFTTFRSVQCQALSPIRTIDRLDINRL 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++IEIRVVARSFLHTQIRSFVGSLKLVGD KWTS DL+KAL+AQDRK CGPL+P EGLY Sbjct: 181 GDMIEIRVVARSFLHTQIRSFVGSLKLVGDRKWTSDDLQKALKAQDRKACGPLSPSEGLY 240 Query: 241 FDSVEYS 247 FDSVEYS Sbjct: 241 FDSVEYS 247 >gi|312877809|ref|ZP_07737759.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] gi|311795435|gb|EFR11814.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus 6A] Length = 244 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTNSKIPTDKFPLALNSVL--PGDISVKDAVEVPLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLVIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] gi|254789606|sp|C0ZIL2|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599] Length = 244 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++ Y+G+ + G+Q Q + ++QG IE A+ VTGE + V G+GRTD+GVHA Q Sbjct: 1 MKRLRCVLAYDGTDFSGFQVQPDQVTVQGEIEAALNRVTGEDIQVFGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD LN L S I + VD FHARF + Y Y I Sbjct: 61 VIHFDTASNIPMDKWRFVLNNQLPDSIVIRT--VEEVDASFHARFDVQVKEYRYCIDNNP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD + M+ AA +LVG HDFT+F S +RT+ V Sbjct: 119 VADVFRHRYADHVRFPLDVDAMQQAAHYLVGEHDFTSFCSAKTYVEDKVRTVYGLSVEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + FL+ +R VG+L VG GK +L + L A DR++ G AP +GL Sbjct: 179 GDEVWVTCRGNGFLYNMVRIIVGTLVEVGQGKRNPAELREILAACDREKAGKTAPAKGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 MWEVVY 244 >gi|225573074|ref|ZP_03781829.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] gi|225039560|gb|EEG49806.1| hypothetical protein RUMHYD_01265 [Blautia hydrogenotrophica DSM 10507] Length = 245 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +IQG + + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRVGLIVAYDGTNYCGWQVQPNGITIQGELNRCLSELLGEEIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I + FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTETRMPGEKISYALNQRL--PEDIRIQLSEEMPMDFHPRYCDSVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ ++ LD + MR A +L+GRHDF +F Q S +RTI +V F Sbjct: 119 FQIPTERLYSYFYHYKLDEKKMREATSYLIGRHDFASFCGAGAQVKSTVRTIRSVEVERF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ +++ L A+DR+ GP AP +GL Sbjct: 179 GDMVTIRISGEGFLYNMVRIIAGTLIEIGNGQYPPERMQEILDARDREWAGPTAPAKGLT 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LLGIQY 244 >gi|119775285|ref|YP_928025.1| tRNA pseudouridine synthase A [Shewanella amazonensis SB2B] gi|166229832|sp|A1S7J9|TRUA_SHEAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119767785|gb|ABM00356.1| pseudouridylate synthase [Shewanella amazonensis SB2B] Length = 261 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS ++GWQRQ +S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSKFYGWQRQAEVNSVQAELERALSIVANEPIEVQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N +L D I++ V+ FHARFSA R Y Y I Sbjct: 61 VHFDTNAVRKEGAWTLGVNVHL--PDDIAVRWAMPVNDDFHARFSATARRYRYVIFNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D E M AAQ L+G DFT+FR+I CQ+++P R + V+ G Sbjct: 119 RPGILRKGVSHYHGDIDVERMHDAAQALIGERDFTSFRAIGCQSNTPFRNVHKVSVSRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + L+A+DR + A P GLY Sbjct: 179 MYIVVDIQANAFLHHMVRNIVGSLLEIGLGNQPLDWMATLLEAKDRSQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|167759245|ref|ZP_02431372.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] gi|167663119|gb|EDS07249.1| hypothetical protein CLOSCI_01592 [Clostridium scindens ATCC 35704] Length = 248 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ Y GWQ Q NG +++ + K + +TGE + V GA RTDSGVHAL Sbjct: 1 MKRIKLTIAYDGTDYCGWQIQPNGITVEEILNKKLKKLTGEDIHVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIITR 119 VA FD + ALN L D I I++ V +H R+ ++Y Y I Sbjct: 61 VAVFDTESSIPAERMAYALNQRL--PDDIVIVSSKEVPLDWHPRYQDEILKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L++ + + ++ E MR A +L+G HDF +F ++ +RT+ + Sbjct: 119 PVQNPLKRRYSAFVSFPMNVEKMREGAAYLLGEHDFVSFCNVRTSVEDTVRTVKELMIEQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I IR+ FL+ +R G+L VG G + T +++ L+A++R + G APPEGL Sbjct: 179 EGPDITIRITGNGFLYNMVRIIAGTLIRVGRGFYEPTKVKEILEARERTQAGVTAPPEGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TLVCIEY 245 >gi|238916297|ref|YP_002929814.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871657|gb|ACR71367.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 253 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q +I+ ++KAI +TGE V V GA RTD+GVHA Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN +L S I V FH R R++Y YRI+ Sbjct: 61 VAVFDTESTIPGDRFTFALNRFLPDSIVIQDSW--EVSGDFHPRHCNTRKTYEYRILNTV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++ W + S+D E M+ AA ++VG HDF +F + QA S +RTI +V Sbjct: 119 VPLPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I IR+ FL+ +R G+L VG G++ +++ L+A+DR G APP+GL Sbjct: 179 GSEIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVGIEY 244 >gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis 108] gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis 108] Length = 244 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTEYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L ISI + V F AR+SA +++Y Y I + Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISIKDAVEVPLNFSARYSAKQKTYKYLIYNKN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S +A + IR + + + Sbjct: 119 SRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKSFCSADSEAKTTIRRVYNSYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR + G PP GLY Sbjct: 179 NECIAIYITANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTKAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVVY 244 >gi|172056172|ref|YP_001812632.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] gi|229470753|sp|B1YH83|TRUA_EXIS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171988693|gb|ACB59615.1| tRNA pseudouridine synthase A [Exiguobacterium sibiricum 255-15] Length = 249 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+Y+G+ Y G+Q Q NG +IQ +EK + + V V G+GRTD+ VHA Q Sbjct: 1 MRRFKCTIQYDGTDYSGYQVQPNGLTIQEVLEKTLGRMHKHPVKVIGSGRTDARVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P + KALN L D I + + V F AR+ + YR R+ Sbjct: 61 VIHFDTELSIAPASMVKALNTLL--PDDIRVRDCKEVASDFEARYDVV--GKEYRYFVRR 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ LIP SLD +R+ HLVG HDF++F + + +RTI ++ Sbjct: 117 TENAFRRHQSVLIPYSLDVAQIRLGLAHLVGTHDFSSFCVAKTETDNRVRTIYEAELIEQ 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R FL+ QIR VG+L VG G++ D+++ L+A+DR G APP GLY Sbjct: 177 GEELIFRFQGSGFLYNQIRIMVGTLLDVGRGRFAPDDIKRMLEAKDRNVAGVTAPPHGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LWEVFY 242 >gi|240948735|ref|ZP_04753107.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] gi|240296951|gb|EER47529.1| tRNA pseudouridine synthase A [Actinobacillus minor NM305] Length = 262 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSTVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V + FHARFSA R Y Y I R+ Sbjct: 61 VHFETDANRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNRKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q+L+G +DF++FR+ CQ+ +P R I H +V+ G Sbjct: 119 RSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 AYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|260773232|ref|ZP_05882148.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] gi|260612371|gb|EEX37574.1| tRNA pseudouridine synthase A [Vibrio metschnikovii CIP 69.14] Length = 264 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ++ S+Q +EKA+ ++ V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYFGWQRQRDVISVQEKLEKALSIIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L I++ +V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERNMAAWTMGANANL--PKDIAVRWAKVVADDFHARFSATARRYRYVIYNHAY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M++A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ Sbjct: 119 RPGILSSGVSHYHPELDVQRMQLAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVSRHE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G+ +E L A+DRK A EGLY Sbjct: 179 RYVVVDIKANAFVHHMVRNIVGSLIEVGRGEKEPQWIEWLLAAKDRKLAAATAKAEGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis OB47] Length = 244 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+GYFGWQ+Q N +IQG+IE+AI +TGE V + G+GRTD GVHAL Q Sbjct: 1 MRNILLTIEYDGTGYFGWQKQPNKKTIQGTIEEAIKKLTGEEVNLIGSGRTDRGVHALNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + ALN+ L IS+ + V F AR+SA +++Y Y I ++ Sbjct: 61 KANFKTSSKIPTDKFPLALNSVL--PGDISVKDAIEVSLDFSARYSAKQKTYKYLIYNKK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AL + A+ P LD + M+ A ++ +G +DF +F S+ ++ + +R I + + Sbjct: 119 SRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKSFCSVDSESKTTVRRIYNAYLTFE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ R G++ VG GK D+ ++++DR G PP GLY Sbjct: 179 NECIAIYLTANGFLYNMARIIAGTILDVGAGKLKPMDIPLIIESKDRTLAGKTLPPWGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVAY 244 >gi|220934425|ref|YP_002513324.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] gi|219995735|gb|ACL72337.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. HL-EbGR7] Length = 259 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY+GSG+ GWQ Q G ++Q +E+A+ V V V AGRTD+GVHA Q Sbjct: 1 MMRIALGVEYDGSGFCGWQTQLQGRAVQACVEQALSRVANHPVSVVCAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD N +L IS+L VD F ARFSA R Y Y I+ R Sbjct: 61 VIHFDTESVRTARSWVLGGNTHL--PPEISLLWAKEVDADFSARFSARSRRYRYVILNRW 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M A Q L+G DFT+FR++ CQA SP+RT+ V Sbjct: 119 VRPGVLHRKVSWHHPPLDAERMHAAGQRLLGEWDFTSFRAVGCQAKSPVRTLLSLSVTRR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + V A +FLH +R+ G L VG+G+ + + L A+DR G APP GLY Sbjct: 179 GDFIYLDVHANAFLHHMVRNIAGVLMAVGEGERPVEWVSEVLHARDRTLGGVTAPPHGLY 238 Query: 241 FDSVEY 246 VEY Sbjct: 239 LVHVEY 244 >gi|269102116|ref|ZP_06154813.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162014|gb|EEZ40510.1| tRNA pseudouridine synthase A [Photobacterium damselae subsp. damselae CIP 102761] Length = 261 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ YFGWQRQ+ S+Q +EKA+ + E V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYFGWQRQREVDSVQERLEKALAKIANEPVDVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +NA+L I++ + V FHARF+A R Y Y I Sbjct: 61 VHFDVNVNRKMAAWTMGVNAHL--PSDIAVRWAAEVSDDFHARFTATARRYRYVIYNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V+ G Sbjct: 119 RPAILSSGVSHYHGDLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 NYVIIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|257464802|ref|ZP_05629173.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] gi|257450462|gb|EEV24505.1| tRNA pseudouridine synthase A [Actinobacillus minor 202] Length = 262 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ++ S+Q +E+A+ +V V V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQESVESVQQKLEEALSIVANSPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + C NA+L D I++ V + FHARFSA R Y Y I R+ Sbjct: 61 VHFETEAKRPLQAWCFGTNAHL--PDDIAVKWAVEVPEDFHARFSATARRYRYIIFNRKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q+L+G +DF++FR+ CQ+ +P R I H +V+ G Sbjct: 119 RSAILPKGVSHYHVDLDHEKMHEAGQYLLGENDFSSFRAAKCQSHTPWRNIHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 AYIIVDIQANAFVHHMVRNIVGSLIEVGQGNQPPEWIKWLLEQKDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|297528514|ref|YP_003669789.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] gi|297251766|gb|ADI25212.1| tRNA pseudouridine synthase A [Geobacillus sp. C56-T3] Length = 258 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R II Y+G+ + G+Q Q ++QG E+ + + G V V +GRTD+GVHA Q Sbjct: 3 TRIKCIIAYDGTHFSGYQIQPGKRTVQGEFEEVLRRMHKGTKVRVAASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD KALNA L D I + + D FHARFSA + Y Y++ T Sbjct: 63 VIHFDTSLSLSSEQWKKALNAQL--PDDIVVRFVQEADADFHARFSAKAKEYRYKVWTAA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P SL M A + L G HDFT+F S +RT+ +V + Sbjct: 121 ERDVFRRHYCAWHPYSLHISAMNEALRLLHGTHDFTSFCSAKTLIEDRVRTMYRAEVKAD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++E R V FL+ +R VG++ +G GK + D+ L A+DR+ GP AP EGLY Sbjct: 181 GPMLEFRFVGSGFLYNMVRIIVGTVLEIGQGKRSPADISMLLAAKDRRLAGPTAPAEGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LWRVYY 246 >gi|253579808|ref|ZP_04857076.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848807|gb|EES76769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 246 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG ++QG + + + GE + GA RTD+GVHA+ Sbjct: 1 MKRIGLVVAYDGTNYCGWQTQPNGITVQGVLNDTLSELLGEKIETIGASRTDAGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTNTRIPGEKISYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + LD + M+ A +L+G+HDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYTYFYHYKLDVDKMKAATSYLIGQHDFASFCGAKAQVKTTIRTVTGIDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IRV FL+ +R G+L VG+G++ ++ L+A +R+ GP AP +GL Sbjct: 179 GDIVTIRVTGTGFLYNMVRIISGTLIEVGNGQYPPERVKTILEACNREMAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|118589718|ref|ZP_01547123.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] gi|118437804|gb|EAV44440.1| tRNA pseudouridine synthase A [Stappia aggregata IAM 12614] Length = 266 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 155/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+A +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAAKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + D + IL+ + + + F ARFSAIRRSY YRI R Sbjct: 61 VCHVDLSKDWDARTVMGALNFH-CQPDPVVILDAAEMHEGFDARFSAIRRSYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++ F V Sbjct: 120 PPLTHQLGLAWHVKVHLDADAMHAAAQEFVGHHDFTTFRHTRCQAKSPEKTLEEFRVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + +RSFLH Q+RS VGSL+LVG+GKW D+ KAL A+DR CGP+AP +GLY Sbjct: 180 GEFVIAECASRSFLHNQVRSMVGSLRLVGEGKWGPGDITKALAARDRNACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|59712303|ref|YP_205079.1| tRNA pseudouridine synthase A [Vibrio fischeri ES114] gi|197334265|ref|YP_002156517.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] gi|62901138|sp|Q5E455|TRUA_VIBF1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690294|sp|B5FFN7|TRUA_VIBFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59480404|gb|AAW86191.1| pseudouridylate synthase I [Vibrio fischeri ES114] gi|197315755|gb|ACH65202.1| tRNA pseudouridine synthase A [Vibrio fischeri MJ11] Length = 262 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ++ +S+Q +EKA+ +V E + VH AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGAEYYGWQRQRDVNSVQEELEKALTIVANEPIEVHCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD NA L I++ V++ FHARF+A R Y Y I + Sbjct: 61 VHFDTTSSRKLAAWMMGANANL--PKNIAVRWAKEVNEDFHARFTATARRYRYIIYNNRL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGHGVSHYHDALDANLMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EGLY Sbjct: 179 DFIVIDIKANAFVHHMVRNITGSLIEVGKGKQKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1] Length = 258 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IINFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|83859280|ref|ZP_00952801.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] gi|83852727|gb|EAP90580.1| tRNA pseudouridine synthase A [Oceanicaulis alexandrii HTCC2633] Length = 253 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+QG++E A + G V+GAGRTDSGVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFVGWQRQDNGPSVQGALEAAAAKLDGGPREVYGAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK I+++ V +FHARF A RR Y+YR+ R+ Sbjct: 61 VAHVDLEKDLPADKVRDAINHHLK-PHPIAVVEAVRVTDEFHARFKAHRRGYIYRLHARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L +G+ W + + LD E M AAQHLVG HDFTTFR CQA SP++++D V Sbjct: 120 APLTLTRGQVWRVYQPLDVEAMHTAAQHLVGTHDFTTFRDSQCQADSPVKSLDKIAVFHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + V A SFLH Q+RS VGSL VG GKWT D + AL A DR CGP+APP+GLY Sbjct: 180 GEEIHVTVEAISFLHRQVRSIVGSLVEVGLGKWTPEDFKAALDAADRSRCGPVAPPDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LSLVAY 245 >gi|254501121|ref|ZP_05113272.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] gi|222437192|gb|EEE43871.1| tRNA pseudouridine synthase A [Labrenzia alexandrii DFL-11] Length = 272 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 119/246 (48%), Positives = 157/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQ N S+Q IE+AI +GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGRPFSGWQRQANAPSVQAVIERAIKAFSGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALN + D + IL+ + + F ARFSAIRR+Y YRI R Sbjct: 61 VCHADLSKQWPTKTVMGALNFH-CQPDPVVILDCEEMHEGFDARFSAIRRAYRYRIHNRL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL + G AW + LD + M AAQ VG HDFTTFR CQA SP +T++HF V Sbjct: 120 QPLTHQLGLAWHVKHELDADAMHQAAQEFVGHHDFTTFRHSRCQAKSPEKTLEHFSVYRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +RSFLH Q+RS VG+L+LVG+ +W D+ AL+A+DRK CGP+AP +GLY Sbjct: 180 GDFVIAECSSRSFLHNQVRSMVGTLRLVGEDRWGPGDITNALKARDRKACGPVAPADGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|208779289|ref|ZP_03246635.1| tRNA pseudouridine synthase A [Francisella novicida FTG] gi|208745089|gb|EDZ91387.1| tRNA pseudouridine synthase A [Francisella novicida FTG] Length = 258 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIYKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|319952056|ref|YP_004163323.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319420716|gb|ADV47825.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 250 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G Y GWQ+Q N ++QG +E A+ + +++ GAGRTD+GVHA Sbjct: 1 MRYFIRFSYFGKHYHGWQKQPNAVTVQGVLEDALSKLLANEIILMGAGRTDAGVHAKELY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LNA+L I+IL++ V + HARF+A+ R+Y Y I Q Sbjct: 61 AHFDFEEIPNKENFVFRLNAFL--PKDIAILDVFQVPEDAHARFNAVARTYEYWI--VQQ 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A LI LD M AAQ + DF F + ++ + + + Sbjct: 117 KNPFLTNHAHLIKYPLDINKMNEAAQVFLSHIDFECFSKSNTAVNTFNCDVKYAEWKVTD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK ++++ L+++DR + G AP +GLY Sbjct: 177 GILVFTITADRFLRNMVRAIVGTLLEVGLGKIDISNVKAILKSKDRSKAGASAPAKGLYL 236 Query: 242 DSVEY 246 SV Y Sbjct: 237 TSVLY 241 >gi|56708110|ref|YP_170006.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670581|ref|YP_667138.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|224457202|ref|ZP_03665675.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|254370594|ref|ZP_04986599.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254874909|ref|ZP_05247619.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|62901197|sp|Q5NG36|TRUA_FRATT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123169371|sp|Q14HI8|TRUA_FRAT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56604602|emb|CAG45654.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320914|emb|CAL09037.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC198] gi|151568837|gb|EDN34491.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis FSC033] gi|254840908|gb|EET19344.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159310|gb|ADA78701.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis NE061598] Length = 258 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|167036834|ref|YP_001664412.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039553|ref|YP_001662538.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|256752665|ref|ZP_05493517.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300915196|ref|ZP_07132511.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307725120|ref|YP_003904871.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|320115256|ref|YP_004185415.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687621|sp|B0K5S6|TRUA_THEPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687718|sp|B0KCN3|TRUA_THEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166853793|gb|ABY92202.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X514] gi|166855668|gb|ABY94076.1| tRNA pseudouridine synthase A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748485|gb|EEU61537.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus CCSD1] gi|300888920|gb|EFK84067.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X561] gi|307582181|gb|ADN55580.1| tRNA pseudouridine synthase A [Thermoanaerobacter sp. X513] gi|319928347|gb|ADV79032.1| tRNA pseudouridine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 244 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFKTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FQMPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY Sbjct: 179 EDFINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIIY 244 >gi|330446609|ref|ZP_08310261.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490800|dbj|GAA04758.1| tRNA pseudouridine synthase A [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 261 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPIEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDVNIDRKMVAWTMGANANL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGTGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L+ +DR G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIKWLLEQKDRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|254374311|ref|ZP_04989793.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] gi|151572031|gb|EDN37685.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3548] Length = 258 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PKDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|325291802|ref|YP_004277666.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] gi|325059655|gb|ADY63346.1| tRNA pseudouridine synthase A [Agrobacterium sp. H13-3] Length = 266 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 148/247 (59%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ YFGWQRQ NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYFGWQRQDNGPSVQGALEAAVRSLTGETVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L + + +S+++++ V + F ARFSA+RR YLYRII R Sbjct: 61 VAHVDLSRDWAPYKLRNALNAHLAMAKEAVSVIDVTAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +A LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQASSP+RT+D DV Sbjct: 121 KARLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQASSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LK+ G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKMAGEGSMTPEDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida U112] gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida GA99-3549] gi|166228699|sp|A0Q6C2|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112] gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549] gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. novicida FTE] Length = 258 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGRNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F E + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSDAERPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|291548427|emb|CBL21535.1| pseudouridylate synthase I [Ruminococcus sp. SR1/5] Length = 245 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +IQG + + + GE + GA RTD+GVHAL Sbjct: 1 MKRVGLVVAYDGTKYSGWQTQPNGITIQGVLNDTLSELLGEKIETIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V+ FH R+ ++Y YRI+ R+ Sbjct: 61 VAVFDTESRIPGEKFSYALNQRL--PEDIRIQLSEEVEPDFHPRYCDSEKTYEYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ ++ LD + M+ A +L+GRHDF +F Q + IRT+ DV Sbjct: 119 FPVPTERLYSYFYHYKLDVDKMKEATSYLIGRHDFASFCGSGAQVKTTIRTVTSMDVWRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ IR+ FL+ +R G+L +G+G++ ++K L+A DR GP AP +GL Sbjct: 179 GDMVTIRISGTGFLYNMVRIISGTLIEIGNGQYPPERMDKILKACDRGAAGPTAPAQGLT 238 Query: 241 FDSVEY 246 +E+ Sbjct: 239 LMGIEF 244 >gi|262402660|ref|ZP_06079221.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] gi|262351442|gb|EEZ00575.1| tRNA pseudouridine synthase A [Vibrio sp. RC586] Length = 264 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDLKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|258627102|ref|ZP_05721898.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] gi|258580620|gb|EEW05573.1| tRNA pseudouridine synthase A [Vibrio mimicus VM603] Length = 264 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|144900443|emb|CAM77307.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1] Length = 245 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 125/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+QG +E AIF G V AGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYHGTPFVGWQRQDNGISVQGEVEAAIFRFCGLETTVTAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R+ + ALN +LK I++ + IV FHARFSA+ RSYLYRI+ R+ Sbjct: 61 VIHFDLDRDVSAERVQGALNYHLK-PHPIAVRAVEIVPDDFHARFSALGRSYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+A+E+ R W + L+ E M+ AAQHL+GRHDFT+FR+ CQA SP +T+D V Sbjct: 120 APVAIERERVWWVSVPLNAEAMQEAAQHLLGRHDFTSFRAAACQAQSPDKTLDLLQVTRT 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + ARSFLH Q+R+ VG+LKLVG+GKW ++ AL+A+DR GP APP+GLY Sbjct: 180 DEEIRMIAEARSFLHHQVRNMVGTLKLVGEGKWHPDRVKAALEARDRAAAGPTAPPDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVVY 245 >gi|205372037|ref|ZP_03224854.1| tRNA pseudouridine synthase A [Bacillus coahuilensis m4-4] Length = 251 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 134/247 (54%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++Y+G+ Y G+Q Q N +IQG IEK + + G+ + + +GRTD+GVHA+ Q Sbjct: 4 MRRIKCTVQYDGTWYAGYQVQPNSKTIQGEIEKVLEKIHGKPIRISASGRTDAGVHAIGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ++ N+ L + I ++++ V FH+RF +I + Y Y++ Sbjct: 64 VFHFDTDTKFPVEKWLPIFNSQL--PNDIVVIHVEEVAGSFHSRFGSIEKEYRYKVYRAP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ +P SL + M A+++L+G HDFT+F S + +RTI + Sbjct: 122 HKSPFLIHHAYHVPHSLSVQKMEEASRYLLGTHDFTSFCSAKTEVEDKVRTIFTISIEEE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N++ +V FL+ +R +G L VG GK ++++ L+A+DR+ G AP +GLY Sbjct: 182 ENMLTFSLVGNGFLYNMVRIIIGVLIEVGQGKRAPIEVKEILEAKDRRAGGKTAPAQGLY 241 Query: 241 FDSVEYS 247 V+YS Sbjct: 242 LYRVKYS 248 >gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] gi|197298014|gb|EDY32563.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC 29176] Length = 297 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q N ++I+G + + +TG+ V V GA RTD+GVHA Sbjct: 26 MKRIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTDAGVHARGN 85 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P A+NA L + I +++ V +H R ++Y YR++ ++ Sbjct: 86 VAVFDTESSIPPERFLYAVNALL--PEDIVVVDSCEVAADWHPRHCNTEKTYEYRVLNQK 143 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + LD E MR AA +L G HDF +F ++H +RTI +V Sbjct: 144 LPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYRLEVIRE 203 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I RV FL+ +R G+L VG G ++ L+A+DR+ G PP+GL Sbjct: 204 ENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTVPPQGLT 263 Query: 241 FDSVEY 246 ++Y Sbjct: 264 LMKIDY 269 >gi|195940683|ref|ZP_03086065.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|295098046|emb|CBK87136.1| pseudouridylate synthase I [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 270 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 HRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPISVFCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 70 VHFDTTAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 128 RPAVLSQGVTHFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|163795438|ref|ZP_02189405.1| Pseudouridylate synthase [alpha proteobacterium BAL199] gi|159179424|gb|EDP63955.1| Pseudouridylate synthase [alpha proteobacterium BAL199] Length = 248 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 120/247 (48%), Positives = 169/247 (68%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ NG+++QG+IE A+F +G+ V V GAGRTD+GVHA Q Sbjct: 1 MTRYRLTVEYDGAPFVGWQRQDNGATVQGAIEDAVFAFSGQRVEVAGAGRTDTGVHAEGQ 60 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + V + A+NA+L+ +++++ S+ FHARFSAI RSY Y I+ R Sbjct: 61 VAHIDLATDRFDAVTVMNAINAHLR-PLPVAVVSASVASPDFHARFSAIWRSYRYVIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLAL+ GRAW + LD M A+ L+G HDFT+FR++HCQ+ SP++T+D V+ Sbjct: 120 RAPLALDLGRAWSVLAPLDVAAMSAGAERLIGHHDFTSFRAVHCQSKSPMKTLDVLQVSR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH Q+R+ VG+L+LVG+GKW D+ AL+A+DR GP AP +GL Sbjct: 180 HGERIVVEARARSFLHHQVRNMVGTLRLVGEGKWQPDDVTAALKARDRVAAGPTAPADGL 239 Query: 240 YFDSVEY 246 +V Y Sbjct: 240 TLTAVGY 246 >gi|317497062|ref|ZP_07955389.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316895607|gb|EFV17762.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA L + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNARL--PEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYITMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIQIEY 244 >gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437] Length = 258 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + G+QRQ ++QG++E+ + VTGE + V GAGRTD+GVHAL Q Sbjct: 1 MGKIKLTVAYDGTDFSGFQRQPGKRTVQGTLEETLTRVTGETISVTGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + LNA L + + V ++FHAR+ A + Y Y + T Sbjct: 61 VIHFETSVPIPTERWVRLLNASL--PRDLLVTQAKEVPREFHARYDACWKHYRYTLDTCP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + P L + M+ AA+HL G HDFT+F + Q R++ H +V Sbjct: 119 IPDLFRRRYQTHYPHPLSRDRMQRAARHLTGTHDFTSFSAARAQVKDRRRSLYHCEVKEV 178 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ I VV FL+ +R G+L +G GK ++ L+A+DR G PPEGL Sbjct: 179 NPGVLSIEVVGDGFLYHMVRILTGTLVEIGAGKIPPDEIRGILKAKDRSAAGKTFPPEGL 238 Query: 240 YFDSVEYS 247 V Y+ Sbjct: 239 VMVEVGYT 246 >gi|167767771|ref|ZP_02439824.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|167710510|gb|EDS21089.1| hypothetical protein CLOSS21_02306 [Clostridium sp. SS2/1] gi|291558888|emb|CBL37688.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 252 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+GY GWQ Q N +++G + K I +TGE + V GA RTDSGVHAL Sbjct: 1 MKRVKLIVAYDGTGYCGWQVQPNEITVEGVLNKHISELTGEDIKVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + KALNA L + I I + V +H RF R++Y Y + Sbjct: 61 VAVFDTESRIPGEKMAKALNARL--PEDIIIQDSKEVPLDYHPRFQDTRKTYEYTFYNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E M+ AA + +G H F + S Q +S +R I DV Sbjct: 119 YDNPVTSRHHHFVYVPLDVEKMKEAASYFLGEHCFISMCSSKAQVTSYVREIYECDVTQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I++RV FL+ +R G+L VG GK +++ L +++R GP P +GL Sbjct: 179 GRYIKMRVTGSGFLYNMVRLMAGTLLEVGRGKQEPQWVKEILASKERVTPGPKLPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LIQIEY 244 >gi|261211961|ref|ZP_05926247.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] gi|260838569|gb|EEX65220.1| tRNA pseudouridine synthase A [Vibrio sp. RC341] Length = 264 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ S V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWASSVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHCELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|328676060|gb|AEB28735.1| tRNA pseudouridine synthase A [Francisella cf. novicida 3523] Length = 258 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQAELEKALSKIANRNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL V+ F++RF+AI R+Y Y I Sbjct: 61 VVNFHSDADRPLSAWQRGANALL--PHDIKILAAQEVNDDFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKLVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|315651854|ref|ZP_07904857.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] gi|315485856|gb|EFU76235.1| tRNA pseudouridine synthase A [Eubacterium saburreum DSM 3986] Length = 245 Score = 198 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +++ + +AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITVEEILNRAISKLTGEEIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD A+N L D I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 VAVFDTNVRMAADKFAFAINQRL--PDDIRIQYSDEVESDWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRT+ +V Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTVFSLEVLQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I I V FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMITIVVRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKERKFAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|163801903|ref|ZP_02195800.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] gi|159174411|gb|EDP59215.1| tRNA pseudouridine synthase A [Vibrio sp. AND4] Length = 264 Score = 198 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQQELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVSRKMVAWTMGANAN--MPSDIAVRWAVEVSDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNMMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPAWIKSLLDAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|258622013|ref|ZP_05717042.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] gi|258585766|gb|EEW10486.1| tRNA pseudouridine synthase A [Vibrio mimicus VM573] Length = 264 Score = 198 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R I H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|227820646|ref|YP_002824616.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] gi|254764861|sp|C3MF26|TRUA_RHISN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|227339645|gb|ACP23863.1| tRNA pseudouridine synthase A [Sinorhizobium fredii NGR234] Length = 247 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 154/247 (62%), Positives = 186/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+GS Y GWQRQ+NG S+QG+IEKA+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRYRLTVEYDGSDYVGWQRQENGPSVQGAIEKAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL REW + ++ +SIL+ + V +F ARFSAIRR YLYRII+R Sbjct: 61 VAHLDLTREWKTHTLRNALNAHLALAAERVSILDAAEVPPEFDARFSAIRRHYLYRIISR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE RAW +PK+LD E M AAQHLVG HDFTTFRS HCQA+SP+RTID DV Sbjct: 121 RSPLALEARRAWWVPKTLDHEAMHEAAQHLVGHHDFTTFRSAHCQANSPLRTIDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF GSLKLVG+GKWT DL+ AL+A+DRK CGP+APPEGL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGSLKLVGEGKWTPDDLKTALEARDRKACGPVAPPEGL 240 Query: 240 YFDSVEY 246 +F V+Y Sbjct: 241 FFMQVDY 247 >gi|262165233|ref|ZP_06032970.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] gi|262024949|gb|EEY43617.1| tRNA pseudouridine synthase A [Vibrio mimicus VM223] Length = 264 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|283796516|ref|ZP_06345669.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291075930|gb|EFE13294.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|295092580|emb|CBK78687.1| pseudouridylate synthase I [Clostridium cf. saccharolyticum K10] Length = 368 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + +A+ + E + V GA RTDSGVHA+ Sbjct: 1 MKRIRLTVAYDGTNYCGWQLQPNGITIEEVLNRALSELLKEEIQVVGASRTDSGVHAMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD P +C ALN L + + + V FH R + ++Y Y+I+ R+ Sbjct: 61 IAVFDTESRIPPEKICFALNQRL--PEDVRVQKSEEVPLTFHPRKANCVKTYEYKILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + L + LD E MR AA LVG HDF +F ++ QA +RTI V+ Sbjct: 119 IDMPLNRLYCHFCYFDLDVEKMRRAAAFLVGEHDFKSFCTVRTQAEETVRTIYSLTVDRG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L +G G W +E+ L+A+DR GP P +GL Sbjct: 179 ADDVIVIRISGSGFLYNMVRIITGTLVKIGMGVWPPEYMEEILEARDRAAAGPTIPAKGL 238 Query: 240 YFDSVEY 246 S+EY Sbjct: 239 TLVSMEY 245 >gi|90579292|ref|ZP_01235102.1| tRNA pseudouridine synthase A [Vibrio angustum S14] gi|90440125|gb|EAS65306.1| tRNA pseudouridine synthase A [Vibrio angustum S14] Length = 261 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFDINIDRKMVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAVHCQSRSPWRNLMHLKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEENPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|299132601|ref|ZP_07025796.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] gi|298592738|gb|EFI52938.1| tRNA pseudouridine synthase A [Afipia sp. 1NLS2] Length = 245 Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats. Identities = 130/246 (52%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ + GWQ Q NG S+QG++E A+ +TG V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPFCGWQYQDNGPSVQGALEDAVMAMTGSRVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+ I +L+ IV F ARFSA++R Y+YRI R+ Sbjct: 61 VAHIDLEKTYRADRVRDALNAH-VRPHPIGVLSAEIVPDTFEARFSALKRHYIYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ GRAW + + LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDAGRAWRVARPLDVAAMNEAAQVLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+WT+ D+ KAL A++R CGP+APP+GLY Sbjct: 180 GDTVNIVTSARSFLHSQVRSMVGSLVWVGHGRWTAADMRKALDARNRAACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|302388745|ref|YP_003824566.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] gi|302199373|gb|ADL06943.1| tRNA pseudouridine synthase A [Thermosediminibacter oceani DSM 16646] Length = 243 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY+G+ Y GWQ+Q N S+Q +EKAI+ +TGE V + GAGRTD+GVHA QV Sbjct: 1 MNVKILLEYDGTNYHGWQKQNNALSVQEVLEKAIYALTGERVSIIGAGRTDAGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L A+N+ L + I++ V FHAR+SA + Y Y I Sbjct: 61 ANFRTNTRIPVERLPYAINSKL--PEDIAVKGAEAVPDDFHARYSAKAKVYTYSIYNAPF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L + ++ P LD E MR AA+ +G HDF FR+ + +R I DV G Sbjct: 119 PSPLLRRYSYFFPLPLDVEAMRRAAKAFIGVHDFAAFRASGSSVKTSVRNITRLDVKKCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ I V A FL+ +R G+L VG GK ++ ++++DR+ G P GL Sbjct: 179 KLLTIEVEADGFLYNMVRIIAGTLLEVGTGKKDPEEIPSIIESRDRERAGVTLPAHGLCL 238 Query: 242 DSVEY 246 + V Y Sbjct: 239 EKVIY 243 >gi|323499722|ref|ZP_08104688.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] gi|323315224|gb|EGA68269.1| tRNA pseudouridine synthase A [Vibrio sinaloensis DSM 21326] Length = 264 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q ++EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQEVKSVQEALEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L +++ V + FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PSDVAVRWAKEVPEDFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ +E LQA+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIEWLLQAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|209694634|ref|YP_002262562.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] gi|238057726|sp|B6EIW6|TRUA_ALISL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208008585|emb|CAQ78760.1| tRNA pseudouridine synthase A [Aliivibrio salmonicida LFI1238] Length = 262 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 138/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQ QK+ +S+Q +EKA+ +V E + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYDGASYHGWQSQKDVTSVQEELEKALMVVANEPIEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA L I++ + V++ FHARF+A R Y Y I + Sbjct: 61 VHFDTNSVRKLPVWMVGVNANL--PKNIAVRWVKEVNEDFHARFTATARRYRYIIFNNRQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ ++LD + M A Q+L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 119 RPAIFSHGVSHYHETLDADLMHEAGQYLLGENDFTSFRAVRCQSRTPWRNLIHLKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG GK ++ L+A+DRK G A EGLY Sbjct: 179 DFIVIDIKANAFVHHMVRNITGSLIEVGRGKQKPEWVQWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 IDVDY 243 >gi|134301921|ref|YP_001121890.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] gi|166228700|sp|A4IXW8|TRUA_FRATW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134049698|gb|ABO46769.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. tularensis WY96-3418] Length = 258 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q S+EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQESLEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|254473752|ref|ZP_05087147.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] gi|211957138|gb|EEA92343.1| tRNA pseudouridine synthase A [Pseudovibrio sp. JE062] Length = 302 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 160/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I+Y+G + GWQRQ NG ++QG IE+AI TGE V + GAGRTDSGVHA Q Sbjct: 27 MPRYKITIDYDGRPFVGWQRQDNGPTVQGVIERAIKSFTGETVTIGGAGRTDSGVHATGQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALN + D ++IL+ F ARFSAIRR Y Y+I R Sbjct: 87 VAHLDLSKDWPAETVKNALNFH-AQPDPVAILDCEKAGLGFDARFSAIRRHYRYKIANRL 145 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL ++G AW + LD E M AAQ L+G HDFTTFR CQA SP +T++ V Sbjct: 146 EPLTHDRGLAWYVKPELDAEAMNEAAQVLLGHHDFTTFRHTRCQAKSPWKTMERICVYRQ 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + +RSFLH Q+RS VGSL+LVG+G+WT DL+ AL+A DRK CGP+A PEGLY Sbjct: 206 GYHVFLECSSRSFLHNQVRSMVGSLRLVGEGRWTKDDLKAALEACDRKACGPVAVPEGLY 265 Query: 241 FDSVEY 246 V+Y Sbjct: 266 LTQVDY 271 >gi|110802389|ref|YP_699630.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110682890|gb|ABG86260.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 244 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIEIE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|110799502|ref|YP_697060.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|168205200|ref|ZP_02631205.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168211871|ref|ZP_02637496.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|110674149|gb|ABG83136.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|170663322|gb|EDT16005.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|170710156|gb|EDT22338.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 244 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|15887719|ref|NP_353400.1| tRNA pseudouridine synthase A [Agrobacterium tumefaciens str. C58] gi|42559844|sp|Q8UIC9|TRUA_AGRT5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15155280|gb|AAK86185.1| tRNA pseudouridine synthase I [Agrobacterium tumefaciens str. C58] Length = 266 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 146/247 (59%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G+ Y+GWQRQ+NG S+QG++E A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGTPYYGWQRQENGPSVQGALEAAVRSLTGESVSIRGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R+W P L ALNA+L + + +++L+ + V + F ARFSA+RR YLYRII R Sbjct: 61 VAHIDLSRDWEPYKLRNALNAHLAMAGEAVAVLDAAAVTEDFDARFSALRRHYLYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ LALE RAW + K LD E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 121 KSRLALEHKRAWWVSKDLDHERMHEAAQMLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEIR A+SFLH QIRSF G+LKL G+G T D+ AL+A+DRK CGP+APP+GL Sbjct: 181 NGDLIEIRATAQSFLHNQIRSFAGTLKLAGEGGMTPDDVRAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|187931655|ref|YP_001891639.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] gi|238691562|sp|B2SGK2|TRUA_FRATM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187712564|gb|ACD30861.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. mediasiatica FSC147] Length = 258 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+ +DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEVKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|254369374|ref|ZP_04985386.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] gi|157122324|gb|EDO66464.1| hypothetical protein FTAG_00346 [Francisella tularensis subsp. holarctica FSC022] Length = 258 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|86356072|ref|YP_467964.1| tRNA pseudouridine synthase A [Rhizobium etli CFN 42] gi|86280174|gb|ABC89237.1| tRNA pseudouridine synthase A protein [Rhizobium etli CFN 42] Length = 267 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 154/247 (62%), Positives = 191/247 (77%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+ + +SIL+++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVAAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDDEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|327191110|gb|EGE58158.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CNPAF512] Length = 266 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 154/247 (62%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|254506845|ref|ZP_05118984.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] gi|219550130|gb|EED27116.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus 16] Length = 264 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQQDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L I++ V ++FHARF+A R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PGDIAVRWAKEVPEEFHARFTATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M +AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSTGVSHYHGELDEKKMHLAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L A+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPEWIQWLLGAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|295691224|ref|YP_003594917.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] gi|295433127|gb|ADG12299.1| tRNA pseudouridine synthase A [Caulobacter segnis ATCC 21756] Length = 247 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQDVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + + + + +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLEKDWPAQTVFNALNAHLTHEAVSIL-SAEVAEGDWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHLVG HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDAEAMHAAAQHLVGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTPDDVKAALEAKDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|114568998|ref|YP_755678.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] gi|122316778|sp|Q0ASJ7|TRUA_MARMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114339460|gb|ABI64740.1| tRNA pseudouridine synthase A [Maricaulis maris MCS10] Length = 249 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 170/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ N S+Q S+E+A + G V+V+GAGRTDSGVHAL Q Sbjct: 1 MPRYRITIEYDGRPFSGWQRQDNAPSVQESLERAAEKLDGAPVLVYGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++ + A+N +LK D ++++ + V FHARFSA RR YLYR+I R+ Sbjct: 61 VAHLDLAKDLSTDKVRDAINYHLK-PDPVAVIEAARVSDDFHARFSATRRHYLYRMIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+ W + + LD E M AAQ L+G+HDFTTFR CQA SP++++D V+ + Sbjct: 120 APLTLDRGQVWRVTRKLDAEAMHHAAQALLGQHDFTTFRDAQCQAESPVKSLDAISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +++ ARSFLH Q+RS VGSL VG GKW++ D ++AL A DR CGP+AP +GLY Sbjct: 180 GEEVQLTCSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLY 239 Query: 241 FDSVEY 246 +V+Y Sbjct: 240 LTAVDY 245 >gi|262171995|ref|ZP_06039673.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] gi|261893071|gb|EEY39057.1| tRNA pseudouridine synthase A [Vibrio mimicus MB-451] Length = 264 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L +++ + V FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDVAVRWATAVPDDFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ ++R A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLITVGRGEQKPEWIQWLLEQKNRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|226322882|ref|ZP_03798400.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] gi|225208668|gb|EEG91022.1| hypothetical protein COPCOM_00654 [Coprococcus comes ATCC 27758] Length = 256 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 119/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KAI +TGE + V GA RTDSGVHA Sbjct: 9 MRRIRLTVAYDGTNYCGWQIQPNGITIEEVLNKAICKLTGEEIQVIGASRTDSGVHARGN 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALN L I ++ VD +H R+ ++Y Y II + Sbjct: 69 IAVFDTESRIPAERFSYALNQRL--PKDIVVVKSDEVDLNWHPRYQDTLKTYEYHIINTK 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ E+ + + LD MR A +L G HDF F I A + +RTI + Sbjct: 127 VPIPTERLYNYFVSFDLDVGQMRRGAAYLEGEHDFAPFCCIRTNAKTTVRTITDLQILQS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I IR+ FL+ +R G L VG G + +++ L+ +R APP+GL Sbjct: 187 GEHITIRITGNGFLYNMVRIIAGVLVRVGRGFYEPEKVKELLEGGERTREAVTAPPQGLC 246 Query: 241 FDSVEY 246 + Y Sbjct: 247 LMEIRY 252 >gi|254418055|ref|ZP_05031779.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] gi|196184232|gb|EDX79208.1| tRNA pseudouridine synthase A [Brevundimonas sp. BAL3] Length = 247 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 116/246 (47%), Positives = 157/246 (63%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y G+Q Q + ++QG++E AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTLEYDGTAYNGFQAQADQPTVQGAVEAAILAFSGERIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + A+NA+L D + D +HARFSA R YLYRI+ R+ Sbjct: 61 VIHADLERDWPVDTVLNAVNAHLIKQDVCVLSAEYAPDPDWHARFSATGRGYLYRILNRR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LE+ R W + KSLD E M AAQ LVG HDFTTFR + CQ+ SP++T+D V+ F Sbjct: 121 PQPVLERDRVWHVKKSLDAEAMHQAAQVLVGLHDFTTFRDVGCQSKSPVKTLDVARVSRF 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS G+L VG G+WT+ D++ AL+A+DR CGP+AP GLY Sbjct: 181 GEEVHLVFQARSFLHRQVRSMAGTLVEVGLGRWTAHDVKAALEAKDRARCGPVAPSAGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LSGVRY 246 >gi|18311353|ref|NP_563287.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|42559846|sp|Q8XHV5|TRUA2_CLOPE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|18146037|dbj|BAB82077.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 244 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIINSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|217977314|ref|YP_002361461.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] gi|254789643|sp|B8ENG8|TRUA_METSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217502690|gb|ACK50099.1| tRNA pseudouridine synthase A [Methylocella silvestris BL2] Length = 248 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 138/246 (56%), Positives = 173/246 (70%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++IEY+G+ + GWQRQ NG S+Q +IE A+ TGE V +HGAGRTD+GVHA Q Sbjct: 1 MPRFKLLIEYDGAPFVGWQRQANGFSVQEAIETALGGFTGESVAIHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D R+W P +L A NA+L+ + I+IL VD +F ARFSA+RR YLY+II R+ Sbjct: 61 VAHVDFSRDWRPDVLRDAANAWLR-PNPIAILKAERVDDEFSARFSAVRRHYLYKIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L LE GR W I +SLD M AAQ L+G HDF+TFR CQA SP+RT++ FDV Sbjct: 120 ASLTLEAGRCWAIRRSLDAGAMHEAAQTLLGFHDFSTFRDSECQAESPLRTLERFDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G IEI V ARSFLH+Q+RS VGSL VG GKW D+ +AL A+DR+ CG +APPEGLY Sbjct: 180 GENIEIHVAARSFLHSQVRSMVGSLAHVGSGKWRVEDMAEALAAKDRRRCGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LMQVDY 245 >gi|261252353|ref|ZP_05944926.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] gi|260935744|gb|EEX91733.1| tRNA pseudouridine synthase A [Vibrio orientalis CIP 102891] Length = 264 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQ+ S+Q +E+A+ +V + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTQYYGWQRQREVKSVQEKLERALSVVANQPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTATRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ + + L +DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQQPEWIAELLAVKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM 16841] Length = 247 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + + + + GE + V GA RTDSGVH++ Sbjct: 1 MKRVKLIVAYDGTNYCGWQVQPNGITIEQVLNENLSKLLGEEITVTGASRTDSGVHSMGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + ALN L + I + + V +H R+ R++Y YRI+ R Sbjct: 61 VAIFDTETRMPADKISFALNQRL--PEDIVVQDSCEVPSDWHPRYQVSRKTYEYRILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + LD + M+ AA +LVG HDF +F ++ Q + RTI +V Sbjct: 119 FRMPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFCAVGAQVKTTTRTIYSCEVEKD 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G+ ++ + L +DR GP AP GL Sbjct: 179 GNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGEMAPDEIPQILGKKDRTAAGPTAPAHGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TMMGIEY 245 >gi|54114177|gb|AAV29722.1| NT02FT0202 [synthetic construct] Length = 258 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI Y + I Y G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MINYLLQIGYFGKNYCGWQRQSHSPSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNADRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|262276338|ref|ZP_06054147.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] gi|262220146|gb|EEY71462.1| tRNA pseudouridine synthase A [Grimontia hollisae CIP 101886] Length = 264 Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS ++GWQRQ+ S+Q +EKA+ + + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGSQFYGWQRQREVPSVQEHLEKALSKIANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +N +L DTI++ V +FHARFSA R Y Y I Sbjct: 61 VHFDIEGSRPLRAWTMGVNTHL--PDTIAVRWAKEVPDEFHARFSATARRYRYIIYNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M A Q+L+G +DFT+FR++ CQ+ SP R + H +V G Sbjct: 119 RPGILRHGVSHYHGELDETLMHEAGQYLLGENDFTSFRAVQCQSKSPWRNVHHINVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG + ++ L+A+DR A EGLY Sbjct: 179 RFVIIDIKANAFVHHMVRNITGSLIVVGRKEQKPEWIKWLLEAKDRNLAAATAKAEGLYL 238 Query: 242 DSVEY 246 VEY Sbjct: 239 VEVEY 243 >gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 248 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+GS Y GWQ Q N +IQ I KA+ + G+ VV+HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGSNYSGWQVQPNAITIQEEIMKALKKLEGKDVVIHGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + R L A+N+ L I+I++ V FHAR+SAI + Y+Y I + Sbjct: 61 VATFLMERNIPVERLPLAMNSNL--PKDITIIDAKEVPMDFHARYSAIGKRYIYHIYESR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + ++ I LD M A++ L+G HDF F S +RTI + S Sbjct: 119 YRSAILRNYSYHINYKLDRSKMMEASKLLIGTHDFRGFMSNGSSVEDTVRTIKSLEFKSD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + FL+ +R G+L +G G +EK L+ +DR G APP+GL+ Sbjct: 179 GENIYMIIEGDGFLYNMVRIITGTLVQIGAGNKPLEQIEKILKTKDRSLAGHTAPPQGLF 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDKVFY 244 >gi|331002224|ref|ZP_08325743.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] gi|330411318|gb|EGG90734.1| tRNA pseudouridine synthase A [Lachnospiraceae oral taxon 107 str. F0167] Length = 245 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ+Q NG +I+ + AI +TGE + V GA RTDSGVHA Sbjct: 1 MRRIRLIVSYDGTNYCGWQKQPNGITIEEVLNNAITKLTGEDIEVIGASRTDSGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD A+N L + I I V+ +H R + ++Y YRI+ R+ Sbjct: 61 IAVFDTNARIAADKFAFAINQRL--PEDIRIQYSDEVESGWHPRKNDCIKTYTYRILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ A +LD E MR A+ + +G HDFT+F S QASSPIRTI ++ Sbjct: 119 IDIPTERLYAHFCYFNLDVEKMREASGYFIGTHDFTSFCSQKSQASSPIRTIFSLEILQD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ I + FL+ IR G+L VG G + + + + ++A++RK G P +GL Sbjct: 179 EDMVTIVIRGDGFLYNMIRIIAGTLIKVGMGVYPPSHITEIMKAKNRKLAGQTMPAKGLT 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LVEIEY 244 >gi|260776454|ref|ZP_05885349.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] gi|260607677|gb|EEX33942.1| tRNA pseudouridine synthase A [Vibrio coralliilyticus ATCC BAA-450] Length = 264 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ Y+GWQRQK S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTHYYGWQRQKEVKSVQEKLERALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L + I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTSASRKMVAWTMGVNANL--PNDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H DV G Sbjct: 119 RPGIMSSGVSHYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLDVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L+ +DRK G A GLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQKPEWIKWLLEVKDRKLAGATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|295401888|ref|ZP_06811851.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] gi|294976018|gb|EFG51633.1| tRNA pseudouridine synthase A [Geobacillus thermoglucosidasius C56-YS93] Length = 248 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 126/246 (51%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA Q Sbjct: 3 KRIKCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 63 VIHFDTFLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + P LD E M A + + G HDFT+F S +RTI D+ Sbjct: 121 ERDVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVR 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L+E + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY Sbjct: 181 DDLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LWKVYY 246 >gi|168216665|ref|ZP_02642290.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|182381201|gb|EDT78680.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 244 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKSGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|83594681|ref|YP_428433.1| pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] gi|123725839|sp|Q2RNZ9|TRUA_RHORT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83577595|gb|ABC24146.1| Pseudouridylate synthase [Rhodospirillum rubrum ATCC 11170] Length = 278 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + +EY+G GY GWQRQ NG +IQ S+E+A F + G VHG+GRTDSGVHAL Q Sbjct: 1 MVRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R + + KALNA+L+ I++++ + V + FHARFSA RSY YRI+ R Sbjct: 61 VAHLDLPRAYGAATVMKALNAHLR-PQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++GR W + + ++ M AAQ LVGRHDF++FR+ CQA SP++T+ V Sbjct: 120 APPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L LVGDG+WT+ L AL+A DR GP APP+GLY Sbjct: 180 GDEIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLY 239 Query: 241 FDSVEY 246 F V + Sbjct: 240 FLRVRF 245 >gi|323706484|ref|ZP_08118045.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] gi|323534204|gb|EGB23994.1| tRNA pseudouridine synthase A [Thermoanaerobacterium xylanolyticum LX-11] Length = 239 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 127/241 (52%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY+G+ Y GWQ QKN ++Q I KAI +T E V + G+ RTD+GVHAL QVA+F Sbjct: 1 MVIEYDGTNYHGWQIQKNAVTVQEVITKAIKKITSEDVNLIGSSRTDAGVHALNQVANFI 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + ALN+ L I I N D FH+R+SA + Y Y I R+ + Sbjct: 61 SNCNIPLSKMPNALNSVL--PKDIVIKNAYEADMDFHSRYSAKGKRYKYIIYNRKFNSPV 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + +W I LD + M + +L G HDF+ F+S IRT+ + +E Sbjct: 119 YRNYSWHISDELDLDKMIESLTYLKGTHDFSAFKSSGSSVKDSIRTVRDISLRKNDFNVE 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A FL+ +R VG++ VG GK +++ L+++DR G APP+GL+ + Sbjct: 179 FEIEADGFLYNMVRIIVGTIVDVGIGKINPIHVKEILESKDRCMAGKTAPPQGLFLTKIY 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|300857214|ref|YP_003782198.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] gi|300437329|gb|ADK17096.1| tRNA pseudouridine synthase A [Clostridium ljungdahlii DSM 13528] Length = 244 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQRQ N +IQ +E+AI +TG V GA RTD+GVHA Sbjct: 1 MKNVMLTIEYDGTNYSGWQRQNNAMTIQQRLEEAIKKITGNFSEVIGASRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + ALN L I +LN VD FH+R+ ++ + Y+Y I+T Sbjct: 61 VCNFFTNSKMPSPNFKMALNGVL--PKDIVVLNAREVDNSFHSRYHSLGKKYVYTIVTGN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD + M+ A ++ +G HDF+ F+ A S +RT+ + Sbjct: 119 NRPVIGRQYVYYFRRKLDIDKMKNACKYFIGTHDFSAFKKKGSSAKSSVRTVKELTIAQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 NLI+ +V FL+ +R VG+L VG G++T ++ L ++DR + G P GL Sbjct: 179 DNLIKFSIVGDGFLYNMVRIIVGTLLEVGLGRFTPEYVKDILDSKDRSKAGKPVPALGLC 238 Query: 241 FDSVEY 246 + + Y Sbjct: 239 LEKIFY 244 >gi|229525612|ref|ZP_04415017.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] gi|229339193|gb|EEO04210.1| tRNA pseudouridine synthase A [Vibrio cholerae bv. albensis VL426] Length = 264 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|121728128|ref|ZP_01681164.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229512439|ref|ZP_04401912.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] gi|121629596|gb|EAX62018.1| tRNA pseudouridine synthase A [Vibrio cholerae V52] gi|229350520|gb|EEO15467.1| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21] Length = 264 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|138893815|ref|YP_001124268.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196250992|ref|ZP_03149674.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] gi|166228701|sp|A4IJL9|TRUA_GEOTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134265328|gb|ABO65523.1| tRNA pseudouridine synthase A [Geobacillus thermodenitrificans NG80-2] gi|196209464|gb|EDY04241.1| tRNA pseudouridine synthase A [Geobacillus sp. G11MC16] Length = 253 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 124/248 (50%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M R ++ Y+G+ + G+Q Q ++QG E + + G+ V + +GRTD+GVHA Sbjct: 1 MTRRIKCVVAYDGTYFSGYQVQPGKRTVQGEFEGVLKRMHKGDDVRITASGRTDAGVHAY 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P KALNA L D I++ ++ D FHARFSA + Y Y + T Sbjct: 61 GQVIHFDTPLALSPEQWKKALNAQL--PDDIAVRSVDEADSTFHARFSAKAKEYRYNVWT 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P L + M A L G HDFT+F S +RTI ++ Sbjct: 119 AAERDVFRRHYCAWHPYPLRVDAMSEALGLLKGTHDFTSFCSAKTVIEDRVRTIYQAEME 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G +++ R V FL+ +R VG++ VG GK D+E L A+DR+ GP AP EG Sbjct: 179 VDGPMLQFRFVGSGFLYNMVRIIVGTVLEVGQGKRPPDDIEALLAAKDRRLAGPTAPAEG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWRVYY 246 >gi|148977676|ref|ZP_01814237.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] gi|145963044|gb|EDK28313.1| tRNA pseudouridine synthase A [Vibrionales bacterium SWAT-3] Length = 264 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANAN--MPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSHSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIKWLLEAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|312109293|ref|YP_003987609.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] gi|311214394|gb|ADP72998.1| tRNA pseudouridine synthase A [Geobacillus sp. Y4.1MC1] Length = 248 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R + Y+G+ +FG+Q Q ++QG +E+A+ + G+ + V +GRTD+GVHA Q Sbjct: 3 KRIKCTLSYDGTHFFGYQIQPGKRTVQGELEQALEQIHKGKAIRVTASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P KALNA L D I I + FHARFSA + Y Y++ Q Sbjct: 63 VIHFDTFLSLSPEQWKKALNALL--PDDIVIKDAQEAAPSFHARFSATAKEYRYKVRIAQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + P LD E M A + + G HDFT+F S +RTI D+ Sbjct: 121 ERDVFLRHYCYHYPYPLDMEAMGRALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMTVR 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L+E R + FL+ +R VG++ VG GK + + AL A+DR+ G APP+GLY Sbjct: 181 DDLLEFRFIGNGFLYNMVRIIVGTILEVGQGKRSVDSISSALAAKDRRFAGKTAPPQGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LWKVYY 246 >gi|169347102|ref|ZP_02866044.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169296785|gb|EDS78914.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] Length = 244 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ YFGWQ+Q G++IQ +E+AI VT E V + G+ RTDSGVHA Sbjct: 1 MRNIKLIIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN+ L I I+N V + FHAR+ ++Y Y I+ R+ Sbjct: 61 VANFKTNSNIPGKNFKAALNSKL--PKDIVIMNSEEVAEDFHARYMTTGKTYCYTILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ALE+ + + K LD E+M+ A ++ +G+HDF F+ + +RTI + + Sbjct: 119 EPPALERNCVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I V A FL+ +R VG+L VG GK +++ + + DRK+ G PP GL Sbjct: 179 GNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|153216039|ref|ZP_01950244.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|153829544|ref|ZP_01982211.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|254226230|ref|ZP_04919824.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|254291873|ref|ZP_04962656.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|124114489|gb|EAY33309.1| tRNA pseudouridine synthase A [Vibrio cholerae 1587] gi|125621266|gb|EAZ49606.1| tRNA pseudouridine synthase A [Vibrio cholerae V51] gi|148875004|gb|EDL73139.1| tRNA pseudouridine synthase A [Vibrio cholerae 623-39] gi|150422233|gb|EDN14197.1| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226] gi|327483717|gb|AEA78124.1| tRNA pseudouridine synthase A [Vibrio cholerae LMA3894-4] Length = 264 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTSAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|222084710|ref|YP_002543239.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] gi|221722158|gb|ACM25314.1| tRNA pseudouridine synthase A [Agrobacterium radiobacter K84] Length = 266 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 156/247 (63%), Positives = 187/247 (75%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ NG S+QG+IE+AI +TGE V GAGRTDSGVHA+ Q Sbjct: 2 MPRYRMTVEYDGIPYVGWQRQNNGPSVQGAIERAILSLTGETASVRGAGRTDSGVHAVGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDT-ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+++ ++ILN+ VD F ARFSAIRR YLYRII R Sbjct: 62 VTHADLSKEWKPHTLRNALNAHLRLAGDRVAILNVMEVDASFDARFSAIRRHYLYRIIVR 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE GRAW + K +D E M AAQ LVGRHDFTTFRS+HCQA+SP+RT+D DV Sbjct: 122 RAPLALEAGRAWWVAKDMDHEVMHTAAQTLVGRHDFTTFRSVHCQANSPVRTLDRLDVTR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+ AL+A+DRK CGP+APP+GL Sbjct: 182 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVRTALEARDRKACGPVAPPDGL 241 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 242 YFMQVDY 248 >gi|317472004|ref|ZP_07931336.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] gi|316900408|gb|EFV22390.1| tRNA pseudouridine synthase A [Anaerostipes sp. 3_2_56FAA] Length = 252 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGVLNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN L D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQRL--PDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDVERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRRDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|15641014|ref|NP_230645.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587328|ref|ZP_01677099.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|147674772|ref|YP_001216471.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|153819838|ref|ZP_01972505.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|183179415|ref|ZP_02957626.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227081173|ref|YP_002809724.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|229505402|ref|ZP_04394912.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229510928|ref|ZP_04400407.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229518049|ref|ZP_04407493.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229529907|ref|ZP_04419297.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229608421|ref|YP_002879069.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254848129|ref|ZP_05237479.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255744781|ref|ZP_05418732.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262151270|ref|ZP_06028406.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262167166|ref|ZP_06034879.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262190865|ref|ZP_06049084.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297578606|ref|ZP_06940534.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|298498887|ref|ZP_07008694.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] gi|24212594|sp|Q9KTA4|TRUA_VIBCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172047415|sp|A5F2T4|TRUA_VIBC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764874|sp|C3LTP7|TRUA_VIBCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9655462|gb|AAF94160.1| tRNA pseudouridine synthase A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548411|gb|EAX58471.1| tRNA pseudouridine synthase A [Vibrio cholerae 2740-80] gi|126509619|gb|EAZ72213.1| tRNA pseudouridine synthase A [Vibrio cholerae NCTC 8457] gi|146316655|gb|ABQ21194.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|183012826|gb|EDT88126.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-3] gi|227009061|gb|ACP05273.1| tRNA pseudouridine synthase A [Vibrio cholerae M66-2] gi|227012816|gb|ACP09026.1| tRNA pseudouridine synthase A [Vibrio cholerae O395] gi|229333681|gb|EEN99167.1| tRNA pseudouridine synthase A [Vibrio cholerae 12129(1)] gi|229344764|gb|EEO09738.1| tRNA pseudouridine synthase A [Vibrio cholerae RC9] gi|229350893|gb|EEO15834.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|229357625|gb|EEO22542.1| tRNA pseudouridine synthase A [Vibrio cholerae BX 330286] gi|229371076|gb|ACQ61499.1| tRNA pseudouridine synthase A [Vibrio cholerae MJ-1236] gi|254843834|gb|EET22248.1| tRNA pseudouridine synthase A [Vibrio cholerae MO10] gi|255737812|gb|EET93206.1| tRNA pseudouridine synthase A [Vibrio cholera CIRS 101] gi|262024387|gb|EEY43075.1| tRNA pseudouridine synthase A [Vibrio cholerae RC27] gi|262030961|gb|EEY49589.1| tRNA pseudouridine synthase A [Vibrio cholerae INDRE 91/1] gi|262033256|gb|EEY51775.1| tRNA pseudouridine synthase A [Vibrio cholerae CT 5369-93] gi|297536200|gb|EFH75033.1| tRNA pseudouridine synthase A [Vibrio cholerae RC385] gi|297543220|gb|EFH79270.1| tRNA pseudouridine synthase A [Vibrio cholerae MAK 757] Length = 264 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|302876500|ref|YP_003845133.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307687172|ref|ZP_07629618.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302579357|gb|ADL53369.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 244 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I+EY+G+ Y GWQ+QKN ++QG+IEKAI +T E V + G RTDSGVHA Sbjct: 1 MRNIKLILEYDGTKYSGWQKQKNSVTVQGTIEKAIEAITKESVELIGCSRTDSGVHAKGY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + A+NA L + I IL+ V + FH+RF+ I ++Y Y ++ R Sbjct: 61 TANFFTNSKIPIERFYIAINAKL--PEDIVILSSEEVPEDFHSRFNCIGKTYCYSVLNRV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ + + +P+ L + M+ AA+ VG +DF FR++ + +S +RTI +V Sbjct: 119 SYPAMYRNYLYHVPRKLSIDEMKKAAESFVGTYDFNAFRNLGTEVASTVRTIHRIEVEEH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I I V FL+ +R G+L VG G+ S ++ L+++DR G AP GL Sbjct: 179 GDIINILVTGDGFLYNMVRIIAGTLVEVGLGQKRSDQIKVILESKDRNRAGKTAPARGLS 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDKVYY 244 >gi|295132840|ref|YP_003583516.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294980855|gb|ADF51320.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 250 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 116/245 (47%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q S+Q +++A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIDLAYLGTAYHGWQIQPEAVSVQQVLQEALSKILQQNIEVVGAGRTDAGVHATQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD L LN++L ISI L V Q HARF A RSY Y I+ + Sbjct: 61 AHFDADLNCDEKTLQFKLNSFL--PKDISIRQLFKVQSQAHARFDACSRSYEYHIVNFKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + K D E M AA L +F F + I Sbjct: 119 PFKIDLAY--YLLKQPDIEKMNHAAAMLKDYTNFKCFSKSRTDVKTYNCNITAAFWEQSK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L +G GK + L++ L+++DR G P GLY Sbjct: 177 DELIFHITADRFLRNMVRAIVGTLLDIGLGKNSVEFLKEILKSEDRSMAGTSVPAHGLYL 236 Query: 242 DSVEY 246 +EY Sbjct: 237 TRIEY 241 >gi|322514646|ref|ZP_08067676.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] gi|322119437|gb|EFX91539.1| tRNA pseudouridine synthase A [Actinobacillus ureae ATCC 25976] Length = 289 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V V AGRTDSGVH QV Sbjct: 28 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSVVANAPVEAFCAGRTDSGVHGTGQV 87 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L + I++ V + FHARFSA R Y Y I + Sbjct: 88 VHFETETVRPLQSWCFGTNANL--PNDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 145 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ C++ +P R I H +V+ G Sbjct: 146 RSAILPKGVSHYHHELDHQKMHEAGQFLLGENDFSSFRAAKCESHTPWRNIHHLNVSRLG 205 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 206 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 265 Query: 242 DSVEY 246 V Y Sbjct: 266 VDVHY 270 >gi|328545265|ref|YP_004305374.1| tRNA pseudouridine synthase A [polymorphum gilvum SL003B-26A1] gi|326415007|gb|ADZ72070.1| tRNA pseudouridine synthase A [Polymorphum gilvum SL003B-26A1] Length = 276 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q IE+A+ GE V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGRPFCGWQRQANGPSVQAVIERAVKAFCGEEVTIGGAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALN + D +++L + F +RFSAIRR+Y YRI+ R Sbjct: 61 VAHVDLSRDWPADTVLGALNFH-CQPDPVALLACEKMHAGFDSRFSAIRRAYRYRIVNRV 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL E+G AW + LD E M AAQ VG HDFTTFR CQA SP++T++ F V Sbjct: 120 PPLTYERGLAWHVKPPLDAEAMHAAAQVFVGHHDFTTFRHARCQAKSPVKTLEFFAVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ +RSFLH Q+RS VG+L+LVG+G+W + + +AL A++RK CGP+APP+GLY Sbjct: 180 GDVVVAECASRSFLHNQVRSMVGTLRLVGEGRWDAQTVREALAARNRKACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTRVDY 245 >gi|190890088|ref|YP_001976630.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] gi|190695367|gb|ACE89452.1| tRNA-pseudouridine synthase I protein [Rhizobium etli CIAT 652] Length = 266 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 152/247 (61%), Positives = 190/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L A+NA+L+ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKQWSPYQLQNAMNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica OSU18] gi|167010425|ref|ZP_02275356.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FSC200] gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] gi|122325138|sp|Q0BLV1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122999741|sp|Q2A3D7|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica LVS] gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp. holarctica OSU18] gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica 257] Length = 258 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + VD F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVDNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|153853813|ref|ZP_01995169.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] gi|149753563|gb|EDM63494.1| hypothetical protein DORLON_01160 [Dorea longicatena DSM 13814] Length = 246 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + K++ +TGE + + GA RTDSGVHAL Sbjct: 1 MKRIRIFVAYDGTNYCGWQVQPNGVTIEEKLNKSLARLTGEEIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIITR 119 VA FD P ALN L + I ++ V +H R+ ++Y Y I Sbjct: 61 VAVFDTESSIPPERFAYALNQRL--PEDIVVVRSDEVPADWHPRYQENISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L+ + +D E MR A++LVG HDF +F +I +RT+ + Sbjct: 119 AVPNPLKTRYCTFVSFPMDVEAMRAGAKYLVGEHDFVSFCNIRTNTQDTVRTVYDLIIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I +R+ FL+ +R G L VG G +T +++ L A+ G APP GL Sbjct: 179 KDDEIVLRITGNGFLYNMVRIIAGVLIRVGRGFYTPEKVKEILDAKVHTSEGATAPPNGL 238 Query: 240 YFDSVEYS 247 ++Y+ Sbjct: 239 VLMKIDYN 246 >gi|116250203|ref|YP_766041.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. viciae 3841] gi|115254851|emb|CAK05925.1| putative tRNA pseudouridine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 272 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 150/247 (60%), Positives = 189/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W P L ALNA+L+I + +S+L++ + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKDWSPYQLQNALNAHLRIAGERVSVLDVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 RGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALKARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|310823108|ref|YP_003955466.1| tRNA pseudouridine synthase a [Stigmatella aurantiaca DW4/3-1] gi|309396180|gb|ADO73639.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 265 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GS Y GWQ Q+NG S+Q + +A+ + G V V AGRTDSGVHA Q Sbjct: 1 MPRLKLTIEYDGSRYVGWQVQRNGRSVQAELGEALGRLLGGDVEVVAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD R+ + LN L + I+++ V F R + + Y YR+ Sbjct: 61 VVCFDTERQLPLKAYHRGLNGLL--PEDIAVVRAEEVSAAFDPRRWSRGKRYRYRVSNLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L + W I L E M AA L+GRHD++ FR+ CQA+ +R + V Sbjct: 119 SRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQAAHAVREVRRLSVEGT 178 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 VV +FL +R+ VG+L VG G+ + + L + DR GP APP GL Sbjct: 179 PGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLASGDRTLAGPTAPPHGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|319403559|emb|CBI77141.1| tRNA pseudouridine synthase A [Bartonella rochalimae ATCC BAA-1498] Length = 247 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGEDIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|261340711|ref|ZP_05968569.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] gi|288317127|gb|EFC56065.1| tRNA pseudouridine synthase A [Enterobacter cancerogenus ATCC 35316] Length = 270 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 HRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVLCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 70 VHFETTAVRKDAAWTLGVNANL--PGDIAVRWVKNVPDDFHARFSATARRYRYVIYNQRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 128 RPAVLSQGVTHFYEPLDAERMQRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|303251239|ref|ZP_07337417.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252529|ref|ZP_07534425.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261387|ref|ZP_07543062.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302649781|gb|EFL79959.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860121|gb|EFM92138.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869118|gb|EFN00920.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 262 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|307245766|ref|ZP_07527852.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254739|ref|ZP_07536566.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259179|ref|ZP_07540909.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853468|gb|EFM85687.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862265|gb|EFM94232.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866846|gb|EFM98704.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 262 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGISHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|254429312|ref|ZP_05043019.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] gi|196195481|gb|EDX90440.1| tRNA pseudouridine synthase A [Alcanivorax sp. DG881] Length = 267 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ Q ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQTQQPGVRTVQECLEAALSKVANHPVAVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD N L +++ + VD FHARFSA+ R Y Y I Sbjct: 61 QVVHFDSEAPREMKSWIMGANTNL--PRDVTVRWATPVDDAFHARFSAVSRRYRYVIYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ ++ Sbjct: 119 ARPPALFRNQVTWNYRPLDVAAMREAAAYLVGEHDFTAYRSVHCQAKSPLKTMHSLELYE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A +FL +R+ G L VG GK + + L+ +DR++ APP GL Sbjct: 179 HGKVLVLEAHANAFLMHMVRNIAGVLMSVGAGKRPAHWAREVLEGRDRRKGAATAPPFGL 238 Query: 240 YFDSVEY 246 Y +EY Sbjct: 239 YLVDIEY 245 >gi|312882128|ref|ZP_07741878.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] gi|309370264|gb|EFP97766.1| tRNA pseudouridine synthase A [Vibrio caribbenthicus ATCC BAA-2122] Length = 264 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQK S+Q +EKA+ +V V V AGRTD+GVH Q+ Sbjct: 1 MKIALGIEYNGSQYFGWQRQKEVKSVQECLEKALSIVANHKVEVQCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFETTASRKAVAWTMGANANL--PKDIAVRWAKEVPDEFHARFSATARRYRYLIFNDAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V S G Sbjct: 119 RPGILSSGVSHYHGDLDVTQMHKAGQYLLGENDFTSFRATHCQSKSPWRNLMHLNVTSHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +VG G+ + L +DRK+ G A EGLY Sbjct: 179 KYIVVDIKANAFVHHMVRNIVGSLLVVGRGEKKPEWIRDLLAIKDRKQAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|291562296|emb|CBL41112.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 344 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q NG +I+ + KA+ + E V V GA RTDSGVHA Sbjct: 1 MRRIKLTVAYDGTAYKGWQLQPNGVTIEEMLNKALSDLLKEPVCVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD C A+N L + I ++ V +H R ++Y Y+I+ + Sbjct: 61 VAVFDTESRIPGDKFCYAVNRGL--PEDIRVVESEEVPLDWHPRKQNCVKTYEYQILNCK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + A L+ E M AA++L+G HDF +F + + QA +RTI +V Sbjct: 119 IEIPTRRLYAHFCYYPLNVEKMNEAAKYLIGEHDFISFCAANHQAEETVRTIYGAEVKKN 178 Query: 181 GNLIEIRV-VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I FL+ +R G+L VG G+W +++ L+A++RKE G AP +GL Sbjct: 179 DEDIVTIRLCGSGFLYNMVRIIAGTLLKVGTGEWEPEHVKEVLEARNRKEAGQTAPAKGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TLVGIEY 245 >gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM 12680] Length = 244 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++EY G+ Y G+QRQ G +I+G +E AI +TGE V V AGRTD+GVHAL Q Sbjct: 1 MNRIKALVEYEGTRYSGFQRQPRGLTIEGELEAAICKLTGERVKVLAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD P ALN+ L I +L + FH R+ A ++Y Y I ++ Sbjct: 61 VIAFDTESPIPPERFAPALNSVL--PSDIRVLKSEKAKEGFHPRYQARAKAYRYLIYRQE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+ P+ LD M AA+++ G HDF F + + +RT+ +N Sbjct: 119 EGRTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDFMAFCASGSGVRNYVRTVFEVSINEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I V FL+ +R VG+L VG + ++E+ L ++DR+ GP P GLY Sbjct: 179 PPFLQIDVCGDGFLYNMVRIMVGTLLEVGRKRLAPEEVEQILLSRDRQRAGPTVPACGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKRVFY 244 >gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|295312837|ref|ZP_06803569.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica URFT1] gi|166228698|sp|A7NCA0|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp. holarctica FTNF002-00] Length = 258 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + +NA L I IL + V+ F++RF+AI R+Y Y I Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALL--PQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + M A ++L+G DF++FRS CQ+++P R I + Sbjct: 119 TSSPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+ VGSL VG G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|89073216|ref|ZP_01159746.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] gi|89050926|gb|EAR56390.1| tRNA pseudouridine synthase A [Photobacterium sp. SKA34] Length = 261 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ Y+GWQRQ++ S+Q +EKA+ V + V V AGRTD+GVH QV Sbjct: 1 MRIALGVEYDGAKYYGWQRQRDVDSVQERLEKALSKVANQPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF++ + V NA+L I++ + V + FHARF+A R Y Y I Sbjct: 61 VHFEINIDRKIVAWTMGANAHL--PKDIAVRWATEVSEDFHARFTATARRYRYIIFNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPAILGNGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRAMHCQSRSPWRNLIHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ +E L ++R G A EGLY Sbjct: 179 DFVIIDIKANAFVHHMVRNITGSLIKVGKGEEKPEWIEWLLAQKNRTLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|226940175|ref|YP_002795248.1| tRNA pseudouridine synthase A [Laribacter hongkongensis HLHK9] gi|226715101|gb|ACO74239.1| TruA [Laribacter hongkongensis HLHK9] Length = 283 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 139/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G G+ GWQRQ + ++QG++E A+ + G V V AGRTD+GVHA +QV Sbjct: 26 MRIALGLEYDGRGFAGWQRQPDQDTVQGALEGALSQIAGHPVSVLAAGRTDAGVHASQQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N +L +++L + V FHARFSA RSY Y ++ Sbjct: 86 VHFDTGVERPLTAWVRGVNRFL--PPGVAVLWVQPVADDFHARFSACSRSYSYYLMNHPV 143 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL GR LD M+ AA L+G+HDF++FR+ CQA +P++T+ FD++ Sbjct: 144 RPALGAGRVGWFHAPLDVPAMQAAAGLLLGQHDFSSFRAAECQAKTPVKTLARFDISEHD 203 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + A +FLH +R+ VG+L VG G + L A+DR + P P+GLY Sbjct: 204 GLIRFDLQADAFLHHMVRNLVGALVYVGKGAHAPEWMAGLLAARDRTQAPPTFMPDGLYL 263 Query: 242 DSVEY 246 +V Y Sbjct: 264 TAVGY 268 >gi|153826201|ref|ZP_01978868.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] gi|149740061|gb|EDM54230.1| tRNA pseudouridine synthase A [Vibrio cholerae MZO-2] Length = 264 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EKA+ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKALSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHDELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG G+ ++ L +DR A EGLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIVVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|33152228|ref|NP_873581.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] gi|42559759|sp|Q7U335|TRUA_HAEDU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33148450|gb|AAP95970.1| tRNA pseudouridine synthase A [Haemophilus ducreyi 35000HP] Length = 261 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q ++E+A+ VT + V AGRTDSGVH QV Sbjct: 1 MKVALGIEYDGSNYFGWQRQAEVVSVQQTLEEALSKVTNTTIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E C NA+L + I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFDTEVERPLASWCFGTNAHLA--NDIAVKWAVKVAEDFHARFSATARRYRYIIFNSKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q+L+G DF++FR+ CQ+ +P R I H +V G Sbjct: 119 RTAILPKGVAHYHYPLDAQKMHQAGQYLLGEQDFSSFRAAKCQSHTPWRNIHHLNVVRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G+ ++ L+ ++R+ P EGLY Sbjct: 179 NYVIVDIQANAFVHHMVRNIVGSLLEVGQGRQPIEWIKWLLEQKNRQLAAPTTKAEGLYL 238 Query: 242 DSVEY 246 +VEY Sbjct: 239 VNVEY 243 >gi|326390628|ref|ZP_08212183.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] gi|325993306|gb|EGD51743.1| tRNA pseudouridine synthase A [Thermoanaerobacter ethanolicus JW 200] Length = 244 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFKTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FQMPTMRNYCWHIDYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY Sbjct: 179 EDFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEVNEVYDILTSRDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIMY 244 >gi|46143880|ref|ZP_00204588.1| COG0101: Pseudouridylate synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 262 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|190150230|ref|YP_001968755.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263568|ref|ZP_07545183.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692338|sp|B3GXP8|TRUA_ACTP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189915361|gb|ACE61613.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871211|gb|EFN02940.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 262 Score = 194 bits (493), Expect = 7e-48, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|153952894|ref|YP_001393659.1| tRNA pseudouridine synthase A [Clostridium kluyveri DSM 555] gi|189029994|sp|A5N4T0|TRUA_CLOK5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146345775|gb|EDK32311.1| TruA [Clostridium kluyveri DSM 555] Length = 244 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA Sbjct: 1 MKNIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + LN L + I++L+ VD FH+R+ + Y Y I+T Sbjct: 61 VCNFFTASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V Sbjct: 119 RPPVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I+ +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL Sbjct: 179 KNIIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|259047524|ref|ZP_05737925.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] gi|259035715|gb|EEW36970.1| tRNA pseudouridine synthase A [Granulicatella adiacens ATCC 49175] Length = 249 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY + I+Y+G+ Y G+Q Q+NG+SIQ + KA+ +T G+ + V G+GRTDSGVHA Sbjct: 1 MQRYKLTIQYDGTPYVGFQVQENGNSIQAELNKALKKMTKGQYIPVSGSGRTDSGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV H D + L +A+N+ L +I I++ V ++FHAR+S + Y+Y++ T Sbjct: 61 QVVHIDYPKRIEANSLVRAMNSLL--PTSIRIVSAEAVSEEFHARYSVTGKRYIYKVTTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + P D + + A + ++G HDFT+F S S +R + +V Sbjct: 119 QVQSPFLRQYELHHPFKTDVDRINKAFEAVIGEHDFTSFCSTKSDKDSKVRVVTKAEVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+ +GDG ++++ L+A DR GP AP GL Sbjct: 179 NGDELIFTFEGKGFLYNMVRILVGTALQIGDGLREVEEMKQILEAMDRNAAGPTAPSHGL 238 Query: 240 YFDSVEY 246 Y D V Y Sbjct: 239 YLDEVFY 245 >gi|212635890|ref|YP_002312415.1| tRNA pseudouridine synthase A [Shewanella piezotolerans WP3] gi|226708659|sp|B8CPW5|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3] Length = 261 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ + S+QG +EKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSRYYGWQRQLDVDSVQGQLEKALSKVANEPITVQCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L D I++ + +VD++FHARFSA R Y Y I Q Sbjct: 61 VHFDTNAIRKETAWTLGVNVNL--PDDIAVRWVKVVDEEFHARFSATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ VG HDFT+FR++ CQ+ +P R I +V G Sbjct: 119 RPGILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSFRALQCQSKTPFREIHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VG+L +G G + L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGTLLEIGKGNQPKEWVNTLLALKDRSKAAATAQPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|15896350|ref|NP_349699.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum ATCC 824] gi|30913407|sp|Q97EL1|TRUA_CLOAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15026164|gb|AAK81039.1|AE007806_12 Pseudouridylate synthase, TRUA [Clostridium acetobutylicum ATCC 824] gi|325510506|gb|ADZ22142.1| tRNA pseudouridine synthase A [Clostridium acetobutylicum EA 2018] Length = 244 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +EY+G+ Y GWQ+QKN ++Q +EK I +TGE + V G RTDSGVHA Sbjct: 1 MKNVKLTLEYDGTNYCGWQKQKNVVTVQEEVEKIIGEITGEKIDVIGCSRTDSGVHAKAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F P LN+ L D I LN V FH+RF ++Y Y I+ R Sbjct: 61 TCNFKTNTVIPPEKFYLVLNSVL--PDDIVALNSEEVPMDFHSRFDNKGKTYSYTILNRL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+++ + L+C+ MR A ++++G HDFT+F+S + S IRTI + Sbjct: 119 QRAAIDRNYVYQYGHKLNCDLMREATKYILGTHDFTSFKSTGSKVKSNIRTIYEARIVED 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + V FL+ +R VG+L VG+ K T +++ ++++DR + G + P +GL Sbjct: 179 ENKVIFYVTGDGFLYNMVRIIVGTLLEVGEEKITPLNVKTIVESKDRTKAGRVVPAKGLC 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVMY 244 >gi|84394308|ref|ZP_00993032.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] gi|84375076|gb|EAP91999.1| tRNA pseudouridine synthase A [Vibrio splendidus 12B01] Length = 264 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANAN--MPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGEQKPEWIQWLLEAKDRKVAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|182677494|ref|YP_001831640.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] gi|238691224|sp|B2IEW0|TRUA_BEII9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182633377|gb|ACB94151.1| tRNA pseudouridine synthase A [Beijerinckia indica subsp. indica ATCC 9039] Length = 260 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 137/246 (55%), Positives = 173/246 (70%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQKNG S+Q IE A+ + G V + GAGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P +L ALNA+ ++++ V + F ARFSAIRR YLYRII R+ Sbjct: 61 VAHADLAREWRPDVLRDALNAH-MRPALVAVVAAEPVPETFDARFSAIRRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E GRAWL+ + LD M AAQ L GRHDF+TFR+ CQA+SPIRT++ DV + Sbjct: 120 APLTFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIEIR ARSFLH Q+RS VGSL++VG GKW++ DL AL+A DR+ CG +AP GLY Sbjct: 180 GDLIEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|241668494|ref|ZP_04756072.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877028|ref|ZP_05249738.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843049|gb|EET21463.1| tRNA pseudouridine synthetase A [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 258 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ +VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQDIKILDIKVVDNDFNSRFTAKNRTYNYIIYNSL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPIFAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL VG + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKVGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|303252899|ref|ZP_07339058.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247890|ref|ZP_07529926.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648329|gb|EFL78526.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855692|gb|EFM87859.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 262 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKP 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + + +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHYLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|182418813|ref|ZP_02950078.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237666467|ref|ZP_04526452.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377310|gb|EDT74871.1| tRNA pseudouridine synthase A [Clostridium butyricum 5521] gi|237657666|gb|EEP55221.1| tRNA pseudouridine synthase A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 244 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IE++GS + GWQ+Q G ++Q IE+AIF TGE ++++G+ RTDSGVHA Sbjct: 1 MRNIKLTIEFDGSEFCGWQKQPKGRTVQKVIEEAIFKATGEEIIINGSSRTDSGVHAKDM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F +ALN L +SI+ V + FHAR+S+ ++Y Y II R Sbjct: 61 IANFFTNSTIPGDKFREALNVRL--PKDVSIIRSEEVSEDFHARYSSKGKTYSYTIIHRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + LD +NMR A ++ +G HDF F S + +RTI + Sbjct: 119 ERVSFGHQYVYHWRHDLDIDNMREACKYFIGTHDFRAFMSPGSSIKTTVRTITDLHIEQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+I V A FL+ +R VG+L VG+ K D++ ++ +RK G + PP GL Sbjct: 179 GEKIKIFVSADGFLYNMVRIIVGTLIKVGNKKLKPEDIQDIIREGNRKRAGMVVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|17988610|ref|NP_541243.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|62317861|ref|YP_223714.1| tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|83269839|ref|YP_419130.1| tRNA pseudouridine synthase A [Brucella melitensis biovar Abortus 2308] gi|148558621|ref|YP_001257944.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161621080|ref|YP_001594966.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163845146|ref|YP_001622801.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|221090245|ref|YP_002519393.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|225629482|ref|ZP_03787515.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225686787|ref|YP_002734759.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237817402|ref|ZP_04596394.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|254690653|ref|ZP_05153907.1| tRNA pseudouridine synthase A [Brucella abortus bv. 6 str. 870] gi|254696042|ref|ZP_05157870.1| tRNA pseudouridine synthase A [Brucella abortus bv. 3 str. Tulya] gi|254699151|ref|ZP_05160979.1| tRNA pseudouridine synthase A [Brucella abortus bv. 2 str. 86/8/59] gi|254700227|ref|ZP_05162055.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|254703348|ref|ZP_05165176.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|254705511|ref|ZP_05167339.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|254710742|ref|ZP_05172553.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|254712788|ref|ZP_05174599.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|254715857|ref|ZP_05177668.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|254732595|ref|ZP_05191173.1| tRNA pseudouridine synthase A [Brucella abortus bv. 4 str. 292] gi|256015792|ref|YP_003105801.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|256029125|ref|ZP_05442739.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|256043901|ref|ZP_05446820.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|256058808|ref|ZP_05449024.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|256111035|ref|ZP_05452097.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|256157317|ref|ZP_05455235.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|256253705|ref|ZP_05459241.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|256255835|ref|ZP_05461371.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|256262079|ref|ZP_05464611.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|260167783|ref|ZP_05754594.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|260545096|ref|ZP_05820917.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260565077|ref|ZP_05835562.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260567722|ref|ZP_05838191.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260756224|ref|ZP_05868572.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260760407|ref|ZP_05872755.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260763647|ref|ZP_05875979.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260882048|ref|ZP_05893662.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|261216474|ref|ZP_05930755.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|261217618|ref|ZP_05931899.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261220842|ref|ZP_05935123.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|261312915|ref|ZP_05952112.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261318310|ref|ZP_05957507.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261320495|ref|ZP_05959692.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261322745|ref|ZP_05961942.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261750722|ref|ZP_05994431.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261753978|ref|ZP_05997687.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|261757220|ref|ZP_06000929.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|265986108|ref|ZP_06098665.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|265990323|ref|ZP_06102880.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|265992570|ref|ZP_06105127.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|265995802|ref|ZP_06108359.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|294853986|ref|ZP_06794658.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297249204|ref|ZP_06932905.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|30913400|sp|Q8YDB2|TRUA_BRUME RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901254|sp|Q60CV4|TRUA_BRUSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309258|sp|Q576T1|TRUA_BRUAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123754475|sp|Q2YJQ4|TRUA_BRUA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228682|sp|A5VVT9|TRUA_BRUO2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030128|sp|A9MCV8|TRUA_BRUC2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030129|sp|A9WW43|TRUA_BRUSI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789607|sp|C0RMH2|TRUA_BRUMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17984412|gb|AAL53507.1| tRNA pseudouridine synthase a [Brucella melitensis bv. 1 str. 16M] gi|54112373|gb|AAV28867.1| tRNA pseudouridine synthase A [Brucella suis 1330] gi|62198054|gb|AAX76353.1| TruA, tRNA pseudouridine synthase A [Brucella abortus bv. 1 str. 9-941] gi|82940113|emb|CAJ13161.1| tRNA pseudouridine synthase [Brucella melitensis biovar Abortus 2308] gi|148369906|gb|ABQ62778.1| tRNA pseudouridine synthase A [Brucella ovis ATCC 25840] gi|161337891|gb|ABX64195.1| tRNA pseudouridine synthase A [Brucella canis ATCC 23365] gi|163675869|gb|ABY39979.1| tRNA pseudouridine synthase A [Brucella suis ATCC 23445] gi|225615978|gb|EEH13027.1| tRNA pseudouridine synthase A [Brucella ceti str. Cudo] gi|225642892|gb|ACO02805.1| tRNA pseudouridine synthase A [Brucella melitensis ATCC 23457] gi|237788215|gb|EEP62431.1| tRNA pseudouridine synthase A [Brucella abortus str. 2308 A] gi|255998452|gb|ACU50139.1| tRNA pseudouridine synthase A [Brucella microti CCM 4915] gi|260098367|gb|EEW82241.1| tRNA pseudouridine synthase A [Brucella abortus NCTC 8038] gi|260152720|gb|EEW87813.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. 16M] gi|260154387|gb|EEW89468.1| tRNA pseudouridine synthase A [Brucella suis bv. 4 str. 40] gi|260670725|gb|EEX57665.1| pseudouridylate synthase [Brucella abortus bv. 4 str. 292] gi|260674068|gb|EEX60889.1| pseudouridylate synthase [Brucella abortus bv. 2 str. 86/8/59] gi|260676332|gb|EEX63153.1| pseudouridylate synthase [Brucella abortus bv. 6 str. 870] gi|260871576|gb|EEX78645.1| tRNA pseudouridine synthase A [Brucella abortus bv. 9 str. C68] gi|260918081|gb|EEX84942.1| pseudouridylate synthase [Brucella abortus bv. 3 str. Tulya] gi|260919426|gb|EEX86079.1| tRNA pseudouridine synthase A [Brucella ceti B1/94] gi|260922707|gb|EEX89275.1| tRNA pseudouridine synthase A [Brucella ceti M13/05/1] gi|261293185|gb|EEX96681.1| tRNA pseudouridine synthase A [Brucella ceti M644/93/1] gi|261297533|gb|EEY01030.1| tRNA pseudouridine synthase A [Brucella pinnipedialis B2/94] gi|261298725|gb|EEY02222.1| tRNA pseudouridine synthase A [Brucella neotomae 5K33] gi|261301941|gb|EEY05438.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M163/99/10] gi|261737204|gb|EEY25200.1| tRNA pseudouridine synthase A [Brucella sp. F5/99] gi|261740475|gb|EEY28401.1| tRNA pseudouridine synthase A [Brucella suis bv. 5 str. 513] gi|261743731|gb|EEY31657.1| tRNA pseudouridine synthase A [Brucella suis bv. 3 str. 686] gi|262550099|gb|EEZ06260.1| tRNA pseudouridine synthase A [Brucella ceti M490/95/1] gi|262763440|gb|EEZ09472.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 3 str. Ether] gi|263000992|gb|EEZ13682.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 1 str. Rev.1] gi|263091768|gb|EEZ16099.1| tRNA pseudouridine synthase A [Brucella melitensis bv. 2 str. 63/9] gi|264658305|gb|EEZ28566.1| tRNA pseudouridine synthase A [Brucella pinnipedialis M292/94/1] gi|294819641|gb|EFG36641.1| tRNA pseudouridine synthase A [Brucella sp. NVSL 07-0026] gi|297173073|gb|EFH32437.1| tRNA pseudouridine synthase A [Brucella abortus bv. 5 str. B3196] gi|326411195|gb|ADZ68259.1| tRNA pseudouridine synthase A [Brucella melitensis M28] gi|326554486|gb|ADZ89125.1| tRNA pseudouridine synthase A [Brucella melitensis M5-90] Length = 251 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 131/248 (52%), Positives = 174/248 (70%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L + + ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLVGVDYA 248 >gi|149910526|ref|ZP_01899165.1| tRNA pseudouridine synthase A [Moritella sp. PE36] gi|149806369|gb|EDM66342.1| tRNA pseudouridine synthase A [Moritella sp. PE36] Length = 263 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 104/245 (42%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQK+ S+Q +E A+ V V VH AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSKYYGWQRQKDVISVQEKLEDALSRVANHPVRVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L D I++ VD++FHARFSA R Y Y I Q Sbjct: 61 VHFDTDAVRQDVAWTLGVNANL--PDDIAVRWALEVDEEFHARFSATARRYRYIIYNSQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +D E M AAQ LVG HDFT+FR+ HCQA SPI+T+ H +V Sbjct: 119 RPAILSAGVSHYYGDIDVELMHEAAQQLVGEHDFTSFRAKHCQAKSPIKTMHHINVIRQN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ GSL VG G + + + L +DR + EGLY Sbjct: 179 SYIIIDVKANAFLHHMVRNLAGSLMEVGKGNKPVSWIAELLAGKDRSVAAATSKAEGLYM 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|256762037|ref|ZP_05502617.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256683288|gb|EEU22983.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERASEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|229546930|ref|ZP_04435655.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|229550518|ref|ZP_04439243.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|255971742|ref|ZP_05422328.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255974742|ref|ZP_05425328.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256618347|ref|ZP_05475193.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|257081530|ref|ZP_05575891.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257417608|ref|ZP_05594602.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|257421532|ref|ZP_05598522.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|307276430|ref|ZP_07557553.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307278640|ref|ZP_07559710.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|312952641|ref|ZP_07771505.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|229304375|gb|EEN70371.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|229307858|gb|EEN73845.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255962760|gb|EET95236.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|255967614|gb|EET98236.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256597874|gb|EEU17050.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256989560|gb|EEU76862.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|257159436|gb|EEU89396.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|257163356|gb|EEU93316.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|306504700|gb|EFM73900.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|306506910|gb|EFM76057.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310629429|gb|EFQ12712.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|315026801|gb|EFT38733.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] gi|315147137|gb|EFT91153.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153575|gb|EFT97591.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315156245|gb|EFU00262.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] gi|315158610|gb|EFU02627.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315168134|gb|EFU12151.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171426|gb|EFU15443.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] gi|323479455|gb|ADX78894.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] gi|327534038|gb|AEA92872.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|323699460|ref|ZP_08111372.1| tRNA pseudouridine synthase A [Desulfovibrio sp. ND132] gi|323459392|gb|EGB15257.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans ND132] Length = 251 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + GWQ Q ++QG +E+A+ + G V VHG+GRTD+GVHAL Q Sbjct: 3 MTRIRLTLAYEGTDFCGWQVQPADRTVQGEVERALATILGRAVRVHGSGRTDAGVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + LN L + +L+ + V FHAR+ A+ ++Y Y + + Sbjct: 63 VVHFDCPDGRTGFPWQRGLNGIL--PRDVRVLDAAEVPDDFHARYGAVSKTYEYCLWHER 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 ++ R +D M AA L+G HDF F+++ S +RT+ + Sbjct: 121 GFCLPQRRRFVWNCGPVDFARMEAAAGLLLGEHDFAAFQNVGTDVDSTVRTVTEISRHAG 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + R A FL +R+ VG L G GK + L+A DR PP+G Sbjct: 181 PTAHESVWRFTADGFLKQMVRNLVGCLVACGRGKLDLDGVRVILEAGDRTLAPATVPPQG 240 Query: 239 LYFDSVEY 246 L V Y Sbjct: 241 LTLVRVAY 248 >gi|256956829|ref|ZP_05561000.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078499|ref|ZP_05572860.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294781084|ref|ZP_06746435.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|300861778|ref|ZP_07107858.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|307269121|ref|ZP_07550482.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|307286980|ref|ZP_07567055.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|312901088|ref|ZP_07760376.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|256947325|gb|EEU63957.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986529|gb|EEU73831.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|294451887|gb|EFG20338.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|295112531|emb|CBL31168.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848303|gb|EFK76060.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|306501926|gb|EFM71215.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306514601|gb|EFM83155.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|311291760|gb|EFQ70316.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315031173|gb|EFT43105.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] gi|315035981|gb|EFT47913.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|315145370|gb|EFT89386.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315165868|gb|EFU09885.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + IRTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|315172660|gb|EFU16677.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NEKGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|167748465|ref|ZP_02420592.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] gi|167652457|gb|EDR96586.1| hypothetical protein ANACAC_03209 [Anaerostipes caccae DSM 14662] Length = 252 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ Y GWQ Q ++I+G + + + + GE + V GA RTDSGVHAL Sbjct: 1 MKRIKLEVAYDGTNYCGWQIQPKDTTIEGILNEKLGSLLGEEITVIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD E + +ALN L D I I + S V FH R+ R++Y Y I + Sbjct: 61 VAVFDTETEIPGERIARALNQRL--PDDIVIQSSSEVKDDFHPRYQDTRKTYEYTIYNAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD E MR AA+ +G HDF +F + + +RTI +V Sbjct: 119 FDNPVTARHHHFVYVPLDAERMRTAARCFLGEHDFLSFSTTGSPTKTTVRTIYECEVRQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I +RV FL+ +R G+L +G G+ + + R + GP AP +GL Sbjct: 179 GRYITMRVTGNGFLYNMVRMMAGTLISIGRGRKDPEWVRELFLHPKRGKAGPNAPAKGLT 238 Query: 241 FDSVEY 246 ++ Y Sbjct: 239 LINIHY 244 >gi|167648522|ref|YP_001686185.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] gi|189029993|sp|B0T1S6|TRUA_CAUSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167350952|gb|ABZ73687.1| tRNA pseudouridine synthase A [Caulobacter sp. K31] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 118/246 (47%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G Y G+Q Q + S+QG+IE A+ TG+ + + AGRTD+GVHA Q Sbjct: 1 MPRYRLTIEYDGRPYNGFQAQASQPSVQGAIEAAVKAFTGQTIRIAAAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + ALNA+L + + + D +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLERDWPAETVMNALNAHLVREAISVLDAVVVSD-DWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+G+ W + K +D + M+ AAQ LVG HDFTTFR + CQA SP++T+D V+ Sbjct: 120 APPALERGKVWHVKKPIDADAMQTAAQALVGLHDFTTFRDMACQAKSPLKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + ARSFLH Q+RS G+L VG G+WT+ D+ AL+A+DR CGP+AP +GLY Sbjct: 180 GDEVHLVFEARSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVGY 245 >gi|114046997|ref|YP_737547.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] gi|123131546|sp|Q0HWL5|TRUA_SHESR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113888439|gb|ABI42490.1| tRNA pseudouridine synthase A [Shewanella sp. MR-7] Length = 261 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|256960635|ref|ZP_05564806.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|293382724|ref|ZP_06628649.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|293388093|ref|ZP_06632621.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|312908619|ref|ZP_07767561.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312909233|ref|ZP_07768090.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|256951131|gb|EEU67763.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|291079884|gb|EFE17248.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|291082544|gb|EFE19507.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|310625406|gb|EFQ08689.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|311290475|gb|EFQ69031.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NKTGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|187776609|ref|ZP_02993082.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] gi|187775268|gb|EDU39070.1| hypothetical protein CLOSPO_00123 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEITGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F P L + +N L I +L+ V +FH+RF + ++Y Y I+ Sbjct: 61 GYMCNFFTNSRIPPENLQRVINNNL--PPDIVVLSSEEVSSEFHSRFCSKGKTYEYTILN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P+A+ + + LD + M+IA+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 KSEPIAIGRNYVFHFKYKLDIDKMKIASKYFIGTHDFSAFQTKGSSVKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+LI+ + FL+ +R VG+L +G K +E ++++DR++ G P G Sbjct: 179 KSGDLIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIEYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|167627942|ref|YP_001678442.1| tRNA pseudouridine synthase A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189029995|sp|B0U0B1|TRUA_FRAP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167597943|gb|ABZ87941.1| tRNA-pseudouridine synthase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 258 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + IEY G Y GWQRQ + SIQ +EKA+ + + + V AGRTD+GVHA Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSPSIQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + NA L I IL++ VD F++RF+A R+Y Y I Sbjct: 61 VVNFHSDADRNLSSWMRGTNALL--PQGIKILDIKEVDNDFNSRFTATNRTYNYIIYNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L+ + M A ++L+G DFT+FRS CQ+++P R I + Sbjct: 119 ISSPILAEHCLWENRQLNIDKMNQACKYLLGEQDFTSFRSSQCQSNTPFRNIQKAEFIKQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I VV +FLH IR+F+GSL +G + ++ L+A+DR + A GLY Sbjct: 179 GSFIVFEVVGNAFLHHMIRNFIGSLLKIGLEFESPEWIKLVLEAKDRTKAAETAKAHGLY 238 Query: 241 FDSVEY 246 F VEY Sbjct: 239 FVGVEY 244 >gi|323703515|ref|ZP_08115161.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531506|gb|EGB21399.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q Q+ +++Q +E A+ V E V V GAGRTD+GVHA Sbjct: 3 MKNIKLTVAYDGTNYHGFQEQRGTGLATVQEVLEAALSKVANETVQVIGAGRTDAGVHAR 62 Query: 59 RQVAHFD-LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + A+N+ L D I+++ V FHARFSA ++Y Y I Sbjct: 63 GQVVNFRSTNWPVPTEKIHLAVNSLL--PDDIAVIKAEEVPLDFHARFSATAKTYRYSIY 120 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L + A+ P+ LD E MR AAQ+L+G HDF +F++ +RTI ++ Sbjct: 121 NHRVMSPLHRLYAYHEPRPLDIEAMRQAAQYLLGTHDFKSFQAQGTPVKDTVRTIYRAEL 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S LI + + FL+ +R G+L VG GK + +++ ++A++R G PP Sbjct: 181 VSEPPLIHLYLRGNGFLYNMVRIITGTLLDVGKGKKSPPEMKSIIEARNRTRAGTTVPPH 240 Query: 238 GLYFDSVEY 246 GL VEY Sbjct: 241 GLCLMEVEY 249 >gi|254720140|ref|ZP_05181951.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|265985146|ref|ZP_06097881.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] gi|264663738|gb|EEZ33999.1| tRNA pseudouridine synthase A [Brucella sp. 83/13] Length = 251 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 131/248 (52%), Positives = 173/248 (69%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++QG+IE+A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQGAIEQAFKKFCGEELTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL ++W + A+NA+L + + ISILN+ F ARFSA R YLYRI R Sbjct: 61 VAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEARDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLVGVDYA 248 >gi|16124533|ref|NP_419097.1| tRNA pseudouridine synthase A [Caulobacter crescentus CB15] gi|221233219|ref|YP_002515655.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] gi|42559871|sp|Q9ABF0|TRUA_CAUCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789610|sp|B8GYF0|TRUA_CAUCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13421415|gb|AAK22265.1| tRNA pseudouridine synthase [Caulobacter crescentus CB15] gi|220962391|gb|ACL93747.1| tRNA pseudouridine synthase A [Caulobacter crescentus NA1000] Length = 247 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 120/246 (48%), Positives = 162/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G Y G+Q Q S+QG+IE A+ G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGRPYAGFQAQATLPSVQGAIEAAVKAFCGQEVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L + + + ++ +HARFSA R YLYRI+ R+ Sbjct: 61 VVHVDLDKDWPAQTVFNALNAHLTREAVSIL-SAEVAEEGWHARFSANERRYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+KGR W + K LD E M AAQHL+G HDFTTFR +HCQ+ SP++T+D V Sbjct: 120 APPALDKGRVWHMKKDLDHEAMHAAAQHLIGLHDFTTFRDMHCQSKSPVKTLDVARVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + ARSFLH Q+RS G+L VG G+WT D++ AL+A+DR+ECGP+AP +GLY Sbjct: 180 GEEIHLDFEARSFLHRQVRSMTGTLVEVGAGRWTVDDVKAALEARDRRECGPVAPADGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LVGVGY 245 >gi|113969768|ref|YP_733561.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] gi|123325149|sp|Q0HKB3|TRUA_SHESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113884452|gb|ABI38504.1| tRNA pseudouridine synthase A [Shewanella sp. MR-4] Length = 261 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDSFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR++ CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDADKMHVAAQALLGEQDFTSFRAVQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|85713817|ref|ZP_01044807.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] gi|85699721|gb|EAQ37588.1| tRNA pseudouridine synthase A [Nitrobacter sp. Nb-311A] Length = 245 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 128/246 (52%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYRLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDCVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHDAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I +ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITLARSYLHSQVRSMVGSLVWVGHGRWSADDLSSALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|256855196|ref|ZP_05560557.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|307291679|ref|ZP_07571554.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|256709709|gb|EEU24756.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|306497298|gb|EFM66840.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|315028842|gb|EFT40774.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] Length = 249 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IE+ + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEETLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|296159699|ref|ZP_06842522.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] gi|295890143|gb|EFG69938.1| tRNA pseudouridine synthase A [Burkholderia sp. Ch1-1] Length = 270 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTEIDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +PI+ + DV Sbjct: 119 VRSPMLATRAGWVHTALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPIKHLHQIDVRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|160894723|ref|ZP_02075498.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] gi|156863657|gb|EDO57088.1| hypothetical protein CLOL250_02274 [Clostridium sp. L2-50] Length = 245 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I + E + V GA RTD+GVHA Sbjct: 1 MKRVKLVVAYDGTNYHGWQVQDNGITIEEVLNRTISELVQEDIKVIGASRTDAGVHACGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L D I I VD FH R++ ++Y Y I+ R+ Sbjct: 61 VAVFDTESRIPGDKFSFALNQRL--PDDIRIQESCEVDADFHPRYADTVKTYEYNILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ A +D E M AA +LVG HDF +F S Q + +RTI +V Sbjct: 119 FEMPSKRLYAAFCYYPMDIERMNQAAAYLVGEHDFKSFCSAGAQVQTTVRTIYAVNVTKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ IR+ FL+ +R G+L VG G +++ L+A+DR + GP A +GL Sbjct: 179 DDMVHIRITGNGFLYNMVRIIAGTLMQVGTGLMEPERVKEILEARDRSKAGPTAVAKGLT 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LVEIRY 244 >gi|307266981|ref|ZP_07548497.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] gi|306917966|gb|EFN48224.1| tRNA pseudouridine synthase A [Thermoanaerobacter wiegelii Rt8.B1] Length = 244 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q+N ++Q ++KAI VTGE V + GA RTD+GVHAL Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQENAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + L ALN+ L D I ++ V+ FHAR+SA R+ Y Y I+ R+ Sbjct: 61 VANFRTNTKIPAEKLPYALNSVL--PDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P+ + W I L E M+ AA +L+G HDF+ F++ +S IRT+ + Sbjct: 119 FPMPTMRNYCWHISYPLSIEKMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A FL+ +R VG+L VG GK ++ L+++DR + G APP+GLY Sbjct: 179 EEFINIEIEANGFLYNMVRIIVGTLSYVGLGKIEENEVYDILKSRDRTKAGITAPPQGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LIKIMY 244 >gi|165976323|ref|YP_001651916.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307250146|ref|ZP_07532106.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307256957|ref|ZP_07538734.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|238687566|sp|B0BPI7|TRUA_ACTPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165876424|gb|ABY69472.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306857811|gb|EFM89907.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306864532|gb|EFM96438.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 262 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + + +V+ G Sbjct: 119 RSAILPKGVSHYHYELDHQKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHYLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVGSLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|297582482|ref|YP_003698262.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] gi|297140939|gb|ADH97696.1| tRNA pseudouridine synthase A [Bacillus selenitireducens MLS10] Length = 261 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 128/248 (51%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M R + IEY+GSG+ G+Q+Q N ++QG +E+A+ ++ E +GRTD+GVH +R Sbjct: 1 MRRMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCTSSGRTDTGVHGVR 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALN+ L D I +L VD FHAR+ + + Y YR+ T Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLL--PDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P ++D E MR AA+HL G HDFT+ S +RT+ + Sbjct: 119 KRQTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++ FL+ +R +G+L VG G W + ++ Q+R+ GP AP GL Sbjct: 179 REDGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGL 238 Query: 240 YFDSVEYS 247 Y + V Y+ Sbjct: 239 YLEDVFYT 246 >gi|288554758|ref|YP_003426693.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] gi|288545918|gb|ADC49801.1| tRNA pseudouridine synthase A [Bacillus pseudofirmus OF4] Length = 247 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R II Y+G+ + G+Q Q N ++Q IE+A+ V G+ V V +GRTD+GVHA Sbjct: 1 MNRIACIISYDGTNFSGYQVQPNKRTVQLEIEQALKRVHKGQEVSVTASGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L + + + FHAR+ + Y YR++ Sbjct: 61 QVIHFDSPFRIPAAQWPKALNACLPDDIRVLSAHYAEK--DFHARYHTTGKEYRYRVLNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + +LD + MR AA +L+G HDF+ F + + +RT+ D+N Sbjct: 119 EDPDVFRRHHTAHVLYALDIDKMRQAAAYLIGTHDFSAFCAANTSVIDKVRTLYAVDINV 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FL+ +R VG+L VG GK T+ ++ AL+ R + G APP+GL Sbjct: 179 HEDELHFILRGNGFLYNMVRIIVGTLLEVGYGKRTAESVDTALRTCKRDDAGKTAPPQGL 238 Query: 240 YFDSVEYS 247 Y SV+Y+ Sbjct: 239 YLWSVQYN 246 >gi|260598738|ref|YP_003211309.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] gi|260217915|emb|CBA32500.1| tRNA pseudouridine synthase A [Cronobacter turicensis z3032] Length = 262 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E V V AGRTD+GVHA Q Sbjct: 1 MRKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +NA L I++ + V +FHARFSA R Y Y I + Sbjct: 61 VVHFETTAVRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V F Sbjct: 119 LRPAVLSQGVTHYHLPLDAQRMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVERF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +F+H +R+ VGSL +G G + + + L A+DR A EGLY Sbjct: 179 GAYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEGLY 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LVSVDY 244 >gi|257084178|ref|ZP_05578539.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256992208|gb|EEU79510.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 249 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|227555887|ref|ZP_03985934.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256964165|ref|ZP_05568336.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257418666|ref|ZP_05595660.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|307274205|ref|ZP_07555413.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|227175054|gb|EEI56026.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|256954661|gb|EEU71293.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|257160494|gb|EEU90454.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|306509167|gb|EFM78229.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|315573548|gb|EFU85739.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315582104|gb|EFU94295.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] Length = 249 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|117919927|ref|YP_869119.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] gi|166229837|sp|A0KV94|TRUA_SHESA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|117612259|gb|ABK47713.1| tRNA pseudouridine synthase A [Shewanella sp. ANA-3] Length = 261 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLEQALSKVANEPISLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWAKEVDDTFHARFSATARRYRYVIYNHNF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M +AAQ L+G DFT+FR+I CQ+ +P R + V G Sbjct: 119 RPGILRHGVSHYHGDIDTDKMHVAAQALLGEQDFTSFRAIQCQSKTPFRNVHSVKVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDISANAFLHHMVRNIVGSLLEIGLGNQPLTWMADLLALKDRNQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|146312509|ref|YP_001177583.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] gi|166991163|sp|A4WCV2|TRUA_ENT38 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145319385|gb|ABP61532.1| tRNA pseudouridine synthase A [Enterobacter sp. 638] Length = 270 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY+GS Y+GWQRQ S+Q +EKA+ V + + V AGRTD+GVH QV Sbjct: 10 HRIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANQPIAVCCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 70 VHFETTSVRKDAAWTLGVNANL--PGDIAVRWVKDVPDDFHARFSATARRYRYIIYNQRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G Sbjct: 128 RPAVLGQGVTHFYEPLDAERMQRAAQSLIGENDFTSFRAVQCQSRTPWRNVMHINVSRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|153938429|ref|YP_001392800.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152934325|gb|ABS39823.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|295320780|gb|ADG01158.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKNKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|319898267|ref|YP_004158360.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] gi|319402231|emb|CBI75764.1| tRNA pseudouridine synthase A [Bartonella clarridgeiae 73] Length = 247 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 130/247 (52%), Positives = 166/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ N +IQGSIE+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQANLRTIQGSIEQAIFHFSGQKLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + ISILN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTHTVRDALNAHLQKQGEDISILNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P L R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPVLNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPIRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|227520026|ref|ZP_03950075.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227072574|gb|EEI10537.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 249 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122317314|sp|Q0AUL4|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 249 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y G+Q QKN +++Q +EKAI+ ++GE + AGRTD+GVHA Q Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN+ L + I +L +F+ RF A+++ Y Y I ++ Sbjct: 61 VVAFDSCSTIPGDRWAYALNSQL--PEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E M+ AA+ L GR +F +F + A + R I H ++ Sbjct: 119 KKATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A FL+ +R G+L VG GK+ L + + +QDR GP APP+GLY Sbjct: 179 GPCLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLQVFY 244 >gi|170756303|ref|YP_001783087.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169121515|gb|ACA45351.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIMVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|209547671|ref|YP_002279588.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238057734|sp|B5ZN21|TRUA_RHILW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209533427|gb|ACI53362.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 268 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 150/247 (60%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V + GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL + W P L ALNA+L+ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKAWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVGRHDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFLQVDY 247 >gi|120598385|ref|YP_962959.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] gi|166229838|sp|A1RIB0|TRUA_SHESW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120558478|gb|ABM24405.1| tRNA pseudouridine synthase A [Shewanella sp. W3-18-1] Length = 261 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHSVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|301156483|emb|CBW15954.1| pseudouridylate synthase I [Haemophilus parainfluenzae T3T1] Length = 264 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D IS+ +VD +FHARFSA R Y Y + + Sbjct: 61 VHFETTAVRPEKAWAFGTNANL--PDDISVSWAKVVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPWRNVHHLNVVRKG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G ++ L+ +DRK P A PEGLY Sbjct: 179 QFVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVIY 243 >gi|86148380|ref|ZP_01066673.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218708902|ref|YP_002416523.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] gi|254764875|sp|B7VL84|TRUA_VIBSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85833863|gb|EAQ52028.1| tRNA pseudouridine synthase A [Vibrio sp. MED222] gi|218321921|emb|CAV17914.1| tRNA pseudouridine synthase A [Vibrio splendidus LGP32] Length = 264 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ++ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQRDVKSVQEELEKALSVVANHPVEVMCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V NA + I++ + V++ FHARFSA R Y Y I Sbjct: 61 VHFETNVDRKMVAWTMGANAN--MPKDIAVRWATEVNEDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGHLDEKKMHEAGQYLLGENDFTSFRATHCQSRSPWRNMIHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +F+H +R+ GSL VG G ++ L+A+DRK G A EGLY Sbjct: 179 HYIVIDIKANAFVHHMVRNITGSLIAVGKGDQKPEWIQWLLEAKDRKVAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|75677245|ref|YP_319666.1| tRNA pseudouridine synthase A [Nitrobacter winogradskyi Nb-255] gi|123759229|sp|Q3SN27|TRUA_NITWN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74422115|gb|ABA06314.1| tRNA pseudouridine synthase [Nitrobacter winogradskyi Nb-255] Length = 255 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 129/246 (52%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQTNGPSVQGALEAAVKAICGDDVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R ++P L LNA+L+ I +L IV F ARFSA RR Y+YRI R+ Sbjct: 61 VAHCDIARHFMPDRLRDGLNAHLR-PHPIGVLEAEIVPDSFEARFSARRRHYIYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ GR W +P+ LD E M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGRVWRVPRPLDTEAMHAAAQRLLGKHDFTTFRDTECQAKSPEKTLDQLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W + DL AL A+ R+ CGP+APP+GLY Sbjct: 180 GDNVSIITSARSYLHSQVRSMVGSLVWVGHGRWNADDLSGALAARRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LARVDY 245 >gi|260893342|ref|YP_003239439.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] gi|260865483|gb|ACX52589.1| tRNA pseudouridine synthase A [Ammonifex degensii KC4] Length = 259 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y+G+ + G+QRQ ++QG +E+A+ +T E V GAGRTD+GVHA QV Sbjct: 6 VALKVAYDGTAFSGFQRQPGLRTVQGVLEEALARLTKETCQVKGAGRTDAGVHAEGQVVS 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F L ALN L +++L + V +QFH R+ A+ + Y Y R Sbjct: 66 FRTASSIPTPRLVPALNGLL--PPDVAVLAAAEVPEQFHPRYDAVSKVYRYTFFRRAVRC 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + A +P+ LD E MR AA +L GRHDF F++ S +RT+ + G Sbjct: 124 PLTRFYALHVPEPLDVERMREAAAYLGGRHDFRAFQNTGRPVKSSVRTVFSCRLEEAGPF 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A FL+ +R G+L +G GK + + AL+ +R+ GP APP GL Sbjct: 184 LYFWIEADGFLYQMVRVIAGTLLEIGRGKLEPSVILAALEKGERQLLGPTAPPHGLCLVQ 243 Query: 244 VEY 246 V+Y Sbjct: 244 VKY 246 >gi|319404987|emb|CBI78590.1| tRNA pseudouridine synthase A [Bartonella sp. AR 15-3] Length = 247 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQK+ +IQGSIEKA+F +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKSLRTIQGSIEKAVFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W I+ ALNA+L+ + I +LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKHWNTHIVRDALNAHLQKQGEDIVVLNVQSVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS HCQA SP+RT++ D+ Sbjct: 121 RSPPALNAKRVWWLPKPLDADAMHKAAQRLVGQHDFTTFRSAHCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGEEIVLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHAKNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLIKVDY 247 >gi|325567346|ref|ZP_08144013.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|325158779|gb|EGC70925.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 248 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A +G HDFT+F + RTI + Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRIAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLVHVAY 247 >gi|168178866|ref|ZP_02613530.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226950899|ref|YP_002805990.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|182670055|gb|EDT82031.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|226843785|gb|ACO86451.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSKPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR++ G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|241202830|ref|YP_002973926.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856720|gb|ACS54387.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 272 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 150/247 (60%), Positives = 188/247 (76%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V+V GAGRTDSGVHA+ Q Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGHSVQGAIEAAVLSLTGETVLVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+ + +SIL + + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILEVEAAPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK LD E M AAQ LVG+HDF+TFR+ HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGKHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+GL Sbjct: 181 NGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 241 YFMQVDY 247 >gi|239825725|ref|YP_002948349.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] gi|259550397|sp|C5D3U9|TRUA_GEOSW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239806018|gb|ACS23083.1| tRNA pseudouridine synthase A [Geobacillus sp. WCH70] Length = 248 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 R + Y+G+ +FG+Q Q ++QG +E+ + + G+ + V +GRTD+GVHA Q Sbjct: 3 KRIKCTLSYDGTHFFGYQIQPGKRTVQGELERVLEQMHKGKAIRVTASGRTDAGVHAYGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P KALNA L D I I ++ D FHARFSA + Y Y++ Q Sbjct: 63 VIHFDTFLSLSPDQWKKALNAQL--PDDIVIKDVQEADPSFHARFSAKAKEYRYKVRIAQ 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + P LD E MR A + + G HDFT+F S +RTI D+ Sbjct: 121 ERDVFLRNYCYHYPYPLDMEAMRHALRLIEGTHDFTSFCSAKTDVDDRVRTIYKADMAMH 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L+E + FL+ +R VG++ VG GK + + A +A+DR+ G APP+GLY Sbjct: 181 DDLLEFCFIGNGFLYNMVRIIVGTILEVGQGKRSIDSISHAFEAKDRQFAGKTAPPQGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LWKVYY 246 >gi|69247200|ref|ZP_00604262.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878755|ref|ZP_05658408.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881397|ref|ZP_05661050.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890614|ref|ZP_05670267.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615179|ref|ZP_05712949.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|293562977|ref|ZP_06677444.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|314937639|ref|ZP_07844965.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314942862|ref|ZP_07849675.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948002|ref|ZP_07851406.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314950919|ref|ZP_07853988.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991433|ref|ZP_07856910.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995046|ref|ZP_07860166.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68194965|gb|EAN09433.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257812983|gb|EEV41741.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817055|gb|EEV44383.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257826974|gb|EEV53600.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|291605103|gb|EFF34570.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590772|gb|EFR69617.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313593913|gb|EFR72758.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313596928|gb|EFR75773.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313598334|gb|EFR77179.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313643016|gb|EFS07596.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645600|gb|EFS10180.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 248 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A L+G HDFT+F + IRTI + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKIRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|322807772|emb|CBZ05347.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNNL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKRKPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|257088682|ref|ZP_05583043.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|256997494|gb|EEU84014.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|315160761|gb|EFU04778.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315579360|gb|EFU91551.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 249 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|254496537|ref|ZP_05109407.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] gi|254354236|gb|EET12901.1| tRNA pseudouridine synthase A [Legionella drancourtii LLAP12] Length = 262 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSHYHGWQAQTGLHTVQQALEHALSKVADCPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +E N++L S + + + + F+AR+SA R Y Y I Sbjct: 61 VHFDTDKERSIRAWIHGANSFL--SKDVCVKWGKELSETFNARYSATARRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R I V Sbjct: 119 RPALLRSNVTWQYRQLDHRLMHQAAQLLLGENDFTSFRSVECQSNTPMRNIHKLQVTRTN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A +FLH +R+ G L VG GK + +++ L+A+DR+ AP GLY Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKHPVSWVDEVLKARDRRLGAETAPAYGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVTY 243 >gi|225570923|ref|ZP_03779946.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] gi|225160385|gb|EEG73004.1| hypothetical protein CLOHYLEM_07027 [Clostridium hylemonae DSM 15053] Length = 282 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 1/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I Y+G+ Y GWQ Q NG +I+ + + +TGE + V GA RTDSGVHAL V Sbjct: 37 RRIRLVIAYDGTDYCGWQIQPNGITIEEVLNGVLTKLTGEDIHVIGASRTDSGVHALGNV 96 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD P + ALN L I + R + ++Y Y I Sbjct: 97 AVFDTASSIPPERMAYALNQRLPKDIVIVRSDEVPAGWHPRYR-DVVIKTYEYHIYNAPV 155 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L++ + I L+ E MR A++L+G HDF +F ++ +RT+ ++S G Sbjct: 156 QNPLKRRTSTHISFPLNVEKMREGAKYLIGEHDFASFCNVRTSVKDTVRTVTELRIDSDG 215 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +R+ FL+ +R G+L VG G + +++ L+A++R G PP GL Sbjct: 216 PEIIMRITGNGFLYNMVRIIAGTLIRVGRGFYEPEKVKEILEAKERTGAGVTVPPNGLVL 275 Query: 242 DSVEY 246 ++Y Sbjct: 276 VEIDY 280 >gi|311278721|ref|YP_003940952.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] gi|308747916|gb|ADO47668.1| tRNA pseudouridine synthase A [Enterobacter cloacae SCF1] Length = 270 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVTVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ E +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAERKDAAWTLGVNANL--PGDIAVRWVKYVADDFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSQGVTHYHQPLDAARMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVERYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 SV+Y Sbjct: 249 SVDY 252 >gi|319406472|emb|CBI80113.1| tRNA pseudouridine synthase A [Bartonella sp. 1-1C] Length = 247 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 128/247 (51%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQKN +IQGSIE AIF +G+ + + AGRTD+GVHA+ Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQKNLRTIQGSIENAIFHFSGQKLTITTAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + I++LN+ V F ARF A +R YL++I+ R Sbjct: 61 VAHIDFEKNWNTNTVRDALNAHLQKQGENIAVLNVQNVPDNFDARFCATKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK LD + M AAQ LVG+HDFTTFRS +CQA SP+RT++ D+ Sbjct: 121 RSPPALNTKRVWWLPKPLDADAMHKAAQKLVGQHDFTTFRSAYCQAKSPVRTLERLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A++R CG +APP GL Sbjct: 181 EGDEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAEDLEAALHARNRARCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLMKVDY 247 >gi|315151105|gb|EFT95121.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 249 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGRSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLAEVRY 247 >gi|260558318|ref|ZP_05830514.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|261207023|ref|ZP_05921712.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289565342|ref|ZP_06445792.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|294615363|ref|ZP_06695236.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294618289|ref|ZP_06697870.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|260075492|gb|EEW63798.1| tRNA pseudouridine synthase [Enterococcus faecium C68] gi|260078651|gb|EEW66353.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289162832|gb|EFD10682.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291591737|gb|EFF23373.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291595383|gb|EFF26695.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] Length = 248 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A L+G HDFT+F + +RTI + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|332290494|ref|YP_004421346.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] gi|330433390|gb|AEC18449.1| tRNA pseudouridine synthase A [Gallibacterium anatis UMN179] Length = 265 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y+GS YFGWQ+Q++ SIQ +E+A+ + E + + AGRTD+GVHA Q Sbjct: 1 MKKIALGISYDGSRYFGWQKQQSVQSIQNELEQALSTIANEPIEIFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ N +L + I++ + V++ FHARFSA+ R Y Y I R Sbjct: 61 VIHFETSASRPLQAWIFGTNVHL--PNDIAVKWSTEVNEDFHARFSALSRRYRYIIYNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD + M IA Q+L+G +DF++FR+ CQ+ SP R + H V+ Sbjct: 119 QRFAILPTGITHHHYPLDEKLMHIAGQYLLGENDFSSFRAAQCQSKSPYRNVHHLQVSRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + + A +F+H +R+ VGSL +VG+GK ++ LQ +DR P A GLY Sbjct: 179 GDYLIVDIQANAFVHHMVRNIVGSLLVVGEGKQKPEWIKWLLQQRDRSCAAPTAKAAGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVKVHY 244 >gi|257876163|ref|ZP_05655816.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|257810329|gb|EEV39149.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] Length = 248 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + +HG+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIHGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ + IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKAVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A +G HDFT+F + RTI + Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLVHVAY 247 >gi|297182649|gb|ADI18807.1| pseudouridylate synthase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGPSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGVNQHIGNKPVTVLKINK-TSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL+K +AW I K LD + M+ A+ L+G HDF+TFR+ C A SPI+T+++ V Sbjct: 120 SPLALQKNKAWHIRKKLDVKAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISVKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ +RSFL Q+RS VGS+K +GDGKW D +K+ ++++R +C P AP GLY Sbjct: 180 KDKITLKFTSRSFLQQQVRSMVGSIKYLGDGKWKLDDFKKSFKSKNRLKCAPPAPACGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LTKIKY 245 >gi|308270748|emb|CBX27358.1| tRNA pseudouridine synthase A [uncultured Desulfobacterium sp.] Length = 246 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+G+ + GWQRQ NG +IQG IEKAIF +T + + + GAGRTD+GVHAL QV Sbjct: 3 KNFKLTIEYDGTAFNGWQRQLNGRTIQGEIEKAIFAMTKQKIALTGAGRTDAGVHALAQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F P + LN+ L I I V ++FH+R+ + + Y Y+I+ R Sbjct: 63 ANFICDTNLEPDSFYRGLNSLL--PGDIIIKLCEQVCEKFHSRYDSKSKLYRYKILNRPL 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 P A+ + W I LD + MR A + G DF F S IRT+ + + + Sbjct: 121 PSAIGRNYLWFIKSPLDLKAMREAVLFIAGTRDFKAFEGSGSPRKSTIRTVLRSELIENE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I+ + A FL +R+ VGSL VG GK D++ L ++DR++ APP GL+ Sbjct: 181 DNIIQFEIEADGFLRFMVRNIVGSLISVGLGKLKPLDIKTILDSKDRRKASATAPPGGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVKVRY 246 >gi|160941032|ref|ZP_02088370.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] gi|158435981|gb|EDP13748.1| hypothetical protein CLOBOL_05925 [Clostridium bolteae ATCC BAA-613] Length = 247 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + E + V GA RTDSGVHA Sbjct: 1 MKRIRLVVAYDGTQYHGWQIQPGAVTIESVLNEALTQLMREPIQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + P +C ALN L + I + V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTESQMPPDKICMALNQRL--PEDIRVQVSEEVPSDWHPRKCTCIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +E+ + LD + M+ AA L G HDF +F S+ Q + +RT+ DV Sbjct: 119 INMPMERLYSHFCYYKLDVDRMQAAANMLAGEHDFKSFCSVRTQVTDTVRTVYRIDVTRN 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV FL+ +R G+L VG G + D+ L+A+DR+ GP AP GL Sbjct: 179 ADDIITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARGL 238 Query: 240 YFDSVEY 246 ++Y Sbjct: 239 TLIEMKY 245 >gi|257866559|ref|ZP_05646212.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257872925|ref|ZP_05652578.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257800517|gb|EEV29545.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257807089|gb|EEV35911.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] Length = 248 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ + + G+GRTD+GVHA Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTKMNNGQPIQIQGSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ + L+ + + +++ ++ IVD FHAR+ + ++Y +R+ Sbjct: 61 QVIHFDFPQKRPLEKMRFGLDT--QTPEDVAVKSVEIVDDTFHARYLVVEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A +G HDFT+F + RTI + Sbjct: 119 KPRSPFRRHYASYYPYPLDLEKIQRALPDFLGTHDFTSFCATGSSVDDKTRTIHEASMAV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NDAGDELIFTFRGDGFLYKMIRIMVGTLLKIGNGRLAPDSIPAIIAQKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLVHVAY 247 >gi|254293237|ref|YP_003059260.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] gi|254041768|gb|ACT58563.1| tRNA pseudouridine synthase A [Hirschia baltica ATCC 49814] Length = 247 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 119/246 (48%), Positives = 158/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS Y GWQRQK S+Q +E+AI GE V VHGAGRTD+GVHA+ Q Sbjct: 1 MARFKLTIEYDGSPYVGWQRQKTHRSVQQVLEEAIPKFAGETVTVHGAGRTDAGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +E+ + A+N ++K + +SIL V +FHARFSA R Y+YRII R+ Sbjct: 61 VAHIDLSKEFTTDKVRDAMNHFMK-DEPVSILLAEEVSDEFHARFSAYARHYIYRIIDRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++ AW +D + M AAQ LVG+HDF+TFR CQA SP++T+ +V Sbjct: 120 ADLTFDRNLAWRAMSPVDADAMHEAAQCLVGKHDFSTFRDAQCQAESPVKTLSKIEVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I V A SFLH Q+RS GSL +G GK + +++ L A DR CG +APP+GLY Sbjct: 180 GDEINIYVSAPSFLHRQVRSITGSLMEIGRGKKPISWMQEILGAADRSRCGTVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LSQVDY 245 >gi|293374636|ref|ZP_06620951.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325845439|ref|ZP_08168732.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] gi|292646726|gb|EFF64721.1| tRNA pseudouridine synthase A [Turicibacter sanguinis PC909] gi|325488545|gb|EGC90961.1| tRNA pseudouridine synthase A [Turicibacter sp. HGF1] Length = 258 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ + G+QRQ ++QG IE A+ ++ + V +H +GRTD+GVHA Q Sbjct: 1 MKRIKCTVAYDGTLFNGYQRQPGQRTVQGEIEAALEKISKQPVTIHSSGRTDTGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V +ALN+ L + I I++ V +FH+R+ + Y YR+ + Sbjct: 61 VFHFDSVVNMDGSRYVRALNSIL--PEDIYIIDSQEVHPEFHSRYHGKVKEYRYRL-SLN 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +++ + SLD E MR A +L+G H+FT+F + +RTI D+ Sbjct: 118 EYNPMKRNYVYYHRFSLDVEKMREAMTYLLGTHNFTSFCG-NLDDIDKVRTIYQADLIDE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V FL IR VG+L +G+GK D++ ++A++RK G A P+GLY Sbjct: 177 DGELTFIFVGNGFLRYMIRIMVGTLIQIGEGKKKPEDIKTIIEAKNRKLAGHTAKPQGLY 236 Query: 241 FDSVEY 246 V+Y Sbjct: 237 LQRVDY 242 >gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1] Length = 257 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y G+Q Q N ++QG++EK + V E V + G RTD+GVHA Sbjct: 1 MRNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + C+ +N L D ISIL+ V FHARF + Y+Y++ + Sbjct: 61 CFNVKTNSRISTLGFCRGVNGEL--PDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + D E R AAQ+ VG HDF++F + S+ +RTI F + + Sbjct: 119 SKDPFAPDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + V FL+ IR G+L V + +++ D+ + L+A+DR + G A GLY Sbjct: 179 GDTVIMLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLY 238 Query: 241 FDSVEYS 247 + V YS Sbjct: 239 LNRVFYS 245 >gi|92119152|ref|YP_578881.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] gi|123264920|sp|Q1QH76|TRUA_NITHX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91802046|gb|ABE64421.1| tRNA pseudouridine synthase A [Nitrobacter hamburgensis X14] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQ Q NG S+QG++E A+ + G+ V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGGPFCGWQYQDNGPSVQGALEAAVKAICGDAVRVHGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + P L LNA+L+ I +L IV F ARFSA+RR Y+YRI R+ Sbjct: 61 VAHCDIAKHFAPNRLRDGLNAHLR-PHPIGVLTAEIVPDTFEARFSALRRHYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LA++ G W +P+ LD M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLAIDVGHVWRVPRPLDTLAMHAAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG G+W++ DL AL + R+ CGP+APP+GLY Sbjct: 180 GDTVTIVTSARSFLHSQVRSMVGSLVWVGHGRWSADDLSNALAERRREACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVRVDY 245 >gi|296104004|ref|YP_003614150.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058463|gb|ADF63201.1| tRNA pseudouridine synthase A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 270 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 HKVALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVLCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 70 VHFETTAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYVIYNQRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ FG Sbjct: 128 RPAVLSQGVTHFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRFG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGHQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010] gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010] Length = 259 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 139/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + GWQ Q N ++QG +EKA +V + V AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYAGTDFCGWQNQPNTRTVQGELEKAASVVANHSIDVFAAGRTDTGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ + VD +F+ARF+AI+R Y Y I+ R + Sbjct: 61 VHFDTDAIRSERGWLLGINANL--PKDINVAWMKPVDDEFNARFTAIKRRYRYLILNRLS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R W LD E M+ AA LVG+HDF+ FR+ CQA SPI+T+D V Sbjct: 119 RSAVHHNRMWWHHHPLDIERMQAAADQLVGKHDFSAFRASECQARSPIKTLDKITVRRQQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + V A+SFLH +R+ VG + +GDG L++ DR + G APP+GLY Sbjct: 179 DCIAVDVEAKSFLHHMVRNLVGVMAAIGDGSKPVDWAGDVLRSVDRSQGGVTAPPQGLYL 238 Query: 242 DSVEY 246 VEY Sbjct: 239 VDVEY 243 >gi|148381387|ref|YP_001255928.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153931537|ref|YP_001385762.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153934471|ref|YP_001389169.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148290871|emb|CAL85007.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152927581|gb|ABS33081.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152930385|gb|ABS35884.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V GA RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGASRTDSGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYICNFFTNTKIPPENLQKVINNIL--PPDIVVLSSEEASSEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSKPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|325578129|ref|ZP_08148264.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] gi|325159865|gb|EGC71994.1| tRNA pseudouridine synthase A [Haemophilus parainfluenzae ATCC 33392] Length = 264 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y GWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D IS+ +VD +FHARFSA R Y Y + + Sbjct: 61 VHFETTAVRPEKAWAFGTNANL--PDDISVSWAKVVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPEGITHCHLDLDEKKMHQAGQFLLGENDFSSFRAAQCQSNTPWRNVHHLNVVRKG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G ++ L+ +DRK P A PEGLY Sbjct: 179 QYVIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVIY 243 >gi|255284006|ref|ZP_05348561.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255265459|gb|EET58664.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+ + + + GE + V GA RTD+GVHAL Sbjct: 1 MKRVKLIVAYDGTNYSGWQIQPNAVTIESMLNLHLSELLGEPIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD + A+N L I I + V FH RF ++Y YRI+ R+ Sbjct: 61 VAVFDTSARMPAEKISYAMNTRL--PQDIRIQDSCEVAADFHPRFCKTIKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + LD ENMR A +LVG HDF + + + + +RTI D+ Sbjct: 119 FPDPTRRLYSLFYYYPLDVENMRRALAYLVGEHDFKSLCTHKEEVENTVRTIYEADIQKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L VG G + +++ L A++R+ G APP+GL Sbjct: 179 GDMISIRISGNGFLYNMVRIIVGTLLRVGSGYYPPEYMQELLAAKNRQAAGETAPPQGLT 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LLEIRY 244 >gi|293567901|ref|ZP_06679242.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291589486|gb|EFF21293.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] Length = 248 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + +V + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEVVSEDFHARYLVTEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A L+G HDFT+F + +RTI + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|229917326|ref|YP_002885972.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] gi|259550390|sp|C4KZL4|TRUA_EXISA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229468755|gb|ACQ70527.1| tRNA pseudouridine synthase A [Exiguobacterium sp. AT1b] Length = 246 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y G+Q Q NG++IQ IE + + V + +GRTD+ VHAL Q Sbjct: 1 MRRIKLIVAYDGTHYAGYQVQPNGNTIQAEIESVLARMHRHPVKIIASGRTDARVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E KALNA L D I + +D FHAR+ A + YR RQ Sbjct: 61 VIHFDTTLEMPAERFVKALNAML--PDDILVKQAEEMDDTFHARYGA--KRKEYRYHIRQ 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + L E MR A + L+G HDFT+F + +RTI +V Sbjct: 117 TEDPFRRHYAATVTYKLSLEAMRQAMERLIGTHDFTSFSVTKAEVEDRVRTIYEAEVLEM 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R V FL+ Q+R VG++ VG GK+ D+ + L+A+DR+ G APP GLY Sbjct: 177 GDEIIFRFVGSGFLYNQVRIMVGTVIEVGRGKYQPADITQMLEAKDRRVAGITAPPHGLY 236 Query: 241 FDSVEY 246 +V Y Sbjct: 237 LWNVNY 242 >gi|239623391|ref|ZP_04666422.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522357|gb|EEQ62223.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 247 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q +I+ + +A+ + GE V V GA RTDSGVHA Sbjct: 1 MKRVRLVVAYDGTHYHGWQIQPGKVTIESRLNEALTSLLGEPVQVIGASRTDSGVHARGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L + I + + VD +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTSHRMPADRICMALNQRL--PEDIRVQSSEEVDPDWHPRKCRCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +++ + +LD E M+ AA LVG HDF +F S+ Q + +RTI +V Sbjct: 119 IEMPMQRFYSHFCYFNLDLEKMQKAAGLLVGEHDFKSFCSVRTQVTDTVRTIYSIEVKRD 178 Query: 181 GNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + IRV FL+ +R G+L VG G+ D+ L+A+DR+ GP AP GL Sbjct: 179 EEDMIGIRVTGNGFLYNMVRIIAGTLMAVGMGQIAPEDMGAILEARDRRAAGPTAPARGL 238 Query: 240 YFDSVEY 246 +EY Sbjct: 239 TLIQMEY 245 >gi|197103844|ref|YP_002129221.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] gi|196477264|gb|ACG76792.1| tRNA pseudouridine synthase [Phenylobacterium zucineum HLK1] Length = 246 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + G+Q Q +IQG+IE+A+ GE + + AGRTD+GVHA Q Sbjct: 2 MPRYRLLIEYDGRPFNGFQAQDGLPTIQGAIERAVKAFCGEDLRLQAAGRTDTGVHARGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL ++W + ALNA+L I++L S+ + +HARFSA R YLYRI+ R Sbjct: 62 VVHVDLAKDWPAETVRNALNAHLV-PQPIAVLEASVAPEGWHARFSAKERRYLYRILNRM 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL++GR W + K LD E M AAQ LVG HDFTTFR + CQA SP++T+D V Sbjct: 121 APPALDQGRVWHVKKPLDAEAMHEAAQALVGHHDFTTFRDLGCQAKSPMKTLDLASVRRE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + +RSFLH Q+RS G+L VG G+WT DL AL+A+DR+ CGP+AP EGLY Sbjct: 181 GDEVLLEFASRSFLHRQVRSMTGTLAEVGVGRWTRADLVAALEARDRRACGPVAPAEGLY 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LTGVAY 246 >gi|257885664|ref|ZP_05665317.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|293553909|ref|ZP_06674515.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|257821520|gb|EEV48650.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|291601961|gb|EFF32207.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 248 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A L+G HDFT+F + +RTI + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|114769437|ref|ZP_01447063.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] gi|114550354|gb|EAU53235.1| tRNA pseudouridine synthase A [alpha proteobacterium HTCC2255] Length = 255 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 112/250 (44%), Positives = 153/250 (61%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ++ S+Q +IE AI + E + GAGRTD+GVHA Q Sbjct: 1 MPRYALKVEYDGKPYHGWQRQRDVPSVQQTIEIAISKIAPEKPEIQGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + W L +A+N +L+ + D FHARFSA R Y++R+++R+ Sbjct: 61 IAHFDLNKPWDSFRLSEAINYHLRPEPISITKCSIVAD-DFHARFSAKERRYVFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----TIDHFD 176 AP ++ G W I LD E M+ A++LVG+HDFTTFRS CQA SPI+ Sbjct: 120 APAIVDVGWVWQIQHDLDLELMQEGAKYLVGKHDFTTFRSSICQAQSPIKSLKEISIKEI 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E ++ARSFLH Q+RSF+G+L+ VG G W + +AL A+DR +CGP+ PP Sbjct: 180 SLEHGKEFEFTIIARSFLHNQVRSFIGTLERVGSGSWDPERVHEALIAKDRSKCGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAQVSY 249 >gi|260461124|ref|ZP_05809373.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] gi|259033158|gb|EEW34420.1| tRNA pseudouridine synthase A [Mesorhizobium opportunistum WSM2075] Length = 249 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 129/248 (52%), Positives = 173/248 (69%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEEAIEKFCGEAVRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + ++ + +V F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLVKAWPGDKVRDAVNAHLQAAGARVVILKAGVVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPSALEKGKVWWVPKRLDAGAMHEAAKILLGRHDFTTFRSTQCQANSPVRTLEQLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ D + AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGSWSANDFKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEYS 247 + V+YS Sbjct: 241 FLIGVDYS 248 >gi|146293537|ref|YP_001183961.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|166229836|sp|A4Y879|TRUA_SHEPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145565227|gb|ABP76162.1| tRNA pseudouridine synthase A [Shewanella putrefaciens CN-32] gi|319426837|gb|ADV54911.1| tRNA pseudouridine synthase A [Shewanella putrefaciens 200] Length = 261 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGYFGWQRQ S+QG +E+A+ +V E + + AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGSGYFGWQRQAEVDSVQGQLERALSIVANEPIGLFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFDTNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGNIDADKMHQAAQVLLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|157690932|ref|YP_001485394.1| tRNA pseudouridine synthase A [Bacillus pumilus SAFR-032] gi|166991159|sp|A8F9B7|TRUA_BACP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157679690|gb|ABV60834.1| tRNA-pseudouridine synthase I [Bacillus pumilus SAFR-032] Length = 247 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 ++ + Y+G+ + G+Q Q ++Q IE A+ + + V + +GRTDSGVHA Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALAKMHKQDELVPIVASGRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 61 QVIHFDTPLSIPMERWPFALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P LD + MR AA +L+G HDFT+F + + + +R I + + Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGYLIGTHDFTSFCAANTEVQDKVREIYTLEWKN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+RV FL+ +R G+L VG GK+ +++ L A++R+ G AP GL Sbjct: 179 VSDGLEMRVRGNGFLYNMVRIIAGTLLEVGSGKFHPDEIKAMLAARNREAAGKTAPSHGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWEVFY 245 >gi|270157075|ref|ZP_06185732.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|289164512|ref|YP_003454650.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] gi|269989100|gb|EEZ95354.1| tRNA pseudouridine synthase A [Legionella longbeachae D-4968] gi|288857685|emb|CBJ11528.1| tRNA-pseudouridine synthase I [Legionella longbeachae NSW150] Length = 262 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q ++Q ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVLEYDGSKYHGWQAQTGLHTVQQAVENALSKVADLPISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ +N++L I + + ++FHAR+SA R Y Y I Sbjct: 61 IHFDSEKQRSIRAWIHGVNSFL--PKDICVKWGKELSEEFHARYSATARRYRYVIYNSAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + LD M AAQ L+G +DFT+FRS+ CQ+++P+R + VN G Sbjct: 119 RPALLRSNVTWQYRQLDHRLMHQAAQVLLGENDFTSFRSVECQSNTPMRNVYKLQVNRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A +FLH +R+ G L VG GK +E+ LQA+DR+ AP GLY Sbjct: 179 DLVIIDITANAFLHHMVRNIAGVLIAVGSGKRPVFWVEEVLQAKDRRLGAETAPAYGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVNY 243 >gi|224369316|ref|YP_002603480.1| TruA1 [Desulfobacterium autotrophicum HRM2] gi|223692033|gb|ACN15316.1| TruA1 [Desulfobacterium autotrophicum HRM2] Length = 246 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + +EY+G+ Y GWQ Q N ++Q IEKA+ + + + + G+GRTD+GVHAL QV Sbjct: 3 TNFKLTLEYDGTPYSGWQVQNNCPTVQEEIEKALSRMLNQPIRISGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L ++LN+ LK + VD+ FH+R+SA + Y Y + R+ Sbjct: 63 ANFQAATTIGAAQLKRSLNSLLKGPIVV--HECRKVDQSFHSRYSARAKEYHYHFLNRED 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-DVNSF 180 P + + W I L M + G HDF F S+ +RT+ + Sbjct: 121 PCGVGRNYVWHIRTPLSIPAMEECCPIITGTHDFKAFEGSGSPRSTTVRTLFSTGFERTA 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ++ FL +R+ VG+L L G GK T + + L+ +DR G AP +GL+ Sbjct: 181 EDRFTFKIKGDGFLRFMVRNIVGTLVLAGAGKITPENFKTILEGKDRGRAGATAPAKGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVEVFY 246 >gi|253577209|ref|ZP_04854529.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] gi|251843453|gb|EES71481.1| tRNA pseudouridine synthase A [Paenibacillus sp. oral taxon 786 str. D14] Length = 261 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ YFG+Q Q G+++Q IE AI +TGE V +HG+GRTD+GVHA +Q Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HF C ALNA L I +L V FH+R SA R++Y Y I T + Sbjct: 61 PFHFHTDSRIPVERWCLALNARL--PSDIRVLTAREVPLTFHSRHSAKRKTYRYTINTNR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + P L+ + M+ + +LVG HDFT+F S S +RTI + Sbjct: 119 FPDVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTIYDARIVVD 178 Query: 181 ----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ V FL +R VG+L +G+GK T ++ L+A+DR Sbjct: 179 SLAKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILEAKDRTAA 238 Query: 231 GPLAPPEGLYFDSVEY 246 GP A +GL SVEY Sbjct: 239 GPTAESKGLMLWSVEY 254 >gi|170742366|ref|YP_001771021.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] gi|238688005|sp|B0UP40|TRUA_METS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168196640|gb|ACA18587.1| tRNA pseudouridine synthase A [Methylobacterium sp. 4-46] Length = 250 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+GSG+ GWQRQ ++Q ++E+AI G V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGSGFAGWQRQAADRTVQQALEEAIARFAGAPVRVHCAGRTDAGVHATHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL R+W + A NA+L+ + +++++ V F AR SA+RR Y YRI+ R+ Sbjct: 61 VVHLDLDRDWRTDTVRDASNAHLR-PEPVAVVSAERVRPDFDARHSALRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P SLD M AAQ L+GRHDF+ FR+ CQA+SP+RT+D DV Sbjct: 120 SPPALGRAYLWHVPWSLDAHAMHAAAQTLLGRHDFSAFRAAECQANSPVRTLDQLDVARI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLT 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|266620223|ref|ZP_06113158.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288868186|gb|EFD00485.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 354 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 91/241 (37%), Positives = 126/241 (52%), Gaps = 2/241 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +I+ + +A+ + E V V GA RTDSGVHA Sbjct: 1 MKRIKLIVAYDGTNYCGWQIQNNGRTIEEVLNEALTALLHEKVAVIGASRTDSGVHAEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L + I +L V +H R ++Y YRI+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQRL--PEDIRVLKSEEVPLTWHPRKCNCVKTYEYRILNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + A+ LD E M+ AA++LVG HDFT+F + QA +RTI DV Sbjct: 119 IEVPTLRLYAYFCYYPLDVEKMKQAAEYLVGEHDFTSFCAPRTQAEDMVRTIYSLDVGKT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IRV FL+ +R G+L VG G W +E+ L A+ R GP A GL Sbjct: 179 GDMITIRVSGSGFLYNMVRIIAGTLMKVGLGVWPPEHVEEILDARSRAAAGPTAVARGLT 238 Query: 241 F 241 Sbjct: 239 L 239 >gi|332307082|ref|YP_004434933.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174411|gb|AEE23665.1| tRNA pseudouridine synthase A [Glaciecola agarilytica 4H-3-7+YE-5] Length = 263 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+G+ GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGAGFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DT+S+ + V FHARFSA R Y Y I Sbjct: 61 VHFETNSQRPDRAWTLGINTYL--PDTVSVRWVKAVPDDFHARFSATARRYRYIIYNSTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMNQAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VHVTY 243 >gi|118581782|ref|YP_903032.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] gi|166228745|sp|A1AUF4|TRUA_PELPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118504492|gb|ABL00975.1| tRNA pseudouridine synthase A [Pelobacter propionicus DSM 2379] Length = 244 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQ Q NG ++Q +E+A+ + GE V + +GRTD+GVHA Sbjct: 1 MRTIKLTIEYDGTNYAGWQVQPNGLAVQQVLEEALLRLLGERVRLRSSGRTDAGVHARAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F R N +L D I+IL+ + +F A + Y Y I Sbjct: 61 VASFTTSRSLPLQAFVGGANRFL--PDDIAILSAAEAAPEFRPIQDARSKWYRYTIYNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + + LD + M++AA H GRHDF FR+ +C A + +R ID + S Sbjct: 119 VRSPLRRLFSWHVREPLDTDAMQLAAHHFPGRHDFAAFRASNCAAKTTLRRIDSVTIASE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V+ FL +R G+L VG G++ + L+ DRK+ G AP GL Sbjct: 179 GELIVIDVIGEGFLKNMVRVMAGTLVDVGRGRFEPERVAWLLENPDRKKAGVTAPACGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMDVSY 244 >gi|323493306|ref|ZP_08098429.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] gi|323312392|gb|EGA65533.1| tRNA pseudouridine synthase A [Vibrio brasiliensis LMG 20546] Length = 264 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +E A+ +V + V AGRTD+GVH QV Sbjct: 1 MRIALCIEYNGTQYFGWQRQREVKSVQEKLEHALSIVANHPIEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA L D I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFDTTASRKMVAWTMGANANL--PDDIAVRWAKEVPEEFHARFSATARRYRYIIFNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M AAQ+L+G +DFT+FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILSSGVSHYHGELDEKKMHQAAQYLLGENDFTSFRATHCQSRSPWRNMMHINVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ +E L A+DRK G A EGLY Sbjct: 179 QYVVIDIKANAFVHHMVRNITGSLICVGRGEQEPQWIEWLLAAKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|296333145|ref|ZP_06875599.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672848|ref|YP_003864519.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296149761|gb|EFG90656.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411091|gb|ADM36209.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 247 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ +NMR AA+HL+G HDFT+F ++ + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYHLNVQNMREAAKHLLGTHDFTSFCAVKTEVQDKVRTIYELDWAE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + D++ L+A+DR+ G AP GL Sbjct: 179 TDDGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDDVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 239 YLWNVFY 245 >gi|310816231|ref|YP_003964195.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] gi|308754966|gb|ADO42895.1| tRNA pseudouridine synthase A [Ketogulonicigenium vulgare Y25] Length = 255 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 112/250 (44%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ S+QG+IE A+ + + AGRTD+GVH Q Sbjct: 1 MPRYALLVEYDGRPFSGWQRQSELPSVQGAIEAALAKLEPRDHTIAAAGRTDTGVHGTGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +L+ ++IL + V +HARFSA R Y++R+++R+ Sbjct: 61 VAHCDMDKDWDPFRLSEALNHHLR-PAPVAILRAARVADDWHARFSAYERRYIFRLLSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 APL +E G+ W + +LD + MR A HL+G HDFTTFRS CQA SP++TID Sbjct: 120 APLTVENGQFWRVGHALDADLMRAGAAHLIGLHDFTTFRSSICQAKSPVKTIDEISITEI 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W + + L A+DR CGP+ PP Sbjct: 180 PRHDGTEFRFFLRARSFLHNQVRSIVGTLERVGAGAWPPEKVAEVLAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY VEY Sbjct: 240 QGLYLAGVEY 249 >gi|218548227|ref|YP_002382018.1| tRNA pseudouridine synthase A [Escherichia fergusonii ATCC 35469] gi|226708655|sp|B7LLF2|TRUA_ESCF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218355768|emb|CAQ88381.1| pseudouridylate synthase I [Escherichia fergusonii ATCC 35469] gi|324112855|gb|EGC06831.1| tRNA pseudouridine synthase A [Escherichia fergusonii B253] gi|325496642|gb|EGC94501.1| tRNA pseudouridine synthase A [Escherichia fergusonii ECD227] Length = 270 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|126208378|ref|YP_001053603.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae L20] gi|166228675|sp|A3N0R2|TRUA_ACTP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126097170|gb|ABN73998.1| tRNA pseudouridine synthase A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 262 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ S+Q +E+A+ +V + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQDEVESVQQKLEEALSIVANAPIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA L D I++ V + FHARFSA R Y Y I + Sbjct: 61 VHFETQAIRPLQSWCFGTNANL--PDDIAVKWAVEVSEDFHARFSATARRYRYIIFNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD + M +A Q L+G +DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILPKGVSHYHYALDHQKMHVAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLNVSRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ V SL VG G+ ++ L +DR P A EGLY Sbjct: 179 NYIVVDIQANAFVHHMVRNIVESLIEVGQGRQPVEWIQWLLAQRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVHY 243 >gi|110834324|ref|YP_693183.1| tRNA pseudouridine synthase A [Alcanivorax borkumensis SK2] gi|123149458|sp|Q0VPI7|TRUA_ALCBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110647435|emb|CAL16911.1| Pseudouridylate synthase [Alcanivorax borkumensis SK2] Length = 267 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQ Q+ ++Q +E A+ V V V AGRTD+GVH Sbjct: 1 MTRIALGIEYDGTDFRGWQMQQSGVRTVQECLEAALSKVANHSVTVVCAGRTDAGVHGTG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD N L ++I V FHARFSA+ R Y Y I Sbjct: 61 QVVHFDSDAPREMKSWIMGGNTNL--PRDVTIRWAVPVSDDFHARFSAVSRRYRYVIYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P AL + + + LD MR AA +LVG HDFT +RS+HCQA SP++T+ ++ Sbjct: 119 ARPPALYRSQVTWNHRPLDVAAMREAASYLVGHHDFTAYRSVHCQAKSPLKTLHSLELYE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A +FL +R+ G L VG GK + L+ +DR+ APP GL Sbjct: 179 QGKVLVLEAHANAFLMHMVRNIAGVLMKVGAGKKPPVWAKDVLECRDRRLGAATAPPFGL 238 Query: 240 YFDSVEY 246 Y +EY Sbjct: 239 YLVEIEY 245 >gi|222056725|ref|YP_002539087.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] gi|254789637|sp|B9M6W5|TRUA_GEOSF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221566014|gb|ACM21986.1| tRNA pseudouridine synthase A [Geobacter sp. FRC-32] Length = 244 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG +IQ IE+++ + G+ V + +GRTD+GVHAL Sbjct: 1 MRNIKLIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F ++ LN L I+I + S V F+ R AI + Y Y I + Sbjct: 61 VAVFKTQKDLPVRAFSDGLNCLL--PPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + L+ E M++ A H VG HDF FR+ +C A + IR + H V Sbjct: 119 RRSPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKV 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL +R G+L VG GK + + L DR G APP+GL Sbjct: 179 GDSVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMEVFY 244 >gi|319407940|emb|CBI81594.1| tRNA pseudouridine synthase A [Bartonella schoenbuchensis R1] Length = 247 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ + +EY+GS Y GWQRQ +IQG+IE+AIF +GE + + AGRTD+GVHA+ Q Sbjct: 1 MVRFKLTLEYDGSNYAGWQRQAGLRTIQGAIEQAIFNFSGEKLTIVTAGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L + + I++LN+ V FHARF A +R YL++I+ R Sbjct: 61 VAHVDFTKNWHANTVHNALNAHLQQQGENIAVLNVQNVPDSFHARFCATKRYYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNVKRVWWLPKHLNADAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 KGEEIFLYAQARSFLHHQIRSFAGSLVKVGTGQWTAQDLEAALNAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 241 YLMKIDY 247 >gi|149377425|ref|ZP_01895168.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] gi|149358266|gb|EDM46745.1| tRNA pseudouridine synthase A [Marinobacter algicola DG893] Length = 298 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK S+QG + +A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVAIAFEYDGRGFHGWQYQKSGVRSVQGELTQAVSKVADHPVELVCAGRTDAGVHASYQI 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ P +N L + + FHARFSA R Y Y I Sbjct: 78 AHFETPSVRNPRSWVMGINTSLPQDIAVHWAGNGVD--DFHARFSATYRRYRYVIYNHAV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G+ + LD M AAQ L G HDF++FR+ CQ+ SPIR ++ +V G Sbjct: 136 RPGILHGQVSWTFRPLDEALMHQAAQFLCGEHDFSSFRAAGCQSRSPIRFLEAIEVTRKG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG GK + + L+A+DR G APP GLY Sbjct: 196 DFVVIDVQANAFLHHMVRNIAGALMSVGTGKQRPEWIREILEARDRTVAGVTAPPHGLYL 255 Query: 242 DSVEY 246 V Y Sbjct: 256 VDVGY 260 >gi|254854197|ref|ZP_05243545.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300763651|ref|ZP_07073649.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] gi|258607589|gb|EEW20197.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503] gi|300515928|gb|EFK42977.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017] Length = 248 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL A IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKALQAM--TPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ +AL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|261820765|ref|YP_003258871.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] gi|261604778|gb|ACX87264.1| tRNA pseudouridine synthase A [Pectobacterium wasabiae WPP163] Length = 283 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQNDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKTVDEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSHGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLVAKDRTLAGATARAEGLYLV 261 Query: 243 SVEY 246 +V+Y Sbjct: 262 AVDY 265 >gi|295093665|emb|CBK82756.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 192 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 3 MKRVKLIVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHEDIKVIGASRTDSGVHALGN 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V FH R+ ++Y Y+I+ R+ Sbjct: 63 VAVFDTESGIPGEKFSFALNQRL--PEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 121 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFKSFCSSRSQVENTVRTITDITIDKA 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L+A+DR + GP A +GL Sbjct: 181 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILEAKDRTKAGPKAEAKGLT 240 Query: 241 FDSVEY 246 ++Y Sbjct: 241 LVEIKY 246 >gi|329577713|gb|EGG59139.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 249 Score = 192 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGAHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + IRTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKIRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|237748866|ref|ZP_04579346.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] gi|229380228|gb|EEO30319.1| tRNA pseudouridine synthase A [Oxalobacter formigenes OXCC13] Length = 261 Score = 192 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 132/247 (53%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ + GWQ Q +G ++Q +++AIF T + AGRTD+GVHA Q Sbjct: 1 MKRIALGIEYDGTNWRGWQTQPDGMTVQDQLQEAIFRFTRTRISTMCAGRTDAGVHASEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITR 119 V H D + +PV + +NAYL S + K FHAR SA+ R Y Y I Sbjct: 61 VVHLDTELDRLPVSWVRGVNAYLPSSIAVRWACEVPGGKDGFHARSSAMARRYRYLIYNS 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L K RA + K LD M+ A L+G HDF+ FR+ CQ+ +P++T+ D+ Sbjct: 121 PVRSPLWKNRAGWVFKPLDIGLMQKGAGLLLGEHDFSAFRAAECQSITPVKTVKRIDIEK 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNLI A +FLH +R+ VGSL +G G +++ L A+DR P P+GL Sbjct: 181 QGNLIVFTFEANAFLHHMVRNIVGSLVYIGKGNHPPEWMKQLLDAKDRSLAAPTFMPDGL 240 Query: 240 YFDSVEY 246 Y V Y Sbjct: 241 YLSRVHY 247 >gi|262043366|ref|ZP_06016493.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039278|gb|EEW40422.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 270 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKRVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 SV+Y Sbjct: 249 SVDY 252 >gi|227550751|ref|ZP_03980800.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257887991|ref|ZP_05667644.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257893205|ref|ZP_05672858.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896390|ref|ZP_05676043.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379476|ref|ZP_06625620.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|293570714|ref|ZP_06681764.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|227180069|gb|EEI61041.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257824045|gb|EEV50977.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257829584|gb|EEV56191.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257832955|gb|EEV59376.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|291609186|gb|EFF38458.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|292641999|gb|EFF60165.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 248 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E ++ A L+G HDFT+F + +RTI + Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|295398321|ref|ZP_06808363.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] gi|294973460|gb|EFG49245.1| tRNA pseudouridine synthase A [Aerococcus viridans ATCC 11563] Length = 285 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ + ++Y+G+ + G+Q Q NG ++Q ++EKA+ L++ G + V G+GRTDSGVHAL Sbjct: 1 MPRFKVTLQYDGTPFVGFQVQPNGHTVQEALEKALKLMSKGHDIQVVGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + +A+N+ L D I I + V+ FHARF + Y+Y++ T Sbjct: 61 QVIHFDYPAEIGEEAVLRAMNSIL--DDAIRITKVERVEDDFHARFHTNGKKYIYKVDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 + P + + P D M+ A + ++G HDF +F S ++ +R I +V Sbjct: 119 KFPSPFTRQYMYHHPYRTDVTRMQTALKDIIGVHDFKSFCSTKTDKTNFVREIYRAEVTA 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ +R VG+ +GDG ++++ + A+DR E GP A Sbjct: 179 DPDAETLTFVFEGSGFLYNMVRILVGTTLQIGDGLRPVDEMKRLITAEDRNEAGPTAAAH 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLAEVYY 247 >gi|323977481|gb|EGB72567.1| tRNA pseudouridine synthase A [Escherichia coli TW10509] Length = 270 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|297545296|ref|YP_003677598.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843071|gb|ADH61587.1| tRNA pseudouridine synthase A [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 240 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 2 IVVQYDGTNYHGWQYQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANFK 61 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 62 TNTKIPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYLILNRKFRMPT 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 120 MRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFIN 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 180 IEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYNILASKDRTKAGITAPPQGLYLIKII 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|91777254|ref|YP_552462.1| tRNA pseudouridine synthase A [Burkholderia xenovorans LB400] gi|123167830|sp|Q13S27|TRUA_BURXL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91689914|gb|ABE33112.1| tRNA pseudouridine synthase [Burkholderia xenovorans LB400] Length = 270 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSVFCGWQSQPHGNTVQDELERALREFAQTPVQTIVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + +LD + M+ AA HL+G HDF+ FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAARAGWVHAALDVDAMQAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDVRQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L +G G+ + + L ++DR+ P P+GLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVYIGRGRRPVEWMAEVLASRDREFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|206580474|ref|YP_002237289.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288934225|ref|YP_003438284.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|290508428|ref|ZP_06547799.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] gi|238057733|sp|B5XNR9|TRUA_KLEP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206569532|gb|ACI11308.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae 342] gi|288888954|gb|ADC57272.1| tRNA pseudouridine synthase A [Klebsiella variicola At-22] gi|289777822|gb|EFD85819.1| tRNA pseudouridine synthase A [Klebsiella sp. 1_1_55] Length = 270 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 FKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 70 VHFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 128 RPAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|298293826|ref|YP_003695765.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] gi|296930337|gb|ADH91146.1| tRNA pseudouridine synthase A [Starkeya novella DSM 506] Length = 250 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 126/251 (50%), Positives = 166/251 (66%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q G+S+QG++ +A+ +TGE V VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFVGWQIQAEGTSVQGALAQAVTRLTGEQVAVHGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH +L R+W P + ALNA+L+ I++L+ FHARFSA R Y+YRII R+ Sbjct: 61 VAHVELSRDWRPDTVRDALNAHLR-PHPIAVLSAERAADDFHARFSATGRRYVYRIIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 LALE+ RAW + + LD M A LVGRHDFTTFR++ CQA+SP++T+D +V Sbjct: 120 PDLALERNRAWRVLRPLDVAGMAEGAARLVGRHDFTTFRAVGCQAASPLKTLDRLEVEEV 179 Query: 180 ----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G I + ARSFLH Q+RS VG+L VG+G WT D+ AL+A+DR CGP+AP Sbjct: 180 ALEGPGMEIRVHAAARSFLHHQVRSMVGTLVKVGEGAWTPDDVTAALEAKDRTRCGPMAP 239 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 240 SAGLYLAEVTY 250 >gi|154250719|ref|YP_001411543.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] gi|171769555|sp|A7HPQ3|TRUA_PARL1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154154669|gb|ABS61886.1| tRNA pseudouridine synthase A [Parvibaculum lavamentivorans DS-1] Length = 246 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 129/246 (52%), Positives = 170/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GS + GWQ Q NG S+Q +E+ I G+ + + GAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D P L A+NA+ ++I+ V F ARFSA++R Y+YRI+ R+ Sbjct: 61 VAHVDFETPVAPDTLRDAVNAH-MRPHPVAIVEAEEVPDSFEARFSAVKRHYMYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L++G+AWL+ K+LD + M AAQ LVG HDFTTFRS+ CQA SP++T+D V+ + Sbjct: 120 APLTLDRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQAKSPVKTVDEISVSRY 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IEI ARSFLH Q+RSFVG+LK+VGDG WT +EKAL A+DR CGP+APP+GLY Sbjct: 180 ADEIEIVCRARSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LLQVDY 245 >gi|220928242|ref|YP_002505151.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] gi|254789632|sp|B8I814|TRUA_CLOCE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219998570|gb|ACL75171.1| tRNA pseudouridine synthase A [Clostridium cellulolyticum H10] Length = 245 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G+ Y GWQ QKN ++Q I+KA+ + GE V V G RTD GVHA Q Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + A+N L D I I N V ++FHAR+SA + Y Y I Sbjct: 61 VAHFLTDSKIPGDKFSYAINNLL--PDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + R+ + L+ M+ AA + G HDF F++ Q S +R I +V Sbjct: 119 HASAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVK 178 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + V FL+ +R G+L VG GK +++ + DR + G AP +GL Sbjct: 179 EDNMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGL 238 Query: 240 YFDSVEY 246 Y + Y Sbjct: 239 YLVQIYY 245 >gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK] Length = 261 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATPVSDDFHARFSATARRYRYIIYNNAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGIGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|163816009|ref|ZP_02207379.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] gi|158448819|gb|EDP25814.1| hypothetical protein COPEUT_02189 [Coprococcus eutactus ATCC 27759] Length = 254 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +++ + K + + E + V GA RTDSGVHAL Sbjct: 10 MKRVKLVVAYDGTNYCGWQVQINGITVEEVLNKTLSELCHENIKVIGASRTDSGVHALGN 69 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L + I I V FH R+ ++Y Y+I+ R+ Sbjct: 70 VAVFDTESGIPGEKFSFALNQRL--PEDIRIQESCQVADDFHPRYCDTIKTYEYKILNRR 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + E+ + + LD + M+ AA LVG HDF +F S Q + +RTI ++ Sbjct: 128 FDMPTERLYSTFVYYPLDIDKMKRAAAVLVGEHDFNSFCSTRSQVENTVRTITDITIDKV 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++I IR+ FL+ +R VG+L +G G W +E L A+DR + GP A +GL Sbjct: 188 GDMIHIRISGNGFLYNMVRIIVGTLMKIGLGIWPEDCMESILAAKDRTKAGPKAEAKGLT 247 Query: 241 FDSVEY 246 ++Y Sbjct: 248 LVEIKY 253 >gi|325678788|ref|ZP_08158386.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] gi|324109292|gb|EGC03510.1| tRNA pseudouridine synthase A [Ruminococcus albus 8] Length = 250 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+GSGY GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA Sbjct: 1 MRNFKVTLAYDGSGYHGWQRQSNALAVQEVVENAIFKLTGEKVVVQGCSRTDAGVHARMY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +L P + LN++L D IS++ + FHAR+ + Y Y + + Sbjct: 61 VLSMELESTITPRGIQLGLNSWL--PDDISVIGCEECEAGFHARYHCKGKEYEYIVHNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K A+ +D + AA+ VG HDF F S C +RTI FDV Sbjct: 119 IKDPFLKNTAFRNTYPIDEVLLDKAAKDYVGEHDFKAFCSTACDKEITVRTIYRFDVRRE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ V FL+ +R VG+L + +GK + + + ++++DR + G PP+GLY Sbjct: 179 GELVIFTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRIIESKDRTKAGKTVPPQGLY 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LNKVYY 244 >gi|239948364|ref|ZP_04700117.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] gi|239922640|gb|EER22664.1| tRNA pseudouridine synthase A [Rickettsia endosymbiont of Ixodes scapularis] Length = 245 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ ++GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQKQAGVMSVQQILEEAIYKLSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIIAAINYF-ARPYAVGVWNCELAPNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDILAMQKAASYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKAEY 245 >gi|312904650|ref|ZP_07763805.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|310632002|gb|EFQ15285.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] Length = 249 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLVRMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ T + + A+DR GP A PE Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLVGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLAEVKY 247 >gi|259417872|ref|ZP_05741791.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] gi|259346778|gb|EEW58592.1| tRNA pseudouridine synthase A [Silicibacter sp. TrichCH4B] Length = 278 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 20 MPRIALKVEYHGKPFAGWQRQKDQPSVQGAIEAALAKLEPGEHTIAAAGRTDTGVHGLGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK D I+I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 80 VAHCDLQKDWDPFRLSEALNYHLK-PDPIAIVDAARVDDDWHARFSAIERQYLFRILMRR 138 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD E M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 139 APATHDAGQVWQINHRLDVEAMQAGADMLLGNHDFTTFRSSICQAASPVKTLDELRVEQV 198 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 199 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALAAKDRAACGPVCPG 258 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 259 HGLYLARVGY 268 >gi|237808326|ref|YP_002892766.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] gi|259550489|sp|C4LF13|TRUA_TOLAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|237500587|gb|ACQ93180.1| tRNA pseudouridine synthase A [Tolumonas auensis DSM 9187] Length = 261 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ Y+GWQRQ+ +S+Q +E A+ V V + AGRTD+GV+A QV Sbjct: 1 MRIALGIEYFGADYYGWQRQREVNSVQQELETALSRVANHPVEIQCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L D I++ +VD FHARFSA R Y Y I Sbjct: 61 IHFDTTANRQMSAWTLGINAQL--PDDIAVRWAHVVDDNFHARFSATARRYRYIIYNEPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + L+ + M A Q L+G DFT+FR+ CQ+++P R I V+ G Sbjct: 119 RPGILAKGVSHYYHPLNADQMNEAGQLLLGERDFTSFRAAQCQSNTPFRNIMSLSVHRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ +GSL LVG G+ + + L A+DR G A EGLY Sbjct: 179 SYVILDIQANAFLHHMVRNIMGSLLLVGTGEKPKEWIGEILDAKDRTVSGATAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|209518943|ref|ZP_03267753.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] gi|209500595|gb|EEA00641.1| tRNA pseudouridine synthase A [Burkholderia sp. H160] Length = 270 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MTRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFL--PKTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR+AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRLAAEHLIGEHDFSAFRSSQCQSKTPFKHLYQIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|163787684|ref|ZP_02182131.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159877572|gb|EDP71629.1| putative tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 252 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q N S+Q +EKA+ + V V GAGRTD+GVHA + Sbjct: 1 MRFFIELSYNGKEYHGWQNQPNAISVQEVLEKALSTILKAEVSVMGAGRTDAGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E+ + LN+YL I++ + V HARF A R+Y Y+I T + Sbjct: 61 AHFDFEKEFEYKDVVYKLNSYL--PKDIAVSTIFEVKPDAHARFEAKSRTYHYKIST--S 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + A+ + LD E M A + L DF F + + I Sbjct: 117 KNVFDYDFAYQVQLPLDVEAMNTACKILFEYKDFQCFSKSNTDVKTYNCDIKEAFWTQNS 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG++ +G GK DL K + +++R E G P GLY Sbjct: 177 NQLIFTITADRFLRNMVRAIVGTMVNIGLGKLKPEDLHKIIASKNRSEAGFSVPAHGLYL 236 Query: 242 DSVEY 246 + Y Sbjct: 237 AKIVY 241 >gi|156933088|ref|YP_001437004.1| tRNA pseudouridine synthase A [Cronobacter sakazakii ATCC BAA-894] gi|166228697|sp|A7MH65|TRUA_ENTS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156531342|gb|ABU76168.1| hypothetical protein ESA_00898 [Cronobacter sakazakii ATCC BAA-894] Length = 270 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 10 VKIALGIEYDGSKYYGWQRQQEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHATGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V +FHARFSA R Y Y I + Sbjct: 70 VHFETTAIRKDAAWTLGVNANL--PGDIAVRWVKDVPAEFHARFSATARRYRYVIYNHRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V FG Sbjct: 128 RPAVLSQGVTHYHLPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNLMHINVERFG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G + + + L A+DR A EGLY Sbjct: 188 AYIVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 SV+Y Sbjct: 248 VSVDY 252 >gi|154247231|ref|YP_001418189.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] gi|238686729|sp|A7IKI9|TRUA_XANP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154161316|gb|ABS68532.1| tRNA pseudouridine synthase A [Xanthobacter autotrophicus Py2] Length = 245 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 125/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ Y GWQ Q + ++QG++ +A GE V V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W + A+ A L+ I++L+ V F ARFSA +R YLYRII R+ Sbjct: 61 VAHVDLSRHWRSDTVRDAMTAQLR-PHPIAVLSAEEVPDSFDARFSATKRHYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW IP+ LD + M AAQ L+G+HDF+TFR+ CQA+SP++T+D DV+ Sbjct: 120 PDLALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQAASPLKTLDQLDVSRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VGSL VG+G+W++ DLE AL+A DR CGP+AP GLY Sbjct: 180 GDEIRVITSARSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLY 239 Query: 241 FDSVEY 246 +V Y Sbjct: 240 LAAVSY 245 >gi|194017442|ref|ZP_03056053.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] gi|194010714|gb|EDW20285.1| tRNA pseudouridine synthase A [Bacillus pumilus ATCC 7061] Length = 247 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 ++ + Y+G+ + G+Q Q ++Q IE A+ + + + + +GRTDSGVHA Sbjct: 1 MKVKCTVSYDGTHFKGYQVQPGQRTVQTEIESALARMHKQDELIPIVASGRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I +L VD+ FHARFS + + Y Y++ T Sbjct: 61 QVIHFDTPLSIPMERWPFALNSLL--PDDIRVLKAEEVDESFHARFSVVSKEYRYKVSTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P LD + MR AA HL+G HDFT+F + + + +R I + + Sbjct: 119 THQNVFTRQYACHFPYRLDADKMREAAGHLIGTHDFTSFCAANTEVQDKVREIYTLEWKN 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+RV FL+ +R G+L +G GK+ +++ L A++R+ G AP GL Sbjct: 179 VSDGLEMRVRGNGFLYNMVRIIAGTLLEIGSGKFHPEEIKAMLAARNREAAGKTAPSHGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWEVFY 245 >gi|302384321|ref|YP_003820144.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] gi|302194949|gb|ADL02521.1| tRNA pseudouridine synthase A [Brevundimonas subvibrioides ATCC 15264] Length = 247 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y G+Q Q ++QG +E A+ G+ V + AGRTDSGVHA Q Sbjct: 1 MPRYRLTLEYDGRPYAGFQAQDGLPTVQGVVETAVTAFCGQTVRIAAAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W + ALNA++ + ++ D +HARFSA R YLYRI+ R Sbjct: 61 VAHVDLDKAWPASTVMNALNAHMVREGVAVLACEAVPD-DWHARFSATGRRYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ALE+G+ W + + LD M+ A HL+G HDFTTFR + CQ+ SP +T+D V++ Sbjct: 120 GRPALERGKVWHVRRPLDVAAMQAGADHLIGHHDFTTFRDLACQSKSPEKTLDVARVSAV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS G+L VG G+W+ D++ AL+A+DR CGP++P +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMTGTLVEVGLGRWSPDDVKTALEARDRTACGPVSPSDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVAY 245 >gi|114706822|ref|ZP_01439722.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] gi|114537770|gb|EAU40894.1| tRNA pseudouridine synthase A [Fulvimarina pelagi HTCC2506] Length = 261 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 127/248 (51%), Positives = 167/248 (67%), Gaps = 2/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ + S+Q IE+A + G V+ GAGRTDSGVHA Q Sbjct: 1 MPRYKLTVEYDGTPYAGWQRQADEPSVQAVIEEAAHRLCGTNPVLFGAGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + + ALNA+ + + IL+ V F ARFSA +R Y YRI R+ Sbjct: 61 VAHIDLPKAYAGGTVRDALNAH-MRDEPVVILSAEEVGADFDARFSARKRWYRYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP A+ +G+ W + K LD E M AAQ L G HDFTTFRS HCQA +PIRT++ +V Sbjct: 120 APAAILRGKVWWVSKLLDTEAMHEAAQVLAGTHDFTTFRSTHCQAKNPIRTLEKLEVVRA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF G+LKLVG+G+WT+TD+ +AL+A+DR CGP+APP GL Sbjct: 180 NGEEIHIVAMAQSFLHNQIRSFAGTLKLVGEGRWTATDVSEALKAKDRTACGPVAPPYGL 239 Query: 240 YFDSVEYS 247 Y ++EY+ Sbjct: 240 YLTAIEYT 247 >gi|168181898|ref|ZP_02616562.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237796908|ref|YP_002864460.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182674803|gb|EDT86764.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229262719|gb|ACQ53752.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EKAI +T E + V G RTDSGVHA Sbjct: 1 MKNIKLKLEYDGANYCGWQKQKNEKFITLQGTLEKAISNITKEKIEVIGVSRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + P L K +N L I +L+ +FH+RF + ++Y Y ++ Sbjct: 61 GYVCNFFTNTKIPPENLQKVINNNL--PADIVVLSSEEASNEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM++A+++ +G HDF+ F++ + +RTI F++N Sbjct: 119 SSQPIAIGRNYIFQFKDKLNIDNMKMASRYFIGTHDFSAFKTKGSSIKTSVRTISKFEIN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG+L +G K ++ ++++DR + G P G Sbjct: 179 KKGDFIKFIITGDGFLYNMVRIIVGTLIEIGLNKREPEYIKYVIKSKDRTKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|323143617|ref|ZP_08078294.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] gi|322416680|gb|EFY07337.1| tRNA pseudouridine synthase A [Succinatimonas hippei YIT 12066] Length = 261 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY G Y G+QRQ N ++QG +EKA+ ++ E V + AGRTD+GV+A QV Sbjct: 1 MRVALGVEYEGWNYAGFQRQPNAVTVQGELEKALSIIADEPVSLVCAGRTDAGVNATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ ++ L N L I+I IV + FHARFSA R Y Y I Sbjct: 61 IHIDITKDRSEKALLLGTNTKL--PSDIAITWAKIVSEDFHARFSARARRYRYIIQNTMH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + D E M+ AA+ L+G HDF +F+ Q+SS R + + +++ G Sbjct: 119 RPGVLNKGVSVYHGDYDIELMQKAAKILIGEHDFASFKGADEQSSSTFRCVHYIEISRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + A +FL+ +R+ VGSL LVG ++ E+A +A++R GP A P+GLY Sbjct: 179 PFIVFDIAANAFLNHMVRNIVGSLLLVGSKVKSTAWFEEAFKARNRDAAGPTAHPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|260588018|ref|ZP_05853931.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|331082412|ref|ZP_08331538.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] gi|260541545|gb|EEX22114.1| tRNA pseudouridine synthase A [Blautia hansenii DSM 20583] gi|330400898|gb|EGG80499.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 6_1_63FAA] Length = 244 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + I+Y+GS Y GWQRQK+ ++IQG IE + + G V + GAGRTD+GVHA Q Sbjct: 1 MNYRLDIQYDGSRYGGWQRQKDTDNTIQGKIEDVLTKMLGTEVQIQGAGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F E +C+ LN YL + I I +S +++FH+R +A + Y YRI++ Sbjct: 61 VANFHADCEKSCEEICQYLNEYL--PEDIEISKVSEAEERFHSRLNAKEKVYQYRIVSGI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + ++LD M+ AA++L G HDF +F S S +RTI ++ Sbjct: 119 HKNVFERKYQCPLHETLDVNAMQEAAKYLEGTHDFKSFCSNKKMKKSSVRTIYSIEIVDL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I FL+ +R G+L VG G+ +++ L+ DRKE G AP GL Sbjct: 179 TQEIVITYTGNGFLYNMVRILTGTLIEVGRGRRKPEEMKGILEGCDRKEAGFTAPARGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVRY 244 >gi|67459748|ref|YP_247372.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] gi|75535862|sp|Q4UJT2|TRUA_RICFE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67005281|gb|AAY62207.1| tRNA pseudouridine synthase A [Rickettsia felis URRWXCal2] Length = 245 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 151/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVISVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKHLEPHKIITAINYF-ARPYAVGVWNCELASNNFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLTMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|109897925|ref|YP_661180.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] gi|123064742|sp|Q15VG2|TRUA_PSEA6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109700206|gb|ABG40126.1| tRNA pseudouridine synthase A [Pseudoalteromonas atlantica T6c] Length = 263 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQRQ S+Q +E+A+ + E + V AGRTD+GVHA QV Sbjct: 1 MRIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N YL DTIS+ + V + FHARFSA R Y Y I Sbjct: 61 VHFETTSQRPDRAWTLGINTYL--PDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + I LD E M AAQ LVG+HDF++FR+++CQA + RT+ H V G Sbjct: 119 RSGILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V A +FLH +R+ G+L +G + +++ L+ +DR + G A P GLY Sbjct: 179 DYIVIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VHVTY 243 >gi|323967759|gb|EGB63171.1| tRNA pseudouridine synthase A [Escherichia coli M863] gi|327252589|gb|EGE64248.1| tRNA pseudouridine synthase A [Escherichia coli STEC_7v] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|261493083|ref|ZP_05989622.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311262|gb|EEY12426.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 279 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 137 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G GK + L+ +DR++ P A EGLY Sbjct: 197 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQPVEWAKWVLEQRDREKAAPTAKAEGLYL 256 Query: 242 DSVEY 246 V Y Sbjct: 257 VEVHY 261 >gi|227543592|ref|ZP_03973641.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300909379|ref|ZP_07126840.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] gi|227186432|gb|EEI66503.1| tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] gi|300893244|gb|EFK86603.1| tRNA-pseudouridine synthase I [Lactobacillus reuteri SD2112] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q N +++ +++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDNDFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI+ + Sbjct: 119 QGEFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFVASGSQAKSNVRTIESITI 178 Query: 178 NSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ Q+R V L +G + D+ + L+A+DR AP Sbjct: 179 KRDELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRTLARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|240849747|ref|YP_002971135.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] gi|240266870|gb|ACS50458.1| tRNA pseudouridine synthase A [Bartonella grahamii as4aup] Length = 247 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 132/247 (53%), Positives = 169/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAKLHTVQGALEQAIFSFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L+ + ISILN+ V F ARFSA++R Y+++I+ R Sbjct: 61 VAHVDFIKNWHPHTVRDALNALLRKQGEAISILNVQNVPDDFDARFSAVKRHYIFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W +PK L+ E M AAQ LVG HDFTTFRS HCQA SPIRT+D D+ Sbjct: 121 RSPPALNAKRVWWLPKPLNAEAMHEAAQKLVGEHDFTTFRSAHCQAKSPIRTLDRLDIQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKHCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|295700767|ref|YP_003608660.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] gi|295439980|gb|ADG19149.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ T V AGRTD GVH L Q Sbjct: 1 MKRIALGVQYDGAAFAGWQSQPHGNTVQDELERALREFTRTPVQTVVAGRTDRGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + + NA+L TI + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRVDISWVRGPNAFL--PKTIGVQWAKPMPDDFHARFSAFERTYYYVLYVSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD + MR AA+HL+G HDF+ FRS CQ+ +P + + DV Sbjct: 119 VRSPMLTTRAGWVHTPLDVDAMRSAAEHLIGEHDFSAFRSSQCQSKTPFKHLYRIDVKRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + R A +FLH +R+ +G L +G G+ + + L ++ R P P+GLY Sbjct: 179 GNFVHFRFRANAFLHHMVRNVMGCLIEIGSGRRPAAWMADVLASRSRDCAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|310659467|ref|YP_003937188.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308826245|emb|CBH22283.1| tRNA pseudouridine synthase A 1 (tRNA-uridine isomerase I 1) (tRNA pseudouridylate synthase I 1) [Clostridium sticklandii] Length = 249 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++IEY+G+ Y GWQRQ N +S+Q IEKAI+ VT + ++G+GRTD+ VHAL Q Sbjct: 1 MRNILILIEYDGTNYNGWQRQPNAASVQEEIEKAIYKVTKKQTDIYGSGRTDAKVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ALN L D I ILN V ++FH+R+SA ++Y YR++ Sbjct: 61 VANFHTDSAIPTEKFAVALNTNL--PDDIVILNSIEVPEEFHSRYSAKVKTYRYRVLNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +E+ A+ + + LD + ++ A+ L+G HDF F S + IRTI + Sbjct: 119 VRRPIERNYAYHVREDLDLDIIKTMAKLLIGEHDFKAFSSSGSSVKTTIRTIYDIKITKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++IE FL+ +R VG+L +G K T D+++AL DR GP APP+GL+ Sbjct: 179 NDIIEFEFTGNGFLYNMVRIIVGTLIELGK-KSTRYDIQRALMTGDRGFAGPTAPPQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LKKVSYN 244 >gi|261496287|ref|ZP_05992691.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308049|gb|EEY09348.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 279 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 19 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 79 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 137 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G GK + + L+ +DR++ P A EGLY Sbjct: 197 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGKQSVEWAKWVLEQRDREKAAPTAKAEGLYL 256 Query: 242 DSVEY 246 V Y Sbjct: 257 VEVHY 261 >gi|254362514|ref|ZP_04978619.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] gi|153094111|gb|EDN75015.1| tRNA-pseudouridine synthase I [Mannheimia haemolytica PHL213] Length = 261 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS YFGWQRQ+ S+Q +E+A+ +V V V AGRTD+GVH QV Sbjct: 1 MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEVFCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ C NA+L D I++ V++ FHARFSA R Y Y I ++ Sbjct: 61 VHFETQANRPLQSWCFGTNAHL--PDDIAVKWAVAVNEDFHARFSATARRYRYIIFNQKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q+L+G +DF++FR+ CQ+++P R I H +V+ G Sbjct: 119 RSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKCQSNTPWRNIHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VG+L +G G+ + L+ +DR++ P A EGLY Sbjct: 179 NYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWVLEQRDREKAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VEVHY 243 >gi|308050321|ref|YP_003913887.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] gi|307632511|gb|ADN76813.1| tRNA pseudouridine synthase A [Ferrimonas balearica DSM 9799] Length = 263 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G GYFGWQRQ+ +Q +E AI V V V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGHGYFGWQRQREVVGVQERLEAAIAKVANHPVEVACAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P LNA L D I++ V FHARFSA R Y Y I + Sbjct: 61 VHFDAQFDRRPAAWTLGLNANL--PDGIAVRWAQPVSDDFHARFSATARRYRYIIFNNRL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M A Q L+G +DF+ FR+I CQ+ +P R I H V G Sbjct: 119 RPGILRHGVSHYHHPLDEALMHQAGQQLLGENDFSAFRAIQCQSRTPWRNIHHLRVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G + + L+ +DR A EGLY Sbjct: 179 QYVIIDIKANAFVHHMVRNIAGSLMEVGMGNRPVEWIAELLEGKDRNLAAATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|82544799|ref|YP_408746.1| tRNA pseudouridine synthase A [Shigella boydii Sb227] gi|123728357|sp|Q31YE0|TRUA_SHIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81246210|gb|ABB66918.1| pseudouridylate synthase I [Shigella boydii Sb227] gi|332093646|gb|EGI98704.1| tRNA pseudouridine synthase A [Shigella boydii 3594-74] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L D I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAPRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|225026395|ref|ZP_03715587.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] gi|224956284|gb|EEG37493.1| hypothetical protein EUBHAL_00644 [Eubacterium hallii DSM 3353] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 10/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y GWQ Q NG +++ + K + E + + GA RTDSGVH+ Sbjct: 4 MKRFKLVVAYDGTNYCGWQIQPNGITVEEVLNKTLSRFLKEEIHIIGASRTDSGVHSFGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD P LC ALN L + I I++ V FH R+ R++Y Y I + Sbjct: 64 VAVFDSETTIPPEKLCFALNPQL--PEDIRIVSSEQVPGDFHPRYCDTRKTYEYHIQNGK 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT--------I 172 PL E+ + L+ L+ + M+ A+Q+LVG HDF +F + QA + +RT Sbjct: 122 IPLPTERLYSHLVIFPLNIQAMQEASQYLVGTHDFKSFCAAKTQAQTTVRTVTGIEVEAH 181 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + IRV FL+ +R G+L VG G + +++ L+A DR + G Sbjct: 182 PLSEGEYPSKKVIIRVTGEGFLYNMVRIISGTLIKVGLGVYPPEHVKQILEACDRSQAGE 241 Query: 233 LAPPEGLYFDSVEY 246 P +GL+ +EY Sbjct: 242 TVPAKGLFLKKIEY 255 >gi|254454857|ref|ZP_05068294.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] gi|198269263|gb|EDY93533.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 238] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 155/251 (61%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPREHKIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK ISI+ + V +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKAWDAFRLSEALNFHLK-PAPISIVACAQVSDDWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT-----IDHF 175 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT + Sbjct: 120 APLVLEVGKVWQVGQKLDGALMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLKVQQV 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 TRVDGAQEFQFHVRARSFLHNQVRSFVGTLERVGAGAWTPDDVTAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEY 246 P GLY V Y Sbjct: 240 PHGLYLAGVSY 250 >gi|152971246|ref|YP_001336355.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|166228703|sp|A6TC04|TRUA_KLEP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150956095|gb|ABR78125.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSQGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 SV+Y Sbjct: 249 SVDY 252 >gi|258646098|ref|ZP_05733567.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403476|gb|EEW97023.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 265 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y G+QRQ+N ++Q +E A+ +TG ++ A RTD+GVHA Q Sbjct: 1 MRNIRITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F ALN L I + V F R + ++Y Y + + Sbjct: 61 ECTFYTESSIPGDRFIFALNILL--PPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K W + LD M AA+ L G HDFT+FR + +SP+RTI + Sbjct: 119 DCPPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V FL+ +R+ G+L G GK T DL + L+A+DRK G AP GL Sbjct: 179 HHFFHIFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLC 238 Query: 241 FDSVEYS 247 V ++ Sbjct: 239 LLKVYFT 245 >gi|238895838|ref|YP_002920574.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae NTUH-K2044] gi|329997357|ref|ZP_08302740.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] gi|238548156|dbj|BAH64507.1| tRNA pseudouridine synthase A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328539106|gb|EGF65142.1| tRNA pseudouridine synthase A [Klebsiella sp. MS 92-3] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETRAQRKDAAWTLGVNANL--PGDIAVRWVKHVPADFHARFSATARRYRYVIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M+ AAQ L+G +DFT+FR++ CQ+ +P R + H +V +G Sbjct: 129 PAVLSHGVTHFHQPLDAERMQRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 SV+Y Sbjct: 249 SVDY 252 >gi|259502563|ref|ZP_05745465.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] gi|259169515|gb|EEW54010.1| tRNA pseudouridine synthase A [Lactobacillus antri DSM 16041] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 133/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + V V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKHPDPPVSVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + + KALN+ L I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYQLSDEAMRKALNSLL--PLDILVKKAERVDENFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ +D E MR+AA+ +G HDFT+F + QA S +RT++ V Sbjct: 119 QGDFVDPFKRNYTAHYKVPVDIEKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKITV 178 Query: 178 NSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N E FL+ QIR V L VG G+ +D+++ L A+DR + AP Sbjct: 179 NRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|238024257|ref|YP_002908489.1| tRNA pseudouridine synthase A [Burkholderia glumae BGR1] gi|237878922|gb|ACR31254.1| Pseudouridylate synthase [Burkholderia glumae BGR1] Length = 276 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFHGWQSQPHGNTVQDTLERALKAFARVPLQTVVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L S + + + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRTAFSWVRGTNAFLPPSVAVQW--AKPMPEAFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLAARAGWVHTPLDVEAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRPSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L++ L A++R P P+GLY Sbjct: 179 SFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWLDEVLAARNRDRAAPTFAPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|152979369|ref|YP_001344998.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] gi|171704324|sp|A6VQ16|TRUA_ACTSZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|150841092|gb|ABR75063.1| tRNA pseudouridine synthase A [Actinobacillus succinogenes 130Z] Length = 264 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EYNG YFGWQRQ+ S+Q +EKA+ V E + + AGRTDSGVH QV Sbjct: 1 MKIALGVEYNGKRYFGWQRQEKVLSVQEELEKALSFVANEKIDLFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ D +FHARFSA R Y Y I T Sbjct: 61 VHFETEVVRPERAWAFGTNANL--PDDIAVKWAKTADDEFHARFSATARRYRYLIYTNPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M A Q L+G +DF++FR+ CQ+ +P R + H V G Sbjct: 119 RSAVLPEGVTHCHLPLDHEKMHEAGQFLLGENDFSSFRAAQCQSKTPWRNVHHLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G+ ++ L+ ++RK P A P+GLY Sbjct: 179 RYIVVDIQANAFVHHMVRNIVGSLMEVGSGRQPVEWMKWLLEQRNRKLAAPTAKPQGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VRVTY 243 >gi|16804636|ref|NP_466121.1| tRNA pseudouridine synthase A [Listeria monocytogenes EGD-e] gi|224499270|ref|ZP_03667619.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1988] gi|224503609|ref|ZP_03671916.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561] gi|254829047|ref|ZP_05233734.1| truA [Listeria monocytogenes FSL N3-165] gi|254830971|ref|ZP_05235626.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S] gi|254899951|ref|ZP_05259875.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161] gi|254912843|ref|ZP_05262855.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] gi|254937223|ref|ZP_05268920.1| truA [Listeria monocytogenes F6900] gi|255029029|ref|ZP_05300980.1| tRNA pseudouridine synthase A [Listeria monocytogenes LO28] gi|284800516|ref|YP_003412381.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284993702|ref|YP_003415470.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|24212550|sp|Q8Y457|TRUA_LISMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16412086|emb|CAD00676.1| truA [Listeria monocytogenes EGD-e] gi|258601456|gb|EEW14781.1| truA [Listeria monocytogenes FSL N3-165] gi|258609828|gb|EEW22436.1| truA [Listeria monocytogenes F6900] gi|284056078|gb|ADB67019.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578] gi|284059169|gb|ADB70108.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923] gi|293590841|gb|EFF99175.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818] Length = 248 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ +AL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|290891783|ref|ZP_06554780.1| truA protein [Listeria monocytogenes FSL J2-071] gi|290558377|gb|EFD91894.1| truA protein [Listeria monocytogenes FSL J2-071] Length = 248 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMNKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|283832251|ref|ZP_06351992.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] gi|291071892|gb|EFE10001.1| tRNA pseudouridine synthase A [Citrobacter youngae ATCC 29220] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 10 HKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVSVFCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 70 VHFETHAVRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V FG Sbjct: 128 RPAVLGKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVERFG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 +V+Y Sbjct: 248 VAVDY 252 >gi|46908770|ref|YP_015159.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47093538|ref|ZP_00231299.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|226225144|ref|YP_002759251.1| pseudouridylate synthase I [Listeria monocytogenes Clip81459] gi|254825041|ref|ZP_05230042.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|254992719|ref|ZP_05274909.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-064] gi|255520577|ref|ZP_05387814.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-175] gi|51316671|sp|Q71WI0|TRUA_LISMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550404|sp|C1KZ13|TRUA_LISMC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46882043|gb|AAT05336.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b str. F2365] gi|47018098|gb|EAL08870.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b H7858] gi|225877606|emb|CAS06320.1| Putative pseudouridylate synthase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594283|gb|EFG02044.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194] gi|328468084|gb|EGF39090.1| tRNA pseudouridine synthase A [Listeria monocytogenes 1816] Length = 248 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ +AL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|319939850|ref|ZP_08014205.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] gi|319810861|gb|EFW07180.1| tRNA pseudouridine synthase A [Streptococcus anginosus 1_2_62CV] Length = 249 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ V+VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTKINRGKPVIVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ + Y + + Sbjct: 61 QVIHFDLPQKRDEEKLRFALDT--QTPEDIDFISVEEVNEDFHSRYWKHSKIYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD ++ A L G HDFT F + + +RTI D Sbjct: 119 RPKNPMMRHYATHFPYPLDISLIKNAIAKLEGTHDFTGFTASGTSVENKVRTITEARLDF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+G+ +++ L ++R GP A P Sbjct: 179 DEKRNFLIFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKNRHLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|163867374|ref|YP_001608568.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] gi|189029992|sp|A9ILJ7|TRUA_BART1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161017015|emb|CAK00573.1| tRNA pseudouridine synthase A [Bartonella tribocorum CIP 105476] Length = 247 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 163/247 (65%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W P + ALNA L+ + F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWPPHTVRDALNALLRQQSEAISILNVENVPDDFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ D+ Sbjct: 121 RSPPALNAKRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDIQK 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|91211615|ref|YP_541601.1| tRNA pseudouridine synthase A [Escherichia coli UTI89] gi|110642522|ref|YP_670252.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|117624508|ref|YP_853421.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157155365|ref|YP_001463662.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|191170294|ref|ZP_03031848.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215487531|ref|YP_002329962.1| tRNA pseudouridine synthase A [Escherichia coli O127:H6 str. E2348/69] gi|218559231|ref|YP_002392144.1| tRNA pseudouridine synthase A [Escherichia coli S88] gi|218690478|ref|YP_002398690.1| tRNA pseudouridine synthase A [Escherichia coli ED1a] gi|237704797|ref|ZP_04535278.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|300928489|ref|ZP_07144015.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|300986858|ref|ZP_07177840.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|306814570|ref|ZP_07448732.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|312967618|ref|ZP_07781833.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|331647974|ref|ZP_08349066.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331658401|ref|ZP_08359363.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331683990|ref|ZP_08384586.1| tRNA pseudouridine synthase A [Escherichia coli H299] gi|123049014|sp|Q0TFC8|TRUA_ECOL5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123084414|sp|Q1R994|TRUA_ECOUT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228696|sp|A1ADG7|TRUA_ECOK1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991161|sp|A7ZPD3|TRUA_ECO24 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708650|sp|B7MG82|TRUA_ECO45 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789634|sp|B7UFX6|TRUA_ECO27 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789636|sp|B7MXZ5|TRUA_ECO81 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91073189|gb|ABE08070.1| tRNA pseudouridylate synthase I [Escherichia coli UTI89] gi|110344114|gb|ABG70351.1| tRNA pseudouridine synthase A [Escherichia coli 536] gi|115513632|gb|ABJ01707.1| tRNA pseudouridine synthase A [Escherichia coli APEC O1] gi|157077395|gb|ABV17103.1| tRNA pseudouridine synthase A [Escherichia coli E24377A] gi|190909810|gb|EDV69395.1| tRNA pseudouridine synthase A [Escherichia coli F11] gi|215265603|emb|CAS10006.1| pseudouridylate synthase I [Escherichia coli O127:H6 str. E2348/69] gi|218366000|emb|CAR03744.1| pseudouridylate synthase I [Escherichia coli S88] gi|218428042|emb|CAR08961.2| pseudouridylate synthase I [Escherichia coli ED1a] gi|226901163|gb|EEH87422.1| tRNA pseudouridylate synthase I [Escherichia sp. 3_2_53FAA] gi|281179405|dbj|BAI55735.1| tRNA pseudouridine synthase A [Escherichia coli SE15] gi|294491901|gb|ADE90657.1| tRNA pseudouridine synthase A [Escherichia coli IHE3034] gi|300306347|gb|EFJ60867.1| tRNA pseudouridine synthase A [Escherichia coli MS 200-1] gi|300463484|gb|EFK26977.1| tRNA pseudouridine synthase A [Escherichia coli MS 187-1] gi|305851964|gb|EFM52416.1| tRNA pseudouridine synthase A [Escherichia coli NC101] gi|307626145|gb|ADN70449.1| tRNA pseudouridine synthase A [Escherichia coli UM146] gi|312287815|gb|EFR15720.1| tRNA pseudouridine synthase A [Escherichia coli 2362-75] gi|315288292|gb|EFU47691.1| tRNA pseudouridine synthase A [Escherichia coli MS 110-3] gi|315298147|gb|EFU57411.1| tRNA pseudouridine synthase A [Escherichia coli MS 16-3] gi|320196186|gb|EFW70810.1| tRNA pseudouridine synthase A [Escherichia coli WV_060327] gi|323187957|gb|EFZ73252.1| tRNA pseudouridine synthase A [Escherichia coli RN587/1] gi|323952111|gb|EGB47985.1| tRNA pseudouridine synthase A [Escherichia coli H252] gi|323955889|gb|EGB51643.1| tRNA pseudouridine synthase A [Escherichia coli H263] gi|324009238|gb|EGB78457.1| tRNA pseudouridine synthase A [Escherichia coli MS 57-2] gi|331043698|gb|EGI15836.1| tRNA pseudouridine synthase A [Escherichia coli M605] gi|331056649|gb|EGI28658.1| tRNA pseudouridine synthase A [Escherichia coli TA206] gi|331078942|gb|EGI50144.1| tRNA pseudouridine synthase A [Escherichia coli H299] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|325294776|ref|YP_004281290.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065224|gb|ADY73231.1| tRNA pseudouridine synthase A [Desulfurobacterium thermolithotrophum DSM 11699] Length = 250 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ YFGWQ +IQG I K + + V + GA RTD+GVHA Q Sbjct: 1 MKNIKLTIEYLGTNYFGWQILPEKPTIQGEIIKVLERILQHPVKLTGASRTDAGVHAFGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E L ALN L I I+++ V +F +R A + Y YRI R+ Sbjct: 61 VANFKTKKEIPLYKLQSALNGLL--PPDIKIISVEEVPLEFDSRRWAKGKRYRYRIFNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI-RTIDHFDVNS 179 P E R+W +P LD M A + L+G DFT+F RT+D+ ++ Sbjct: 119 VPSPFEYKRSWFVPYQLDISLMEKAKEFLIGTFDFTSFSKSDRNVDINPVRTVDNIEIVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I+ RSFL +R V +L VG GK D+++ + ++RK LAPP+GL Sbjct: 179 KESHIDFIFYGRSFLRHMVRIMVATLVEVGKGKLRPEDIKEIREKKNRKFAPFLAPPDGL 238 Query: 240 YFDSVEY 246 Y + V Y Sbjct: 239 YLEKVYY 245 >gi|320174675|gb|EFW49808.1| tRNA pseudouridine synthase A [Shigella dysenteriae CDC 74-1112] Length = 270 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTVPRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|114562572|ref|YP_750085.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] gi|122300225|sp|Q084R8|TRUA_SHEFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114333865|gb|ABI71247.1| tRNA pseudouridine synthase A [Shewanella frigidimarina NCIMB 400] Length = 261 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ S+Q IEKA+ V E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSFCGWQRQLEVDSVQAQIEKALSYVANEPITVSCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + +NA L S I VD FHAR+SA R Y Y I + Sbjct: 61 VHFDTDVQRPMTAWTQGVNANLPDSVAIRW--AKEVDDSFHARYSATARRYRYVIYNHKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +D M AAQ VG HDFT+FR++HCQ+ +P R + +V G Sbjct: 119 RPGILSAGVSHYHGDIDETLMHKAAQLFVGEHDFTSFRALHCQSKTPFRNVHQVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + + ++RK P A P GLY Sbjct: 179 MYVMVDIQANAFLHHMVRNIVGSLLQIGLGNQPIEWITELFALKNRKLAAPTAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|16273533|ref|NP_439786.1| tRNA pseudouridine synthase A [Haemophilus influenzae Rd KW20] gi|260580419|ref|ZP_05848248.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] gi|1174804|sp|P45291|TRUA_HAEIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1574492|gb|AAC23291.1| pseudouridylate synthase I (truA) [Haemophilus influenzae Rd KW20] gi|260093096|gb|EEW77030.1| tRNA pseudouridine synthase A [Haemophilus influenzae RdAW] Length = 269 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|193068139|ref|ZP_03049103.1| tRNA pseudouridine synthase A [Escherichia coli E110019] gi|192958418|gb|EDV88857.1| tRNA pseudouridine synthase A [Escherichia coli E110019] Length = 270 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPDSWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|51474025|ref|YP_067782.1| tRNA pseudouridine synthase A [Rickettsia typhi str. Wilmington] gi|62901283|sp|Q68VQ6|TRUA_RICTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51460337|gb|AAU04300.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington] Length = 245 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFSGWQRQAGVLSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + P + KA+N + + + N +V FHARFSA R Y+YRI+ R Sbjct: 61 IAHFDLSKYLEPYKIIKAINYF-VRPYAVGVWNCELVSNNFHARFSATSRHYIYRIVNRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRVWWISAPLDVLAMQQAATYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYLSAPSFLHYMVRNIVGSLVLVGKNIWQVEQIKNVLDAKDRKVAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|330820903|ref|YP_004349765.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] gi|327372898|gb|AEA64253.1| Pseudouridylate synthase [Burkholderia gladioli BSR3] Length = 277 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDELERALKAFALVPLQTVVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRSDFSWVRGTNAFL--PSTVAVQWAKPMPDSFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA+HL+G HDF++FRS CQ+ +P++ + D+ + G Sbjct: 119 RSPMLASRAGWVHTPLDIEAMREAARHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRASG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + + + L A++R+ P P+GLY Sbjct: 179 SFIHFRFRANAFLHHMVRNLMGCLIAVGRGRYPADWMAEVLAARNRERAAPTFAPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|289579109|ref|YP_003477736.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] gi|289528822|gb|ADD03174.1| tRNA pseudouridine synthase A [Thermoanaerobacter italicus Ab9] Length = 240 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 137/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++++Y+G+ Y GWQ QKN ++Q ++KAI VTGE V + GA RTD+GVHAL QVA+F Sbjct: 2 IVVQYDGTNYHGWQLQKNAITVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVANFK 61 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + L ALN+ L D I I V+ FHAR+SA R+ Y Y I+ R+ + Sbjct: 62 TNTKMPAEKLPYALNSVL--PDDIVITQAKDVEDSFHARYSAKRKRYKYIILNRKFRMPT 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W I L+ E M+ AA +L+G HDF+ F++ +S IRT+ + + I Sbjct: 120 MRNYCWHISYPLNVEKMKKAATYLIGTHDFSAFKASGSSKTSTIRTVYDLIIEKNEDFIN 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A FL+ +R VG+L VG GK ++ L ++DR + G APP+GLY + Sbjct: 180 IEIEADGFLYNMVRIIVGTLSYVGLGKIGENEVYHILASKDRTKAGITAPPQGLYLIKII 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|62901272|sp|Q65TC8|TRUA_MANSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 263 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 1 MKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ V FHARFSA R Y Y + + Sbjct: 61 VHFETNAIRPEKAWAFGTNANL--PDDIAVRWAKEVPDDFHARFSATARRYRYVLYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A + L+G +DF++FR+ CQ+++P R I H +V G Sbjct: 119 RSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTPWRNIHHLNVIRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G +E L ++RK P A EGLY Sbjct: 179 NFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRKLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVTY 243 >gi|54309813|ref|YP_130833.1| tRNA pseudouridine synthase A [Photobacterium profundum SS9] gi|51316618|sp|Q6LNU5|TRUA_PHOPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46914251|emb|CAG21031.1| Putative tRNA pseudouridine synthase A [Photobacterium profundum SS9] Length = 261 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y GWQRQ + S+Q +EKA+ + + + V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGAKYCGWQRQVDVDSVQERLEKALSHIANKPIAVFCAGRTDTGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + V +NA+L IS+ + V FHARFSA R Y Y I Sbjct: 61 VHFDVDVDRQMVAWTIGVNAHL--PRDISVRWATQVSDDFHARFSATARRYRYIIYNSAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+LVG HDFT+ R+ CQ+ SP R + H +V+ G Sbjct: 119 RPAIFGVGVSHYHGHLDEKKMHEAAQYLVGEHDFTSVRASQCQSRSPWRAMKHVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL VG G+ T ++ L+ +DR+ G A GLY Sbjct: 179 DFVIIDIKANAFVHHMVRNIAGSLIRVGRGQETPEWMKWVLEQKDRRVAGETAKAAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|320183774|gb|EFW58608.1| tRNA pseudouridine synthase A [Shigella flexneri CDC 796-83] Length = 270 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L D I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|220924613|ref|YP_002499915.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] gi|254789641|sp|B8IFQ2|TRUA_METNO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219949220|gb|ACL59612.1| tRNA pseudouridine synthase A [Methylobacterium nodulans ORS 2060] Length = 254 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ ++Q ++E+AI V VH AGRTD+GVHA Q Sbjct: 1 MPRYKLVVEYDGTAFAGWQRQAADRTVQQALEEAIERFVNRPVRVHCAGRTDAGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL REW + A NA+L+ + +S+L+ + V F AR SA++R Y YRI+ R+ Sbjct: 61 VVHLDLDREWRTDTVRDATNAHLR-PEPVSVLSAARVGPDFDARHSALKRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL +G W +P +LD M AAQ L+GRHDF+ FR+ CQASSP+RT+D DV Sbjct: 120 SPPALARGYVWHVPWALDAAAMHAAAQTLLGRHDFSAFRAAECQASSPLRTLDQLDVERR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R VG+L L G G+ + + L ++DR CGPLAP GL Sbjct: 180 GDEILVATSARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLT 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LTGVDY 245 >gi|89100313|ref|ZP_01173178.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] gi|89084934|gb|EAR64070.1| pseudouridylate synthase I [Bacillus sp. NRRL B-14911] Length = 245 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ I Y+GS + G+Q Q ++Q +E+A+ + G V + +GRTD+GVHA Sbjct: 1 MQRFKCKIAYDGSQFSGYQVQPGKRTVQLEVERALAKIHKGNPVKIFASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L I++ + + FHARF A + Y Y I Sbjct: 61 QVIHFDSPLAIPEDRWVTALNSLL--PKDIAVESTEKAAEGFHARFDACGKEYRYFIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ ++ P LD MR AA+HL+G HDF++F + +R I V Sbjct: 119 KIRSPFERHYSYHYPHPLDIRAMREAAEHLLGTHDFSSFCASRTDVEDKVREIRKVHVEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++E+ FL+ +R G+L G G + + +DR G AP EGL Sbjct: 179 AGEMLELHFTGSGFLYNMVRILTGTLLEAGAGTRDPGSFPEVISGRDRSLAGKTAPAEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVFY 245 >gi|324015393|gb|EGB84612.1| tRNA pseudouridine synthase A [Escherichia coli MS 60-1] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSRYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAGLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|300897000|ref|ZP_07115479.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] gi|300359181|gb|EFJ75051.1| tRNA pseudouridine synthase A [Escherichia coli MS 198-1] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|157144741|ref|YP_001452060.1| tRNA pseudouridine synthase A [Citrobacter koseri ATCC BAA-895] gi|166228694|sp|A8ADR1|TRUA_CITK8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157081946|gb|ABV11624.1| hypothetical protein CKO_00468 [Citrobacter koseri ATCC BAA-895] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E V V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAILGHGVTHFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVTRHGA 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR+ A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRRLSAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|309973317|gb|ADO96518.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2846] Length = 269 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|161502487|ref|YP_001569599.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189030140|sp|A9MJ57|TRUA_SALAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160863834|gb|ABX20457.1| hypothetical protein SARI_00531 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ V +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDVAWTLGVNANL--PGDIAVRWVKAVADDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ K LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 129 PAVLAKGVTHYYKPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHISVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|91792843|ref|YP_562494.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] gi|123061034|sp|Q12P55|TRUA_SHEDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91714845|gb|ABE54771.1| tRNA pseudouridine synthase A [Shewanella denitrificans OS217] Length = 261 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y GWQRQ S+Q +EKA+ L+ E + V AGRTD+GVH QV Sbjct: 1 MRVALGIEYDGSSYCGWQRQVEVDSVQAQLEKALSLIANEPIEVVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L DTI++ + +VD FHARFSA R Y Y I + Sbjct: 61 VHFDTTVIRPDSAWTLGVNANL--PDTIAVRWVKLVDDSFHARFSATARRYRYVIYNHKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + +D M AAQ L+G HDFT+FR++ CQ+ SP R++ +V G Sbjct: 119 RPGLLRHGLSHYHGDIDETLMHQAAQQLLGEHDFTSFRAMQCQSKSPFRSVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + K + +DR++ A P GLY Sbjct: 179 MYIMVDIKANAFLHHMVRNIVGSLLEIGLGNQPLNWISKLIAVKDRRQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|329890848|ref|ZP_08269191.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] gi|328846149|gb|EGF95713.1| tRNA pseudouridine synthase A [Brevundimonas diminuta ATCC 11568] Length = 249 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 116/246 (47%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +EY+GS Y G+Q Q ++QG+IE AI +G+ V + AGRTD+GVHA Q Sbjct: 1 MPRYRFTVEYDGSAYNGFQAQLGQPTVQGAIETAITAFSGQAVRIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL R+W + ALNA+L + +++L+ + V +HARF+A R YLYRI+ R Sbjct: 61 TCHVDLERDWPAQTVMNALNAHLV-KEAVAVLDCTPVSDDWHARFTANGRKYLYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL++GR W + K LD E M AAQ L+G HDFTTFR CQ++SPI+T+D V+ Sbjct: 120 GRPALDRGRVWHVRKPLDAEAMHAAAQALIGLHDFTTFRDAACQSASPIKTLDVARVSRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + ARSFLH Q+RS GS+ VG G+W DL AL+A+DR CGP+AP +GLY Sbjct: 180 GEEVHLVFEARSFLHRQVRSMAGSIAEVGLGRWRPADLADALEARDRARCGPVAPSDGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTGVTY 245 >gi|255025629|ref|ZP_05297615.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-003] Length = 248 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|219853559|ref|YP_002470681.1| hypothetical protein CKR_0216 [Clostridium kluyveri NBRC 12016] gi|219567283|dbj|BAH05267.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 247 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++IEY+G+ Y GWQRQ N +IQ +E+AI TGE V G+ RTD+GVHA V Sbjct: 5 KNIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + + LN L + I++L+ VD FH+R+ + Y Y I+T Sbjct: 65 CNFFTASKIPTSNIKMVLNTLL--PEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDR 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + + + LD E ++ + ++ +G HDF+ F+ A S IRTI V Sbjct: 123 PPVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEK 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+I+ +V FL+ +R +G+L VG G+++ ++ L+++DR + G P +GL Sbjct: 183 NIIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCL 242 Query: 242 DSVEY 246 + V Y Sbjct: 243 EKVFY 247 >gi|153008677|ref|YP_001369892.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] gi|166228741|sp|A6WYK9|TRUA_OCHA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151560565|gb|ABS14063.1| tRNA pseudouridine synthase A [Ochrobactrum anthropi ATCC 49188] Length = 251 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 128/248 (51%), Positives = 170/248 (68%), Gaps = 1/248 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ Y GWQRQ+NG ++Q +IE A GE + + AGRTD+GVHA Q Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQENGHAVQNAIELAFKKFCGEDLTLSAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL ++W + A+NA+L + + +SILN+ F ARFSA R YLYRI R Sbjct: 61 VVHVDLTKDWGAGKVRDAVNAHLVMADERVSILNVERTTDTFDARFSARARHYLYRIHNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLA++ RAW + K LD E M AA+ L+G HDFTTFR+ CQA SP++T+D DV Sbjct: 121 RAPLAVDYQRAWWVQKRLDAEAMHEAAKRLLGEHDFTTFRATQCQAKSPVKTLDRLDVIR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+DRK CG +APP GL Sbjct: 181 NGDYVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAKDRKACGQVAPPYGL 240 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 241 YLIGVDYA 248 >gi|15802865|ref|NP_288892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 EDL933] gi|15832456|ref|NP_311229.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. Sakai] gi|26248707|ref|NP_754747.1| tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|82777729|ref|YP_404078.1| tRNA pseudouridine synthase A [Shigella dysenteriae Sd197] gi|168748172|ref|ZP_02773194.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|168755075|ref|ZP_02780082.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|168761239|ref|ZP_02786246.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|168767949|ref|ZP_02792956.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|168772951|ref|ZP_02797958.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|168780178|ref|ZP_02805185.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|168787230|ref|ZP_02812237.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|168798493|ref|ZP_02823500.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|170680088|ref|YP_001744518.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|195935697|ref|ZP_03081079.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4024] gi|208807895|ref|ZP_03250232.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208811862|ref|ZP_03253191.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208821544|ref|ZP_03261864.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209397276|ref|YP_002271727.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|217327172|ref|ZP_03443255.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218695917|ref|YP_002403584.1| tRNA pseudouridine synthase A [Escherichia coli 55989] gi|218700794|ref|YP_002408423.1| tRNA pseudouridine synthase A [Escherichia coli IAI39] gi|218705848|ref|YP_002413367.1| tRNA pseudouridine synthase A [Escherichia coli UMN026] gi|227887378|ref|ZP_04005183.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254794211|ref|YP_003079048.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|261223227|ref|ZP_05937508.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK2000] gi|261259223|ref|ZP_05951756.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. FRIK966] gi|291283559|ref|YP_003500377.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|293405784|ref|ZP_06649776.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|293410675|ref|ZP_06654251.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|293415611|ref|ZP_06658254.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|293446655|ref|ZP_06663077.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|298381467|ref|ZP_06991066.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300822193|ref|ZP_07102335.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300936897|ref|ZP_07151784.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300983542|ref|ZP_07176636.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|301024150|ref|ZP_07187860.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|301049077|ref|ZP_07196061.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|301303220|ref|ZP_07209345.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|307311121|ref|ZP_07590765.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|309784972|ref|ZP_07679605.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|309793201|ref|ZP_07687629.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|331663835|ref|ZP_08364745.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331669017|ref|ZP_08369865.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331673820|ref|ZP_08374583.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331678264|ref|ZP_08378939.1| tRNA pseudouridine synthase A [Escherichia coli H591] gi|54039780|sp|P65845|TRUA_ECO57 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042085|sp|P65844|TRUA_ECOL6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123755724|sp|Q32DL8|TRUA_SHIDS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708651|sp|B7NNZ9|TRUA_ECO7I RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708653|sp|B7N5T0|TRUA_ECOLU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708654|sp|B1LLS3|TRUA_ECOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057729|sp|B5YXV8|TRUA_ECO5E RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789635|sp|B7LBH2|TRUA_ECO55 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12516677|gb|AAG57447.1|AE005463_10 pseudouridylate synthase I [Escherichia coli O157:H7 str. EDL933] gi|26109112|gb|AAN81315.1|AE016763_274 tRNA pseudouridine synthase A [Escherichia coli CFT073] gi|13362672|dbj|BAB36625.1| pseudouridylate synthase I [Escherichia coli O157:H7 str. Sakai] gi|81241877|gb|ABB62587.1| pseudouridylate synthase I [Shigella dysenteriae Sd197] gi|170517806|gb|ACB15984.1| tRNA pseudouridine synthase A [Escherichia coli SMS-3-5] gi|187771144|gb|EDU34988.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4196] gi|188017261|gb|EDU55383.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4113] gi|189001906|gb|EDU70892.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4076] gi|189357607|gb|EDU76026.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4401] gi|189362830|gb|EDU81249.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4486] gi|189368293|gb|EDU86709.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4501] gi|189372810|gb|EDU91226.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC869] gi|189378874|gb|EDU97290.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC508] gi|208727696|gb|EDZ77297.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4206] gi|208733139|gb|EDZ81826.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4045] gi|208741667|gb|EDZ89349.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4042] gi|209158676|gb|ACI36109.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC4115] gi|209764788|gb|ACI80706.1| pseudouridylate synthase I [Escherichia coli] gi|209764790|gb|ACI80707.1| pseudouridylate synthase I [Escherichia coli] gi|209764792|gb|ACI80708.1| pseudouridylate synthase I [Escherichia coli] gi|209764796|gb|ACI80710.1| pseudouridylate synthase I [Escherichia coli] gi|217319539|gb|EEC27964.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14588] gi|218352649|emb|CAU98430.1| pseudouridylate synthase I [Escherichia coli 55989] gi|218370780|emb|CAR18593.1| pseudouridylate synthase I [Escherichia coli IAI39] gi|218432945|emb|CAR13839.1| pseudouridylate synthase I [Escherichia coli UMN026] gi|222034074|emb|CAP76815.1| tRNA pseudouridine synthase A [Escherichia coli LF82] gi|227835728|gb|EEJ46194.1| tRNA pseudouridine synthase A [Escherichia coli 83972] gi|254593611|gb|ACT72972.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. TW14359] gi|284922306|emb|CBG35391.1| tRNA pseudouridine synthase A [Escherichia coli 042] gi|290763432|gb|ADD57393.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. CB9615] gi|291323485|gb|EFE62913.1| tRNA pseudouridine synthase A [Escherichia coli B088] gi|291427992|gb|EFF01019.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1412] gi|291433259|gb|EFF06238.1| tRNA pseudouridine synthase A [Escherichia coli B185] gi|291471143|gb|EFF13627.1| tRNA pseudouridine synthase A [Escherichia coli B354] gi|298278909|gb|EFI20423.1| tRNA pseudouridine synthase A [Escherichia coli FVEC1302] gi|300299124|gb|EFJ55509.1| tRNA pseudouridine synthase A [Escherichia coli MS 185-1] gi|300396694|gb|EFJ80232.1| tRNA pseudouridine synthase A [Escherichia coli MS 69-1] gi|300408504|gb|EFJ92042.1| tRNA pseudouridine synthase A [Escherichia coli MS 45-1] gi|300458008|gb|EFK21501.1| tRNA pseudouridine synthase A [Escherichia coli MS 21-1] gi|300525323|gb|EFK46392.1| tRNA pseudouridine synthase A [Escherichia coli MS 119-7] gi|300841394|gb|EFK69154.1| tRNA pseudouridine synthase A [Escherichia coli MS 124-1] gi|306908627|gb|EFN39124.1| tRNA pseudouridine synthase A [Escherichia coli W] gi|307554380|gb|ADN47155.1| tRNA pseudouridine synthase A [Escherichia coli ABU 83972] gi|308123487|gb|EFO60749.1| tRNA pseudouridine synthase A [Escherichia coli MS 145-7] gi|308927342|gb|EFP72816.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1617] gi|312946937|gb|ADR27764.1| tRNA pseudouridine synthase A [Escherichia coli O83:H1 str. NRG 857C] gi|315061611|gb|ADT75938.1| pseudouridylate synthase I [Escherichia coli W] gi|315255255|gb|EFU35223.1| tRNA pseudouridine synthase A [Escherichia coli MS 85-1] gi|315292275|gb|EFU51627.1| tRNA pseudouridine synthase A [Escherichia coli MS 153-1] gi|320192058|gb|EFW66703.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. EC1212] gi|320641146|gb|EFX10625.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. G5101] gi|320646361|gb|EFX15284.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. 493-89] gi|320651631|gb|EFX20011.1| tRNA pseudouridine synthase A [Escherichia coli O157:H- str. H 2687] gi|320657383|gb|EFX25185.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662918|gb|EFX30242.1| tRNA pseudouridine synthase A [Escherichia coli O55:H7 str. USDA 5905] gi|320667662|gb|EFX34573.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. LSU-61] gi|323184362|gb|EFZ69738.1| tRNA pseudouridine synthase A [Escherichia coli 1357] gi|323377808|gb|ADX50076.1| tRNA pseudouridine synthase A [Escherichia coli KO11] gi|323944831|gb|EGB40897.1| tRNA pseudouridine synthase A [Escherichia coli H120] gi|326339671|gb|EGD63482.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1125] gi|326344133|gb|EGD67894.1| tRNA pseudouridine synthase A [Escherichia coli O157:H7 str. 1044] gi|331059634|gb|EGI31611.1| tRNA pseudouridine synthase A [Escherichia coli TA143] gi|331064211|gb|EGI36122.1| tRNA pseudouridine synthase A [Escherichia coli TA271] gi|331069093|gb|EGI40485.1| tRNA pseudouridine synthase A [Escherichia coli TA280] gi|331074724|gb|EGI46044.1| tRNA pseudouridine synthase A [Escherichia coli H591] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|116873964|ref|YP_850745.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466636|sp|A0ALT4|TRUA_LISW6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116742842|emb|CAK21966.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 248 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQIQPNARTVQAEIEKALKKMHKGKNVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITADKFQKAL--QVMTPFDISFLTVDEAPADFHARFGTVGKEYRYIVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKLASECLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 I FL+ +R G+L G G+ +S D+ +AL A+DR++ APP+ Sbjct: 179 EDEETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISSEDITEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|260582150|ref|ZP_05849944.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] gi|260094782|gb|EEW78676.1| tRNA pseudouridine synthase A [Haemophilus influenzae NT127] Length = 269 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRQEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|319776538|ref|YP_004139026.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|329124048|ref|ZP_08252595.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] gi|317451129|emb|CBY87362.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3047] gi|327467473|gb|EGF12971.1| tRNA pseudouridine synthase A [Haemophilus aegyptius ATCC 11116] Length = 269 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHRAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|326792573|ref|YP_004310394.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543337|gb|ADZ85196.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +I+ Y+G+ Y G+ +Q N ++IQG+++ AI + V GAGRTD GVHA Q Sbjct: 1 MKRFKLIVAYDGTNYNGFAKQPNATTIQGTLDVAIAKIVQHEVRTLGAGRTDRGVHAFAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 FD + L KA+N+ L IS+ ++ V + FH RF A R++Y Y+I+ + Sbjct: 61 CCVFDSDTKIPADRLAKAINSQL--PADISVKSVEEVSEDFHPRFGAKRKTYRYQILNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L P LD E M+ AA ++G HDF F + +R I DV Sbjct: 119 IRDPFLYKYALLYPYELDVERMQEAANEMIGEHDFACFCAAGSTVKDTVRIIYSIDVKKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I V FL+ +R +G+L V + K T ++ +++++R+ GP PP+GL Sbjct: 179 GDLVSIDVCGNGFLYNMVRIIIGTLLDVNENKITKDSIKTIIESKNRELAGPTVPPQGLT 238 Query: 241 FDSVEYS 247 ++ Y+ Sbjct: 239 MLNIVYN 245 >gi|260869040|ref|YP_003235442.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|257765396|dbj|BAI36891.1| pseudouridylate synthase I [Escherichia coli O111:H- str. 11128] gi|323176756|gb|EFZ62346.1| tRNA pseudouridine synthase A [Escherichia coli 1180] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|227114786|ref|ZP_03828442.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 283 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSLYYGWQRQIDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I + Sbjct: 84 HFTTHAIRKDAAWTMGVNANL--PPDIAVRWVKTVDEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSRGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLYLV 261 Query: 243 SVEY 246 +V+Y Sbjct: 262 AVDY 265 >gi|54294200|ref|YP_126615.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Lens] gi|62901233|sp|Q5WX34|TRUA_LEGPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53754032|emb|CAH15505.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Lens] Length = 262 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ N++L I + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKDRSIRAWIHGANSFL--PKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I V G Sbjct: 119 RPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP GLY Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPSYGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVTY 243 >gi|24113690|ref|NP_708200.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 301] gi|30063744|ref|NP_837915.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|110806283|ref|YP_689803.1| tRNA pseudouridine synthase A [Shigella flexneri 5 str. 8401] gi|187733598|ref|YP_001881140.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|191168731|ref|ZP_03030509.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|193062289|ref|ZP_03043384.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194432876|ref|ZP_03065160.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209919818|ref|YP_002293902.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218554873|ref|YP_002387786.1| tRNA pseudouridine synthase A [Escherichia coli IAI1] gi|256017524|ref|ZP_05431389.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|260844905|ref|YP_003222683.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|300818078|ref|ZP_07098290.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300918510|ref|ZP_07135103.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300924588|ref|ZP_07140550.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|301328823|ref|ZP_07221865.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|331653762|ref|ZP_08354763.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332278531|ref|ZP_08390944.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|42559800|sp|Q83QR3|TRUA_SHIFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122957319|sp|Q0T2G7|TRUA_SHIF8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708652|sp|B7M6J9|TRUA_ECO8A RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057730|sp|B6I4U6|TRUA_ECOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691701|sp|B2TWA0|TRUA_SHIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24052758|gb|AAN43907.1| pseudouridylate synthase I [Shigella flexneri 2a str. 301] gi|30041999|gb|AAP17725.1| pseudouridylate synthase I [Shigella flexneri 2a str. 2457T] gi|110615831|gb|ABF04498.1| pseudouridylate synthase I [Shigella flexneri 5 str. 8401] gi|187430590|gb|ACD09864.1| tRNA pseudouridine synthase A [Shigella boydii CDC 3083-94] gi|190901221|gb|EDV60992.1| tRNA pseudouridine synthase A [Escherichia coli B7A] gi|192931955|gb|EDV84554.1| tRNA pseudouridine synthase A [Escherichia coli E22] gi|194418864|gb|EDX34949.1| tRNA pseudouridine synthase A [Shigella dysenteriae 1012] gi|209913077|dbj|BAG78151.1| tRNA pseudouridine synthase A [Escherichia coli SE11] gi|218361641|emb|CAQ99237.1| pseudouridylate synthase I [Escherichia coli IAI1] gi|257760052|dbj|BAI31549.1| pseudouridylate synthase I [Escherichia coli O103:H2 str. 12009] gi|281601759|gb|ADA74743.1| tRNA pseudouridine synthase A [Shigella flexneri 2002017] gi|300414324|gb|EFJ97634.1| tRNA pseudouridine synthase A [Escherichia coli MS 115-1] gi|300419219|gb|EFK02530.1| tRNA pseudouridine synthase A [Escherichia coli MS 182-1] gi|300529222|gb|EFK50284.1| tRNA pseudouridine synthase A [Escherichia coli MS 107-1] gi|300844772|gb|EFK72532.1| tRNA pseudouridine synthase A [Escherichia coli MS 78-1] gi|313651142|gb|EFS15541.1| tRNA pseudouridine synthase A [Shigella flexneri 2a str. 2457T] gi|320178707|gb|EFW53670.1| tRNA pseudouridine synthase A [Shigella boydii ATCC 9905] gi|320199909|gb|EFW74498.1| tRNA pseudouridine synthase A [Escherichia coli EC4100B] gi|323172001|gb|EFZ57645.1| tRNA pseudouridine synthase A [Escherichia coli LT-68] gi|324020840|gb|EGB90059.1| tRNA pseudouridine synthase A [Escherichia coli MS 117-3] gi|324117804|gb|EGC11703.1| tRNA pseudouridine synthase A [Escherichia coli E1167] gi|331048611|gb|EGI20687.1| tRNA pseudouridine synthase A [Escherichia coli M718] gi|332088449|gb|EGI93567.1| tRNA pseudouridine synthase A [Shigella boydii 5216-82] gi|332090156|gb|EGI95255.1| tRNA pseudouridine synthase A [Shigella dysenteriae 155-74] gi|332100883|gb|EGJ04229.1| tRNA pseudouridine synthase A [Shigella sp. D9] gi|332754968|gb|EGJ85333.1| tRNA pseudouridine synthase A [Shigella flexneri 4343-70] gi|332755368|gb|EGJ85732.1| tRNA pseudouridine synthase A [Shigella flexneri K-671] gi|332756607|gb|EGJ86958.1| tRNA pseudouridine synthase A [Shigella flexneri 2747-71] gi|332766138|gb|EGJ96348.1| tRNA pseudouridine synthase A [Shigella flexneri 2930-71] gi|333001463|gb|EGK21031.1| tRNA pseudouridine synthase A [Shigella flexneri VA-6] gi|333001944|gb|EGK21510.1| tRNA pseudouridine synthase A [Shigella flexneri K-218] gi|333002687|gb|EGK22247.1| tRNA pseudouridine synthase A [Shigella flexneri K-272] gi|333016355|gb|EGK35686.1| tRNA pseudouridine synthase A [Shigella flexneri K-304] gi|333016571|gb|EGK35901.1| tRNA pseudouridine synthase A [Shigella flexneri K-227] Length = 270 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|217966203|ref|YP_002351881.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|254789639|sp|B8DB42|TRUA_LISMH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217335473|gb|ACK41267.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23] gi|307572187|emb|CAR85366.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99] Length = 248 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRDFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|229542172|ref|ZP_04431232.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] gi|229326592|gb|EEN92267.1| tRNA pseudouridine synthase A [Bacillus coagulans 36D1] Length = 245 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ + G V +GRTD+GVHA+ Sbjct: 1 MKRVKCTVSYDGSRFAGYQVQPGQRTVQQEIEKALATLHKGRHVKTAASGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L IS+ + D FHAR+S + Y YRI Sbjct: 61 QVIHFDTDLSIPETSWPAALNSLL--PGDISVSKAAYADPAFHARYSVKEKEYRYRIYFS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A + SLD E M AA+ ++G HDFT+F S + IRT+ Sbjct: 119 HVRSPFKHRYALRVWYSLDIEAMEAAAETVLGTHDFTSFCSAKTEVEDKIRTLKEIRFLQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I FL+ +R G+L +G GK ++ + L+ ++R G APPEGL Sbjct: 179 QDDELVICFKGNGFLYNMVRILTGTLLEIGSGKRDPGEMREILEKRNRIYAGKTAPPEGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWKVSY 245 >gi|68249766|ref|YP_248878.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] gi|81335806|sp|Q4QL79|TRUA_HAEI8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68057965|gb|AAX88218.1| tRNA pseudouridine synthase A [Haemophilus influenzae 86-028NP] Length = 269 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396] Length = 283 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GS Y GWQ Q S+Q +E A+ V V V AGRTD+GVHA+ QV Sbjct: 23 RVALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAKVADHPVSVVCAGRTDAGVHAVNQV 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ P +N +L +S+ V + FHAR++A RSY Y I Sbjct: 83 VHFETKALRSPYSWAMGVNHFL--PADVSVSWAGAVPEDFHARYTATSRSYRYVIYNHPI 140 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E+M A HL+G +DF+ FR CQ+ SP R + +V+ FG Sbjct: 141 RPAWLNNSVTWNYRPLDVESMSAAGAHLIGENDFSAFRGSDCQSKSPFRNLTRLEVSRFG 200 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ I V A +FLH +R+ G+L VG GK S + L ++ R + G APP GLY Sbjct: 201 DMVVIEVEANAFLHHMVRNISGTLMAVGTGKKPSDWVADVLASKKRSKAGVTAPPFGLYL 260 Query: 242 DSVEY 246 SV Y Sbjct: 261 TSVTY 265 >gi|16761293|ref|NP_456910.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141011|ref|NP_804353.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412735|ref|YP_149810.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180940|ref|YP_217357.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612896|ref|YP_001586861.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549625|ref|ZP_02343384.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168229744|ref|ZP_02654802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237394|ref|ZP_02662452.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242494|ref|ZP_02667426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168465920|ref|ZP_02699790.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817894|ref|ZP_02829894.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443793|ref|YP_002041632.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450234|ref|YP_002046424.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471784|ref|ZP_03077768.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734499|ref|YP_002115439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248953|ref|YP_002147329.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361669|ref|YP_002141305.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245997|ref|YP_002216441.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388490|ref|ZP_03215102.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929209|ref|ZP_03220352.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353481|ref|YP_002227282.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857786|ref|YP_002244437.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213022210|ref|ZP_03336657.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161334|ref|ZP_03347044.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426977|ref|ZP_03359727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646800|ref|ZP_03376853.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852689|ref|ZP_03382221.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583142|ref|YP_002636940.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912353|ref|ZP_04656190.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827487|ref|ZP_06546099.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|24212558|sp|Q8Z500|TRUA_SALTI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901206|sp|Q5PCV6|TRUA_SALPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81309634|sp|Q57LY6|TRUA_SALCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030141|sp|A9N476|TRUA_SALPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689938|sp|B5BCH8|TRUA_SALPK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690009|sp|B5EZQ2|TRUA_SALA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690247|sp|B4TBN7|TRUA_SALHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690344|sp|B5FPL2|TRUA_SALDC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690447|sp|B5R349|TRUA_SALEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690504|sp|B5RCJ3|TRUA_SALG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693568|sp|B4SZP0|TRUA_SALNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238693647|sp|B4TQA4|TRUA_SALSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764863|sp|C0PZZ5|TRUA_SALPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292042|pir||AF0802 pseudouridylate synthase (EC 4.2.1.70) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503592|emb|CAD07600.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi] gi|29136636|gb|AAO68202.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56126992|gb|AAV76498.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128573|gb|AAX66276.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362260|gb|ABX66028.1| hypothetical protein SPAB_00602 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402456|gb|ACF62678.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408538|gb|ACF68757.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458148|gb|EDX46987.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710001|gb|ACF89222.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631471|gb|EDX50031.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093145|emb|CAR58589.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212656|gb|ACH50053.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289616|gb|EDY28979.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940513|gb|ACH77846.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605588|gb|EDZ04133.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321753|gb|EDZ06952.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273262|emb|CAR38227.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325206|gb|EDZ13045.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335762|gb|EDZ22526.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338670|gb|EDZ25434.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344778|gb|EDZ31542.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709589|emb|CAR33934.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467669|gb|ACN45499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086803|emb|CBY96575.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617114|gb|EFY14020.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617581|gb|EFY14480.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624790|gb|EFY21619.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630340|gb|EFY27110.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634520|gb|EFY31253.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639231|gb|EFY35923.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640094|gb|EFY36761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645687|gb|EFY42211.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652051|gb|EFY48414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656223|gb|EFY52520.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659375|gb|EFY55622.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665835|gb|EFY62018.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669927|gb|EFY66068.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673912|gb|EFY70009.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678671|gb|EFY74727.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683535|gb|EFY79549.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687610|gb|EFY83580.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715420|gb|EFZ06991.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193556|gb|EFZ78761.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198463|gb|EFZ83565.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204575|gb|EFZ89578.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208487|gb|EFZ93426.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213625|gb|EFZ98414.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218340|gb|EGA03050.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220106|gb|EGA04572.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224520|gb|EGA08802.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232335|gb|EGA16438.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235632|gb|EGA19716.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241209|gb|EGA25245.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244951|gb|EGA28953.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250070|gb|EGA33964.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253854|gb|EGA37679.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254991|gb|EGA38782.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259823|gb|EGA43455.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264157|gb|EGA47664.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270855|gb|EGA54293.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624193|gb|EGE30538.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628574|gb|EGE34917.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 270 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|300691102|ref|YP_003752097.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] gi|299078162|emb|CBJ50805.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum PSI07] Length = 274 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFAGVELPTIVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 VVHLDTDLVRDPFSWVRGTNAFL--PPTVAVRWAQEVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + D M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + +R+ +FLH +R+ +G L +G GK + + L A+DRK P P Sbjct: 179 ARGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPVAWMGEVLAARDRKVAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|187921475|ref|YP_001890507.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] gi|238691591|sp|B2T9N4|TRUA_BURPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187719913|gb|ACD21136.1| tRNA pseudouridine synthase A [Burkholderia phytofirmans PsJN] Length = 270 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q + +++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHRNTVQDELERALREFARTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + V + N++L TIS+ + +FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRADVSWVRGTNSFL--PKTISVQWAKPMPDEFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + M+ AA HL+G HDF+ FRS CQA +P++ + DV Sbjct: 119 VRSPMLATRAGWVHTSLDVDAMQKAAAHLLGEHDFSAFRSSQCQAKTPVKHLYQIDVKQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L ++DR P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGGGRRPVEWMAEVLASRDRDFAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 255 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ Y GWQ Q+N SIQ I KA+ VTGE + HG+GRTD+GVHA Q Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + + ALN L I+IL + + FHAR+SAI + Y Y I+ Sbjct: 61 VASFQLHSKIPAERISFALNGKL--PRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + + +P LD + M+ A++ L+G HDF F + Q S +R ID + ++ Sbjct: 119 HGSALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + FL+ +R VGSL +G GK L+ L+ Q+R+ AP +GLY Sbjct: 179 GSQIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LQKVFY 244 >gi|16765695|ref|NP_461310.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993057|ref|ZP_02574152.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168261608|ref|ZP_02683581.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263425|ref|ZP_03163499.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|24212561|sp|Q8ZNB9|TRUA_SALTY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16420911|gb|AAL21269.1| pseudouridylate synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197241680|gb|EDY24300.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328800|gb|EDZ15564.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205349584|gb|EDZ36215.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247574|emb|CBG25401.1| Pseudouridine synthase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994470|gb|ACY89355.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158926|emb|CBW18439.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913359|dbj|BAJ37333.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222930|gb|EFX48001.1| tRNA pseudouridine synthase A ; tRNA Psi38, Psi39 and Psi40 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130701|gb|ADX18131.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989301|gb|AEF08284.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 270 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|301170402|emb|CBW30008.1| pseudouridylate synthase I [Haemophilus influenzae 10810] Length = 269 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDTEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|160935852|ref|ZP_02083227.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] gi|158441596|gb|EDP19306.1| hypothetical protein CLOBOL_00746 [Clostridium bolteae ATCC BAA-613] Length = 248 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + Y+G+ Y GWQ+Q N +IQG +E + + G V VHG+GRTD+GVHA Q Sbjct: 1 MNIGVWLSYDGTRYDGWQKQGNTDRTIQGKLEAVLEKLEGSPVEVHGSGRTDAGVHAESQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + P + + +N YL + I++ ++ ++FH+R +A+R++Y Y+I T Sbjct: 61 VANFHLAKNMTPDEIMRYMNRYL--PEDIAVTRACVMPERFHSRLNALRKTYRYQIETAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + + + LD M AA L G HD+ +F S IRTI+ Sbjct: 119 KKNVFERYYYYGLGQDLDVGKMEQAAAILTGTHDYKSFCGNKKMKKSTIRTIESICFYRM 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I FL +R G+L VG GK ++ L+A DR G APPEGL+ Sbjct: 179 GSRIHISFTGNGFLQQMVRILSGTLIEVGTGKRKPEEMAAILEAGDRSMAGFTAPPEGLF 238 Query: 241 FDSVEY 246 + VEY Sbjct: 239 LEKVEY 244 >gi|209764794|gb|ACI80709.1| pseudouridylate synthase I [Escherichia coli] Length = 270 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNYRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|227530236|ref|ZP_03960285.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] gi|227349848|gb|EEJ40139.1| tRNA pseudouridine synthase A [Lactobacillus vaginalis ATCC 49540] Length = 256 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q + +++ ++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGSNFSGFQIQPHKRTVEQVLKNAVNKIAKHPTPEIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA ++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDSDFHARYSAHNKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ LD MR AA++ +G HDFT+F + QA S +RT+ D+ Sbjct: 119 QGEFVNPFKRNYTAHFKYPLDLTLMRKAAKNFIGEHDFTSFVASGSQAKSNVRTVYKIDI 178 Query: 178 NSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ QIR V L +G + D+++ L A+DR + AP Sbjct: 179 KRDKLRNEVVFDFTGNGFLYNQIRIMVAFLLEIGSKQRPVDDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|312870517|ref|ZP_07730636.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] gi|311093979|gb|EFQ52304.1| tRNA pseudouridine synthase A [Lactobacillus oris PB013-T2-3] Length = 256 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q + +++ ++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGANFSGFQIQPHKRTVEQVLKNAVNKIAKYPDPPISVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + + KALN+ L I + VD+ FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDLPYQLSDESMRKALNSLL--PLDILVKKAERVDESFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-- 175 ++ +D + MR+AA+ +G HDFT+F + QA S +RT++ Sbjct: 119 QGDFVDPFKRNYTAHYKVPVDIDKMRLAAKDFIGEHDFTSFVASGSQAKSNVRTVEKITV 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D + N + FL+ QIR V L VG G+ +D+++ L A+DR + AP Sbjct: 179 DRDPAQNEVVFEFTGNGFLYNQIRIMVAFLLEVGSGQRPVSDVKRVLAAKDRTQARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY SV+Y Sbjct: 239 ASGLYLVSVDY 249 >gi|50121981|ref|YP_051148.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] gi|62901300|sp|Q6D2N7|TRUA_ERWCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49612507|emb|CAG75957.1| tRNA pseudouridine synthase A [Pectobacterium atrosepticum SCRI1043] Length = 283 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQIDVASVQACLEKALSKVADEPIEVLCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKAVHEDFHARFSATARRYRYIIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R ++H V GN Sbjct: 142 PAVLSHGMTHFYHPLDVERMERAGQCLLGENDFTSFRAVQCQSRTPWRNVNHLKVTRHGN 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR G A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMDVGCGNRPESWIAELLAAKDRTLAGATARAEGLYLV 261 Query: 243 SVEY 246 +V+Y Sbjct: 262 AVDY 265 >gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] gi|158446190|gb|EDP23185.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270] Length = 247 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS +FG+Q+QKN ++QG IE A+ +T E + + AGRTD GVH+LR Sbjct: 1 MRNIMLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRH 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +F + ALN +L + +L+ V + FH+RF A ++Y Y + + Sbjct: 61 IINFHTESNVGVLNFKTALNHFL--PIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P LD E M+ A ++ +GR F F +PIR I+ F++ Sbjct: 119 VMDPIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + +SF+ Q+R VG+L +G G +LE+ L ++DR G P GLY Sbjct: 179 NNDLIFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LMEILY 244 >gi|148544665|ref|YP_001272035.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|184154018|ref|YP_001842359.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194466922|ref|ZP_03072909.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227363788|ref|ZP_03847895.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|325682999|ref|ZP_08162515.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] gi|166991164|sp|A5VLH4|TRUA_LACRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229557996|sp|B2G8U7|TRUA_LACRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148531699|gb|ABQ83698.1| tRNA pseudouridine synthase A [Lactobacillus reuteri DSM 20016] gi|183225362|dbj|BAG25879.1| tRNA pseudouridine synthase A [Lactobacillus reuteri JCM 1112] gi|194453958|gb|EDX42855.1| tRNA pseudouridine synthase A [Lactobacillus reuteri 100-23] gi|227071145|gb|EEI09461.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM2-3] gi|324977349|gb|EGC14300.1| tRNA pseudouridine synthase A [Lactobacillus reuteri MM4-1A] Length = 256 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + Y+G+ + G+Q Q N +++ +++ A+ + + V G+GRTD+GVHA Sbjct: 1 MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPTPAIPVIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD+ + KALN+ L I I +VD FHAR+SA R++Y YR+ Sbjct: 61 LNQVAHFDIPYHLSNESMRKALNSIL--PLDILIKKAELVDNDFHARYSAHRKTYRYRVD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ L+ E MR AA LVG HDFT+F + QA S +RTI++ + Sbjct: 119 QGEFVNPFKRNYTSHFKYPLNLEKMRKAADDLVGTHDFTSFVASGSQAKSNVRTIENITI 178 Query: 178 NSF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N + FL+ Q+R V L +G + D+ + L+A+DR AP Sbjct: 179 KRDEVRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLKAKDRTLARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|170767244|ref|ZP_02901697.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] gi|170123578|gb|EDS92509.1| tRNA pseudouridine synthase A [Escherichia albertii TW07627] Length = 270 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|145637534|ref|ZP_01793192.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] gi|145269340|gb|EDK09285.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittHH] Length = 269 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] gi|238688683|sp|B1KKN8|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908] Length = 261 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSKYFGWQRQVEVDSVQAQLERALSKVANEPISVHCAGRTDTGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L D I++ +VD+ FHARFSA R Y Y I Q Sbjct: 61 VHFDTDAIRKESAWTLGVNVSL--PDDIAVRWAKVVDEDFHARFSATARRYRYMIYNYQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V G Sbjct: 119 RPGILRSGVSHYRTHLDENKMHEAAQHFVGEHDFTSFRALHCQSKSPNRNVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL +G G + + + L +DR + P A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLIEIGLGHQSHEWIPELLALKDRSKAAPTAKPNGLYM 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|8569326|pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution gi|8569327|pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution Length = 264 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 5 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 65 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 123 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 183 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 242 Query: 243 SVEY 246 +V+Y Sbjct: 243 AVDY 246 >gi|145639258|ref|ZP_01794864.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|145271561|gb|EDK11472.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittII] gi|309751137|gb|ADO81121.1| tRNA pseudouridine synthase A [Haemophilus influenzae R2866] Length = 269 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPNKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|221307961|ref|ZP_03589808.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|221312282|ref|ZP_03594087.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317216|ref|ZP_03598510.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321479|ref|ZP_03602773.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. SMY] gi|255767037|ref|NP_388029.2| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis str. 168] gi|321313820|ref|YP_004206107.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] gi|239938721|sp|P70973|TRUA_BACSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225184664|emb|CAB11924.2| pseudouridylate synthase I [Bacillus subtilis subsp. subtilis str. 168] gi|291482520|dbj|BAI83595.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. natto BEST195] gi|320020094|gb|ADV95080.1| tRNA pseudouridine synthase A [Bacillus subtilis BSn5] Length = 247 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+HL+G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ G AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 239 YLWNVYY 245 >gi|257899365|ref|ZP_05679018.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257837277|gb|EEV62351.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 248 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQRMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV ++FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRKVEIVSEEFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD ++ A L+G HDFT+F + +RTI + Sbjct: 119 KPRSPFRRHYASYYPYPLDLGKIQRALPDLLGTHDFTSFCASGSSIEDKVRTIYEAKMEV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + +DR GP A PE Sbjct: 179 NETKDELLFTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPAIIAKKDRNAAGPTAHPE 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLYEVKY 247 >gi|150015077|ref|YP_001307331.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] gi|189030131|sp|A6LPU5|TRUA_CLOB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149901542|gb|ABR32375.1| tRNA pseudouridine synthase A [Clostridium beijerinckii NCIMB 8052] Length = 244 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++GS + GWQRQ G +IQ IE AIF TGE ++++G+ RTD+GVHA Sbjct: 1 MRNIKLIIEFDGSNFCGWQRQPKGRTIQKVIETAIFKATGEEIMINGSSRTDAGVHAREM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +A+N L + +SI+ V + FHAR+S+ ++Y Y II R Sbjct: 61 VANFLTNSSIPGDKFREAINTRL--PEDVSIIKSEEVSEDFHARYSSKGKTYSYTIINRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+L + LD MR A ++ +GRHDF F S + RTI ++ Sbjct: 119 ERLSLGHQYLYHYKYRLDVNEMRRACEYFIGRHDFRAFMSPGSSIKTTTRTIHDLYIDQN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I+I + A FL+ +R VG+L +G+GK +++ ++ +RK+ G PP GL Sbjct: 179 GNEIKIFITADGFLYNMVRIIVGTLIKIGNGKLEVENIKDIIEEGNRKKAGMCVPPNGLI 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|145633047|ref|ZP_01788779.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] gi|144986273|gb|EDJ92852.1| tRNA pseudouridine synthase A [Haemophilus influenzae 3655] Length = 269 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|145627788|ref|ZP_01783589.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] gi|144979563|gb|EDJ89222.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.1-21] Length = 269 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHEAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|320101703|ref|YP_004177294.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] gi|319748985|gb|ADV60745.1| tRNA pseudouridine synthase A [Isosphaera pallida ATCC 43644] Length = 275 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+R +I+ Y+G+ + GWQRQ ++Q +E A+ +TGE V V +GRTD+GVHAL Sbjct: 1 MLRTLKLILAYDGTEFSGWQRQPGHRTVQEVVESALRPLTGEPVAVTASGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAHF + P + KALNA L + ++ + FHA A + Y Y I Sbjct: 61 QVAHFHTIARHPPEVFLKALNATL--PPDVRVVWAEEAPQSFHATLDAQSKRYRYVIDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AW + + LD M A Q L GRHDF +F + S +RTI V Sbjct: 119 PFADPFLRRTAWHLFRPLDAPRMNRAVQALRGRHDFRSFETNWPNRMSSVRTILDVQVRR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +E+ V A FL+ +RS G+ LVG G T + + L AQDR+ GP APP+GL Sbjct: 179 IDHRVELEVEADGFLYNMVRSIAGTAVLVGLGDRPETFVAEVLHAQDRRLAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLLQVRY 245 >gi|261855761|ref|YP_003263044.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] gi|261836230|gb|ACX95997.1| tRNA pseudouridine synthase A [Halothiobacillus neapolitanus c2] Length = 271 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 102/246 (41%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY+GS Y GWQRQ S+Q +E A+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALTLEYDGSRYHGWQRQSEVDSVQARLETALSRVADSPVDVVCAGRTDAGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + L ISIL+ VD +FHARFSA RSY Y I+ R Sbjct: 61 VVHFDTEAIRPERAWLLGVTQSL--PSDISILSAQFVDPEFHARFSATARSYRYIILNRM 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL +GR LD M A QHL+G HDF++FR+ CQ+ SP+R+I+ +++ Sbjct: 119 TRSALHRGRITWWRGPLDESAMHEAGQHLLGEHDFSSFRAKDCQSVSPVRSIESLNIHRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +FLH +R+ VG+L VG G+ + L LQA+DR G AP +GLY Sbjct: 179 GEYVYMDITANAFLHHMVRNIVGTLLPVGAGERPADSLWDILQAKDRSAAGMTAPADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVGVRY 244 >gi|56697975|ref|YP_168346.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] gi|62901184|sp|Q5LNR0|TRUA_SILPO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56679712|gb|AAV96378.1| tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] Length = 262 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYLGTPFAGWQRQKDLPSVQGAIETALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK ++I + V + +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDLTRDWDPFRLSEALNYHLK-PQPVAITAAARVAEDWHARFSATERQYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + LD M+ AA L+GRHDFTTFRS CQA+SP++T+D V + Sbjct: 120 APATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTTFRSSICQAASPVKTLDELRVEAV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I V ARSFLH Q+RSFVG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 ESFSGPEIRFHVRARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLARVGY 249 >gi|319897314|ref|YP_004135510.1| tRNA pseudouridine synthase a [Haemophilus influenzae F3031] gi|317432819|emb|CBY81184.1| tRNA pseudouridine synthase A [Haemophilus influenzae F3031] Length = 269 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|291614576|ref|YP_003524733.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] gi|291584688|gb|ADE12346.1| tRNA pseudouridine synthase A [Sideroxydans lithotrophicus ES-1] Length = 254 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 142/245 (57%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSGY GWQ Q + +IQ +++ A+ + GE + + AGRTD+GVHAL QV Sbjct: 1 MRIALGIEYDGSGYNGWQSQPDVPNIQDTLQAALSRIAGENISIIAAGRTDTGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L +++L V +FHARFSA RSY Y +I R + Sbjct: 61 VHFDTGIVRPLASWVRGTNALL--PKDVAVLWAHPVADEFHARFSAQARSYQYVLINRPS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ LD E MR+AAQ+L+G HDF+ FRS CQA +P++T+ D+ G Sbjct: 119 RSAVHHGKVGWFHLPLDVEAMRMAAQNLLGEHDFSAFRSSQCQAKTPVKTLAQLDIVQQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I + A +FLH +R+ VG L VG GK+ + + LQ ++RK P P+GLY Sbjct: 179 DIIIFNLTANAFLHHMVRNIVGCLLYVGKGKYPPQWMHELLQGRERKLAAPTFAPDGLYL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 CHITY 243 >gi|134298133|ref|YP_001111629.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] gi|172044244|sp|A4J151|TRUA_DESRM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134050833|gb|ABO48804.1| tRNA pseudouridine synthase A [Desulfotomaculum reducens MI-1] Length = 247 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q Q+ ++IQ ++EKA+ + + V GAGRTD+GVHA Sbjct: 1 MKNIKLTLAYDGTNYHGFQEQRGTGLATIQEALEKALSTIAQTPIQVIGAGRTDAGVHAQ 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F ALN L I ++ V FHARFSA+ ++Y Y I Sbjct: 61 GQVVNFRSEKWPVPAEKAPLALNVLL--PGDIKVVKAEEVPMDFHARFSAVAKTYRYSIY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + + P+ LD M+ A +L+G +DF +F++ IRTI D+ Sbjct: 119 HHRVMSPFHRYYCYHEPRRLDVNAMQEGAAYLLGTYDFKSFQAQGTPVKDTIRTIYRADI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +I + + FL+ +R G+L +G GK D+ K +++++R G APP+ Sbjct: 179 IEDAPVINLYLRGNGFLYNMVRIITGTLLNIGFGKIKPEDMVKIIESKNRTLAGTTAPPQ 238 Query: 238 GLYFDSVEY 246 GL VEY Sbjct: 239 GLCLMEVEY 247 >gi|291618223|ref|YP_003520965.1| TruA [Pantoea ananatis LMG 20103] gi|291153253|gb|ADD77837.1| TruA [Pantoea ananatis LMG 20103] gi|327394617|dbj|BAK12039.1| tRNA pseudouridine synthase A TruA [Pantoea ananatis AJ13355] Length = 267 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ+ S+Q +E+A+ V V V AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQQEVRSVQEKLERALSKVADHPVSVFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V + +NA L D I++ + V FHARFSA R Y Y I ++ Sbjct: 67 VHFETVAQRADAAWTLGVNANL--PDDIAVRWVKAVPDDFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAILGNGVTHFYYPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRHG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNQSESWMAELLAAKDRTLAAATAKAEGLYL 244 Query: 242 DSVEY 246 +V+Y Sbjct: 245 VAVDY 249 >gi|157161806|ref|YP_001459124.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|170019373|ref|YP_001724327.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188492228|ref|ZP_02999498.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194436017|ref|ZP_03068119.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|253772758|ref|YP_003035589.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162327|ref|YP_003045435.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|256021997|ref|ZP_05435862.1| tRNA pseudouridine synthase A [Escherichia sp. 4_1_40B] gi|300948533|ref|ZP_07162627.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|300956414|ref|ZP_07168705.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|301023565|ref|ZP_07187329.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|301647579|ref|ZP_07247376.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|307138983|ref|ZP_07498339.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|312973422|ref|ZP_07787594.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|331642958|ref|ZP_08344093.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|166991162|sp|A8A2I7|TRUA_ECOHS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030133|sp|B1IXM4|TRUA_ECOLC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157067486|gb|ABV06741.1| tRNA pseudouridine synthase A [Escherichia coli HS] gi|169754301|gb|ACA77000.1| tRNA pseudouridine synthase A [Escherichia coli ATCC 8739] gi|188487427|gb|EDU62530.1| tRNA pseudouridine synthase A [Escherichia coli 53638] gi|194424745|gb|EDX40730.1| tRNA pseudouridine synthase A [Escherichia coli 101-1] gi|242377951|emb|CAQ32720.1| tRNA pseudouridine synthase I [Escherichia coli BL21(DE3)] gi|253323802|gb|ACT28404.1| tRNA pseudouridine synthase A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974228|gb|ACT39899.1| tRNA pseudouridine synthase A [Escherichia coli B str. REL606] gi|253978395|gb|ACT44065.1| tRNA pseudouridine synthase A [Escherichia coli BL21(DE3)] gi|299880800|gb|EFI89011.1| tRNA pseudouridine synthase A [Escherichia coli MS 196-1] gi|300316763|gb|EFJ66547.1| tRNA pseudouridine synthase A [Escherichia coli MS 175-1] gi|300451943|gb|EFK15563.1| tRNA pseudouridine synthase A [Escherichia coli MS 116-1] gi|301074269|gb|EFK89075.1| tRNA pseudouridine synthase A [Escherichia coli MS 146-1] gi|309702630|emb|CBJ01959.1| tRNA pseudouridine synthase A [Escherichia coli ETEC H10407] gi|310332017|gb|EFP99252.1| tRNA pseudouridine synthase A [Escherichia coli 1827-70] gi|315615587|gb|EFU96219.1| tRNA pseudouridine synthase A [Escherichia coli 3431] gi|323936608|gb|EGB32895.1| tRNA pseudouridine synthase A [Escherichia coli E1520] gi|323940985|gb|EGB37172.1| tRNA pseudouridine synthase A [Escherichia coli E482] gi|323961391|gb|EGB57002.1| tRNA pseudouridine synthase A [Escherichia coli H489] gi|323973098|gb|EGB68291.1| tRNA pseudouridine synthase A [Escherichia coli TA007] gi|331039756|gb|EGI11976.1| tRNA pseudouridine synthase A [Escherichia coli H736] gi|332344100|gb|AEE57434.1| tRNA pseudouridine synthase TruA [Escherichia coli UMNK88] Length = 270 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|170761533|ref|YP_001788787.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169408522|gb|ACA56933.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQ+QKN ++QG++EK I +T E V + G RTDSGVHA Sbjct: 1 MKNIKLKLEYDGTNYCGWQKQKNEKFITLQGTLEKVISNITKEKVEIIGVSRTDSGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F P L K +N L I +L+ V +FH+RF + ++Y Y ++ Sbjct: 61 GYVCNFFTNTRIPPENLQKVINNNL--PQDIVVLSSEEVSNEFHSRFCSKGKTYEYTVLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P+A+ + + L+ +NM+IA+++ +G HDF+ F++ + +RTI+ F+++ Sbjct: 119 SPQPIAIGRNYIFQFKDKLNIDNMKIASRYFIGTHDFSAFKTKGSSVKTSVRTINEFEID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+ + FL+ +R VG L +G K +E ++++DR++ G P G Sbjct: 179 KKGDFIKFTITGDGFLYNMVRIIVGILIEIGLNKREPEYVEYVIKSKDRRKAGKCVPSSG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLKEVFY 246 >gi|16130253|ref|NP_416821.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|89109138|ref|AP_002918.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. W3110] gi|170081934|ref|YP_001731254.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238901493|ref|YP_002927289.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|123176|sp|P07649|TRUA_ECOLI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; Short=PSU-I; AltName: Full=tRNA-uridine isomerase I gi|229557954|sp|B1X929|TRUA_ECODH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259550387|sp|C4ZVL1|TRUA_ECOBW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149242461|pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242462|pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242463|pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242464|pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242466|pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242467|pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242468|pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242469|pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|149242475|pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna gi|41718|emb|CAA26522.1| unnamed protein product [Escherichia coli K-12] gi|1788657|gb|AAC75378.1| pseudouridylate synthase I [Escherichia coli str. K-12 substr. MG1655] gi|1799711|dbj|BAA16175.1| pseudouridylate synthase I [Escherichia coli str. K12 substr. W3110] gi|169889769|gb|ACB03476.1| tRNA pseudouridine synthase A [Escherichia coli str. K-12 substr. DH10B] gi|238863332|gb|ACR65330.1| pseudouridylate synthase I [Escherichia coli BW2952] gi|260448588|gb|ACX39010.1| tRNA pseudouridine synthase A [Escherichia coli DH1] gi|315136953|dbj|BAJ44112.1| tRNA pseudouridine synthase A [Escherichia coli DH1] Length = 270 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|148828368|ref|YP_001293121.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] gi|166228702|sp|A5UIY2|TRUA_HAEIG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148719610|gb|ABR00738.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittGG] Length = 269 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAIRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|292488882|ref|YP_003531769.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|292900028|ref|YP_003539397.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291199876|emb|CBJ47000.1| tRNA pseudouridine synthase A [Erwinia amylovora ATCC 49946] gi|291554316|emb|CBA21677.1| pseudouridylate synthase I [Erwinia amylovora CFBP1430] gi|312173042|emb|CBX81297.1| pseudouridylate synthase I [Erwinia amylovora ATCC BAA-2158] Length = 271 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH+ QV Sbjct: 11 MKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALTRVADGPIAVFCAGRTDAGVHSTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I R+ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKSVPDDFHARFSATARRYRYVIYNRRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAAGVTHFYHPLDVEKMQSAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + L A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMSELLAAKDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|145641169|ref|ZP_01796749.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|145274006|gb|EDK13872.1| tRNA pseudouridine synthase A [Haemophilus influenzae 22.4-21] Length = 269 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNVIRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|229844824|ref|ZP_04464962.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] gi|229812205|gb|EEP47896.1| tRNA pseudouridine synthase A [Haemophilus influenzae 6P18H1] Length = 269 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA+L D I++ VD +FHARFSAI R Y Y + + Sbjct: 61 VHFETNAVRLEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSAIARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLFGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|52425230|ref|YP_088367.1| tRNA pseudouridine synthase A [Mannheimia succiniciproducens MBEL55E] gi|52307282|gb|AAU37782.1| TruA protein [Mannheimia succiniciproducens MBEL55E] Length = 270 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG YFGWQRQ+ S+Q +EKA+ V E + V AGRTDSGVH QV Sbjct: 8 MKIALGIEYNGKNYFGWQRQEKVHSVQAELEKALSFVANEKIEVFCAGRTDSGVHGTGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ V FHARFSA R Y Y + + Sbjct: 68 VHFETNAIRPEKAWAFGTNANL--PDDIAVRWAKEVPDDFHARFSATARRYRYVLYCNKL 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A + L+G +DF++FR+ CQ+++P R I H +V G Sbjct: 126 RSAILPYGITHTHLDLDEHKMQEAGRFLLGENDFSSFRAAQCQSNTPWRNIHHLNVIRRG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL VG G +E L ++RK P A EGLY Sbjct: 186 NFVIVDIKANAFVHHMVRNIVGSLMEVGCGNQPPEWIEWLLAQKNRKLAAPTAKAEGLYL 245 Query: 242 DSVEY 246 V Y Sbjct: 246 VQVTY 250 >gi|229523210|ref|ZP_04412617.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] gi|229339573|gb|EEO04588.1| tRNA pseudouridine synthase A [Vibrio cholerae TM 11079-80] Length = 264 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQ+ S+Q ++EK++ + V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTHYYGWQRQREVKSVQEALEKSLSKIANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 61 VHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL VG G+ ++ L +DR A GLY Sbjct: 179 RYVVIDIKANAFVHHMVRNITGSLIAVGCGEQKPEWIQWLLAQKDRTLAAATAKAGGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|78221826|ref|YP_383573.1| tRNA pseudouridine synthase A [Geobacter metallireducens GS-15] gi|78193081|gb|ABB30848.1| tRNA pseudouridine synthase [Geobacter metallireducens GS-15] Length = 256 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG S+Q +E+A+ + E V VH +GRTD+GVHA Sbjct: 13 MHTIKLVLEYDGTNYAGWQIQPNGISVQQVVEEALARLLKEPVRVHSSGRTDAGVHARGM 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + LNA L I+++ F+ RF A + Y Y I + Sbjct: 73 VAAFTTAKGLPMRAFSDGLNALL--PPDIAVMEALEAPDGFNPRFDAAGKHYRYTIHRGE 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W ++LD M A H+VG HDF +FR+ C A + +R ID D+ Sbjct: 131 RRSPLCRHYVWHARETLDLAAMEKGASHMVGEHDFASFRTAGCAARTTVRRIDAVDLALE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I V FL +R VG+L VG G+ ++ D+ + + GP APP+GL Sbjct: 191 GDLLHIDVKGSGFLRNMVRIMVGTLVEVGRGRRSADDVALLFRYPGERFAGPTAPPQGLC 250 Query: 241 FDSVEY 246 V Y Sbjct: 251 LMEVYY 256 >gi|52841533|ref|YP_095332.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54297221|ref|YP_123590.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Paris] gi|148358844|ref|YP_001250051.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|296106890|ref|YP_003618590.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] gi|62901237|sp|Q5X5Q4|TRUA_LEGPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901247|sp|Q5ZVY6|TRUA_LEGPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228736|sp|A5IBF5|TRUA_LEGPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52628644|gb|AAU27385.1| tRNA pseudouridine synthase A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53751006|emb|CAH12417.1| tRNA-pseudouridine synthase I [Legionella pneumophila str. Paris] gi|148280617|gb|ABQ54705.1| tRNA pseudouridine synthase A [Legionella pneumophila str. Corby] gi|295648791|gb|ADG24638.1| tRNA pseudouridine synthase A [Legionella pneumophila 2300/99 Alcoy] Length = 262 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++EY+GS Y GWQ Q +IQ ++E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALVVEYDGSQYHGWQAQTGLHTIQQAVEFALSKVADSSISVVCAGRTDTGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ N +L I + + + FHAR+SA+ R Y Y I Sbjct: 61 IHFDCEKDRSIRAWIHGANTFL--PKDICVKWGKEMPENFHARYSAVSRRYRYVIYNGAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +G + LD M+ Q L+G +DFT+FRS+ CQ+++P+R I V G Sbjct: 119 RPGLLRGNVTWQYRQLDHRLMQQGGQCLLGENDFTSFRSVECQSNTPMRNIHQLQVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ + + A +FLH +R+ G L VG GK ++ L A+DRK AP GLY Sbjct: 179 DLVVLDITANAFLHHMVRNIAGVLIAVGSGKHPVGWVKDVLNAKDRKLGAETAPSYGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VQVTY 243 >gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470] Length = 246 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y I++Y+G+ Y GWQ+QK +IQG +EK + +TGE V V GAGRTD+GVH+L Q Sbjct: 1 MNYRCIVQYDGTRYEGWQKQKRTEETIQGKLEKTLRKITGEEVQVIGAGRTDAGVHSLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L W L ALN L + + + FH+RFS + ++Y YRI T Sbjct: 61 VVNFHLKGRWKAEELETALNGDLPDDIALKHMETAEER--FHSRFSTLEKTYRYRIRTST 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ W KSLD E M+ AA L+G +DFT+F S +R I ++ Sbjct: 119 EKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFCGNKKMKKSAVRCISGIEMKEI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I FL +R VG+L VG+GK + + L+++ R++ G APP+GL Sbjct: 179 KGELQIDFTGDGFLQGMVRILVGTLVEVGEGKRKAESIPAILESKSREKAGFTAPPQGLI 238 Query: 241 FDSVEY 246 SV Y Sbjct: 239 LVSVRY 244 >gi|297521911|ref|ZP_06940297.1| tRNA pseudouridine synthase A [Escherichia coli OP50] Length = 259 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 5 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V FHARFSA R Y Y I + Sbjct: 65 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 122 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 123 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 182 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 183 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 242 Query: 243 SVEY 246 +V+Y Sbjct: 243 AVDY 246 >gi|145630935|ref|ZP_01786711.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] gi|144983402|gb|EDJ90878.1| tRNA pseudouridine synthase A [Haemophilus influenzae R3021] Length = 269 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIANEKIDIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVYHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|322418344|ref|YP_004197567.1| tRNA pseudouridine synthase A [Geobacter sp. M18] gi|320124731|gb|ADW12291.1| tRNA pseudouridine synthase A [Geobacter sp. M18] Length = 250 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q +E A+ + GE +H +GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYSGWQVQPNGVTVQAVMEDALSRMLGERTPLHASGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ + V FH RF A + Y Y ++ Sbjct: 61 VACFKTGKTMPLRAFREGLNTLL--PSDIAVREAAEVPLGFHPRFDAQAKHYRYTMLLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + AW I LD E MR A VG HDF FR +C A + +R I ++ Sbjct: 119 LRSPLSRHTAWRIKGKLDLEAMRAACTVFVGEHDFAAFRGANCAAKTTVRRIYSMELVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + FL +R G+L VG G+ + D+ + L+ DR+ G PP+GL Sbjct: 179 DRLLHLDIKGSGFLKNMVRIITGTLVDVGQGRLGAADVARLLKGGDRQNAGMTVPPQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMRVFY 244 >gi|237732351|ref|ZP_04562832.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] gi|226907890|gb|EEH93808.1| tRNA pseudouridine synthase A [Citrobacter sp. 30_2] Length = 270 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 HKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANERINVFCAGRTDAGVHGTGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 70 VHFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V FG Sbjct: 128 RPAVLGKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHIKVERFG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 188 AYVVVDIKANAFVHHMVRNIVGSLMEVGANNQPESWIAELLAARDRTLAAATAKAEGLYL 247 Query: 242 DSVEY 246 +V+Y Sbjct: 248 VAVDY 252 >gi|24378608|ref|NP_720563.1| tRNA pseudouridine synthase A [Streptococcus mutans UA159] gi|38258780|sp|Q8DWH1|TRUA_STRMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24376463|gb|AAN57869.1|AE014860_6 putative tRNA pseudouridine synthase A [Streptococcus mutans UA159] Length = 249 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + + +G+ V +HGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQVRTVQEEIEKTLLRLNSGQAVKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + L + A P +D ++ A + L G HDFT F + + +RTI + Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DDKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAASN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|84503354|ref|ZP_01001423.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] gi|84388264|gb|EAQ01215.1| tRNA pseudouridine synthase A [Oceanicola batsensis HTCC2597] Length = 255 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 110/250 (44%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALQVEYHGAPFAGWQRQADQPSVQGAIEAALARLEPGPHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +L+ ++I + V + +HARFSA+ R Y++R++ R+ Sbjct: 61 VAQCDLEKDWDPFRLSEALNHHLR-PAPVAIRACARVAEDWHARFSALERRYMFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W +P LD E +R A HLVG HDFTTFRS+ CQA SP++T+D + Sbjct: 120 APATHDAGLVWQVPHRLDPEAIRAGAAHLVGHHDFTTFRSVICQAKSPVKTLDEIRIEEH 179 Query: 181 GNLI----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ARSFLH Q+RS VG+L+ VG G+W + + +AL+A+DR CGP+ PP Sbjct: 180 DGFSGPELRFHLRARSFLHNQVRSIVGTLERVGAGRWPPSRVAEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLVGVGY 249 >gi|192361259|ref|YP_001982227.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] gi|190687424|gb|ACE85102.1| tRNA pseudouridine synthase A [Cellvibrio japonicus Ueda107] Length = 299 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q Q NG ++Q S+EKA+ +V E + + AGRTD+GVHA Sbjct: 28 MRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATN 87 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + + L +L DTI I V FHARFSA R+Y Y + Sbjct: 88 QVIHFDTLAQRPLKAWMRGLGPHL--PDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDG 145 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL + + LD MR A L+G HDFT+FR+ CQA SP+R I++ + Sbjct: 146 ASSPALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHLVR 205 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LI + + A +FLH +R+ VG L VG G + + L A+DR G A P GL Sbjct: 206 RGELIVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATAKPNGL 265 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 266 YLVAVDY 272 >gi|157961443|ref|YP_001501477.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] gi|189030144|sp|A8H305|TRUA_SHEPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157846443|gb|ABV86942.1| tRNA pseudouridine synthase A [Shewanella pealeana ATCC 700345] Length = 261 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVHCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAIRKETAWTLGVNVNL--PDNIAVRWVKVVDDEFHARFTATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ+L+G DFT+FR++HCQ+++P R + +V G Sbjct: 119 RPGILRSGVSHYPGDIDESKMHQAAQYLLGEQDFTSFRAVHCQSNTPFRCVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G + +E+ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGLGNQSVEWIEQLLALKDRNKAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|212637986|ref|YP_002314506.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] gi|226708641|sp|B7GJ99|TRUA_ANOFW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212559466|gb|ACJ32521.1| Pseudouridylate synthase I [Anoxybacillus flavithermus WK1] Length = 246 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I Y+G+ + G+Q Q+ ++QG +E+A+ ++ G+ V V+ +GRTD+ VHA Sbjct: 1 MRRIKCTIAYDGTNFAGYQIQQQKRTVQGELERALSIIHKGQFVRVYASGRTDATVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KALNA L D + + S V FHARFS ++ Y YR+ Sbjct: 61 QVIHFDTPLTIPDERWPKALNALL--PDDVIVKEASEVPSSFHARFSVKKKEYRYRVWIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + P + M A ++L+G HDFT+F S + +RTI +V Sbjct: 119 EKNV-FLRHYVYHHPYDVSVPAMNEALRYLIGTHDFTSFCSAKTEVDDKVRTIYEAEVVQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + R+V FL+ +R VG++ VG G+ + +++ L+ ++R G AP GL Sbjct: 178 EGEELIFRLVGNGFLYNMVRIIVGTVLEVGRGERCAEEIKTILEQKNRSVAGKTAPGHGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLWHVSY 244 >gi|157829158|ref|YP_001495400.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933887|ref|YP_001650676.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] gi|166228760|sp|A8GU17|TRUA_RICRS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030139|sp|B0BVL0|TRUA_RICRO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157801639|gb|ABV76892.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908974|gb|ABY73270.1| tRNA pseudouridine synthase A [Rickettsia rickettsii str. Iowa] Length = 245 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ GAGRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-VRPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|260438183|ref|ZP_05791999.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292809373|gb|EFF68578.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 250 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ+Q N +++ + KA + + + + GA RTD+GVH+ V Sbjct: 1 MRVMLRVAYDGTGYSGWQKQPNAITVEEVLCKACKNLFAQDIDIIGASRTDAGVHSYGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD+ + ALN+ L + I ++ V + FH R R++Y Y+I + Sbjct: 61 AVFDVDTRIPAEKISYALNSRL--PEDIRVVESRQVSENFHPRHVECRKTYEYKIWNDKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + + +LD M A ++ +G HDFT+F S+ Q S IR I V Sbjct: 119 ENPLVRYYSHFFYGNLDIGKMNEACRYFIGLHDFTSFCSVGSQVQSKIREIYSISVEKNN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI IRV FL+ +R G+L VG G+ ++ K + ++R+ GP AP GL Sbjct: 179 RLITIRVTGNGFLYNMVRIIAGTLIKVGQGQLEPAEIPKIIDGKNRELAGPTAPARGLAL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 VEINY 243 >gi|170691065|ref|ZP_02882231.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] gi|170144314|gb|EDT12476.1| tRNA pseudouridine synthase A [Burkholderia graminis C4D1M] Length = 270 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGIQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVHTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E V + N +L TIS+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADVSWVRGTNTFL--PKTISVQWAKPMPEAFHARFSAFERTYYYLLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + LD E MR AA HL+G HDF+ FRS CQA +PI+ + D+ Sbjct: 119 VRSPMLAARAGWVHTPLDIEAMRAAAAHLIGEHDFSAFRSSQCQAKTPIKHLHQIDIEQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G + + + L ++DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNLMGCLVYIGKRRRPVEWMAEVLASRDRESAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|152973988|ref|YP_001373505.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022740|gb|ABS20510.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I+ + ++FHAR+ +++ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWGNALNTLL--PDDIVIVQVEKKTEEFHARYGVVKKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P +D + +R A + +G HDFT+F S +RTI D+ Sbjct: 119 KTADVFRRNYVYQYPYPIDIQLIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIDLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L QDR+ G + P GL Sbjct: 179 QGDELVFRFVGNGFLYNMVRIIVGTLLSVGQGKVDPDSIPEILAKQDRRFAGKMVPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|294101662|ref|YP_003553520.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] gi|293616642|gb|ADE56796.1| tRNA pseudouridine synthase A [Aminobacterium colombiense DSM 12261] Length = 271 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY ++ Y+G+ + GWQRQ +S+Q S+E+A+ + + + AGRTD GVH+ QV Sbjct: 1 MRYAAVVSYDGTAFCGWQRQLGVASVQQSLEEALSKLCATSIPIVAAGRTDGGVHSRGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F L W P L A+N YL +T+ I+ + V++ F ARF A+ R Y Y I A Sbjct: 61 ISFSLPSFWEPRRLVLAINFYL--PETVRIMGVFPVEESFSARFCALWREYRYYIWHGPA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 RAW D ++ A ++L G H+F F I +RTI G Sbjct: 119 FPPYLAQRAWWNRWQWDKTAVKKACEYLEGTHNFKAFCPIKECPEDTVRTILRIKYLRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGL 239 +L I V SFL +RS VGSL LVG GK +++ L + +DR G AP GL Sbjct: 179 HLSVITVRGNSFLMNMVRSIVGSLDLVGKGKNDPEWIKELLDDEKKDRTYAGMTAPAHGL 238 Query: 240 YFDSVEYS 247 YF V Y+ Sbjct: 239 YFWKVCYN 246 >gi|225018926|ref|ZP_03708118.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] gi|224948306|gb|EEG29515.1| hypothetical protein CLOSTMETH_02877 [Clostridium methylpentosum DSM 5476] Length = 250 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I YNG+ Y GWQ QKN ++Q ++ A+ + G V G RTD+GVHA Sbjct: 3 MRNLLVKIAYNGAAYHGWQVQKNALTVQEVVQDAVEKLFGRREDVVGCSRTDTGVHANEY 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + ++ + + +N L D +++L + V++ FHAR+ + Y+Y+I + Sbjct: 63 FFNMHTEKDIPCRSVMRGMNTLL--PDDVAVLGCTEVEEDFHARYCCTGKEYIYKIWNAE 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + P LD + + A + +G HDF+ F S +RTI + Sbjct: 121 SRNPFLHRQCLRYPFPLDIQLLNRAMERFLGTHDFSAFCSAGSDVEDRVRTITQAHASRE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + V FL+ +R VG+L V +GK + D+ + ++DR G APP GL+ Sbjct: 181 GDLVTLTVRGDGFLYNMVRILVGTLIEVQEGKLSPDDIPSVIASRDRSRAGKTAPPCGLF 240 Query: 241 FDSVEY 246 + V Y Sbjct: 241 LNRVFY 246 >gi|149189278|ref|ZP_01867564.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] gi|148836837|gb|EDL53788.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1] Length = 267 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ Y+GWQRQ++ SS+Q +EKA+ +V + V V AGRTD+GVH QV Sbjct: 1 MKVALGIEYNGANYYGWQRQRDVSSVQEELEKALSIVANQPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ P +NA L I++ V ++FHARFSA R Y Y I Sbjct: 61 VHFESSVIRKPAAWTMGVNANL--PKDIAVRWAKEVHEEFHARFSATARRYRYVIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M A Q+L+G +DFT+FR++HCQ+ SP R I H +V+ G Sbjct: 119 RPGILSSGISHYHGELDAEKMHQAGQYLLGENDFTSFRAVHCQSRSPWRNIMHLNVSRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +F+H +R+ GSL +VG G + +E LQ +DRK G A EGLY Sbjct: 179 PYVVIDIKANAFVHHMVRNITGSLIVVGKGDQSPEWIEWLLQQKDRKLAGATAKAEGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|49474896|ref|YP_032937.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] gi|51316603|sp|Q6G547|TRUA_BARHE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49237701|emb|CAF26890.1| tRNA pseudouridine synthase A [Bartonella henselae str. Houston-1] Length = 247 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 163/247 (65%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+A+F +G+ + + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELRTIQSALEQALFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISIL-NLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D + W + ALNA+L+ + ++ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFEKNWRTHTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RSPPALNTKRVWWIPKPLNAQAMHEAAQKLVGKHDFTTFRSAHCQAKSPIRTLERLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y VEY Sbjct: 241 YLTKVEY 247 >gi|323529192|ref|YP_004231344.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] gi|323386194|gb|ADX58284.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1001] Length = 270 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+GS + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGSAFCGWQSQPHGNTVQDELERALREFAQTPVQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + + N++L T+S+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADISWVRGTNSFL--PKTVSVQWAKPMPEAFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA + SLD + MR AA HL+G HDF+ FRS CQA +P++ + D+ Sbjct: 119 VRSPMLAARAGWVHASLDIDAMREAAVHLIGEHDFSAFRSSQCQAKTPVKHLYQIDIQQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L+ +DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLEGRDREWAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|167855019|ref|ZP_02477793.1| ribonuclease G [Haemophilus parasuis 29755] gi|167853867|gb|EDS25107.1| ribonuclease G [Haemophilus parasuis 29755] Length = 262 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGRRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD C NA+L + V FHARFSA+ R Y Y I + Sbjct: 61 VHFDTDVNRPMQSWCLGTNAHLPEDIVVKWAIG--VSDDFHARFSALARRYRYVIYNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ SLD E M A Q L+G +DF++FR+ CQ+ +P R + H V+ Sbjct: 119 RSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLIVSRHQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 DYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VEVIY 243 >gi|127513234|ref|YP_001094431.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] gi|166229835|sp|A3QFC4|TRUA_SHELP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126638529|gb|ABO24172.1| tRNA pseudouridine synthase A [Shewanella loihica PV-4] Length = 261 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ S+Q +E+A+ V E + + AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAVRKESAWTLGVNVNL--PDDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ L+G DFT+FR+I CQ+++P R + +V G Sbjct: 119 RPGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G+ + +++ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|82703035|ref|YP_412601.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] gi|82411100|gb|ABB75209.1| tRNA pseudouridine synthase A [Nitrosospira multiformis ATCC 25196] Length = 351 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R M++EY+GS + GWQ Q G+++Q ++E A+ + GE + V AGRTD+GVHA+ QV Sbjct: 57 VRIAMVLEYDGSNFCGWQSQPGGNTVQDAVEAALSEIAGEAIRVVTAGRTDAGVHAIYQV 116 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + NA L I++L S FHAR+ A+ R YLY ++ Sbjct: 117 LHFDTRAERPMNAWVRGANALL--PSGIALLWASPTADDFHARYCALERCYLYLLLNHPV 174 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + R L E+M++ AQ LVG HDF+ FR+ CQA SP+RT+ +V G Sbjct: 175 RPGLHQHRVGWYHHPLRLESMQMGAQMLVGEHDFSAFRAAACQAKSPVRTLTKLEVTRVG 234 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +FLH +R+ VG L VG GK+ + K L+ R E P GLY Sbjct: 235 NMVAFELRANAFLHHMVRNIVGCLVYVGKGKFRPDWIGKLLENGKRSEAAPTFSASGLYL 294 Query: 242 DSVEY 246 V Y Sbjct: 295 AGVAY 299 >gi|186473191|ref|YP_001860533.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] gi|238691329|sp|B2JQE6|TRUA_BURP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|184195523|gb|ACC73487.1| tRNA pseudouridine synthase A [Burkholderia phymatum STM815] Length = 267 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G ++Q +E+A+ + AGRTD+GVH L Q Sbjct: 1 MTRIALGIQYDGAAFCGWQSQPHGKTVQDELERALREFALTPLQTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELDRAEFSWVRGTNAFL--PSTVAVQWAKPMPDAFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + RA I LD + MR AA L+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 119 VRSPMLASRAGWIHTPLDVDAMREAAACLIGEHDFSAFRSSECQSKTPVKHLYQIDIRPQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + L + L +DR P P+GLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPAAWLSEVLHGRDRNRAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|153001275|ref|YP_001366956.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] gi|166229834|sp|A6WQ04|TRUA_SHEB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151365893|gb|ABS08893.1| tRNA pseudouridine synthase A [Shewanella baltica OS185] Length = 261 Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+QG +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQGQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|251799612|ref|YP_003014343.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] gi|247547238|gb|ACT04257.1| tRNA pseudouridine synthase A [Paenibacillus sp. JDR-2] Length = 246 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+G+ + G+Q Q G +IQ IE AI +TGE +++ G+GRTD+GVHA Q Sbjct: 1 MRNIAATVSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F ALN L I IL V + FH+R SA R++Y Y I + Sbjct: 61 VFNFLTESTIPAERWAIALNTRL--PKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + A+ P L+ E M+ LVG HDFT+F SIH +RTI + Sbjct: 119 FPDVFYRRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLERE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + + FL+ IR +G+L VG GK D+ + L+ + R GP A P GL Sbjct: 179 GQMLHMYMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLM 238 Query: 241 FDSVEY 246 VEY Sbjct: 239 LMKVEY 244 >gi|229846251|ref|ZP_04466363.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] gi|229811255|gb|EEP46972.1| tRNA pseudouridine synthase A [Haemophilus influenzae 7P49H1] Length = 269 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNANL--PDDIAVAWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G HDF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGMTHCHLDLDAEKMHQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVIY 243 >gi|74312835|ref|YP_311254.1| tRNA pseudouridine synthase A [Shigella sonnei Ss046] gi|123759585|sp|Q3YZP3|TRUA_SHISS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|73856312|gb|AAZ89019.1| pseudouridylate synthase I [Shigella sonnei Ss046] gi|323168509|gb|EFZ54189.1| tRNA pseudouridine synthase A [Shigella sonnei 53G] Length = 270 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPERWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|85059597|ref|YP_455299.1| tRNA pseudouridine synthase A [Sodalis glossinidius str. 'morsitans'] gi|84780117|dbj|BAE74894.1| pseudouridylate synthase I [Sodalis glossinidius str. 'morsitans'] Length = 271 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V E V V+ AGRTD+GVHA QV Sbjct: 10 MKLALGIEYDGSAYYGWQRQQEVASVQACLERALSTVADETVTVYCAGRTDAGVHATGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +NA L I++ ++ V FHARFSA R Y Y I Sbjct: 70 VHFDTRSRRPDTAWTLGVNANL--PADIAVRWVAPVTDDFHARFSATARRYRYIIYNHPL 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL LD +M A Q L+G +DFT+FR++ CQ+ SP R + H V G Sbjct: 128 RPALLGRGLTHYYHPLDAPSMARAGQCLLGENDFTSFRALQCQSRSPWRNVHHLYVTRQG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + L +DR + G A EGLY Sbjct: 188 RYVVVDIKANAFVHHMVRNIVGSLLEVGCGNRPESWIADLLACRDRTQAGATARAEGLYL 247 Query: 242 DSVEY 246 +V+Y Sbjct: 248 VAVDY 252 >gi|167624561|ref|YP_001674855.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] gi|189030143|sp|B0TKZ4|TRUA_SHEHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167354583|gb|ABZ77196.1| tRNA pseudouridine synthase A [Shewanella halifaxensis HAW-EB4] Length = 261 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ ++Q +EKA+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGSQYFGWQRQAEVDTVQERLEKALSIVANEPIAVQCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD +FHARF+A R Y Y I Q Sbjct: 61 VHFETNAVRKDTAWTLGVNVNL--PDNIAVRWVKVVDDEFHARFTATARRYRYMIYNHQL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + P +D M AAQ+L+G DFT+FR++ CQ+++P R + +V+ G Sbjct: 119 RPGILRSGVSHYPGVIDEAKMHQAAQYLLGEQDFTSFRAVQCQSNTPFRCVHEVNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VGSL VG G +E+ L +DR + A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGSLLEVGLGNQPIEWIEQLLALKDRNKAAATAKPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|13474062|ref|NP_105630.1| tRNA pseudouridine synthase A [Mesorhizobium loti MAFF303099] gi|30913408|sp|Q98D55|TRUA_RHILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14024814|dbj|BAB51416.1| tRNA-pseudouridine synthase [Mesorhizobium loti MAFF303099] Length = 248 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 170/247 (68%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE V + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAVRLRAAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISIL-NLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL + W + A+NA+L+ + + +IV F ARFSA R YLYRI+ R Sbjct: 61 VAHVDLAKPWPGDKVRDAVNAHLQAAGAHVAILKAAIVPDDFDARFSATGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP ALEKG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SP+RT++ DV+ Sbjct: 121 RAPAALEKGKVWWVPKRLDAGAMHEAAKLLLGRHDFTTFRSTQCQANSPVRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG WT +L+ AL+A+DR CG +APP+GL Sbjct: 181 AGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWTEAELKAALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEY 246 + V+Y Sbjct: 241 FLIGVDY 247 >gi|291279383|ref|YP_003496218.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] gi|290754085|dbj|BAI80462.1| tRNA pseudouridine synthase A [Deferribacter desulfuricans SSM1] Length = 244 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++EY+G+ +FGWQRQK+ ++QG IE A+ + + + G+GRTD+GVHA+ Q Sbjct: 1 MYKKKCVVEYDGTYFFGWQRQKDLRTVQGVIEAALSKIYKSSINIVGSGRTDTGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF R + LN+ L + + I ++ VD FHA+ SAI ++Y+Y+I Q Sbjct: 61 VFHFVSERYLENRSVLLGLNSVL--PEDVVIKHVEDVDLSFHAQKSAISKTYIYKIYNYQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + RAW I ++D + + + G DF+ +P+RTI++ Sbjct: 119 IRSALFRNRAWWIRDNIDVDLLNEYLKFFKGEKDFSAMCLKRSVPENPVRTINYIFAKRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FLH +R+ VG++ + + +E+ L+++DRK G APP+GLY Sbjct: 179 GDFINIEINANGFLHNMVRNIVGTVIDLYSDNSSPEKIEEILKSKDRKNAGRTAPPQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKEVFY 244 >gi|40063298|gb|AAR38116.1| tRNA pseudouridine synthase A [uncultured marine bacterium 578] Length = 247 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E A+ LV V V GRTDSGVHA Q Sbjct: 1 MKIALGVEYLGTNFNGWQIQKSGIRTVQEVVESALSLVANHPVRVFCCGRTDSGVHAKEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ N L ++ VD FHARF+A RSY Y+I Sbjct: 61 VIHFETDSNRSNEAWVFGGNVNL--PSDVNFSWAKDVDDDFHARFNAYARSYEYKIHNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L P+SL+ + MR AA L+G HDF++FR CQA SP++T+++ D+ Sbjct: 119 VRSSLNANYYLWEPRSLNIDEMRKAANFLIGEHDFSSFRGRLCQAKSPVKTVEYLDIIES 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +++ A +FLH +R+ VG+L +G G+ + + L+++DR+E GP A P+GLY Sbjct: 179 DDNLIVKIKANAFLHHMVRNIVGTLLKIGRGERDAEWMLSVLESKDRREAGPTAEPQGLY 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FIKAYY 244 >gi|197117301|ref|YP_002137728.1| tRNA pseudouridine synthase A [Geobacter bemidjiensis Bem] gi|238690881|sp|B5EFM8|TRUA_GEOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|197086661|gb|ACH37932.1| tRNA pseudouridines 38,39,40 synthase [Geobacter bemidjiensis Bem] Length = 250 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q +++A+ + GE +HG+GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ V +FH RF A + Y Y I+ Sbjct: 61 VACFKTDKAMPLRAFREGLNCLL--PGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W + LD + MR A VG HDF FR+ +C A + +R I D+ Sbjct: 119 LRSPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGL 239 G L+ + V FL +R G+L VG GK + D+ + LQ DR++ G PP+GL Sbjct: 179 GCLLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLMQVYY 245 >gi|259500923|ref|ZP_05743825.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|302190624|ref|ZP_07266878.1| tRNA pseudouridine synthase A [Lactobacillus iners AB-1] gi|309803645|ref|ZP_07697735.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|309804945|ref|ZP_07699003.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|309806696|ref|ZP_07700691.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|309808529|ref|ZP_07702428.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|312871160|ref|ZP_07731258.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|312872668|ref|ZP_07732733.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|315653995|ref|ZP_07906911.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] gi|259167617|gb|EEW52112.1| tRNA pseudouridine synthase A [Lactobacillus iners DSM 13335] gi|308164243|gb|EFO66500.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 11V1-d] gi|308165705|gb|EFO67930.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 09V1-c] gi|308166876|gb|EFO69060.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 03V1-b] gi|308168357|gb|EFO70476.1| tRNA pseudouridine synthase A [Lactobacillus iners LactinV 01V1-a] gi|311091710|gb|EFQ50089.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2062A-h1] gi|311093174|gb|EFQ51520.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 3008A-a] gi|315488691|gb|EFU78337.1| tRNA pseudouridine synthase A [Lactobacillus iners ATCC 55195] Length = 260 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNAL--MPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLYHVFY 246 >gi|254253654|ref|ZP_04946971.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] gi|124898299|gb|EAY70142.1| Pseudouridylate synthase [Burkholderia dolosa AUO158] Length = 271 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L S + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFLPPSVAVQW--AKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWVHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRDLAAPTFMADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|238651103|ref|YP_002916961.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] gi|259550439|sp|C4K2W2|TRUA_RICPU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238625201|gb|ACR47907.1| tRNA pseudouridine synthase A [Rickettsia peacockii str. Rustic] Length = 245 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-ARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 CPSVIDLNRAWWISSPLDVPAMQQAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKAAY 245 >gi|255654196|ref|ZP_05399605.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-23m63] gi|296449765|ref|ZP_06891534.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296877828|ref|ZP_06901851.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296261363|gb|EFH08189.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296431170|gb|EFH16994.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 243 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+YNG Y GWQ+Q + IQG+IE+AI+ +T E V + G+GRTDSGVHA+ Q Sbjct: 1 MRNIKITIQYNGKNYCGWQKQLDSLGIQGTIERAIYDITKEKVSLIGSGRTDSGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F + ALNA L IS+++ V+ FH+R+SA ++Y Y + + Sbjct: 61 IANFKTNSSISIESIPMALNAKL--PKDISVIDACEVNDDFHSRYSAKGKTYKYLVYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD + M A+ L+G HDF F S +RTI D+ Sbjct: 119 FRNPILSEISYQVKYELDFDKMCSEAKLLLGTHDFKGFMSSGSSVKDTVRTIYDIDIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + FL+ +R VG+L +G G+ +Q++ R CG AP +GL+ Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDIGRGRIN-EPFLDIIQSKTRSRCGHTAPAQGLF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVHY 243 >gi|323703112|ref|ZP_08114766.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] gi|323531889|gb|EGB21774.1| tRNA pseudouridine synthase A [Desulfotomaculum nigrificans DSM 574] Length = 245 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQR + +IQG IE + +TGE + + G+GRTD+GVHAL Sbjct: 1 MRNIKLTIQYDGSRYRGWQRLGDTDVTIQGKIEAVLSRMTGEEIEIFGSGRTDTGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + L YL + I + + V +FHAR++ + YLY+I Sbjct: 61 QVANFKTNSNMSTGEIMDYLYHYL--PEDIVVTRVEEVSDRFHARYNVKSKKYLYKIWNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +P+ L + M+ AA L+G HDF +FR+ + S ++TI D+ Sbjct: 119 KYHDPFRRKFVHHVPEPLQIKAMQKAAAFLIGEHDFASFRASKSKKKSSVKTIYAIDIVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI+I V FLH +R VG+L VG G +++ L +DR GP AP +GL Sbjct: 179 KDPLIKITVHGNGFLHNMVRIIVGTLVEVGLGHMRPEQVKEILSKKDRSAAGPTAPAKGL 238 Query: 240 YFDSVEY 246 Y VEY Sbjct: 239 YLLEVEY 245 >gi|126663837|ref|ZP_01734832.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] gi|126624101|gb|EAZ94794.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BAL38] Length = 248 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG + G+Q Q + SS+Q ++EKA+ + E + + GAGRTDSGVHA + Sbjct: 1 MRYFIEFAYNGKNFHGFQSQPDASSVQETLEKALSTLFREKIAIVGAGRTDSGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ E LN++L S + + V HARF A R+Y Y + T + Sbjct: 61 AHFETELELDSEYWSHKLNSFLPPSIVVYR--IFKVTDNAHARFDASSRTYEYYMHTFKD 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +LD M A L +DF F +H ++ I G Sbjct: 119 AFITDGSWYHSHQLNLD--KMNEACAILFEYNDFECFSKVHTDVNTFNCKISEAHWKQVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG++ +G GK DL +++++R + G P GLY Sbjct: 177 NQLIFTITADRFLRNMVRAIVGTMVNIGLGKIEVADLRTIIESKNRGKAGFSVPAHGLYL 236 Query: 242 DSVEY 246 +V Y Sbjct: 237 VNVRY 241 >gi|325913236|ref|ZP_08175605.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] gi|325477500|gb|EGC80643.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 60-B] Length = 260 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNAL--MPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQKARNTAPASG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLYHVFY 246 >gi|90419798|ref|ZP_01227707.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] gi|90335839|gb|EAS49587.1| tRNA pseudouridine synthase A [Aurantimonas manganoxydans SI85-9A1] Length = 259 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 136/247 (55%), Positives = 166/247 (67%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ Y GWQRQK S Q IE A+ TGE + AGRTD+GVHA Q Sbjct: 1 MPRFKLTIEYDGTPYCGWQRQKTDLSAQEVIETAVEGFTGEAATLFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P + ALNA+L+ ++IL+ V F ARFSA +R YLYRI R+ Sbjct: 61 VAHVDLRRDWEPDTVRDALNAHLR-DAPVAILSAERVADDFDARFSARKRFYLYRIFNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 AP AL GR W + K LD + M AAQ LVG HDF TFRS HCQA +PIRT++ DV Sbjct: 120 APTALLIGRVWWVSKPLDVDAMHAAAQRLVGTHDFDTFRSAHCQAKNPIRTLEQLDVVRG 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +A+SFLH QIRSF GSLKLVG+G W++ DL AL+A+DRK CGP+APP+GL Sbjct: 180 PGEEIHIHAMAQSFLHNQIRSFAGSLKLVGEGHWSAADLVAALEARDRKRCGPVAPPDGL 239 Query: 240 YFDSVEY 246 Y VEY Sbjct: 240 YLTRVEY 246 >gi|194429433|ref|ZP_03061956.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|194412494|gb|EDX28793.1| tRNA pseudouridine synthase A [Escherichia coli B171] gi|195183057|dbj|BAG66617.1| pseudouridylate synthase I [Escherichia coli O111:H-] Length = 270 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|300776045|ref|ZP_07085904.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] gi|300505178|gb|EFK36317.1| tRNA-pseudouridine synthase I [Chryseobacterium gleum ATCC 35910] Length = 250 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 122/244 (50%), Gaps = 4/244 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + YNG YFG+Q Q + S+Q +EKA+ + E + GAGRTD+GVHA + A Sbjct: 9 RYFIEFSYNGKNYFGYQIQPDAISVQEELEKALSTILREEIKTTGAGRTDTGVHAKKIFA 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +E + L + LN++L ISI + V FHARF A R+Y Y I + P Sbjct: 69 HFDTEKE-LDDQLPRRLNSFL--PPDISIKRIFPVKDDFHARFDATYRTYEYYISLEKNP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E +SLD + M A + L DFT+F + + I I + G Sbjct: 126 FTQESA-WQHWKRSLDVDAMNEACKILFEYEDFTSFAKLKTDNKTNICKIYKAEWEQNGA 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ V A FL +R+ VG++ +G GK DL K ++ ++R G AP GLY Sbjct: 185 ELKFTVSANRFLRNMVRAIVGTMVEIGTGKLKPEDLRKVIEDKNRNAAGTSAPGHGLYLV 244 Query: 243 SVEY 246 V Y Sbjct: 245 DVGY 248 >gi|323161584|gb|EFZ47470.1| tRNA pseudouridine synthase A [Escherichia coli E128010] Length = 270 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPECWIAELLAAKDRTLAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|16801808|ref|NP_472076.1| tRNA pseudouridine synthase A [Listeria innocua Clip11262] gi|24212565|sp|Q927P1|TRUA_LISIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|16415283|emb|CAC97973.1| truA [Listeria innocua Clip11262] gi|313616961|gb|EFR89587.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378] Length = 248 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF + + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEAPADFHARFGTVGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M+ A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 I FL+ +R G+L G G+ + D+ KAL A DR++ APP+ Sbjct: 179 EDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|77358715|ref|YP_338281.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|153206765|ref|ZP_01945606.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154705837|ref|YP_001424337.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161830159|ref|YP_001596814.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165918506|ref|ZP_02218592.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212212657|ref|YP_002303593.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212218370|ref|YP_002305157.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] gi|226708643|sp|B6J6W3|TRUA_COXB1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708644|sp|B6J0H0|TRUA_COXB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708645|sp|A9KFZ5|TRUA_COXBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708646|sp|A9ND24|TRUA_COXBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71066705|gb|AAZ22627.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 493] gi|120577128|gb|EAX33752.1| tRNA pseudouridine synthase A [Coxiella burnetii 'MSU Goat Q177'] gi|154355123|gb|ABS76585.1| tRNA pseudouridine synthase A [Coxiella burnetii Dugway 5J108-111] gi|161762026|gb|ABX77668.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 331] gi|165917752|gb|EDR36356.1| tRNA pseudouridine synthase A [Coxiella burnetii RSA 334] gi|212011067|gb|ACJ18448.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuG_Q212] gi|212012632|gb|ACJ20012.1| tRNA pseudouridine synthase A [Coxiella burnetii CbuK_Q154] Length = 261 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+GS Y GWQ Q+ ++QG +EKA+ V V V AGRTD+GVHA Q Sbjct: 1 MARIALGIRYDGSAYHGWQVQEALKTVQGEVEKALSAVANHPVFVTCAGRTDAGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD N+ L ISIL V++ FHAR+SA+ R Y Y + + Sbjct: 61 VAHFDTTAYRSDHAWVFGANSNL--PHDISILWAKAVEEDFHARYSAMARRYRYIVYNHE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + + LD + M+ AQ+L+G HDF++F+ CQ+ +P+R I ++ Sbjct: 119 IRPAILRKAIGWHYRPLDEKRMQAGAQYLIGEHDFSSFQGAGCQSRTPVRKIFQIEIYRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ I V A +FL +R+ G L +G G+ + L+A+DR++ G PP GLY Sbjct: 179 RRMVVIEVQANAFLLHMVRNIAGVLIAIGSGEKHPDWAQTVLKAKDRRQGGVTVPPNGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVNY 244 >gi|15604687|ref|NP_221205.1| tRNA pseudouridine synthase A [Rickettsia prowazekii str. Madrid E] gi|3861382|emb|CAA15281.1| PSEUDOURIDYLATE SYNTHASE I (truA) [Rickettsia prowazekii] Length = 253 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 111/246 (45%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 9 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N + + + N +V FHARFSAI R Y+YRII R Sbjct: 69 VAHFDLSKYLEPYKIIKAINYF-VRPYDVGVWNCELVSNNFHARFSAISRHYIYRIINRT 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 128 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 188 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 247 Query: 241 FDSVEY 246 F EY Sbjct: 248 FIKAEY 253 >gi|51340814|sp|Q814C2|TRUA1_BACCR RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 Length = 247 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWEVNYN 246 >gi|294085062|ref|YP_003551822.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664637|gb|ADE39738.1| Pseudouridylate synthase [Candidatus Puniceispirillum marinum IMCC1322] Length = 254 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 120/247 (48%), Positives = 153/247 (61%), Gaps = 2/247 (0%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY+G+ + GWQRQ NG ++Q +E+A F TGE + V GAGRTDSGVHAL Sbjct: 1 MTRRIFITIEYDGAPFVGWQRQDNGITVQQELEEAAFAFTGEKINVQGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH D+ ++ P + +ALNA+L + + V HARFSAI R YLYRI+ R Sbjct: 61 QVAHLDVPEKFAPNRVMEALNAHLSHTAISVLDAY-EVPDDAHARFSAIGRRYLYRILPR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL+ GR W + LD + M+ A L+GRHDF +FR+ CQA S IRT+D V Sbjct: 120 RQPPALDAGRVWHHKQPLDADAMQAGADMLIGRHDFNSFRAAQCQAESSIRTLDILQVEQ 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + V ARSFLH Q+R+ G+L LVG GKW D++ AL A DR GP APP GL Sbjct: 180 VSAEIHLHVEARSFLHHQVRNIAGTLALVGTGKWQPDDVKAALAAADRSAAGPTAPPHGL 239 Query: 240 YFDSVEY 246 Y V Y Sbjct: 240 YLTDVFY 246 >gi|167767146|ref|ZP_02439199.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|167711121|gb|EDS21700.1| hypothetical protein CLOSS21_01665 [Clostridium sp. SS2/1] gi|291559527|emb|CBL38327.1| pseudouridylate synthase I [butyrate-producing bacterium SSC/2] Length = 248 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVH Sbjct: 1 MKRNIRLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + L YL I I+ +S ++FH+R +A ++YLYRI Sbjct: 61 AYGQVANFHTDCMMSVSEIKNYLTKYL--PSDIGIVEVSEASERFHSRLNAKEKTYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 E+ W P++LD + M AA L+G HDF F SI S +RTI + + Sbjct: 119 AIPGVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I+I FLH +R G+L VG GK D+ KAL++ R + G APP Sbjct: 179 IKKTKKEIQISYTGNGFLHNMVRILTGTLVEVGCGKIKPEDITKALESTKRSDAGITAPP 238 Query: 237 EGLYFDSVEY 246 +GL+ SVEY Sbjct: 239 QGLFLVSVEY 248 >gi|297620615|ref|YP_003708752.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297375916|gb|ADI37746.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +Y +II Y+G+ Y GWQ Q N SIQ +E+ + ++T + GAGRTD+GVHA+ Q Sbjct: 1 MKKYKLIIAYDGTQYSGWQMQPNALSIQEVLEEKLKVLTKTRTSLTGAGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + + P +L +LN + I I+++ V FHAR+SA + Y Y + Sbjct: 61 VAHFKVEAPFNPSLLRLSLNG--LLPKDIRIMDVEEVPLDFHARYSATNKIYYYHLNLGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDV 177 EK +W I SL+ E ++ +L+G H+F+ F + +PIRT+ V Sbjct: 119 VQDPFEKQYSWNITNSLNMELLKKGISYLIGTHNFSAFANEANQGAAKKNPIRTLKRISV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + SFL+ +R+ G+L V GK + +++K L+++DR+ G AP + Sbjct: 179 VPERIGMRLEFEGESFLYKMVRNMTGTLIDVAKGKLSPEEIKKILESKDRRNAGRAAPAK 238 Query: 238 GLYFDSVEY 246 GL+ ++Y Sbjct: 239 GLFLVRIDY 247 >gi|40062661|gb|AAR37582.1| tRNA pseudouridine synthase A [uncultured marine bacterium 313] Length = 245 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ QKNG SIQ ++ AIF + E VVV GAGRTDSGVHAL Q Sbjct: 1 MQRYKIKIEYDGTPFVGWQFQKNGQSIQEVLQNAIFNFSKEKVVVTGAGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ +N ++ + K+FHARF A +R+Y Y II RQ Sbjct: 61 VAHFDLKKKIKKKSFLPGINQHIGNKPVTVLKINK-TSKKFHARFDAKKRTYQYTIINRQ 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL L+K +AW I K LD M+ A+ L+G HDF+TFR+ C A SPI+T+++ + Sbjct: 120 SPLTLQKNKAWHIRKKLDVRAMKKGAKLLLGTHDFSTFRASSCGAKSPIKTMENISIKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I ++ ++RSFL Q+RS VG +K +GDGKW D +K+ +++ R EC P AP GLY Sbjct: 180 KDKITLKFISRSFLQQQVRSMVGCIKYLGDGKWKLEDFKKSFKSKCRLECAPPAPASGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LAKIKY 245 >gi|309809150|ref|ZP_07703023.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] gi|308170595|gb|EFO72615.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 2503V10-D] Length = 260 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNAL--MPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A+DR++ AP G Sbjct: 179 QNGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKDVEDVEKIILAKDRQQARNTAPASG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLYHVFY 246 >gi|290579596|ref|YP_003483988.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] gi|254996495|dbj|BAH87096.1| putative tRNA pseudouridine synthase A [Streptococcus mutans NN2025] Length = 249 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 MIRY II Y+G+ + G+QRQ ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGTNFSGFQRQPQMRTVQEEIEKTLLRLNSGQAVKVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L L+ + D I ++ + V FHAR+ R++Y + + Sbjct: 61 QVIHFDLPQQRDLEKLRFGLDT--QTPDDIDVIQVEQVADDFHARYQKHRKTYEFLVDLG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + L + A P +D ++ A + L G HDFT F + + +RTI + Sbjct: 119 RPKNPLMRHYATHFPYKVDFSVVKAAIKKLRGTHDFTGFTASGTSVENKVRTISRATVEK 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L++ DR GP A Sbjct: 179 DEKTGFLIFTFTGSGFLYKQVRNMVGTLLKIGNGRMPIDQIDRILESGDRSLAGPTAASN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|313906313|ref|ZP_07839656.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313468869|gb|EFR64228.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 271 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 124/254 (48%), Gaps = 10/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ Y G+Q Q NG ++Q + +A+ +TGE + GA RTD+GVHA Sbjct: 4 MKRIMLIIAYDGTNYCGFQVQPNGVTVQELVNRAVSELTGEEIRTIGASRTDAGVHARGN 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD ALN L D I + V FH R++ ++Y YRI+ R+ Sbjct: 64 VVVFDTKARMPGDKYSYALNPRL--PDDIKVQLSREVSPDFHPRYTDTVKTYEYRILNRR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVN 178 P + SLD + M+ AA++L G HDF +F++ +RTI V Sbjct: 122 MPDPTRRLNTLFNYFSLDADRMQAAARYLEGTHDFRSFQASGETNPDKETVRTIYSASVT 181 Query: 179 S------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 +LI R+ FL+ +R G+L +G GK D++K + A+ R GP Sbjct: 182 RGNAADGNEDLITFRITGNGFLYNMVRILAGTLIEIGRGKLEPEDMKKIMDARSRDAAGP 241 Query: 233 LAPPEGLYFDSVEY 246 APP+GL + Y Sbjct: 242 TAPPQGLTLVEIRY 255 >gi|288959244|ref|YP_003449585.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] gi|288911552|dbj|BAI73041.1| tRNA pseudouridine synthase A [Azospirillum sp. B510] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 120/246 (48%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q S+E+A+ ++GE+ VHG+GRTD+GVHAL Q Sbjct: 1 MQRWKLTVEYDGRPFVGWQRQDNGPSVQQSLEEAVRRLSGEVARVHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL + + + L ALN +LK + + ++ + FHAR ++ R+Y+YRI+ R+ Sbjct: 61 VCHFDLEKPFTALKLRDALNFHLKPAPIAVLEVEAV-TEDFHARLTSTGRAYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLALE GRAW + + LD + M AAQ LVG+HDF++FR+ CQA SP++T+D V Sbjct: 120 APLALESGRAWHVTRPLDADAMHAAAQVLVGQHDFSSFRAALCQAKSPVKTLDRLAVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+R+ VG+L+LVG GKWT+ D+ +AL+A DR + GP PP+GLY Sbjct: 180 GDEIRVHAAARSFLHHQVRNMVGTLELVGAGKWTADDVRRALEACDRAKAGPTCPPDGLY 239 Query: 241 FDSVEY 246 F + Y Sbjct: 240 FLAARY 245 >gi|315640131|ref|ZP_07895253.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315484108|gb|EFU74582.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY II Y+G+ + G+QRQ G ++Q +E+ + + + +VVHG+GRTD+ VHAL Q Sbjct: 3 MVRYKAIIAYDGTLFHGFQRQPQGRTVQEELERTLSKMASQPIVVHGSGRTDAHVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +E + A++ + + I++ + IVD+ FHAR+ + Y + + + Sbjct: 63 VIHFDYPKERPLEKMRFAMDT--QTPEDIAVKQVEIVDELFHARYLVQEKVYEFHVQIGK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A P LD + A L+G HDF+ F + +RTI + Sbjct: 121 PRSPFRRHYASYYPYPLDLAKIERALPDLLGTHDFSAFCASGSSVEDKVRTIYEATMVHD 180 Query: 181 GNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 L E FL+ IR VG+L +G+G+ T L K + ++DR GP A PEG Sbjct: 181 EALSELVFTFRGDGFLYKMIRILVGTLLKIGNGRLEETSLPKIIASKDRNCAGPTAHPEG 240 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 241 LYLKEVKY 248 >gi|218230830|ref|YP_002364991.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228950690|ref|ZP_04112824.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077443|ref|ZP_04210092.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|229148551|ref|ZP_04276807.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|229176742|ref|ZP_04304146.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|218158787|gb|ACK58779.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228606785|gb|EEK64202.1| tRNA pseudouridine synthase A [Bacillus cereus 172560W] gi|228634967|gb|EEK91540.1| tRNA pseudouridine synthase A [Bacillus cereus m1550] gi|228705869|gb|EEL58206.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-2] gi|228809041|gb|EEM55526.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 252 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWINALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|329297440|ref|ZP_08254776.1| tRNA pseudouridine synthase A [Plautia stali symbiont] Length = 270 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 8 FKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVANHPVNVFCAGRTDAGVHGTGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N+ L D I++ + V + FHARFSA R Y Y I ++ Sbjct: 68 VHFETTLSRADSAWTLGVNSNL--PDDIAVRWVKAVPETFHARFSATARRYRYVIYNQRL 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 126 RPAILGKGITHFYHPLDAEKMHRAAQALLGENDFTSFRAVQCQSRTPWRNVMHLYVTRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G T + L A+DR A EGLY Sbjct: 186 PYVIVDIKANAFVHYMVRNIVGSLLEIGCGNQPETWMATLLAAKDRTLAAATAKAEGLYL 245 Query: 242 DSVEY 246 +V+Y Sbjct: 246 VAVDY 250 >gi|289435864|ref|YP_003465736.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172108|emb|CBH28654.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 248 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q + ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPDTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKAL--QVMTPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EEDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|30018411|ref|NP_830042.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206972233|ref|ZP_03233180.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228956583|ref|ZP_04118379.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229041047|ref|ZP_04189810.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|229125659|ref|ZP_04254691.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|229142948|ref|ZP_04271389.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|229188427|ref|ZP_04315475.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|296500975|ref|YP_003662675.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|29893951|gb|AAP07243.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206732807|gb|EDZ49982.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|228595101|gb|EEK52872.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10876] gi|228640569|gb|EEK96958.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST24] gi|228657851|gb|EEL13657.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-Cer4] gi|228727344|gb|EEL78538.1| tRNA pseudouridine synthase A [Bacillus cereus AH676] gi|228803148|gb|EEM49970.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322027|gb|ADH04955.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 252 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|145635070|ref|ZP_01790776.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] gi|145267678|gb|EDK07676.1| tRNA pseudouridine synthase A [Haemophilus influenzae PittAA] Length = 269 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EK++ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKSLSHIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ NA+L D I++ VD +FHARFSA R Y Y + + Sbjct: 61 VHFETNAVRPEKAWAFGTNAHL--PDDIAVSWAKQVDDEFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M A Q L+G DF++FR+ CQ+ +P R + H +V+ G Sbjct: 119 RSAILAGGITHCHLDLDAEKMHQAGQCLLGEQDFSSFRAAQCQSHTPWRNVHHLNVSRIG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ ++R+ P A P+GLY Sbjct: 179 KYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVVY 243 >gi|225387194|ref|ZP_03756958.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] gi|225046673|gb|EEG56919.1| hypothetical protein CLOSTASPAR_00946 [Clostridium asparagiforme DSM 15981] Length = 259 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q N +I+ + KA+ + E + V GA RTD+GVHA Sbjct: 7 MRRIRLVVAYDGTNYHGWQYQPNAVTIEEVLNKALTELLREPIAVIGASRTDAGVHAQGN 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C A+N L + I + + V +H R ++Y Y+I+ R+ Sbjct: 67 VAVFDTKNRMAADKICLAVNQRL--PEDIRVQSSEEVATDWHPRKRRCVKTYEYKILNRR 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNS 179 + ++ + LD E MR AA+ ++G HDF +F S Q + +RT+ Sbjct: 125 IEMPDKRLYTYHCYYDLDLEKMRQAAEFILGEHDFKSFCSAKTQVTDTVRTVYDLKLERD 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IR+ FL+ +R G+L G G + + L A+DR++ GP AP +GL Sbjct: 185 QEDVITIRITGSGFLYNMVRIIAGTLLWAGTGLIRPEAVGEILAAEDRRKAGPTAPAKGL 244 Query: 240 YFDSVEY 246 + Y Sbjct: 245 TLIRMHY 251 >gi|24212681|sp|Q9ZCA3|TRUA_RICPR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|292572520|gb|ADE30435.1| tRNA pseudouridine synthase A [Rickettsia prowazekii Rp22] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 111/246 (45%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ + GWQRQ S+Q +E+AI+ + E V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTHFAGWQRQAGVLSVQQILEEAIYKFSSEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + KA+N + + + N +V FHARFSAI R Y+YRII R Sbjct: 61 VAHFDLSKYLEPYKIIKAINYF-VRPYDVGVWNCELVSNNFHARFSAISRHYIYRIINRT 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FRS CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDFNRAWWISSPLDILAMQKAAAYLLGKHDFTSFRSSSCQSKSPIKTLTEINIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L A+DRK GP AP GLY Sbjct: 180 YEEIKLYISAPSFLHYMVRNIVGSLVLVGKNIWQAEQIKNVLDARDRKIAGPTAPAFGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FIKAEY 245 >gi|163790163|ref|ZP_02184597.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159874654|gb|EDP68724.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 279 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 135/247 (54%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQV 61 RY MII+Y+G+ + G+Q Q N ++QG I+KA+ ++T +++HG+GRTDSGVHA QV Sbjct: 5 RYKMIIQYDGTHFAGFQIQPNDRTVQGEIQKALKIMTKGLEIIIHGSGRTDSGVHAKGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +ALN+ +D + + ++IVD FHAR++ + Y YR+ Sbjct: 65 IHFDYPILLPVENMQRALNSL--TTDELFVEKVAIVDTNFHARYNTSGKKYQYRVDLNAI 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ P +D E ++ A + L G HDF++F + + + +RT+ V Sbjct: 123 PNPFKRLYTLHHPYPIDMEKLQNALKDLEGEHDFSSFCASNSGRENKVRTVYEASVVKDI 182 Query: 182 NLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 E FL+ +R FVG+L + +G + ++++ L +DR E GP A P+GL Sbjct: 183 FNNELIFTFSGNGFLYNMVRIFVGTLLQIANGLRPADEIKRLLAVKDRNEAGPTAKPQGL 242 Query: 240 YFDSVEY 246 Y V Y Sbjct: 243 YLMEVYY 249 >gi|229587225|ref|YP_002845726.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] gi|259550437|sp|C3PLZ3|TRUA_RICAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|228022275|gb|ACP53983.1| tRNA pseudouridine synthase A [Rickettsia africae ESF-5] Length = 245 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 148/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-ARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQVEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|307825597|ref|ZP_07655815.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] gi|307733483|gb|EFO04342.1| tRNA pseudouridine synthase A [Methylobacter tundripaludum SV96] Length = 267 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+GSG+ GWQ Q + S+Q +E+A+ V V V AGRTD+GVHAL Q Sbjct: 1 MTRIVLGIEYDGSGFSGWQWQTHQRSVQQVLEQALSKVANHPVTVQCAGRTDTGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N+ L D + I + FHAR+SAI R Y Y I+ R Sbjct: 61 VVHFDAKVERELHTWVLGGNSNL--PDDVRITWVKPAVGDFHARYSAIARFYRYVILNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + +A LD + M AAQHL+G+HDF+TFR+ CQ+ SP R + DV Sbjct: 119 IKSALLRNQATWHHNPLDADKMHRAAQHLIGKHDFSTFRAQGCQSKSPCREMYFIDVYRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + I + A +FLH +R+ G L +G GK + ++ L+ ++RK G APP GLY Sbjct: 179 DDKVIIDISANAFLHHMVRNIAGVLMDIGAGKQDESWTQELLEVKNRKLGGVTAPPYGLY 238 Query: 241 FDSVEY 246 +V Y Sbjct: 239 LGAVYY 244 >gi|300703716|ref|YP_003745318.1| tRNA pseudouridylate synthase i [Ralstonia solanacearum CFBP2957] gi|299071379|emb|CBJ42698.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CFBP2957] Length = 274 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 137/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + D M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGQSLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|315283801|ref|ZP_07871873.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] gi|313612551|gb|EFR86621.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120] Length = 248 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLRVEEVADDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLAKMKLASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + ++ +AL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPEEITEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|240144416|ref|ZP_04743017.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257203524|gb|EEV01809.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] Length = 294 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + K + + GE +VV GA RTDSGVH+L + Sbjct: 48 MRVKMIVAYDGTNYKGWQVQPNGITIEEVLNKNLSNLLGEQIVVSGASRTDSGVHSLGNI 107 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN L + I + V+ +H R+ R++Y YRI+ R Sbjct: 108 AVFDTNTRMPADKIAFALNQRL--PEDIVVQGSCEVEDGWHPRYQNSRKTYEYRILNRTF 165 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E M+ AA +L G HDF +F +I Q + +RTI DV G Sbjct: 166 RMPTRRLDTYFYHYPLDVEKMKKAASYLEGEHDFKSFCAIGAQVKTTVRTIYACDVEKEG 225 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L VG G ++ L +DR GP AP GL Sbjct: 226 DIITIRVTGNGFLYNMVRIIAGTLVQVGGGAIKPEAVKGILAKKDRSAAGPTAPAHGLTM 285 Query: 242 DSVEY 246 +E+ Sbjct: 286 MGIEF 290 >gi|313680524|ref|YP_004058263.1| tRNA pseudouridine synthase a [Oceanithermus profundus DSM 14977] gi|313153239|gb|ADR37090.1| tRNA pseudouridine synthase A [Oceanithermus profundus DSM 14977] Length = 251 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 136/248 (54%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +++EY+G+ + G+Q Q + ++QG +E A+ + G V AGRTDSGVHAL Sbjct: 1 MRRLKLVLEYDGTDFAGFQLQARGERTVQGVLEAALARIPGARPKVTAAGRTDSGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D + +ALNA L + +L V +HAR+SA R YLYR++ R Sbjct: 61 MPVHYDTEDTVPVERVPQALNALL--PPDVRVLEAEEVPPDWHARYSARWRRYLYRVLNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL++ R W +P+ D + AA+ LVG HDF F + + + +R + V + Sbjct: 119 RQPTALDRHRVWWVPQPFDFPAIAAAARTLVGEHDFGAF--ANREKRATVRRLYQAHVEA 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + V F+ Q+R+ VG+L VG G+ D+ + L+ +R E G APP+GL Sbjct: 177 VGGELHLHFVGSGFVRGQVRAMVGTLVEVGLGRRPPEDVARLLENPERSEGGATAPPQGL 236 Query: 240 YFDSVEYS 247 YF + YS Sbjct: 237 YFVAAGYS 244 >gi|237653725|ref|YP_002890039.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] gi|237624972|gb|ACR01662.1| tRNA pseudouridine synthase A [Thauera sp. MZ1T] Length = 265 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G + GWQ Q +G ++Q +E+A+ + GE V H AGRTD+GVHA Q Sbjct: 1 MRRIVLGLEYAGDAFCGWQSQAHGRTVQDVLERALAQIAGEPVRTHCAGRTDTGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + +NA L + + + V FHARF A R Y Y + Sbjct: 61 VAHFDTRAVRPASAWVRGVNALL--PPAVVVRWSTEVGDDFHARFLACERQYRYILHNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ GR +LD E M AAQ LVG HDF++FR+ CQA +P+R + V Sbjct: 119 TRPAMLAGRVGWYHPALDVERMAAAAQCLVGTHDFSSFRAAGCQAKTPVRVMHEARVVRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FLH IR+ VG+L VG G++ + + L+A+DR P P+GLY Sbjct: 179 GEYLLFDFRANGFLHHMIRNLVGALVYVGKGRYPVAWMRELLEARDRARAAPTFSPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LCGVAY 244 >gi|326203861|ref|ZP_08193723.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325985959|gb|EGD46793.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 245 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ QKN ++Q +++KAI + GE V V G RTD GVHA Q Sbjct: 1 MRKIKIIIEYDGTNYHGWQVQKNAKTVQETVQKAISKLLGEGVGVTGCSRTDVGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + A+N L D I I + V ++FHAR+S + Y Y I Sbjct: 61 VAHFLTDSQIPGDKFSYAINNLL--PDDIVIKHSEEVSEEFHARYSTKGKKYRYLIYNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 P A+ + R+ + LD E M+ AA++ +G HDF F++ Q S +R I +V+ Sbjct: 119 HPSAIMRNRSCHVRPVLDIEQMKKAARYFIGEHDFAAFQATGGQVRSTVREIYSMEVSGK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+I I V FL+ +R G+L VG GK +++ + DR + G AP +GL Sbjct: 179 EDNMIYIEVSGNGFLYNMVRIIAGTLIYVGMGKLQESEIPGIIAGLDRTKSGKTAPAQGL 238 Query: 240 YFDSVEY 246 Y + Y Sbjct: 239 YLMEIYY 245 >gi|240143728|ref|ZP_04742329.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|257204287|gb|EEV02572.1| tRNA pseudouridine synthase A [Roseburia intestinalis L1-82] gi|291537295|emb|CBL10407.1| pseudouridylate synthase I [Roseburia intestinalis M50/1] gi|291539242|emb|CBL12353.1| pseudouridylate synthase I [Roseburia intestinalis XB6B4] Length = 251 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y MI++Y+G+ Y GWQ +IQG ++ + + G V V G+GRTD+GVHA Q Sbjct: 1 MANYKMILQYDGTRYRGWQVLPAELTIQGKLQDVLSKMAGYQVEVTGSGRTDAGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F L EW + LN YL + I++ + VD++FH+R+ A+ ++YLYRI T + Sbjct: 61 TANFHLREEWDEDKILFYLNQYL--PEDIAVCEVKRVDERFHSRYQAVEKTYLYRIHTGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E+ + + LD MR AA++L G HDF +F S +RTI + Sbjct: 119 IPEVFERRYVYDYTEPLDVNRMRKAAEYLCGTHDFKSFCGNKKMKKSTVRTISRIQIKEL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I FL +R G+L +GDG+ T D+ + L+A++R+ G AP GL Sbjct: 179 PGEIQIYYTGNGFLQNMVRILTGTLIEIGDGRRTPEDVSEILEAKNRERAGYTAPACGLT 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVIY 244 >gi|283786396|ref|YP_003366261.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] gi|282949850|emb|CBG89473.1| tRNA pseudouridine synthase A [Citrobacter rodentium ICC168] Length = 269 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 10 KIALGVEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +NA L I++ + V + FHARFSA R Y Y I + Sbjct: 70 HFETSALRKDAAWTLGVNANL--PGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLR 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ G Sbjct: 128 PAVLAKGVTHYYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVSRHGA 187 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 188 YVVVDIKANAFVHHMVRNIVGSLMEVGAHHQPESWIAELLAAKDRTLAAATAKAEGLYLV 247 Query: 243 SVEY 246 +V+Y Sbjct: 248 AVDY 251 >gi|312113444|ref|YP_004011040.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] gi|311218573|gb|ADP69941.1| tRNA pseudouridine synthase A [Rhodomicrobium vannielii ATCC 17100] Length = 245 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 129/246 (52%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q NG S+Q + +AI TG + GAGRTD+GVHA Q Sbjct: 1 MPRYKITIEYDGTPFSGWQMQANGRSVQDHLARAIERFTGVRAIPRGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W P + ALN +L+ + IL VD+ F ARFSA R YLYRI+TR+ Sbjct: 61 VAHVDLERRWPPETVRNALNFHLR-PAPMVILACEEVDETFDARFSAKARHYLYRIVTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PLAL++ RAW I LD E M+ A+HL+G HDFTTFR+ CQA SP+RT+D V S Sbjct: 120 SPLALDRDRAWHIGVPLDAEAMQEGARHLLGHHDFTTFRASQCQAKSPLRTLDTLTVRSE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS GSLKLVG+GKW + +AL+A+DR+ CG +AP GLY Sbjct: 180 GESVFIATSARSFLHNQVRSMAGSLKLVGEGKWQPERMREALEARDRRACGSVAPACGLY 239 Query: 241 FDSVEY 246 F +V+Y Sbjct: 240 FMTVDY 245 >gi|218289976|ref|ZP_03494153.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] gi|218239961|gb|EED07148.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius LAA1] Length = 262 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G +VV G+GRTD GVHA QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDIVVEGSGRTDRGVHARAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + L+ L + VD FHARFS +R++Y Y + Sbjct: 65 VHFDLPYGPPADRMVHVLHRRL--PADLLPRQADEVDDGFHARFSVVRKTYRYTLDLAPL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +W +P+ LD M+ AA+HL+G HDFT+F + +R ID + G Sbjct: 123 PSLYWYRFSWHLPEYLDLAAMQEAARHLLGEHDFTSFCAAEAPQRDKVRRIDRVEFRQDG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I FL +R VG+L VG GK + L+A+DR+ G APP GL Sbjct: 183 SRLHIEFEGNGFLQYMVRILVGTLVKVGRGKERPDRIPLILEARDRRLAGETAPPHGLCL 242 Query: 242 DSVEY 246 +VEY Sbjct: 243 WNVEY 247 >gi|326803064|ref|YP_004320882.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] gi|326650503|gb|AEA00686.1| tRNA pseudouridine synthase A [Aerococcus urinae ACS-120-V-Col10a] Length = 264 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 127/248 (51%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY I Y+G+ Y G+Q Q NG SIQ ++EKA+ L+T G+ + V+G+GRTDSGVHAL Q Sbjct: 3 QRYKATIAYDGTPYVGFQVQPNGPSIQAALEKALKLMTKGQEIPVYGSGRTDSGVHALGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E L +ALN+ L D I + + V+K FHAR+ A R++YLY++ Sbjct: 63 VVHFDYPSEIETEGLLRALNSIL--DDAICVKTVEPVEKHFHARYHAQRKAYLYKVSLAP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ P D ++ A L+G H+F +F S + R I + + Sbjct: 121 FVSPFERHYVLHHPYRTDVSRIQAALPALIGAHNFKSFCSTKTDKTVFDREIYRAECQAS 180 Query: 181 GNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ +R VG+ +GDG +L L+ QDR GP A G Sbjct: 181 WDGQTLTFYFEGNGFLYNMVRIIVGTCLQIGDGLRPVENLSDLLRIQDRNAAGPTAKAHG 240 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 241 LYLHHVDY 248 >gi|83748092|ref|ZP_00945121.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|207742812|ref|YP_002259204.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] gi|83725278|gb|EAP72427.1| tRNA pseudouridine synthase A [Ralstonia solanacearum UW551] gi|206594206|emb|CAQ61133.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum IPO1609] Length = 274 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D P + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IVHLDTDLVREPFSWVRGTNAFL--PSTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + + LD M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGEWLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|313606591|gb|EFR83384.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208] Length = 248 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIITYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSDLDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G+HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGKHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|255526613|ref|ZP_05393520.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296187301|ref|ZP_06855697.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509721|gb|EET86054.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296048172|gb|EFG87610.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 247 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++IEY+G+ Y GWQRQ N SIQ +E+AI T V G+ RTD+GVHA V Sbjct: 5 KNIKLVIEYDGTNYCGWQRQDNAESIQQKVEEAIERATKVFSKVTGSSRTDAGVHAEGFV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P +ALN +L + I I+ VDK+FH+RF++I + Y+Y ++T Sbjct: 65 CNFFTESSIPPENFKEALNVFL--PEDIVIIESKEVDKEFHSRFNSIGKKYVYTVLTGSH 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + + K+L+ M+ AA++ +G HDF+ F+ + IRTI +++ G Sbjct: 123 RPAIRRNYVYYFNKNLNIGQMKEAAKYFLGTHDFSAFKKSGSSVKTSIRTIKELNIDIDG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I+ ++ FL+ +R VG+L VG ++ D++K + +++R G AP GL Sbjct: 183 NYIKFSIIGDGFLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGKSAPACGLTL 242 Query: 242 DSVEY 246 + V Y Sbjct: 243 EKVFY 247 >gi|319760619|ref|YP_004124557.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] gi|318039333|gb|ADV33883.1| tRNA pseudouridine synthase A [Candidatus Blochmannia vafer str. BVAF] Length = 255 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 140/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y GWQ+QKNG S+Q +E A+ +VT E V V AGRTDSGVHAL Q Sbjct: 1 MQKIALGIEYDGSRYCGWQKQKNGISVQDCVENALNIVTAESVSVFCAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ ++ +N YL +I I +S++ + FHARFSA+ R Y Y I + Sbjct: 61 VVHFETDVKYSKSAWTFGVNRYL--PRSICIRWVSLMKQDFHARFSAVSRRYYYYIYNDK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + W K LD M AAQ+L+G +DF+ FRS CQ+ S R + H V Sbjct: 119 IRSAILFQKTWHYTKLLDVCKMSRAAQYLLGENDFSAFRSAGCQSYSRCRNLYHLRVIRI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A SFL+ +R+ VGSL VG G + + + L++ R G AP +GLY Sbjct: 179 GQCVIIDIQANSFLYRMVRNIVGSLVEVGCGNRPAIWILELLKSCKRSLAGMTAPADGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LAEVKY 244 >gi|253701944|ref|YP_003023133.1| tRNA pseudouridine synthase A [Geobacter sp. M21] gi|259550393|sp|C6E4S9|TRUA_GEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|251776794|gb|ACT19375.1| tRNA pseudouridine synthase A [Geobacter sp. M21] Length = 247 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQ Q NG ++Q ++E+A+ + G +HG+GRTD+GVHA Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEALEEALASMLGGKTALHGSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + LN L I++ V +FH RF A+ + Y Y ++ Sbjct: 61 VACFQTDKGMPLRAFREGLNCLL--PADIAVREACEVPLEFHPRFDALAKHYRYTMLLDD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + AW + LD + MR A VG HDF FR+ +C A + +R I D+ Sbjct: 119 LRSPLSRLTAWRLKGKLDVDAMRSACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPEGL 239 G + + V FL +R G+L VG GK + D+ + L+ DR++ G PP+GL Sbjct: 179 GPFLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLKGSDRQQNSGMTVPPQGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLMQVYY 245 >gi|228919092|ref|ZP_04082471.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840617|gb|EEM85879.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 252 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|149370146|ref|ZP_01889997.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] gi|149356637|gb|EDM45193.1| tRNA pseudouridine synthase A [unidentified eubacterium SCB49] Length = 259 Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 4/244 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + I YNG+ Y GWQ+Q + ++Q IE + V + V GAGRTD+GVHA + Sbjct: 8 RYFLEIAYNGAKYCGWQKQPDAKTVQQEIEYFLSTVLRQDVTTMGAGRTDTGVHARQMFL 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ + N++L IS+LN V HARF+AI R Y Y + + P Sbjct: 68 HFDVSKSISIPNFLYKANSFL--PPDISVLNYYEVLDDHHARFNAIAREYEYYVSVVKDP 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 +++ + D M AA L+ DF +F + + + + + GN Sbjct: 126 FSIDSAY--YLKNFPDINLMNEAASSLLTYSDFQSFSKVRTEVKTFNCNVTKAEWILNGN 183 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ + A FL +RS VG+L VG GK T D + +++R G P GLY Sbjct: 184 MLIFTISADRFLRNMVRSIVGTLLEVGSGKITIEDFHNIIASKNRSNAGISVPAHGLYLT 243 Query: 243 SVEY 246 V Y Sbjct: 244 KVIY 247 >gi|99082224|ref|YP_614378.1| tRNA pseudouridine synthase A [Ruegeria sp. TM1040] gi|122984147|sp|Q1GE00|TRUA_SILST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|99038504|gb|ABF65116.1| Pseudouridylate synthase [Ruegeria sp. TM1040] Length = 259 Score = 187 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 116/250 (46%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK ++I++ ++VD ++HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLEKNWDPFRLSEALNYHLK-PAPVAIVDAALVDDEWHARFSAVERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ++G+ W I LD M+ A L+G HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|207722996|ref|YP_002253419.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] gi|206588185|emb|CAQ18754.1| trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum MolK2] Length = 274 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 136/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALRQFGGVELPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H D + NA+L T+++ V + FHARFSA RR+Y Y +++ Sbjct: 61 IIHLDTDLVREAFSWVRGTNAFL--PSTVAVRWAQAVPEDFHARFSAHRRTYYYALVSGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L G+A + D M+ AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRSPLLGGKAGYVMLPPGESLDVAAMQEAAQVLVGEHDFSSFRAAECQAKSPVKTLYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRRPAAWMAEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101] Length = 248 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + K +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIKYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|85707833|ref|ZP_01038899.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] gi|85689367|gb|EAQ29370.1| tRNA pseudouridine synthase A [Erythrobacter sp. NAP1] Length = 247 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ + G QRQK+G S+Q SIE+A+ +TGE +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFQGLQRQKHGPSVQQSIEEALHRITGEDATLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H DL ++ P L +ALNA+L+ D I+IL +VD+ +HARFS + R Y+Y+I R+ Sbjct: 61 RSHVDLEKDIDPFRLSEALNAHLR-PDPIAILACEVVDEDWHARFSCVGRRYVYKIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L K RAW + LD E M AAQ LVGRHDFTTFRS+HCQA P++T+D +V Sbjct: 120 APLTLAKNRAWQVAHDLDHEAMHRAAQALVGRHDFTTFRSVHCQAKDPVKTLDQLNVERV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG LKLVG G W + +AL A+DR + G APP+GLY Sbjct: 180 GDEIHIHAAARSFLHHQVRSMVGCLKLVGAGSWREEQVAEALAAKDRSKLGLNAPPQGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVEATY 245 >gi|254931132|ref|ZP_05264491.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|293582680|gb|EFF94712.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262] gi|328469771|gb|EGF40688.1| tRNA pseudouridine synthase A [Listeria monocytogenes 220] gi|332313028|gb|EGJ26123.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott A] Length = 248 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRIKASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD M++A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G + + D+ +AL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQDRISPDDISEALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|34581081|ref|ZP_00142561.1| pseudouridylate synthase I [Rickettsia sibirica 246] gi|28262466|gb|EAA25970.1| pseudouridylate synthase I [Rickettsia sibirica 246] Length = 245 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-ARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ S I+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSSIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|322411078|gb|EFY01986.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 249 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + +T G+ V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHERTVQEEIEKTLQKLTGGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDMNKMQEAIKTLVGTHDFTGFTAAGTSVKNKVRTITEATLVQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIHY 247 >gi|319945640|ref|ZP_08019892.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] gi|319748239|gb|EFW00481.1| tRNA pseudouridine synthase A [Streptococcus australis ATCC 700641] Length = 248 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V +HGAGRTD+GVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLMRLNQGNPVTIHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQPRDEEKLRFALDT--QTPEDIDFIRVEQVPDDFHSRYQKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVAKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 178 Query: 180 FGNLI--EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ QIR+ VG+L +G+G+ ++ L+ +DR GP A P Sbjct: 179 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVDQIDLILEKKDRNLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|15893251|ref|NP_360965.1| tRNA pseudouridine synthase A [Rickettsia conorii str. Malish 7] gi|24212567|sp|Q92FZ9|TRUA_RICCN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15620470|gb|AAL03866.1| pseudouridylate synthase I [Rickettsia conorii str. Malish 7] Length = 245 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 107/246 (43%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-ARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISAPLDVPAMQQAAVYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVKTAY 245 >gi|83591242|ref|YP_431251.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] gi|123766692|sp|Q2RFT1|TRUA_MOOTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83574156|gb|ABC20708.1| tRNA pseudouridine synthase A [Moorella thermoacetica ATCC 39073] Length = 246 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 118/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+GS Y GWQ Q +G ++QG + A+ +TGE + AGRTD+GVHA Sbjct: 1 MPCLKITLAYDGSNYAGWQVQPEAHGPTVQGEVAAALKRLTGEEITPVAAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F ALN+ L I+ L V FHAR+ A R+ Y Y I Sbjct: 61 GQVISFSTRARIPVERWPLALNSVL--PADIAALEAVEVAPDFHARYCAKRKWYRYTIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P + +W + + LD M AA +L G HDF +F + R + V+ Sbjct: 119 NRVPDVFCRRYSWHLRQPLDVIAMARAAAYLQGCHDFRSFCAAGSPVRHFERQVQQASVS 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V+A FL+ +R VG+L +G + + L A+ R++ GP AP G Sbjct: 179 QNGPFIYFDVIADGFLYHMVRIMVGTLVEIGRRRLVPEAIPAILAARSREKAGPTAPARG 238 Query: 239 LYFDSVEY 246 L + VEY Sbjct: 239 LCLERVEY 246 >gi|307726601|ref|YP_003909814.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] gi|307587126|gb|ADN60523.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1003] Length = 270 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++Y+G+ + GWQ Q +G+++Q +E+A+ V AGRTD+GVH L Q Sbjct: 1 MKRIALGVQYDGTAFCGWQSQPHGNTVQDELERALREFAQTPVHTVVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E V + N++L TIS+ + + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELERADVSWVRGTNSFL--PKTISVQWAKPMPEAFHARFSAFERTYYYVLYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + +LD + M AA HL+G HDF+ FRS CQ+ +P++ + D+ Sbjct: 119 VRSPMLAGRAGWVHAALDIDAMHAAAAHLIGEHDFSAFRSSQCQSKTPVKHLYQIDIQQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R A +FLH +R+ +G L +G G+ + + L +DR+ P P+GLY Sbjct: 179 GDFVHFRFRANAFLHHMVRNVMGCLVYIGKGRRPVQWMAEVLAGRDREWAAPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAQVGY 244 >gi|121602227|ref|YP_989569.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] gi|166228679|sp|A1UUB6|TRUA_BARBK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120614404|gb|ABM45005.1| tRNA pseudouridine synthase A [Bartonella bacilliformis KC583] Length = 247 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 122/247 (49%), Positives = 162/247 (65%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ ++QG++E+AIF +G+ + + AGRTD+GVHA Q Sbjct: 1 MARFKLTLEYDGSNYAGWQRQAELRTVQGAVEQAIFHFSGQQLTITTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITR 119 VAH D ++W + ALNA+L+ + F AR SA++R YL++I+ R Sbjct: 61 VAHVDFEKDWHVNTIHNALNAHLRQQGDNIAILNVENIPDSFDARLSAVKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL R W +P+ L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 RAPPALNAKRVWWLPRPLNADAMHKAAQKLVGKHDFTTFRSAHCQAKSPIRTLECLDVQR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE+AL A+DR CG +APP GL Sbjct: 181 EGEEIFLYARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|118602946|ref|YP_904161.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567885|gb|ABL02690.1| tRNA pseudouridine synthase A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 247 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + + Y G+ + GWQ Q N ++Q +E+A+ V V V +GRTD+GVHA Q Sbjct: 1 MKIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + + NA L ++ + V+ FHARFSAI R Y Y+I + Sbjct: 61 VIHFETNIKRENKVWLFGGNANL--PSDVNFTWVKHVNDNFHARFSAIARQYNYKIHNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + K LD M A+++L+G+H+F+ FR CQA S I+TI+ +N Sbjct: 119 VRCSIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKC 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VG+L VG G+ + +++ L + RK+ P AP GLY Sbjct: 179 DDNILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLY 238 Query: 241 FDSVEYS 247 F YS Sbjct: 239 FIKAFYS 245 >gi|229083462|ref|ZP_04215810.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] gi|228699895|gb|EEL52532.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-44] Length = 252 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGENVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLTLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A +L+G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYLIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + + L Q+RK G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLDVGQGKLDADSIPEILAKQNRKFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|319780351|ref|YP_004139827.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166239|gb|ADV09777.1| tRNA pseudouridine synthase A [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 129/247 (52%), Positives = 173/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+GS + GWQ Q + S+Q +IE+AI GE + + AGRTD+GVHA Q Sbjct: 1 MPRFRLDIEYDGSLFAGWQHQADQPSVQQAIEQAIEKFCGEAIRLRAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLS-IVDKQFHARFSAIRRSYLYRIITR 119 VAH DLV+ W + A+NA+L+ + + + +V F ARFSAI R YLYRI+ R Sbjct: 61 VAHVDLVKAWPSDKVRDAVNAHLQAAGARIAILKATVVSDSFDARFSAIGRHYLYRILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +AP AL+KG+ W +PK LD M AA+ L+GRHDFTTFRS CQA+SPIRT++ DV+ Sbjct: 121 RAPAALDKGKVWWVPKRLDAGAMHEAAKVLLGRHDFTTFRSTQCQANSPIRTLERLDVSR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++IE+R ARSFLH Q+RS VGSLK VGDG W++ DL+ AL+A+DR CG +APP+GL Sbjct: 181 QGDMIEVRASARSFLHNQVRSMVGSLKRVGDGGWSAADLKTALEARDRAACGQVAPPDGL 240 Query: 240 YFDSVEY 246 + V+Y Sbjct: 241 FLTGVDY 247 >gi|313622273|gb|EFR92777.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023] Length = 248 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG+FG+Q Q N ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFFGYQVQPNTRTVQAEIEKALEKMHKGKSVRITASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF I + Y Y I Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEAQADFHARFGTIGKEYRYVIKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD E M+ A++ L+G HDFT+F S + S +RT+ D Sbjct: 119 KIFDPFSRNFALHYPYELDIEKMKQASERLIGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 I FL+ +R G+L G G+ + D+ KAL A DR++ APP+ Sbjct: 179 EDAETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLAHDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|299820989|ref|ZP_07052878.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] gi|299818010|gb|EFI85245.1| tRNA-pseudouridine synthase I [Listeria grayi DSM 20601] Length = 247 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+GSG+ G+Q Q + ++Q +E+A+ + GE V V +GRTD+GVHA Sbjct: 1 MPRYKVILAYDGSGFSGYQVQPHKRTVQSELEEALLKMHKGEFVRVTASGRTDTGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +AL I I ++ V FHAR+ + + Y Y I Sbjct: 61 QVIHFDSPLQIPNEKFQRALQRM--TPFDIGIHSVEQVPDDFHARYGTVGKEYRYVIKNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A P L E M+ A+Q L+G HDFT+F S + S +RTI + Sbjct: 119 TDYDPFSRNFALHYPYPLSIEKMQEASQILIGEHDFTSFCSARTEQDSKVRTIYSIEFLK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPEG 238 I I FL+ +R G+L +G G+ T+ LEKALQA+DR + AP +G Sbjct: 179 EKETITICYRGDGFLYNMVRILTGALLDIGQGRMTAETLEKALQAKDRTKLPSVTAPAQG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWEVAY 246 >gi|224825086|ref|ZP_03698192.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] gi|224602757|gb|EEG08934.1| tRNA pseudouridine synthase A [Lutiella nitroferrum 2002] Length = 262 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G+++Q + A+ + + AGRTD+GVHAL QV Sbjct: 1 MRVALGVEYDGRAFAGWQSQPHGNTVQDKLNLALSHIACAPINTVAAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ E + +N++L I+++ VD++FHARFSA RSY Y ++T Sbjct: 61 VHFDVEVERPENAWVRGVNSHL--PADIAVVWAKQVDEEFHARFSAFSRSYSYFLLTHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L G+ + LD E MR AA HL+GRHDF++FR+ CQA SP++ + D++ Sbjct: 119 RSCLLAGKVGWYHQPLDVEAMREAAAHLLGRHDFSSFRAAECQAKSPVKHLQRLDIHEAD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I ++A +FLH +R+ VG+L VG G + D+ L A+DR+ P P+GLY Sbjct: 179 GFIRFDLLADAFLHHMVRNIVGALVYVGKGTLSPEDMVDLLSARDRRHAPPTFMPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|108758714|ref|YP_633269.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|30913405|sp|Q93NE2|TRUA_MYXXA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14517923|gb|AAK64428.1|AF377337_4 pseudouridine synthase TruA [Myxococcus xanthus] gi|108462594|gb|ABF87779.1| tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 265 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 121/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + +EY G+ Y GWQ Q NG SIQ +E + + G V V AGRTD+GVHA Q Sbjct: 1 MPRLKLTLEYEGTRYVGWQVQPNGPSIQSVLESGLERLLGARVSVASAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD R LN L + D R + + Y YR+ R+ Sbjct: 61 VACFDSPRVLPMKAYVMGLNGLLPPDVAVVDAVEVAEDFD--PRRWSRGKRYRYRVSNRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W + LD E MR AA HL+GRHDF+ FR+ CQA +R I V Sbjct: 119 TRSPLRRMTHWEVFAPLDVEAMRQAAAHLLGRHDFSAFRAADCQAKHAVREIRSLAVEGT 178 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 VV +FL +R+ G+L VG G+ ++ + + L +Q+RK GP APP+GL Sbjct: 179 SGDAVSFVVEGTAFLKHMVRNLAGTLVEVGKGRRPASWVAEVLASQERKRAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 VLEEVFY 245 >gi|85703371|ref|ZP_01034475.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] gi|85672299|gb|EAQ27156.1| tRNA pseudouridine synthase A [Roseovarius sp. 217] Length = 257 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQVDHPSVQGAIEAALGRIEPGPHTIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W L +ALN +LK ++I + V + +HARFSA R YL+RI++R+ Sbjct: 61 VAHCDLPRDWGTFRLSEALNYHLK-PLPVAITGCARVPEDWHARFSATERQYLFRILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP+ L++GR W + LD + MR A HL+G HDFTTFRS CQA+SPI+T+D +++ Sbjct: 120 APVTLDQGRVWHVRPMLDIDAMRAGAAHLIGTHDFTTFRSTICQAASPIKTLDSIEISEH 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I ++ ARSFLH Q+RS VG+L+ VG G W + AL A+DR CGP+ PP Sbjct: 180 STPTGTEIHFQLRARSFLHNQVRSIVGTLERVGAGSWHPDQVRGALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 YGLYLAHVVY 249 >gi|83951133|ref|ZP_00959866.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] gi|83839032|gb|EAP78328.1| tRNA pseudouridine synthase A [Roseovarius nubinhibens ISM] Length = 258 Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 120/250 (48%), Positives = 167/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGAPFAGWQRQKDQPSVQGAIEAALSALEPGAHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK ++I + V + +HARFSA+ R YL+R++TR+ Sbjct: 61 VAHCDLRRDWDPFRLSEALNYHLK-PAPVAITACAPVAEDWHARFSALERRYLFRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W IP LD + M+ A +HLVGRHDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWQIPHRLDTDAMQTACRHLVGRHDFTTFRSSICQAASPVKTLDELTITEH 179 Query: 181 GNLIEI----RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + ARSFLH Q+RSFVG+L+ VG G+W+ D++ AL A++R CGP++PP Sbjct: 180 EGVSGWEVRFFLRARSFLHNQVRSFVGTLERVGAGRWSPDDVKAALDARNRAACGPVSPP 239 Query: 237 EGLYFDSVEY 246 GLY VEY Sbjct: 240 HGLYLAGVEY 249 >gi|15598310|ref|NP_251804.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAO1] gi|107102663|ref|ZP_01366581.1| hypothetical protein PaerPA_01003728 [Pseudomonas aeruginosa PACS2] gi|218890685|ref|YP_002439549.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa LESB58] gi|254236084|ref|ZP_04929407.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|254241809|ref|ZP_04935131.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|296388384|ref|ZP_06877859.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PAb1] gi|313108437|ref|ZP_07794441.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] gi|8134770|sp|O87016|TRUA_PSEAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9949225|gb|AAG06502.1|AE004735_9 tRNA-pseudouridine synthase I [Pseudomonas aeruginosa PAO1] gi|3237313|gb|AAC23941.1| HisT [Pseudomonas aeruginosa PAO1] gi|126168015|gb|EAZ53526.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa C3719] gi|126195187|gb|EAZ59250.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 2192] gi|218770908|emb|CAW26673.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa LESB58] gi|310880943|gb|EFQ39537.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa 39016] Length = 285 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 130/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEY 246 VEY Sbjct: 257 VRVEY 261 >gi|85859802|ref|YP_462004.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85722893|gb|ABC77836.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 259 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 139/249 (55%), Gaps = 5/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R +++EY+G+ Y GWQRQ N +IQ +E++I +T E V++HG+GRTD+GVHAL Sbjct: 13 MTRRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHAL 72 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F L + LN+ L I I VD++FH+R+SA +SYLYRI+ Sbjct: 73 NQVANFRTSSRIPAANLLRGLNSLL--PGDIVIRETEDVDEEFHSRYSAKSKSYLYRILN 130 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L++ AW I LD E M A L G+HDFT+F + S +RTI ++ Sbjct: 131 SPVRSPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIE 190 Query: 179 SFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + V A FL +R+ VG+L +G G+ +S + L+A+DR G APP+ Sbjct: 191 RETEQVITISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQ 250 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 251 GLFLQKVSY 259 >gi|313636153|gb|EFS02014.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRFKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKAL--QVMTPFDISFLIVEEAPADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|167573521|ref|ZP_02366395.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis C6786] Length = 270 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQISIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|229067907|ref|ZP_04201224.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] gi|228715266|gb|EEL67125.1| tRNA pseudouridine synthase A [Bacillus cereus F65185] Length = 252 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTSLSLEEWQWINALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QNDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13] gi|24212547|sp|Q8XLQ0|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|163938150|ref|YP_001643034.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860347|gb|ABY41406.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 252 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q + ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPHHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNSML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|313631806|gb|EFR98984.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + FHARF + + Y Y + Sbjct: 61 QVIHFDSELDISAEKFQKAL--QVMTPFDISFLIVEEALADFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P L+ E M++A++ LVG HDFT+F S + S +RT+ D Sbjct: 119 KVFDPFSRNFALHYPYELNLEKMKLASERLVGEHDFTSFCSARTERDSKVRTLYSIDFYE 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-PLAPPE 237 + I FL+ +R G+L G G+ + D+ KAL A+DR++ APP+ Sbjct: 179 EDDDTLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQKLISKTAPPQ 238 Query: 238 GLYFDSVEY 246 GLY V+Y Sbjct: 239 GLYLWRVDY 247 >gi|260584448|ref|ZP_05852195.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] gi|260157966|gb|EEW93035.1| tRNA pseudouridine synthase A [Granulicatella elegans ATCC 700633] Length = 250 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 RY +I+ Y+G+ Y G+Q Q+NG+SIQ + KA+ +T + V G+GRTDSGVHA Q Sbjct: 3 FRYKVILSYDGTNYVGFQVQENGNSIQAELNKALRKMTKGLYIPVCGSGRTDSGVHANGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + L +ALN+ L D IS + V +FHAR+S + Y+YR+ ++ Sbjct: 63 VIHFDYPTKIEEENLQRALNSLL--PDDISAKQVMAVSDEFHARYSVTGKRYIYRVNIQK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + P ++ +NM A Q ++G HDFT+F S S +R + +V Sbjct: 121 FVNPFSRLYTLHHPYRVNVDNMNEALQAVIGEHDFTSFCSTKTDKESKVRIVTKAEVVEK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + FL+ IR VG+ +GDG +D+ L A DR++ GP APP+GLY Sbjct: 181 DGELVFTFEGNGFLYNMIRILVGTSLQIGDGLRPVSDMRDILVAMDRQKAGPTAPPQGLY 240 Query: 241 FDSVEY 246 D V Y Sbjct: 241 LDEVFY 246 >gi|160875946|ref|YP_001555262.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|189030142|sp|A9KTU7|TRUA_SHEB9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160861468|gb|ABX50002.1| tRNA pseudouridine synthase A [Shewanella baltica OS195] gi|315268141|gb|ADT94994.1| tRNA pseudouridine synthase A [Shewanella baltica OS678] Length = 261 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETNAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|302390990|ref|YP_003826810.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] gi|302203067|gb|ADL11745.1| tRNA pseudouridine synthase A [Acetohalobium arabaticum DSM 5501] Length = 244 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY II Y+G+ Y+G+Q Q + +IQ +E+++ ++T E V AGRTD GVHA Q Sbjct: 1 MRYLKAIIAYDGTNYYGFQHQPDVPTIQDELEESLRILTKEKNKVIVAGRTDRGVHAQNQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + A N L + I I + V+ FHAR+ A + Y YRI+ + Sbjct: 61 VINFKTESPIPLENIRFAWNNCL--PNDILIKEVEDVNADFHARYDAEGKIYEYRILNQP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + I + LD M AA+ L+G +DF++F++ + +RTI +V Sbjct: 119 LPSVFKRNYTYHIKEELDSAAMAEAAECLIGTYDFSSFQASGSNVQTTVRTIQQAEVTQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ R+ FL+ +R VG+L VG G+W + + ++A+DR GP AP +GL Sbjct: 179 DRLVIFRIEGDGFLYNMVRIIVGTLIKVGTGEWEVPRMSRIIEAEDRLAAGPTAPAQGLR 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LIKVKY 244 >gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|38258761|sp|Q890R5|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 133/250 (53%), Gaps = 5/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + +EY+G+ Y GWQ+QK N +IQ SIEKAI T E V + G+ RTD+GVHA Sbjct: 1 MARNVRLKVEYDGTNYSGWQKQKDKNIKTIQSSIEKAIEEATKEEVELIGSSRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L A+F ALN +L + I IL V +FH+RF I ++Y+Y+I+ Sbjct: 61 LAYTANFKTCSTIPGEKFKHALNRFL--PEDIVILESEEVPMEFHSRFDCIGKTYVYKIL 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R +++ + + LD +M A++ L+G HDF F+ + +RTI + ++ Sbjct: 119 NRPLFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDFNAFKKSGGNLKTTVRTITNINI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +++EI V FL+ +R G+L VG + D+ LQ++DR + G AP Sbjct: 179 LKSNDIVEIHVSGDGFLYNMVRIISGTLIEVGLSRRKPEDISIILQSKDRCKAGMCAPAR 238 Query: 238 GLYFDSVEYS 247 GLY + Y+ Sbjct: 239 GLYLKELFYN 248 >gi|328951883|ref|YP_004369217.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] gi|328452207|gb|AEB08036.1| tRNA pseudouridine synthase A [Desulfobacca acetoxidans DSM 11109] Length = 267 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 C+ +EY+G+ Y GWQRQ N +IQ +E + +TG+++ +H +GRTD+GVHAL QVAH Sbjct: 25 ICLTLEYDGTAYHGWQRQANALTIQEVVETCLARLTGQVIRLHSSGRTDAGVHALGQVAH 84 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + LN+ L ++IL + FHAR+SA ++Y YRI+ R Sbjct: 85 FLTTSSLPLSAFREGLNSLL--PRDLAILKVCDAPAGFHARYSATAKTYEYRILNRPVRS 142 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + W + + LD +R AA +++G DF F++ + R + Sbjct: 143 PVHCNYCWWLARPLDQGLLRQAAGYILGEQDFAAFQASGGSVKTTTRKVMAASWEEKPGG 202 Query: 184 I-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ A FL +R+ VG++ VG GK + DL++ L A+DR++ GP AP GLY Sbjct: 203 WRIFQITANGFLRGMVRALVGTMVEVGWGKRSPGDLKRLLAARDRRQAGPTAPAAGLYLV 262 Query: 243 SVEY 246 V Y Sbjct: 263 EVRY 266 >gi|270291103|ref|ZP_06197326.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304385383|ref|ZP_07367728.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] gi|270280499|gb|EFA26334.1| tRNA pseudouridine synthase A [Pediococcus acidilactici 7_4] gi|304328590|gb|EFL95811.1| tRNA pseudouridine synthase A [Pediococcus acidilactici DSM 20284] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +RY + + Y+G+ + G+Q Q N +++G +++A+ + + + G+GRTD+GVHA Sbjct: 1 MRYKITMAYDGTNFAGFQAQPNQRTVEGVLKRAVNKIAKNPQPEIPIFGSGRTDAGVHAF 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL E + ALN+ L + + IVD+ FHARF+ + Y YR+ Sbjct: 61 GQVVHFDLPIEMTANNMLHALNSIL--PLDTQVKKVEIVDEDFHARFTTHGKRYQYRMAL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + E ++ A + L G HDF++F + A + +RTI Sbjct: 119 GEFVDPFKRNYTGHWKFPISIELIQQAIKDLEGTHDFSSFVASGSTAKNHVRTIYEAKAW 178 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 E FL+ +R V L +G + D+ + L +DR + AP Sbjct: 179 KDEAQNEIIFEFYGNGFLYNMVRIMVAVLVEIGSKRRPVDDIPRLLAVKDRNQARGTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V+Y Sbjct: 239 SGLYLKEVDY 248 >gi|163738320|ref|ZP_02145735.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] gi|161388241|gb|EDQ12595.1| Pseudouridylate synthase [Phaeobacter gallaeciensis BS107] Length = 257 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK ++I++ + + +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLK-PAPVAIVDCARAEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD +M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGSMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|71892269|ref|YP_278003.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123775274|sp|Q492H3|TRUA_BLOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71796375|gb|AAZ41126.1| tRNA pseudouridine synthase A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 261 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y GWQRQ++ SIQ IE AI +T E V V AGRTDSGVHAL Q Sbjct: 1 MQKLALGIEYDGSWYCGWQRQRDAPSIQSYIENAIKKITSESVTVFCAGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N YL +I + +V+K FHARFSAI R Y Y I Sbjct: 61 VVHFETYSRRSKSAWTLGMNRYL--PSSICVRWARLVNKDFHARFSAISRRYCYIINNNC 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + W K LD M AAQ+L+G +DF++FR+ CQ+ S R + H + Sbjct: 119 IRSALLFRKTWHYKKYLDINKMCDAAQYLLGENDFSSFRAAGCQSYSARRKLYHIRIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A SF++ +R+ VGSL VG G+ + + L+ +R G AP GLY Sbjct: 179 GQCIVIDIKANSFMYRMVRNIVGSLVKVGCGEQPEKWIAELLENCNRSLAGVTAPASGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVEVKY 244 >gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str. JGS1721] Length = 248 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I I + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRITEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|158520483|ref|YP_001528353.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] gi|158509309|gb|ABW66276.1| tRNA pseudouridine synthase A [Desulfococcus oleovorans Hxd3] Length = 252 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +IIEY+G+ + GWQ QK+ ++QG I A+ +TG+ V V G+GRTD+GVHA+ QV Sbjct: 3 KNFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F P L KALN L I V FHAR+SA ++Y YRI+ R Sbjct: 63 ASFICDTRLEPGTLQKALNGILAKDIVIHDC--REVSLNFHARYSAKSKTYRYRILNRNL 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 P AL +G AW I K LD M A H++GRHDF++F +S +R + N Sbjct: 121 PAALYRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK T + L A+DR G AP GL+ Sbjct: 181 DGYLAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVRVNY 246 >gi|219870357|ref|YP_002474732.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] gi|254789638|sp|B8F382|TRUA_HAEPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219690561|gb|ACL31784.1| tRNA pseudouridine synthase A [Haemophilus parasuis SH0165] Length = 262 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G Y GWQRQ+ S+Q +E+A+ ++ V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGCRYCGWQRQQYVDSVQQRLEEALSVIANSSCEVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD C NA+L + V FHARFSA+ R Y Y I + Sbjct: 61 VHFDTDVNRPMQSWCLGTNAHLPEDIVVKWAIG--VSDDFHARFSALARRYRYVIYNNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ SLD E M A Q L+G +DF++FR+ CQ+ +P R + H V+ Sbjct: 119 RSAILPKGISHYHYSLDHEKMHEAGQFLLGENDFSSFRAAKCQSHTPWRNVHHLIVSRHQ 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A EGLY Sbjct: 179 DYIILDIQANAFVHHMVRNIVGSLIEVGRGDKPVEWIKWLLEKRDRTLAAPTAKAEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VEVIY 243 >gi|218781331|ref|YP_002432649.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] gi|218762715|gb|ACL05181.1| tRNA pseudouridine synthase A [Desulfatibacillum alkenivorans AK-01] Length = 245 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +I+EY+G+ Y GWQRQ + +IQ +E A+ +T + VV+GAGRTDSGVHAL Sbjct: 1 MKRNFKLILEYDGTHYHGWQRQPHDLTIQEVLEGALEKITRQKCVVYGAGRTDSGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + KALN+ L I ++ FHAR SA+ + Y Y I Sbjct: 61 YVANFRCNTHLDAGVFVKALNSTL--PKDIVCKESTLAPDGFHARKSAVSKIYEYHITNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A+ + AW + + LD E M AA+ +G HDF+ F ++ +R I + S Sbjct: 119 PTPPAVCRQYAWHVRRRLDKEAMTRAAKLFLGSHDFSAFEGAGSPKATSVRNIMQSHIQS 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + N I RV A FL +R+ VG+L +G GK + L + DR + GP APPEGL Sbjct: 179 WENHIIYRVEANGFLRYMVRNIVGTLVYIGMGKIPPEAVMDILASGDRGQAGPTAPPEGL 238 Query: 240 YFDSVEY 246 + V+Y Sbjct: 239 FMMCVKY 245 >gi|170749553|ref|YP_001755813.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] gi|238688894|sp|B1M6N9|TRUA_METRJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170656075|gb|ACB25130.1| tRNA pseudouridine synthase A [Methylobacterium radiotolerans JCM 2831] Length = 253 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+GS + GWQRQ + ++QG+IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGSPFCGWQRQADDPTVQGAIEAAVTRFSGENARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAETVPDSFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 +P AL + W +P LD + M AAQ LVGRHDF+ FR+ CQA+SPIRT++ D Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHDAAQRLVGRHDFSAFRAAECQANSPIRTLEQLDVARA 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I + ARSFLH Q+R+ VG+L L G + + D+ + L + D+ CGPLAP Sbjct: 180 PMALHDEIVVATAARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 AGLTFVGVDY 249 >gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124] Length = 248 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVKEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str. JGS1495] gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str. JGS1987] gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239] Length = 248 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|328958698|ref|YP_004376084.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328675022|gb|AEB31068.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 279 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 RY +I++Y+G+ + G+Q Q + ++QG I+KA+ ++T G V++HG+GRTDSGVHA QV Sbjct: 5 RYKLIVQYDGTHFAGFQIQPHDRTVQGEIQKALKIMTKGIEVIIHGSGRTDSGVHAKGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +ALN+ + +++ +FHAR++ + Y YR+ + Sbjct: 65 IHFDYPFVIPAKNMKRALNSLTSDEIFVKDVSIVED--EFHARYNTSGKKYQYRVDLNEI 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ P LD + ++ A + L G HDF +F + H + +RT+ V Sbjct: 123 PDPFKRLYTLHHPYPLDMDKLKNALKDLEGEHDFASFCASHSGRENKVRTVYEASVVKDD 182 Query: 182 NLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 E FL+ +R FVG+L + +G + ++++ L+ +DR E GP A P+GL Sbjct: 183 FNNELLFTFRGNGFLYNMVRIFVGTLLQIANGLRPADEIQRLLEVKDRNEAGPTAKPQGL 242 Query: 240 YFDSVEY 246 Y V Y Sbjct: 243 YLMEVYY 249 >gi|251792608|ref|YP_003007334.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] gi|247534001|gb|ACS97247.1| tRNA pseudouridine synthase A [Aggregatibacter aphrophilus NJ8700] Length = 261 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKQYFGWQKQEKVASVQAELERAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D +++ +VD FHARFSA R Y Y + + Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDVAVRWAKVVDDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V+ G Sbjct: 119 RSAILPQGVTHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G + L L +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQSVEWLAWLLAQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVFY 243 >gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola ACS-139-V-Col8] Length = 256 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 95/252 (37%), Positives = 136/252 (53%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 M RY + +EY+GS Y G+Q Q NG S+Q +++A+ + V+ +GRTDSGVH Sbjct: 1 MPRYAIKVEYDGSNYVGYQVQPNGPSVQAQLDRALLKLAKRPADHPVLTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFDL E P+ L KALN+ L I ++ +S V FHAR+ AI ++YLYRI Sbjct: 61 ALGQVVHFDLDFEIHPLALAKALNSILNK--DIRVVAVSQVAPDFHARYHAIGKAYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 T+ P ++ P D M+ A LVG+HDFT+F S H +RTI Sbjct: 119 DTQAYPDPFKRFYTLHHPYRYDLGKMQRALTDLVGQHDFTSFCSTHSDKEDKVRTIKFAT 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + + FL+ +R VG+L +GDG + ++ L +DR + GP A Sbjct: 179 IEEDLVNQELRFMIAGNGFLYNMVRIIVGTLLQIGDGLKPVDEFKRLLAVKDRNQAGPTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY V+Y Sbjct: 239 DPSGLYLYRVDY 250 >gi|323126548|gb|ADX23845.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 249 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + + +G+ V +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASGQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + D I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPDDIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|298383909|ref|ZP_06993470.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] gi|298263513|gb|EFI06376.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_14] Length = 269 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 119/249 (47%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLL--PPDISVYRVRQVKPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 117 AKYPFNRQYRCRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKM 176 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L VG GK T K ++ QDR + G AP Sbjct: 177 EGEDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGN 236 Query: 238 GLYFDSVEY 246 L+ +VEY Sbjct: 237 ALFLVNVEY 245 >gi|126697674|ref|YP_001086571.1| tRNA pseudouridine synthase 1 [Clostridium difficile 630] gi|254973765|ref|ZP_05270237.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-66c26] gi|255091155|ref|ZP_05320633.1| tRNA pseudouridine synthase 1 [Clostridium difficile CIP 107932] gi|255099266|ref|ZP_05328243.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-63q42] gi|255305049|ref|ZP_05349221.1| tRNA pseudouridine synthase 1 [Clostridium difficile ATCC 43255] gi|255312809|ref|ZP_05354392.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-76w55] gi|255515568|ref|ZP_05383244.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-97b34] gi|255648663|ref|ZP_05395565.1| tRNA pseudouridine synthase 1 [Clostridium difficile QCD-37x79] gi|260681880|ref|YP_003213165.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260685478|ref|YP_003216611.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] gi|306518785|ref|ZP_07405132.1| tRNA pseudouridine synthase ACD [Clostridium difficile QCD-32g58] gi|115249111|emb|CAJ66922.1| transfer RNA pseudouridine synthase A 1 [Clostridium difficile] gi|260208043|emb|CBA60248.1| tRNA pseudouridine synthase 1 [Clostridium difficile CD196] gi|260211494|emb|CBE01638.1| tRNA pseudouridine synthase 1 [Clostridium difficile R20291] Length = 243 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+YNG Y GWQ+Q + IQG+IE+AI+ +T E + G+GRTDSGVHA+ Q Sbjct: 1 MRNIKIKIQYNGKNYCGWQKQPDSLGIQGTIERAIYDITKEETSLIGSGRTDSGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F + + ALNA L IS++ V+ FH+R+SA ++Y Y + + Sbjct: 61 IANFKINSGISIESIPMALNAKL--PKDISVIEACEVNDDFHSRYSAKGKTYKYLVYNSK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD + M A+ L+G HDF F S +RTI D++ Sbjct: 119 FRNPILSEISYQVKYELDFDKMCSEAKSLLGTHDFKGFMSSGSSVKDTVRTIYDIDISKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + FL+ +R VG+L +G G+ +Q++ R CG AP +GL+ Sbjct: 179 DDLITFEISGNGFLYNMVRIIVGTLVDMGRGRIN-EPFLDIIQSKTRSRCGHTAPAQGLF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVHY 243 >gi|317055617|ref|YP_004104084.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] gi|315447886|gb|ADU21450.1| tRNA pseudouridine synthase A [Ruminococcus albus 7] Length = 245 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 124/241 (51%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y+GS Y GWQRQ N ++Q +E AIF +TGE VVV G RTD+GVHA V F Sbjct: 1 MTLAYDGSNYHGWQRQSNALAVQEVVEDAIFKLTGENVVVQGCSRTDAGVHAREYVLSFG 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L + LN++L D IS++ D+ FHAR+ + Y Y + + Sbjct: 61 LELPINCRGIQLGLNSWL--PDDISVIGCEEADEGFHARYMCKGKEYEYIVHNSRIKDPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + A+ +D + AA++ VG HDF F S C +R I FDV G+ + Sbjct: 119 MRNTAFRNTYPIDEVLLDRAAKYFVGEHDFKAFCSTACDKEITVRKIYRFDVRREGDKVI 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 V FL+ +R VG+L + +GK + + + L ++DRK+ G PP+GLY + V Sbjct: 179 FTVAGNGFLYNMVRIMVGTLLFINEGKIAADAIPRILDSKDRKKAGKTVPPQGLYLNKVY 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|322386788|ref|ZP_08060412.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] gi|321269070|gb|EFX52006.1| tRNA pseudouridine synthase A [Streptococcus cristatus ATCC 51100] Length = 249 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + + G+ +V+HGAGRTDSGVHAL Sbjct: 1 MTRYKALISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPIVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V + FHAR+ ++Y + + Sbjct: 61 QVIHFDLPSARDEEKLRFALDT--QTPEDIDVISVEEVTEDFHARYKPHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P L+ M A + L G HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLEIPLMEQAIKALEGTHDFTGFTASGTSVENKVRTITKASLTF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +E+ L+ +DR+ GP A P Sbjct: 179 DAQRNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVNQIERILEEKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|322381099|ref|ZP_08055102.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154675|gb|EFX46946.1| tRNA pseudouridine synthase A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 252 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+G+ Y G+Q Q +G+++Q +E+AI ++TGE V + +GRTD+GVHA Q Sbjct: 1 MRNLRFTLSYDGTSYSGFQTQPDGNTVQDQLEEAIHMLTGEKVKITSSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN+ L I + V FH+R SA R++Y Y I T + Sbjct: 61 VVNFLTSSRIPVDRWCLALNSRL--PRDIVVYEAEEVSLTFHSRKSAKRKTYCYEIRTSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH------ 174 P + P L+ E M+ A +G HDFT+F + + +RTI Sbjct: 119 FPDVFHRAFEVHYPTPLNIEAMKEALSCFIGTHDFTSFCTTRTTMENRVRTIYEARLEYL 178 Query: 175 -FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + LI+I + FL+ +R VG++ VG+GK S+++ L A+DR++ GP Sbjct: 179 PDQDDPARGLIQIYLTGSGFLYNMVRIIVGTILQVGEGKEKSSEIPVILAAKDRRKAGPT 238 Query: 234 APPEGLYFDSVEY 246 A +GL VEY Sbjct: 239 AMAKGLTLWKVEY 251 >gi|163742263|ref|ZP_02149651.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] gi|161384593|gb|EDQ08974.1| tRNA pseudouridine synthase A [Phaeobacter gallaeciensis 2.10] Length = 257 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 115/250 (46%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIENALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+V++W P L +ALN +LK ++I++ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMVKDWDPFRLSEALNFHLK-PSPVAIVDCARVEDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD M+ AA HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGQVWQLNHDLDAGAMQEAANHLIGQHDFTTFRSSICQAASPLKTLDELRIERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L+ VG G W+ D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|89070283|ref|ZP_01157602.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] gi|89044122|gb|EAR50283.1| tRNA pseudouridine synthase A [Oceanicola granulosus HTCC2516] Length = 257 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 115/251 (45%), Positives = 156/251 (62%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ +++QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGGPYAGWQRQDGPATVQGAIEAALARLEPGPHTIAAAGRTDAGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL + W P L +ALN +LK I+I+ + V +HARFSA R YL+R++ R+ Sbjct: 61 VAQADLAKAWEPFRLAEALNYHLK-PAPIAIVACARVADDWHARFSANERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-----F 175 APL E+G+ W + + LD M+ A LVG HDFTTFRS CQA SP++T+D Sbjct: 120 APLPFERGQVWKVNQPLDAAAMQAGADLLVGHHDFTTFRSSICQADSPVKTLDELTVETV 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V ARSFLH Q+RSFVG+L+ VG G W + +AL A++RK CGP+AP Sbjct: 180 TRPDGYPEYRFHVRARSFLHNQVRSFVGTLERVGAGAWPPERVGEALAARERKACGPVAP 239 Query: 236 PEGLYFDSVEY 246 P+GLY +V+Y Sbjct: 240 PQGLYLAAVKY 250 >gi|110632752|ref|YP_672960.1| tRNA pseudouridine synthase A [Mesorhizobium sp. BNC1] gi|123162871|sp|Q11LD0|TRUA_MESSB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110283736|gb|ABG61795.1| tRNA pseudouridine synthase A [Chelativorans sp. BNC1] Length = 247 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 137/247 (55%), Positives = 172/247 (69%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ S+Q +IEKAI +GE V + GAGRTD+GVHAL Q Sbjct: 1 MHRFRIDIEYDGGPYAGWQRQAGQHSVQEAIEKAIAAFSGEEVTIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSI-VDKQFHARFSAIRRSYLYRIITR 119 VAHFDL REW + ALNA+L ++ + + V + F ARFSA R YLYRI R Sbjct: 61 VAHFDLSREWKSDKVRDALNAHLTLAGEAVSILRAEAVAEDFDARFSAKARHYLYRIANR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++PLALE+GRAW + + LD M AAQ LVG+HDFTTFRS+ CQA SP++T+D DV Sbjct: 121 RSPLALERGRAWHVARRLDAAAMHEAAQRLVGKHDFTTFRSVQCQAKSPVKTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ IEI ARSFLH Q+RS VG+LK VG+G WT+ D + ALQA+DR CGP+APP+GL Sbjct: 181 VGDEIEIHASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLVRVDY 247 >gi|253682551|ref|ZP_04863348.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253562263|gb|EES91715.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 246 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 128/248 (51%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +IIEY+GS Y GWQ+QK+ ++Q +E+AI +T + G RTD+GVHA Sbjct: 1 MKRNVKLIIEYDGSNYSGWQKQKHSITVQQKVEEAISEITKTDTEIIGCSRTDAGVHARN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P A+N+ L I I S V FHARF + + Y+Y I+ R Sbjct: 61 FVANFITESSVPPSKFKYAINSKL--PKDIVIKKSSEVPLDFHARFHSKGKKYVYTILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +++ + K LD M++A+++ + + ++ S +RTI + DV Sbjct: 119 EEPPTIDRNVMYHFNKDLDVNAMKMASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++I+ V+ FL+ +R G+L G G+ D++ + A+DR++ G PP+G Sbjct: 179 KCEDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIRPEDIKAIILAKDREKAGRSLPPQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLQEVLY 246 >gi|53722721|ref|YP_111706.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|124382508|ref|YP_001025653.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] gi|126446203|ref|YP_001077728.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|217422201|ref|ZP_03453704.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238563050|ref|ZP_04610365.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|251766902|ref|ZP_04819864.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|254176501|ref|ZP_04883159.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|254184999|ref|ZP_04891588.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|254201168|ref|ZP_04907533.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|254205140|ref|ZP_04911493.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|62901261|sp|Q63JL6|TRUA_BURPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228683|sp|A3MBU2|TRUA_BURM7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228684|sp|A2S134|TRUA_BURM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52213135|emb|CAH39174.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei K96243] gi|126239057|gb|ABO02169.1| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10247] gi|147748780|gb|EDK55855.1| tRNA pseudouridine synthase A [Burkholderia mallei FMH] gi|147754726|gb|EDK61790.1| tRNA pseudouridine synthase A [Burkholderia mallei JHU] gi|160697543|gb|EDP87513.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 10399] gi|184215591|gb|EDU12572.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1655] gi|217394432|gb|EEC34451.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 576] gi|238521484|gb|EEP84935.1| tRNA pseudouridine synthase A [Burkholderia mallei GB8 horse 4] gi|243064541|gb|EES46727.1| tRNA pseudouridine synthase A [Burkholderia mallei PRL-20] gi|261826841|gb|ABM98766.2| tRNA pseudouridine synthase A [Burkholderia mallei NCTC 10229] Length = 271 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VVHFDTDLDRADFSWVRGTNAFL--PPTVAVQWAKPMPDTFHARFAAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + Sbjct: 119 VRSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 GDFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|254441675|ref|ZP_05055168.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] gi|198251753|gb|EDY76068.1| tRNA pseudouridine synthase A [Octadecabacter antarcticus 307] Length = 256 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 118/251 (47%), Positives = 157/251 (62%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGAPFCGWQRQTSDPSVQGAIEAALAKLEPRGHTIGAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +ALN +LK + + + + D +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMDKTWDAFRLSEALNFHLKPAPVSIVACVQVAD-DWHARFSALERRYLFRLVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE G+ W + + LD M+ A L+G HDFTTFRS CQA SP+RT+D D+ Sbjct: 120 APLVLEAGKVWQVSQKLDGAAMQAGADRLLGHHDFTTFRSTVCQADSPMRTLDGLDIEQV 179 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V ARSFLH Q+RSFVG+L+ VG G WT D+ AL A+DR CGP+ P Sbjct: 180 ARSDGAQEFRFHVRARSFLHNQVRSFVGTLERVGAGAWTRDDVSAALNARDRTACGPVCP 239 Query: 236 PEGLYFDSVEY 246 P GLY SV Y Sbjct: 240 PHGLYLASVGY 250 >gi|73667044|ref|YP_303060.1| tRNA pseudouridine synthase A [Ehrlichia canis str. Jake] gi|123773369|sp|Q3YS43|TRUA_EHRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72394185|gb|AAZ68462.1| tRNA pseudouridine synthase [Ehrlichia canis str. Jake] Length = 245 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 159/246 (64%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQRQK+ +SIQ +E+AIF + E V + AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQRQKHLSNSIQEILEEAIFKFSRESVTTYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ ++ A+N +L I +IS+LN+ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTADFDAYVVRNAINYHL-IPHSISVLNVEKTDDEFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWL+ LD E M A +++ G HDF++FR+ HCQ+ SP++T+D + Sbjct: 120 SPLTIDYNRAWLVRNPLDVEKMMRAVEYIKGNHDFSSFRARHCQSKSPVKTMDDLKIIHS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I A SFLH Q+R VG+L G + + L+A+DR G APP GLY Sbjct: 180 DQCIDIYFSAISFLHNQVRIIVGTLVECGKNSFPPEYTKDILEAKDRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|254463862|ref|ZP_05077273.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] gi|206684770|gb|EDZ45252.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium Y4I] Length = 255 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEAALARLEPGEHTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++W P L +ALN +LK D ++I+ + VD +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDMAKDWDPFRLSEALNYHLK-PDPVAIVGCARVDDDWHARFSAVERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD + M+ AA +L+G HDFTTFRS CQA SP++T+D V Sbjct: 120 APATHDAGQVWQLSHELDADAMQEAANYLIGNHDFTTFRSSICQAQSPVKTLDELTVERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPADVKAALEARDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|119897336|ref|YP_932549.1| tRNA pseudouridine synthase A [Azoarcus sp. BH72] gi|119669749|emb|CAL93662.1| pseudouridine synthase A [Azoarcus sp. BH72] Length = 265 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G + GWQ Q++G ++Q ++E A+ + GE V +H AGRTD+GVHA Q Sbjct: 1 MVRLALGVEYAGDRFEGWQSQRHGRTVQDALEAALSRIAGEAVKLHCAGRTDTGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + +N +L +++ VD FHARF A R Y Y + Sbjct: 61 VAHFDTAAVRPLSAWIRGVNTHL--PAGVAVRWAVEVDDAFHARFLAYERRYRYVLFNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL GR LD M AA+ LVG DF+ FR+ CQA +P+R + V Sbjct: 119 TRPALLAGRVGWFHLPLDEGAMAEAARCLVGMQDFSAFRAAECQAKTPVRDMREVRVQRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FLH IR+ VG+L VG G++ L + L +DR P P+GLY Sbjct: 179 GDYLIFDFRADGFLHHMIRNLVGALVYVGKGRYPPGWLAEVLAGRDRSRAAPTFAPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LCGVSY 244 >gi|260171626|ref|ZP_05758038.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 267 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V H RF A R+Y Y + T Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDAHVRFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + L+ E M AA L +DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|254517504|ref|ZP_05129560.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] gi|226911253|gb|EEH96454.1| tRNA-pseudouridine synthase I [Clostridium sp. 7_2_43FAA] Length = 244 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 138/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +EY+G+ Y GWQ+QK G++IQ ++E+AI L+T E V G+ RTD+GVHA Sbjct: 1 MRNIKLTLEYDGTNYLGWQKQKIGATIQETLEEAIRLLTNEESEVIGSSRTDAGVHARGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +A+N L + I IL V++ FH+R+SA ++Y Y I+ R Sbjct: 61 VANFKTNSTIPSEKFREAINYRL--PNDIVILKSEEVEEDFHSRYSAKGKTYSYSILNRD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K + + + LD E+M+ A ++ +G DF F+S + +RTI ++ Sbjct: 119 VNSAIGKDYVYHVKRKLDVEDMKEACKYFIGTKDFMAFKSSGSSVKTTVRTISDLYIDIK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+I V FL+ +R VG+L +VG K S +++ ++++DRK+ G P GL Sbjct: 179 DDIIKIYVTGDGFLYNMVRIIVGTLIMVGSNKIDSREVKNIIESKDRKKAGICVPAAGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVYY 244 >gi|160887061|ref|ZP_02068064.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] gi|156107472|gb|EDO09217.1| hypothetical protein BACOVA_05075 [Bacteroides ovatus ATCC 8483] Length = 267 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARF A R+Y Y + T Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISVYRVCRVRPDTHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|147676690|ref|YP_001210905.1| tRNA pseudouridine synthase A [Pelotomaculum thermopropionicum SI] gi|146272787|dbj|BAF58536.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI] Length = 273 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + I Y+G+ Y+G+Q Q+ ++Q IE+ + + GE + V GAGRTD+GVHA Sbjct: 26 MRNIKVTIAYDGTNYYGFQEQRGTKFRTVQEVIEERLSRLAGEQIRVIGAGRTDAGVHAR 85 Query: 59 RQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F+ P + ALN+ L I+ L V FHARFSA+ ++Y Y I Sbjct: 86 GQVINFNPGNWPIPPERVAYALNSLL--PRDIAALESVEVPPSFHARFSAVAKTYRYTIY 143 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + ++ +P+ LD E M+ A L+GRHDF+ FR++ S +RT+ V Sbjct: 144 NARVHSPFLRLYSYHVPRRLDVEAMQAGAALLIGRHDFSAFRALGTPVKSTVRTMLEACV 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+L+ I + A FL+ R G+L VG GK ++ L+++D GP AP Sbjct: 204 SREGDLVYIDLKADGFLYHMARMIAGTLIRVGLGKIPPGEVAAILKSRDSLRGGPTAPAR 263 Query: 238 GLYFDSVEYS 247 GL + +EY+ Sbjct: 264 GLCLEKIEYT 273 >gi|113461401|ref|YP_719470.1| tRNA pseudouridine synthase A [Haemophilus somnus 129PT] gi|122945393|sp|Q0I4X5|TRUA_HAES1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|112823444|gb|ABI25533.1| pseudouridylate synthetase [Haemophilus somnus 129PT] Length = 269 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANL--PADIAVRWAKVVSEDFHARFSATARRYRYLIYNHPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +LD M A Q+L+G HDF++FR+ CQ+++P R I H V Sbjct: 119 RSALFPTGVTHHHVALDHRLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHHLHVFRQA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A P+GLY Sbjct: 179 NYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVKY 243 >gi|254514517|ref|ZP_05126578.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] gi|219676760|gb|EED33125.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR5-3] Length = 272 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R + IEY+GS Y GWQ Q ++Q +E A+ + V V AGRTD+GVHA Sbjct: 6 QRVALKIEYDGSAYSGWQSQPQLPKVRTVQTEVEVALSKIANSPVRVFCAGRTDTGVHAA 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFD + NA L + + + V + FHAR SA+ R Y Y I Sbjct: 66 AQWLHFDAPCDRSLKAWIVGANAQL--PLDVRLTDGLSVAEDFHARHSAVARQYDYLIAN 123 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P AL R + + LD MR + Q L+G DF+ FR+ CQ+++P+R ++ V Sbjct: 124 TRTPSALLANRMVWVRQPLDANLMRCSLQALLGEQDFSAFRAASCQSTTPMRFMESTQVF 183 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++I+IRVVA +FLH +R+ VGS VG + + L + L +DR + APP+G Sbjct: 184 RRGDIIQIRVVANAFLHHMVRNIVGSCLQVGLCEQPAGWLGELLAGRDRTQAAATAPPQG 243 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 244 LYLTGVRY 251 >gi|299148560|ref|ZP_07041622.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] gi|298513321|gb|EFI37208.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_23] Length = 267 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|148245016|ref|YP_001219710.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] gi|146326843|dbj|BAF61986.1| tRNA pseudouridine synthase A [Candidatus Vesicomyosocius okutanii HA] Length = 247 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK N ++Q IE+A+ V + V V +GRTD+GVHA Q Sbjct: 1 MKLALGVEYLGTHFHGWQCQKSNIRTVQQVIEQALSSVANQPVRVFCSGRTDTGVHATCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N +L ++ + VD FHARFS I R Y Y+I + Sbjct: 61 VIHFETNIKRKNKAWLFGGNVHL--PSDVNFTWVKPVDDNFHARFSVITRQYNYKIHNTK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ + P+ LD M A Q+L G+H+F+ FR CQA SPI+ I+ + Sbjct: 119 IRSSIIATHSLWEPRKLDIVAMNKAGQYLTGKHNFSAFRGSLCQAKSPIKNIEFIKLTKH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VG+L VG G+ + + L ++ RK+ GP APP+GLY Sbjct: 179 DDNILLDIKANAFLHHMVRNIVGTLLKVGKGEKPIEWVREVLNSKQRKQAGPTAPPQGLY 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FIRAFY 244 >gi|218895277|ref|YP_002443688.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|218542262|gb|ACK94656.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] Length = 252 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTIAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|126174949|ref|YP_001051098.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] gi|166229833|sp|A3D666|TRUA_SHEB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125998154|gb|ABN62229.1| tRNA pseudouridine synthase A [Shewanella baltica OS155] Length = 261 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETQAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|255693609|ref|ZP_05417284.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] gi|260620585|gb|EEX43456.1| tRNA pseudouridine synthase A [Bacteroides finegoldii DSM 17565] Length = 254 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + A+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMNALSTFLRREIEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V + HARF A R+Y Y + T Sbjct: 61 VAHFDYDEPLDTESVADKLNRLL--PPDISVYRVCRVRPEAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + LD E M AA+ L DFT+F +H + I I H + Sbjct: 117 AKYPFNRQYRCRVYSPLDYERMNEAAKVLFEYTDFTSFSKLHTDVKTNICHITHAEWTRE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK + + ++ +DR + G AP + L Sbjct: 177 EDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLSIEGFRRIIEQKDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|311029085|ref|ZP_07707175.1| Pseudouridylate synthase I [Bacillus sp. m3-13] Length = 248 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R I+ Y+G+G+ G+Q QK ++Q +++A+ + G V V +GRTD+GVHA+ Sbjct: 1 MNRLKCILTYDGAGFEGYQIQKEKRTVQLEVQRALSRIHKGTEVKVSASGRTDAGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA+L I + + V FHARF +++ Y Y++ Sbjct: 61 QVLHFDSPLSIPVAAWQNALNAHL--PKDIWVKKVESVSGDFHARFDVVKKEYRYKVSLA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + + P LD E ++ A HL+G HDFT+F S + +RTI +V Sbjct: 119 KDFNVFDRDQVYHYPYPLDLEAVKEACGHLIGEHDFTSFCSAKTEVEDKVRTIYSLEVVR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +E R++ FL+ +R VG+L +G GK D+ L+A+DR G AP GL Sbjct: 179 NGEELEFRIIGNGFLYNMVRIIVGTLLEIGQGKKLPRDIFSILEARDRGAAGKTAPAHGL 238 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 239 YLWNVVY 245 >gi|256822702|ref|YP_003146665.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] gi|256796241|gb|ACV26897.1| tRNA pseudouridine synthase A [Kangiella koreensis DSM 16069] Length = 264 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G Y GWQRQ + SS+Q ++EK + + E + V AGRTD+GVHA Q Sbjct: 1 MTKVALCIEYDGHRYHGWQRQSHASSVQQTLEKVLSTIADEPIEVSCAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HF+L E N L D I++ V FHARFSA R Y Y I Sbjct: 61 IIHFELSNERPLKAWTMGANTQL--PDDIAVRWAHSVSDDFHARFSAKARRYRYIIANTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD + M A + G DF F++ CQ+ + R I H V Sbjct: 119 TRPAISRSGLTWCRAPLDIDVMNQACAYFPGEQDFAAFQAASCQSKTSFRNIHHLFVERL 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +FLH +R+ GSL +G ++ L +DR + A P GLY Sbjct: 179 GEYVVIDIKANAFLHHMVRNIAGSLIEIGRYNQKPEWAKQLLDGKDRTQAASTASPNGLY 238 Query: 241 FDSVEY 246 VEY Sbjct: 239 LVDVEY 244 >gi|322831951|ref|YP_004211978.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] gi|321167152|gb|ADW72851.1| tRNA pseudouridine synthase A [Rahnella sp. Y9602] Length = 276 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEY+GS YFGWQRQ+ +S+Q +EKA+ V +VV AGRTD+GV A QV Sbjct: 17 RVALGIEYDGSAYFGWQRQQGVASVQECLEKALSRVANAPIVVFCAGRTDAGVSATGQVV 76 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +N +L I++ + V + FHARFSA R Y Y I + Sbjct: 77 HFDTPVLRKDAAWTMGVNTHL--PKDIAVRWCANVGEDFHARFSATARRYRYVIYNNRYR 134 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M++A Q L+G +DFT+FR+ CQ+ +P R + H +V+ G+ Sbjct: 135 SAILHAGVTHVHMPLDVEKMQLAGQALLGENDFTSFRASQCQSRTPWRYVMHVNVSRHGS 194 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DR PEGLY Sbjct: 195 YVVVDIKANAFVHHMVRNIVGSLVEIGAGNQPVGWMGELLAAKDRNLAAATGKPEGLYLV 254 Query: 243 SVEY 246 V+Y Sbjct: 255 CVDY 258 >gi|298530329|ref|ZP_07017731.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] gi|298509703|gb|EFI33607.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans ASO3-1] Length = 247 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+GY GWQ QK+G +IQG +EKA+ + + VHG+GRTD+GVHAL QV Sbjct: 3 MRVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +++ V +ALNA L I +L+ + D++FHARFSA + Y Y + T+ A Sbjct: 63 AHFDPPPKFLNVPWNRALNAVL--PPGIRVLDFARTDRKFHARFSARAKQYSYTLWTQGA 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DVNS 179 ++ LD E M+ A L G HDF F + + + IRT+ + Sbjct: 121 FFYPQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGF 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL R+ V +L VG K + +L+ +Q +DR AP GL Sbjct: 181 TPQETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGL 240 Query: 240 YFDSVEY 246 + V Y Sbjct: 241 CLEHVTY 247 >gi|29349645|ref|NP_813148.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|253569984|ref|ZP_04847393.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] gi|42559809|sp|Q89ZY4|TRUA_BACTN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29341555|gb|AAO79342.1| tRNA pseudouridine synthase A [Bacteroides thetaiotaomicron VPI-5482] gi|251840365|gb|EES68447.1| tRNA pseudouridine synthase A [Bacteroides sp. 1_1_6] Length = 269 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 120/249 (48%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q + KA+ V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V HARF A R+Y Y + T Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLL--PPDISVYRVRQVKPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + + SLD E M AA+ L DFT+F +H + I I H + Sbjct: 117 AKYPFNRQYRYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKM 176 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L VG GK T K ++ QDR + G AP Sbjct: 177 EGEDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGN 236 Query: 238 GLYFDSVEY 246 L+ +VEY Sbjct: 237 ALFLVNVEY 245 >gi|228937445|ref|ZP_04100091.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970331|ref|ZP_04130990.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976901|ref|ZP_04137313.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228782871|gb|EEM31037.1| tRNA pseudouridine synthase A [Bacillus thuringiensis Bt407] gi|228789440|gb|EEM37360.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822278|gb|EEM68260.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937937|gb|AEA13833.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ + +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEIKKIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|257092844|ref|YP_003166485.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045368|gb|ACV34556.1| tRNA pseudouridine synthase A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 266 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GSG+ GWQ Q G ++Q +++ A+ G V V AGRTD+GVHA QV Sbjct: 1 MRIALAVEYDGSGFRGWQTQPGGGTVQDAVQDALRQFAGVPVQVVSAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + N++L +++ V FHARFSA R Y Y +I R Sbjct: 61 VHFDAAVERSMFAWVRGTNSFL--PSAVAVRWARPVADDFHARFSAYARRYRYLLINRAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR LD M+ AA L+G DF+ FR+ CQA+SP++ + V FG Sbjct: 119 RTGVWNGRVGWYHHPLDVGTMQAAAHLLLGERDFSAFRAAECQANSPVKVMREAHVRRFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI A +FLH +R+ VGSL VG GK + + L A DR+ P GLY Sbjct: 179 DLIAFDFEASAFLHHMVRNLVGSLVHVGQGKRPPEWIGELLAAGDRRLAAPTFAAAGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 FAVRY 243 >gi|149912589|ref|ZP_01901123.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149916040|ref|ZP_01904563.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149810114|gb|EDM69962.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] gi|149812995|gb|EDM72821.1| tRNA pseudouridine synthase A [Roseobacter sp. AzwK-3b] Length = 255 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 115/250 (46%), Positives = 160/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKVEYDGAPFAGWQRQAEQPSVQGAIEAALARLEPGPHKIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLV++W P L A+N +LK + + + + +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVKDWEPFKLMGAVNYHLKPAPVAVVACAQVAE-DWHARFSALERRYLFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P LE GR W +P+SLD MR A+HL+G+HDFTTFRS CQA SP++T+D ++ Sbjct: 120 PPETLEAGRVWRVPQSLDVAAMREGARHLLGKHDFTTFRSSICQAKSPVKTLDALEIEEA 179 Query: 181 GNLI----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 EGLGGPELRFHLSARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLAGVGY 249 >gi|157804248|ref|YP_001492797.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] gi|166228759|sp|A8F079|TRUA_RICCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157785511|gb|ABV74012.1| tRNA pseudouridine synthase A [Rickettsia canadensis str. McKiel] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 150/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE VV+ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTDLAGWQRQAGIMSVQQILEEAIYKFSGEQVVLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + + A+N + ++ + N + FHARFSA+ R Y+YRI+ R Sbjct: 61 VAHFDLSKNLETHKIITAINYF-ARPYSVIVWNCEMAPNNFHARFSAVSRHYIYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + R W I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YSSVINRDRVWWISSPLDVLAMQKAATYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + +++ L+ +DRK GP AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNVWQAEYIKELLEVKDRKAAGPTAPASGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVRTEY 245 >gi|77919497|ref|YP_357312.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] gi|123756611|sp|Q3A3B5|TRUA_PELCD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77545580|gb|ABA89142.1| tRNA pseudouridine synthase A [Pelobacter carbinolicus DSM 2380] Length = 252 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 126/247 (51%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIEY+G+ Y GWQRQ NG S+Q +E+A+ V G + +GRTD+GVHA Sbjct: 1 MSVVRLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF + + +N +L I++ + +++ FHAR+SA+ + Y Y I Sbjct: 61 VAHFVTPQPLPMAAYREGVNRFL--PAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L +W + LD + MR AA+ LVGRHDF FR+ C A + +R + D+ Sbjct: 119 VRSPLACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V FL +R VG+L VG G ++ L RK+ G AP +GL Sbjct: 179 EEWVYVDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLC 238 Query: 241 FDSVEYS 247 V Y+ Sbjct: 239 LMEVAYA 245 >gi|116051110|ref|YP_790059.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa UCBPP-PA14] gi|115586331|gb|ABJ12346.1| tRNA-pseudouridine synthase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 285 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+ +DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLETRDRRAGGVTAHPYGLYL 256 Query: 242 DSVEY 246 VEY Sbjct: 257 VRVEY 261 >gi|254883215|ref|ZP_05255925.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] gi|254836008|gb|EET16317.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_3_47FAA] Length = 263 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 7 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR Sbjct: 67 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTR-- 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 123 KDPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 182 Query: 182 -NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 183 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 242 Query: 241 FDSVEY 246 V Y Sbjct: 243 LVDVGY 248 >gi|330813516|ref|YP_004357755.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] gi|327486611|gb|AEA81016.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter sp. IMCC9063] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 156/246 (63%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+EY+G+ + GWQRQ NG S+Q ++EK++ +T E + +HG+GRTD+GVHA Q Sbjct: 1 MRRYKCIVEYDGTSFVGWQRQTNGYSVQEAVEKSLKSITQEKIRIHGSGRTDTGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + ALN YLK + + IVD F AR SAI R+Y Y II R Sbjct: 61 VIHFDSNTNLDEYTITSALNHYLKKELISIL-STEIVDDNFDARRSAILRTYEYLIINRA 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APLA++K +AW I K L+ + + A + G HDFTTFR+ C+ASSPIRTI++ + + Sbjct: 120 APLAIDKNKAWHISKPLNEKLIFAAIKIFEGTHDFTTFRAASCEASSPIRTIEYTEAFAR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I ++SFL Q+RS +G+LKL+G+ KW+ DL+ AL ++DR C LAP GLY Sbjct: 180 NEEILITFQSKSFLQHQVRSMIGALKLIGEEKWSIRDLQSALDSKDRSRCAALAPACGLY 239 Query: 241 FDSVEY 246 V + Sbjct: 240 LLKVSF 245 >gi|258512640|ref|YP_003186074.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479366|gb|ACV59685.1| tRNA pseudouridine synthase A [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 262 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+GSG+ G+ RQ+ ++QG +E + + G ++V G+GRTD GVHA QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + L L + + VD+ FHARFS +R++Y Y + Sbjct: 65 VHFDLPYGPPADRMVHVLRRRL--PADLLPRDAGEVDEGFHARFSVVRKTYRYTLDLAPL 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +W P+ LD M+ AA+HL+G HDFT+F + + +R ID + G Sbjct: 123 PSLYWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVEFRQDG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I FL +R VG+L VG G+ + L+A+DR+ G APP GL Sbjct: 183 SRLHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCL 242 Query: 242 DSVEY 246 +VEY Sbjct: 243 WNVEY 247 >gi|217972794|ref|YP_002357545.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] gi|254764864|sp|B8EEB7|TRUA_SHEB2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217497929|gb|ACK46122.1| tRNA pseudouridine synthase A [Shewanella baltica OS223] Length = 261 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R + +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNVHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|294778889|ref|ZP_06744305.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] gi|294447198|gb|EFG15782.1| tRNA pseudouridine synthase A [Bacteroides vulgatus PC510] Length = 257 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR Sbjct: 61 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTR-- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 117 KDPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 176 Query: 182 -NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVDVGY 242 >gi|184155960|ref|YP_001844300.1| tRNA pseudouridine synthase A [Lactobacillus fermentum IFO 3956] gi|238692990|sp|B2GDT8|TRUA_LACF3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183227304|dbj|BAG27820.1| pseudouridylate synthase A [Lactobacillus fermentum IFO 3956] Length = 258 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQIQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ASGLYLVEVTY 249 >gi|167577247|ref|ZP_02370121.1| tRNA pseudouridine synthase A [Burkholderia thailandensis TXDOH] Length = 270 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|119945656|ref|YP_943336.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] gi|166228751|sp|A1SW72|TRUA_PSYIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119864260|gb|ABM03737.1| tRNA pseudouridine synthase A [Psychromonas ingrahamii 37] Length = 261 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK S+Q +E+++ + V VH AGRTDSGVH+ QV Sbjct: 1 MRIALGIEYDGAAYYGWQRQKEVISVQQELEQSLSKIANHTVRVHCAGRTDSGVHSTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +NA L I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETEAIRKDVAWTLGVNANL--PKDIAVRWVKQVDSSFHARFSATARHYRYIIYNGAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M +A Q L+G DFT+FR++HCQASSP++ I++ +++ Sbjct: 119 RPGILGTGLSHYHMDLDVQKMHLAGQMLLGEQDFTSFRALHCQASSPVKCIEYLNISQRS 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A +FLH +R+ GSL +G GK L+ L +DR + A P GLY Sbjct: 179 QFIIIDIKANAFLHHMVRNIAGSLIEIGCGKQPVDWLKTLLAYKDRSKAAATAKPGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|83943967|ref|ZP_00956424.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] gi|83954540|ref|ZP_00963251.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83840824|gb|EAP79995.1| tRNA pseudouridine synthase A [Sulfitobacter sp. NAS-14.1] gi|83845214|gb|EAP83094.1| tRNA pseudouridine synthase A [Sulfitobacter sp. EE-36] Length = 262 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + +S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MQRYALKIEYHGAPFVGWQRQIDLASVQGAIEDALAKIEPRAHNIAAAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +A+N +LK + +++ D FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDMERDWTPFRLSEAINYHLKPLPIAIVDCVAVDD-DFHARFSALERRYLFRVLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + G W + K LD + MR AA HL+G HDFTTFRS CQA +P++T+D D+ Sbjct: 120 PPATHQAGLVWQVKKPLDIDRMREAATHLIGEHDFTTFRSTICQAQTPVKTLDRVDMTEH 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ V ARSFLH Q+RS VG+L+ VG G + D+++ L A+DR+ CGP+APP Sbjct: 180 PVGGGVEVQFDVRARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLSHVTY 249 >gi|304411873|ref|ZP_07393484.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|307303359|ref|ZP_07583114.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] gi|304349733|gb|EFM14140.1| tRNA pseudouridine synthase A [Shewanella baltica OS183] gi|306913719|gb|EFN44141.1| tRNA pseudouridine synthase A [Shewanella baltica BA175] Length = 261 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+GYFGWQRQ S+Q +E+A+ +V E + V AGRTD+GVHA QV Sbjct: 1 MRIALGIEYDGNGYFGWQRQAEVDSVQAQLERALSIVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + VD FHARFSA R Y Y I Sbjct: 61 VHFETHAIRNEGAWTLGVNANL--PDNIAVRWVKEVDDSFHARFSATARRYRYVIYNHSF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + +D + M AAQ L+G DFT+FR++ CQ+ +P R I +V G Sbjct: 119 RPGILRHGVSHYHGDIDADRMHQAAQALLGEQDFTSFRAVQCQSKTPFRNIHCVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G T + L +DR + A P GLY Sbjct: 179 MYVIVDIAANAFLHHMVRNIVGSLLEIGLGNQPLTWMGDLLALKDRNQAAATAKPHGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|311694720|gb|ADP97593.1| tRNA pseudouridine synthase A [marine bacterium HP15] Length = 302 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + EY+G G+ GWQ QK S++ + A+ V V + AGRTD+GVHA Q+ Sbjct: 18 RVALAFEYDGRGFHGWQLQKSGVRSVEAELTAAVAKVANHAVDLVCAGRTDAGVHASYQI 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N L D IS+ FHARFSA R Y Y I Sbjct: 78 AHFDTPSVRNLRSWVMGINTAL--PDDISVHWAGNGVGDFHARFSATYRRYRYIIYNHPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + LD + M AAQ L G HDF++FR+ CQ+ +PIR ++ V Sbjct: 136 RPGIQRGQVSWTFRPLDADRMHRAAQALAGEHDFSSFRAAGCQSRTPIRFLERISVTRKR 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG GK + + L A+DR G APP GLY Sbjct: 196 DFVVIDVQANAFLHHMVRNIAGALMAVGSGKQRPEWIHEILVARDRTAAGVTAPPHGLYL 255 Query: 242 DSVEY 246 V Y Sbjct: 256 VDVGY 260 >gi|157374791|ref|YP_001473391.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] gi|189030145|sp|A8FTU0|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3] Length = 261 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G YFGWQRQ S+Q +E+A+ V E + VH AGRTD+GVHA QV Sbjct: 1 MRVALGIEYDGRQYFGWQRQAEVDSVQAQLERALSKVANEPIRVHCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + IVD +FHARFSA R Y Y I Sbjct: 61 VHFETNAIRKDSAWTLGVNVNL--PDDIAVRWVKIVDDEFHARFSATARRYRYMIYNYDF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + ++D + M AAQ VG HDFT+FR++HCQ+ +P R++ +V G Sbjct: 119 RPGILRSGVSHYRGNIDADIMHQAAQQFVGEHDFTSFRALHCQSKTPFRSVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +FLH +R+ VG+L +G G + + L +DR + P A P GLY Sbjct: 179 MYICVDIKANAFLHHMVRNIVGTLLEIGLGNQRPEWIPQLLDLKDRSQAAPTAKPNGLYM 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|170718977|ref|YP_001784140.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] gi|189030135|sp|B0USP1|TRUA_HAES2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168827106|gb|ACA32477.1| tRNA pseudouridine synthase A [Haemophilus somnus 2336] Length = 269 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG+ YFGWQRQ N +S+Q +E A+ V E ++ AGRTDSGVHA QV Sbjct: 1 MKIALGIEYNGTHYFGWQRQANVTSVQEKLESAVSFVANEFCQIYCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD LNA L I++ +V + FHARFSA R Y Y I Sbjct: 61 VHFDTKAIRSEKAWTFGLNANL--PADIAVRWAKVVSEDFHARFSATARRYRYLIYNHPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +LD M A Q+L+G HDF++FR+ CQ+++P R I H V Sbjct: 119 RSALFPTGVTHHHVALDHHLMHQAGQYLLGEHDFSSFRAAQCQSNTPWRNIHHLHVFRQA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + + A +F+H +R+ VGSL +G GK ++ L +DR P A P+GLY Sbjct: 179 NYIIVDIQANAFVHHMVRNIVGSLLEIGSGKQPVEWMDWLLTQKDRTLAAPTAKPDGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVKY 243 >gi|146317967|ref|YP_001197679.1| tRNA pseudouridine synthase A [Streptococcus suis 05ZYH33] gi|166229845|sp|A4VT40|TRUA_STRSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145688773|gb|ABP89279.1| Pseudouridylate synthase [Streptococcus suis 05ZYH33] Length = 249 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDNVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|86141215|ref|ZP_01059761.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] gi|85831774|gb|EAQ50229.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] Length = 263 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 7/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + I Y+G+ Y GWQRQ ++Q +E+A+ + V V GAGRTD+GVHA + A Sbjct: 11 RYFIEIAYDGTSYHGWQRQPQSITVQEVLEEALSTLLRSEVPVVGAGRTDAGVHATQLFA 70 Query: 63 HFDLVREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HF++ + L LN +L + +++ L V + HARF A+RRSY Y+I Sbjct: 71 HFEIEESYSFEALSHLKFRLNRFL--PEAVAVNALLPVSAEAHARFDAVRRSYEYKIHMV 128 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + + P ++D N AA L+GR DF F + I I + Sbjct: 129 KNPFLVNQSYYFEKPLNVDAMN--EAAAFLLGRQDFKCFSRSKTDVKTYICEITEARWDQ 186 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + A FL +R+ VG+L +G GK L+ + ++ R E G AP GL Sbjct: 187 DGAQLKFSISADRFLRNMVRAIVGTLLEIGQGKLKPAALKTIIASRTRSEAGASAPAHGL 246 Query: 240 YFDSVEY 246 Y V Y Sbjct: 247 YLTEVAY 253 >gi|257870548|ref|ZP_05650201.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257804712|gb|EEV33534.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 247 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ NG ++Q IEK + + G+ V +HG+GRTD+GVHAL Sbjct: 1 MVRYKATIAYDGTNFQGFQRQPNGRTVQEEIEKTLTRMNNGQAVQIHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + + + I++ + IVD+ FHAR+ ++Y +R+ Sbjct: 61 QVIHFDFDERPLEKM---RFGLDTQTPEDIAVKQVEIVDEHFHARYLVREKTYQFRVDIG 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P LD ++ A L+G HDFT+F + +RTI + Sbjct: 118 KPRSPFRRYYASYYPYPLDLMKIQQALPDLLGTHDFTSFCATGSSVEDKVRTIHQASMEV 177 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ IR VG+L +G+G+ + + + +DR GP A PE Sbjct: 178 NEAGDELLFTFRGDGFLYKMIRIMVGTLLKIGNGRLPADSIPAIIAQKDRNAAGPTAHPE 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLVRVAY 246 >gi|317131990|ref|YP_004091304.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] gi|315469969|gb|ADU26573.1| tRNA pseudouridine synthase A [Ethanoligenens harbinense YUAN-3] Length = 252 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ ++G+ Y GWQ QKNG ++Q ++ A+ V V G RTD+GVHAL Sbjct: 1 MRNILLLLRFDGAAYHGWQVQKNGVTVQEVLQNALETVLRHRPPVTGCSRTDAGVHALAY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F L +ALNA L D I++ V FHAR+SA + Y+YRI+ Sbjct: 61 ACNFRTEHTIPCQNLVRALNACL--PDDIAVFACREVPPDFHARYSAHEKEYVYRILNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A +GRA +P LD M AA+ +G HDF FR+ +RT+ H V Sbjct: 119 ARDPFWRGRALHVPYPLDEAVMDKAARGFLGTHDFAGFRAAGSDVKDTVRTVFHSGVQRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ RV A FL+ +R VG+L K D+ + ++DR GP AP GLY Sbjct: 179 GDLVLFRVRADGFLYNMVRIMVGTLLYTAQDKLQPADILAVIDSRDRTAAGPTAPAHGLY 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LNRVFY 244 >gi|167566409|ref|ZP_02359325.1| tRNA pseudouridine synthase A [Burkholderia oklahomensis EO147] Length = 270 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA+HLVG HDF+ FRS CQA SPI+ + + G Sbjct: 119 RSPMLAGRAGWVHMPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPIKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L ++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLDSRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|163750187|ref|ZP_02157429.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] gi|161330043|gb|EDQ01027.1| tRNA pseudouridine synthase A [Shewanella benthica KT99] Length = 261 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTDSGVH QV Sbjct: 1 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPISVHCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD FHARFSA R Y Y I Sbjct: 61 VHFETTAIRKESAWTLGVNVNL--PDDIAVKWVKLVDDDFHARFSATARRYRYIIYNYHL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD + M AAQH VG HDFT+FR++HCQ+ +P R + +V G Sbjct: 119 RPGILRSGVSHYRGQLDEDKMHHAAQHFVGEHDFTSFRALHCQSKTPFRHVHEVNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + L +DR + P A P GLY Sbjct: 179 MYLCVDIKANAFLHHMVRNIVGSLIEIGLGHQNEDWIVSLLALKDRSKAAPTAKPNGLYM 238 Query: 242 DSVEY 246 V Y Sbjct: 239 VDVTY 243 >gi|229107828|ref|ZP_04237464.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] gi|228675677|gb|EEL30885.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-15] Length = 252 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q N ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPNHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I R V FL+ +R VG+L VG GK S + + L Q+R+ G +AP GL Sbjct: 184 QDDEIIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDSDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|254510182|ref|ZP_05122249.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] gi|221533893|gb|EEE36881.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium KLH11] Length = 255 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 120/250 (48%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYHGEPFAGWQRQKEQPSVQGAIEAALSRIEPGDHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++I+ + V+ +HARFSA+ R YL+RI+ R+ Sbjct: 61 VAHCDLTKDWDPFRLSEALNYHLK-PQPVAIVKAARVNDDWHARFSALERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP +KG+ W I +LD M+ A L+G+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQINHTLDVAAMQAGADMLIGQHDFTTFRSSICQAASPVKTLDALRVEQV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGAEIHFHVRARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLARVGY 249 >gi|225871229|ref|YP_002747176.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] gi|254764866|sp|C0M8L4|TRUA_STRE4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225700633|emb|CAW95185.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. equi 4047] Length = 249 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str. F4969] Length = 248 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVNVGLGKIEPKYINDILEAKERAKASEKAPA 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|17546704|ref|NP_520106.1| tRNA pseudouridine synthase A [Ralstonia solanacearum GMI1000] gi|42559848|sp|Q8XXX8|TRUA_RALSO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17429003|emb|CAD15687.1| probable trna pseudouridine synthase a (trna-uridine isomerasei) (trna pseudouridylate synthaseI protein [Ralstonia solanacearum GMI1000] Length = 274 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTELVRDPFSWVRGTNAFL--PPTVAVRWAQAMPEDFHARFSAHRRTYYYALTYGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G+A + D M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEGKAGYVTLPPGQSLDVTAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSTE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G GK + + + L A+DRK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARDRKAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|146276554|ref|YP_001166713.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] gi|166228756|sp|A4WPU4|TRUA_RHOS5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145554795|gb|ABP69408.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17025] Length = 257 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 163/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQAVLPSVQGAIEAALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALNA+LK ++++ + V + FHARFSAI R YL+R++ R+ Sbjct: 61 VAHCDLGKDWDPFRLAGALNAHLK-PLPVAVVAAARVGEDFHARFSAIERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 AP ++GR W +P LD MR AA HLVGRHDFTTFR+I CQA+SP++T+D Sbjct: 120 APEVHDRGRVWRVPHPLDGAAMREAAAHLVGRHDFTTFRAIGCQAASPVKTLDELTLETV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G R+ ARSFLH Q+RS VG+L+ VG G W +++AL+A+DR CGP+ PP Sbjct: 180 EVPNGVEYRFRLRARSFLHNQVRSIVGTLERVGAGAWAPDRVKEALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLTGVGY 249 >gi|220930998|ref|YP_002507906.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|220931093|ref|YP_002508001.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992308|gb|ACL68911.1| pseudouridylate synthase I [Halothermothrix orenii H 168] gi|219992403|gb|ACL69006.1| pseudouridylate synthase I [Halothermothrix orenii H 168] Length = 246 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 125/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + +EY+G+ Y GWQ Q N +IQG + K +F + V + GA RTD+GVHA Q Sbjct: 3 RNIKITVEYDGTNYSGWQIQNNTPETIQGVLSKCLFDINKSPVKLIGASRTDAGVHARGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + ALN+ L I + V + FHARF A + Y+YRI+ + Sbjct: 63 VANFRLKVGIPVERIPLALNSKL--PPDIVCKDAEEVTEDFHARFDARGKRYIYRILNSE 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + IP +L+ + MR A L+G HDF +F++ + +RTI D+ Sbjct: 121 YPSPFLRNYTYFIPHNLNIDKMREAGSLLIGEHDFASFQASGGSNKTTVRTITKLDIYRD 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I V FL+ +R G+L VG GK T + + L+ +DR G APP GL Sbjct: 181 QYQIKIEVCGNGFLYKMVRIIAGTLIEVGLGKRTVKSVGQLLEIKDRDRAGFTAPPRGLT 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LIEVFY 246 >gi|146320154|ref|YP_001199865.1| tRNA pseudouridine synthase A [Streptococcus suis 98HAH33] gi|253751190|ref|YP_003024331.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|253753091|ref|YP_003026231.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|253754913|ref|YP_003028053.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|166229843|sp|A4VZC6|TRUA_STRS2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145690960|gb|ABP91465.1| Pseudouridylate synthase [Streptococcus suis 98HAH33] gi|251815479|emb|CAZ51057.1| tRNA pseudouridine synthase A [Streptococcus suis SC84] gi|251817377|emb|CAZ55113.1| tRNA pseudouridine synthase A [Streptococcus suis BM407] gi|251819336|emb|CAR44702.1| tRNA pseudouridine synthase A [Streptococcus suis P1/7] gi|319757459|gb|ADV69401.1| tRNA pseudouridine synthase A [Streptococcus suis JS14] Length = 249 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 249 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+G+ Y GWQ+Q N +IQG +E+ + + GE V V G+GRTD+GVHA Q Sbjct: 1 MNYIIWLSYDGTRYDGWQKQGNTEKTIQGKLERVLEKLDGEPVEVRGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L + P + + LN YL + + + FH+R +A+R++Y Y+I Sbjct: 61 VADFQLKGKRAPEEVMEYLNRYLPEDIAVWRIQTAPER--FHSRLNAVRKTYRYQIELGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + LD +M A +L G DF +F S +RT++ Sbjct: 119 KKDVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFCGNKKMKKSTVRTLESIRFERL 178 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I FL +R G+L VG G+ D+ L+A DR+ G APPEGL Sbjct: 179 EDTRLHISFTGNGFLQQMVRILTGTLIEVGQGRRKPEDIRSILEALDRQAAGFTAPPEGL 238 Query: 240 YFDSVEY 246 + + VEY Sbjct: 239 FLEKVEY 245 >gi|210623220|ref|ZP_03293659.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] gi|210153757|gb|EEA84763.1| hypothetical protein CLOHIR_01609 [Clostridium hiranonis DSM 13275] Length = 243 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++YNG+ Y GWQ Q N IQG+IE AI +TGE V ++G+GRTD+GVHAL Q Sbjct: 1 MRNIKITVQYNGANYCGWQEQPNSPGIQGNIEYAIKEITGEKVKINGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + ALN+ L ISI++ V+ +FHAR+SA + Y Y + + Sbjct: 61 VANFKIESQIPVNRIPDALNSKL--PKDISIIDAEEVEDEFHARYSAKGKIYKYLVYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K ++ + LD E M+ A+ L+G +DF F S +RTI + Sbjct: 119 YRNPILKDISYQVKYDLDFEKMKKEAESLIGTYDFCGFMSSGSSVKDTVRTIKSVKIEKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI FL+ +R G+L +G G+ T +E +++QDR + G AP L+ Sbjct: 179 DDLIVFEFEGNGFLYNMVRILSGTLIDIGRGRIT-ESMEDIIKSQDRSKAGHTAPGHALF 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LKKVFY 243 >gi|150005081|ref|YP_001299825.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] gi|149933505|gb|ABR40203.1| tRNA pseudouridine synthase A [Bacteroides vulgatus ATCC 8482] Length = 267 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA + Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMI 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE V + + LN L I++ + V HARF A R+Y Y + TR Sbjct: 71 AHFDYDRELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTR-- 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 127 KDPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVS 186 Query: 182 -NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ Sbjct: 187 GTEWVFIIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALF 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LVDVGY 252 >gi|125623329|ref|YP_001031812.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|166228735|sp|A2RIH1|TRUA_LACLM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124492137|emb|CAL97066.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris MG1363] gi|300070076|gb|ADJ59476.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris NZ9000] Length = 253 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + + + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLR-FGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L+ E M+ A LVG+HDFT F + +RTI ++ Sbjct: 120 VTRSPFHRHSKAYFRYPLNFERMQGAMVKLVGQHDFTGFTASGSSVDDKVRTIYQAEIIQ 179 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PEG Sbjct: 180 LDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEG 239 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 240 LYLKEVKY 247 >gi|312880338|ref|ZP_07740138.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] gi|310783629|gb|EFQ24027.1| tRNA pseudouridine synthase A [Aminomonas paucivorans DSM 12260] Length = 260 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 122/247 (49%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y G+ + G+Q Q N S+QG +E A+ ++G V HGAGRTD+GVHA Q Sbjct: 1 MPRYAAEVAYVGASFAGFQAQPNRPSVQGVLEAALEALSGSPVRCHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL R W P L A+ A+L ++ IL ++ V FHARF A+ R Y + + + Sbjct: 61 VVHFDLPRPWDPFRLRGAMAAHL--PPSVEILQVAQVPDSFHARFDALWREYRFFLWNQA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + W + LD ++ L GRHDF F + RT+ H Sbjct: 119 ACVPHLRPFVWWVKSPLDWTLVQHLLPSLRGRHDFGAFCRSVDRPEDSWRTLLHVSCRRR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R FL +R VG+L+ V G L+ R E G APP+GL+ Sbjct: 179 GPFIRFRFRGDGFLTNMVRILVGTLEGVARGGMEPEAFLNLLEGGCRSEAGRTAPPQGLF 238 Query: 241 FDSVEYS 247 F V Y+ Sbjct: 239 FWRVGYA 245 >gi|154684666|ref|YP_001419827.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens FZB42] gi|166228678|sp|A7Z0S0|TRUA_BACA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154350517|gb|ABS72596.1| TruA [Bacillus amyloliquefaciens FZB42] Length = 247 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ V V+ +GRTDS VHA Sbjct: 1 MRVKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPGEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HLVG HDFT+F + +RTI D Sbjct: 119 KHPDVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFTSFCAADTAVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TVDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEY 246 Y SV Y Sbjct: 239 YLWSVCY 245 >gi|310768198|gb|ADP13148.1| tRNA pseudouridine synthase A [Erwinia sp. Ejp617] Length = 271 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV Sbjct: 11 HKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVADDFHARFSATARRYRYVIYNQRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLIEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|293369414|ref|ZP_06615999.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] gi|292635581|gb|EFF54088.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CMC 3f] Length = 267 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L ISI + V HARF A R+Y Y + T Sbjct: 61 VAHFDSDELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + L+ E M AA+ L +DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|84683526|ref|ZP_01011429.1| tRNA pseudouridine synthase A [Maritimibacter alkaliphilus HTCC2654] gi|84668269|gb|EAQ14736.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2654] Length = 257 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 120/250 (48%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQK+ S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYALKIEYDGRPFSGWQRQKDQPSVQGAVEAALGKLEADVPSIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL ++W P L +ALN +LK + ++VD FHARFSAI R YL+R+I+R+ Sbjct: 61 VATCDLQKDWTPFRLTEALNYHLKPDRVAIV-ACALVDDGFHARFSAIERQYLFRLISRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 APL ++G AW + ++LD + M+ A L+GRHDFTTFRS CQA SP++T+D Sbjct: 120 APLVHDRGNAWRVVQALDADAMQAGADRLIGRHDFTTFRSTMCQADSPVKTLDELRVETL 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL+A+DR CGP+ PP Sbjct: 180 PYPGGTEYRFHVRARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 DGLYLARVGY 249 >gi|42518460|ref|NP_964390.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] gi|51316717|sp|Q74L59|TRUA_LACJO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41582745|gb|AAS08356.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii NCC 533] Length = 263 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNQRTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMKQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLQQVFY 249 >gi|317154696|ref|YP_004122744.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] gi|316944947|gb|ADU63998.1| tRNA pseudouridine synthase A [Desulfovibrio aespoeensis Aspo-2] Length = 258 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 120/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y+G+ + GWQ Q ++QG IE A+ + G V +HGAGRTD+GVHAL Q Sbjct: 1 MPRFLLTLAYDGTDFSGWQLQARDRTVQGVIETALTEIMGSPVRLHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + ALNA L + + +L V FHAR+ A ++Y Y + + Sbjct: 61 TAHFDCQDIRASIPWQCALNARL--PEDVRVLACRRVADDFHARYQAQAKTYEYTLWHTR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ R LD M AA+ L G HDF +F++ S IRT+ + Sbjct: 119 EFCLPQRRRFAWNCGPLDFTAMEAAARLLTGEHDFASFQNTGTPVRSTIRTVTAISRHPG 178 Query: 181 GNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 E R A FL +R+ VG L G G+ + + L A DR APP+G Sbjct: 179 PTPHESVWRFTANGFLKQMVRNLVGCLAACGRGRLAPDEAGRILLAADRALAPATAPPQG 238 Query: 239 LYFDSVEY 246 L SV Y Sbjct: 239 LTLISVAY 246 >gi|328948028|ref|YP_004365365.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] gi|328448352|gb|AEB14068.1| tRNA pseudouridine synthase A [Treponema succinifaciens DSM 2489] Length = 261 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M + + Y+G+ + GWQRQ ++QG IE A+F + V + G+GRTDSG Sbjct: 1 MTNILLTVSYDGTDFCGWQRQDKSDNGSPVRTVQGEIENALFKMLKVPVKLSGSGRTDSG 60 Query: 55 VHALRQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VHA Q A+F+ + +ALN L I IL V+K F +RF A R Y Sbjct: 61 VHAAGQAANFESPIDTIPCENYVRALNGIL--PQDIRILKARKVEKDFSSRFCATSRLYR 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y I T+ P A E W I + + + L G D +F + + S R ID Sbjct: 119 YFIQTKNPPFASESRYRWFISFRPEIDLLNEMCSCLRGEIDCASFAASGDSSLSTKRYID 178 Query: 174 HFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + +L+ ++ A +FL +RS G+L + K + + +K L+++DR + Sbjct: 179 NAFFFWNKENPDLLVFQIEANAFLWKMVRSITGTLIQLAQKKCSPNEFKKILESRDRTKA 238 Query: 231 GPLAPPEGLYFDSVEY 246 G APP GL+ V++ Sbjct: 239 GITAPPTGLFLWEVKF 254 >gi|157363557|ref|YP_001470324.1| tRNA pseudouridine synthase ACD [Thermotoga lettingae TMO] gi|166991166|sp|A8F526|TRUA_THELT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157314161|gb|ABV33260.1| tRNA pseudouridine synthase A [Thermotoga lettingae TMO] Length = 245 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ + G+Q QK+ ++QG E+A+ + + V+ AGRTD+GVHA Q Sbjct: 1 MKRFMAIVSYDGTNFCGFQVQKDVRTVQGMFEQALERILKQRVITIAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD + + A+NA L D I + + VDK FH RF A RR Y Y I Q Sbjct: 61 IVCFDCYLDIDEESMKNAMNANL--PDDIYVRKVVEVDKNFHPRFDAKRRIYHYLIYNSQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW P L+ MR AA+ G HDF +F + +RTI V Sbjct: 119 EPNLFIRNYAWWFPYKLNICKMREAAKFFEGEHDFRSFMKSGDHRENTVRTIYRVRVLQL 178 Query: 181 GNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I IRV RSFL +R+ VG+L VG G+W D+ + L+ +DR + APP GL Sbjct: 179 RGGIILIRVEGRSFLRRMVRNMVGALVKVGVGEWKPEDISRVLELKDRSKAAVTAPPHGL 238 Query: 240 YFDSVEY 246 Y +V++ Sbjct: 239 YLYAVDF 245 >gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047] Length = 269 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 138/246 (56%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + IEY+GSGY GWQ Q + ++Q +E A+ + V V AGRTD+GVHA Q Sbjct: 9 TRVALGIEYHGSGYNGWQAQNHESITVQCELESALSKIADAPVRVFCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+++ + N +L D+I + V + FHARFSA+ R Y+Y I Sbjct: 69 VVHFDVLKPRTENAWVRGTNTHL--PDSIRVRWAKFVPEDFHARFSAMARRYIYVIENTP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD E M++AA +LVG HDF+++R++ CQA S I+T+ H V Sbjct: 127 VHSAIMNKHFSFEDRPLDVERMQLAANYLVGEHDFSSYRTVRCQAKSAIKTVHHLKVERH 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI I + A +FLH +R+ G L +VG GK ++ L A+DR G APP GLY Sbjct: 187 GSLIAIDIYANAFLHHMVRNVAGVLMMVGMGKAEPVWAKQVLDARDRTVGGVTAPPNGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LVGVDY 252 >gi|319942390|ref|ZP_08016704.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] gi|319804078|gb|EFW00986.1| pseudouridylate synthase [Sutterella wadsworthensis 3_1_45B] Length = 269 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY G+ + GWQ Q + S+Q ++E A+ + V AGRTD+GVHA QV Sbjct: 11 LALGIEYRGTAFNGWQVQPDHPSVQAALEAALSQFADHPISVICAGRTDTGVHATHQVVS 70 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F V + +NA L S + + VD++FHARFSA R+Y Y I Sbjct: 71 FTSVARRPSAGWIRGVNAILPESVAVRWM--REVDEKFHARFSARSRTYEYWIWNDPVRS 128 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L +G A + + LD M+ A L+G HDFT+FR+ CQA +P+RTI + G L Sbjct: 129 PLFEGSAGWVFRPLDEALMQRGATALIGEHDFTSFRASECQAKTPVRTISELKIVRRGAL 188 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + +R+ A +FL +R+ VG+L VG G+ + + L A+ R P P GLY Sbjct: 189 VGVRITANAFLQHMVRNIVGALIYVGTGRERPEWIAEVLAAKSRDAAAPTFSPAGLYLTG 248 Query: 244 VEY 246 V Y Sbjct: 249 VGY 251 >gi|116628993|ref|YP_814165.1| tRNA pseudouridine synthase A [Lactobacillus gasseri ATCC 33323] gi|238853452|ref|ZP_04643830.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] gi|116094575|gb|ABJ59727.1| Pseudouridylate synthase [Lactobacillus gasseri ATCC 33323] gi|238833892|gb|EEQ26151.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 202-4] Length = 264 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 128/252 (50%), Gaps = 8/252 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Sbjct: 1 MMTTRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHA 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 61 KGQVIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 119 DQHRFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVN 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + I + FL+ +R VG+L +G+ K D+ + L A+DR+E A Sbjct: 179 ITSDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY V Y Sbjct: 239 PASGLYLQHVFY 250 >gi|260426957|ref|ZP_05780936.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] gi|260421449|gb|EEX14700.1| tRNA pseudouridine synthase A [Citreicella sp. SE45] Length = 255 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 110/250 (44%), Positives = 154/250 (61%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGGPFAGWQRQADQPSVQGAIEAALARLEPREHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK + ++ D +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDMAKPWDPFRLSEALNFHLKPAPVAIRACAAVAD-DWHARFSAVERRYTFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP LE G+ W + LD M+ A HL+G HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLDLGAMQEGAAHLLGLHDFTTFRSTMCQAASPVKTLDEIRIEEC 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ PP Sbjct: 180 DTGAGPEYRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVKHALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 DGLYLTGVGY 249 >gi|228898895|ref|ZP_04063177.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] gi|228963242|ref|ZP_04124411.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228796500|gb|EEM43939.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar sotto str. T04001] gi|228860795|gb|EEN05173.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 4222] Length = 252 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|225867856|ref|YP_002743804.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] gi|259550446|sp|C0MFQ1|TRUA_STRS7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225701132|emb|CAW98001.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus] Length = 249 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEAAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|317123065|ref|YP_004103068.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] gi|315593045|gb|ADU52341.1| tRNA pseudouridine synthase A [Thermaerobacter marianensis DSM 12885] Length = 298 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 113/243 (46%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+G+ + GWQRQ ++Q +E A+ + G V V AGRTD+GVHA QV H Sbjct: 46 LRAVLAYDGTDFAGWQRQPRQRTVQQVVEDALERLLGHPVRVTAAGRTDAGVHARAQVIH 105 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + L AL L + + FHAR+SA R++Y Y + P Sbjct: 106 WRTPRPFPVDRLVPALRGLL--PADVVAVEAGEAPPGFHARYSARRKTYAYHVWRDPVPD 163 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + W +P LD + M AA+ L G HDF F++ RT+ V G L Sbjct: 164 PLHRRWQWHLPLDLDVDAMVEAARRLEGTHDFAPFKAAGSPVRRTRRTLYRCAVEERGPL 223 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A FL R VG+L +G G+W + +E L R GP AP GL Sbjct: 224 LRFVLEADGFLMHMARGIVGTLVEIGRGRWQADRVEAILAEGRRDLAGPTAPAHGLVLWQ 283 Query: 244 VEY 246 V Y Sbjct: 284 VVY 286 >gi|114763999|ref|ZP_01443240.1| tRNA pseudouridine synthase A [Pelagibaca bermudensis HTCC2601] gi|114543591|gb|EAU46605.1| tRNA pseudouridine synthase A [Roseovarius sp. HTCC2601] Length = 255 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 112/251 (44%), Positives = 155/251 (61%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYDGRPFAGWQRQADQPSVQGAIEAALARLEKRDHTIAAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK + ++ D +HARFSA R YL+R++ R+ Sbjct: 61 VAHCDMEKAWDPFRLSEALNFHLKPAPVAIRACAAVSD-DWHARFSAHERRYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP LE G+ W + L E MR A HL+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATLEAGQVWRVMNPLSLEAMRAGAAHLIGQHDFTTFRSTMCQAASPVKTMDEIRIEQT 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ARSFLH Q+RS VG+L+ VG G W D+ AL+A+DR CGP+ PP Sbjct: 180 DTGAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVCPP 239 Query: 237 EGLYFDSVEYS 247 +GLY V Y+ Sbjct: 240 DGLYLMGVGYA 250 >gi|83718190|ref|YP_438876.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|167621345|ref|ZP_02389976.1| tRNA pseudouridine synthase A [Burkholderia thailandensis Bt4] gi|257141962|ref|ZP_05590224.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] gi|123753984|sp|Q2T7H3|TRUA_BURTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83652015|gb|ABC36079.1| tRNA pseudouridine synthase A [Burkholderia thailandensis E264] Length = 270 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD + MR AA+HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAARAGWVHTPLDVDAMREAAEHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPASWLAEVLESRDRGCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|311111209|ref|ZP_07712606.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] gi|311066363|gb|EFQ46703.1| tRNA pseudouridine synthase A [Lactobacillus gasseri MV-22] Length = 263 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 121 RFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITS 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP Sbjct: 181 DPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLQHVFY 249 >gi|187933357|ref|YP_001884507.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] gi|238691608|sp|B2TIK9|TRUA_CLOBB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187721510|gb|ACD22731.1| tRNA pseudouridine synthase A [Clostridium botulinum B str. Eklund 17B] Length = 244 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +EKAI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQIKDRTVQGCLEKAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D I+++ VD FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDIAVIKSEEVDMDFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+ K + K L+ E+M+ A + +G+HDF F S A + +RTI F + Sbjct: 119 EKLSFGKQYVHHVRKELNVEDMKKACECFIGKHDFKAFMSPGSSAKTTVRTIQEFYIEKN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+I + A FL+ +R VG+L +G GK D++ + RK G PP GL Sbjct: 179 EDVIKIFISADGFLYNMVRIIVGTLINIGTGKTKLEDVDNIINDGIRKRSGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|332992505|gb|AEF02560.1| tRNA pseudouridine synthase A [Alteromonas sp. SN2] Length = 263 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ GWQRQK+ +S+Q +EKA+ ++ + ++V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGASVHGWQRQKDVASVQEYLEKALTVIANKPIIVFCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD E +NA + DTI++ V FHARFSA R Y Y I + Sbjct: 61 IVHFDSDVERPERAWTLGINAN--MPDTIAVTWAKPVSDDFHARFSATHRRYRYVIYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD E M AAQ LVG HDFTTFR+ CQ+ +P RT+ V+ Sbjct: 119 MRPAILHNGVTHEYRELDAEKMHEAAQALVGEHDFTTFRASLCQSKTPHRTVSSVSVHRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +FLH +R+ GSL +G G+ + L +DR + A P GLY Sbjct: 179 GRYVVLDIRANAFLHHMVRNITGSLLCIGAGEQPVDWMAHLLTLKDRAKAATTAKPNGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVTY 244 >gi|332685695|ref|YP_004455469.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] gi|332369704|dbj|BAK20660.1| tRNA pseudouridine synthase A [Melissococcus plutonius ATCC 35311] Length = 257 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q Q NG ++Q +EK ++ + + + + G+GRTD+GVHAL Sbjct: 1 MPRYKAIIAYDGTNFNGFQSQINGRTVQDELEKTLYKLNNNQSITIFGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ++ L AL+ + IS+ + V FHAR+ I ++Y ++I T Sbjct: 61 QVIHFDYLKARDVEKLRFALDT--QSPADISVKKIEEVSNNFHARYHVIEKTYQFKIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P S+D + A L+G HDFT+F + C S IRTI V+ Sbjct: 119 KTRDPFRRFYASYFPHSIDLAKIEKALPDLLGEHDFTSFCAAGCSVDSKIRTIYEASVSQ 178 Query: 180 F-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I FL+ +R VG+L +G GK T + + + ++R+ GP A PEG Sbjct: 179 TSEDEIIFTFRGNGFLYKMVRIIVGTLLKIGQGKIKETAIPEIIAGKNRRLAGPTAHPEG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLVQVIY 246 >gi|300114593|ref|YP_003761168.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] gi|299540530|gb|ADJ28847.1| tRNA pseudouridine synthase A [Nitrosococcus watsonii C-113] Length = 259 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLERALSTVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L ++IL V++ FHARFSAI R Y Y ++ R+ Sbjct: 61 VHFDTTTFRLEHHWVFGGNANL--PPEVAILWAQPVNEAFHARFSAIARHYRYIVLNRRT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R + L M+ A LVG HDF++FR+ CQA SP+R + H +V G Sbjct: 119 RPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHHLEVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ G L +G G+ E+ LQA+ R G A P+GLY Sbjct: 179 DWIIMDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARPDGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|313891575|ref|ZP_07825185.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|313120034|gb|EFR43216.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] Length = 244 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + L + L LN L D I I + V+++FH+RF A + Y Y + Sbjct: 61 VVNVHLPYDLNAENLKNELNEIL--PDDIYIKQCTEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKNFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|261868098|ref|YP_003256020.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413430|gb|ACX82801.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 261 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI +V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVVANEDIGIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y + + Sbjct: 61 LHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPQGVTHYHLELDHQLMHGAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G ++ L+ +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWMKWLLEQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVIY 243 >gi|332559018|ref|ZP_08413340.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] gi|332276730|gb|EGJ22045.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides WS8N] Length = 255 Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 122/250 (48%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLARDWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLTGVGY 249 >gi|15616818|ref|NP_240030.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11135207|sp|P57295|TRUA_BUCAI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25292033|pir||D84953 pseudouridylate synthase (EC 4.2.1.70) [imported] - Buchnera sp. (strain APS) gi|10038881|dbj|BAB12916.1| pseudouridylate synthase I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 266 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKILPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMNFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|227515518|ref|ZP_03945567.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] gi|227086131|gb|EEI21443.1| tRNA-pseudouridine synthase I [Lactobacillus fermentum ATCC 14931] Length = 258 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q +E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQVLERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ASGLYLVEVTY 249 >gi|86139183|ref|ZP_01057753.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] gi|85824027|gb|EAQ44232.1| tRNA pseudouridine synthase A [Roseobacter sp. MED193] Length = 258 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 160/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE+A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEEALAKLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + W P L +ALN +LK ++I++ ++VD ++HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKPWSPFRLSEALNFHLK-PAPVAIVDCAVVDPEWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD E M+ A HL+G HDFTTFRS CQA SP +T+D + Sbjct: 120 APATHDAGQVWQINNDLDVERMQQGANHLLGNHDFTTFRSSICQAQSPQKTLDELRIERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + V ARSFLH Q+RSFVG+L+ VG WT D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGADAWTPQDVKSALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|296877377|ref|ZP_06901416.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] gi|296431616|gb|EFH17424.1| tRNA-pseudouridine synthase I [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V VHGAGRTDSGVHAL Sbjct: 4 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I + + V FH+R+ ++Y + + Sbjct: 64 QVIHFDLPQERDEEKLRFALDT--QTPEDIDFIRVEQVAADFHSRYKKHSKTYEFIVDYG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 122 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 181 Query: 180 FGNLI--EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ QIR+ VG+L +G+ + ++ L+ +DR GP A P Sbjct: 182 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEQKDRNLAGPTAAPN 241 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 242 GLYLKEIRY 250 >gi|160891004|ref|ZP_02072007.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|317480950|ref|ZP_07940030.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] gi|156859225|gb|EDO52656.1| hypothetical protein BACUNI_03451 [Bacteroides uniformis ATCC 8492] gi|316902843|gb|EFV24717.1| tRNA pseudouridine synthase A [Bacteroides sp. 4_1_36] Length = 250 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 A + + + ++ D E M AAQ L DFT+F +H + I H Sbjct: 117 AKMPFNRQYRCRLFQTPDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTRV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVESFRRVIEQKDRCQAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVAY 243 >gi|115522681|ref|YP_779592.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] gi|122297686|sp|Q07TX2|TRUA_RHOP5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115516628|gb|ABJ04612.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisA53] Length = 246 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 132/246 (53%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q+NG SIQG++E A + GE + V GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGTPYCGWQIQENGPSIQGALEDAAKAICGEAIRVRGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ ++ P L ALNA+L+ I ++ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDVPKQLPPGRLRDALNAHLR-PQPIGVITAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL RAW +P+ LD + M AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALAINRAWRVPRRLDSDAMHEAAQRLIGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDEIRIVTSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARSRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|300024227|ref|YP_003756838.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] gi|299526048|gb|ADJ24517.1| tRNA pseudouridine synthase A [Hyphomicrobium denitrificans ATCC 51888] Length = 246 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 132/246 (53%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ G SIQG++E AI +GE V GAGRTD+GVHAL Q Sbjct: 1 MPRYRITIEYDGTPFIGWQRQAEGVSIQGALETAIRKFSGEAPGVRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + W P + A+N +L+ + I ++ + VD F ARFSA++R Y YR++TR+ Sbjct: 61 VAHFDLEKTWEPGRIRDAMNFHLR-PNPIGVVAAAQVDDAFDARFSAVKRYYEYRLLTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP L++ R W ++LD M AAQ LVG+HDFTTFR+ CQA SP++T+D FDV+ Sbjct: 120 APPILQRHRVWWTMQNLDAAAMHAAAQELVGKHDFTTFRAAQCQAKSPVKTLDVFDVSRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I RV ARSFLH Q+RS VGSLKLVG+GKW+ DL AL A +R+ CGP+AP GLY Sbjct: 180 GEEIVCRVSARSFLHHQVRSMVGSLKLVGEGKWSRADLASALAAANREACGPVAPAAGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVGVDY 245 >gi|237746730|ref|ZP_04577210.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] gi|229378081|gb|EEO28172.1| tRNA pseudouridine synthase A [Oxalobacter formigenes HOxBLS] Length = 264 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 135/247 (54%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+G+ GWQ Q +G ++Q +E AI T + AGRTD+GVHA Q Sbjct: 4 MKRIALGIEYDGTGWRGWQTQPDGMTVQDQLEAAIRQFTRMDMATTCAGRTDAGVHATEQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITR 119 V H D E +PV + +N+YL S + K FHAR SAI R Y Y + Sbjct: 64 VVHLDTGLERLPVSWVRGINSYLPSSIAVRWACEVPGGKDGFHARSSAIARRYRYLVYNS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L K RA + + LD E MR A L+G HDF+ FR+ CQ+ +P++T++ + Sbjct: 124 PVRSPLWKNRAGWVFRPLDLEWMREGAGFLLGEHDFSAFRAAECQSITPVKTMNGIGIEK 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNLI A +FLH IR+ VGSL +VG G +++ L+++DR + P P+GL Sbjct: 184 QGNLIVFTFEANAFLHHMIRNIVGSLIVVGKGNRPPKWMKELLESRDRSQAAPTFMPDGL 243 Query: 240 YFDSVEY 246 Y V Y Sbjct: 244 YLSRVFY 250 >gi|312868117|ref|ZP_07728321.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|322390938|ref|ZP_08064444.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] gi|311096521|gb|EFQ54761.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis F0405] gi|321142313|gb|EFX37785.1| tRNA pseudouridine synthase A [Streptococcus parasanguinis ATCC 903] Length = 248 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + S+Q IEK + + G V VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGTLFAGFQRQPHARSVQEEIEKTLTRLNQGTPVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I + + V+ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQARDEEKLRFALDT--QTPEDIDFIRVEQVEDDFHSRYKKHSKTYEFIVDYG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD E M+ A Q L G HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDVEKMQAAIQKLEGTHDFTGFTASGTSVEDKVRTITEARLVE 178 Query: 180 FGNLI--EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FL+ QIR+ VG+L +G+ + ++ L+ +DR GP A P Sbjct: 179 DAEHHRLVFTFSGNGFLYKQIRNMVGTLLKIGNDRMPIEQIDLILEKKDRNLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC 3626] Length = 248 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+GS Y GWQ+Q N S++Q +EK + +T E + + G GRTDSGVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A VA+F + + +N YL + I + + ++FHARF+ ++Y Y I Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYL--PEDIRVTEIREASERFHARFNVKSKTYEYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + AW + + LD E M A++L+G HDF +F S+ + S +RTI+ + Sbjct: 119 DNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + N++ I++ FL +R VG+L VG GK + L+A++R + AP Sbjct: 179 FHENNNILSIKINGNGFLLNMVRIIVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPS 238 Query: 237 EGLYFDSVEY 246 GL + Y Sbjct: 239 HGLCLLELNY 248 >gi|58617163|ref|YP_196362.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] gi|62901148|sp|Q5FGS1|TRUA_EHRRG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58416775|emb|CAI27888.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Gardel] Length = 246 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 107/247 (43%), Positives = 157/247 (63%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSNFIGWQKQNHNSNSIQEILEKAIFKFSKQHVTVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L + + D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHLISHAIAVVH-VEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SP++T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPVKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|52078642|ref|YP_077433.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|52784004|ref|YP_089833.1| tRNA pseudouridine synthase A [Bacillus licheniformis ATCC 14580] gi|319649083|ref|ZP_08003291.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] gi|62901269|sp|Q65P74|TRUA_BACLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52001853|gb|AAU21795.1| pseudouridylate synthase I [Bacillus licheniformis ATCC 14580] gi|52346506|gb|AAU39140.1| TruA [Bacillus licheniformis ATCC 14580] gi|317388783|gb|EFV69602.1| tRNA pseudouridine synthase A [Bacillus sp. BT1B_CT2] Length = 247 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 136/247 (55%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R I Y+G ++G+Q Q +IQ +EKA+ + E + V +GRTDSGVHA+ Sbjct: 1 MRMKCTISYDGHLFYGYQVQPGQRTIQDELEKALQTLHKAKERIPVVSSGRTDSGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD ALNA L D IS+ V+ QFHARFSA R+ Y Y I Sbjct: 61 QTIHFDSPLSIPEAKWPYALNALL--PDDISVRKAEAVNDQFHARFSAKRKEYRYMIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ +P LD E ++ A+++LVG HDFT+F + + +RT+ + + Sbjct: 119 RHPDVFKRYYAYHVPYDLDMEKVKEASRYLVGTHDFTSFCATKTEVKDKVRTVHELEWSD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+V FL+ +R G+L VG GK++ D+EK + A++R G AP GL Sbjct: 179 TGDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGRTAPAHGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWRVIY 245 >gi|312874027|ref|ZP_07734062.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|312874727|ref|ZP_07734746.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|325912360|ref|ZP_08174756.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|329920629|ref|ZP_08277316.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] gi|311089472|gb|EFQ47897.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2053A-b] gi|311090367|gb|EFQ48776.1| tRNA pseudouridine synthase A [Lactobacillus iners LEAF 2052A-d] gi|325475831|gb|EGC79001.1| tRNA pseudouridine synthase A [Lactobacillus iners UPII 143-D] gi|328935887|gb|EGG32347.1| tRNA pseudouridine synthase A [Lactobacillus iners SPIN 1401G] Length = 260 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I+ Y+G+ + G+Q+Q N +IQG IE A+ +T G+ V+VHG+GRTD+GVHA Sbjct: 1 MQRYKLILAYDGTLFHGFQKQPNQRTIQGVIEDALLKMTKGKHVIVHGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD +P ALNA + I L+ +V+ FH ++S + Y Y I Sbjct: 61 QVIHFDYPGNVIPAKNMLLALNAL--MPRDIIFLDSELVNDDFHVQYSTKAKWYRYIINQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + P LD M+ AA +L+G+HDFT+F + Q +RTI + ++ Sbjct: 119 SRFTDPFRRNYTGHCPYKLDMLKMKKAATYLLGKHDFTSFAASGGQIVDKVRTIFYINLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + V+ FL+ +R G L +G G+ D+EK + A++R++ AP G Sbjct: 179 QHGDEIVLDVIGDGFLYNMVRIITGLLIDIGHGQKEVEDVEKIILAKNRQQVRNTAPASG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLYHVFY 246 >gi|325523908|gb|EGD02125.1| tRNA pseudouridine synthase A [Burkholderia sp. TJI49] Length = 270 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQNALEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA+L S + + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREPFSWVRGTNAFLPPSVAVQW--AKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDRRAGWIHTPLDDDAMRTAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWMAAVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|259907892|ref|YP_002648248.1| tRNA pseudouridine synthase A [Erwinia pyrifoliae Ep1/96] gi|224963514|emb|CAX55004.1| tRNA pseudouridylate synthase I [Erwinia pyrifoliae Ep1/96] gi|283477767|emb|CAY73683.1| pseudouridylate synthase I [Erwinia pyrifoliae DSM 12163] Length = 271 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +EKA+ V + V AGRTD+GVH QV Sbjct: 11 HKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADRPIAVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V FHARFSA R Y Y I ++ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVADDFHARFSATARRYRYVIYNQRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H V+ G Sbjct: 129 RPAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVMHLKVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELLVAKDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|329666723|gb|AEB92671.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii DPC 6026] Length = 263 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 128/249 (51%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFESEIVDEDFHVQYSTKGKWYRYIVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +S I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DSDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLQQVFY 249 >gi|332798239|ref|YP_004459738.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] gi|332695974|gb|AEE90431.1| tRNA pseudouridine synthase A [Tepidanaerobacter sp. Re1] Length = 243 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++EY G+ Y GWQRQKN SIQ +E AI +TGE V V G+GRTD+GVHAL QV Sbjct: 1 MNVKILLEYEGTAYSGWQRQKNAISIQEVLENAIKSITGEAVNVIGSGRTDAGVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + L A+N+ L + I + + IV + FHARF A + Y Y I + Sbjct: 61 ANFKTQTKIPIEKLPYAINSKL--PEDIVVKHAEIVPEDFHARFWAKAKIYTYTIYNAKF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L K ++ P+ L+ M+ AA L+G HDF +F + + S +R I+ +V G Sbjct: 119 PSPLLKRYSYFYPRPLNVRAMKKAADMLIGTHDFASFMASNSPVKSTVRCIERLEVFQNG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++++ + A FL+ +R G+L VG K + D+ ++++DR G PP+GL Sbjct: 179 DIVKFEIEANGFLYNMVRIIAGTLLDVGINKKKANDIISIIKSKDRSMAGKTLPPQGLCL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 IKVIY 243 >gi|289167524|ref|YP_003445793.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] gi|288907091|emb|CBJ21925.1| tRNA pseudouridine synthase A [Streptococcus mitis B6] Length = 249 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + E + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKEQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYTKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E MR A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|312144215|ref|YP_003995661.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] gi|311904866|gb|ADQ15307.1| tRNA pseudouridine synthase A [Halanaerobium sp. 'sapolanicus'] Length = 248 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 122/246 (49%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + +EY+GS Y GWQRQKN +IQ +E A+ + V V G+GRTD+GVHA Q Sbjct: 4 NYKITLEYDGSNYSGWQRQKNTKETIQEKLENALSKINKNKVEVIGSGRTDAGVHAAGQT 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L + + A+N +L D I V K FHAR+ A + Y YRI+ Sbjct: 64 ANFFLDIQIPTYKIPIAINTHL--PDDIICYKAEKVAKDFHARYDARGKKYRYRILNSNF 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-SF 180 + + + + LD + M+ A+ +G HDF F S S IR I FD+N Sbjct: 122 NSVFVRNYVYKVHQRLDLDIMQKGAKIFLGSHDFAAFCSAGSSVDSTIREIYSFDINSKT 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + FL+ +R VG+L + GK DLE+ L R+ G AP +GL Sbjct: 182 NGEIQIDISGSGFLYNMVRILVGTLIELAKGKRNLADLEEILAGTQRERAGFTAPAKGLT 241 Query: 241 FDSVEY 246 V Y Sbjct: 242 LLEVFY 247 >gi|311086513|gb|ADP66594.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 266 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|228905939|ref|ZP_04069836.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] gi|228853754|gb|EEM98514.1| tRNA pseudouridine synthase A [Bacillus thuringiensis IBL 200] Length = 252 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPNSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWEVNYN 251 >gi|168187780|ref|ZP_02622415.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169294335|gb|EDS76468.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 246 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++IEY+GS Y GWQ+QK+ ++Q IE+AIF +T + + + G RTD+GVHA Sbjct: 1 MKRNIKLVIEYDGSNYSGWQKQKHSMTVQQRIEEAIFDITKQNIEIIGCSRTDAGVHARN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + P A+N+ L I I V FHARF + + Y+Y I+ R Sbjct: 61 FVANFIIDSNIPPEKFKYAINSKL--PKDIVIKKSCEVPIDFHARFQSKGKKYVYTILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +++G + K LD + M+ A+++ + + ++ S +RTI + DV Sbjct: 119 EEPPTIDRGVVYHFNKKLDVDLMKSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++I+I V+ FL+ +R G+L VG + D++ + A+DR+ G PP+G Sbjct: 179 KVDDIIKIIVIGEGFLYNMVRIMAGTLVEVGITRIKPEDIKTIILAKDRERAGRSLPPQG 238 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 239 LCLEEVLY 246 >gi|219681571|ref|YP_002467957.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682129|ref|YP_002468513.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471256|ref|ZP_05635255.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254789608|sp|B8D8Z8|TRUA_BUCA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789609|sp|B8D7A3|TRUA_BUCAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219621862|gb|ACL30018.1| pseudouridylate synthase I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624414|gb|ACL30569.1| pseudouridylate synthase I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085941|gb|ADP66023.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087094|gb|ADP67174.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087644|gb|ADP67723.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 266 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 139/243 (57%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + +EY+GS Y GWQRQK SIQ IEKA+ ++ + V AGRTD+GVH++ QV H Sbjct: 9 FALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQVIH 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +N+YL S+ IS++ + V + FHAR+SAI RSY Y I Sbjct: 69 FKTTANRKKSSWSIGVNSYL--SENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLRS 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + I + L+ + M AQ L+G HDFT+FR++ CQ+ SP R I +V F N Sbjct: 127 AIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHNW 186 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A SFLH +R+ VGSL VG K ++ L+ +DR G AP +GLY Sbjct: 187 VVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLVY 246 Query: 244 VEY 246 VEY Sbjct: 247 VEY 249 >gi|229009651|ref|ZP_04166877.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] gi|229131150|ref|ZP_04260062.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|229165130|ref|ZP_04292925.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228618393|gb|EEK75423.1| tRNA pseudouridine synthase A [Bacillus cereus AH621] gi|228652363|gb|EEL08288.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST196] gi|228751673|gb|EEM01473.1| tRNA pseudouridine synthase A [Bacillus mycoides DSM 2048] Length = 252 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|324989944|gb|EGC21886.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK353] Length = 249 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPDERDEEKLRFALDT--QTPEDIDFISVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L+ + A L G HDFT F + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITDAKVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTADPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|75764616|ref|ZP_00744060.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487896|gb|EAO51668.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 264 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPKHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 78 QVIHFDTPLSLEEWQWNNALNTML--PDDIVIRRVEKKTEEFHARYGVEKKEYRYRVLLS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 136 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 195 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 196 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 255 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 256 YLWEVNYN 263 >gi|311070796|ref|YP_003975719.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] gi|310871313|gb|ADP34788.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942] Length = 247 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 ++ I Y+G + G+Q Q ++Q +EKA+ ++ + V V +GRTDSGVHA Sbjct: 1 MKMKCTISYDGHLFNGYQVQPGKRTVQAELEKALAILHKSEDKVPVISSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L I++ D FHARFSAI++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PGDIAVKTAEHADDGFHARFSAIKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HL+G HDFT+F S + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQKMREASEHLIGTHDFTSFCSANTEVRDKVRTIYELDWTD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+V FL+ +R G+L VG GK+++ D++ L A+DR+ G AP GL Sbjct: 179 TDDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKFSADDVKGMLDAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLWHVYY 245 >gi|116511297|ref|YP_808513.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. cremoris SK11] gi|123320604|sp|Q031N1|TRUA_LACLS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106951|gb|ABJ72091.1| Pseudouridylate synthase [Lactococcus lactis subsp. cremoris SK11] Length = 253 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + + + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLNGKARDLERLR-FGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L+ E M+ A LVG+HDFT F + +RTI ++ Sbjct: 120 VTRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAEIIQ 179 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PEG Sbjct: 180 LDKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEG 239 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 240 LYLKEVKY 247 >gi|118444045|ref|YP_877232.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134501|gb|ABK61545.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 246 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++IEY+GS Y GWQ+QK+ +IQ IE+AIF +T + + V+G RTD+GVHA V Sbjct: 3 KNIKLVIEYDGSNYSGWQKQKHSMTIQQRIEEAIFDITKQKIEVNGCSRTDAGVHARNFV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + P A+N+ L I I N V FHARF + + Y+Y I+ R+ Sbjct: 63 ANFIIDSSIPPEKFKYAMNSKL--PKDIVIKNSCEVPMDFHARFQSKGKKYVYTILNREE 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +++G + K LD + MR A+++ + + ++ S +RTI + DV Sbjct: 121 PPTIDRGVVYHFNKKLDVDLMRSASKYFIGSHEFDSFYKKAGSSVKSTLRTIYYCDVTKV 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+I V+ FL+ +R G+L VG + D++ + A+DR++ G PP+GL Sbjct: 181 DDIIKIIVIGEGFLYNMVRIIAGTLVEVGIARIKPEDIKNIILAKDREKAGRSLPPQGLC 240 Query: 241 FDSVEY 246 + V Y Sbjct: 241 LEEVLY 246 >gi|77464142|ref|YP_353646.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides 2.4.1] gi|123591335|sp|Q3J0D9|TRUA_RHOS4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77388560|gb|ABA79745.1| tRNA pseudouridine synthase [Rhodobacter sphaeroides 2.4.1] Length = 255 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 123/250 (49%), Positives = 163/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP++PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLTGVGY 249 >gi|89890586|ref|ZP_01202096.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89517501|gb|EAS20158.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 251 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQRQ ++Q +E+ + + E + V GAGRTD+GVHA V Sbjct: 5 KRYFIELAYDGTAYHGWQRQPQSITVQEVLEEGLHKMLREQIKVQGAGRTDAGVHAAYMV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD L LN +L I++ + V HARF A +RSY Y Sbjct: 65 AHFDYSGAIDLDHLVYRLNRWL--PKDIAVYEVKPVVNNAHARFHAYKRSYEYHF--LLR 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +A+++ + D + M+ AA L DF F + + + + Sbjct: 121 PDPFQVMQAYVLFRKPDFKLMQEAAAILPEYKDFECFSRSNTDVKTYVCDLTEAYFEFKD 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L +G GK T DL + + ++DR G AP GL+ Sbjct: 181 HKVIFHITANRFLRNMVRAVVGTLLDIGYGKKTIEDLREIIASKDRSNAGASAPAGGLFL 240 Query: 242 DSVEY 246 + Y Sbjct: 241 TKIHY 245 >gi|315022484|gb|EFT35511.1| tRNA pseudouridine synthase A [Riemerella anatipestifer RA-YM] gi|325335444|gb|ADZ11718.1| Pseudouridylate synthase [Riemerella anatipestifer RA-GD] Length = 246 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MLRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFT-QNSAWGYWRRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL+ Sbjct: 178 GAELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LVDVGYN 244 >gi|148263121|ref|YP_001229827.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] gi|189030134|sp|A5GB00|TRUA_GEOUR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146396621|gb|ABQ25254.1| tRNA pseudouridine synthase A [Geobacter uraniireducens Rf4] Length = 244 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +IIEY+G+ Y GWQ Q NG +IQ IE ++ + GE V +H +GRTD+GVHAL Sbjct: 1 MRQIKLIIEYDGTNYSGWQVQPNGITIQQLIEASLATMLGEPVKLHSSGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + LNA L + I+I + F+ R A + Y Y I Sbjct: 61 VAAFKTGKLLPLRAFSDGLNALL--PNDIAIRDAVEAPLSFNPRADAKSKHYRYTIYNAV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + +LD E M+ AA H VG HDF FR+ +C A + +R + V Sbjct: 119 RRSPLARLSSWHLRGALDIERMQAAASHFVGEHDFAAFRASNCAAKTTVRRLFSVSVAKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I V FL +R G+L VG GK + L + DR G APP+GL Sbjct: 179 GESVIIDVHGSGFLKNMVRIIAGTLAEVGQGKKNPDAVPGLLVSGDRAASGITAPPQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVFY 244 >gi|42779223|ref|NP_976470.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316699|sp|Q73F64|TRUA1_BACC1 RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|42735138|gb|AAS39078.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 247 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWNNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|313207118|ref|YP_004046295.1| tRNA pseudouridine synthase a [Riemerella anatipestifer DSM 15868] gi|312446434|gb|ADQ82789.1| tRNA pseudouridine synthase A [Riemerella anatipestifer DSM 15868] Length = 246 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RYC+ YNG YFG+Q Q S+Q ++E+A+ + E + GAGRTD+GVHA + Sbjct: 1 MSRYCIEFSYNGEKYFGYQIQPKQISVQETLEQALSTILREEIKTTGAGRTDTGVHAKKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +L K LN++L IS+ L V FHARF A R+Y Y I + Sbjct: 61 FAHFDTDLILEEELLPKRLNSFL--PPDISVKRLFRVSSDFHARFDATYRTYEYYISLEK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + L+ E M A + L DFT+F ++ + + I Sbjct: 119 NPFT-QNSAWGYWRRPLNLEAMNEACKILFEYTDFTSFSKLNTDTKTNLCEIYKAFWVQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + A FL +R+ VG++ +G GK DL K ++A++R G AP +GL+ Sbjct: 178 GTELKFTISANRFLRNMVRAIVGTMVDIGSGKIAPQDLRKVIEAKERNAAGTSAPAQGLF 237 Query: 241 FDSVEYS 247 V Y+ Sbjct: 238 LVDVGYN 244 >gi|260662783|ref|ZP_05863677.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] gi|260552864|gb|EEX25863.1| tRNA pseudouridine synthase A [Lactobacillus fermentum 28-3-CHN] Length = 258 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHA 57 M RY + Y+GS + G+Q Q ++Q ++E+A+ + + ++V G+GRTD+GVHA Sbjct: 1 MHRYKITFAYDGSNFAGFQVQPGERTVQQALERAVNKIAKKPQPPLMVFGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFDL + L +ALN+ L + + + V FHARF A + Y YR++ Sbjct: 61 LGQVAHFDLPYQIPGPSLVRALNSSL--PLDVLVKEATEVAPDFHARFDAHHKRYRYRVV 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 + ++ +D E M+ AAQ VG HDFT+F + QA+S +R ID Sbjct: 119 GGEFTNPFKRNYTGHYKYPVDVERMQTAAQDFVGEHDFTSFVASGSQATSNVRRIDEVTV 178 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V FL+ Q+R V L +G+G+ D+ + ++A++R AP Sbjct: 179 VRDEENDEVVFDFVGNGFLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ASGLYLVEVTY 249 >gi|42520874|ref|NP_966789.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] gi|51316700|sp|Q73G93|TRUA_WOLPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42410614|gb|AAS14723.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila melanogaster] Length = 245 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQA++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQAANPIRTIDDIDIIQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILNQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|91204875|ref|YP_537230.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157826493|ref|YP_001495557.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] gi|123266250|sp|Q1RKH3|TRUA_RICBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228758|sp|A8GUM4|TRUA_RICB8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91068419|gb|ABE04141.1| tRNA pseudouridine synthase A [Rickettsia bellii RML369-C] gi|157801797|gb|ABV78520.1| tRNA pseudouridine synthase A [Rickettsia bellii OSU 85-389] Length = 245 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G+ GWQRQ S+Q +E+AI+ +GE V + G+GRTD+GVHA+ Q Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHFDL + + P + +A+N + + + N +VD FHARFSAI R Y+YRI+ R Sbjct: 61 IAHFDLSKYFEPYKIIRAINYF-TRPYIVGVCNCELVDNNFHARFSAIARHYVYRILNRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ R W I LD M+ ++ +L+G+H+FT+FR+ CQ+ SPI+T+ D+ Sbjct: 120 YPSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ A SFLH +R+ VGSL LVG W + +++ L+ DRK GP AP GLY Sbjct: 180 NEEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY 239 Query: 241 FDSVEY 246 F +Y Sbjct: 240 FIKADY 245 >gi|164688053|ref|ZP_02212081.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] gi|164602466|gb|EDQ95931.1| hypothetical protein CLOBAR_01698 [Clostridium bartlettii DSM 16795] Length = 245 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M++EY+GS + G+Q+ K N ++IQG +E + + E + + G+GRTD GVHA Sbjct: 1 MRNIKMVVEYDGSNFKGFQKLKDNENTIQGKLESVLSQMADENIEIIGSGRTDMGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL S I + VD +FH+R++A R+ YLY+I Sbjct: 61 QVVNFKTNSPLSLNKMHKYLYEYLPQSIAIR--EIEEVDDRFHSRYNAKRKVYLYKIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + +PK +D + MR A LVG HDFT+F S + S +R I +N Sbjct: 119 EYPNPFNRKYTCHVPKKIDLDKMRAVADVLVGEHDFTSFCSSRSKKKSHVREIYSISINE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LIEI V FL+ +R G+L G K T +++ L+ +DR + AP +GL Sbjct: 179 NNGLIEIYVEGNGFLYNMVRIIAGTLIDAGHNKITPEEVKNLLELKDRSKSPETAPSKGL 238 Query: 240 YFDSVEY 246 + V+Y Sbjct: 239 FLYRVKY 245 >gi|222093912|ref|YP_002527962.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|221237960|gb|ACM10670.1| tRNA pseudouridine synthase A [Bacillus cereus Q1] Length = 247 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|294141648|ref|YP_003557626.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] gi|293328117|dbj|BAJ02848.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12] Length = 275 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS Y+GWQRQ ++Q +E+A+ V + + VH AGRTD+GVH QV Sbjct: 15 MRVALGIEYDGSKYYGWQRQLEVDTVQAQLERALSKVANQPITVHCAGRTDAGVHGTGQV 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N L D I++ + +VD FHARFSA R Y Y I Sbjct: 75 VHFETTAIRKESAWTLGVNVNL--PDDIAVKWVKLVDDDFHARFSATARRYRYLIYNYHL 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD M AAQH VG HDFT+FR++HCQ+ SP R + +V G Sbjct: 133 RPGILRSGVSHYRGQLDENKMHQAAQHFVGEHDFTSFRALHCQSKSPFRHVHEVNVTRQG 192 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +FLH +R+ VGSL +G G + + L +DR + P A P GLY Sbjct: 193 MYLCVDIKANAFLHHMVRNIVGSLIEIGQGHQQGDWIVELLALKDRSKAAPTAKPNGLYM 252 Query: 242 DSVEY 246 V Y Sbjct: 253 VDVTY 257 >gi|229194532|ref|ZP_04321335.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|228588998|gb|EEK47013.1| tRNA pseudouridine synthase A [Bacillus cereus m1293] gi|324324133|gb|ADY19393.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 252 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|206562845|ref|YP_002233608.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] gi|198038885|emb|CAR54847.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia J2315] Length = 271 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTELEREVFSWVRGTNAFL--PPTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA +L+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAYLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GHFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|167840379|ref|ZP_02467063.1| tRNA pseudouridine synthase A [Burkholderia thailandensis MSMB43] Length = 270 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q S+E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDSLEAALAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L TI++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PSTIAVQWAKPMPDTFHARFAAYERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRTGWVHTPLDIDAMREAAGHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ ++ L L+++DR P PEGLY Sbjct: 179 DFIHFRFRASAFLHHMVRNLMGCLVAVGRGRYPASWLADVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|329121886|ref|ZP_08250501.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|327467824|gb|EGF13316.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 244 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MIIEY+G+ Y GWQ+QK+ ++QG IEKA VTGE V + GAGRTDSGVHA Q Sbjct: 1 MNYKMIIEYDGTRYEGWQKQKHSDETLQGKIEKAFEKVTGENVQIIGAGRTDSGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + L LN L D I I V+++FH+RF A + Y Y + Sbjct: 61 VANVHLPYDLNAENLKNELNEIL--PDDIYIKQCIEVEEKFHSRFHAKSKIYEYNLRIGS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +K W K L E M+ AA+ L G HDFT F + S +RT+ ++++ Sbjct: 119 NKDVFQKRFIWQFAKPLCIEKMKRAAEILQGTHDFTAFCNNKHFKKSAVRTVYSIEISTS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ +R FL IR VG+L VG+ K + L L+++ R G APP+GL Sbjct: 179 NDILHLRFCGDGFLQGMIRIMVGTLVEVGENKRDADSLYDVLKSKQRSNAGFTAPPQGLT 238 Query: 241 FDSVEY 246 SV+Y Sbjct: 239 LISVQY 244 >gi|262277956|ref|ZP_06055749.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] gi|262225059|gb|EEY75518.1| tRNA pseudouridine synthase A [alpha proteobacterium HIMB114] Length = 245 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EYNG+ + GWQ Q +G+++Q IEK+ + + G+GRTDSGVHA Q Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + LN +LK + + + F +R A R+Y Y+I+ R Sbjct: 61 VFHFDYEDKLDCKKILLGLNHFLKKKNISVLSLDF-TNNNFDSRRDAKLRTYTYKILNRI 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + + + W + K+LD + M+ A+Q +G HDFTTFR+ C+A+SPIR I + ++ Sbjct: 120 ASPVILENQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I V +RSFL Q+RS VG++K VG+ KW+ DL++AL++++R C AP GLY Sbjct: 180 NDQIIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLY 239 Query: 241 FDSVEY 246 ++VEY Sbjct: 240 LENVEY 245 >gi|229094864|ref|ZP_04225869.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] gi|229100941|ref|ZP_04231745.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|229113818|ref|ZP_04243253.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228669689|gb|EEL25096.1| tRNA pseudouridine synthase A [Bacillus cereus Rock1-3] gi|228682520|gb|EEL36593.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-28] gi|228688607|gb|EEL42480.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-29] Length = 252 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|206978041|ref|ZP_03238926.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217957717|ref|YP_002336261.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|229136988|ref|ZP_04265615.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] gi|206743754|gb|EDZ55176.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217063029|gb|ACJ77279.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|228646526|gb|EEL02733.1| tRNA pseudouridine synthase A [Bacillus cereus BDRD-ST26] Length = 252 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE++ V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELIRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ +R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINAIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|85713087|ref|ZP_01044122.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] gi|85693073|gb|EAQ31036.1| tRNA pseudouridine synthase A [Idiomarina baltica OS145] Length = 261 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y+GWQRQ+ S+Q +E A+ V + V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGRAYYGWQRQREVDSVQQRLENALSKVADQAVETVCAGRTDAGVHATNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + +N++L I++ VD F ARFSA R Y Y I Sbjct: 61 VHFDVSTQRRAAAWTLGVNSHL--PPDIAVRWAQPVDDSFSARFSATARRYRYIIANHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M+ A L+G HDF+ FR+ CQ+ S R I H +V+ G Sbjct: 119 RPGIHSHGVSHYHHPLDVDAMQAATPALLGEHDFSAFRAAQCQSHSAHREITHLNVHRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL ++G + + L + L +DR + A P GLY Sbjct: 179 DFIIVDIKANAFLHHMVRNIVGSLIVIGRHQQDPSWLGELLAGKDRTKAAATAKPGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|298482201|ref|ZP_07000389.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] gi|298271758|gb|EFI13331.1| tRNA pseudouridine synthase A [Bacteroides sp. D22] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L ISI + V HARF A R+Y Y + T Sbjct: 61 VAHFDFDEPLDEISVADKLNRLL--PPDISIYRVCRVRPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|293364991|ref|ZP_06611708.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307703239|ref|ZP_07640185.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|291316441|gb|EFE56877.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] gi|307623314|gb|EFO02305.1| tRNA pseudouridine synthase A [Streptococcus oralis ATCC 35037] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|237715548|ref|ZP_04546029.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262408556|ref|ZP_06085102.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|294643196|ref|ZP_06721024.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294809320|ref|ZP_06768031.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] gi|229444257|gb|EEO50048.1| tRNA pseudouridine synthase A [Bacteroides sp. D1] gi|262353421|gb|EEZ02515.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_22] gi|292641462|gb|EFF59652.1| tRNA pseudouridine synthase A [Bacteroides ovatus SD CC 2a] gi|294443478|gb|EFG12234.1| tRNA pseudouridine synthase A [Bacteroides xylanisolvens SD CC 1b] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ + V+ HARF A R+Y Y + T Sbjct: 61 VAHFDFDELLDEVSVADKLNRLL--PPDISVYRVCRVNPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + W + LD M AA+ L DFT+F +H + I I H + Sbjct: 117 SKYPFNRQYRWRVYNQLDYALMNEAARTLFEYTDFTSFSKLHTDVKTNICHITHAEWTQE 176 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L Sbjct: 177 DDATWVFTIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRVIEQQDRCKAGTSAPGQAL 236 Query: 240 YFDSVEY 246 + +VEY Sbjct: 237 FLVNVEY 243 >gi|229153920|ref|ZP_04282050.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] gi|228629601|gb|EEK86298.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 4342] Length = 252 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|332827815|gb|EGK00550.1| tRNA pseudouridine synthase A [Dysgonomonas gadei ATCC BAA-286] Length = 254 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + V + GAGRTD+GVHA Sbjct: 1 MKRYFIYLSYNGEKYCGWQIQPNGVSVQETIEKALSTLLRMPVSIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD +E ++L LN+ L I+I + V HARF A R Y Y I T Sbjct: 61 TAHFDSEQEITDLLLLANKLNSLL--PKDIAIQKIIEVKPDAHARFDAESRLYRYYITTD 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + I + D E M A+ L DFT+F +H + TI Sbjct: 119 --KDPFLHHLKYKIYGNPDIEIMNACAKVLFDYEDFTSFSKLHTDVKTNNCTIMLARWEQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK T+ D + ++A+DR + G P L Sbjct: 177 AGNDYIFTIKANRFLRNMVRSIVGTLLEAGRGKITTDDFRRIIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|227431309|ref|ZP_03913362.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352902|gb|EEJ43075.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 255 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY +I Y+G+ +FG+Q Q KNG ++QG + K I + + V GA RTD Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVIHFDLPFNIDPEGVRKGMNTLL--PFDVVVNHVEHVSDDFHARFNTHSKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-- 170 +YR+ T ++ LD ++ A L+G HDF +F + + ++ IR Sbjct: 119 IYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRLI 178 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T D + I +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 179 TRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 239 RYTAPASGLYLDEIDYN 255 >gi|116617361|ref|YP_817732.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272438|sp|Q03ZL3|TRUA_LEUMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116096208|gb|ABJ61359.1| Pseudouridylate synthase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 127/257 (49%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY +I Y+G+ +FG+Q Q KNG ++QG + K I + + V GA RTD Sbjct: 1 MPRYKAVIAYDGAEFFGFQLQTKNGVESVRTVQGELNKVINKMAKNPSPQIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL P + K +N L + + ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFNIDPEGVRKGMNTLL--PFDVVVNHVEHVSDDFHARFNTHSKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-- 170 +YR+ T ++ LD ++ A L+G HDF +F + + ++ IR Sbjct: 119 IYRVSTTDYKDPFKRKYTGHFHWKLDINRIKAALPDLLGEHDFASFAASGNETATTIRLI 178 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T D + I +FL+ QIR VG L +G GK D+ + ++ +DR++ Sbjct: 179 TRADVDEKPEEHEIVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D ++Y+ Sbjct: 239 RYTAPASGLYLDEIDYN 255 >gi|270294324|ref|ZP_06200526.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] gi|270275791|gb|EFA21651.1| tRNA pseudouridine synthase A [Bacteroides sp. D20] Length = 250 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V + LN L IS+ L V HARF A R Y Y + T + Sbjct: 61 VAHFDSDSPLDTVFMTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 + + + ++ D E M AAQ L DFT+F +H + I H Sbjct: 119 S--PFNRQYRCRLFQTPDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCKIMHAAWTRV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVEGFRRVIEQKDRCQAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVAY 243 >gi|91776053|ref|YP_545809.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] gi|123254255|sp|Q1H0L9|TRUA_METFK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91710040|gb|ABE49968.1| tRNA pseudouridine synthase A [Methylobacillus flagellatus KT] Length = 261 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 143/245 (58%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+G+ GWQ Q N ++Q ++E A+ + G V V AGRTD+GVHAL QV Sbjct: 1 MRLALGIEYDGAGFCGWQSQPNRLAVQDALESALSQLAGHQVRVSAAGRTDTGVHALSQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N L + +L VD +FHARF A +RSY Y +I + Sbjct: 61 VHFDTEAVRSQTAWVRGVNTKL--PRGVRVLWAKEVDPRFHARFDAYQRSYQYWLINQPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+A + LD + M+ A +L+G+HDF+ FR+ CQA SP++T+ H V++FG Sbjct: 119 APAVMAGKAGWFHQPLDLQAMQEAMAYLLGQHDFSAFRAAECQAKSPVKTMHHASVSAFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A +FLH Q+R+ VG+L +G GK+ + + L+ +DR+ P P+GLY Sbjct: 179 SSMIFDFCASAFLHHQVRNMVGALVYIGKGKYPPVFIAELLEKRDRRCSPPTFSPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|260431135|ref|ZP_05785106.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] gi|260414963|gb|EEX08222.1| tRNA pseudouridine synthase A [Silicibacter lacuscaerulensis ITI-1157] Length = 255 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 122/250 (48%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY G + GWQRQK S+QG+IE A+ + + AGRTD+GVHAL Q Sbjct: 1 MPRYALKVEYQGEPFAGWQRQKELPSVQGAIEAALSKLQPGSHTIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++IL + V +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLEKDWDPFRLSEALNYHLK-PLPVAILKAAQVADDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP +KG+ W I LD M+ A L+GRHDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDKGQVWQIGHPLDVAAMQEGADMLIGRHDFTTFRSSICQAASPVKTLDELRVEQV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + V ARSFLH Q+RSFVG+L+ VG G WT D+ AL+A DR CGP+ PP Sbjct: 180 QGFSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLARVGY 249 >gi|88812707|ref|ZP_01127954.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] gi|88790123|gb|EAR21243.1| Pseudouridylate synthase [Nitrococcus mobilis Nb-231] Length = 284 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS + GWQRQ + S+Q ++E+A+ V V V AGRTD+GVHA QV Sbjct: 26 MRVALGIEYDGSRFSGWQRQSHRLSVQVALEEALSRVADHPVTVTCAGRTDAGVHATHQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N+ L I I + V + FHARF+A RSY Y I++R Sbjct: 86 IHFDTTAPRPSRAWVRGVNSNL--PGDIRITWVRAVPQVFHARFAATARSYRYVILSRAV 143 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AL + R + L MR+AAQ+L+G HDF+++R++ CQA P+RT+ D+ G Sbjct: 144 PPALHRRRVAWTYRPLQLSAMRVAAQYLLGEHDFSSYRALACQARHPVRTVHRLDITRCG 203 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V A +FLH +R+ G L +G G + LQA+DR G AP GLY Sbjct: 204 DYFYVDVTANAFLHHMVRNIAGVLLSIGSGARPPQWSWEILQARDRTAGGVTAPAGGLYL 263 Query: 242 DSVEY 246 +V Y Sbjct: 264 VAVRY 268 >gi|239908843|ref|YP_002955585.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] gi|259550383|sp|C4XPZ9|TRUA_DESMR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239798710|dbj|BAH77699.1| tRNA pseudouridine synthase A [Desulfovibrio magneticus RS-1] Length = 274 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + G+ V VHGAGRTDSGVHAL Sbjct: 1 MARLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KAL A L +++ +V FH+RF A + Y Y + T Sbjct: 61 AQVAHADVPEHRAGLPWGKALTALL--PKDVAVTEARLVAPDFHSRFDATGKEYRYTLWT 118 Query: 119 RQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R +LD M A VG HDF F++ S +R + Sbjct: 119 RPGHVLPWRRPYVWDVGRYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRVWDV 178 Query: 176 DV--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + R FL +R+ +G+L VG GK T+ D+ L A DR+ Sbjct: 179 SRLAGTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAPGT 238 Query: 234 APPEGLYFDSVEY 246 AP +GL +VEY Sbjct: 239 APAQGLCLHAVEY 251 >gi|149006661|ref|ZP_01830347.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] gi|147761576|gb|EDK68540.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP18-BS74] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFDGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|158320711|ref|YP_001513218.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] gi|158140910|gb|ABW19222.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs] Length = 245 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++IEY+GS Y GWQR K+ +IQG IEK + +TG V + G+GRTD+GVHA Sbjct: 1 MRNIKLVIEYDGSRYDGWQRLKDSEQTIQGKIEKVLNEMTGSSVEIIGSGRTDAGVHAKN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + +N YL I + + V +FH+R++A ++ Y Y + Sbjct: 61 QIANFKTKSSMSIRDIHNYMNHYL--PQDIVVKEVKEVSDRFHSRYNAQKKKYTYYVWNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A ++ ++ P++LD + M AA L+G HDF F S+ S +RTI+ + Sbjct: 119 RIPSAFQRKYSYYFPETLDLQRMEAAANQLLGTHDFIGFSSVKKAKKSTVRTIEEITIVQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++E + FLH IR +G+L +G + + +++ ++ R G AP +GL Sbjct: 179 NNHMLEFSFIGDGFLHNMIRILMGTLLEIGTREKDISCIDEIFTSKTRAMAGKTAPAQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVYY 245 >gi|90408620|ref|ZP_01216774.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] gi|90310264|gb|EAS38395.1| tRNA pseudouridine synthase A [Psychromonas sp. CNPT3] Length = 261 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+G+ Y+GWQRQK+ S+Q +EKA+ +V V V+ AGRTD+GVH QV Sbjct: 1 MRIALGIEYDGTAYYGWQRQKDVISVQEELEKALSIVANHSVRVNCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +NA L I++ VD FHARFSA R Y Y I Sbjct: 61 IHFDTQAVRNDVAWTLGINANL--PKDIAVRWCKHVDDSFHARFSATARRYRYIIYNHVL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q +VG HDFT+FR++HCQA++P+R+I +V Sbjct: 119 RPGILNSGLSHYHHLLDADKMHQAGQFIVGTHDFTSFRALHCQANTPVRSIHSLNVTRRA 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +FLH +R+ GSL +G L L+ ++R A P GLY Sbjct: 179 DFIIIDIKANAFLHHMVRNIAGSLIEIGQDNQKVDWLMTLLEYKNRARAAATAKPGGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VEVDY 243 >gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645] Length = 260 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 6/247 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +I+ Y+G+ Y GWQ Q + +IQG++E+ + +TGE + V G+GRTDSGVHA+ QV Sbjct: 9 LQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIGQVVS 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + + P ++ +ALNA L + +I +F+A AI++ Y Y + + Sbjct: 69 FRMQSQLSPDVMRRALNAELPPDIVVQSARNAIP--EFNAIDCAIKKRYRYLLQEGRIDD 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----FDVNS 179 + AW + K L+ M+ AAQHL+G HDF +F S+ + + +R + Sbjct: 127 VFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHVFDVQVLRSERH 186 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + I V A FL+ +R VG+L VG G+ + + L A+ R G AP GL Sbjct: 187 EFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAHGL 246 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 247 YLLRVDY 253 >gi|254248703|ref|ZP_04942023.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] gi|124875204|gb|EAY65194.1| Pseudouridylate synthase [Burkholderia cenocepacia PC184] Length = 271 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L Q Sbjct: 1 MMRIALGIQYDGAAFCGWQAQPHGKTVQNRLEHALAEFARVPLHTTVAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VVHFDTDLEREVFSWVRGTNAFL--PPTVSVQWAKPMPDTFHARFSAFERTYYYALYVHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV Sbjct: 119 VRSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 GYFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAHVGY 244 >gi|57239154|ref|YP_180290.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58579105|ref|YP_197317.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|62901163|sp|Q5HBA4|TRUA_EHRRW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57161233|emb|CAH58149.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] gi|58417731|emb|CAI26935.1| tRNA pseudouridine synthase A [Ehrlichia ruminantium str. Welgevonden] Length = 246 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 108/247 (43%), Positives = 158/247 (63%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY ++IEY+GS + GWQ+Q N +SIQ +EKAIF + + V+V+GAGRTD+GVHAL Q Sbjct: 1 MRYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ I+ A+N +L + + D FHARFSA RR YLY+I+ R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHLISHAIAVVH-VEKTDTDFHARFSAKRRYYLYKIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL +++ RAWL+ L+ ENM A ++ G H+F++FR+ CQ+ SPI+T+D+ + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I+I + A SFLH Q+R VG+L G G + ++ ++A +R G AP GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 241 FDSVEYS 247 F V+YS Sbjct: 240 FVKVDYS 246 >gi|49183176|ref|YP_026428.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49476722|ref|YP_034493.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145077|ref|YP_081752.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|165873347|ref|ZP_02217948.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167642077|ref|ZP_02400301.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196046214|ref|ZP_03113441.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|270000591|ref|YP_003329029.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612229|ref|YP_003541012.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901423|sp|Q63H59|TRUA1_BACCZ RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901430|sp|Q6HPM7|TRUA1_BACHK RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|62901432|sp|Q6I4Q2|TRUA1_BACAN RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|49177103|gb|AAT52479.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|49328278|gb|AAT58924.1| tRNA pseudouridine synthase A (pseudouridylate synthase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978546|gb|AAU20096.1| tRNA-pseudouridylate synthase I [Bacillus cereus E33L] gi|164710915|gb|EDR16491.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167509964|gb|EDR85386.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|196022959|gb|EDX61639.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|224552852|gb|ACN55064.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|269850235|gb|ACZ49980.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 247 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|114320390|ref|YP_742073.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] gi|114226784|gb|ABI56583.1| tRNA pseudouridine synthase A [Alkalilimnicola ehrlichii MLHE-1] Length = 261 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 101/244 (41%), Positives = 140/244 (57%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + +EY+GSG+ GWQRQ + S+Q ++E A+ V E V V AGRTD+GVHA QV Sbjct: 4 RFALGLEYDGSGFCGWQRQDHAPSVQAALEAALSRVADEPVTVTCAGRTDTGVHATGQVV 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ NA L DT+S+ + V + FHARF A+RRSY Y ++ Sbjct: 64 HFETGAYRPEHAWVLGANANL--PDTVSVHWVQPVSEAFHARFGALRRSYRYVWYCSRSR 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 AL +GR +LD E M +AA HL+GRHDF+ FR++ CQA P+R + DV + G Sbjct: 122 PALLRGRVAWSKYALDPEPMAMAAGHLLGRHDFSAFRAVACQAKHPVRELYRLDVWARGG 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + V A +FLH +R+ G+L L+G G+ +T L DR G AP EGLY Sbjct: 182 FVYLDVCANAFLHHMVRNLAGTLALIGRGERPATWAADLLAGGDRTRAGATAPAEGLYLV 241 Query: 243 SVEY 246 V+Y Sbjct: 242 GVDY 245 >gi|77164531|ref|YP_343056.1| pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|254433109|ref|ZP_05046617.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] gi|123594636|sp|Q3JCC0|TRUA_NITOC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76882845|gb|ABA57526.1| Pseudouridylate synthase [Nitrosococcus oceani ATCC 19707] gi|207089442|gb|EDZ66713.1| tRNA pseudouridine synthase A [Nitrosococcus oceani AFC27] Length = 259 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ QK ++Q ++E+A+ V E V V AGRTD+GVHA QV Sbjct: 1 MRIALGLEYDGSNFSGWQSQKGVRTVQATLEQALSAVANEPVTVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA L I V++ FHARFSAI R Y Y I+ R A Sbjct: 61 VHFDTATFRLEHNWVFGGNANLLPEVAILW--AQPVNEAFHARFSAIARHYRYIILNRGA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R + L M+ A LVG HDF++FR+ CQA SP+R + + +V G Sbjct: 119 RPAIANRRVTWYCQPLSVTKMKEAGAFLVGEHDFSSFRAKACQAKSPVRNVHYLEVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A +FLH +R+ G L +G G+ E+ LQA+ R G A P+GLY Sbjct: 179 DWIVIDISANAFLHHMVRNIAGVLMAIGKGEQPPRWAEEVLQARCRAVGGVTARPDGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VRVDY 243 >gi|299066408|emb|CBJ37593.1| tRNA pseudouridylate synthase I [Ralstonia solanacearum CMR15] Length = 274 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 136/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G ++ AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLEAALREFAGVVLPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VIHLDTDLVRDPFSWVRGTNAFL--PPTVAVRWAQAMPEDFHARFSAHRRTYYYALTYGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G+A + D M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEGKAGYVTLPPGQSLDVAAMHEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G GK + + + L A++RK P P Sbjct: 179 VRGQGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGKRPAAWMGEVLAARERKAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|148993376|ref|ZP_01822893.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|168488681|ref|ZP_02712880.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|147927931|gb|EDK78951.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP9-BS68] gi|183572616|gb|EDT93144.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP195] gi|332072441|gb|EGI82924.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17570] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|289208514|ref|YP_003460580.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] gi|288944145|gb|ADC71844.1| tRNA pseudouridine synthase A [Thioalkalivibrio sp. K90mix] Length = 269 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +EY+G G GWQRQK+G S+QG +E A+ V + V + AGRTD+GVHA QV Sbjct: 4 QRWALGVEYDGRGLLGWQRQKDGPSVQGHLEAALSFVANDGVELTCAGRTDAGVHATAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N+ L D I++ V+ FHARF A R Y Y I R Sbjct: 64 AHFDTSAVRERHSWVLGVNSRL--PDGIALRWAEPVNDDFHARFKACGRRYRYVIANRAV 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ALE GR + LD M AAQ VG HDF++ R+ CQA SPIR + V G Sbjct: 122 RPALEAGRVAWWRRPLDTARMHDAAQTFVGEHDFSSLRAAGCQAKSPIREVHSIAVQRRG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ G L +GDG+ + L A+DR+ G AP GLYF Sbjct: 182 SYVVLDIHANAFLHHMVRNIAGVLLAIGDGREEPGWAAQILAARDRRVSGITAPAGGLYF 241 Query: 242 DSVEY 246 V+Y Sbjct: 242 VHVDY 246 >gi|303238754|ref|ZP_07325286.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] gi|302593633|gb|EFL63349.1| tRNA pseudouridine synthase A [Acetivibrio cellulolyticus CD2] Length = 245 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++I+Y+GS Y GWQR + +IQG +E+ + ++ E + + G+GRTD+GVHA + Sbjct: 1 MRNIKLVIQYDGSKYRGWQRLGDSDKTIQGKLEQVLSQMSNEKIELIGSGRTDAGVHAFK 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + L YL + I +++ VD FH+R + YLYRI Sbjct: 61 QVANFHTKSDLAEDAMLDYLYKYL--PEDIVVIDAEEVDNMFHSRHHVKGKKYLYRIWNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I + LD MR AA+H G HDF++F S+ + S R I ++ Sbjct: 119 KRHNPFMRKHCTHIAEPLDIRLMRNAAEHFTGMHDFSSFTSLKTKNKSKEREIFSVEIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++I FL+ R G+L VG G+ + ++ K L +DRK GP AP GL Sbjct: 179 ENEIMDIVFYGNGFLYNMARIMAGTLIEVGAGRINADNIPKILAKKDRKLAGPTAPTNGL 238 Query: 240 YFDSVEY 246 VEY Sbjct: 239 ILYDVEY 245 >gi|300119545|ref|ZP_07057089.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|298723017|gb|EFI63915.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|229074203|ref|ZP_04207249.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] gi|228708973|gb|EEL61100.1| tRNA pseudouridine synthase A [Bacillus cereus Rock4-18] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIFEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|34498219|ref|NP_902434.1| tRNA pseudouridine synthase A [Chromobacterium violaceum ATCC 12472] gi|42559750|sp|Q7NUD6|TRUA_CHRVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34104072|gb|AAQ60432.1| pseudouridylate synthase A [Chromobacterium violaceum ATCC 12472] Length = 262 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + IEY+G + GWQ Q +G+++Q + +A+ + G VV H AGRTD+GVHA Q Sbjct: 1 MRIALGIEYDGRAFAGWQSQPHGNTVQDRLNRALGQIAGNRDVVTHAAGRTDAGVHAAMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA L ++++ V FHARFSA RSY Y ++T Sbjct: 61 VVHFDTDASRPLNAWVRGVNALL--PPEVAVVWAREVGDDFHARFSAFSRSYSYFLLTHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L G+ ++LD MR AA L+GRHDF++FR+ CQA SP++ + D+ Sbjct: 119 VRSCLLAGKVGWYHQALDVAAMREAAAGLLGRHDFSSFRASECQAKSPVKDLQRLDIIEA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + A +FLH +R+ VG+L VG G + D++ L A+DR P P+GLY Sbjct: 179 DGLLRFDLHADAFLHHMVRNIVGALLYVGKGALSPADMQSLLAARDRTSAPPTFMPDGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LTGVGY 244 >gi|47570254|ref|ZP_00240905.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47553078|gb|EAL11478.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 247 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 119 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 179 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 238 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 239 YLWQVNYN 246 >gi|332524310|ref|ZP_08400532.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] gi|332107641|gb|EGJ08865.1| tRNA pseudouridine synthase A [Rubrivivax benzoatilyticus JA2] Length = 274 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 127/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y G+ Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHA QV Sbjct: 16 RIALGIAYRGARYHGWQSQPDGRTVQDVLERALGQFAATPVGTLCAGRTDAGVHAFNQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD E + N YL D +++ VD +FHAR SA R Y + I+ Sbjct: 76 HFDAPVERDEFSWVRGTNRYL--PDDVAVQWCRRVDARFHARNSAQGRRYRFVILEAPVR 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+E G + + LD + MR AA HL+G HDF++FR+ CQA +P++T+ V G Sbjct: 134 PAIEAGACGWVFRPLDGDAMRAAAAHLIGEHDFSSFRAAGCQALTPVKTMRSIGVERRGA 193 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I A +FLH +R+ VG L VG G+ + + L A+ R P PP+GLYF Sbjct: 194 YWRIEFDASAFLHHMVRNIVGCLVTVGSGRQRPEWMAEVLAARSRDAAAPTFPPDGLYFV 253 Query: 243 SVEY 246 Y Sbjct: 254 GPYY 257 >gi|255264700|ref|ZP_05344042.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] gi|255107035|gb|EET49709.1| tRNA pseudouridine synthase A [Thalassiobium sp. R2A62] Length = 257 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 116/250 (46%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYDGAPFAGWQRQKDQPSVQGAIEAALAKLEPRAHTIAAAGRTDAGVHGLAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R W L +ALN +LK ++I++ +IV+ +HARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLERGWQAFRLSEALNYHLK-PAPVAIVDCAIVEGDWHARFSAVERRYLFRLVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + +GR W + LD M+ AA HLVG HDFTTFRS CQ++SP++T+D D++ Sbjct: 120 ASMTHLRGRVWHVQNPLDVAAMQAAAAHLVGLHDFTTFRSSICQSASPVKTLDRLDISEH 179 Query: 181 GN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ARSFLH Q+RSFVG+L+ VG G W + AL+A +R CGP++PP Sbjct: 180 ETNAGVEYRFDVRARSFLHNQVRSFVGTLERVGAGSWDPDRVRVALEACERSTCGPVSPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLAGVGY 249 >gi|307706977|ref|ZP_07643775.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] gi|307617638|gb|EFN96807.1| tRNA pseudouridine synthase A [Streptococcus mitis SK321] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVVSIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + +E L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIELILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|146302394|ref|YP_001196985.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] gi|146156812|gb|ABQ07666.1| tRNA pseudouridine synthase A [Flavobacterium johnsoniae UW101] Length = 284 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N SS+Q ++ KA+ ++ + V GAGRTD+GVHA Sbjct: 41 MRYFIHFAYNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTGVHAEEMY 100 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + +L LN+YL I++ NL V H RF A +R+Y Y I T Sbjct: 101 GHFDLEKSIDIPVLVHKLNSYL--PKDIAVYNLIPVHDDAHCRFDATKRTYEYHINT--V 156 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W + + LD E M AA+ L+ DF F ++ ++ TI Sbjct: 157 KNPFLEELSWYVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAYWKQEN 216 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L +G K T D E + +++R++ G P GLY Sbjct: 217 NKLVFTISANRFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPAHGLYL 276 Query: 242 DSVEY 246 + Y Sbjct: 277 TKIYY 281 >gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM 14884] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 129/248 (52%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+G+ + G+QRQ K ++Q +E A+ + G + V AGRTD+GVHAL Sbjct: 1 MRRIKLTLEYDGTRFAGFQRQAKGERTVQAELESALAQIPGAVPKVVAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H+D P + ALN L + L FHAR+S R Y YRI+ R Sbjct: 61 MVVHYDTEDRIPPEKIPYALNRLL--PPDVRALAAEAAPPGFHARYSCHWRRYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q P AL + R W +PK LD M+ H +G HDF F + + + RT+ + Sbjct: 119 QMPSALARERTWWVPKPLDANAMQQGLAHFLGEHDFKAFATQERRGTV--RTLYRARLER 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I +V FL Q+R+ VG+L VG GK + L +RK+ GP APP+GL Sbjct: 177 CGEEIVIDLVGNGFLRGQVRAMVGTLVEVGLGKRDPDVIAWLLAHGERKDAGPSAPPQGL 236 Query: 240 YFDSVEYS 247 YF + Y+ Sbjct: 237 YFVAAGYA 244 >gi|149021302|ref|ZP_01835548.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|168491513|ref|ZP_02715656.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225861429|ref|YP_002742938.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298229625|ref|ZP_06963306.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254115|ref|ZP_06977701.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503335|ref|YP_003725275.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|254764872|sp|C1CSL6|TRUA_STRZT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147930403|gb|EDK81387.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP23-BS72] gi|183574268|gb|EDT94796.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC0288-04] gi|225728219|gb|ACO24070.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Taiwan19F-14] gi|298238930|gb|ADI70061.1| tRNA-pseudouridine synthase I [Streptococcus pneumoniae TCH8431/19A] gi|327389783|gb|EGE88128.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA04375] gi|332073932|gb|EGI84410.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41301] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVAADFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|228983397|ref|ZP_04143610.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776387|gb|EEM24740.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|120554480|ref|YP_958831.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] gi|120324329|gb|ABM18644.1| tRNA pseudouridine synthase A [Marinobacter aquaeolei VT8] Length = 302 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +I EY+G + GWQ QK S++ + +A V V + AGRTD+GVHA QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N L D IS+ FHARFSAI R Y Y I Sbjct: 78 AHFDTPSVRNLRSWVMGMNTAL--PDDISVHWAGNGQGDFHARFSAIYRRYRYVIYNHPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + LD E M A+Q LVG HDF++FR+ CQ+ +P+R ++ V G Sbjct: 136 RPGIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQISVTRCG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I V A +FLH +R+ G+L VG+G+ + L+ +DRK G APP GLY Sbjct: 196 EFVVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYL 255 Query: 242 DSVEY 246 V Y Sbjct: 256 VDVGY 260 >gi|152984048|ref|YP_001347395.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] gi|150959206|gb|ABR81231.1| tRNA pseudouridine synthase A [Pseudomonas aeruginosa PA7] Length = 285 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ+ S+Q ++E+A+ V E V V AGRTD+ VHA QV Sbjct: 19 RIALGVEYKGSRYRGWQRQEAGVPSVQEALERALSKVAAESVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PGDISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHMAEEVTWNHRPLDIERMREAAQVLVGTHDFTSFRAVQCQARSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEY 246 VEY Sbjct: 257 VRVEY 261 >gi|23097605|ref|NP_691071.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] gi|38258776|sp|Q8CXP1|TRUA_OCEIH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22775828|dbj|BAC12106.1| tRNA pseudouridine synthase A [Oceanobacillus iheyensis HTE831] Length = 253 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q + ++QG +EKA++ + G+ + + +GRTD+GVHA+ Sbjct: 1 MERLKCTVSYDGSDFAGFQVQPDHRTVQGVLEKALYNMHKGKSIRIQASGRTDTGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E +ALN L D + I + ++FHAR+S + Y Y ++ Sbjct: 61 QVIHFDSPLEIPERNWKQALNTLL--PDDVRIQKVEKKTEEFHARYSVKEKEYHYFVLNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + P ++G + P+ LD E M+ A Q+L G HDFT+F S S +RT+ H + Sbjct: 119 EDPNVFQRGYVYHEPRKLDLERMQEACQYLEGTHDFTSFSSAKSSVKGSKVRTLYHVSCH 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G IE FL+ +R + L VG GK D+ L +++R++ G P+G Sbjct: 179 QTGTNIEFIFRGSGFLYNMVRIMMSVLIDVGKGKRNPEDIIDLLASKNRQQIGKTMAPQG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLWRVSY 246 >gi|238927931|ref|ZP_04659691.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] gi|238884264|gb|EEQ47902.1| tRNA-pseudouridine synthase I [Selenomonas flueggei ATCC 43531] Length = 256 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 79/252 (31%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ + I Y+G+ Y G+QRQ ++Q +E A+ + GE+V + AGRTD+G Sbjct: 1 MMKQRARNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I + ++F AR SA ++Y+Y Sbjct: 61 VHAYGQVVNFFTDGRIPTEHLPRAVNGLL--PPDIVVSQAWEAPREFSARHSATGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 RI + P + AW + + LD E M L G HD+++FR+ SP+RT+D Sbjct: 119 RIEECRVPNPFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDE 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I V FL+ +R+ V + VG G+ + + + A+DR+ P A Sbjct: 179 IRLTEEEGRLSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTA 238 Query: 235 PPEGLYFDSVEY 246 P GLY +V+Y Sbjct: 239 PACGLYLLAVDY 250 >gi|229015543|ref|ZP_04172540.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] gi|229021754|ref|ZP_04178334.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228739541|gb|EEL89957.1| tRNA pseudouridine synthase A [Bacillus cereus AH1272] gi|228745766|gb|EEL95771.1| tRNA pseudouridine synthase A [Bacillus cereus AH1273] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLAEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|65317587|ref|ZP_00390546.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 257 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 11 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 70 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 71 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 128 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 129 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 189 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 248 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 249 YLWQVNYN 256 >gi|319779623|ref|YP_004130536.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] gi|317109647|gb|ADU92393.1| tRNA pseudouridine synthase A [Taylorella equigenitalis MCE9] Length = 268 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + I Y+G + GWQ Q NG ++Q +E A+ T V AGRTD+GVHAL QV Sbjct: 4 RVALGISYDGRDFQGWQTQPNGLTVQDKLEAALREFTRHQVSTICAGRTDTGVHALGQVV 63 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD + + +N++L D+I + IV F ARFSA+ R+Y+Y + + Sbjct: 64 HFDTEVDRNLESWIRGVNSHL--PDSIRVRWSKIVPDSFSARFSAVSRTYVYLLRNERVM 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + GRA +LD E+M IA + ++G HDFT+FRS CQASSP+RT+D F +N+ G Sbjct: 122 SPIWSGRAGWDFHNLDVESMNIAKEKMIGTHDFTSFRSSQCQASSPVRTLDLFKINAEGP 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + A FLH +R+ +G++ VG G+++ + + ++A++R P P+GLYF Sbjct: 182 FIIFTLRANGFLHHMVRNLIGTILYVGMGRFSPSKIPDLIEAKNRMFTAPTFMPDGLYFA 241 Query: 243 SVEY 246 V+Y Sbjct: 242 RVDY 245 >gi|228931644|ref|ZP_04094550.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828072|gb|EEM73800.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L + I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PNDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|53803316|ref|YP_114909.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] gi|62901252|sp|Q604P1|TRUA_METCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|53757077|gb|AAU91368.1| tRNA pseudouridine synthase A [Methylococcus capsulatus str. Bath] Length = 271 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GSG+ GWQ Q +IQ +E+A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGIEYDGSGFAGWQWQNGKRTIQAEVERALSRVADAPVRVTCAGRTDAGVHAIEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD N L + + IL + + FHAR SAI R Y Y I+ R Sbjct: 61 AHFDTESRRSERSWLLGANTAL--PEDVRILWVRETEPHFHARLSAIARYYRYEILNRPM 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + LD E MR A +LVG HDF++FR+ CQ+ SP R + V G Sbjct: 119 RSALRPRQFTWCHAPLDVERMREGAAYLVGEHDFSSFRAQQCQSRSPFRRVHFLHVRREG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ G L VG GK + + L +DR + G APP+GLY Sbjct: 179 ERVIMEIAANAFVHHMVRNIAGVLMAVGAGKRDPAWVGELLAMRDRAKGGVTAPPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 GGVCY 243 >gi|229170993|ref|ZP_04298594.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] gi|228612533|gb|EEK69754.1| tRNA pseudouridine synthase A [Bacillus cereus MM3] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIKQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEISSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|71083164|ref|YP_265883.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] gi|123734383|sp|Q4FNF9|TRUA_PELUB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71062277|gb|AAZ21280.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1062] Length = 246 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 141/246 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +E + + IS+L + +FHAR SA +R Y Y I R Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFINDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNRL 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +LEK R W I K LD E M+ ++ L+G DF+TFR+ C A SPI+T+ ++ S Sbjct: 121 SKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIKSK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EGL+ Sbjct: 181 DGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLF 240 Query: 241 FDSVEY 246 + V Y Sbjct: 241 LEKVIY 246 >gi|170689686|ref|ZP_02880864.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|177656196|ref|ZP_02937177.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190567334|ref|ZP_03020248.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|196036037|ref|ZP_03103438.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218901347|ref|YP_002449181.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225862194|ref|YP_002747572.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227812815|ref|YP_002812824.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228912881|ref|ZP_04076528.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925395|ref|ZP_04088491.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228943947|ref|ZP_04106332.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089273|ref|ZP_04220554.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|229119804|ref|ZP_04249065.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|229182536|ref|ZP_04309787.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|229604554|ref|YP_002864793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686641|ref|ZP_05150500.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254726279|ref|ZP_05188061.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254735284|ref|ZP_05192992.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254739476|ref|ZP_05197174.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254755530|ref|ZP_05207564.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|301051879|ref|YP_003790090.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|170666357|gb|EDT17142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172079844|gb|EDT64958.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|190561461|gb|EDV15432.1| tRNA pseudouridine synthase A [Bacillus anthracis Tsiankovskii-I] gi|195991406|gb|EDX55373.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|218535501|gb|ACK87899.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|225789774|gb|ACO29991.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|227005095|gb|ACP14838.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|228600991|gb|EEK58560.1| tRNA pseudouridine synthase A [Bacillus cereus BGSC 6E1] gi|228663705|gb|EEL19284.1| tRNA pseudouridine synthase A [Bacillus cereus 95/8201] gi|228694112|gb|EEL47794.1| tRNA pseudouridine synthase A [Bacillus cereus Rock3-42] gi|228815780|gb|EEM62016.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834317|gb|EEM79858.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846817|gb|EEM91822.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268962|gb|ACQ50599.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|300374048|gb|ADK02952.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|229159315|ref|ZP_04287339.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] gi|228624207|gb|EEK81009.1| tRNA pseudouridine synthase A [Bacillus cereus R309803] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QGDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella moribillum M424] gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella moribillum M424] Length = 265 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GSGY G+Q Q N +++Q IEKA+ + + + V+ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSGYHGFQIQPNNNTVQEEIEKALKKINKKDIRVYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA L I I ++ ++ FH R+++ R++Y Y++ Q Sbjct: 61 LHFDTELNIPNEAWKKALNANL--PADIRIFGVTTSNEDFHVRYNSTRKTYHYKLYIGQN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + E + A + +G HDF++F S + IR I +F++ Sbjct: 119 VDPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCSKNSSVEDKIREIYYFNMYYDK 178 Query: 182 NLIE---IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 V FL+ +R +G+++ V GK+ + +++ L ++RK GP A G Sbjct: 179 TNPRVINFDVCGNGFLYNMVRIIIGTIQDVAAGKYGAEYVKEILDKKERKYAGPKADAAG 238 Query: 239 LYFDSVEYS 247 LY V Y+ Sbjct: 239 LYLKEVIYN 247 >gi|328944888|gb|EGG39047.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1087] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|268318882|ref|YP_003292538.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] gi|262397257|emb|CAX66271.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii FI9785] Length = 263 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+A+DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKAKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLQHVFY 249 >gi|218129428|ref|ZP_03458232.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|317477530|ref|ZP_07936755.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] gi|217988158|gb|EEC54481.1| hypothetical protein BACEGG_01005 [Bacteroides eggerthii DSM 20697] gi|316906331|gb|EFV28060.1| tRNA pseudouridine synthase A [Bacteroides eggerthii 1_2_48FAA] Length = 251 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 114/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T Sbjct: 61 VAHFDSDAPLDVDFMADKLNRLL--PPDISVYRLRAVRPDAHARFDATARMYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 A + ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 117 AKMPFDRQYRCRLFQTPDFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRIIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVTY 243 >gi|157150719|ref|YP_001449723.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] gi|189030148|sp|A8AVB3|TRUA_STRGC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157075513|gb|ABV10196.1| tRNA pseudouridine synthase A [Streptococcus gordonii str. Challis substr. CH1] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDGEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|126736576|ref|ZP_01752316.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] gi|126713889|gb|EBA10760.1| tRNA pseudouridine synthase A [Roseobacter sp. CCS2] Length = 255 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 115/250 (46%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ + S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQNDQPSVQGAIEAALAKLEPRDHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK ++I+N + V +HARF A+ R YL+R+++R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHLK-PAPVAIVNCAQVADDWHARFDAVERQYLFRLMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 APL + G+ W + LD + M+ A L+G+HDFTTFRS CQA SP++T+D Sbjct: 120 APLTSDAGQMWRVKHPLDADAMQAGADQLLGQHDFTTFRSSICQAKSPVKTLDALRVEAL 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G V ARSFLH Q+RSFVG+L+ VG WT D+ KAL A+DR CGP+ PP Sbjct: 180 PHANGTEYRFHVRARSFLHNQVRSFVGTLERVGAEAWTPDDVGKALAAKDRSACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY +V+Y Sbjct: 240 QGLYLAAVKY 249 >gi|304320576|ref|YP_003854219.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] gi|303299478|gb|ADM09077.1| tRNA pseudouridine synthase A [Parvularcula bermudensis HTCC2503] Length = 253 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 113/245 (46%), Positives = 152/245 (62%), Gaps = 1/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +E++G+ + GWQRQ NG S+QG+IE+A +T +GAGRTDSGVHA+ Sbjct: 5 HRYRIEVEFDGTPFVGWQRQDNGPSVQGAIEEAAARLTQAPGACYGAGRTDSGVHAIAMT 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL + P + LNAYL+ +SIL V FHARF RR YLYR++ R++ Sbjct: 65 AHLDLAKALPPDNVRDGLNAYLR-PAPVSILLAQPVSPDFHARFQCHRRHYLYRLLDRRS 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L + R W + LD + M AA L+G+HDFTT+RS HCQA SP++T+ F+V G Sbjct: 124 PPVLMRDRVWHVIAPLDVDAMAKAAHPLIGQHDFTTYRSAHCQAESPLKTLSQFEVTRVG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A SFLH Q+RS VG+L VG G+ + ALQA DR+ CGP+AP GLYF Sbjct: 184 QEVHCALSAPSFLHNQVRSLVGTLVQVGLGRAALSQPYDALQACDRRACGPVAPAHGLYF 243 Query: 242 DSVEY 246 +Y Sbjct: 244 VKADY 248 >gi|313888069|ref|ZP_07821747.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846024|gb|EFR33407.1| tRNA pseudouridine synthase A [Peptoniphilus harei ACS-146-V-Sch2b] Length = 244 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+Q Q N +++G + I V + AGRTD GVHA Q Sbjct: 1 MKNILIKINYDGTNFHGFQLQPNERTVEGELNLGIEKTVKHPVKIFYAGRTDRGVHAEGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F L K LN L + +S+++ V FHARF A + Y Y + + Sbjct: 61 YANFYSDTTIDIGNLPKVLNFNL--PEDVSVVDAKYVPDAFHARFDAKLKKYRYVVHRSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + RA+ P +D + MR A L+G HDF +F IR+I+ DV Sbjct: 119 YRHALLRNRAYEYPYDVDPDRMREALASLIGEHDFNSFMGRGAIVKDSIRSIERIDVIED 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + VA+SFL IR G++ +G G+ +++AL+ + RK GP AP GLY Sbjct: 179 GDFLYFDFVAKSFLKNMIRIVTGTVLEIGRGQREIEYMKEALEKKSRKAAGPTAPACGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LLDVKY 244 >gi|91762406|ref|ZP_01264371.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] gi|91718208|gb|EAS84858.1| tRNA pseudouridine synthase A [Candidatus Pelagibacter ubique HTCC1002] Length = 246 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 139/246 (56%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY G+ + GWQ Q G SIQ I+ + E VV+ G+GRTD+GVHA+ Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +E + + IS+L + +FHAR SA +R Y Y I R Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFINDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNRL 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +LEK R W I K LD E M+ A+ L+G DF+TFR+ C A S I+T+ + S Sbjct: 121 SKPSLEKERGWHIIKKLDIELMKKGAKKLLGTKDFSTFRASSCNAKSSIKTMKSVKIKSK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 IEI+ ++SFL Q+RS VGSLK + + KW E ++++ R C P AP EGL+ Sbjct: 181 DGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLF 240 Query: 241 FDSVEY 246 + V Y Sbjct: 241 LEKVIY 246 >gi|15901439|ref|NP_346043.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|111656856|ref|ZP_01407696.1| hypothetical protein SpneT_02001886 [Streptococcus pneumoniae TIGR4] gi|149013277|ref|ZP_01834035.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|168486863|ref|ZP_02711371.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225859353|ref|YP_002740863.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|303253960|ref|ZP_07340080.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|303258528|ref|ZP_07344508.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|303262617|ref|ZP_07348557.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|303263556|ref|ZP_07349478.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] gi|303267576|ref|ZP_07353421.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|303269928|ref|ZP_07355667.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|25453312|sp|Q97PL0|TRUA_STRPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764867|sp|C1C8I7|TRUA_STRP7 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14973090|gb|AAK75683.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae TIGR4] gi|147762942|gb|EDK69888.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75] gi|183570198|gb|EDT90726.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1087-00] gi|225721425|gb|ACO17279.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 70585] gi|301794601|emb|CBW37047.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV104] gi|301802309|emb|CBW35063.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae INV200] gi|302599048|gb|EFL66074.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS455] gi|302636173|gb|EFL66668.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS292] gi|302640029|gb|EFL70484.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP-BS293] gi|302640531|gb|EFL70939.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS458] gi|302642899|gb|EFL73201.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS457] gi|302646594|gb|EFL76819.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae BS397] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|262282044|ref|ZP_06059813.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] gi|262262498|gb|EEY81195.1| tRNA pseudouridine synthase A [Streptococcus sp. 2_1_36FAA] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FHAR++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVERVSDDFHARYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRYYATHYPYPLELSLLEEAITQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|196041154|ref|ZP_03108450.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196028089|gb|EDX66700.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 252 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P SL+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 124 KTADVFRRNYVYQYPYSLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|195978825|ref|YP_002124069.1| tRNA pseudouridine synthase A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689837|sp|B4U545|TRUA_STREM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195975530|gb|ACG63056.1| tRNA pseudouridine synthase A TruA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+QRQ ++Q IEK + +TG + + +HGAG TD+GVHA Sbjct: 1 MTRYKAIISYDGTLFSGFQRQSQARTVQEEIEKTLQKLTGGQGIQIHGAGITDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ P L AL+ + D I +++L I FHAR+ ++Y + + Sbjct: 61 QVIHFDLEQKRDPEKLRFALDT--QTPDDIDVISLEIAADDFHARYHKHFKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDIAKMQAAIKDLVGTHDFTGFTAAGTSVKNKVRTITAATLTQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + L++++R+ GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRLPIEQIRLVLESKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|325697516|gb|EGD39402.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK160] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYNFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSNDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A HL G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAHLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|256618219|ref|ZP_05475065.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|256597746|gb|EEU16922.1| tRNA pseudouridine synthase [Enterococcus faecalis ATCC 4200] gi|315033638|gb|EFT45570.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0017] Length = 246 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|148986314|ref|ZP_01819186.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|147921782|gb|EDK72913.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP3-BS71] gi|301800423|emb|CBW33056.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae OXC141] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+++ VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQVITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFTVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|126462985|ref|YP_001044099.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] gi|166228755|sp|A3PLW1|TRUA_RHOS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126104649|gb|ABN77327.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides ATCC 17029] Length = 255 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 123/250 (49%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLEPGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVREW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLVREWDPFRLAGALNAHLK-PLPVAIVAAARVPEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SP++T+D Sbjct: 120 APEVHDRGRVWRVPHPLDPEAMRAGAAHLVGRHDFTTFRAAGCQAASPVKTLDALTLETV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G WT + +AL+A DR CGP+ PP Sbjct: 180 EGMNGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALEAHDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLTGVGY 249 >gi|332201036|gb|EGJ15107.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47901] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|154249373|ref|YP_001410198.1| tRNA pseudouridine synthase ACD [Fervidobacterium nodosum Rt17-B1] gi|171769414|sp|A7HKV8|TRUA_FERNB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|154153309|gb|ABS60541.1| tRNA pseudouridine synthase A [Fervidobacterium nodosum Rt17-B1] Length = 246 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + Y+G+ +FG+Q Q N ++QG +EKA+ V + + AGRTD+GVHA Q Sbjct: 1 MRRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + + K A+NA L I I + F+ R+ A RR Y Y I T Sbjct: 61 VVSFDCPNDRLMENDIKNAINANL--PGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ + W P LD E MRIAA++L+G HDF +F + + IRTI++ + Sbjct: 119 KSKNLFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIE 178 Query: 180 FGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N LI IRV SFL +RS V +L VG G W +++ L+++DR + LAP G Sbjct: 179 IKNGLILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHG 238 Query: 239 LYFDSV 244 L+ V Sbjct: 239 LFLYKV 244 >gi|90962375|ref|YP_536291.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|301300240|ref|ZP_07206452.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] gi|123391325|sp|Q1WSC1|TRUA_LACS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90821569|gb|ABE00208.1| tRNA pseudouridine synthase A [Lactobacillus salivarius UCC118] gi|300215017|gb|ADJ79433.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus salivarius CECT 5713] gi|300852181|gb|EFK79853.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 256 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + LN+ L +++ IV FH+R++ + YLYR+ Sbjct: 63 QVVHFDFPHPISAKGMLRGLNSML--PLDCEVVDCKIVPNDFHSRYTTHGKRYLYRVSRG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ LD E ++ A + G HD+++F + QA S +RTI V Sbjct: 121 EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYE 180 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I FL+ Q+R V +L +G+GK D + + +DR + AP Sbjct: 181 DKVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRSQARQTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLKEVYY 249 >gi|322377359|ref|ZP_08051850.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] gi|321281559|gb|EFX58568.1| tRNA pseudouridine synthase A [Streptococcus sp. M334] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMSRYYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLKV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|251781741|ref|YP_002996043.1| tRNA pseudouridine synthase A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390370|dbj|BAH80829.1| phosphomethylpyrimidine kinase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 249 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+QRQ + ++Q IEK + + + V +HGAGRTD+GVHA Sbjct: 1 MTRYRATISYDGTLFSGFQRQSHARTVQEEIEKTLQKLASVQPVPIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + I +++L+IV FH R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDLEKLRFALDT--QTPADIDVVDLAIVADDFHCRYQKHSKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD M+ A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHYPYPLDINKMQEAIKDLVGTHDFTGFTAAGTSVENKVRTITEATLVQ 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DDKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVEQIKVILDSKNRQLAGPTPAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|15602502|ref|NP_245574.1| tRNA pseudouridine synthase A [Pasteurella multocida subsp. multocida str. Pm70] gi|13431946|sp|P57861|TRUA_PASMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12720912|gb|AAK02721.1| TruA [Pasteurella multocida subsp. multocida str. Pm70] Length = 264 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG Y GWQRQ+N +S+Q +EKAI V + + AGRTDSGVHA QV Sbjct: 1 MKIALGIQYNGKNYCGWQRQENVASVQEQLEKAISFVANQPCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ V FHARFSA R Y Y + + Sbjct: 61 VHFETDAIRAEKAWSFGVNANL--PDDISVSWAKCVTDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M A Q L+G DF++FR+ CQ+ +P R + H V G Sbjct: 119 RSAILPEGVTHCHLDLDHHLMHQAGQALLGEQDFSSFRAAQCQSHTPFRNVHHLKVVRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G + L +DR+ P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGAGHQPVEWIGWLLAQKDRRLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVSY 243 >gi|293395134|ref|ZP_06639420.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] gi|291422311|gb|EFE95554.1| tRNA pseudouridine synthase A [Serratia odorifera DSM 4582] Length = 270 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 134/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+QG +E+A+ V VVV AGRTD+GVHA QV Sbjct: 10 KIALGIEYDGSRYYGWQRQQEVASVQGCLEQALSKVADAPVVVFCAGRTDAGVHATGQVV 69 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ +S V + FHARFSA R Y Y I + Sbjct: 70 HFETTARRKDAAWTMGVNTHL--PPDIAVRWVSEVREDFHARFSATARRYRYLIFNHRYR 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD + M+ AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 128 PAVLQQGMTHFYHPLDADRMQRAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGQ 187 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + L +DR A +GLY Sbjct: 188 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATAKADGLYLV 247 Query: 243 SVEY 246 +V+Y Sbjct: 248 AVDY 251 >gi|320540467|ref|ZP_08040117.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] gi|320029398|gb|EFW11427.1| pseudouridylate synthase I [Serratia symbiotica str. Tucson] Length = 273 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQ+Q+ +S+QG +E+A+ V + V AGRTDSGVHA QV Sbjct: 12 QKIALGIEYDGSRYYGWQQQREVASVQGCLEQALSKVADAPINVLCAGRTDSGVHATGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +N +L I++ +S V FHARFSAI R Y Y I + Sbjct: 72 VHFETSARRKDAAWSMGVNTHL--PPDIAVRWVSAVADDFHARFSAIARRYRYIIYNHRN 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + LD M AAQ L+G +DFT+FR+ CQ+ +P R + H V G Sbjct: 130 RPAVLQQGVTHFYHPLDAVRMHRAAQALLGENDFTSFRAAQCQSRTPWRKVKHVKVTRQG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G GK L + L +DR A EGLY Sbjct: 190 EYIVVDIKANAFVHHMVRNIVGSLMEIGCGKRNENWLAELLALRDRNLAAATARAEGLYL 249 Query: 242 DSVEY 246 SV+Y Sbjct: 250 VSVDY 254 >gi|221212470|ref|ZP_03585447.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] gi|221167569|gb|EEE00039.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD1] Length = 270 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|322388332|ref|ZP_08061936.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] gi|321141004|gb|EFX36505.1| tRNA pseudouridine synthase A [Streptococcus infantis ATCC 700779] Length = 249 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEVVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTAAGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|225377724|ref|ZP_03754945.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] gi|225210401|gb|EEG92755.1| hypothetical protein ROSEINA2194_03375 [Roseburia inulinivorans DSM 16841] Length = 245 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQ Q + G +IQG IE + + G V V G+GRTD+GVHA Sbjct: 1 MNNYKITIQYDGTRYKGWQGQNSTGLTIQGKIEAVLGQMAGHAVEVIGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + LN YL D I+++ + VD++FH+R++A +++Y Y I Sbjct: 61 QVANFHIEEHFTEGKILSYLNHYL--PDDIAVIAVEQVDERFHSRYAAKKKTYRYHIHMG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + E+ + K+LD E M+ AA +L+G HDFT+F + +RTI + Sbjct: 119 EISDVFERKYEYQYEKTLDVERMKEAASYLIGTHDFTSFCGNKKMKKTAVRTIYEINFTK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + I FL +R G+L VGDG+ +L + L++++R+ G AP GL Sbjct: 179 KGNDLWIDYRGNGFLQNMVRILTGTLIEVGDGRRAPEELPQILESKNRENAGYTAPACGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 MLMEVHY 245 >gi|271501293|ref|YP_003334318.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] gi|270344848|gb|ACZ77613.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech586] Length = 292 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVGSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 74 HFTTNAVRKDAAWTMGVNANL--PPDIAVRWVKTVDEAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSHGVTHYYLPLDADRMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTRLGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G +++ L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMDELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEY 246 +V+Y Sbjct: 252 AVDY 255 >gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] gi|8134764|sp|Q9Z9J0|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4512436|dbj|BAA75303.1| truA homologue (identity of 62% to B. subtilis ) [Bacillus halodurans] gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Bacillus halodurans C-125] Length = 263 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 3/241 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + + Y+G+ + G+Q Q N ++QG +E + + G + V +GRTD+GVHA Sbjct: 1 MKRIGLKVAYDGTDFAGYQIQPNERTVQGELESVLKNIHKGMSIRVTASGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + ALN+ L I +L + V FHAR+SA + Y YR++T Sbjct: 61 QIVHFDTSLSFPVDRWPIALNSQL--PADICVLEAADVPADFHARYSAKTKEYRYRVLTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + LD E M+ AA L+G HDF++F + + +RTI+ + Sbjct: 119 AQADVFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFCAAKAEVEDKVRTIEDVALWR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL+ +R VG+L +G GK ++ ++ K L A+ R+ G AP GL Sbjct: 179 EGDELIFSIRGNGFLYNMVRIIVGTLLEIGAGKRSAEEVAKILAARSREAAGKTAPGHGL 238 Query: 240 Y 240 Sbjct: 239 I 239 >gi|315634336|ref|ZP_07889623.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] gi|315476926|gb|EFU67671.1| tRNA pseudouridine synthase A [Aggregatibacter segnis ATCC 33393] Length = 261 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQ+Q+ +S+Q +E+AI V E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKRYFGWQKQEKVASVQAELEQAISTVANEEISIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ +VD FHARFSA R Y Y + + Sbjct: 61 IHFETTANRPEKAWSFGVNANL--PDDIAVRWAKVVDDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V+ G Sbjct: 119 RSAILPQGITHCHLELDHQLMHQAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVSRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG G L L QDR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCGNQPVEWLAWLLGQQDRTLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVLY 243 >gi|315497922|ref|YP_004086726.1| tRNA pseudouridine synthase a [Asticcacaulis excentricus CB 48] gi|315415934|gb|ADU12575.1| tRNA pseudouridine synthase A [Asticcacaulis excentricus CB 48] Length = 257 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++EY+G Y G+Q Q N ++QGS+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYSCLVEYDGRPYKGFQAQDNLPTVQGSLERAILGFSGETLRITAAGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + P ++ A+NAYL I + I++ +IVD F ARFSA R YLYRI+ R+ Sbjct: 61 VITFDLPKTYRPDVVRDAMNAYL-IPEPIAVREAAIVDDDFSARFSATGRMYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE+GR W + K LD E M AAQHL+GRHDFTTFR CQA+SPI+T+D V Sbjct: 120 APPALEQGRVWHVKKPLDAEVMADAAQHLIGRHDFTTFRDTECQAASPIKTLDIARVKRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + +RSFLH Q+RS G+L G G+WT+ D++ AL+A+DR+ CG +APPEGL Sbjct: 180 GEEIHLVFASRSFLHRQVRSMTGTLVEAGIGRWTAADVKAALEARDRRACGQVAPPEGLC 239 Query: 241 FDSVEY 246 V + Sbjct: 240 LTHVTF 245 >gi|325689043|gb|EGD31051.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK115] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAEHNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|226322792|ref|ZP_03798310.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] gi|225208773|gb|EEG91127.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758] Length = 259 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ Y GWQRQ+N ++QG +E+ I + G+ VV G+GRTDSGVHAL Sbjct: 1 MNTYRITVAYDGTAYRGWQRQENTELTVQGILERRISEIAGKKTVVSGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q L +E K LNA L + I +L++S + FHAR SA+ + Y Y+I R Sbjct: 61 QECSLYLEQEIDMDSFKKQLNALL--PEDIRVLDISREKRDFHARKSAVGKCYEYQIDLR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P +D M AA++L+G HDF+ F + +RTI + Sbjct: 119 DKMEVFHRKYRFHFPHPVDIAAMEQAAEYLMGTHDFSAFTDLKED-KDTVRTIYAVGIVY 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + FL+ +R G+L VG GK + ++ + L+A+DRK+ G AP +GL Sbjct: 178 EKDTLTLSWIGDGFLYHMVRILTGTLLDVGIGKIKAEEIPEILKAKDRKKSGFPAPAKGL 237 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 238 FLGRVFYT 245 >gi|302877741|ref|YP_003846305.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] gi|302580530|gb|ADL54541.1| tRNA pseudouridine synthase A [Gallionella capsiferriformans ES-2] Length = 255 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G Y GWQ Q G ++Q +++ A+ + V V+ AGRTD+GVHAL QV Sbjct: 1 MRIALGVEYDGKPYCGWQSQPGGRTVQDTLQSALSHIADAPVTVNAAGRTDTGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L S + + V +FHARFSA RSY Y +I + Sbjct: 61 VHFETDANRPLSAWVRGVNAMLPPSVVVRWAH--PVPDEFHARFSAQGRSYRYLLINKPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+A LD MR AA +L+G HDF+ FR+ CQA SP++ ++ D+ G Sbjct: 119 RSAIHAGKAGWFHLPLDIALMREAAGYLLGEHDFSAFRAAECQAKSPVKCMNKIDIYLNG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A +FLH +R+ VG L VG GK+ + L ++ R P P+GLY Sbjct: 179 DVLVFDLEANAFLHHMVRNIVGCLVYVGKGKYPPAWMADLLASRTRHLAAPTFSPDGLYL 238 Query: 242 DSVEY 246 ++Y Sbjct: 239 RRIQY 243 >gi|15672468|ref|NP_266642.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281490978|ref|YP_003352958.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|13878837|sp|Q9CI80|TRUA_LACLA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|12723367|gb|AAK04584.1|AE006284_2 tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis Il1403] gi|281374736|gb|ADA64256.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis KF147] gi|326406013|gb|ADZ63084.1| tRNA pseudouridine synthase A [Lactococcus lactis subsp. lactis CV56] Length = 253 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 123/249 (49%), Gaps = 3/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY I Y+G+ + G+Q Q N ++Q IEK + + E V++ G+GRTDSGVHA Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQKEIEKILTKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + + + + I++ + +V +HAR+ ++Y Y + Sbjct: 61 QVIHFDLKGKVRDLERLR-FGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENS 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ L+ E M+ A LVG HDFT F + +RTI ++ Sbjct: 120 ITRSPFQRHSKAYFRYPLNFERMQEAMSKLVGEHDFTGFTASGSSVDDKVRTIYQAEIIR 179 Query: 180 FGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ Q+R+ VG++ +G+ + + ++K L +++R GP A PEG Sbjct: 180 LDEENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRDFAGPTAAPEG 239 Query: 239 LYFDSVEYS 247 LY V+Y+ Sbjct: 240 LYLKEVKYA 248 >gi|229053988|ref|ZP_04195422.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] gi|228721406|gb|EEL72927.1| tRNA pseudouridine synthase A [Bacillus cereus AH603] Length = 252 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGIHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ ++ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIIIRQVEKKTEEFHARYGVEKKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 124 KTADVFRRNYVYQYPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIGLIE 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|149203831|ref|ZP_01880800.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] gi|149142948|gb|EDM30990.1| tRNA pseudouridine synthase A [Roseovarius sp. TM1035] Length = 258 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 160/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + S+QG++E A+ + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALRIEYDGAPFAGWQRQVDHPSVQGAVEAALARIEPGSHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L +ALN +LK ++I V + +HARFSA R YL+R+++R+ Sbjct: 61 VAHCDLTREWGTFRLSEALNYHLK-PLPVAITACVRVAEDWHARFSANERRYLFRVMSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHFD 176 AP+ L++GR W + LD + MR AQHL+G HDFTTFRS CQA+SPI+T Sbjct: 120 APVTLDRGRVWHVRPKLDIDAMRAGAQHLIGMHDFTTFRSTICQAASPIKTLDAIEISEH 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G I R+ ARSFLH Q+RS VG+L+ VG G W ++ AL A+DR CGP+ PP Sbjct: 180 ESAMGPEIHFRLRARSFLHNQVRSIVGTLERVGAGSWHPDEVRAALNARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAGVSY 249 >gi|291528184|emb|CBK93770.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 254 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ Q Sbjct: 6 QNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 66 VASFHMPKHFSKDEIFIWLNEHL--PADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGI 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K LD + M+ AA +L+G HDF F S +RTI D+ Sbjct: 124 VSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNKHMKKSTVRTIFSIDIEKT 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I FL IR G+L VGDG+ + L ++DR + G AP GL Sbjct: 184 GADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMGILASKDRAQAGYTAPACGLS 243 Query: 241 FDSVEY 246 + V+Y Sbjct: 244 LERVDY 249 >gi|325686853|gb|EGD28878.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK72] gi|332359857|gb|EGJ37671.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1056] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V + FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSEDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|118475910|ref|YP_893061.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|118415135|gb|ABK83554.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] Length = 264 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 18 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 77 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 78 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ ++R A + +G HDFT+F S +RTI ++ Sbjct: 136 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIE 195 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L VG GK + + L Q+R+ G +AP GL Sbjct: 196 QDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGL 255 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 256 YLWQVNYN 263 >gi|331266815|ref|YP_004326445.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] gi|326683487|emb|CBZ01105.1| tRNA pseudouridine synthase A [Streptococcus oralis Uo5] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + L + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 119 RPKNPLRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNDRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] gi|169258400|gb|EDS72366.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM 17244] Length = 244 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G Y GWQ Q NG S++ ++ AI + E V ++G+GRTDSGVHAL Q Sbjct: 1 MRNILITIEYDGKNYVGWQMQNNGISVEEKVKTAIEKLVKEEVKLYGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F L +N++L + I ++ ++ FHAR+SA + Y+Y I R Sbjct: 61 AASFYTNSNISADKLPYGINSFL--PEDIRVIKAEEKEEDFHARYSAKGKEYVYLIYNRS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + KGRA + LD + M+ A++ L+G HDF F S +R I D+ Sbjct: 119 IMNPIYKGRASHVFYKLDLDKMKRASKSLIGIHDFAGFMGSGSDVKSTVREIYDIDITKD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI+I++ FL+ +R V SL +G G++ +E+ L+ + R AP GLY Sbjct: 179 NDLIKIKISGSGFLYNMVRIIVASLIDIGRGRFDENRIEEILETKQRSMANVTAPAVGLY 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LNKVFY 244 >gi|306820983|ref|ZP_07454602.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550924|gb|EFM38896.1| tRNA pseudouridine synthase A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 245 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ Y GWQRQKN SIQ IE AI L+ E + V +GRTD+GVHAL Q Sbjct: 1 MRNILLEISYDGTNYSGWQRQKNAISIQEKIEDAISLICNEEINVIASGRTDAGVHALSQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F KA+N L D I IL+ VD+ F+ARFSA +++Y+Y I+ R+ Sbjct: 61 IANFSTSSSIDAKKFAKAINTKL--PDDIRILSSKEVDEDFNARFSAKKKTYIYHILNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + I + LD E M+ + L+ + + + I+TI D+ Sbjct: 119 IKNPFWDKYSMHINRKLDLELMKSNSNMLIGTHDFTSFYTYEENNPKNTIKTIYSSDIVK 178 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I + FL+ +R VG+L +G + D+ + L +DR + G A +G Sbjct: 179 IYEDILTFSITGDGFLYNMVRIIVGTLIEIGLHQKN-DDISQILMYKDRIKAGATAKAKG 237 Query: 239 LYFDSVEY 246 L+ +VEY Sbjct: 238 LFLKNVEY 245 >gi|227550954|ref|ZP_03981003.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257893717|ref|ZP_05673370.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257896582|ref|ZP_05676235.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|293379717|ref|ZP_06625853.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] gi|227179913|gb|EEI60885.1| tRNA-pseudouridine synthase I [Enterococcus faecium TX1330] gi|257830096|gb|EEV56703.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,408] gi|257833147|gb|EEV59568.1| tRNA pseudouridine synthase [Enterococcus faecium Com12] gi|292641715|gb|EFF59889.1| tRNA pseudouridine synthase A [Enterococcus faecium PC4.1] Length = 247 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|171777516|ref|ZP_02919238.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283226|gb|EDT48650.1| hypothetical protein STRINF_00067 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G+ V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQRLNSGQPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDSG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L +++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLASKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|304392304|ref|ZP_07374245.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] gi|303295408|gb|EFL89767.1| tRNA pseudouridine synthase A [Ahrensia sp. R2A130] Length = 251 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 126/251 (50%), Positives = 160/251 (63%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IIEY+G Y GWQRQ + S+QG+IE A+ + +V GAGRTD+GVHAL Q Sbjct: 1 MGRYRFIIEYDGKPYAGWQRQPDQPSVQGAIEAALGRLGEPDPIVQGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL R W L +ALNA+L+ D ++I++ D +FHARFSA +R+YLYRII Sbjct: 61 VAHSDLTRPWTGFRLAEALNAHLRKAGDPVAIIDCEPCDDEFHARFSATQRAYLYRIIDH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHF 175 +APLA++ GRAW + LD + M AA LVG HDFTTFRS CQA SP++T + Sbjct: 121 RAPLAVDAGRAWNVKTPLDVDAMNKAAARLVGEHDFTTFRSTECQARSPVKTLGTLVATR 180 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +EI ARS+LH Q+RS G L+LVG GKW+ D +L A DR C P+AP Sbjct: 181 VQRHGRSEVEITTTARSYLHNQVRSLAGCLRLVGCGKWSPDDAAASLAAMDRTACAPVAP 240 Query: 236 PEGLYFDSVEY 246 GLY SV Y Sbjct: 241 AHGLYLTSVTY 251 >gi|121534665|ref|ZP_01666486.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] gi|121306685|gb|EAX47606.1| tRNA pseudouridine synthase A [Thermosinus carboxydivorans Nor1] Length = 250 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G+ Y G+QRQ N ++Q +E+ + + G + V GA RTD+GVHA Q Sbjct: 7 QRYLKLTVAYDGTAYHGFQRQANAITVQQVLEERLATIFGHPLKVTGAARTDAGVHAYGQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + +A + L I ++ V FHARFSA + YLYRI Sbjct: 67 VVGFATSGTIPAANIVRAAKSVL--PPDIVVVKAEEVSADFHARFSARSKIYLYRIYNAA 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + AW + + LD M A Q +VG HDF+ FR+ SP+RTI Sbjct: 125 VADPFRRNYAWHVTQPLDEAAMDTAVQTVVGTHDFSAFRAAGGPPVSPVRTIYEAGCTRE 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++E R FL+ +R+ VG+L VG G+ T + L +DR G APP+GLY Sbjct: 185 GDMLEFRFWGNGFLYHMVRNLVGTLVDVGLGRLTRDGFTRILAGRDRTRAGITAPPQGLY 244 Query: 241 FDSVEY 246 + Y Sbjct: 245 LKEIFY 250 >gi|187478755|ref|YP_786779.1| tRNA pseudouridine synthase A [Bordetella avium 197N] gi|123738625|sp|Q2KYM0|TRUA_BORA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115423341|emb|CAJ49875.1| tRNA pseudouridine synthase A [Bordetella avium 197N] Length = 267 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q ++E A+ TG + AGRTD+GVHA Sbjct: 1 MTRIALGLSYDGSSWQGWQTQPHGQTVQDTLEAALGQFSGTGAPLDTLCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + +NA+L +ISI V + FHARFSA R+Y+Y + Sbjct: 61 MQVVHVDTHLNRRAESWVRGVNAFL--PSSISIHWAKEVGEDFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL RA + LD MR AAQ L+G HDF++FRS CQA P+R + D+ Sbjct: 119 GRVRPALWAHRAGWCFQPLDVTAMRQAAQALLGEHDFSSFRSSQCQARHPVRHLTRLDIA 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + A +FLH +R+ +G+L +G G+ + + L+A+DR+ P P+G Sbjct: 179 ERGSFLVFTLQANAFLHHMVRNIMGALLQIGQGRESVDWMASLLRARDRRLGAPTFSPDG 238 Query: 239 LYFDSVEY 246 LY +++Y Sbjct: 239 LYLSAIDY 246 >gi|291522074|emb|CBK80367.1| pseudouridylate synthase I [Coprococcus catus GD/7] Length = 247 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 ++IEY+GS Y GWQR + +G +IQG +E + +TGE V + GAGRTD+GVHA Sbjct: 3 RNIRLLIEYDGSRYDGWQRLGKGHGVTIQGKLEDVLSKMTGEQVELIGAGRTDAGVHAYE 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I++ + V ++FH+R++A + YLYRI Sbjct: 63 QVANFHTNSNMKCWEMKYYLNRYL--PGDIAVNRVDDVPERFHSRYNAKAKKYLYRIAIG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ W LD M+ AA LVG HDF F S S +R I D+ + Sbjct: 121 DVPCVFDRKYTWYCFDKLDVTAMKKAAALLVGEHDFKAFCSNKRTNKSTVREIYDIDIYA 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I V FL+ +R VG+L VG G+ ++ L++++R + G A +GL Sbjct: 181 DTRELQITVYGNGFLYNMVRIIVGTLIEVGKGERRPEEMTAILESRERTKAGATAAAQGL 240 Query: 240 YFDSVEY 246 + VEY Sbjct: 241 FLQEVEY 247 >gi|1644206|dbj|BAA10987.1| unknown [Bacillus subtilis] Length = 247 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ + V +GRTDSGVHA Sbjct: 1 MRLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAERWPYALNALL--PDDIAVKQAEIADDGFHARFSAVKKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ ++MR AA+H +G HDFT+F + + +RTI D Sbjct: 119 KHPDVFKRHYAYHFSYRLNVQDMREAAKHPIGTHDFTSFCAAKTEVQDKVRTIYELDWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + +++R+ FL+ +R G+L G GK + +++ L+A+DR+ AP GL Sbjct: 179 TADGLQMRITGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTAPGHGL 238 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 239 YLWNVYY 245 >gi|228989350|ref|ZP_04149341.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] gi|228995533|ref|ZP_04155201.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228764262|gb|EEM13141.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock3-17] gi|228770428|gb|EEM19001.1| tRNA pseudouridine synthase A [Bacillus pseudomycoides DSM 12442] Length = 252 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I + + + FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWMNALNTML--PDDIVVRQVEKKTEDFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ E++R A + +G HDFT+F S +RTI D+ Sbjct: 124 KNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEIDLME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|288802284|ref|ZP_06407724.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] gi|288335251|gb|EFC73686.1| tRNA pseudouridine synthase A [Prevotella melaninogenica D18] Length = 253 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 113/257 (43%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T Sbjct: 61 VAHFDTELSFDSAQLVYKVNRLL--PRDVSVSRIEPVGEDLHARFSATSRTYHYYVHT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + +LD + M AA +L+G DF F + I + Sbjct: 117 GKQPFSRQYSCEFRYALDFDKMNEAAAYLIGEKDFKCFCKTGADVKTTICNLTEARWIPA 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ + D +K + R + Sbjct: 177 NEEFALTTDNTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDDFKKIVDGGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ V+Y Sbjct: 237 AGESMPGNALFLWEVKY 253 >gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1] Length = 246 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTNKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|53716174|ref|YP_106286.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76817905|ref|YP_335930.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121597592|ref|YP_991241.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126443551|ref|YP_001063441.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126456028|ref|YP_001076342.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134278539|ref|ZP_01765253.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|167724493|ref|ZP_02407729.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei DM98] gi|167743453|ref|ZP_02416227.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 14] gi|167820639|ref|ZP_02452319.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 91] gi|167828999|ref|ZP_02460470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 9] gi|167850474|ref|ZP_02475982.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei B7210] gi|167899069|ref|ZP_02486470.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 7894] gi|167907414|ref|ZP_02494619.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei NCTC 13177] gi|167915752|ref|ZP_02502843.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 112] gi|167923592|ref|ZP_02510683.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei BCC215] gi|226195622|ref|ZP_03791209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|237508302|ref|ZP_04521017.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242312379|ref|ZP_04811396.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254186230|ref|ZP_04892748.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|254194496|ref|ZP_04900928.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|254265540|ref|ZP_04956405.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] gi|254301278|ref|ZP_04968722.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|254359267|ref|ZP_04975539.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|62901257|sp|Q62AJ2|TRUA_BURMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123597008|sp|Q3JKH3|TRUA_BURP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228685|sp|A1UZ38|TRUA_BURMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228686|sp|A3P7N2|TRUA_BURP0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166228687|sp|A3NM70|TRUA_BURP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52422144|gb|AAU45714.1| tRNA pseudouridine synthase A [Burkholderia mallei ATCC 23344] gi|76582378|gb|ABA51852.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710b] gi|121225390|gb|ABM48921.1| tRNA pseudouridine synthase A [Burkholderia mallei SAVP1] gi|126223042|gb|ABN86547.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 668] gi|126229796|gb|ABN93209.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106a] gi|134250323|gb|EBA50403.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 305] gi|148028454|gb|EDK86414.1| tRNA pseudouridine synthase A [Burkholderia mallei 2002721280] gi|157811288|gb|EDO88458.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 406e] gi|157933916|gb|EDO89586.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pasteur 52237] gi|169651247|gb|EDS83940.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei S13] gi|225932107|gb|EEH28107.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei Pakistan 9] gi|235000507|gb|EEP49931.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei MSHR346] gi|242135618|gb|EES22021.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1106b] gi|254216542|gb|EET05927.1| tRNA pseudouridine synthase A [Burkholderia pseudomallei 1710a] Length = 270 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+++ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERSLAEFAQTSLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRADFSWVRGTNAFL--PPTVAVQWAKPMPDTFHARFAAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA + LD + MR AA HLVG HDF+ FRS CQA SP++ + + G Sbjct: 119 RSPMLAGRAGWVHTPLDVDAMREAAAHLVGEHDFSAFRSSECQAKSPVKHLYQIGIRPDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ S+ L + L+++DR P PEGLY Sbjct: 179 DFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPSSWLAEVLESRDRDCAAPTFMPEGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|260592560|ref|ZP_05858018.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] gi|260535606|gb|EEX18223.1| tRNA pseudouridine synthase A [Prevotella veroralis F0319] Length = 253 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 112/257 (43%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ + E V + G GRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSTLLREEVSITGGGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L +S+ + V + HARFSA R+Y Y + T Sbjct: 61 VAHFDTDKTIACQQLVYKLNRLL--PRDVSVSQIVPVSEDLHARFSATSRTYHYYVHTT- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA +L+G DF F + I + Sbjct: 118 -KQPFSRQYSCEIHYPLDFDKMNEAADYLIGEKDFKCFCKTGADVKTTICNLTEARWIPC 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +RS VG+L VG G+ + + + + R + Sbjct: 177 KAEQALVTSDRITNWCFVISANRFLRNMVRSVVGTLVDVGRGRLSLEEFQAIVNNGSRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 237 AGESMPGNALFLWDIKY 253 >gi|255974352|ref|ZP_05424938.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|257088141|ref|ZP_05582502.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|307278161|ref|ZP_07559243.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|255967224|gb|EET97846.1| tRNA pseudouridine synthase [Enterococcus faecalis T2] gi|256996171|gb|EEU83473.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|306505150|gb|EFM74338.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0860] gi|315026898|gb|EFT38830.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2137] Length = 246 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|312129758|ref|YP_003997098.1| tRNA pseudouridine synthase a [Leadbetterella byssophila DSM 17132] gi|311906304|gb|ADQ16745.1| tRNA pseudouridine synthase A [Leadbetterella byssophila DSM 17132] Length = 251 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ + GWQ Q ++QG +EKA+ V + + G+ RTD+GVHA +Q Sbjct: 1 MRYFIEISYLGTHFHGWQIQPGADTVQGELEKALSTVLNAPISIMGSSRTDTGVHARQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL +E + + LN +L I+I N + + HARF A R Y+YRI + Sbjct: 61 AHVDLPQEIHAGYIQR-LNRFL--PKDITIKNFYPLSDEAHARFDATGRKYIYRI--LHS 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + D + M AA+ L D+ +F + ++ TI Sbjct: 116 KDSFQQWICAHYSRRPDVDAMNKAAKILFLHTDYQSFSKVKTDVTTFDCTITEAVWRYVD 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E + A FL +R+ VG+L VG GK + E + A+DR + G EGL Sbjct: 176 ERLEFHISANRFLRGMVRAVVGTLLEVGYGKIGLQEFENIILAKDRTKAGTAVKAEGLTL 235 Query: 242 DSVEY 246 + V Y Sbjct: 236 ERVYY 240 >gi|228477786|ref|ZP_04062414.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] gi|228250478|gb|EEK09692.1| tRNA pseudouridine synthase A [Streptococcus salivarius SK126] Length = 248 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 134/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I ++++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDVVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA+ LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|223933386|ref|ZP_03625373.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|330832153|ref|YP_004400978.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] gi|223897953|gb|EEF64327.1| tRNA pseudouridine synthase A [Streptococcus suis 89/1591] gi|329306376|gb|AEB80792.1| tRNA pseudouridine synthase A [Streptococcus suis ST3] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQTHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++ + V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTPEDIDVVQVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A Sbjct: 179 DQRRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRGLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|331268447|ref|YP_004394939.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329124997|gb|AEB74942.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 246 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +IIEY+GS Y GWQ+QK+ ++Q IE+AI +T + G RTD+GVHA V Sbjct: 3 KNVKLIIEYDGSNYSGWQKQKHSITVQQKIEEAISQITKTDTEIIGCSRTDAGVHARNFV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F P A+N+ L I I S V FHARF + + Y+Y I+ R+ Sbjct: 63 ANFITNSSVPPSKFKYAINSKL--PKDIVIKKSSEVSLDFHARFHSKGKKYVYTILNREE 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +++ + K L+ + M+ A+++ + + ++ S +RTI + DV Sbjct: 121 PPTIDRNVMYHFNKDLNVDAMKEASKYFIGSHEFDSFYKKSGSSVKSTLRTIYYCDVTKC 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I+ V+ FL+ +R G+L G G+ +++ + A+DR+ G PP+GL Sbjct: 181 EDVIKFTVIGEGFLYNMVRIMAGTLIEAGIGRIKPEEIKFIILAKDRERAGRSLPPQGLC 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LQEVLY 246 >gi|307131844|ref|YP_003883860.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] gi|306529373|gb|ADM99303.1| tRNA pseudouridine synthase A [Dickeya dadantii 3937] Length = 276 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANERIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD FHARFSA R Y Y I R+ Sbjct: 74 HFTTRAARKDAAWTMGVNANL--PPDIAVRWVKTVDDAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSRGVTHYYLPLDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVARQGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + + L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEY 246 SV+Y Sbjct: 252 SVDY 255 >gi|167746683|ref|ZP_02418810.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] gi|167653643|gb|EDR97772.1| hypothetical protein ANACAC_01394 [Anaerostipes caccae DSM 14662] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 1 MI--RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M+ + IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GV Sbjct: 1 MMKRNIRLKIEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA Q+A+F + + + L YL I I+ V ++FH+R +A +++Y YR Sbjct: 61 HACGQIANFHTDCSFSCREIKEYLTKYL--PSDIGIVTADEVSERFHSRLNAKQKTYQYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I E+ W P++L+ E M AA +G HDF F S+ S +RTI Sbjct: 119 IAIPGTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I + FL+ +R G+L +G G + Q++DRK+ G AP Sbjct: 179 VIEEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGTRDPESIFHVFQSKDRKDAGITAP 238 Query: 236 PEGLYFDSVEY 246 P GL+ +VEY Sbjct: 239 PHGLFLMNVEY 249 >gi|76787537|ref|YP_328824.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] gi|123602597|sp|Q3K3S9|TRUA_STRA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76562594|gb|ABA45178.1| tRNA pseudouridine synthase A [Streptococcus agalactiae A909] Length = 258 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|307709543|ref|ZP_07645997.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] gi|307619674|gb|EFN98796.1| tRNA pseudouridine synthase A [Streptococcus mitis SK564] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLAYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|308172039|ref|YP_003918744.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|307604903|emb|CBI41274.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7] gi|328551849|gb|AEB22341.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208] gi|328910104|gb|AEB61700.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 +R I Y+G + G+Q Q ++Q +EKA+ ++ V V+ +GRTDS VHA Sbjct: 1 MRMKCTIAYDGHLFNGYQVQPGKRTVQSELEKALAVIHKTDGRVPVYSSGRTDSDVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALNA L D I++ I D FHARFSA+++ Y Y + T Sbjct: 61 QVIHFDTPLSIPAEKWPFALNALL--PDDIAVKTAEIADDGFHARFSAVQKEYRYFVYTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ A+ L+ + MR A++HL+G HDFT+F ++ +RTI + Sbjct: 119 KHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCAVDTAVQDKVRTIYELEWTE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ +++R+ FL+ +R G+L G GK++ D++ L+A+DR+ G AP GL Sbjct: 179 TGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKFSPDDVKAMLEAKDREAAGRTAPGHGL 238 Query: 240 YFDSVEY 246 Y SV Y Sbjct: 239 YLWSVCY 245 >gi|270293156|ref|ZP_06199367.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] gi|270279135|gb|EFA24981.1| tRNA pseudouridine synthase A [Streptococcus sp. M143] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ V VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAVTVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QAIHFDLPYQMNEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVEQMQEAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLSV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DKTGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|329116632|ref|ZP_08245349.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] gi|326907037|gb|EGE53951.1| tRNA pseudouridine synthase A [Streptococcus parauberis NCFD 2020] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+GSG+ G+QRQ + S+Q IEK + + G+++ +HGAGRTD+GVHA Sbjct: 1 MTRYKATISYDGSGFSGFQRQPHARSVQEEIEKTLLKLYKGQVIKIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E + AL+ + D I + + V +H R+ +++Y + + Sbjct: 61 QVIHFDLPLERDIEKIRFALDT--QTPDDIDFIKVEKVADDYHCRYLKHKKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD M A + LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRNYATHYPYPLDISLMDEAIKDLVGTHDFTGFTASGTSIENKVRTISEAKLTY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ N + FL+ Q+R+ VG+L +G+ + + +++ L+ ++R+ GP A Sbjct: 179 DAKRNFLIFSFTGNGFLYKQVRNMVGTLLKIGNQRMPVSQVQRILEEKNRQLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|293556963|ref|ZP_06675523.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] gi|294618124|ref|ZP_06697719.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291595614|gb|EFF26912.1| tRNA pseudouridine synthase A [Enterococcus faecium E1679] gi|291600783|gb|EFF31075.1| tRNA pseudouridine synthase A [Enterococcus faecium E1039] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429] gi|166229846|sp|A6LLJ7|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429] Length = 244 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 126/245 (51%), Gaps = 4/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +EKA+ + E + GAGRTD+GVHA Q Sbjct: 1 MKRFAIEFSYDGTNFFGYQGQPNVRTVQGELEKALERIFKERIFTQGAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ + + I K ALNA L + + R Y +++ Sbjct: 61 VAAFNCPIDRLAAIDIKNALNANLPEDIYVKKAWEVEKNFNPRFRAKKRIYHY---LVST 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ W L+ E MRIAA++L G HDF++F+ + + + +N Sbjct: 118 NEKDVFKRNYVWHFKYKLNIEAMRIAARYLEGEHDFSSFKKGNDKKNPIRTVYRIRILNV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI IRV RSFL + +R+ VGSL VG G+WT ++K L+A+ R+E APP GL Sbjct: 178 KKELILIRVEGRSFLRSMVRNIVGSLVRVGLGQWTPEKIKKVLEARSRQEAAGTAPPHGL 237 Query: 240 YFDSV 244 Y V Sbjct: 238 YLYKV 242 >gi|56961964|ref|YP_173686.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] gi|62901228|sp|Q5WLN0|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16] Length = 261 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G+ + G+Q Q ++Q +E+A+ + G V V +GRTD+GVHA Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P ALN +L D I + N ++V+ FHAR+ A + Y Y I Sbjct: 61 QVLHFDTELTIAPERWVSALNTHL--PDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A I ++LD M+ AA+HL+G HDF+ F + + + +RTI H V Sbjct: 119 PFENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQP 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R VG+L +G GK +++++ L + R G AP GL Sbjct: 179 SEEGLLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 CLYEVDY 245 >gi|222475190|ref|YP_002563606.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] gi|254995027|ref|ZP_05277217.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Mississippi] gi|255003171|ref|ZP_05278135.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Puerto Rico] gi|255004302|ref|ZP_05279103.1| tRNA pseudouridine synthase A [Anaplasma marginale str. Virginia] gi|254789601|sp|B9KIN8|TRUA_ANAMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222419327|gb|ACM49350.1| tRNA pseudouridylate synthase A (truA) [Anaplasma marginale str. Florida] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 108/248 (43%), Positives = 153/248 (61%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ + +L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLRSDMVSIL-SLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|227891575|ref|ZP_04009380.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] gi|227866722|gb|EEJ74143.1| tRNA pseudouridine synthase A [Lactobacillus salivarius ATCC 11741] Length = 256 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + G+Q Q N ++Q +EKAI ++ E + V+G+GRTDSGVHAL Sbjct: 3 QRFKVTLAYDGTNFAGFQAQPNQRTVQFVLEKAINKMSKKDEYITVYGSGRTDSGVHALG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + LN+ L +++ IV FH+R++ + YLYR+ Sbjct: 63 QVVHFDFPHPISAKGMLRGLNSML--PLDCEVVDCKIVPNDFHSRYTTHGKRYLYRVSRG 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ LD E ++ A + G HD+++F + QA S +RTI V Sbjct: 121 EFVNPFKRLYTGHYKYPLDIEKIKEAMPDVEGTHDYSSFVASGSQAKSHVRTIYEAKVYE 180 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I FL+ Q+R V +L +G+GK D + + +DR + AP Sbjct: 181 DKVNDEIVFEFYGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYKVKDRSQARQTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLKEVYY 249 >gi|304384407|ref|ZP_07366813.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] gi|304334505|gb|EFM00792.1| tRNA pseudouridine synthase A [Prevotella marshii DSM 16973] Length = 260 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+GY GWQ Q NG S+Q +++A+ +V + V GAGRTD+GVHA R Sbjct: 1 MHRYFIHFSYDGTGYHGWQIQPNGISVQEVLQQALSVVLRREMTVTGAGRTDTGVHARRM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD+ L LN L +++ N+ V HARFSA RR+Y Y I Sbjct: 61 TAHFDIDDATDCTQLTYKLNRLL--PRDVAVENIEEVAPDLHARFSARRRTYHYYIH--F 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A ++ + + LD M AA+ L+ +DF F H + + Sbjct: 117 AKNPFKERYSCELHFPLDFNRMNEAARLLLQTNDFAAFCKSHTDVKTTFCNVTEAVWIRQ 176 Query: 181 G-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A FL +R+ VG+L VG G+ ++ D ++ + R G P +GL Sbjct: 177 TADEWYFRISADRFLRNMVRAVVGTLIDVGRGRLSTDDFRAIIETKRRTAAGESMPAKGL 236 Query: 240 YFDSVEY 246 + + +EY Sbjct: 237 FLEEIEY 243 >gi|149185872|ref|ZP_01864187.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] gi|148830433|gb|EDL48869.1| tRNA pseudouridine synthase A [Erythrobacter sp. SD-21] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IE++G+ +FG QRQ NG S+Q S+E+A F VTGE V +H AGRTD+GVHAL Sbjct: 1 MTRFALTIEFDGTPFFGLQRQDNGPSVQQSLEEAAFRVTGENVRLHSAGRTDTGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +H D+ ++ P L +ALNA D I++ + +V +HARFS RSY+YRI R+ Sbjct: 61 RSHMDIEKDIEPFRLMEALNAQ-VRPDPIAVTHCGVVPDDWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE+ R W +P+ LD E M AA+ LVG HDFTTFRS+ CQ+ SP++T+D DV Sbjct: 120 APLTLERNRLWQVPQDLDHEAMDRAAKALVGLHDFTTFRSVQCQSQSPVKTLDRLDVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VG L LVG G+W L +AL+A+DR+ G APP GLY Sbjct: 180 GEEVRIHAAARSFLHHQVRSVVGCLALVGMGRWREEQLAEALEAKDRQALGLNAPPHGLY 239 Query: 241 FDSVEY 246 F + Y Sbjct: 240 FVAATY 245 >gi|320548017|ref|ZP_08042298.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] gi|320447363|gb|EFW88125.1| tRNA pseudouridine synthase A [Streptococcus equinus ATCC 9812] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGGLFAGFQRQPSERSVQEELEKTLQKLNSGTPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + +V FH+R++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVELVSDDFHSRYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + A P LD M+ A + LVG HDFT F + + +RTI D+ Sbjct: 119 RPKNPMMRHYATHYPYPLDLALMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DEKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|323340405|ref|ZP_08080662.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] gi|323092181|gb|EFZ34796.1| tRNA pseudouridine synthase A [Lactobacillus ruminis ATCC 25644] Length = 250 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 123/251 (49%), Gaps = 7/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHA 57 M R Y + + Y+G+ + G+Q Q N ++Q +E A+ ++ + ++G+GRTD+GVHA Sbjct: 1 MTRRYKITLAYDGTNFAGFQVQPNQRTVQSVLEAAVNKMSKNSDYITIYGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + + K LN+ L ++ IV FHARF+ + Y+YR+ Sbjct: 61 LGQVVHFDFPHDIPAEGMLKGLNSML--PLACEVVGCEIVPNDFHARFTTHGKRYMYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ LD E ++ A LVG HDF++F + Q + +RTI V Sbjct: 119 RGRFTNPFKRFYTGHYKYPLDIEKIKEAMPDLVGTHDFSSFVASGSQTKNHVRTIYEATV 178 Query: 178 NSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 E FL+ Q+R V +L +G+GK D + + +DR EC AP Sbjct: 179 REDKENDEIIFEFCGNGFLYNQVRIMVATLLEIGNGKRPVHDFLRLYEVKDRNECRETAP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ASGLYLKEVYY 249 >gi|56416825|ref|YP_153899.1| tRNA pseudouridine synthase A [Anaplasma marginale str. St. Maries] gi|62901203|sp|Q5PAN6|TRUA_ANAMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56388057|gb|AAV86644.1| pseudouridylate synthase [Anaplasma marginale str. St. Maries] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 108/248 (43%), Positives = 153/248 (61%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQCVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ + +L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLRSDMVSIL-SLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L+ +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|254495151|ref|ZP_05108075.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85819501|gb|EAQ40658.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 241 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q + S+Q + A+ + + + V GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGKNYHGWQIQPDVISVQEKLNSALSTIFQQDIQVVGAGRTDTGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ + K LN+ L I + + +VD + HARF A+ RSY Y+I + Sbjct: 61 AHFDVDKNLKGDFAFK-LNSIL--PKDIVVYKVFLVDDEKHARFDAVSRSYEYKIWLGRN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L+ + + D + M AA+ L DF TF + + + + G Sbjct: 118 PFLLD-FSWQIHSQKPDLKLMNEAAKLLTEYTDFQTFSKVKTEVYTFNCDVTEAFWEQKG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK + D +++++R G P +GL+ Sbjct: 177 EELTFHISANRFLRNMVRAIVGTLLDVGFGKISIDDFRNIIESKNRGNAGLSVPAKGLFL 236 Query: 242 DSVEY 246 ++Y Sbjct: 237 TQIKY 241 >gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51] Length = 286 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPIAVVCAGRTDAGVHGCGQV 79 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSQPMPADFHARFKACARRYRYVIYNDPI 137 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 138 RPAHLAEEVTWNHRPLDVERMAQAAQSLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + + L+ +DR+E G A P GLY Sbjct: 198 QMIVLDVRATAFLHHMVRNIAGVLMAIGSGERPVSWAREVLEGRDRREGGVTAHPYGLYL 257 Query: 242 DSVEY 246 VEY Sbjct: 258 VQVEY 262 >gi|257900124|ref|ZP_05679777.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] gi|257838036|gb|EEV63110.1| tRNA pseudouridine synthase [Enterococcus faecium Com15] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|71906507|ref|YP_284094.1| tRNA pseudouridine synthase A [Dechloromonas aromatica RCB] gi|123774503|sp|Q47HQ7|TRUA_DECAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71846128|gb|AAZ45624.1| tRNA pseudouridine synthase [Dechloromonas aromatica RCB] Length = 262 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+G+ GWQ Q G ++Q ++E A+ V G V V AGRTD+GVHA QV Sbjct: 1 MRVALGIEYCGTGFHGWQSQAGGGTVQDALEAALGEVAGVPVGVLCAGRTDAGVHATHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + +N++L + +++ V + FHARFSA R Y Y ++ R Sbjct: 61 AHFDAPVDRPLTAWVRGVNSHL--PEGVAVRWAQPVAEDFHARFSARGRRYRYLLLNRPQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L +GR L+ E M+ A L+G HDF+ FR+ +CQA SP++ + +V G Sbjct: 119 RPGLWQGRVGWFHWPLELEAMQEACLRLLGEHDFSAFRAANCQAKSPVKHMSRAEVRQCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ A +FLH +R+ VG+L +G G +E LQ +DRK P P+GLYF Sbjct: 179 NMFVFDFEASAFLHHMVRNLVGTLVYIGKGTQQPDWIEALLQTKDRKLAAPTFSPDGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 RGPVY 243 >gi|254475915|ref|ZP_05089301.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] gi|214030158|gb|EEB70993.1| tRNA pseudouridine synthase A [Ruegeria sp. R11] Length = 256 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 118/250 (47%), Positives = 160/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G+ + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGAPFAGWQRQKDQPSVQGAIEDALARLEPGPHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W P L +ALN +LK ++I++ + VD +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDMAKAWDPFRLSEALNYHLK-PAPVAIVDCAQVDDDWHARFSAIERQYLFRILIRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W + LD M+ AA HLVG+HDFTTFRS CQA+SP++T+D V Sbjct: 120 APATHDAGQVWQLSHDLDVAAMQEAADHLVGQHDFTTFRSSICQAASPLKTLDELRVERV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGFSGPEIHFHVRARSFLHNQVRSFVGTLERVGAGAWDPVDVKDALEACDRAACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|332521721|ref|ZP_08398172.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] gi|332042551|gb|EGI78752.1| tRNA pseudouridine synthase A [Lacinutrix algicola 5H-3-7-4] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q +EK + + E + GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGKAYHGWQVQPNAISVQEVLEKGLSTLLKEKISTMGAGRTDAGVHAIQLF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +L LN++L + ISI N+ V HARF A+ R YLYRI Sbjct: 61 AHFDTEVIFEEHMLQYKLNSFL--PEAISIQNIFKVKADAHARFDAVSRQYLYRI--ALQ 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +A+L+ LD + ++ A + L DF F + + I G Sbjct: 117 KNPFNTEQAFLLKAKLDIDRIKEATKILFNYKDFQCFSKSNTDVKTYNCNIMKAQWEVVG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N ++ + A FL +R+ VG+L VG GK D+ +++++R E G P LY Sbjct: 177 NELQFTIKADRFLRNMVRAIVGTLINVGVGKLEVNDMHNIIKSKNRSEAGFSVPAHALYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TEVAY 241 >gi|103485743|ref|YP_615304.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] gi|123253621|sp|Q1GWK1|TRUA_SPHAL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|98975820|gb|ABF51971.1| tRNA pseudouridine synthase A [Sphingopyxis alaskensis RB2256] Length = 246 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 163/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G Y GWQRQ +G S+Q +IE+AI T E V V AGRTD+GVHA+ Sbjct: 1 MTRFALTIEYDGRPYMGWQRQAHGPSVQQAIEEAIHRFTAEEVQVLSAGRTDAGVHAIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ I+++ +V +HARF+ I RSY YRI+ R+ Sbjct: 61 RAHVDIEKPLTPFKLTEALNAQLR-PAPIAVIGCEVVPDDWHARFACIGRSYEYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +KG AW + + LD + M AAQ L+G HDFTTFRS HCQ+ SP++T+D V+ Sbjct: 120 APLTWDKGLAWQVARPLDVDAMHEAAQQLIGLHDFTTFRSAHCQSQSPVKTLDRLTVSRH 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+RS VGSL LVG GKW++ DL+ AL+A DR+ G APP+GLY Sbjct: 180 GEEVIIEAAARSFLHHQVRSMVGSLALVGHGKWSARDLKAALEAADRQALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVGAVY 245 >gi|22536285|ref|NP_687136.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76798489|ref|ZP_00780725.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77412040|ref|ZP_00788367.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] gi|42559812|sp|Q8CX20|TRUA_STRA5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22533107|gb|AAM99008.1|AE014196_4 tRNA pseudouridine synthase A [Streptococcus agalactiae 2603V/R] gi|76586154|gb|EAO62676.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 18RS21] gi|77161897|gb|EAO72881.1| tRNA pseudouridine synthase A [Streptococcus agalactiae CJB111] Length = 258 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDVGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|227888821|ref|ZP_04006626.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] gi|227850658|gb|EEJ60744.1| tRNA pseudouridine synthase A [Lactobacillus johnsonii ATCC 33200] Length = 263 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Q Sbjct: 3 TRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALNA + IVD+ FH ++S + Y Y + Sbjct: 63 VIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFESEIVDEDFHVQYSTKGKWYRYVVDQH 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 121 RFTDPFNRFYTGHYPYPLDISLMQQAARDLIGEHDFTSFAASGGQIVDKVRTIYYVNITP 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I + FL+ +R VG+L +G+ K D+ + L+ +DR+E AP Sbjct: 181 DPDKKQIIFDFIGNGFLYNMVRILVGTLLEIGNQKRPVDDIPRVLKTKDRQEVRTTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLQHVFY 249 >gi|330810793|ref|YP_004355255.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378901|gb|AEA70251.1| tRNA-pseudouridine synthase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 284 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EYNGS Y GWQRQ ++Q ++E A+ V V +H AGRTD+GVHA Q Sbjct: 17 FRIALGVEYNGSRYRGWQRQASGVLTVQETLENALSKVADSPVSLHCAGRTDAGVHACGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 77 VVHFDTQVERSMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQ 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E M AAQ+LVG HDF+ FR+ CQA SPI+ + H V Sbjct: 135 IRPAHLNEEITWNHRPLDVERMAEAAQYLVGVHDFSAFRAGQCQAKSPIKELHHLRVTRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + + A +FLH +R+ G L +G G+ +++ L ++ R+ G A P GLY Sbjct: 195 GKMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWIKEVLDSRIRRSGGVTAHPFGLY 254 Query: 241 FDSVEY 246 VEY Sbjct: 255 LVQVEY 260 >gi|322374222|ref|ZP_08048755.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] gi|321276927|gb|EFX53999.1| tRNA pseudouridine synthase A [Streptococcus sp. C150] Length = 248 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ + SIQ IEK + + +G VVVHGAGRTD+GVHA Sbjct: 1 MVRYKAIISYDGTLFSGFQRQPDARSIQEEIEKTLLRLNSGTPVVVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V + FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEDFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA+ LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAKDLVGTHDFTGFTASGTSVENKVRTITQARVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPISQVKTVLESCDRNLAGPTASGN 238 Query: 238 GLYFDSVEY 246 GLY ++Y Sbjct: 239 GLYLKEIKY 247 >gi|25010174|ref|NP_734569.1| tRNA pseudouridine synthase A [Streptococcus agalactiae NEM316] gi|77414646|ref|ZP_00790784.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|42559816|sp|Q8E7Q5|TRUA_STRA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23094525|emb|CAD45744.1| Unknown [Streptococcus agalactiae NEM316] gi|77159310|gb|EAO70483.1| tRNA pseudouridine synthase A [Streptococcus agalactiae 515] gi|319744038|gb|EFV96416.1| tRNA pseudouridine synthase A [Streptococcus agalactiae ATCC 13813] Length = 258 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|163756865|ref|ZP_02163974.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161323254|gb|EDP94594.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 250 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQ Q N S+Q IEKA+ ++ + + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYNGEKYHGWQNQPNAISVQEVIEKALSILLRSNIAIVGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + L LN++L ++I + V + HARF A R+Y Y I++ + Sbjct: 61 AHFDTDVVFNRAELTFKLNSFL--PKDVAIQQIHTVKEDAHARFDATGRTYEYWIVSEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + K LD + M AA+ L DF F H + I ++ G Sbjct: 119 --PFYTQSAHTVYKKLDVDLMNKAAKKLFNYQDFKCFSKTHTDVKTYICQLEKAVWEQKG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + A FL +R+ VG+L VG GK + ++ + ++DR + G P + LY Sbjct: 177 ELLVFTIRADRFLRNMVRAIVGTLLEVGLGKLSIEGFKEIIASRDRNKAGTSVPGKALYL 236 Query: 242 DSVEY 246 +V Y Sbjct: 237 TAVTY 241 >gi|257888836|ref|ZP_05668489.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] gi|257824892|gb|EEV51822.1| tRNA pseudouridine synthase [Enterococcus faecium 1,141,733] Length = 246 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNTEIELSEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKARQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|256847793|ref|ZP_05553238.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] gi|256715482|gb|EEU30458.1| tRNA pseudouridine synthase A [Lactobacillus coleohominis 101-4-CHN] Length = 253 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 MIRY + Y+G+ + G+Q Q + +I+ +++ + + + + G+GRTD+GVHA Sbjct: 1 MIRYKITFAYDGTNFSGFQIQPHKRTIEQTLKTIVNRMAKNPDPAISIIGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVAHFD + +ALN+ L I + IV +FHAR++A R+ Y YR+ Sbjct: 61 LNQVAHFDFPYHIPEQSMVRALNSQL--PLDIIVKKAEIVSNEFHARYNAHRKRYRYRVT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D +M AAQ LVG HDFT+F + QA S IRTI V Sbjct: 119 QGEFVDPFKRNYTAHFKYPVDIAHMNRAAQDLVGTHDFTSFVASGSQAKSNIRTIYEAKV 178 Query: 178 NSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + E V FL+ Q+R V L +G G+ D+++ L A+DR+E AP Sbjct: 179 YYEDHDHEVIFEFVGNGFLYNQVRIMVALLLEIGSGQRPVDDVQRVLAARDRQEARMTAP 238 Query: 236 PEGLYFDSVEY 246 GLY +V+Y Sbjct: 239 ASGLYLVNVDY 249 >gi|327462829|gb|EGF09151.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1057] Length = 249 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRH 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLFKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|77409358|ref|ZP_00786059.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] gi|77172030|gb|EAO75198.1| tRNA pseudouridine synthase A [Streptococcus agalactiae COH1] Length = 258 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V+++GAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIYGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMQEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|126725547|ref|ZP_01741389.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] gi|126704751|gb|EBA03842.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2150] Length = 265 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 109/250 (43%), Positives = 152/250 (60%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ ++QG+IE AI + + AGRTD+GVHA+ Q Sbjct: 1 MPRYALKIEYHGAPFAGWQRQPELQTVQGAIEAAIRKLEAGNAGITAAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + W L +A+N +LK ++I+ + VD FHARF A+ R YL+ ++ R+ Sbjct: 61 VAHVDMAKSWDLFRLTEAINHHLK-PLPVAIVACAQVDDDFHARFGALERQYLFSVVARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHFD 176 + ++G W + + LD M+ A HL+GRHDFTTFRS CQA SP+RT Sbjct: 120 SLAVHDQGLVWQVRQPLDLARMKEGAAHLLGRHDFTTFRSTKCQADSPVRTLDELSIREI 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G E + ARSFLH Q+RSFVG+L+ VG G ++ + L+A DR CGP+APP Sbjct: 180 ARPVGQEFEFTIRARSFLHNQVRSFVGTLEPVGAGWVHPNEVGEMLRAADRTACGPVAPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLKHVVY 249 >gi|294669057|ref|ZP_06734143.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309049|gb|EFE50292.1| tRNA pseudouridine synthase A [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 326 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+GS +FGWQ+Q +G S+Q ++E A+ + GE V V AGRTD+GVHA QV Sbjct: 62 RWALTLSYDGSRFFGWQKQADGVVSVQAALESALSQIAGETVNVVAAGRTDTGVHATAQV 121 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + +N+ L +++ V FHARF A R Y Y + + Sbjct: 122 VHFDTAAERGEQSWIRGVNSLL--PQGVAVWQAKRVASHFHARFDAFGRRYRYVLQSSPV 179 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L R LD M+ AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 180 RSPLLAARVGWTHTPLDFAAMQAAAALLVGEHDFSSFRASQCQAKSPVKTLYSVVLHGTP 239 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + + +FLH +R+ VG+L VG+G+ + + L + R + P P+GLY Sbjct: 240 QLMALDLHGNAFLHHMVRNIVGALVYVGNGRLSVQGFAELLAEKSRLKAPPTFMPDGLYL 299 Query: 242 DSVEY 246 V+Y Sbjct: 300 TGVDY 304 >gi|332366230|gb|EGJ43985.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK355] Length = 249 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYDFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L+ +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILEEKDRYLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|317471507|ref|ZP_07930858.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] gi|316901002|gb|EFV22965.1| tRNA pseudouridine synthase [Anaerostipes sp. 3_2_56FAA] Length = 249 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 7/251 (2%) Query: 1 MI--RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M+ + IEY+G+ Y GWQ+ N S+IQG +E + +TGE + + G+GRTD+GV Sbjct: 1 MMKRNIRLKIEYDGTRYQGWQKLGKNANASTIQGKLESVLSKMTGESIQIIGSGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA Q+A+F + + + L YL I I+ V ++FH+R +A +++Y YR Sbjct: 61 HACGQIANFHTDCSFSCREIKEYLTKYL--PSDIGIVTADEVSERFHSRLNAKQKTYQYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I E+ W P++L+ E M AA +G HDF F S+ S +RTI Sbjct: 119 IAIPGTVNVFERKYLWKYPETLNIEKMNKAAAFCLGTHDFLGFSSVKKTKKSTVRTIYSI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + I + FL+ +R G+L +G G + Q++DRK+ G AP Sbjct: 179 VIEEEHSEIRLSFTGDGFLYNMVRILTGTLAEIGAGSRDPESIFHVFQSKDRKDAGITAP 238 Query: 236 PEGLYFDSVEY 246 P+GL+ +VEY Sbjct: 239 PQGLFLMNVEY 249 >gi|69244266|ref|ZP_00602734.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257878927|ref|ZP_05658580.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257881556|ref|ZP_05661209.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257890781|ref|ZP_05670434.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|258615438|ref|ZP_05713208.1| tRNA pseudouridine synthase A [Enterococcus faecium DO] gi|261206813|ref|ZP_05921504.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289567364|ref|ZP_06447735.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|293563155|ref|ZP_06677615.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|293568529|ref|ZP_06679849.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|294614075|ref|ZP_06694002.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|294620867|ref|ZP_06700069.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|314939024|ref|ZP_07846289.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|314943424|ref|ZP_07850191.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|314948177|ref|ZP_07851572.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] gi|314952740|ref|ZP_07855717.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|314991371|ref|ZP_07856849.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|314995418|ref|ZP_07860520.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|68196452|gb|EAN10879.1| tRNA pseudouridine synthase [Enterococcus faecium DO] gi|257813155|gb|EEV41913.1| tRNA pseudouridine synthase [Enterococcus faecium 1,230,933] gi|257817214|gb|EEV44542.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,502] gi|257827141|gb|EEV53767.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,410] gi|260078943|gb|EEW66643.1| tRNA pseudouridine synthase [Enterococcus faecium TC 6] gi|289160842|gb|EFD08771.1| tRNA pseudouridine synthase A [Enterococcus faecium D344SRF] gi|291588865|gb|EFF20693.1| tRNA pseudouridine synthase A [Enterococcus faecium E1071] gi|291593065|gb|EFF24647.1| tRNA pseudouridine synthase A [Enterococcus faecium E1636] gi|291599569|gb|EFF30584.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291604885|gb|EFF34359.1| tRNA pseudouridine synthase A [Enterococcus faecium E1162] gi|313590351|gb|EFR69196.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a01] gi|313594045|gb|EFR72890.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133B] gi|313595146|gb|EFR73991.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133A] gi|313597796|gb|EFR76641.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133C] gi|313641733|gb|EFS06313.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0133a04] gi|313645389|gb|EFS09969.1| tRNA pseudouridine synthase A [Enterococcus faecium TX0082] Length = 246 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|49083216|gb|AAT50973.1| PA3114 [synthetic construct] Length = 286 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 129/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEY GS Y GWQRQ+ S+Q ++E+A V E V V AGRTD+ VHA QV Sbjct: 19 RIALGIEYKGSRYRGWQRQEAGVPSVQEALERASSKVAAEPVGVICAGRTDAAVHASGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E NA L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VHFDTAVERPLKAWVMGTNANL--PADISVTWARVMPAHFHARFSAMARRYRYAIYNDPI 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD MR AAQ LVG HDFT+FR++ CQA SP++T+ H + G Sbjct: 137 RPAHLAEEVTWNHRPLDIGRMREAAQVLVGTHDFTSFRAVQCQAKSPVKTMHHVRLLEHG 196 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI + + +FLH +R+ G L +G G+ ++ L+A+DR+ G A P GLY Sbjct: 197 RLIVLDIRGNAFLHHMVRNIAGVLMTIGAGERPIEWAKEVLEARDRRAGGVTAHPYGLYL 256 Query: 242 DSVEY 246 VEY Sbjct: 257 VRVEY 261 >gi|330718940|ref|ZP_08313540.1| tRNA pseudouridine synthase A [Leuconostoc fallax KCTC 3537] Length = 250 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 128/252 (50%), Gaps = 7/252 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M RY I+ Y+GSG+FG+Q Q + ++QG + K + + + V GA RTD+GVHA Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQNDVRTVQGELNKVVNQMAKNPATPIRVIGASRTDTGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV +FDL + K LN L I I + IV+ FHARF++ + Y YR+ Sbjct: 61 LGQVINFDLPFNIPAASVRKGLNTLL--PRDIMIREVEIVNDDFHARFNSHHKRYFYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ ++ A LD + + A L+G HDF +F + Q + IR I D+ Sbjct: 119 TQDFVDPFKRKYAGHFHWPLDIQRIEKALPDLLGEHDFASFAASGNQTQTTIRRITRADI 178 Query: 178 NSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + E +FL+ QIR VG L +G GK D+++ ++ +DR + A Sbjct: 179 INKPDEQEIVFIFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIQRLIEVKDRSQARFTAA 238 Query: 236 PEGLYFDSVEYS 247 GLY D + YS Sbjct: 239 AAGLYLDEISYS 250 >gi|325279339|ref|YP_004251881.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] gi|324311148|gb|ADY31701.1| tRNA pseudouridine synthase A [Odoribacter splanchnicus DSM 20712] Length = 245 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY + + YNGS Y GWQ Q SS+Q I +A+ + + + V GAGRTD+GVHA Sbjct: 1 MVRYFIELAYNGSRYHGWQIQPGASSVQEEINRALSTLLRQDIYVVGAGRTDTGVHASFF 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ E P + LN L I+I + V HARFSAI R+Y Y I Sbjct: 61 VAHFDIECELPEPQQVVYKLNGLL--DKDIAIYKIYRVPMDKHARFSAISRTYKYYI--D 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AW D + M A + L DFT+F +H + I Sbjct: 117 KTKDPFTYPFAWKAYPLPDIQTMNEACRVLFDYTDFTSFSKLHTDVKTNNCIIYEAQWEE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + V A FL +R+ VG+L VG GK T D+ K +++++R G P + L Sbjct: 177 TDKQLIFTVKANRFLRNMVRAIVGTLIDVGRGKLTPEDVRKIIESKNRCNAGTSVPAQAL 236 Query: 240 YFDSVEY 246 + +EY Sbjct: 237 FLCHIEY 243 >gi|42527777|ref|NP_972875.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|51316703|sp|Q73KE3|TRUA_TREDE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41818605|gb|AAS12794.1| tRNA pseudouridine synthase A [Treponema denticola ATCC 35405] gi|325474992|gb|EGC78178.1| tRNA pseudouridine synthase A [Treponema denticola F0402] Length = 268 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + I Y+G+ + GWQ+Q ++QG +EKA+ + + +G+GRTDSGVH Sbjct: 8 KNILLTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVH 67 Query: 57 ALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQ +F + + ALN+ L I +++ + V HARF+A+ R+Y Y+ Sbjct: 68 AARQAVNFFCDIKSMRASNFLPALNSIL--PKDIRVMDAAEVSPLLHARFNALSRTYRYK 125 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + A E+ W I + D + A L G D T F + Q+ S R I Sbjct: 126 IKCGKTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKA 185 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A +FL +RS VG+L + + + D + L+++ R++ GP AP Sbjct: 186 VFFIENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAP 245 Query: 236 PEGLYFDSVEY 246 P+GL+ S+EY Sbjct: 246 PQGLFLWSIEY 256 >gi|229003158|ref|ZP_04161004.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] gi|228758121|gb|EEM07320.1| tRNA pseudouridine synthase A [Bacillus mycoides Rock1-4] Length = 252 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MERIKCTVAYDGINFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHARG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I + + + FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWMNALNTML--PDDIVVRQVEKKIEDFHARYGVERKEYRYRVLLS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + P L+ E++R A + +G HDFT+F S +RTI D+ Sbjct: 124 KNADVFRRNYVYQYPYPLEIESIRKAIPYFIGTHDFTSFCSTKTDKKDKVRTIYEIDLME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + R V FL+ +R VG+L +G GK + + L+ QDR+ G + P GL Sbjct: 184 QDDELIFRFVGNGFLYNMVRIIVGTLLSIGQGKMVPDSIPEILKKQDRRFAGKMVPGHGL 243 Query: 240 YFDSVEYS 247 Y V Y+ Sbjct: 244 YLWQVNYN 251 >gi|149797294|ref|YP_001294664.1| tRNA-pseudouridine synthase A [Symbiobacterium thermophilum IAM 14863] Length = 267 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG--AGRTDSGVHAL 58 M +I+ Y+G+ Y G+QRQ NG +IQ +E+A+ VTGE + G AGRTD+GVHA Sbjct: 1 MRTIKLILAYDGTAYAGFQRQPNGITIQQRLEEALRAVTGEPDLRIGAAAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H ALN +L D I+++ FHAR+ A + Y Y Sbjct: 61 GQVVHLRTYATIPIDRWPAALNGHL--PDDIAVIGAEEAPPDFHARYWAREKRYRYTFCL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + ++ + +D + MR AA LVGRHDF FR+ A + +RTI + Sbjct: 119 SPYRLPMARLYSYHWHRPVDVDAMRRAAALLVGRHDFAAFRATGGSARTTVRTITRLTLT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + V A FL+ +R G+L VG G+ + + +AL+ R++ G PP G Sbjct: 179 EEPPFLHLDVTADGFLYNMVRIIAGTLLEVGAGRRSLDRVAQALRHGRREDAGRTLPPHG 238 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 239 LCLEEVVY 246 >gi|157826343|ref|YP_001494063.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] gi|166228757|sp|A8GQ80|TRUA_RICAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157800301|gb|ABV75555.1| tRNA pseudouridine synthase A [Rickettsia akari str. Hartford] Length = 245 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 108/246 (43%), Positives = 152/246 (61%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQRQ S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 1 MYRYKITIEYLGTNLAGWQRQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + + +IV FHARFSA R Y+YRII R Sbjct: 61 VAHFDLSKYLEPHKIITAINYF-ARPYAVVVWHCAIVLNDFHARFSATSRHYIYRIINRP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ AA +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 120 YPSVIDLNRAWWISSPLDVLAMQKAAAYLLGKHDFTSFRASSCQSKSPIKTLTELNIVKG 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK G AP GLY Sbjct: 180 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEHIKDVLEAKDRKAAGLTAPAYGLY 239 Query: 241 FDSVEY 246 F EY Sbjct: 240 FVKTEY 245 >gi|302346677|ref|YP_003814975.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] gi|302150885|gb|ADK97146.1| tRNA pseudouridine synthase A [Prevotella melaninogenica ATCC 25845] Length = 253 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E A+ + E + + GAGRTD+GVH Sbjct: 1 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHALSTILRESIAITGAGRTDAGVHGRMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L +N L +S+ + V + HARFSA R+Y Y + T Sbjct: 61 VAHFDTELSFDCAQLVYKVNRLL--PRDVSVSRIEPVGEDLHARFSATSRTYHYYVHT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + SLD + M AA +L+G DF F + I + Sbjct: 117 GKQPFSRQYSCALHYSLDFDKMNEAAAYLIGEKDFKCFCKAGADVKTTICNLTEARWIPT 176 Query: 181 GNL-----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + A FL +R+ VG+L VG G+ + + +K + R + Sbjct: 177 NDEFALATDDTVTNWCFVITANRFLRNMVRAVVGTLVEVGRGRLSLDEFKKIVDGGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ V+Y Sbjct: 237 AGESMPGNALFLWEVKY 253 >gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619] Length = 284 Score = 182 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q Sbjct: 17 TRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSKVANEPITVVCAGRTDAGVHGCGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L IS++ + FHARF A R Y Y I Sbjct: 77 IVHFDTRANRDERAWTLGTNFNL--PHDISVVWSRPMPADFHARFKATARRYRYVIYNDP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V Sbjct: 135 IRPAHLAEEVTWNHRPLDVERMADAAQFLLGTHDFSAFRASQCQAKSPIKHIHHLRVTRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + V A +FLH +R+ G L +G G+ + + L+ ++R+E G A P GLY Sbjct: 195 GQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPAGWAREVLEGRNRREGGVTAHPYGLY 254 Query: 241 FDSVEY 246 VEY Sbjct: 255 LVQVEY 260 >gi|332359236|gb|EGJ37057.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK49] Length = 249 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELSLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERKFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|188533312|ref|YP_001907109.1| tRNA pseudouridine synthase A [Erwinia tasmaniensis Et1/99] gi|188028354|emb|CAO96215.1| tRNA pseudouridylate synthase I [Erwinia tasmaniensis Et1/99] Length = 271 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 11 VKLALGIEYDGSRYYGWQRQNEVRSVQEKLEKALAKVADCPVNVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 71 VHFETTAQRKDAAWTLGVNANL--PADIAVRWVKAVPDEFHARFSATARRYRYIIYNQRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P+R + H +V+ G Sbjct: 129 RPAILAGGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPMRNVIHLNVSRHG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + + A+DRK A EGLY Sbjct: 189 AYVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPEGWMRELMIARDRKLAAATARAEGLYL 248 Query: 242 DSVEY 246 +V+Y Sbjct: 249 VAVDY 253 >gi|329849464|ref|ZP_08264310.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] gi|328841375|gb|EGF90945.1| tRNA pseudouridine synthase A [Asticcacaulis biprosthecum C19] Length = 257 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 120/246 (48%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G Y G+Q Q + ++Q S+E+AI +GE + + AGRTD+GVHA Q Sbjct: 1 MPRYRCLIEYDGRPYKGFQAQGDHPTVQASLERAILGFSGEALRITAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL + + + A+NA+L + +S+L VD +F ARFSA R YLYRI+TR+ Sbjct: 61 VVSFDLSKAFKADTVRDAMNAFLAR-EPVSVLAAEQVDDEFSARFSATGRMYLYRILTRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP AL+ GR W + K LD E M AA+ LVG HDFTTFR + CQA SP++T+D V F Sbjct: 120 APPALDMGRVWHVKKPLDAEVMAQAAKALVGTHDFTTFRHVECQAKSPVKTLDIARVKRF 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS G+L G G+W D+ +AL A+DR CG +APPEGLY Sbjct: 180 GDEIHLVFAARSFLHRQVRSMTGTLVEAGIGRWDIADVAEALAAKDRAACGQVAPPEGLY 239 Query: 241 FDSVEY 246 V Y Sbjct: 240 LTHVTY 245 >gi|315221272|ref|ZP_07863195.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] gi|315189631|gb|EFU23323.1| tRNA pseudouridine synthase A [Streptococcus anginosus F0211] Length = 249 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + +G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGHGFAGFQRQLHARSVQEEIEKTLTKINSGASVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V++ FH+R+ ++Y + + Sbjct: 61 QVIHFDLPQKRDGEKLRFALDT--QTPEDIDFISVEEVNEAFHSRYCKHSKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD + A + L G HDFT F + + IRTI Sbjct: 119 RPKNPMMRYYATHYPYPLDLSLIEEAIEKLEGTHDFTGFTASGTSVENKIRTITEARLVF 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ QIR+ VG+L +G+G+ +++ L +DR GP A P Sbjct: 179 DEKRNFLMFTFSGNGFLYKQIRNMVGTLLKIGNGRMPVEQIDRILTEKDRHLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|325695572|gb|EGD37472.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK150] Length = 249 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|126737019|ref|ZP_01752754.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] gi|126721604|gb|EBA18307.1| tRNA pseudouridine synthase A [Roseobacter sp. SK209-2-6] Length = 255 Score = 182 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 119/250 (47%), Positives = 161/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQK+ S+QG+IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDLPSVQGAIEDALSRLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +LK ++IL+ + VD+ +HARFSAI R YL+RI+ R+ Sbjct: 61 VAHCDLQKDWDPFRLSEALNYHLK-PAPVAILDCAGVDEDWHARFSAIERQYLFRILMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G+ W I LD M+ AA HL+G HDFTTFRS CQA+SP +T+D + + Sbjct: 120 APATHDAGQVWQINHELDVAAMQEAADHLIGNHDFTTFRSSICQAASPQKTLDELRIETV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + V ARSFLH Q+RSFVG+L+ VG G W D++ AL+A DR CGP+ P Sbjct: 180 QGLSGPEVHFHVRARSFLHNQVRSFVGTLERVGAGSWEPLDVKHALEACDRSACGPVCPG 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLARVGY 249 >gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028] Length = 246 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ Y GWQ Q G +IQG+IE + + GE+V VHG+GRTDSGVHAL Q Sbjct: 1 MPRIRLTVAYVGTRYQGWQIQGRGETIQGAIEDKLARICGELVRVHGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ + +ALNA L D ISIL FHARFS + Y Y + T Sbjct: 61 VAHFDVPESKRHIPWRQALNAML--PDDISILEAREAQDDFHARFSVRSKRYAYTLWTEP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT--IDHFDVN 178 ++ + LD E M AA+ L G HDF F++ + +RT Sbjct: 119 RFTMPQRAPFVWPVRGLDFEAMDQAAEVLAGTHDFAAFQNAGTEIKGTVRTLEPIVRAPG 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + R A FL +R+ +G L VG G D+ L+ DR++ AP G Sbjct: 179 THSAEWVFRFQADGFLKQMVRNLMGLLVEVGRGGLAPADVRPILEGCDRRKAPATAPARG 238 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 239 LTLEEVMY 246 >gi|295694868|ref|YP_003588106.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] gi|295410470|gb|ADG04962.1| tRNA pseudouridine synthase A [Bacillus tusciae DSM 2912] Length = 277 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ Y G+QRQ ++QG +E A+ + G V + GAGRTD+GVHA QV Sbjct: 1 MYVKAKVGYDGTDYHGFQRQPGLRTVQGVLEGALGELAGREVSIVGAGRTDAGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F+ L + L ++ + + + NL + FH RFSA+ + Y Y + Sbjct: 61 IAFEWPGPIPWQRLERVLLR--RLPEDLVVSNLEPAPESFHPRFSAVGKCYRYTLDQGVY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + W +P +D +MR AA G HD+T+F + + +RT+ + Sbjct: 119 PSVFLRRYTWHVPTQMDLGSMRRAALAAAGTHDYTSFCAASTPVQNKVRTVYAIRLAEEP 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R VG+L VG GK + + L A+DR+ G AP +GL Sbjct: 179 PFVHLYVFGNGFLYQMVRILVGTLVEVGIGKRSVESISGILAARDRRAAGVTAPAKGLTL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 WDVYY 243 >gi|221640010|ref|YP_002526272.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] gi|254764862|sp|B9KKX4|TRUA_RHOSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221160791|gb|ACM01771.1| tRNA pseudouridine synthase A [Rhodobacter sphaeroides KD131] Length = 255 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 123/250 (49%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ +S+QG+IE A+ + + AGRTD+GVHA Q Sbjct: 1 MPRYALRIEYDGGPFAGWQRQAAQASVQGAIETALGRLELGPHTIAAAGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW P L ALNA+LK ++I+ + V ++FHARFSA+ R YL+R++ R+ Sbjct: 61 VAHCDLAREWDPFRLAGALNAHLK-PLPVAIVAAARVSEEFHARFSAVERRYLFRLLARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 AP ++GR W +P LD E MR A HLVGRHDFTTFR+ CQA+SPI+T+D Sbjct: 120 APEVHDRGRVWRVPHPLDAEAMRAGAAHLVGRHDFTTFRAAGCQAASPIKTLDALTLETV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G + ARSFLH Q+RS VG+L+ VG G WT + +AL A+DR CGP+ PP Sbjct: 180 EGANGTEYRFHLRARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLTGVGY 249 >gi|293390012|ref|ZP_06634346.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950546|gb|EFE00665.1| tRNA pseudouridine synthase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 261 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G YFGWQRQ+ +SIQ +E+AI ++ E + + AGRTDSGVHA QV Sbjct: 1 MKIALGVEYDGKHYFGWQRQEKVASIQAELERAISVIANEDIGIFCAGRTDSGVHAAGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L D I++ +V+ FHARFSA R Y Y + + Sbjct: 61 IHFETTAQRPEKAWSFGVNANL--PDDIAVRWAKVVEDDFHARFSATARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+++P R + H +V G Sbjct: 119 RSAILPQGVTHCHLELDHQLMHDAGQALLGENDFSSFRAAQCQSNTPWRNVHHLNVTRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL VG ++ L+ +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEVGCCNQPVEWMKWLLEQKDRALAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVIY 243 >gi|257886188|ref|ZP_05665841.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] gi|257822044|gb|EEV49174.1| tRNA pseudouridine synthase [Enterococcus faecium 1,231,501] Length = 247 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FH+R++A+ + Y Y + Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHSRYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + LVG HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLDAACEKLVGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTGAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|134293154|ref|YP_001116890.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] gi|166228688|sp|A4JMC2|TRUA_BURVG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|134136311|gb|ABO57425.1| tRNA pseudouridine synthase A [Burkholderia vietnamiensis G4] Length = 270 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VHFDTALDRAEFSWVRGTNAFL--PPTVSVQWAKAMPDTFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAVHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|81429336|ref|YP_396337.1| tRNA pseudouridine synthase A [Lactobacillus sakei subsp. sakei 23K] gi|123742201|sp|Q38UV3|TRUA_LACSS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78610979|emb|CAI56031.1| tRNA pseudouridylate synthase A (Pseudouridylate synthase I) [Lactobacillus sakei subsp. sakei 23K] Length = 249 Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+G+ + G+Q Q ++QG++EKA+ ++ G + V+G+GRTDSGVHA+ Q Sbjct: 3 QRYRVTVAYDGTDFAGFQVQPKQRTVQGTLEKALTKMSKGAYIQVYGSGRTDSGVHAMGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + +ALN+ L + +++ + D FHARFS + + Y+YR+ Sbjct: 63 VVHFDYPSELPAKSMLRALNSLL--PLDMEVVDSQLADDDFHARFSTVGKRYMYRVDLGH 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ P +D E ++ A ++G HD+T+F + +RTI V Sbjct: 121 YTNPFKRRYTGHYPYPIDVERIKAALSDVMGTHDYTSFAAAGGVIKDKVRTIYEATVVYN 180 Query: 181 GNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 E FL+ +R V +L +G+G+ D + + +DR++ AP G Sbjct: 181 EAENELIFEFHGNGFLYNMVRILVATLLEIGNGRRDVHDFLRLYEVKDRQQARSTAPASG 240 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 241 LYLKEVYY 248 >gi|238923689|ref|YP_002937205.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238875364|gb|ACR75071.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 276 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ QK+ +IQG ++ + + G+ V V G+GRTD+GVHA+ Q Sbjct: 28 QNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 87 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + + + + LN +L I++ ++S V +FHAR++A+ ++Y+Y I T Sbjct: 88 VASFHMPKHFSKDEIFIWLNEHL--PADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGI 145 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K LD + M+ AA +L+G HDF F S +RTI D+ Sbjct: 146 VSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSIDIEKT 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I FL IR G+L VGDG+ + + L ++DR + G AP GL Sbjct: 206 GADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAPACGLR 265 Query: 241 FDSVEY 246 + V+Y Sbjct: 266 LERVDY 271 >gi|161521167|ref|YP_001584594.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189352656|ref|YP_001948283.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|42559801|sp|Q83WJ5|TRUA_BURM1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28971662|dbj|BAC65262.1| tRNA pseudouridine synthase [Burkholderia multivorans] gi|160345217|gb|ABX18302.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] gi|189336678|dbj|BAG45747.1| tRNA pseudouridine synthase A [Burkholderia multivorans ATCC 17616] Length = 270 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKSMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHLYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L +DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGRDRNRAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|187929218|ref|YP_001899705.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] gi|238689527|sp|B2U6Z1|TRUA_RALPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187726108|gb|ACD27273.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12J] Length = 274 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q ++E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDALESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQEMPEDFHARFSAHRRTYYYALTFGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + +A + D M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEDKAGYVMLPPGQSLDVAAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSIE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P P Sbjct: 179 VRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|322517723|ref|ZP_08070585.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] gi|322123654|gb|EFX95247.1| tRNA pseudouridine synthase A [Streptococcus vestibularis ATCC 49124] Length = 249 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|49473750|ref|YP_031792.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] gi|51316599|sp|Q6G1G9|TRUA_BARQU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49239253|emb|CAF25574.1| tRNA pseudouridine synthase A [Bartonella quintana str. Toulouse] Length = 247 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 167/247 (67%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+GS Y GWQRQ +IQ ++E+AIF +G+ + AGRTD+GVHA Q Sbjct: 1 MPRFKLTLEYDGSNYAGWQRQAELHTIQSALEQAIFHFSGQQLTTTTAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D ++ W + ALNAYL+ + I++LN+ V F ARFSAI+R YL++I+ R Sbjct: 61 VAHVDFIKNWQTYTVRDALNAYLQKQGEEIAVLNVQNVPDNFDARFSAIKRHYLFKILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +P AL R W IPK L+ + M AAQ LVG+HDFTTFRS HCQA SPIRT++ DV Sbjct: 121 LSPPALNIKRVWWIPKPLNVDAMHQAAQKLVGQHDFTTFRSAHCQAKSPIRTLERLDVYR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + ARSFLH QIRSF GSL VG G+WT+ DLE AL A+DRK CG +APP GL Sbjct: 181 EGEEIFLYAQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGMVAPPSGL 240 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 241 YLTQVDY 247 >gi|302669997|ref|YP_003829957.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] gi|302394470|gb|ADL33375.1| tRNA pseudouridine synthase A TruA1 [Butyrivibrio proteoclasticus B316] Length = 262 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ Y GW Q + +I+G + +AI +TGE V V GA RTD+GVHA Sbjct: 5 RRIMLTVSYDGTAYNGWAEQTSTPNTIEGELNRAIERLTGEPVHVIGASRTDAGVHAYGN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD ALN L I I+N V FH R ++Y YRI Q Sbjct: 65 VAVFDTASSIPGDRFVFALNHEL--PQDIRIVNSREVATSFHPRHCDTEKTYEYRIFNSQ 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ LD M AA +LVG HDFT+F ++ QA S +RTI V Sbjct: 123 IMDPTKRFYTCHFSMPLDIGRMNAAAHYLVGEHDFTSFCNVESQALSHVRTIKDIRVTRN 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL+ +R G+L +G GK T +++ L + R GP AP EGL+ Sbjct: 183 GDEVVISVTGNGFLYNMVRIIAGTLMQIGRGKGTPAEVKDILDKKYRGAAGPTAPAEGLF 242 Query: 241 FDSVEY 246 VEY Sbjct: 243 L--VEY 246 >gi|251778715|ref|ZP_04821635.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083030|gb|EES48920.1| tRNA pseudouridine synthase A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 244 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D ISI+ VD +FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LA K + K L+ E+M+ A ++ VG+HDF F S A + +RTI F + Sbjct: 119 EKLAFGKQYLHHVRKELNVEDMKKACEYFVGKHDFKAFMSPGSSAKTTVRTITDFYIEEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I I + A FL+ +R VG+L VG GK D+ + RK G PP GL Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|125718790|ref|YP_001035923.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK36] gi|166229844|sp|A3CQB8|TRUA_STRSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125498707|gb|ABN45373.1| tRNA pseudouridine synthase A, putative [Streptococcus sanguinis SK36] Length = 249 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGRPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEDRDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPIEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|119475872|ref|ZP_01616224.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] gi|119450499|gb|EAW31733.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2143] Length = 288 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+GS Y GWQ Q +++Q ++EKA+ V V+V AGRTD+GVHA Q Sbjct: 27 RVALCVSYDGSAYHGWQSQRKPQVATVQETLEKALSSVANANVIVQCAGRTDTGVHASHQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + N L S I V +F+ARFSA R Y Y I+ R Sbjct: 87 IVHFDSPSARGEKAWVRGGNTNLPSSIAIQW--AKPVSAKFNARFSATARRYRYVILNRP 144 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A A+ LD +M AAQ LVG DFT++R+ CQ+ +P+R I DV+ Sbjct: 145 ARSAILSAGVTWQRYPLDEISMHEAAQALVGELDFTSYRAAACQSKTPMRNIHRVDVSRQ 204 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ I + A +FLH +R+ G L +G G + E+ L A+DR APP GLY Sbjct: 205 GDLVIIDIQANAFLHHMVRNIAGVLMAIGTGAKPTVWAEEVLLAKDRSVAAATAPPHGLY 264 Query: 241 FDSVEY 246 V Y Sbjct: 265 LIGVTY 270 >gi|190571328|ref|YP_001975686.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018724|ref|ZP_03334532.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238057739|sp|B3CMC1|TRUA_WOLPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190357600|emb|CAQ55041.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995675|gb|EEB56315.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 245 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGERVSLHCGGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF++ R++ + +N +LK + + ++ D FHARFSA +R Y YRII R Sbjct: 61 VAHFNMERQFELYRIRNGINYHLKAIPIVVLSAEAVDDA-FHARFSAKKRYYEYRIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+H+ ++FRS CQA++P+RTID D+ Sbjct: 120 APAALEIGYVWQVFNPLDVNIMREAARHLLGKHNLSSFRSKDCQATNPVRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + ++ L R G APP GLY Sbjct: 180 GSHIYIKISAISFLHNQVRIIVGTLVEFGKNRTNPQEMLNILSQCKRNAAGITAPPHGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|168184901|ref|ZP_02619565.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|237795344|ref|YP_002862896.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] gi|182672019|gb|EDT83980.1| tRNA pseudouridine synthase A [Clostridium botulinum Bf] gi|229263868|gb|ACQ54901.1| tRNA pseudouridine synthase A [Clostridium botulinum Ba4 str. 657] Length = 246 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|241895121|ref|ZP_04782417.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] gi|241871617|gb|EER75368.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313] Length = 249 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 M RY I Y+G+ +FGWQ Q N ++Q +E + + E + V G+GRTD+ VHA Sbjct: 1 MPRYKATIAYDGTDFFGWQVQPNKRTVQAEMELVVNKMAKNPAEHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHFDL + + K L+ L I I + V FHA+F+A ++Y YR Sbjct: 61 KGQVAHFDLPFDIPADAVRKGLSTML--PYDIGIKKVEKVSDDFHAQFNAHNKTYFYRFS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + ++ + L+ E M+ A VG HD+ +F + Q + +RT+ + Sbjct: 119 TSEYIDPFKRNYTGHWHRRLNPELMQQAIGDYVGEHDWLSFVASGYQQKTTVRTVYSAKM 178 Query: 178 NSFGNLIEIRVV--ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 EI FL+ QIR VG L +G+G D+++ + +DR++ AP Sbjct: 179 WVKPEEEEIWFEFSGNGFLYNQIRIMVGVLLEIGNGVRPVDDIKRLFEVKDRQQAQFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY V+Y Sbjct: 239 AQGLYLMDVKY 249 >gi|110636905|ref|YP_677113.1| tRNA pseudouridine synthase A [Cytophaga hutchinsonii ATCC 33406] gi|110279586|gb|ABG57772.1| pseudouridylate synthase I [Cytophaga hutchinsonii ATCC 33406] Length = 248 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N ++QG ++KA+ V G + + G+GRTD+GVHA Q+ Sbjct: 1 MRYFLDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D +E ++ + +N YL I I + +V HARF A+ R+Y+YRI + Sbjct: 61 VHLDSPKEIDAALIFR-INGYL--PKDICIKSARLVQDDAHARFDALSRAYVYRITLVKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + P +D M AA L+ DF +F +H ++ TI H G Sbjct: 118 PFEIGLAYYFYPPIEID--RMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ V A FL +R+ VG++ VG G+ + D + + A+DRK G APPE LY Sbjct: 176 DMLYFHVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYL 235 Query: 242 DSVEY 246 VEY Sbjct: 236 SEVEY 240 >gi|323350454|ref|ZP_08086117.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] gi|322123391|gb|EFX95069.1| tRNA pseudouridine synthase A [Streptococcus sanguinis VMC66] Length = 249 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFLGNGFLYKQIRNMVGTLLKIGNKRMPVEQVQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1] Length = 286 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q+ Sbjct: 20 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQI 79 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 80 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSQPMPADFHARFKACARRYRYVIYNDPI 137 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 138 RPAHLAEEVTWNHRPLDVERMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ T + L+ ++R+E G A P GLY Sbjct: 198 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVTWAREVLEGRNRREGGVTAHPYGLYL 257 Query: 242 DSVEY 246 VEY Sbjct: 258 VQVEY 262 >gi|315612755|ref|ZP_07887666.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] gi|315314865|gb|EFU62906.1| tRNA pseudouridine synthase A [Streptococcus sanguinis ATCC 49296] Length = 274 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 26 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 85 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 86 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 143 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 144 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEARLSV 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 204 DETGQFLTFSFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILKKKDRQLAGPTAAPN 263 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 264 GLYLKEIRY 272 >gi|255604972|ref|XP_002538318.1| pseudouridylate synthase, putative [Ricinus communis] gi|223512770|gb|EEF24066.1| pseudouridylate synthase, putative [Ricinus communis] Length = 283 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 138/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS + GWQ Q +G+++Q ++ A+ + G V V AGRTD+GVHAL QV Sbjct: 25 MRVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQV 84 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + +NA+L + +L S VD +FHARFSA RRSY Y + Sbjct: 85 AHFDTAVTRPQNAWVRGVNAFL--PTGVRVLWASEVDVEFHARFSAERRSYQYVLQVSPV 142 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ + LD + MR AA L+G HDF+ FR+ CQA +PI+ + D+ F Sbjct: 143 APAVLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFD 202 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+I A +FLH +R+ VGSL VG G+ + L+ +DR+ P P+GLY Sbjct: 203 NVILFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYL 262 Query: 242 DSVEY 246 V Y Sbjct: 263 TGVHY 267 >gi|312862611|ref|ZP_07722852.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] gi|311101871|gb|EFQ60073.1| tRNA pseudouridine synthase A [Streptococcus vestibularis F0396] Length = 249 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ +EK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEELEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR++ ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPLSLAPMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++ DR GP A Sbjct: 179 DEKTGFYIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESCDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|212694471|ref|ZP_03302599.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|265750782|ref|ZP_06086845.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] gi|212662972|gb|EEB23546.1| hypothetical protein BACDOR_03999 [Bacteroides dorei DSM 17855] gi|263237678|gb|EEZ23128.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_33FAA] Length = 257 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 1 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L I++ ++ V HARF A R+Y Y + Sbjct: 61 AHFDYDQELDCVQITEKLNRLL--PSDIAVYDVKRVKDDAHARFDATYRTYKYYV--TIR 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSF 180 + AW + SLD E M AA+ L DFT+F +H + R + Sbjct: 117 KDPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 177 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVDVGY 242 >gi|241759308|ref|ZP_04757414.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] gi|241320444|gb|EER56741.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114] Length = 270 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q + ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 1 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 61 QVVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 119 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRTSISG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 179 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 238 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 239 YLTGVDY 245 >gi|332982675|ref|YP_004464116.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] gi|332700353|gb|AEE97294.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON] Length = 245 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++Y+G+ Y GWQ QKN +IQ +E+AI +TG+ V AGRTD GVHAL QV Sbjct: 3 RNIKLTLQYDGTAYAGWQYQKNALTIQQVVEEAIESLTGQHSTVIAAGRTDRGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F ALNA L + I +++ V FHARF A + Y Y I Sbjct: 63 TNFKTESNIPTDRWLYALNAVL--PEDIRVIDAQDVLPSFHARFDAKGKLYRYIIWNAPY 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + + + LD + M+ AA + VG HDF++F++ +R I + + G Sbjct: 121 SSALLRNFSLHVARPLDADAMKRAALYFVGTHDFSSFQASGSTVRDTVRNIWDISIQTEG 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I + FL+ +R VG+L VG GK T+ D + L+A+DRK G A P GLY Sbjct: 181 KMISISISGDGFLYNMVRIMVGTLIDVGIGKITACDAKLILEARDRKRAGKTAGPHGLYL 240 Query: 242 DSVEY 246 V Y Sbjct: 241 VEVYY 245 >gi|225075428|ref|ZP_03718627.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] gi|224953246|gb|EEG34455.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens NRL30031/H210] Length = 281 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + + Y+GS ++GWQ+Q + ++Q ++E+A+ + GE + AGRTD+GVHA Sbjct: 12 MQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATA 71 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D +++L V FHARF A R Y Y + + Sbjct: 72 QVVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLVAQKVAPHFHARFDAYGRHYRYLLESS 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GR LD MR AA L G HDF++FR+ CQA SP++T+ ++ Sbjct: 130 PVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVKTLYSTKISG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + +FLH +R+ +G+L VG G+ + + E A+ R + P +GL Sbjct: 190 TSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGL 249 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 250 YLTGVDY 256 >gi|188590732|ref|YP_001919706.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] gi|238689635|sp|B2UYE4|TRUA_CLOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188501013|gb|ACD54149.1| tRNA pseudouridine synthase A [Clostridium botulinum E3 str. Alaska E43] Length = 244 Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +IIE++G+ + GWQRQ ++QG +E AI +TGE + +G+ RTD GVHA Sbjct: 1 MRNIKLIIEFDGTNFCGWQRQVKDRTVQGCLENAILKITGEKSLTNGSSRTDGGVHAKAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +ALN L D ISI+ VD +FHAR+S+ + Y Y I+ R Sbjct: 61 VANFITNSSIPGEKFREALNTKL--PDDISIIKSEEVDMEFHARYSSKGKMYSYTIVNRY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LA K + K L+ E+M+ A ++ +G+HDF F S A + +RTI F + Sbjct: 119 EKLAFGKQYLHHVRKELNVEDMKKACEYFLGKHDFKAFMSPGSSAKTTVRTITDFYIEEN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+I I + A FL+ +R VG+L VG GK D+ + RK G PP GL Sbjct: 179 KNVIRIFISADGFLYNMVRIIVGTLINVGTGKTKLQDVNNIINDGIRKNAGMCVPPNGLV 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LEKVFY 244 >gi|218508236|ref|ZP_03506114.1| tRNA pseudouridine synthase A [Rhizobium etli Brasil 5] Length = 238 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 147/238 (61%), Positives = 183/238 (76%), Gaps = 1/238 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G Y GWQRQ+NG S+QG+IE A+ +TGE V V GAGRTDSGVHA+ Q Sbjct: 1 MPRYRITVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL +EW P L ALNA+L+ + +SIL++ V + F ARFSA+RR YLYRI++R Sbjct: 61 VIHADLSKEWSPYQLQNALNAHLRLAGERVSILDVEAVPEFFDARFSALRRHYLYRIVSR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APLALE G+AW +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV Sbjct: 121 RAPLALEAGKAWWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LIEIR A+SFLH QIRSF G+LKL G+GKWT D+E AL+A+DRK CGP+APP+ Sbjct: 181 SGALIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPD 238 >gi|288904465|ref|YP_003429686.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|306830500|ref|ZP_07463669.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306832735|ref|ZP_07465871.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|325977479|ref|YP_004287195.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731190|emb|CBI12738.1| tRNA pseudouridylate synthase I [Streptococcus gallolyticus UCN34] gi|304425084|gb|EFM28214.1| tRNA pseudouridine synthase A [Streptococcus bovis ATCC 700338] gi|304427346|gb|EFM30449.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177407|emb|CBZ47451.1| tRNA pseudouridine synthase A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 249 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G + G+QRQ + S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKATISYDGRLFAGFQRQPSERSVQEELEKTLQKLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++ + V +FHAR++ ++Y + + Sbjct: 61 QVVHFDLPQARDVEKLRFGLDT--QSPEDIDVVKVEQVSDEFHARYNKHSKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD +M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRHYATHYPYPLDLTSMQEAIKDLVGTHDFTGFTASGTSVENKVRTITRATVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L++++R GP A Sbjct: 179 DDKTGFFVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTVLESKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEINY 247 >gi|262198313|ref|YP_003269522.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] gi|262081660|gb|ACY17629.1| tRNA pseudouridine synthase A [Haliangium ochraceum DSM 14365] Length = 264 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 125/244 (51%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++EY+G+G GWQRQ N ++Q +E A+ + G V + GA RTD+GVHAL QVAH Sbjct: 7 IRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQVAH 66 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P + LN L I+++ + V FHARF + + Y Y + TR A Sbjct: 67 FRTGSSIPPHGFLRGLNGKL--PPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARA 124 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGN 182 L + RAW P+ LD M AAQ ++G DF FR+ C A + R +D + Sbjct: 125 PLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAAD 184 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 LI I V +FL +R G+L VG G+ + ++ L ++DR G AP GL Sbjct: 185 LIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244 Query: 243 SVEY 246 V Y Sbjct: 245 EVFY 248 >gi|110679351|ref|YP_682358.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] gi|122972811|sp|Q168C1|TRUA_ROSDO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109455467|gb|ABG31672.1| tRNA pseudouridine synthase A [Roseobacter denitrificans OCh 114] Length = 260 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 122/250 (48%), Positives = 162/250 (64%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EYNG+ + GWQRQK +IQG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYNGAPFVGWQRQKEHPTIQGAIERALGKIAPGPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALN +LK + ++ D ++HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLERDWDPFRLSEALNYHLKPAPIAITACTAV-DAEWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 AP +KG W + + LD MR AA L+G+HDFTTFRS CQA SP++T+D DVN Sbjct: 120 APATHQKGLVWQVKQKLDVTAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVNEV 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 DTPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVVY 249 >gi|90021726|ref|YP_527553.1| pseudouridylate synthase [Saccharophagus degradans 2-40] gi|89951326|gb|ABD81341.1| tRNA pseudouridine synthase A [Saccharophagus degradans 2-40] Length = 289 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 140/252 (55%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY+GS Y G+QRQ ++Q +EKA+ V E V + AGRTD+GVHA Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + +N +L +I +++ V FHARFSA+ R+Y Y I Sbjct: 82 QIVHFDTLAGRPSKAWLQGVNTHL--PFSIRVISAKEVGFDFHARFSALSRTYRYVIHVS 139 Query: 120 QAPLALEKGRAWLIPKSL-----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 Q A + D M+ AA L+G HDFT+FR++HCQA+SP+RT++ Sbjct: 140 QVRSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEV 199 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 DV G I ++V A +FLH +R+ VG L VG G+ + + + ++ +DR + A Sbjct: 200 ADVVQMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETA 259 Query: 235 PPEGLYFDSVEY 246 P GLYF +V+Y Sbjct: 260 PAAGLYFVNVQY 271 >gi|254560755|ref|YP_003067850.1| tRNA pseudouridine synthase A [Methylobacterium extorquens DM4] gi|254268033|emb|CAX23904.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens DM4] Length = 250 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 109/251 (43%), Positives = 156/251 (62%), Gaps = 5/251 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ D Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCNRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEYS 247 GL F V+Y+ Sbjct: 240 CGLTFVGVDYA 250 >gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341] Length = 265 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRIALLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V KALNA I I I+ + V + FH R+++ +++Y Y++ + Sbjct: 61 LHFDTDLNIPDVAWVKALNA--TIPKDIRIVGATTVSEDFHVRYNSTQKTYYYKLYIGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---N 178 + E + + ++ +G HDF++F S + +RTI + Sbjct: 119 IDPFLLNYVGKHSFDFNFEKAQESLKYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMGKDP 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N++ + FL+ +R +G+++ V GK+ + +++ L ++R+ GP A G Sbjct: 179 INPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEADYIKEILDKKERQFAGPKADAAG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLKEVVY 246 >gi|170703047|ref|ZP_02893873.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] gi|170132039|gb|EDT00541.1| tRNA pseudouridine synthase A [Burkholderia ambifaria IOP40-10] Length = 270 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DRK P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRKLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|172062883|ref|YP_001810534.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] gi|238692865|sp|B1Z1N7|TRUA_BURA4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171995400|gb|ACB66318.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MC40-6] Length = 270 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|84515131|ref|ZP_01002494.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] gi|84511290|gb|EAQ07744.1| tRNA pseudouridine synthase A [Loktanella vestfoldensis SKA53] Length = 257 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQRQ S+QG+IE A+ ++ + AGRTD+GVHA Q Sbjct: 1 MPRYALLVEYHGAPFAGWQRQTGLPSVQGAIEAALAKLSPGPHTIAAAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL +W P L +ALN +LK D ++IL ++V +HARF A+ R YL+R+I R+ Sbjct: 61 VAHCDLPGDWDPFRLSEALNYHLK-PDPVAILGCALVADDWHARFDAVERQYLFRVIARR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G+ W + LD M+ A HL+G HDFTTFRS CQA SP++T+D + Sbjct: 120 APLTSEAGQMWRVNHDLDAAAMQAGADHLLGLHDFTTFRSSICQAKSPVKTLDELRIEVV 179 Query: 181 GN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ARSFLH Q+RSFVG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 QRAIGTEYRFHVRARSFLHNQVRSFVGTLERVGAGAWQPGDVARALTARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLAGVRY 249 >gi|77406326|ref|ZP_00783390.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] gi|77175064|gb|EAO77869.1| tRNA pseudouridine synthase A [Streptococcus agalactiae H36B] Length = 258 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY I Y+GS + G+QRQ N ++Q IE+ + + +G V++HGAGRTD+GVHA Sbjct: 1 MTRYKAQISYDGSAFSGFQRQPNCRTVQEEIERTLKRLNSGNDVIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + D I I+ + V FH R+ ++Y + Sbjct: 61 QVIHFDLPQARDVEKLRFGLDT--QCPDDIDIVKVEQVSDDFHCRYDKHIKTYEILVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P + E M+ A + LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYATHYPYPVIIELMKEAIKDLVGTHDFTGFTASGTSVENKVRTIFDAKIQF 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 NL+ FL+ Q+R+ VG+L +G+G+ + ++ LQA++R GP A Sbjct: 179 EASKNLLIFTFTGNGFLYKQVRNMVGTLLKIGNGRMPISQIKTILQAKNRDLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|310829551|ref|YP_003961908.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] gi|308741285|gb|ADO38945.1| hypothetical protein ELI_4001 [Eubacterium limosum KIST612] Length = 244 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M MII Y G+ Y GWQRQ N +++ ++ AI VTGE V ++G+GRTD+GVHAL Q Sbjct: 1 MKNIQMIIAYKGTRYAGWQRQPNAPTVEEALTGAIKAVTGETVTLYGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF P ALN L I +L+ + FH+R+SA + Y Y++ Sbjct: 61 SAHFHTESRVPPERFAAALNTRL--PGDIRVLSSCEAPEGFHSRYSAKGKVYTYQLYLNP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + +D M+ A+ +G HDF F + +RTI Sbjct: 119 VLSPFYAEYSWHVNYPVDVSRMKAASAAFLGEHDFCGFMAAGSSVRGTVRTIRAITFEQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ I FL+ +R G+L +G G+ + L + + DRK+ G APP+GL+ Sbjct: 179 GALLRITYTGNGFLYNMVRIMTGTLAEIGMGRIKAEALPGIIASCDRKQAGMTAPPQGLF 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LREVLY 244 >gi|114798579|ref|YP_759245.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] gi|123028359|sp|Q0C4U8|TRUA_HYPNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114738753|gb|ABI76878.1| tRNA pseudouridine synthase A [Hyphomonas neptunium ATCC 15444] Length = 247 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 112/246 (45%), Positives = 150/246 (60%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEYNG Y GW R ++QG++E A + G V V GAGRTD+GVHA Q Sbjct: 1 MPRYRLLIEYNGGPYQGWMRLPGLQTVQGALEAAAAQLDGGPVEVTGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + + A+N +L+ I++L V++ FHARFSAI R Y Y +I R+ Sbjct: 61 VAHMDLRVDRPNKVA-DAMNYHLR-PHPIAVLKADRVEEDFHARFSAIARHYRYIVINRR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L ++G AW +P LD + M AAQ VG HDFTTFR CQA SP++T+ DV + Sbjct: 119 AHLTHDQGLAWRVPSRLDADKMHEAAQSFVGTHDFTTFRDSECQALSPVKTLTRLDVARY 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + IE A SF+H Q+RS VGSL VG G+ + L+A DR CGP+AP +GL+ Sbjct: 179 NDRIEFTCSAPSFIHRQVRSLVGSLVEVGRGRHPVKWAREILEAADRTRCGPVAPSDGLF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LERVDY 244 >gi|241663409|ref|YP_002981769.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|309783472|ref|ZP_07678175.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] gi|240865436|gb|ACS63097.1| tRNA pseudouridine synthase A [Ralstonia pickettii 12D] gi|308917758|gb|EFP63452.1| tRNA pseudouridine synthase A [Ralstonia sp. 5_7_47FAA] Length = 274 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I+Y+G+ + GWQ Q +G+++Q +E A+ G + AGRTD+GVHAL Q Sbjct: 1 MTRIALGIQYDGAAFSGWQSQPHGNTVQDVLESALRQFAGVALPTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + NA+L T+++ + + FHARFSA RR+Y Y + Sbjct: 61 VVHLDTDLVREPFSWVRGTNAFL--PPTVAVRWAQEMPEGFHARFSAHRRTYYYALTFGP 118 Query: 121 APLALEKGRAWLIPKSL----DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + +A + D E M AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 119 TRAPLLEDKAGYVMLPPGQSLDVEAMNEAAQVLVGEHDFSSFRAAECQAKSPVKTMYSVE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G + +R+ +FLH +R+ +G L +G G+ + + L A+ R P P Sbjct: 179 VRGEGEWVFVRIRGSAFLHHMVRNIMGCLVAIGRGRQPVSWMGDVLAARSRVAAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 239 DGLYLAEVGY 248 >gi|221196945|ref|ZP_03569992.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] gi|221203615|ref|ZP_03576634.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221177549|gb|EEE09977.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2] gi|221183499|gb|EEE15899.1| tRNA pseudouridine synthase A [Burkholderia multivorans CGD2M] Length = 270 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G+++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGNTVQDALERALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + FHARFSA R+Y Y + Sbjct: 61 VHFDTELDRADFSWVRGTNAFL--PPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G Sbjct: 119 RSPMLDGRAGWIHTPLDDDAMRAAAAHLLGEHDFSAFRSSECQSKTPVKHVYEIDIRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + + L DR P +GLY Sbjct: 179 HFLHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWVADVLAGCDRNRAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|148653728|ref|YP_001280821.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] gi|148572812|gb|ABQ94871.1| tRNA pseudouridine synthase A [Psychrobacter sp. PRwf-1] Length = 302 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + +E+NG+ Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 39 YALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 98 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + + N+ L D I+I + + FHARF AI R Y Y + + Sbjct: 99 FTTSAKRGVYNWLRGANSLL--PDDIAIRWIQPMPDTFHARFGAIARRYRYITLNQPQRP 156 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ I + LD M+ AA+H+VG HDF++FR+ CQ+ P+R I H + G Sbjct: 157 AVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHAKLFKHGEF 216 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G G+ D + LQA+DR P APP+GLYF + Sbjct: 217 IVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAPPDGLYFIN 276 Query: 244 VEY 246 Y Sbjct: 277 AYY 279 >gi|260914049|ref|ZP_05920522.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] gi|260631682|gb|EEX49860.1| tRNA pseudouridine synthase A [Pasteurella dagmatis ATCC 43325] Length = 264 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I+YNG YFGWQRQ+ +S+Q +EKAI V E + AGRTDSGVHA QV Sbjct: 1 MKVALGIQYNGKNYFGWQRQERVASVQEELEKAISFVANEHCQIFCAGRTDSGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D IS+ IVD+ FHARFSA R Y Y + + Sbjct: 61 IHFETNANRPEKAWSFGVNANL--PDDISVSWAKIVDEDFHARFSANARRYRYILYCNKL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M A Q L+G +DF++FR+ CQ+ +P R + H +V G Sbjct: 119 RSAILPKGITHCHLELDHQLMHQAGQVLLGENDFSSFRASQCQSHTPFRNVHHLNVIRRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G + L +DR P A PEGLY Sbjct: 179 QYIIVDIQANAFVHHMVRNIVGSLIEIGAGHQPVEWMSWLLAQKDRTLAAPTAKPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VNVIY 243 >gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896] Length = 244 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y G+ Y GWQ+Q NG SIQ IE+AI VTG+ V + G+GRTDSGVHAL QV Sbjct: 3 QNILLKIQYIGTNYCGWQKQNNGKSIQQEIERAICEVTGKQVNLTGSGRTDSGVHALGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + A+N YL D I I+ V+ FHAR+S+ +++Y YRI + Sbjct: 63 ANFVIDTTIPVEKIKYAINYYL--PDDIRIIESKAVEDSFHARYSSKKKTYCYRINMNEI 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 EK R++ + K LD M+ ++ L+G HDF F+S + +RTI ++N Sbjct: 121 ESPFEKNRSYFVGKELDLSKMKEQSKFLMGEHDFAAFQSEGSSVKTTVRTIYSLEINCIN 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ EI ++ FL+ +R G+L +G GK + L + R+ GP AP GL+ Sbjct: 181 NIAEIHIIGNGFLYNMVRIIAGTLIEIGKGK--DYSIVDILNTKQRENAGPTAPACGLFM 238 Query: 242 DSVEY 246 + VEY Sbjct: 239 EKVEY 243 >gi|329957112|ref|ZP_08297679.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] gi|328523380|gb|EGF50479.1| tRNA pseudouridine synthase A [Bacteroides clarus YIT 12056] Length = 251 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R+Y Y + T Sbjct: 61 VAHFDSEVPLDVTFMADKLNRLL--PPDISVYRLRAVRPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 A + ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 117 AKMPFDRRYRCRLFQTPDFERMNEAAQTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIEGFRRVIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLVDIAY 243 >gi|56551706|ref|YP_162545.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241762299|ref|ZP_04760380.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752717|ref|YP_003225610.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59803041|sp|Q9REQ0|TRUA_ZYMMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56543280|gb|AAV89434.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ZM4] gi|241373202|gb|EER62832.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552080|gb|ACV75026.1| tRNA pseudouridine synthase A [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 245 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 133/246 (54%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQRQK+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRQKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|282852680|ref|ZP_06262022.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] gi|282556422|gb|EFB62042.1| tRNA pseudouridine synthase A [Lactobacillus gasseri 224-1] Length = 258 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 127/251 (50%), Gaps = 8/251 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q N ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA Sbjct: 1 MMTTRYKLTMAYDGHLFHGFQIQPNERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHA 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HFD +E + ALNA + + IVD FH ++S + Y Y + Sbjct: 61 KGQVIHFDYPGKEIPAKNMMLALNAL--MPIDTVFFDSEIVDSDFHVQYSTKGKWYRYIV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-- 174 + + P LD M+ AA+ L+G HDFT+F + Q +RTI + Sbjct: 119 DQHRFTDPFNRFYTGHYPYPLDIALMKKAAKDLIGEHDFTSFAASGGQIVDKVRTIYYVN 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + I + FL+ +R VG+L +G+ K D+ + L A+DR+E A Sbjct: 179 ITSDPDNKKIIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTA 238 Query: 235 PPEGLYFDSVE 245 P GLY V Sbjct: 239 PASGLYLQHVF 249 >gi|77458123|ref|YP_347628.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf0-1] gi|77382126|gb|ABA73639.1| pseudouridylate synthase I [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ ++Q ++EKA+ V + + AGRTD+GVHA Q Sbjct: 7 FRVALGVEYKGSRYSGWQRQSTGVLTVQETLEKALSKVADSPISLQCAGRTDAGVHACGQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + N L IS+ I+ FHARF AI R Y Y I Q Sbjct: 67 VVHFDTQVDRSLKAWVMGANINL--PHDISVSWAKIMPAHFHARFKAIARRYRYVIYNDQ 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E M AAQ+L+G HDF+ FR+ CQA SPI+ + H V Sbjct: 125 IRPAHLNEEITWNHRPLDVERMAEAAQYLIGTHDFSAFRAGQCQAKSPIKQMHHLRVTRH 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + + A +FLH +R+ G L +G G+ +++ L++++R+ G A P GLY Sbjct: 185 GKMIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWMKEVLESRERRSGGVTAHPFGLY 244 Query: 241 FDSVEY 246 VEY Sbjct: 245 LVQVEY 250 >gi|296446982|ref|ZP_06888917.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] gi|296255549|gb|EFH02641.1| tRNA pseudouridine synthase A [Methylosinus trichosporium OB3b] Length = 246 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 131/247 (53%), Positives = 169/247 (68%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R+ +IIEY+G + GWQRQ+NG SIQ +E+A+ + +G VVHGAGRTD+GVHAL Sbjct: 1 MPRFALIIEYDGGPFVGWQRQENGVSIQQRLEEAVAALESGARRVVHGAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL R+W L A+NA+L+ + + + F ARFSA+RR Y Y I R Sbjct: 61 QVAHVDLTRDWRADRLRDAINAHLRPDPIAVLEARGVAE-GFEARFSAVRRHYRYIIDNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL L++GR W + + LD M AAQ LVGRHDFTTFRS CQA SPIRT++ DV Sbjct: 120 RAPLTLQRGRMWHVKRPLDAAAMHAAAQLLVGRHDFTTFRSTECQAESPIRTLERLDVRR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIEI ARSFLH Q+RS GSL+ VG G+W++ DL AL+A++R CG +APP GL Sbjct: 180 EGSLIEITTSARSFLHNQVRSLAGSLEHVGSGRWSAADLRAALEARERARCGQVAPPHGL 239 Query: 240 YFDSVEY 246 Y +V+Y Sbjct: 240 YLVAVDY 246 >gi|116749101|ref|YP_845788.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] gi|116698165|gb|ABK17353.1| tRNA pseudouridine synthase A [Syntrophobacter fumaroxidans MPOB] Length = 261 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +I+EY+GS Y GWQRQ +IQ +E + ++ V V +GRTD+GVHA QV Sbjct: 10 KNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTDAGVHACGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + P + + +N+ L I +L+ + + FHARFSA ++Y Y I+ R Sbjct: 70 VNFHVHTRLRPEEILRGINSLL--PPDIVVLHAEVAAESFHARFSATGKTYEYHILNRPI 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSF 180 AL++ AW +P+ L+ + MR L+GRHDF F + + S RTI D Sbjct: 128 RSALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRRADLDCLE 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG++ VG G + L ++DRK G AP GL+ Sbjct: 188 NGEMRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGMTAPAHGLF 247 Query: 241 FDSVEYS 247 +V Y+ Sbjct: 248 LTAVHYT 254 >gi|224477189|ref|YP_002634795.1| tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] gi|254764865|sp|B9DM46|TRUA_STACT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222421796|emb|CAL28610.1| putative tRNA pseudouridine synthase A [Staphylococcus carnosus subsp. carnosus TM300] Length = 267 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G ++Q EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + +SIVD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIAPDKWQYAMNSAL--PDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G SLD E M AAQ +G HDFT F S + S RT+ ++ Sbjct: 119 RDVFMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + V FL+ +R V L VG GK ++ L+A+DRK+ AP EGLY Sbjct: 179 NGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEEVPILLEAKDRKQVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|218245114|ref|YP_002370485.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] gi|226708647|sp|B7K222|TRUA_CYAP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218165592|gb|ACK64329.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8801] Length = 293 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+V LNA L + I I + V +HARFSA R Y Y T Q Sbjct: 70 AHFDMVSPIPASRWVDILNARL--PEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQR 127 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W D M+ A L+GRH F + + + Sbjct: 128 PNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQ 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 188 GPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLC 247 Query: 241 FDSVEY 246 V Y Sbjct: 248 LLRVGY 253 >gi|251788988|ref|YP_003003709.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] gi|247537609|gb|ACT06230.1| tRNA pseudouridine synthase A [Dickeya zeae Ech1591] Length = 276 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVDSVQGCLEAALSQVANARIDVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + VD+ FHARFSA R Y Y I R+ Sbjct: 74 HFTTHAVRKDAAWTMGVNANL--PPDIAVRWVKTVDEAFHARFSATARRYRYVIYNRRFR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M A Q L+G +DFT+FR++ CQ+ +P R + H V G+ Sbjct: 132 PAILSQGVTHYYLPLDAERMHRAGQCLLGENDFTSFRAVQCQSRTPWRNLMHLRVTRLGD 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L A+DR A +GLY Sbjct: 192 YVVVDIKANAFVHHMVRNIVGSLMEIGCGNQPENWMAELLAAKDRTLAAATAKADGLYLV 251 Query: 243 SVEY 246 +V+Y Sbjct: 252 AVDY 255 >gi|117925388|ref|YP_866005.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] gi|117609144|gb|ABK44599.1| tRNA pseudouridine synthase A [Magnetococcus sp. MC-1] Length = 270 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 145/245 (59%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +E++GS + GWQ Q+N S+Q ++E+A+ + E + VHG+GRTD+GVHA QV Sbjct: 13 QRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVHATGQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + LN ++ +I++L V + FHAR+ A R YLYRI TR+ Sbjct: 73 AHFDAPAHRDAATYLRILN--VRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKI 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ALE+ R W P LD E + A+ L+G HDF++FR+ CQ+ SP++ + G Sbjct: 131 PPALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ + A +FL +R+ VG+L LVG G W + + L A+DR + GP AP GLY Sbjct: 191 DEWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWGLYL 250 Query: 242 DSVEY 246 + Y Sbjct: 251 THICY 255 >gi|269958752|ref|YP_003328539.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] gi|269848581|gb|ACZ49225.1| tRNA pseudouridine synthase A [Anaplasma centrale str. Israel] Length = 247 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 108/248 (43%), Positives = 152/248 (61%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY+G+ + GWQRQK G S+Q SIE AI+ ++ + V V AGRTD+GVHAL Sbjct: 1 MRYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQYVTVFAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ + +L + FHARFSA +R Y+Y+I+ R Sbjct: 61 QVVHFDLNTSLQDYVIKNALNHYLRSDMVSIL-SLEEAAEGFHARFSAKKRHYMYKIVNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVN 178 AP L++ R W +PK L +M+ AA H+VG DF +FR+ CQ+ S +RT+D D Sbjct: 120 DAPPCLDRLRMWHVPKQLSVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCV 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 GN I + V A+SFLH Q+R VG+L G G + + + + L+ ++R G APP G Sbjct: 180 REGNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHG 239 Query: 239 LYFDSVEY 246 LY VEY Sbjct: 240 LYLVLVEY 247 >gi|255536203|ref|YP_003096574.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] gi|255342399|gb|ACU08512.1| tRNA pseudouridine synthase A [Flavobacteriaceae bacterium 3519-10] Length = 245 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G YFG+Q Q +IQ +EKA+ + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFSYHGKNYFGYQIQPREITIQQELEKALSTLLRAEIKTTGAGRTDTGVHAKKMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + LN++L I++ + V HARF A R+Y Y I + Sbjct: 61 AHFDTEIAVEDNLPYR-LNSFL--PQDIAVSRIFKVKDDLHARFDATFRTYEYYISLAKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + + + ++L+ M A + L DFT+F +H + I G Sbjct: 118 PFSQD-FSWQIRNRTLEIGKMNEACRILFEYEDFTSFSKLHTDNKTNNCKIYKAFWEQNG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N ++ V A FL +R+ VG++ +G+GK DL K ++A+DR G AP +GL+ Sbjct: 177 NELKFTVSADRFLRNMVRAIVGTMVEIGNGKIQPMDLRKIIEAKDRSFAGTSAPAQGLFL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 VDVGY 241 >gi|168483521|ref|ZP_02708473.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] gi|172043050|gb|EDT51096.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC1873-00] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYVFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E MR A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEICY 247 >gi|15903494|ref|NP_359044.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116516785|ref|YP_816881.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|148988650|ref|ZP_01820083.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|149004327|ref|ZP_01829087.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|169833383|ref|YP_001694996.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182684548|ref|YP_001836295.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|221232354|ref|YP_002511507.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225855038|ref|YP_002736550.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|237649225|ref|ZP_04523477.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974] gi|237822076|ref|ZP_04597921.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CCRI 1974M2] gi|307127806|ref|YP_003879837.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|38258775|sp|Q8CWQ1|TRUA_STRR6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122278273|sp|Q04JF7|TRUA_STRP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688376|sp|B1ID11|TRUA_STRPI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691180|sp|B2IRB1|TRUA_STRPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764868|sp|B8ZM12|TRUA_STRPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254764870|sp|C1CFH9|TRUA_STRZJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|15459107|gb|AAL00255.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae R6] gi|116077361|gb|ABJ55081.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae D39] gi|147757704|gb|EDK64720.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP14-BS69] gi|147925851|gb|EDK76926.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73] gi|168995885|gb|ACA36497.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae Hungary19A-6] gi|182629882|gb|ACB90830.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CGSP14] gi|220674815|emb|CAR69389.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae ATCC 700669] gi|225723432|gb|ACO19285.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae JJA] gi|306484868|gb|ADM91737.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae 670-6B] gi|332072765|gb|EGI83246.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA17545] gi|332200155|gb|EGJ14228.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA47368] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|307705317|ref|ZP_07642179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] gi|307621104|gb|EFO00179.1| tRNA pseudouridine synthase A [Streptococcus mitis SK597] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M++A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTNVEDKIRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIDLILEKKDRQLAGPTAASN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|218529891|ref|YP_002420707.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] gi|254789640|sp|B7KVW3|TRUA_METC4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218522194|gb|ACK82779.1| tRNA pseudouridine synthase A [Methylobacterium chloromethanicum CM4] Length = 250 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 110/250 (44%), Positives = 155/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ +SIL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVSILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ D Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|56460125|ref|YP_155406.1| tRNA pseudouridine synthase A [Idiomarina loihiensis L2TR] gi|62901213|sp|Q5QUE5|TRUA_IDILO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56179135|gb|AAV81857.1| Pseudouridylate synthase (tRNA psi55) [Idiomarina loihiensis L2TR] Length = 261 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+GS Y+GWQRQ+ +S+Q +E+A+ + V V AGRTD+GVHA Q+ Sbjct: 1 MRMALCLEYDGSRYYGWQRQREVASVQQCVEEALSKIANAPVEVTCAGRTDAGVHATAQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ V +N+ L I++ VD +F ARFSA R Y Y I + Sbjct: 61 VHFDVPVPRADVAWTLGVNSNL--PAGIAVRWAREVDSEFSARFSATSRRYRYIIANTRF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M+ AAQ LVG HDFT FR+ HCQ+ +P R + V G Sbjct: 119 RPGIHSAGVSHYHQPLDAEVMQEAAQALVGEHDFTAFRASHCQSHTPFRKVSDLTVERRG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FLH +R+ VGSL +VG + + L+ +DR + A P GLY Sbjct: 179 DYIIVDISANAFLHHMVRNIVGSLIVVGQHLQPPDWIGELLRQKDRTKAAATAKPGGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 VAVTY 243 >gi|296284450|ref|ZP_06862448.1| tRNA pseudouridine synthase A [Citromicrobium bathyomarinum JL354] Length = 258 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 121/245 (49%), Positives = 165/245 (67%), Gaps = 1/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +E++G+ +FG QRQK+G S+Q ++E+A VTG+ V +H AGRTD+GVHA+ Sbjct: 4 TRYALTLEFDGTPFFGLQRQKDGPSVQQAVEEAAQAVTGQQVTLHSAGRTDTGVHAIAMR 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +HFD+ + P + +A+NA+L+ + ++ + +HARFS I R YLYRII R+A Sbjct: 64 SHFDVESKLTPFRMGEAINAHLRPAPIAVTHCEAV-PEDWHARFSCIGRRYLYRIINRRA 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 PL LEK RAWL+ D E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV G Sbjct: 123 PLTLEKNRAWLVSPECDAEAMHRAAQSLVGHHDFTTFRSVHCQAASPVKTLDRLDVERAG 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + V ARSFLH Q+RS VG L LVG G+W + + L+A+DR+E G AP GLYF Sbjct: 183 DEIRVHVAARSFLHHQVRSMVGCLALVGMGRWNEGRIAQVLEAKDRQELGLNAPSHGLYF 242 Query: 242 DSVEY 246 Y Sbjct: 243 VEAVY 247 >gi|148997657|ref|ZP_01825221.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|168575203|ref|ZP_02721166.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194397044|ref|YP_002038227.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|307068239|ref|YP_003877205.1| pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|238690845|sp|B5E6N8|TRUA_STRP4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147756156|gb|EDK63198.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP11-BS70] gi|183578806|gb|EDT99334.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae MLV-016] gi|194356711|gb|ACF55159.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae G54] gi|306409776|gb|ADM85203.1| Pseudouridylate synthase [Streptococcus pneumoniae AP200] gi|332199640|gb|EGJ13715.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae GA41317] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFILDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1] Length = 246 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+GY G+Q QKN ++Q +E+AI V G+ V + +GRTD+GVHA Q Sbjct: 1 MPNIKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F P + ALNA L I I IV FHARF A+ ++Y Y I Sbjct: 61 VINFFAQTGIPPQRIPHALNAVL--PRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + A+ + LD M+ AA L G+HDFT+F + + +R + DV Sbjct: 119 HPQVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEIN 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I A FL+ +R G+L VG GK +L + A++R G P GL Sbjct: 179 WPYITITAAADGFLYNMVRIIAGTLIEVGRGKRD-HNLGPVIDAKNRHRAGWTVPAHGLV 237 Query: 241 FDSVEYS 247 VEY+ Sbjct: 238 LREVEYN 244 >gi|170017912|ref|YP_001728831.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] gi|238688937|sp|B1MVY3|TRUA_LEUCK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169804769|gb|ACA83387.1| tRNA pseudouridine synthase A [Leuconostoc citreum KM20] Length = 260 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 86/256 (33%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIV---VVHGAGRTD 52 M RY I+ Y+GS +FG+Q Q ++QG + KA+ + + V V GA RTD Sbjct: 1 MTRYKAIVAYDGSNFFGFQVQTKSGVEVQRTVQGELNKAVNQMAKQPVTPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + PV + K LN L I I ++ V FHARFS + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINPVGVSKGLNTLL--PRDILIKAVTKVSDDFHARFSTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T ++ LD ++ A L+G HDF +F + Q +S +RTI Sbjct: 119 FYRVSTTAFTDPFKRHYTGHFHWHLDTSRIQEALPDLIGEHDFASFAASGNQTASTVRTI 178 Query: 173 DHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + + E +FL+ QIR VG L +G+G+ D+++ + +DR++ Sbjct: 179 TSAQLIEKPDEQELVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GLY D ++Y Sbjct: 239 RFTAPASGLYLDEIDY 254 >gi|198276843|ref|ZP_03209374.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] gi|198270368|gb|EDY94638.1| hypothetical protein BACPLE_03048 [Bacteroides plebeius DSM 17135] Length = 252 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NGSS+Q ++ KA+ E + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGTNYHGWQIQPNGSSVQETLMKALHTFLRDEAIEVVGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ + LN L IS+ + V++ HARF A R+Y Y + T+ Sbjct: 61 MVAHFDVEWMLDEDTVTDKLNRLL--PPDISVYRVRRVNQDAHARFDATYRTYKYYVTTQ 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + W + + LD M AAQ L DFT+F +H + I H + Sbjct: 119 KNP--FNRAYCWRLFQPLDFTKMNEAAQILFDYTDFTSFSKLHTDVKTNNCKIMHAHWDQ 176 Query: 180 F-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + A FL +R+ VG+L VG GK + K ++ ++R G P Sbjct: 177 VSETEWVFTIQADRFLRNMVRAIVGTLVEVGRGKLSVEGFRKVIEEKNRCSAGTSVPGHA 236 Query: 239 LYFDSVEY 246 L+ + Y Sbjct: 237 LFLVDIGY 244 >gi|222152501|ref|YP_002561676.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] gi|254764869|sp|B9DTJ0|TRUA_STRU0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|222113312|emb|CAR40884.1| tRNA pseudouridine synthase A [Streptococcus uberis 0140J] Length = 250 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GS + G+QRQ + S+Q IEK + +T G+ + VHGAGRTDSGVHA Sbjct: 1 MTRYKAIISYDGSQFQGFQRQSHARSVQEEIEKTLTKLTNGKEIKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLDQDRDLEKLRFALDT--QSPEDIDFISVEKVSDDFHSRYTKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD +N+++A + L+G HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYATHFPYPLDLDNIQLAIKDLIGTHDFTGFTASGATIENKVRTIIDASVRY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ Q+R+ VG+L +G+ + ++ L+ +DR+ GP Sbjct: 179 EEDKNFLIFTFTGNGFLYKQVRNMVGTLLKIGNNRMPVDQIKTILEKKDRQLAGPTPAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|315169224|gb|EFU13241.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1341] gi|315171531|gb|EFU15548.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1342] Length = 277 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKNKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|107026755|ref|YP_624266.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116692053|ref|YP_837586.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|170735954|ref|YP_001777214.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] gi|123370548|sp|Q1BM62|TRUA_BURCA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123464580|sp|A0AZ67|TRUA_BURCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688629|sp|B1K370|TRUA_BURCC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|105896129|gb|ABF79293.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia AU 1054] gi|116650053|gb|ABK10693.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia HI2424] gi|169818142|gb|ACA92724.1| tRNA pseudouridine synthase A [Burkholderia cenocepacia MC0-3] Length = 270 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E + NA+L T+S+ + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLEREVFSWVRGTNAFL--PSTVSVQWAKPMPDTFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|78062974|ref|YP_372882.1| tRNA pseudouridine synthase A [Burkholderia sp. 383] gi|123728751|sp|Q393X8|TRUA_BURS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|77970859|gb|ABB12238.1| Pseudouridylate synthase [Burkholderia sp. 383] Length = 270 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q +E A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDRLEHALAEFARVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+++ + + FHARFSA R+Y Y + Sbjct: 61 VHFDTDLDREVFSWVRGTNAFL--PSTVAVQWAKPMPETFHARFSAFERTYYYALYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFVHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|55820220|ref|YP_138662.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMG 18311] gi|55822111|ref|YP_140552.1| tRNA pseudouridine synthase A [Streptococcus thermophilus CNRZ1066] gi|62901189|sp|Q5M1T6|TRUA_STRT1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901193|sp|Q5M6C9|TRUA_STRT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55736205|gb|AAV59847.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus LMG 18311] gi|55738096|gb|AAV61737.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Streptococcus thermophilus CNRZ1066] Length = 248 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 132/249 (53%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + ++ L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQVKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|114331148|ref|YP_747370.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] gi|122313976|sp|Q0AGX7|TRUA_NITEC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|114308162|gb|ABI59405.1| tRNA pseudouridine synthase A [Nitrosomonas eutropha C91] Length = 277 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I+EY+G GY GWQ+Q + S+Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MKIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA L D IS+L S V+ FHARFSA R+YLY +++R A Sbjct: 61 VHFETHVIRPLTAWVRGANALL--PDDISVLWASEVNDDFHARFSATERTYLYYLLSRPA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +G+ SLD E M+ AA+ L+G HDF+ FRS CQA + IR + D++ Sbjct: 119 RPGIFQGKTGWTHYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLDISQSE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH +R+ +G+L +G GK+ ++ L +DR P P+GLY Sbjct: 179 QFFVFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AGVRY 243 >gi|237711190|ref|ZP_04541671.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] gi|237727555|ref|ZP_04558036.1| tRNA pseudouridine synthase A [Bacteroides sp. D4] gi|229434411|gb|EEO44488.1| tRNA pseudouridine synthase A [Bacteroides dorei 5_1_36/D4] gi|229455034|gb|EEO60755.1| tRNA pseudouridine synthase A [Bacteroides sp. 9_1_42FAA] Length = 267 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ Q NG S+Q ++ +A + + V GAGRTD+GVHA V Sbjct: 11 MRYFIYLAYDGTNYHGWQIQPNGDSVQETLMRAFSTFLRQEIEVVGAGRTDAGVHARLMV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +E V + + LN L I++ ++ V HARF A R+Y Y + Sbjct: 71 AHFDYDQELDCVQITEKLNRLL--PSDIAVYDVKRVKDDAHARFDATYRTYKYYV--TIR 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSF 180 + AW + SLD E M AA+ L DFT+F +H + R + Sbjct: 127 KDPFNRHYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMYAEWTRVS 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +R+ VG+L VG GK T K ++ +DR G P L+ Sbjct: 187 GTEWVFTIKADRFLRNMVRAVVGTLVEVGRGKMTLDGFRKVIENKDRCSAGSSVPGHALF 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LVDVGY 252 >gi|257058139|ref|YP_003136027.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] gi|256588305|gb|ACU99191.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 8802] Length = 293 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQ Q N ++Q IE AI V GE V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+V LNA L + I I + V +HARFSA R Y Y T Q Sbjct: 70 AHFDMVSPIPASRWVDILNARL--PEDILIRGSAQVPLTWHARFSAQWRRYRYTFYTEQR 127 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K +W D M+ A L+GRH F + + + Sbjct: 128 PNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQSTHCHRQ 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + + + Q R+ AP +GL Sbjct: 188 GPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYAAPAKGLC 247 Query: 241 FDSVEY 246 V Y Sbjct: 248 LLRVGY 253 >gi|331007056|ref|ZP_08330287.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] gi|330419141|gb|EGG93576.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC1989] Length = 286 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 137/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + IEY G + G+Q Q + ++Q ++E A+ LV E + + AGRTD+GVHA Sbjct: 24 MQRVALGIEYAGHVFHGFQSQPHDEKTVQSALENALSLVANEPIKLVCAGRTDAGVHATN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+ HFD + + + NA L D ++I V FH+RFSA R+Y Y I Sbjct: 84 QIVHFDTLAKRKDTAWLRGANAKL--PDGVAIRWAQDVSCDFHSRFSAKHRTYRYVIYNS 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL K +SLD + M A+Q LVGRHDF FR+ CQA++ IR + + V+ Sbjct: 142 RTHSALLKNFVTWDRRSLDIDAMAEASQALVGRHDFNAFRASQCQANNAIRDMHYIKVHR 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I I V A +FL+ +R+ VG L + G+ + ++ L+++DR+ G A P+GL Sbjct: 202 QNDFIVIEVQATAFLYHMVRNIVGVLSTIAAGEKPVSWAKEVLESKDRRCGGITASPDGL 261 Query: 240 YFDSVEY 246 Y +VEY Sbjct: 262 YLVAVEY 268 >gi|68171651|ref|ZP_00545015.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88658037|ref|YP_507432.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] gi|123750061|sp|Q2GGK1|TRUA_EHRCR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|67998925|gb|EAM85612.1| tRNA pseudouridine synthase [Ehrlichia chaffeensis str. Sapulpa] gi|88599494|gb|ABD44963.1| tRNA pseudouridine synthase A [Ehrlichia chaffeensis str. Arkansas] Length = 245 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 111/246 (45%), Positives = 157/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+QK+ +SIQ +E AI + + V+ AGRTD+GVHAL Q Sbjct: 1 MRYKITIEYNGSNFIGWQKQKHSSNSIQEILENAILKFSQQHTTVYVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL ++ A+N +L I I+IL++ D +FHARFSA +R YLY+II R Sbjct: 61 VAHFDLTTNLDTYVVRNAINYHL-IPHAIAILSVEKTDDKFHARFSAKKRHYLYKIINRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +PL ++ RAWLI L+ ENM A +++ G HDF++FR+ HCQ+ +PI+TID + Sbjct: 120 SPLTIDYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKNPIKTIDDLKIIHN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I + A SFLH Q+R VG+L G ++ ++ L+A++R G APP GLY Sbjct: 180 NQSINIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY 239 Query: 241 FDSVEY 246 F V+Y Sbjct: 240 FVKVDY 245 >gi|282859476|ref|ZP_06268581.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] gi|282587704|gb|EFB92904.1| tRNA pseudouridine synthase A [Prevotella bivia JCVIHMP010] Length = 255 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 118/259 (45%), Gaps = 17/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NGSS+Q ++EKAI ++ E + + GAGRTD+GVHA Sbjct: 1 MQRYFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ + V HARFSA RR+Y Y + T++ Sbjct: 61 VAHFDFTGSVDCHQMVYRLNRLL--PHDISVSKIEPVTNDLHARFSASRRTYHYYLHTQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + + + +LD + M AAQ+L+G DF F + I + Sbjct: 119 NIYQRQ--YSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPI 176 Query: 180 ------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + A FL +R+ VG+L VG GK + + + R Sbjct: 177 RAELSMPLSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTR 236 Query: 228 KECGPLAPPEGLYFDSVEY 246 + G P L+ V Y Sbjct: 237 SDAGESMPGNALFLWEVIY 255 >gi|258406231|ref|YP_003198973.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] gi|257798458|gb|ACV69395.1| tRNA pseudouridine synthase A [Desulfohalobium retbaense DSM 5692] Length = 254 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ + GWQ Q ++QG +E A + + VHGAGRTDSGVHA+ Q Sbjct: 1 MPRLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ E + KALNA L I++ + V FHARFSA + Y Y I T Sbjct: 61 VCHCDIPPEKNHIPWQKALNAIL--PKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDVN 178 + ++ +D M +AA+ L G DF F++ S +RT+ H + Sbjct: 119 RYVLPQRRPLVWSVGRVDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVYHLAPEPG 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + GN A FL +R+ +G L VG K + +++ L+ Q R+ APP+G Sbjct: 179 AAGNESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAPATAPPQG 238 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 239 LCLRKVKY 246 >gi|312149333|gb|ADQ29404.1| tRNA pseudouridine synthase A [Borrelia burgdorferi N40] Length = 246 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 121/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|116493132|ref|YP_804867.1| pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] gi|116103282|gb|ABJ68425.1| Pseudouridylate synthase [Pediococcus pentosaceus ATCC 25745] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +RY +I+ Y+G+ + G+Q Q N +++G +++ + + + V+G+GRTD+GVHAL Sbjct: 1 MRYKIILAYDGTNFAGFQMQPNQRTVEGVLKRIVNKIAKNPTPEISVYGSGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFDL E + ALN+ L + + + IVD+ FHARF+ + Y YR+ Sbjct: 61 GQVVHFDLSIEMSERSMLHALNSQL--PLDMQVKKVEIVDETFHARFTTHGKKYQYRMAL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 Q ++ ++ ++ A + L G HDF++F + +RTI V Sbjct: 119 GQFVDPFKRNYTGHWKFPINIGLIQKAIKDLEGTHDFSSFVASGSTVKDHVRTIYEAKVW 178 Query: 179 SF--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 N I FL+ +R V L +G + + D+ + + +DR + AP Sbjct: 179 EDKKQNEIVFEFYGNGFLYNMVRIMVAVLVEIGSKRRPADDIPRLFEVKDRNQARGTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V+Y Sbjct: 239 SGLYLKEVDY 248 >gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1] Length = 284 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 18 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVICAGRTDAGVHGCGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 78 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSRPMPADFHARFKACARRYRYVIYNDPI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 136 RPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 196 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|322806167|emb|CBZ03735.1| tRNA pseudouridine synthase A [Clostridium botulinum H04402 065] Length = 246 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKHSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|307719509|ref|YP_003875041.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] gi|306533234|gb|ADN02768.1| hypothetical protein STHERM_c18330 [Spirochaeta thermophila DSM 6192] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q Sbjct: 4 RNIKVVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQC 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F + ALN++L + L V FHAR+SA+RR Y Y + Sbjct: 64 INFITDIDSLPVEKFALALNSFL--PRDVKALQAEEVPPDFHARYSAVRREYRYYVFPSP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + + D + A +VG HDF++F S + S +R I Sbjct: 122 SPYPHLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ Sbjct: 182 GSQLVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMRKILEARDRSAASDSAPAWGLF 241 Query: 241 FDSVEY 246 V+Y Sbjct: 242 LHEVQY 247 >gi|332886051|gb|EGK06295.1| tRNA pseudouridine synthase A [Dysgonomonas mossii DSM 22836] Length = 250 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG S+Q +IEKA+ + + + GAGRTD+GVHA Sbjct: 1 MRRYFIYLAYNGENYCGWQIQPNGVSVQEAIEKALTTLLRTPIAIVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD + + L K LN+ L ISI N+ V HARF A R Y Y I T Sbjct: 61 AAHFDYEAANLDLPLLAKKLNSIL--PKDISIYNIVEVKPDAHARFDATSRLYRYYITTE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +LD + M A L DFT+F +H + TI Sbjct: 119 --KDPFLYHLKYKVHGNLDIDKMNACADILFEYEDFTSFSKLHTDVKTNNCTILAAQWEK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + A FL +RS VG+L G GK S ++ + ++A++R E G P L Sbjct: 177 KGNDYIFTIKANRFLRNMVRSIVGTLLEAGKGKIDSGEMRRIIEAKNRGEAGISVPGHAL 236 Query: 240 YFDSVEYS 247 + + +EY+ Sbjct: 237 FLEEIEYN 244 >gi|255526720|ref|ZP_05393623.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|255509607|gb|EET85944.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 249 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 134/251 (53%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA VA+F + K L +L + I + +L ++FHAR++A ++YLY Sbjct: 61 HAENYVANFHTDSILTVEDMLKYLYEFL--PEDIVVKSLRDTSERFHARYNAKSKTYLYT 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + + A+ + ++L+ MR AA+ L G HDF +F S+ S +RTI++ Sbjct: 119 INNNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + +I I V SFL +R VG+L VG G +D+EK L + R E GP+A Sbjct: 179 SITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAA 238 Query: 236 PEGLYFDSVEY 246 +GL ++Y Sbjct: 239 AKGLCLKDIQY 249 >gi|90422327|ref|YP_530697.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] gi|123089809|sp|Q21B58|TRUA_RHOPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|90104341|gb|ABD86378.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB18] Length = 245 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 131/246 (53%), Positives = 172/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IIEY+G+ Y GWQ Q NG S+QG++E A+ + G+ V V+GAGRTD+GVHAL Q Sbjct: 1 MPRYKLIIEYDGAPYCGWQIQDNGPSVQGALETAVKAICGKFVRVNGAGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L LNA+L+ I +L+ IV F ARFSAI+R Y+YRI R+ Sbjct: 61 VAHCDIAKEFAPGRLRDGLNAHLR-PHPIGVLSAEIVPDDFEARFSAIKRHYVYRISNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G+ W +P+ LD + M AAQ LVG+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALQIGKVWRLPRRLDTDAMHAAAQRLVGKHDFTTFRDTECQAKSPDKTLDQLDVIRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDNVSIITSARSFLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRTACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|238855099|ref|ZP_04645427.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260664884|ref|ZP_05865735.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|282931908|ref|ZP_06337380.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|238832343|gb|EEQ24652.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 269-3] gi|260561367|gb|EEX27340.1| tRNA pseudouridine synthase A [Lactobacillus jensenii SJ-7A-US] gi|281303960|gb|EFA96090.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 262 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 134/250 (53%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ ++ G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMSKGKRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P ALN+ + I SIVD+ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANKMVLALNSM--MPTDIVFKEASIVDESFHVQYSTKGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ P LD M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLDVSKMQEAASDLLGEHDFTSFAASGGQIIDKVRTIFYVKIW 178 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 E + FL+ +R VG+L +G+G+ DLE+ + A+DR+E AP Sbjct: 179 QKPEENEIVFDFIGNGFLYNMVRIMVGALLEIGNGRRPIHDLERVILAKDRQEVRNTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 239 SGLYLYHVFY 248 >gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 143/247 (57%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y M++EY+GS Y GWQ+Q N +IQG IE+ + +TG+ V VHG+GRTD+GVHAL Q Sbjct: 3 KNYRMVLEYDGSRYDGWQKQGNTEQTIQGKIEQVLERMTGQAVEVHGSGRTDAGVHALAQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + + LN YL + I ++ L ++FH+R +A ++YLYRI + Sbjct: 63 VANFHMDGKMASKEIQEYLNQYL--PEDIRVITLEPAKERFHSRLNAQEKTYLYRIEMGE 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + + KSL+ E M A+ +L G HDF +F S S +R + + Sbjct: 121 RKQVFERKYIYGLYKSLNVEAMERASAYLTGEHDFKSFCSNRKMKKSTVRVLKEIEFEQQ 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + IR FL+ +R G+L VG G+ + D++ L+A+DR + G APPEGL+ Sbjct: 181 GSRLLIRYTGNGFLYNMVRIITGTLIEVGLGQRKAEDMKGILEAKDRNQAGFTAPPEGLF 240 Query: 241 FDSVEYS 247 + V Y+ Sbjct: 241 LEQVRYN 247 >gi|225013075|ref|ZP_03703490.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] gi|225002803|gb|EEG40784.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-2A] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 113/246 (45%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQRQ N S+Q +E A+ + E + + +GRTD+GVHA + Sbjct: 1 MRYFLEFSYAGTNYHGWQRQPNAVSVQEVLEHALSTLLKETISLLASGRTDTGVHARQMF 60 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD LN +L I + +L V + HARF A+ RSY Y I + Sbjct: 61 AHFDGKLSLETFQQLVYQLNQFL--PQDIVVHSLREVKAEAHARFDALSRSYEYHIALGK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P I + LD E M AA L+ DF F + + I + + Sbjct: 119 TPFGNSMHY--RINQDLDLEAMNEAAAILLEYEDFECFSKSRTDVKTFLCDISYAQWSKT 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + A FL +R+ VG+L +G K DL ++++ R + G P +GL+ Sbjct: 177 KNGYIFTITANRFLRNMVRAIVGTLIEIGLKKKEIEDLRGIIKSKSRSKAGFSVPAQGLF 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LTRIEY 242 >gi|291524335|emb|CBK89922.1| pseudouridylate synthase I [Eubacterium rectale DSM 17629] gi|291527615|emb|CBK93201.1| pseudouridylate synthase I [Eubacterium rectale M104/1] Length = 244 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 1 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN L + I +++ V FH RFS R++Y YRI+ + Sbjct: 61 CMFDTNTRMPAEKISYALNQKL--PEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 119 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + A DR GP AP GL Sbjct: 179 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIAATDRAAAGPTAPAHGLTM 238 Query: 242 DSVEY 246 ++Y Sbjct: 239 IGLKY 243 >gi|153939803|ref|YP_001391236.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] gi|152935699|gb|ABS41197.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. Langeland] Length = 246 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ IE + + GE V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNNDTTIQHKIESVLNELLGEKVSLMASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + K L YL ++ +N + FH+R++ + Y YRI Sbjct: 61 QVANFKTDSEISNDEIFKYLYKYLPQDIVVTSVNNA--SDNFHSRYNVKEKVYTYRIHNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ I + LD + M+ A++ +G HDF +F ++ + S ++ I+ Sbjct: 119 EVHDVFTRKYSYHIKEKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKAINSITFRK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IEI FL+ IR VG+L G K + +++ + +DR AP GL Sbjct: 179 KENDIEIVFSGNGFLYKMIRILVGTLIQAGLNKISLDEIQNIMDKKDRNIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 TLTEVKY 245 >gi|88608581|ref|YP_505923.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] gi|123763741|sp|Q2GF33|TRUA_NEOSM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88600750|gb|ABD46218.1| tRNA pseudouridine synthase A [Neorickettsia sennetsu str. Miyayama] Length = 243 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 106/246 (43%), Positives = 153/246 (62%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I+EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKAIVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P + A+N +LK + +L + IVD+ F ARFSAIRR Y Y+I R+ Sbjct: 61 FHFDARESTLQPFQIVNAVNYHLKEKLIV-LLKIEIVDETFDARFSAIRRHYQYKITNRK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PLA+ K R+W +P++L+ + +R AQ+LVG+HDF +FRS C AS+ IRT+D +V Sbjct: 120 TPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQSFRSSKCGASNAIRTLDRLEVEKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A+SFLH Q+R VG+L + GK + + L ++R+ GP APP GLY Sbjct: 180 GEEMIFHASAKSFLHHQVRIMVGTLVAIASGKLM--SVTEILSKKNRRYAGPTAPPCGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LLKVDY 243 >gi|254460774|ref|ZP_05074190.1| tRNA pseudouridine synthase A [Rhodobacterales bacterium HTCC2083] gi|206677363|gb|EDZ41850.1| tRNA pseudouridine synthase A [Rhodobacteraceae bacterium HTCC2083] Length = 259 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 123/250 (49%), Positives = 158/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S+QG IE A+ + + AGRTDSGVHA Q Sbjct: 1 MPRYALKVEYHGAPFVGWQRQKTHVSVQGQIEAALAKLEPGNHTIGAAGRTDSGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L ALN +LK D ISI+ + V+ +HARFSA+ R Y +R++ R+ Sbjct: 61 VAHCDLAKDWDPFKLSGALNYHLK-PDPISIVACAEVNDDWHARFSALERRYEFRLLMRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + G W +P LD M+ AQHL+G HDFTTFRS CQA SP++T+D V Sbjct: 120 PPATHDAGLVWQVPHLLDVNAMQAGAQHLLGLHDFTTFRSSICQAQSPLKTLDELKVRQI 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I V ARSFLH Q+RSFVG+L VG G WT D++ ALQAQDR+ CGP++PP Sbjct: 180 DGPSGPEIRFTVRARSFLHNQVRSFVGTLGSVGSGAWTPDDVKSALQAQDRQACGPVSPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVTY 249 >gi|115358097|ref|YP_775235.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] gi|122321799|sp|Q0BAC2|TRUA_BURCM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115283385|gb|ABI88901.1| tRNA pseudouridine synthase A [Burkholderia ambifaria AMMD] Length = 270 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGVQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMPETFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRTLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|168493506|ref|ZP_02717649.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] gi|183576362|gb|EDT96890.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae CDC3059-06] Length = 249 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVLHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E MR A + L G HDFT F + IRTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMREAIKKLEGTHDFTGFTASGTSVEDKIRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEICY 247 >gi|148270348|ref|YP_001244808.1| tRNA pseudouridine synthase ACD [Thermotoga petrophila RKU-1] gi|166229847|sp|A5IM09|TRUA_THEP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|147735892|gb|ABQ47232.1| tRNA pseudouridine synthase A [Thermotoga petrophila RKU-1] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYIQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F++ + + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSFKTGSDERDPVRTIYRIRILRL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP GL Sbjct: 179 KNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHGL 238 Query: 240 YFDSV 244 YF V Sbjct: 239 YFYKV 243 >gi|121998585|ref|YP_001003372.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] gi|121589990|gb|ABM62570.1| tRNA pseudouridine synthase A [Halorhodospira halophila SL1] Length = 266 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++EY+G+G+ GWQRQ + S+Q ++E A+ + V V AGRTD+GVHA QV Sbjct: 8 QRIALVLEYDGTGFSGWQRQDDAPSVQEALEGAVSRIANHPVAVVCAGRTDAGVHAAAQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD NA L +T+S+ + VD FHAR+ A RR Y Y + R+A Sbjct: 68 VHFDTTASRPLHAWVLGTNAQL--PETVSVRSAHAVDADFHARYQAQRRGYRYVFLCRRA 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + R LD M AAQ LVG HDF+ FR+ CQA +R + DV+ G Sbjct: 126 RPALLRHRVAWTHHELDEGRMHRAAQALVGEHDFSAFRAAACQAPHAVREVYRLDVHRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ I + A +F+H +R+ G+L VG G+ L A DR G AP GLY Sbjct: 186 ELLFIDIEANAFVHHMVRNIAGTLMAVGTGEQPEHWPAGLLAAGDRTRSGMTAPAAGLYL 245 Query: 242 DSVEY 246 V Y Sbjct: 246 TRVVY 250 >gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804] gi|229557953|sp|A9IRL0|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii] Length = 268 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 131/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV--HGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G + AGRTD+GVHA Sbjct: 1 MPRMALGLAYDGSSWQGWQTQPHRQTVQDTLEAALARFAGIDGSLPTVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D E + +NA+L S + V FHARFSA R+YLY + Sbjct: 61 MQVVHLDTRLERRAESWVRGVNAFLPPSIAVQW--AQPVPDDFHARFSARSRTYLYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L GRA + LD + MR AA L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPPLWAGRAGWCFQPLDVQAMRQAASALLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L +G G+ + L A+DR+ P +G Sbjct: 179 ERGPFLVFTLRANAFLHHMVRNLMGALLQIGQGRQPVAWMPAVLAARDRRLAAPTFAADG 238 Query: 239 LYFDSVEY 246 LY ++EY Sbjct: 239 LYLSAIEY 246 >gi|88801321|ref|ZP_01116849.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] gi|88781979|gb|EAR13156.1| tRNA pseudouridine synthase A [Polaribacter irgensii 23-P] Length = 241 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQ Q + S+Q + AI V V V GAGRTD+GVHA++ Sbjct: 1 MRYFIELSYNGTKYHGWQIQPDMVSVQEKLNNAISTVLQSKVEVVGAGRTDTGVHAVQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + K LN+ L + IS+ + V + HARF A RSY YRI + Sbjct: 61 AHFNTEILIENNFVHK-LNSIL--PNDISVDKVLEVLEDKHARFDAKSRSYEYRIWLGRN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P L+ + + D M AA L+ +F TF + + + + G Sbjct: 118 PFLLD-FSWQIHSQKPDLSKMNAAAILLLEYENFQTFSKVKTEVHTFNCNVTAAFWRQEG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 NL+ + A FL +R+ VG+L VG GK + + + +++++R G P +GL+ Sbjct: 177 NLLIFHISANRFLRNMVRAIVGTLVDVGLGKISIAEFRQIIESKNRSNAGLSVPAKGLFL 236 Query: 242 DSVEY 246 ++Y Sbjct: 237 TQIKY 241 >gi|313676221|ref|YP_004054217.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312942919|gb|ADR22109.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 247 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y G+ Y GWQ+Q N +Q IE+ + + + G+GRTDSGVHA QV Sbjct: 1 MRYFFTIAYKGTQYHGWQKQPNAIGVQQKIEEVFSTILNQKSEIVGSGRTDSGVHATAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P+ L N L +++ + +V ++ HARF A R+Y Y I+T + Sbjct: 61 FHFDYSGELDPLQLVFKANKML--PKDVALKHAKLVKEEAHARFDAESRAYQYHIVTEKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+++ + +++ N+ A+ L+ DF +F + + +I Sbjct: 119 PFAIDQAYFFTQELAIEKMNLA--AEKLLNYQDFESFSKVKTDVFTFNCSIFEAIWKQEV 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG K + + E+ ++A++RK G P GLY Sbjct: 177 DSLVFHIKANRFLRGMVRAIVGTLLDVGQHKISIENFEEIIKAKNRKSAGRAVPAHGLYL 236 Query: 242 DSVEY 246 V+Y Sbjct: 237 TEVQY 241 >gi|332141777|ref|YP_004427515.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] gi|327551799|gb|AEA98517.1| tRNA pseudouridine synthase A [Alteromonas macleodii str. 'Deep ecotype'] Length = 264 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + IEY+G+ +GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA Q Sbjct: 1 MGRIALGIEYDGAAVYGWQRQREVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +NA L S ++ V FHARFSA R Y Y I + Sbjct: 61 VVHFNCDAPRSERAWTLGVNANLPNSVAVTW--AKNVADDFHARFSATHRRYRYVIHNAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ I + LD + M +AAQ L+G DFT+FR+ CQ+ +P R + + V Sbjct: 119 MRPAILSSGVTHIHRELDEKKMHLAAQALLGEQDFTSFRAALCQSKTPFRNVTNVGVYRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +FLH +R+ G+L +G G+ + L +DR + A P GLY Sbjct: 179 GRYVIIDIRANAFLHHMVRNITGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVDVTY 244 >gi|168180502|ref|ZP_02615166.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] gi|182668817|gb|EDT80795.1| tRNA pseudouridine synthase A [Clostridium botulinum NCTC 2916] Length = 246 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + V+++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVNERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|225857220|ref|YP_002738731.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] gi|254764871|sp|C1CLU3|TRUA_STRZP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225725422|gb|ACO21274.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae P1031] Length = 249 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQSHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQIDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 + + + A P LD E M+IA + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVEDKVRTITEASLIV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + + L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIALILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|312866252|ref|ZP_07726471.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] gi|311098225|gb|EFQ56450.1| tRNA pseudouridine synthase A [Streptococcus downei F0415] Length = 248 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+QRQ S+Q +EK + + +G V VHGAGRTDSGVHA Sbjct: 1 MVRYKAIISYDGTLFAGFQRQSKERSVQEELEKTLERLNSGNPVKVHGAGRTDSGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L L+ + + I ++++ V + FHAR++ ++Y + + T Sbjct: 61 QVIHFDLPQTRDEEKLRFGLDT--QSPEDIDVVSVEQVPEVFHARYNPHSKTYEFLVDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P +D M+ A L+G HDFT F + + +RTI + Sbjct: 119 RPKNPMMRAYATHFPYPVDLGAMQEAIADLLGTHDFTGFTASGTSVENKVRTISQAKVER 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + FL+ Q+R+ VG+L +G+G+ + ++ L A+DR GP A Sbjct: 179 DPKTGFLVFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQIKTILAAKDRNLAGPTAAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEITY 247 >gi|291520511|emb|CBK75732.1| pseudouridylate synthase I [Butyrivibrio fibrisolvens 16/4] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +++ Y+GS Y GWQ Q NG +I+ + +A+ + E + + GA RTD+GVH+L V Sbjct: 1 MRVMIVVAYDGSNYSGWQIQPNGVTIEQKLNEALTDLLQEPISIMGASRTDAGVHSLGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FD + ALN L D I + V+ FH R++A R++Y Y+I+ R+ Sbjct: 61 AVFDTNSRMPADKISFALNQRL--PDDIVVQYSCQVEDDFHPRYAACRKTYEYKILNRKM 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++ + LD E M AA +L+G+HDFT+F S+ Q S +RTI V Sbjct: 119 PDPTKRKDTFHYYYDLDVEKMNEAAAYLIGQHDFTSFSSVKAQVKSRVRTIYTAKVYKED 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IR+ FL+ +R G+L VG G+ + + + ++R+ GP AP GL Sbjct: 179 DVIHIRLTGDGFLYNMVRIIAGTLIKVGAGEMEPMYMLEIFRGRNRELAGPTAPAHGLTM 238 Query: 242 DSVEY 246 +EY Sbjct: 239 IGIEY 243 >gi|15594358|ref|NP_212146.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31] gi|3915171|sp|P70830|TRUA_BORBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2687883|gb|AAC66394.1| pseudouridylate synthase I (hisT) [Borrelia burgdorferi B31] Length = 246 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|309798794|ref|ZP_07693058.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] gi|308117611|gb|EFO55023.1| tRNA pseudouridine synthase A [Streptococcus infantis SK1302] Length = 249 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IE + + G+ + +HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEITLTKLNKGQAITIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQLAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|307702068|ref|ZP_07639075.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] gi|307616555|gb|EFN95745.1| tRNA pseudouridine synthase A [Streptococcus mitis NCTC 12261] Length = 249 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGYAFAGFQRQTHARSVQEEIEKTLTRLNKGKAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIELVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLRV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|219684777|ref|ZP_03539719.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] gi|219671722|gb|EED28777.1| tRNA pseudouridine synthase A [Borrelia garinii PBr] Length = 246 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + I IL L V FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNAILL-KNGIKILKLKYVKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNFARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|118443953|ref|YP_878363.1| tRNA pseudouridine synthase A [Clostridium novyi NT] gi|118134409|gb|ABK61453.1| tRNA pseudouridine synthase A [Clostridium novyi NT] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ IE + + E V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNNDNTIQHKIESVLGELLKEEVALIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + K L YL I + +++ + FH+R++ + Y YRI Sbjct: 61 QVANFKTDSRISNDEISKYLYKYL--PQDIVVKSVNEASENFHSRYNVKEKVYTYRIHNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + + LD + M+ A++ +G HDF +F ++ + S ++TI+ Sbjct: 119 EVHDVFTRKYSYHVREKLDLKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTINSITFRK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + IEI FL+ IR VG+L VG K + D++ + +DR AP GL Sbjct: 179 KEDDIEIVFSGNGFLYKMIRILVGTLVEVGLNKISIDDVKDVMDKKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 TLTEVKY 245 >gi|293604664|ref|ZP_06687064.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] gi|292816833|gb|EFF75914.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553] Length = 270 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 136/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G + V AGRTD+GVH Sbjct: 2 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLESALARFCGVQDPVPTICAGRTDTGVHGA 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L ++S+ V +FHARFSA R+Y+Y + Sbjct: 62 MQVVHLDTSLDRRMESWVRGVNAFL--PPSVSVQWAQEVSDEFHARFSARARTYVYLLWR 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA ++LD + MR AAQ LVG HDF++FRS CQA P+R + D+ Sbjct: 120 GRVRPALWAGRAGWCFQTLDVDAMRAAAQALVGEHDFSSFRSSQCQAKHPVRHMHRLDIA 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ + + + L +DR P P+G Sbjct: 180 ERGPFLVFTLKANAFLHHMVRNIMGALLQVGQGRESVDWMAQLLSLRDRTRGAPTFAPDG 239 Query: 239 LYFDSVEY 246 LY S++Y Sbjct: 240 LYLSSIDY 247 >gi|189423417|ref|YP_001950594.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] gi|189419676|gb|ACD94074.1| tRNA pseudouridine synthase A [Geobacter lovleyi SZ] Length = 262 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +II+Y+G+ Y GWQ Q NG SIQ ++E A+ + G+ V V +GRTD+GVHA+ Sbjct: 17 MRTIKLIIQYDGTNYCGWQEQTNGPSIQETVELALAKILGQRVRVQSSGRTDAGVHAVAM 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F +N +L D I+I + V F A A ++Y Y I Sbjct: 77 PAVFRTESTIPLKAFVDGVNCHL--PDDIAIQSAVEVPTGFRAIGGARSKTYRYTIYNAP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + + LD + M+ AA + VG HDF FR +C A + R ID +N Sbjct: 135 VRSPLNRRTSWHVREQLDLQAMQQAAAYFVGEHDFAAFRGANCSAVTSRRRIDAVQINQS 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V FL +R G+L VG G++ + L DR+ G APP+GL Sbjct: 195 GPLITIDVTGGGFLKYMVRIMAGTLVDVGRGRFAPEHVAGLLAEPDRQRGGVTAPPQGLS 254 Query: 241 FDSVEY 246 V Y Sbjct: 255 LLQVIY 260 >gi|170760365|ref|YP_001787307.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] gi|169407354|gb|ACA55765.1| tRNA pseudouridine synthase A [Clostridium botulinum A3 str. Loch Maree] Length = 246 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L+ +DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILEVEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|170754451|ref|YP_001781475.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] gi|169119663|gb|ACA43499.1| tRNA pseudouridine synthase A [Clostridium botulinum B1 str. Okra] Length = 246 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQCSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L+A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILEAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|168705501|ref|ZP_02737778.1| tRNA pseudouridine synthase A [Gemmata obscuriglobus UQM 2246] Length = 263 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M +II Y+G+ +FGWQ Q ++Q ++EKAI +T E V ++ +GRTDSGVHA+ Sbjct: 1 MRNLKLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ + +L KA+NA L + + + ++ + F A A+R+ Y Y + Sbjct: 61 QVANVYTASKLSCAVLLKAINAKL--PEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW + + L+ E M A++ LVGRHDF F + + +RTI H VN Sbjct: 119 RLQDPFLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG I I V A FL+ +R+ GSL VG G W T + L A DR+ GP APPEGL Sbjct: 179 FGECIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLMRVTY 245 >gi|163757847|ref|ZP_02164936.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] gi|162285349|gb|EDQ35631.1| tRNA pseudouridine synthase A [Hoeflea phototrophica DFL-43] Length = 255 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 141/249 (56%), Positives = 176/249 (70%), Gaps = 3/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+GSGY GWQRQ + SIQ +IE AI G+ V + GAGRTD+GVHA Q Sbjct: 1 MPRYRLDIEYDGSGYAGWQRQDDHPSIQQAIETAIHGFCGQAVSIRGAGRTDAGVHAWGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH DL +W + A+NA+L+++ ++IL V + F ARFSA RR Y+YRII R Sbjct: 61 VAHVDLENQWSDDTVRDAINAHLQMARERVAILAAREVPEDFDARFSATRRHYVYRIICR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL +EK RA P+ LD E M AAQ LVGRHDFTTFRS+ CQA SP+R++D DV Sbjct: 121 RAPLVIEKNRALWSPRPLDAEAMHEAAQRLVGRHDFTTFRSVQCQADSPVRSLDRLDVTR 180 Query: 180 --FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 F LIEI ARSFLH QIRSF G+L+LVG+GKWT+ D++ AL+A+ RK CGP+A PE Sbjct: 181 GGFDGLIEIHATARSFLHNQIRSFAGTLRLVGEGKWTADDVQIALEARSRKACGPVAAPE 240 Query: 238 GLYFDSVEY 246 GLYF V+Y Sbjct: 241 GLYFRQVDY 249 >gi|261409491|ref|YP_003245732.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|329922021|ref|ZP_08277814.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] gi|261285954|gb|ACX67925.1| tRNA pseudouridine synthase A [Paenibacillus sp. Y412MC10] gi|328942404|gb|EGG38668.1| tRNA pseudouridine synthase A [Paenibacillus sp. HGF5] Length = 263 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 122/256 (47%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E+AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMKVSYDGTDYNGFQTQPGGHTIQDYLEEAIRRLSGEQLKITASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN +L + I + + V +FH+R +A R++Y + I Q Sbjct: 61 VFNFYTASPIPVERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRFTINANQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + LD M HL+G HDFTTF S S +RTI + Sbjct: 119 YPDLFNRRYQIHHHGKLDIAAMEQGLSHLIGTHDFTTFASRKSTKPSHVRTIFDAWIEKD 178 Query: 181 GNLI----------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ V FL +R +G+L VG+GK D++ L+AQ+R Sbjct: 179 TSMCRPGTRDQGIIHTYVSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKVILEAQNRAAA 238 Query: 231 GPLAPPEGLYFDSVEY 246 GP A +GL V+Y Sbjct: 239 GPTAMGKGLMLWEVDY 254 >gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4] Length = 255 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +EY+GS Y GWQ+Q N ++IQG +E +F + GE + VHG+GRTD+GVHA QV Sbjct: 4 NIRITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFRMAGEEIEVHGSGRTDAGVHARGQV 63 Query: 62 AHFDLVREWVPVIL--CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A+F + E P + LN YL D I +L+ IV ++FH+R SA ++Y Y + T Sbjct: 64 ANFHINAEICPDGEAAREYLNRYL--PDDIRVLSAKIVPERFHSRLSATSKTYGYYVETG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 E+ + K LD + MR AA+ L+G HDF +F + S +R ID + Sbjct: 122 DKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDFKSFCANRRMKKSTVRRIDEIRIVE 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +E FL+ +R G+L VG G +++ + A++R G APPEGL Sbjct: 182 HGTKLEFLYTGNGFLYNMVRILTGTLLEVGSGTRRPEKMKEIIAAKNRDMAGRTAPPEGL 241 Query: 240 YFDSVEY 246 + V Y Sbjct: 242 FLLHVGY 248 >gi|225630801|ref|YP_002727592.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] gi|254764876|sp|C0R4F9|TRUA_WOLWR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225592782|gb|ACN95801.1| tRNA pseudouridine synthase A [Wolbachia sp. wRi] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 114/246 (46%), Positives = 154/246 (62%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I I++ A SFLH Q+R G+L G + ++ L R G APP GLY Sbjct: 180 GNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLY 239 Query: 241 FDSVEY 246 ++Y Sbjct: 240 LVKIDY 245 >gi|322392372|ref|ZP_08065833.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] gi|321144907|gb|EFX40307.1| tRNA pseudouridine synthase A [Streptococcus peroris ATCC 700780] Length = 249 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY +I Y+G + G+QRQ + S+Q IEK + + + V +HGAGRTDSGVHAL Sbjct: 1 MTRYKAVISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGLGVTIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMEEEKLRFALDT--QSPEDIDVISVEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+ A + L G HDFT F + +RTI V Sbjct: 119 RPKNPMRRHYATHYPYPLDVERMQKAVKKLEGTHDFTGFTASGTSVEDKVRTITEASLKV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPIEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|288801196|ref|ZP_06406651.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] gi|288331807|gb|EFC70290.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 299 str. F0039] Length = 245 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+++Q ++KA+ L+ + V GAGRTD+GVHA Sbjct: 1 MQRYFIYFAYDGTNYHGWQIQPNGNTVQEELQKALSLILRCNINVVGAGRTDTGVHARSM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ E V + + I + + V + HARFSA R+Y Y + + Sbjct: 61 VAHFDISTEIVFDAELLSGKLNRLLPPDIVVFAIKPVAEDMHARFSATWRTYHYYVH--K 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + LD M AA++L+ DF F H A + + + Sbjct: 119 GKDPFVRNYSYSYYRDLDFTLMNEAARYLLEVEDFEAFCKSHSDAKTTLCNVTKAQWIQD 178 Query: 181 GN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG K T + + + + R G P L Sbjct: 179 DDTHWHFVIKANRFLRNMVRAVVGTLVEVGQHKITIEEFKNIVDQRKRIGAGESMPAHAL 238 Query: 240 YFDSVEY 246 + + VEY Sbjct: 239 FLEKVEY 245 >gi|270262840|ref|ZP_06191111.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] gi|270043524|gb|EFA16617.1| tRNA pseudouridine synthase A [Serratia odorifera 4Rx13] Length = 273 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+Q S+E+A+ V + V AGRTD+GVHA QV Sbjct: 13 KIALGIEYDGSRYYGWQRQQEVASVQASLEQALSKVANAPISVLCAGRTDAGVHATGQVV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +N +L I++ ++ V + FHARFSA R Y Y I + Sbjct: 73 HFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVAEDFHARFSATARRYRYIIYNHRYR 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V +G Sbjct: 131 PAVLQQGVTHFYHPLDAERMERAAQALLGENDFTSFRAVQCQSRTPWRNVKHVKVTRYGE 190 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + + L +DR A EGLY Sbjct: 191 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQSENWMAELLALKDRNLAAATARAEGLYLV 250 Query: 243 SVEY 246 SV+Y Sbjct: 251 SVDY 254 >gi|332877177|ref|ZP_08444927.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684920|gb|EGJ57767.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 268 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 111/253 (43%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTNYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLVR------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLL--PPDISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTID 173 + + + + + LD E M AA L DFT+F ++ + R + Sbjct: 119 YLH--FGKSPFLRAYSCRLYRMLDFEKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEY 246 P L+ V Y Sbjct: 237 MPGNALFLVDVAY 249 >gi|221217465|ref|ZP_03588936.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223889178|ref|ZP_03623767.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225549711|ref|ZP_03770676.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226321158|ref|ZP_03796699.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] gi|221192743|gb|EEE18959.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a] gi|223885427|gb|EEF56528.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b] gi|225369671|gb|EEG99119.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a] gi|226233450|gb|EEH32190.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805] Length = 246 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|167765202|ref|ZP_02437315.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] gi|167696830|gb|EDS13409.1| hypothetical protein BACSTE_03590 [Bacteroides stercoris ATCC 43183] Length = 251 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 115/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + LN L IS+ L V HARF A R+Y Y + T Sbjct: 61 VAHFDSETPLDVIFMMDKLNRLL--PPDISVYRLRAVRPDAHARFDATARTYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 A + + + ++ D E M AA+ L DFT+F +H + I H Sbjct: 117 AKMPFNRQYRCRLFQTPDFERMNEAARTLFEYTDFTSFSKLHTDVKTNNCKIMHAAWTQV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ +DR G P L Sbjct: 177 DEVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTIGGFRRVIEQKDRCRAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVAY 243 >gi|306825673|ref|ZP_07459012.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432034|gb|EFM35011.1| tRNA pseudouridine synthase A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 261 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G + VHGAGRTDSGVHAL Sbjct: 13 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGHAITVHGAGRTDSGVHALG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL+ + L AL+ + + I ++++ +V FH R++ ++Y + + Sbjct: 73 QVIHFDLLYQMDEEKLRFALDT--QSPEDIDVISMELVADDFHCRYAKHSKTYEFIVDRG 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M++A + L G HDFT F + +RTI V Sbjct: 131 RPKNPMRRHYATHFPYPLDVERMQMAIKKLEGTHDFTGFTASGTSVEDKVRTITEANLTV 190 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 191 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAAPN 250 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 251 GLYLKEIRY 259 >gi|332970004|gb|EGK09003.1| tRNA pseudouridine synthase A [Psychrobacter sp. 1501(2011)] Length = 314 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 87/243 (35%), Positives = 129/243 (53%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+NGS Y GWQRQ+ +Q +E+ + + E + V AGRTD+GVH +AH Sbjct: 52 YALGIEFNGSNYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDAGVHGGNMLAH 111 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + N+ L D I+I + + FHARF AI R Y Y + + Sbjct: 112 FKTSANRGVYNWLRGANSLL--PDDIAIRWIQPMPDDFHARFGAIARRYRYITLNQPQRP 169 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ I + LD M+ AA H+VG+HDF++FR+ CQ++ P+R I H + G Sbjct: 170 AVLNHLVTHIHEPLDLAKMQQAAAHIVGQHDFSSFRAAACQSNQPVRNIHHAKLFQHGQF 229 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G G+ D + L+A+DR P A P+GLYF + Sbjct: 230 IVFDIQADGFLHHMVRNLMGTLFAIGKGELQPMDYLRILEAKDRTIAPPTASPDGLYFIN 289 Query: 244 VEY 246 Y Sbjct: 290 AYY 292 >gi|58584685|ref|YP_198258.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419001|gb|AAW71016.1| Pseudouridylate synthase (tRNA psi55) [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 249 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 156/246 (63%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + IEYNGS + GWQ+Q++ +SIQ +IE AIF +GE V +H GRTD+GVHAL Q Sbjct: 5 VRYKITIEYNGSSFSGWQKQQHSANSIQETIENAIFNFSGEKVTLHCGGRTDAGVHALGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ R++ + A+N +LK S I +LN VD FH+RFSA +R Y YRII R Sbjct: 65 VAHFDMERKFELYKIRNAINYHLK-SIPIVVLNAETVDNTFHSRFSAKKRYYEYRIINRY 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G AW + LD MR AA++L+G+H+ +FRS CQA++PIRTID D+ Sbjct: 124 APAALEAGYAWQVFNPLDVNIMREAAKYLLGKHNLLSFRSKDCQATNPIRTIDDIDIVQN 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I++ A SFLH Q+R VG+L G + + L R G APP GLY Sbjct: 184 GSHIYIKISAISFLHNQVRIIVGTLVEFGKSRTNPQKMLNILNQCKRNAAGVTAPPFGLY 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LAKIDY 249 >gi|225549204|ref|ZP_03770177.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|225370062|gb|EEG99502.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a] gi|312148421|gb|ADQ31080.1| tRNA pseudouridine synthase A [Borrelia burgdorferi JD1] Length = 246 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L + FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYIKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|167750462|ref|ZP_02422589.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] gi|167656613|gb|EDS00743.1| hypothetical protein EUBSIR_01438 [Eubacterium siraeum DSM 15702] Length = 250 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + K NA L I+ L+ + FHARF + + Y+Y+I T Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVN 178 A P D E MR AA+ +VG HDF +F + +RT+ DV Sbjct: 119 VRDVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP G Sbjct: 179 QTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLNKVFY 246 >gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48] gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48] Length = 284 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 123/246 (50%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH Q Sbjct: 17 TRIALGVEYKGSRYRGWQRQASGVPSVQQALEQALSTVANEPITVVCAGRTDAGVHGCGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L IS++ + + FHARF A R Y Y I Sbjct: 77 IVHFDTRAVRDERAWTLGTNFNL--PHDISVVWSAPMPAHFHARFKATARRYRYVIYNDP 134 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD M AA++L+G HDF+ FR+ CQA SPI+ I H V Sbjct: 135 IRPAHLAEEVTWNHRPLDVTRMAEAARYLLGTHDFSAFRASQCQAKSPIKHIHHLRVTRH 194 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 195 GQMIVLDVRATAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRNRREGGVTAHPYGLY 254 Query: 241 FDSVEY 246 VEY Sbjct: 255 LVQVEY 260 >gi|166033550|ref|ZP_02236379.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] gi|166026735|gb|EDR45492.1| hypothetical protein DORFOR_03276 [Dorea formicigenerans ATCC 27755] Length = 266 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 123/266 (46%), Gaps = 22/266 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y+G+ Y GWQ Q NG +I+ + + I +TGE + + GA RTDSGVHAL Sbjct: 1 MRRIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR-RSYLYRIITR 119 VA FD ALN K+ + I I+ V +H R+ ++Y Y I Sbjct: 61 VAVFDTESRIPGDRFAYALNQ--KMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + L+ + + LD E MR A++++G HDF +F ++ A +RT+ + Sbjct: 119 KVRNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKE 178 Query: 180 FGN-------------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I IRV FL+ +R G+L VG G + + Sbjct: 179 IPMDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRD 238 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L+A++ G APP GL S++Y Sbjct: 239 ILEAKEHTSEGITAPPNGLVLVSIDY 264 >gi|91200879|emb|CAJ73934.1| strongly similar to tRNA pseudouridine synthase I [Candidatus Kuenenia stuttgartiensis] Length = 244 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ Y GWQ QKN S+Q ++ A+ V E V +HGAGRTD+GVHAL Q Sbjct: 1 MRNVRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L +A+N +L I+I +++ +++ FHAR+SA + Y Y ++ Sbjct: 61 VANFKTYSAIPAKQLLRAINFHL--PQDITIKDVADMEEGFHARYSATSKVYRYTVLNDW 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +L + ++ LD M AAQ+L+G HDFT+F + IRTI + ++ Sbjct: 119 LRTSLNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I V A FL+ +R+ VG+L +G GK + K L+ +R + GP AP +GL Sbjct: 179 GKYIYFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLC 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 MKEVKY 244 >gi|189467951|ref|ZP_03016736.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] gi|189436215|gb|EDV05200.1| hypothetical protein BACINT_04345 [Bacteroides intestinalis DSM 17393] Length = 253 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 113/247 (45%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD V LN L ISI + V HARF A R Y Y + T + Sbjct: 61 VAHFDSDEPLDTVFFTDKLNRLL--PPDISIYRIRAVKPDAHARFDATARMYKYYVTTVK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNS 179 + + + ++ D E M AA+ L DFT+F +H + R + Sbjct: 119 S--PFNRQYRCRLFQAPDFERMNEAARILFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQV 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ +DR + G P L Sbjct: 177 DDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVEGFRRVIEQKDRCKAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVTY 243 >gi|303257106|ref|ZP_07343120.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] gi|302860597|gb|EFL83674.1| tRNA pseudouridine synthase A [Burkholderiales bacterium 1_1_47] Length = 259 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYL--PTECAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKANAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|169830466|ref|YP_001716448.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] gi|238688213|sp|B1I1B5|TRUA_DESAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169637310|gb|ACA58816.1| tRNA pseudouridine synthase A [Candidatus Desulforudis audaxviator MP104C] Length = 250 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + + Y+G+ Y G+Q+Q +IQ ++E+ + ++G + V GA RTD+GVHA Sbjct: 1 MPNVRLTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHAR 60 Query: 59 RQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + ALN L I+ L+ V FHAR+SA+ ++Y Y + Sbjct: 61 GQVVNFVTGRWGIPTERIPAALNGVL--PGDIAALDAREVPADFHARYSAVAKTYSYTLY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + +P++LD MR+AA+HL+GRHDF+TF++ S +RT+ D+ Sbjct: 119 NHPVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRADI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + L+ + A FL+ +R G+L VG + L + + DR GP PP Sbjct: 179 EAQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPH 238 Query: 238 GLYFDSVEY 246 GL + VEY Sbjct: 239 GLCLEEVEY 247 >gi|299140694|ref|ZP_07033832.1| tRNA pseudouridine synthase A [Prevotella oris C735] gi|298577660|gb|EFI49528.1| tRNA pseudouridine synthase A [Prevotella oris C735] Length = 243 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQKIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T+ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ P LD + M A+ L DF F S + TI Sbjct: 118 -KDAFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|240138195|ref|YP_002962667.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] gi|240008164|gb|ACS39390.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Methylobacterium extorquens AM1] Length = 250 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 109/250 (43%), Positives = 155/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA+L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNAHLR-PQPVAILSAEVVTQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ D Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRE 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|331000940|ref|ZP_08324577.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] gi|329569899|gb|EGG51656.1| tRNA pseudouridine synthase A [Parasutterella excrementihominis YIT 11859] Length = 259 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G + GWQ Q +G ++Q +E A+ TGE V AGRTD+ VHA QV Sbjct: 1 MRVALGLEYDGRSFEGWQTQPSGQTVQDYLEAAVVQFTGEKVKAVCAGRTDANVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D + + + LN+YL ++ +V +FHARFSA R+Y Y I+ Sbjct: 61 IHLDTGADRKEISWVRGLNSYL--PTECAVRWAKVVPDEFHARFSACSRTYEYWIVNEPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GR + + L+ +NM A Q LVG HDF++FR+ CQ+ +P++ I++ V G Sbjct: 119 RSPILSGRTGWVFRPLNEKNMEAAGQFLVGEHDFSSFRAAGCQSKTPVKNIEYLHVIRLG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I+IRV A +FL+ +R+ VG L VG G + + + L+A+ R+ P P GLY Sbjct: 179 RFIKIRVKADAFLYHMVRNIVGCLVYVGTGARSVDWMGEVLEAKSRQAAAPTFYPTGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|291460751|ref|ZP_06600141.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291416710|gb|EFE90429.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 266 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + I Y+G+ Y GWQ Q+ S+I+G + +A+ + GE + + GA RTD+GVHA + Sbjct: 1 MRRIRLDIAYDGTNYHGWQYQEGQSTIEGELRRALSELLPGEEIGLTGASRTDAGVHARQ 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A FD ALN L + I IL + FH RFS ++ Y YRI Sbjct: 61 NTACFDTKSRIPGANFSMALNCRL--PEDIRILRSMEAGEDFHPRFSPHKKVYEYRIGRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----IRTIDHF 175 + P L++ + L MR+AA+ LVG HDF +F + Q +RT+ Sbjct: 119 RIPDPLKRLYCFPFSFPLSLSEMRLAAEELVGEHDFRSFANPDSQVLMHGGAAVRTLYEL 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G + + FL+ IR G+L +G G+ + ++ + L A+DR+ G AP Sbjct: 179 SLREEGEELILHFEGSGFLYHMIRILTGTLLEIGSGRRRAAEIPEILAARDRRRAGFTAP 238 Query: 236 PEGLYFDSVEY 246 +GL ++ Y Sbjct: 239 AKGLCLLALCY 249 >gi|325955163|ref|YP_004238823.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] gi|323437781|gb|ADX68245.1| tRNA pseudouridine synthase A [Weeksella virosa DSM 16922] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG YFGWQRQ S+Q IE + + E + + GAGRTD+GVHA + Sbjct: 1 MRYFLELAYNGQNYFGWQRQPKQLSVQEKIEFCLSTLLREEINIVGAGRTDTGVHAKKMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + LN++L + IS+ ++ V + HARF A++R+Y Y I T++ Sbjct: 61 AHFDFDGS-LTDDFIRRLNSFL--PEDISVTSIHCVAPEAHARFDAVKRTYHYHIYTQKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 +W I K LD E M AA++L+ + DF +F +H + I T+ + Sbjct: 118 --PFTTTTSWQIRKPLDIEKMNEAAKYLIKKADFGSFAKLHTDVKTNICTVYRAEWIQIE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG GK T +D + +DRK APP+GL+ Sbjct: 176 KDFFCFEITADRFLRNMVRAIVGTLVEVGLGKITPSDFNNIIDKKDRKFAAASAPPQGLF 235 Query: 241 FDSVEY 246 V Y Sbjct: 236 LVEVLY 241 >gi|51245176|ref|YP_065060.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901428|sp|Q6ANM1|TRUA1_DESPS RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|50876213|emb|CAG36053.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 251 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M C++I ++G+ Y GWQ+Q + ++IQG IE + ++ + + +HGAGRTD+GVHA Sbjct: 1 MRNICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHF +ALN L I IL + + FHARF+A + Y YR+ T Sbjct: 61 TAHFHTDTRLTCNDFQRALNRML--PGAIRILQVREMADDFHARFAATGKEYHYRLFTGG 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTIDH 174 ++ K +D E M+ Q ++G HDF++F + + + RTI Sbjct: 119 VIPPQKRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTILE 178 Query: 175 FDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 F + FL +R+ VGS+ VG GK + E+AL+ +DR GP Sbjct: 179 ARYEQFEEDSWHFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDRNAAGPT 238 Query: 234 APPEGLYFDSVEY 246 AP GL V Y Sbjct: 239 APAHGLKLFQVFY 251 >gi|195941752|ref|ZP_03087134.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 80a] gi|216264809|ref|ZP_03436801.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224533912|ref|ZP_03674497.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] gi|215981282|gb|EEC22089.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a] gi|224512915|gb|EEF83281.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a] Length = 246 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKFKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|169830000|ref|YP_001700158.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] gi|238688163|sp|B1HMV0|TRUA_LYSSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|168994488|gb|ACA42028.1| tRNA pseudouridine synthase A [Lysinibacillus sphaericus C3-41] Length = 246 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKIIISYDGTHFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I +L++ V FHAR+S + Y Y Sbjct: 61 QTLHFDTPLAIPTDKYRKALNVQL--PRDIRVLSVEEVAHDFHARYSVTGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 119 PIQNPFRRHYTVDTNGVKPDVVAMQKAAQAIIGTHDFSCFCAANTSVQDKVRTVTSLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG + T ++ + ++DR + G APP+G Sbjct: 179 WHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIDRRTIENIALVVASEDRDKAGKTAPPQG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEKVFY 246 >gi|329965278|ref|ZP_08302208.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] gi|328523298|gb|EGF50398.1| tRNA pseudouridine synthase A [Bacteroides fluxus YIT 12057] Length = 288 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 113/246 (45%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG+S+Q + KA+ + V V GAGRTD+GVHA V Sbjct: 30 QRYFIYLAYDGTAYHGWQIQPNGASVQECLMKALSTLLRREVEVVGAGRTDAGVHASLMV 89 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + LN L IS+ +L V + HARF A R Y Y + T + Sbjct: 90 AHFDSETPLDVTFMADKLNRLL--PPDISVYSLRAVKPEAHARFDATARMYKYYVTTAKV 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSF 180 + + ++ D E M AA+ L DFT+F +H + R + Sbjct: 148 --PFNRRYRCRLFQTPDFERMNEAAKTLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQLD 205 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 V A FL +R+ VG+L VG GK T + ++ +DR G P L+ Sbjct: 206 EVTWVFTVQADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQKDRCRAGTSVPGNALF 265 Query: 241 FDSVEY 246 V Y Sbjct: 266 LVDVAY 271 >gi|171321983|ref|ZP_02910866.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] gi|171092713|gb|EDT37998.1| tRNA pseudouridine synthase A [Burkholderia ambifaria MEX-5] Length = 270 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQAQPHGKTVQDALERALGEFACVPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L T+S+ + FHARF+A R+Y Y + Sbjct: 61 VHFDTDLDRTDFSWVRGTNAFL--PSTVSVQWAKPMADTFHARFAAFERTYYYVLYVHPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + GRA I LD + MR AA HL+G HDF++FRS CQ+ +P++ + DV G Sbjct: 119 RSPMLAGRAGWIHTPLDDDAMRAAAAHLIGEHDFSSFRSSECQSKTPVKHLYQIDVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I R A +FLH +R+ +G L VG G++ + L L +DR P +GLY Sbjct: 179 HFIHFRFRANAFLHHMVRNLMGCLVAVGRGRYPADWLADVLAGRDRNLAAPTFMADGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 AHVGY 243 >gi|313672355|ref|YP_004050466.1| tRNA pseudouridine synthase a [Calditerrivibrio nitroreducens DSM 19672] gi|312939111|gb|ADR18303.1| tRNA pseudouridine synthase A [Calditerrivibrio nitroreducens DSM 19672] Length = 248 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 129/242 (53%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +EY+G+ + GWQ QK ++Q IE A+ + + + + G+GRTD+GVHAL QV +F Sbjct: 9 KCTVEYDGTEFHGWQFQKGLVTVQSEIEAALSKIYKKQIHIIGSGRTDAGVHALAQVFNF 68 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + L LN+ L S I + VD FHA+ SA ++YLY+I+ + P A Sbjct: 69 RAEKYIESEPLNLGLNSLLPRSIIIKK--VEDVDVNFHAQKSAKSKTYLYKILNSELPSA 126 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + R W + S+D E VG DF+ ++ + +RTI+ +V ++I Sbjct: 127 FLRNRVWWVRNSIDIEIFSEILSQFVGTFDFSAMCTMKSLKENSVRTINFINVYKTEHII 186 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FLH +R+ +G+ + K + + + ++++DRK+ GP APP+GLY V Sbjct: 187 NIEINANGFLHNMVRNIIGTAFFIYRKKLHPSTVMEIIESRDRKKGGPTAPPQGLYLKEV 246 Query: 245 EY 246 Y Sbjct: 247 FY 248 >gi|316932092|ref|YP_004107074.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] gi|315599806|gb|ADU42341.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris DX-1] Length = 245 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 169/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPKLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH ++ + + L ALNA+L+ + +++L IV + F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVEIAKPFRADKLRDALNAHLR-PNPVAVLAAEIVPETFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDIGKVWRVPKPLDSDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVIRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIVTNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARKRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|329900760|ref|ZP_08272580.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] gi|327549402|gb|EGF33969.1| tRNA pseudouridine synthase A [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q +G+++Q +++A+F T + H AGRTD+GVHA+ QV Sbjct: 4 KRLVLGVQYDGTPWHGWQTQLSGNTVQDRLQQALFKFTQSDITTHCAGRTDTGVHAIEQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD--KQFHARFSAIRRSYLYRIITR 119 HFD + + LN +L S + ++ +D +FHARFSA R+Y Y + Sbjct: 64 VHFDTPLDRPISSWVRGLNTHLPPSIAVRWATVARLDPQHEFHARFSARSRTYHYLLYNN 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L +A + + LD + MR AAQ L+G HDFT FRS CQA SP++ + + Sbjct: 124 PVRSPLWNDKAGWVFRPLDLDRMREAAQSLIGTHDFTAFRSADCQAKSPVKMMHEIAITR 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I++ A +FLH +R+ VGSL VG G+ L + + +DR P P+GL Sbjct: 184 RDDLIVIKLHANAFLHHMVRNLVGSLIYVGTGRQPVDWLSELILQKDRHLAAPTFSPDGL 243 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 244 YLAKIDY 250 >gi|163851061|ref|YP_001639104.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] gi|238687375|sp|A9W377|TRUA_METEP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163662666|gb|ABY30033.1| tRNA pseudouridine synthase A [Methylobacterium extorquens PA1] Length = 250 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 109/250 (43%), Positives = 154/250 (61%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G+ + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGAPFRGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W + ALNA L+ ++IL+ +V ++F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLAKDWRTDTVRDALNARLR-PQPVAILSAEVVPQEFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 +P AL + W +P LD E M AAQ L+G HDF+ FR+ CQA SP+RT++ D Sbjct: 120 SPAALTRAHVWQVPWPLDAELMHRAAQRLLGHHDFSAFRAAECQAKSPMRTLEQLDVTRV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCKRLSADDVAEILATGAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|291530837|emb|CBK96422.1| pseudouridylate synthase I [Eubacterium siraeum 70/3] Length = 250 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVN 178 A P D E MR AA+ +VG HDF +F + +RT+ DV Sbjct: 119 VRDVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI+V FLH +R VG+L + +GK T D+ AL DR+ G PP G Sbjct: 179 QTGDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLNKVFY 246 >gi|218249502|ref|YP_002374546.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224532546|ref|ZP_03673169.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226322073|ref|ZP_03797598.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] gi|226708642|sp|B7J0V1|TRUA_BORBZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1665842|emb|CAA70351.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|2911585|emb|CAA11967.1| pseudouridylate synthase I [Borrelia burgdorferi] gi|218164690|gb|ACK74751.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7] gi|224512489|gb|EEF82867.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23] gi|226232663|gb|EEH31417.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26] Length = 246 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIMGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 + V Y Sbjct: 240 LERVYY 245 >gi|332881976|ref|ZP_08449617.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680102|gb|EGJ53058.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 250 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG Y GWQ Q ++QG ++ A+ + E + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIEFSYNGKNYHGWQLQPKAITVQGVLQNALTTILREEISVIGAGRTDSGVHALQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD RE + L + LNA+L I++ ++ V HARF A++R+Y Y I ++ Sbjct: 61 AHFDTERE-LSDDLVRKLNAFL--PYDIAVHSICAVKPDAHARFDALKRTYQYHISIEKS 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + L+ + M AAQ L DF F H + I G Sbjct: 118 --PFRYNYSMPLTLPLNIDVMNEAAQILFDYTDFQCFSKTHTDVKTFNCKIYEAHWAVVG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG K + T E + ++ R + G P GL+ Sbjct: 176 GELVFTITADRFLRNMVRAIVGTLINVGLQKLSLTGFEDIIISKSRSKAGASVPACGLFL 235 Query: 242 DSVEY 246 V Y Sbjct: 236 TQVTY 240 >gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325] Length = 262 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 129/248 (52%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +I Y+GS Y G+Q Q N +++Q IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLICRYDGSRYHGFQIQPNNNTVQEEIEKSLRKIHKKNVRIYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KA+NA I I I++ +V+ +FH R+++I+++Y Y++ + Sbjct: 61 LHFDTDLNIPTDGWVKAINAM--IPKDIRIVSAKVVNDEFHVRYNSIKKTYSYKLYLGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---N 178 + + + + A ++ +G HDF++F S + +RTI F + N Sbjct: 119 IDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSFCSKNTSVEDKVRTIYSFKMDRDN 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N+I + FL+ +R +G+++ V GK+ +++ L ++R GP A G Sbjct: 179 QNDNIINFEITGNGFLYNMVRIIIGTVQDVAAGKYEPEYIQEILAKKERSFSGPKADASG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLKEVLY 246 >gi|332638011|ref|ZP_08416874.1| tRNA pseudouridine synthase A [Weissella cibaria KACC 11862] Length = 249 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY I Y+G+ ++GWQ Q ++Q +EK + + + + V G+GRTD+ VHA Sbjct: 1 MPRYKATISYDGTEFYGWQVQPGKRTVQLEMEKVVNKMAKDPADHIRVQGSGRTDARVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFDL + + K L+ L I I ++ VD+ FHA+FSA ++Y YR+ Sbjct: 61 QGQVVHFDLPFDIPNEAVRKGLSTML--PYDIGIKSVEKVDESFHAQFSAHNKTYRYRLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + ++ + +D M+ A VG HD+ +F + Q + +RT+ + Sbjct: 119 TTEFIDPFKRNYTGHWHRRIDTSLMQQAIGDYVGEHDWLSFVASGFQQKTTVRTVYSAKM 178 Query: 178 NSFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 EI FL+ QIR VG L +G+G D+++ +DR++ AP Sbjct: 179 WEKPEEDEIWFEFTGNGFLYNQIRIMVGVLLEIGNGSRPVDDIQRLFAVKDRQQARFTAP 238 Query: 236 PEGLYFDSVEY 246 +GLY SV+Y Sbjct: 239 AQGLYLMSVDY 249 >gi|284047733|ref|YP_003398072.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] gi|283951954|gb|ADB46757.1| tRNA pseudouridine synthase A [Acidaminococcus fermentans DSM 20731] Length = 245 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 135/247 (54%), Gaps = 3/247 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ Y G+QRQKNG +Q +EKA+ V E +++ AGRTD+GVHAL Sbjct: 1 MIRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F P +AL +L I+I +V FHARF A+ ++Y Y+I Sbjct: 61 QVISFATSSRIPPENYRRALEPHL--PPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ W I + LD E M AA L+G+HDFT+F++ Q +SP+RT+ Sbjct: 119 PLPDPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GNL + FL+ +R+ VG L VG G+W D + + A++RK+ G AP +GL Sbjct: 179 DGNLYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGL 238 Query: 240 YFDSVEY 246 Y V Y Sbjct: 239 YLMHVSY 245 >gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1] Length = 332 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY G+ Y GWQRQ S+Q ++E+A+ V E + V AGRTD+GVH QV Sbjct: 66 RIALGVEYKGARYRGWQRQASGVPSVQQALEQALSKVANEPISVVCAGRTDAGVHGCGQV 125 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS++ + FHARF A R Y Y I Sbjct: 126 VHFDTRAVRDERAWTMGTNFNL--PHDISVVWSRPMPADFHARFKACARRYRYVIYNDPI 183 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD + M AAQ L+G HDF+ FR+ CQA SPI+ I H V G Sbjct: 184 RPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFRASQCQAKSPIKHIYHLRVTRHG 243 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + V A +FLH +R+ G L +G G+ + L+ ++R+E G A P GLY Sbjct: 244 QMIVLDVRATAFLHHMVRNIAGVLMAIGAGERPVAWAREVLEGRNRREGGVTAHPYGLYL 303 Query: 242 DSVEY 246 VEY Sbjct: 304 VQVEY 308 >gi|229823506|ref|ZP_04449575.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] gi|229786950|gb|EEP23064.1| hypothetical protein GCWU000282_00804 [Catonella morbi ATCC 51271] Length = 257 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 127/252 (50%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----VVVHGAGRTDSGVH 56 M RY + + Y+GS + G+Q Q NG SIQ +++ A+ + + +GRTDSGVH Sbjct: 1 MPRYAIQLAYDGSRFVGYQVQPNGPSIQANLDAALIKMAKCPEGVTIPTVASGRTDSGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFD + +ALNA L I ++ ++ V FHAR+ AI + Y YR+ Sbjct: 61 ALGQVVHFDYPAPMPQQAMQRALNALL--DPAIKVVAVARVADDFHARYHAIGKEYRYRV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--H 174 ++ + P D + + A + +VG HDFT+F S +RT+ Sbjct: 119 DIGAYANPFKRLYSLHHPYRYDLDRINQALEAVVGTHDFTSFCSTKTDKEDKVRTVHLAR 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + FL+ IR VG+ +GDG +LE+ +Q Q+RKE GP A Sbjct: 179 VWEDRDQQELVFQFRGTGFLYNMIRILVGTSLQIGDGLRPVNELERLIQVQNRKEAGPTA 238 Query: 235 PPEGLYFDSVEY 246 PP+GLY V Y Sbjct: 239 PPQGLYLHQVFY 250 >gi|304311263|ref|YP_003810861.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] gi|301796996|emb|CBL45209.1| tRNA pseudouridine synthase A [gamma proteobacterium HdN1] Length = 265 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + IEY+GS Y GWQRQ + ++Q +E A+ V V V GRTD+GVH Q Sbjct: 1 MRIALGIEYDGSPYHGWQRQGHEPNTVQQILESALSQVADHPVTVICCGRTDAGVHGYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P NA L +IS+ V + FHARFSA R Y Y I Sbjct: 61 VVHFDTHAMRTPRAWIHGANAAL--PHSISVRWSQEVPEHFHARFSAYARRYCYVIYNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + LD M AQ LVG HDFT+FR++ CQA SPI+TI V Sbjct: 119 IRPALGMRHMTWQYRPLDERQMEEGAQALVGTHDFTSFRALGCQAKSPIKTIHSIRVERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I I V A ++LH +R+ G L VG GK S +++ L+ +DR G APP GLY Sbjct: 179 GAMIFISVHANAYLHHMVRNIAGVLMAVGTGKAASRWVKEVLELRDRSRGGVTAPPYGLY 238 Query: 241 FDSVEY 246 F +Y Sbjct: 239 FMEAQY 244 >gi|88860431|ref|ZP_01135069.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] gi|88817629|gb|EAR27446.1| tRNA pseudouridine synthase A [Pseudoalteromonas tunicata D2] Length = 262 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY+GS YFGWQRQ N S+Q +E+A+ + V V AGRTDSGVH QV Sbjct: 1 MRIALGIEYDGSNYFGWQRQNNVISVQQEVEQALSRICNHPVEVFCAGRTDSGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N+ L D +++ V FHARFSA R Y Y I+ + Sbjct: 61 VHFDTDANRDISAFYLGMNSVL--PDAVAVRWAQEVSLDFHARFSATARRYRYVILNQNN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K LD + M A +L+G +DFT+FR++HCQ+++P R I H V+ FG Sbjct: 119 RPGILKNGISHYHLPLDADAMNQACSYLLGENDFTSFRAVHCQSNTPFRNIMHLRVDRFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G GK+ ++ ++ L+ +DR + A GLY Sbjct: 179 DYVVIDIKANAFLHHMVRNITGCLIDIGIGKYPASWMKDVLELKDRTKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|269468479|gb|EEZ80140.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 247 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N L ++ V+ FHARF A R Y Y+I Sbjct: 61 VIHFETTAKREDKAWVLGGNVNL--PFDVNFKWAKQVNDDFHARFDAHARQYHYKIHNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ + Sbjct: 119 VRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFIRLTQS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN I + + A +FLH +R+ VG+L VG G+ S ++ L A+DRK+ G A P+GLY Sbjct: 179 GNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVKTVLDAKDRKQAGVTAEPQGLY 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FVKAFY 244 >gi|148379875|ref|YP_001254416.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 3502] gi|153930931|ref|YP_001384172.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|153935153|ref|YP_001387713.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] gi|148289359|emb|CAL83455.1| tRNA pseudouridine synthase [Clostridium botulinum A str. ATCC 3502] gi|152926975|gb|ABS32475.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. ATCC 19397] gi|152931067|gb|ABS36566.1| tRNA pseudouridine synthase A [Clostridium botulinum A str. Hall] Length = 246 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + ++I + FLH IR G+L +G S D++ L A+DR++ GP AP +GL Sbjct: 179 KDSYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|312796827|ref|YP_004029749.1| tRNA pseudouridine synthase A [Burkholderia rhizoxinica HKI 454] gi|312168602|emb|CBW75605.1| tRNA pseudouridine synthase A (EC 4.2.1.70) [Burkholderia rhizoxinica HKI 454] Length = 271 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + ++Y+G+ + GWQ Q +G+++Q +E+A+ + AGRTD+GVHAL QV Sbjct: 6 MRIALGLQYDGAAFCGWQAQPHGNTVQNVLERALEQFAQVPLPTVVAGRTDTGVHALGQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + + +NA+L ++S+ V FHARF+A R+Y Y + Sbjct: 66 VHFDTLLDRAAFSWVRGVNAFL--PPSVSVQWAKPVPPTFHARFAAFERTYFYVLYVHPV 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + RA + LD E MR AA +L+G HDF++FRS CQA +P++ + D+ G Sbjct: 124 RSPMLARRAGWVHTPLDVEAMREAAGYLIGEHDFSSFRSSDCQAKTPVKHLYAIDIVEHG 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +R A +FLH +R+ +G L VG + + + + L A++RK P P+GLY Sbjct: 184 PFVHLRFRANAFLHHMVRNIMGCLVSVGRHRHPACWMAEVLAARERKHAAPTFMPDGLYL 243 Query: 242 DSVEY 246 V Y Sbjct: 244 AQVGY 248 >gi|332365537|gb|EGJ43297.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1059] Length = 249 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVERVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|306829107|ref|ZP_07462297.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] gi|304428193|gb|EFM31283.1| tRNA pseudouridine synthase A [Streptococcus mitis ATCC 6249] Length = 249 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQAITVHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++ + IV FH R++ + Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVILIEIVADDFHCRYAKHSKIYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 + + + A P LD E M+IA + L G HDFT F + + +RTI V Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQIAIKKLEGTHDFTGFTASGTSVENKVRTITEASLTV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A P Sbjct: 179 DETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMLVEQIDLILEKKDRQLAGPTAAPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|268318033|ref|YP_003291752.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] gi|262335567|gb|ACY49364.1| tRNA pseudouridine synthase A [Rhodothermus marinus DSM 4252] Length = 252 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 134/248 (54%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y ++IEY+G+ + GWQ Q+NG SIQ ++E+A+ +V E V V G+GRTD+GVHA Q Sbjct: 1 MPTYRLLIEYDGTDFSGWQIQRNGPSIQAALEEALAVVLRERVRVVGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF R P L +LN L S I ++L+ FHAR+ A R Y Y + T Sbjct: 61 VAHFRTDRPVDPERLQGSLNGLLPPSIAIRSVSLA--PDDFHARYDARWRRYHYYVAT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVN 178 P ALE+ W + + D E M AA L+G HDFTTF + T+ + + Sbjct: 117 VPCALERHLRWYLRPAPDFERMNRAACDLLGTHDFTTFCRTQTATRNRTCTVYLARWVPD 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +VA FLH +R+ VG+L +G G+ L + L A+DR+ GP AP G Sbjct: 177 PRPGDWHFEIVADRFLHGMVRAIVGTLIEIGRGQRDIAALPELLAARDRRLAGPAAPAHG 236 Query: 239 LYFDSVEY 246 L ++V Y Sbjct: 237 LVLEAVGY 244 >gi|15644322|ref|NP_229374.1| tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8] gi|8134772|sp|Q9X1R0|TRUA_THEMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4982143|gb|AAD36641.1|AE001802_10 pseudouridylate synthase I [Thermotoga maritima MSB8] Length = 245 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDTGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + + A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIRNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR A ++L G HDFT+F++ + + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAVKYLEGTHDFTSFKTGSDERDPVRTIYRIRILRL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP GL Sbjct: 179 KNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHGL 238 Query: 240 YFDSV 244 YF V Sbjct: 239 YFYKV 243 >gi|311745793|ref|ZP_07719578.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|126575993|gb|EAZ80271.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 252 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y G+ Y GWQ Q N S+Q IE A+ + V G+GRTD+GVHA QV Sbjct: 5 KRYFLELSYKGTKYHGWQIQNNAFSVQECIESALSTYFRSPITVMGSGRTDTGVHAKMQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFDL + KA+N L ISI+++ V HARF A+ RSY+YRII Sbjct: 65 CHFDLADDIDYGKFLKAINGIL--PIDISIMSIRQVTPNAHARFDAVSRSYVYRII--FQ 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G AW D E M +AA+ L+ DF F +H + I Sbjct: 121 KNPFLDGLAWHSYFIPDLEKMNLAAETLLKHDDFECFSKVHTEVKHFRCDIKSCSWEQKD 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK D+EK + ++DR G AP GL+ Sbjct: 181 GELLFHITANRFLRGMVRAIVGTLMEVGLGKKAPEDMEKIILSKDRSNAGKSAPARGLFL 240 Query: 242 DSVEY 246 + Y Sbjct: 241 SRIIY 245 >gi|281412654|ref|YP_003346733.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] gi|281373757|gb|ADA67319.1| tRNA pseudouridine synthase A [Thermotoga naphthophila RKU-10] Length = 245 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVPVNFHPRFDVTKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F++ + + Sbjct: 119 RQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSFKTGSDERDPVRTIYRIRILRL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP GL Sbjct: 179 KNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHGL 238 Query: 240 YFDSV 244 YF V Sbjct: 239 YFYKV 243 >gi|303230129|ref|ZP_07316898.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] gi|302515190|gb|EFL57163.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-134-V-Col7a] Length = 261 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA Sbjct: 1 MRNIRLIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A A+L I + + + R + + Y+Y I Sbjct: 61 FQVCAFQTSGSIPVKNIPRATIAHL--PKDIVVTEAVEIPLDWKPRHNIFGKEYIYSIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ + + W + K LD E MR A + L G HDF+T + + P++TI + Sbjct: 119 REIADPMGQRYHWHVKKPLDVEAMRQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I+I VV FL+ +R+ G L +G G+ + + + L A+DRK G AP +G Sbjct: 179 EKAGRIDISVVGDGFLYHMVRNIAGLLVDIGLGRKSVARIPELLAAKDRKRIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LVLEEIFFT 247 >gi|293572050|ref|ZP_06683062.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] gi|291607912|gb|EFF37222.1| tRNA pseudouridine synthase A [Enterococcus faecium E980] Length = 246 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F E + +N YL I I + + ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNSEIGLAEMIDFMNRYL--PRDIVIKRIEEMPERFHARYNAVGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ P+ LD + + A + L+G HDF F ++ S +RTID + Sbjct: 119 VIPSAFERNHSFYFPQELDMDKLNAACEKLMGTHDFIGFSALKKSKKSTVRTIDELSIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ V FL+ +R +G+L +G +++ +++ R+ G P +GL Sbjct: 179 KGEMLHFTFVGDGFLYKMVRIIMGTLLEIGTSAMPIETIDEIFESKVRQHAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|324992392|gb|EGC24313.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK405] gi|324996086|gb|EGC27997.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK678] gi|327460621|gb|EGF06956.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1] gi|327472350|gb|EGF17781.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK408] gi|327488890|gb|EGF20688.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK1058] Length = 249 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQPHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I +++ V FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFISVEQVSDDFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELGLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMLVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|281425834|ref|ZP_06256747.1| tRNA pseudouridine synthase A [Prevotella oris F0302] gi|281400095|gb|EFB30926.1| tRNA pseudouridine synthase A [Prevotella oris F0302] Length = 243 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+GS Y GWQ Q NG S+Q +++A+ + + + + GAGRTD+GVHA Sbjct: 1 MQRYFIYLSYDGSAYHGWQIQPNGISVQEKLQEALSKLLRQEIEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + L LN L I+I + V+ HARFSA R+Y Y I T+ Sbjct: 61 VAHFDFPKSIEEEQLRYRLNRLL--PRDITINKVIPVEADMHARFSAKWRTYRYYIHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++ P LD + M A+ L DF F S + TI Sbjct: 118 -KDAFLRHYSYESPYKLDYQLMNQGAELLKSHTDFAAFCKTGADNKSTLCTIRESKWVQT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L L+G + DL+ LQ DR G P L Sbjct: 177 SAISWYFEITANRFLRNMVRATVGTLFLLGRHHISLDDLDYILQEGDRSNAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|303231239|ref|ZP_07317977.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] gi|302514146|gb|EFL56150.1| tRNA pseudouridine synthase A [Veillonella atypica ACS-049-V-Sch6] Length = 261 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 124/249 (49%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q G ++QG++EKA+ ++ E + ++GA RTD+GVHA Sbjct: 1 MRNIRLIVAYDGTDLAGYQKQPADKGITVQGALEKALSIICAEPIQIYGASRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A A+L I + + + R + + Y+Y I Sbjct: 61 FQVCAFQTSGSIPVENIPRATIAHL--PKDIVVTEAIEIPLDWKPRHNIFGKEYIYSIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R+ + + W + K LD E M A + L G HDF+T + + P++TI + Sbjct: 119 REIADPMGQRYHWHVKKPLDVEAMHQAGKALEGTHDFSTLKGANTTPVDPVKTIYAIGIK 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I+I VV FL+ +R+ G L VG G+ + + + L A+DRK G AP +G Sbjct: 179 EKAGRIDISVVGDGFLYHMVRNIAGLLVDVGLGRKSVAQIPELLAAKDRKRIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LVLEEIFFT 247 >gi|258509450|ref|YP_003172201.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|257149377|emb|CAR88350.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus GG] gi|259650729|dbj|BAI42891.1| tRNA pseudouridine synthase [Lactobacillus rhamnosus GG] Length = 247 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSL--MPLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + P LD + + +A + LVG HDFT+F + +RTI + Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAANELVFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|224024234|ref|ZP_03642600.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] gi|224017456|gb|EEF75468.1| hypothetical protein BACCOPRO_00957 [Bacteroides coprophilus DSM 18228] Length = 249 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + ++G+ Y GWQ Q NG+S+Q ++ KA+ + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLSFDGTNYHGWQIQPNGASVQETLMKALSTFLRREIEVVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD E ++ LN L I++ + V + HARF A R+Y Y I TR Sbjct: 61 VAHFDFDTELDGEVVTDKLNRLL--PPDIAVYGVRRVKPEAHARFDATSRTYKYYIHTR- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNS 179 +G +W I + LD E M AAQ L DFT+F +H + R + + Sbjct: 118 -KDPFRRGYSWRIFQPLDFERMNEAAQTLFDYTDFTSFSKLHTDVKTNNCRIMLARWEQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ ++R G P L Sbjct: 177 GDGEWVFTIRADRFLRNMVRAVVGTLVEVGRGKLTVDGFRRVIEEKNRCSAGTSVPGHAL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLTDVSY 243 >gi|292492023|ref|YP_003527462.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] gi|291580618|gb|ADE15075.1| tRNA pseudouridine synthase A [Nitrosococcus halophilus Nc4] Length = 259 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R +EY GS + GWQ Q+ ++Q ++E+A+ V + + V AGRTD+GVHA QV Sbjct: 1 MRIAFGVEYEGSSFCGWQSQRGVPTVQATLEEAVSKVANQPITVITAGRTDAGVHAAAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + N L + +L VD+ FHARFSA+ R Y Y I+ R+ Sbjct: 61 VHFDTTASRLEHNWIFGCNMNL--PPEVVVLWAQPVDETFHARFSAVARHYRYVILNRRV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ R L MR HL+G HDF++FR+ CQA SPIR + +V Sbjct: 119 RPAIANRRVTWYCHPLSVSRMREGGAHLIGEHDFSSFRAKACQAKSPIRNVHRLEVRRQE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L VG G+ +E+ LQA+ R A P+GLY Sbjct: 179 DFVVIDISANAFLHHMVRNIAGVLMAVGKGEQPPCWVEEVLQARCRALGSVTARPDGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 MGVDY 243 >gi|296111462|ref|YP_003621844.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] gi|295832994|gb|ADG40875.1| tRNA pseudouridine synthase A [Leuconostoc kimchii IMSNU 11154] Length = 256 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 132/257 (51%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTG---EIVVVHGAGRTD 52 M RY I+ Y+GSG+FG+Q Q KNG ++QG + KA+ + E + V GA RTD Sbjct: 1 MPRYKAIVSYDGSGFFGFQVQTKNGIERQRTVQGELTKAVNQMAKNPTEPIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + + K LN L + I + V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINENGVRKGLNTLL--PRDMLIKQVDKVTPDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD E ++ A L+G HDF +F + Q ++ IRTI Sbjct: 119 IYRVSTQDFTDPFKRQYTGHFQWHLDIERIKSALPDLLGEHDFASFAASGNQTATTIRTI 178 Query: 173 DHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV + E +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADVTIKPDDQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDILRLITVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEYS 247 AP GLY D + Y+ Sbjct: 239 RFTAPASGLYLDQIYYN 255 >gi|319901295|ref|YP_004161023.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] gi|319416326|gb|ADV43437.1| tRNA pseudouridine synthase A [Bacteroides helcogenes P 36-108] Length = 250 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 114/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + KA+ + V V GAGRTD+GVHA Sbjct: 1 MQRYFIYLAYDGTAYHGWQIQPNGESVQECLMKALATLLRCDVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + LN L IS+ L V HARF A R Y Y + T Sbjct: 61 VAHFDSAAPLDAAFMVDKLNRLL--PPDISVYRLRAVKSDAHARFDATTRMYKYYVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNS 179 A + ++ + ++ D E M AAQ L DFT+F +H + I H Sbjct: 117 AKIPFDRWYRCRLFQTPDFERMNEAAQTLYDYTDFTSFSKLHTDVKTNNCKIMHAVWTQQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ QDR + G P L Sbjct: 177 DEVTWVFTIKADRFLRNMVRAIVGTLLEVGRGKLTVEGFRRVIEQQDRCQAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVSY 243 >gi|228473082|ref|ZP_04057839.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] gi|228275664|gb|EEK14441.1| tRNA pseudouridine synthase A [Capnocytophaga gingivalis ATCC 33624] Length = 240 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +E+A+ ++ + + + GAGRTD+GVHA Sbjct: 1 MRYFIQLSYNGKNYCGWQRQPHSPSVQEELEEAMSMLLKKEIALVGAGRTDTGVHARDYY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD ++ K LN++L I+I + V HARF A R+Y Y I + Sbjct: 61 AHFDSDSSLPDRLVEK-LNSFL--PKEIAIKQIFPVKNDAHARFDACSRTYQYFIALEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ I LD M A + L+ DF F ++ + + G Sbjct: 118 PFLYEQSY--YIHFPLDLSLMNKAGEILLQHTDFQCFSKVNTDVKTYNCQLKEAYWRKEG 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 NL+ R+ A FL +R+ VG++ +G G+ + DL++ L ++DR + G P L+ Sbjct: 176 NLLIFRITADRFLRNMVRAIVGTMIEIGRGRLSLEDLQQILLSKDRSKAGYSVPGHALFL 235 Query: 242 DSVEY 246 + + Y Sbjct: 236 EEIIY 240 >gi|254480499|ref|ZP_05093746.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] gi|214039082|gb|EEB79742.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2148] Length = 277 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R IEYNG+ Y GWQ Q N ++Q +E A+ V + VH AGRTD+GVH Q Sbjct: 11 RIACRIEYNGARYNGWQSQPHLNVLTVQQELESALSSVADHPLRVHCAGRTDTGVHGHCQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD P NA ++ + + ++V + FHARF A+ R Y Y I Sbjct: 71 IVHFDAPAARAPKAWVLGANA--SMAKDVRVHWATVVPESFHARFCAVARRYRYVIANTL 128 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ G+ LD M AAQ L+G DF+ FR+ CQ++SP+R + V Sbjct: 129 VRPAVLVGQVSWYRYPLDAAIMDKAAQSLLGEQDFSAFRAAACQSNSPMRNVHSVAVRRI 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + + A +FLH +R+ VGSL VG G+ + + L A+DR + A P GLY Sbjct: 189 GDLVVVDIQANAFLHHMVRNIVGSLLAVGSGRKPEAWIGQLLAARDRTQAADTAAPHGLY 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LADVLY 254 >gi|283853830|ref|ZP_06371050.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] gi|283570781|gb|EFC18821.1| tRNA pseudouridine synthase A [Desulfovibrio sp. FW1012B] Length = 270 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 81/252 (32%), Positives = 114/252 (45%), Gaps = 8/252 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE V + GAGRTDSGVHA+ Sbjct: 1 MPRLRLTLAYDGTAFAGWQLQAPGRGRTVQGCLEEALATLCGEPVRIFGAGRTDSGVHAM 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + KALNA L +S+ +V FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEGRAAIPWQKALNALL--PADMSVAGAELVPDGFHARFCATGKVYHYTLWT 118 Query: 119 RQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 LD M A G HDF F++ + R + Sbjct: 119 EPGHVLPWRRPYVWDVGRYGRLDVAAMDACAACFAGFHDFAAFQNAGSDVKTTTRLVHGV 178 Query: 176 DV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G + R A FL +R+ +G+L VG GK + D+ L R+ A Sbjct: 179 TRLATGGPEMVWRFHAEGFLKQMVRNLMGALVAVGRGKVSPEDIRSVLTQGQRRLAPQTA 238 Query: 235 PPEGLYFDSVEY 246 P GL VEY Sbjct: 239 PASGLCLVVVEY 250 >gi|258540648|ref|YP_003175147.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] gi|257152324|emb|CAR91296.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus Lc 705] Length = 247 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 120/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSL--MPLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPATNELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|298373324|ref|ZP_06983313.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] gi|298274376|gb|EFI15928.1| tRNA pseudouridine synthase A [Bacteroidetes oral taxon 274 str. F0058] Length = 247 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 134/245 (54%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG+ Y GWQ Q N ++Q ++ +A+ +V G V + GAGRTD+GVHA Sbjct: 1 MRYFIYIAYNGTNYHGWQIQPNAVTVQETVGQAMSVVLGSNVEITGAGRTDTGVHARTMT 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFDL + L K LN+ L I++ + V + HARFSA+ R+Y Y + + Sbjct: 61 AHFDLTKRIDEANLVKRLNSLL--PADIAVYKIVEVIPEAHARFSAMSRTYEYLLYLDKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +G A+ + LD E M IAA + DFT+F +H + T+ + + Sbjct: 119 --PFLRGLAYRHYRDLDFEKMNIAANKMRDYTDFTSFAKLHTDTRTNNCTVSKAEWHKQD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N+ +VA FL +R+ VG+L LVG+G+ T D + ++A+DR++ G +GLY Sbjct: 177 NIWIFTIVADRFLRDMVRATVGTLILVGEGRITVDDFCRIIEAKDRQKAGQSIDAQGLYL 236 Query: 242 DSVEY 246 ++Y Sbjct: 237 TDIQY 241 >gi|218262724|ref|ZP_03477082.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] gi|218223213|gb|EEC95863.1| hypothetical protein PRABACTJOHN_02761 [Parabacteroides johnsonii DSM 18315] Length = 292 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 119/245 (48%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ + LN L I++ + V HARF A R+Y Y I TR+ Sbjct: 106 HFDWKEPIDDLVFLVEKLNRLL--PKDIAVYRIVPVRTDAHARFDATSRTYKYYITTRKD 163 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E IP LD E M A L DFT+F +H + I G Sbjct: 164 PFNYELVY--KIPGKLDFEAMNKACPVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEKDG 221 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 222 DVWFFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYL 281 Query: 242 DSVEY 246 V Y Sbjct: 282 VDVTY 286 >gi|254447334|ref|ZP_05060801.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] gi|198263473|gb|EDY87751.1| tRNA pseudouridine synthase A [gamma proteobacterium HTCC5015] Length = 261 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 102/245 (41%), Positives = 140/245 (57%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G+ Y GWQRQ NG S+Q +E+++ V V V AGRTD+GVHA +QV Sbjct: 1 MKIALGVEYDGTAYHGWQRQNNGISVQQVLEESLSKVANHGVQVQCAGRTDTGVHATQQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + NA L +S+ V FHARFSA R Y Y I++R + Sbjct: 61 VHFESSAQRSIRNWILGANANL--PFDVSVRWAKQVSDDFHARFSAQGRRYRYLILSRYS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL RA K LD E M+ AAQHLVGRHDF+++R++HCQA SP+RT+ +V G Sbjct: 119 RSALWGRRATWTHKPLDLEVMQQAAQHLVGRHDFSSYRAVHCQAKSPVRTLHSLEVGRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I V FLH +R+ G L +G G+ + L+ +DR+ G APP GLYF Sbjct: 179 DFIYIDVHGDGFLHHMVRNIAGVLMAIGAGEAVPDWSREVLEHRDRRLGGVTAPPWGLYF 238 Query: 242 DSVEY 246 EY Sbjct: 239 VHAEY 243 >gi|312962053|ref|ZP_07776550.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] gi|311283863|gb|EFQ62447.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6] Length = 284 Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVPTVQETLEKALSKVADSSVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVDWAREVLESRIRRTGGVTAHPFGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VDVEY 260 >gi|170289026|ref|YP_001739264.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] gi|238688847|sp|B1LB83|TRUA_THESQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170176529|gb|ACB09581.1| tRNA pseudouridine synthase A [Thermotoga sp. RQ2] Length = 245 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 3/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +IEY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MKRVAAVIEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V K FH RF +R Y Y I+T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKEVFEVSKNFHPRFDVKKRIYHYFILTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W P LD + MR AA++L G HDFT+F++ + + Sbjct: 119 KQKNVFLRKYVWWFPYELDLDAMRKAAKYLEGTHDFTSFKTGSDERDPVRTIYRIRILRL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +L+ IRV RSFL +R+ V +L VG +W +++ L+A+DR AP GL Sbjct: 179 KNDLVLIRVEGRSFLRRMVRNIVAALVKVGLKQWEPEKMKEVLEARDRSAAAGTAPAHGL 238 Query: 240 YFDSV 244 YF V Sbjct: 239 YFYKV 243 >gi|255067233|ref|ZP_05319088.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] gi|255048601|gb|EET44065.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256] Length = 272 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q +E A+ + GE + AGRTD+GVHA Q Sbjct: 14 QRWALTLSYDGSRFYGWQKQADGLPTVQTVLESALSQIAGETIRTIVAGRTDTGVHATAQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NAYL + +++L V FHARF A R Y Y + + Sbjct: 74 VVHFDTQVARPEQAWVRGVNAYL--PEGVAVLFAQQVAPHFHARFDAYGRRYRYLLESSP 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +G+ LD E M+ AA L G HDF++FR++ CQA SP++T+ ++ Sbjct: 132 VRSPILQGKVGWTHLKLDPEKMQQAALLLEGEHDFSSFRAVECQAKSPVKTLYSAKISGT 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +++ + +FLH +R+ +G+L VG G+ + + + ++ + R + P P+GLY Sbjct: 192 PQFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSISGFQDLIEERSRLKAPPTFMPDGLY 251 Query: 241 FDSVEY 246 V+Y Sbjct: 252 LTGVDY 257 >gi|327314538|ref|YP_004329975.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] gi|326944120|gb|AEA20005.1| tRNA pseudouridine synthase A [Prevotella denticola F0289] Length = 255 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 114/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLL--PRDVSVSRIKAVSADLHARFSAVSRTYHYYIHT-- 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + + I LD + M AA +L+G DF F + + Sbjct: 119 GKQPFSRRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPS 178 Query: 180 ----------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514] gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514] Length = 270 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 ++ + I Y+G Y GWQ QK+G +Q +E+A+ + + +H + RTD+GVHA+ VA Sbjct: 5 KFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMVA 64 Query: 63 HFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H ++ + + K A+NA+L + I +++ V FHARF A + Y Y + + Sbjct: 65 HMEIPKAEFRMTSEKLALAINAHL--PEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQ 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A L + +AW +PK LD + MR AA+ + S + + S +RT+ D+ Sbjct: 123 TAMNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDIK 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+L+ + FL+ R VG+L VG GK + D++K L+ +DR+ G AP G Sbjct: 183 KSGSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAHG 242 Query: 239 LYFDSVEY 246 L V Y Sbjct: 243 LVLWKVFY 250 >gi|90416037|ref|ZP_01223970.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] gi|90332411|gb|EAS47608.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2207] Length = 285 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY ++ Y+GS + G+Q+QK+ S+Q +E+A+ V ++V AGRTD+ VHA QV Sbjct: 25 KRYAAVVSYDGSAFCGFQKQKHSPSVQQELERALSSVANAEIIVSCAGRTDTAVHASYQV 84 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD K N+ L S + + V++ FHARFSA R+Y Y I + A Sbjct: 85 IHFDTQALRTGRNWVKGSNSQLPDSIALLWAD--EVNETFHARFSATSRTYRYVIHSAPA 142 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + K L+ M+ A Q+L+G DF+ FR CQ+ SP R I + G Sbjct: 143 RPAILSQGVTWVRKPLNTAAMQEACQYLLGEQDFSAFRGAGCQSLSPNRNITSAKIIQAG 202 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI V A +F+ +R+ +GSL VG G+ + + ++ +DR + A P+GLY Sbjct: 203 ELIVFEVTANAFVLHMVRNIIGSLMEVGFGRRDPGWIGQLIKGRDRTKSAATASPKGLYL 262 Query: 242 DSVEY 246 V Y Sbjct: 263 VQVGY 267 >gi|86132219|ref|ZP_01050814.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] gi|85817138|gb|EAQ38321.1| Pseudouridylate synthase [Dokdonia donghaensis MED134] Length = 263 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/245 (26%), Positives = 103/245 (42%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ + + V++ GAGRTD+GVHA + Sbjct: 8 VRYFIELSYFGKDYHGWQRQPNAVTVQETIEKALSTILRKPVLIMGAGRTDAGVHATQMY 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + L L I I + + A S Y + Sbjct: 68 AHFDWDDDLSLDNKLRNLTYKLNRFLPPDIAIDRIFNVRDEAHTRFDATSRSYLYRIAKR 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +A I +D M AA L+ DF F + ++ + I Sbjct: 128 KNPFSTEQAHAIAYDIDLSLMNEAAAALLDYSDFECFSKSKTEVNTYLCDITRAQWLETE 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L +G GK + + ++ + R G P GLY Sbjct: 188 DEYHFHITANRFLRNMVRAIVGTLLEIGQGKKPVSWIHDVVKGKSRSRAGSSVPGHGLYL 247 Query: 242 DSVEY 246 + Y Sbjct: 248 TEIIY 252 >gi|226949212|ref|YP_002804303.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] gi|226843950|gb|ACO86616.1| tRNA pseudouridine synthase A [Clostridium botulinum A2 str. Kyoto] Length = 246 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 137/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+T E + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTREDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ IP++LD M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHIPETLDINAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +++ + FLH IR G+L VG S D++ L A+DR++ GP AP +GL Sbjct: 179 KDGYVDLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDVKNILTAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|199598865|ref|ZP_03212276.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] gi|199590277|gb|EDY98372.1| tRNA pseudouridine synthase A [Lactobacillus rhamnosus HN001] Length = 247 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 QVISFDYPGNIPAESMLRAMNSL--MPLDIEILKAEIVAADFHARYSAKGKRYRYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + P LD + + +A + LVG HDFT+F + +RTI + Sbjct: 119 YYTNPFNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ +R V + +G+G+ D ++ + +DR++ AP Sbjct: 179 DPAADELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|149175153|ref|ZP_01853776.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] gi|148846131|gb|EDL60471.1| tRNA pseudouridine synthase A [Planctomyces maris DSM 8797] Length = 267 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 95/267 (35%), Positives = 128/267 (47%), Gaps = 23/267 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+GS Y GWQ Q NG S+Q +EKAI +T + V AGRTD+GVHAL Q Sbjct: 1 MRNIKLTLAYDGSEYAGWQVQPNGPSVQACVEKAIEQLTQQRSPVLVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F L L +L ++I + + V FHA +SAI++ Y Y I Sbjct: 61 VASFQTESAIPCKNLQTGLQRFL--PESICVREVREVPPDFHATYSAIQKRYRYVIHNSA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P K + LD + M A Q L+G+HDF F S + ++ +RTI V Sbjct: 119 VPYPFLKKYVSEFGRPLDSDRMHAAGQQLLGQHDFRCFESHYPNKATSVRTITELTVQRT 178 Query: 181 GNLIEI---------------------RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 G VVA FL+ +R+ VG+L VG G+WTS D++ Sbjct: 179 GVWPVWGVLEQAHLSMENSTSAEFITVDVVADGFLYNMVRAIVGTLLDVGVGRWTSNDVQ 238 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 K L DR + GP AP GLY V+Y Sbjct: 239 KILTGMDRSQAGPTAPACGLYLVQVDY 265 >gi|60680398|ref|YP_210542.1| tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|265765551|ref|ZP_06093826.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] gi|81316532|sp|Q5LGZ6|TRUA_BACFN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|60491832|emb|CAH06590.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis NCTC 9343] gi|263254935|gb|EEZ26369.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_16] Length = 252 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 117/247 (47%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E + + LN L IS+ + V HARF A R+Y Y I T Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITT-- 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 120 VKFPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEY 246 + +VEY Sbjct: 240 FLVNVEY 246 >gi|33596565|ref|NP_884208.1| tRNA pseudouridine synthase A [Bordetella parapertussis 12822] gi|33601118|ref|NP_888678.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] gi|42559762|sp|Q7U376|TRUA_BORPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42559763|sp|Q7U386|TRUA_BORBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33566334|emb|CAE37247.1| tRNA pseudouridine synthase A [Bordetella parapertussis] gi|33575553|emb|CAE32631.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50] Length = 270 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 137/248 (55%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L S + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFLPPSIVVQW--ARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARTLLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ + ++ L+A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGRESVAWMDALLRARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEY 246 LY ++EY Sbjct: 239 LYLSAIEY 246 >gi|152980861|ref|YP_001353856.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] gi|189029996|sp|A6T009|TRUA_JANMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|151280938|gb|ABR89348.1| tRNA pseudouridine synthase A [Janthinobacterium sp. Marseille] Length = 271 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 94/249 (37%), Positives = 136/249 (54%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q NG ++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 6 KRIVLGVQYDGTPWQGWQTQLNGLTVQDRLEFALSKFTLQTVSTVCAGRTDAGVHGLEQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKIS----DTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFD E + +N +L S + + FHARFSA R Y Y + Sbjct: 66 VHFDTTLERDMSSWVRGVNTFLPPSIAVRWATEVAHNPDEQDNFHARFSARSRMYQYVLY 125 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G+A + + LD E MR AAQHL+G HDF+TFRS+ CQA SP++++ + Sbjct: 126 NNPVRSPLLEGKAGWVFRKLDVERMRTAAQHLLGEHDFSTFRSVQCQAKSPVKSMYSIKI 185 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+LI + A +FLH +R+ VGSL VG+G L++ L +DRK P P+ Sbjct: 186 EQRGDLIMFTLHANAFLHHMVRNIVGSLIYVGNGAQQPDWLKELLDGRDRKFAAPTFMPD 245 Query: 238 GLYFDSVEY 246 GLY ++Y Sbjct: 246 GLYLAKIDY 254 >gi|148259428|ref|YP_001233555.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|326402654|ref|YP_004282735.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] gi|166228673|sp|A5FVK4|TRUA_ACICJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146401109|gb|ABQ29636.1| tRNA pseudouridine synthase A [Acidiphilium cryptum JF-5] gi|325049515|dbj|BAJ79853.1| tRNA pseudouridine synthase A [Acidiphilium multivorum AIU301] Length = 255 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 110/247 (44%), Positives = 146/247 (59%), Gaps = 1/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALR 59 M R+ + +EY+G G+ GWQRQ+NG S+Q +E A + G V AGRTD+GVHA Sbjct: 1 MRRWALRLEYDGRGFVGWQRQENGLSVQEVLETAASRLCGGDVPDSVVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA +L + +ALN ++K I + RFSAI R+Y Y I+ R Sbjct: 61 QVAALELPDRLDARAVREALNFHMKPHAVAVIEAAPAPSAAWSPRFSAIGRAYRYLILNR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A AL G W + LD M AAQ L+GRHDFT+FR+ CQA+SP+RT+D DV Sbjct: 121 SARPALRDGFVWHVKAPLDAPAMHEAAQSLLGRHDFTSFRASSCQANSPLRTLDRLDVRR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+LKLVG+G+W + +AL A+DR GP APP+GL Sbjct: 181 DGETVVIEAEARSFLHHQVRNMVGTLKLVGEGRWRVGRVAEALAARDRSAAGPTAPPDGL 240 Query: 240 YFDSVEY 246 +V Y Sbjct: 241 VLVAVRY 247 >gi|301161932|emb|CBW21476.1| putative tRNA pseudouridine synthase A [Bacteroides fragilis 638R] Length = 252 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 117/247 (47%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E + + LN L IS+ + V HARF A R+Y Y I T Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITT-- 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 120 VKFPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQK 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEY 246 + +VEY Sbjct: 240 FLVNVEY 246 >gi|191639397|ref|YP_001988563.1| tRNA pseudouridine synthase A [Lactobacillus casei BL23] gi|239630320|ref|ZP_04673351.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067471|ref|YP_003789494.1| pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|238693010|sp|B3WAI6|TRUA_LACCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190713699|emb|CAQ67705.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Lactobacillus casei BL23] gi|239527932|gb|EEQ66933.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439878|gb|ADK19644.1| Pseudouridylate synthase [Lactobacillus casei str. Zhang] gi|327383485|gb|AEA54961.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei LC2W] gi|327386676|gb|AEA58150.1| tRNA pseudouridine synthase A 1 [Lactobacillus casei BD-II] Length = 247 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSL--MPLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|325269743|ref|ZP_08136354.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] gi|324987944|gb|EGC19916.1| tRNA pseudouridine synthase A [Prevotella multiformis DSM 16608] Length = 255 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 114/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E+++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLERSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T Sbjct: 63 VAHFDTAQPFDSGQLVYKMNRLL--PRDVSVSRIEAVSADLHARFSAVSRTYHYYIHT-- 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + I LD + M AA +L+G DF F + + F Sbjct: 119 GKQPFSHRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPF 178 Query: 181 -----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGSTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|94498945|ref|ZP_01305483.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] gi|94428577|gb|EAT13549.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65] Length = 297 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 138/247 (55%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 R+ +EYNG+ + GWQ+QK+ G S+Q ++EKAI V V V AGRTD+GVHA Sbjct: 29 RRFVAGVEYNGALFKGWQKQKHYAGPSVQEALEKAISRVANHTVDVVCAGRTDAGVHASA 88 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +N L D + + + + FHARFSA+ R Y Y I+ + Sbjct: 89 QVIHFDTSAVRDERAWKLGINTNL--PDGVCVNWIMPAPQDFHARFSAVARRYRYFIMNK 146 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q L + LD E M AAQ+L+G HDFT+FR+ CQA +RT+ + V Sbjct: 147 QVKPGLMHDGVSWWRRPLDAEKMHEAAQYLLGEHDFTSFRAKDCQARHAVRTMKYISVKR 206 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + V A +FL+ +R+ VG L +G+GK E+ L AQDR++ G AP EGL Sbjct: 207 LNDWVIVEVCANAFLYHMVRNIVGVLLPIGEGKKPVEWCEQVLAAQDRRQAGVTAPGEGL 266 Query: 240 YFDSVEY 246 YF +VEY Sbjct: 267 YFVNVEY 273 >gi|330998477|ref|ZP_08322301.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] gi|329568583|gb|EGG50388.1| tRNA pseudouridine synthase A [Paraprevotella xylaniphila YIT 11841] Length = 256 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 78/253 (30%), Positives = 110/253 (43%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q ++KA+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFLYLAYDGTSYHGWQIQPNGISVQEVLQKALATLLRQPVSITGAGRTDTGVHARMM 60 Query: 61 VAHFDLVR------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD L LN L ISI V HARF A+ R+Y Y Sbjct: 61 VAHFDFEYADDPVRRIDGRWLTDKLNRLL--PPDISIYKTVPVAADAHARFDALSRTYHY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTID 173 + + + + + LD M AA L DFT+F ++ + R + Sbjct: 119 YLH--FGKSPFLRAYSCRLYQMLDFGKMNEAAAALFDYTDFTSFSKVNTDTKTNNCRIMQ 176 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + A FL +R+ VG+L VG GK T ++ +DR G Sbjct: 177 ARWTELAPGEWRFEIQADRFLRNMVRAIVGTLVEVGRGKLTPEGFRAVIEGKDRCRAGES 236 Query: 234 APPEGLYFDSVEY 246 P L+ V Y Sbjct: 237 MPGNALFLVDVAY 249 >gi|255036264|ref|YP_003086885.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] gi|254949020|gb|ACT93720.1| tRNA pseudouridine synthase A [Dyadobacter fermentans DSM 18053] Length = 248 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ+Q N +Q +E A+ V V V G+ RTD+GVHA +Q Sbjct: 1 MRYFIEFSYRGTAYNGWQKQNNALGVQEVLEAALAKVLRAPVEVTGSSRTDAGVHAEQQF 60 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFDL ++ LNA + I++ L V + H+RF+A R Y YRI Sbjct: 61 AHFDLPAAIPDVDLMVYKLNAL--VPKDIAVQRLIPVAEDVHSRFAATHRKYEYRI--TF 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + ++LD M AA L+ +DF +F IH ++ TI Sbjct: 117 QKNPFLTDLATQMRRNLDVPRMNEAAALLLAHNDFESFSKIHTNVNNFRCTITESRWVEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ V A FL +R+ VG++ VG K T D E+ + +++RK G AP EGL+ Sbjct: 177 GEMLVFHVKANRFLRGMVRALVGTMLEVGRQKITVDDFEQIILSRNRKNAGAQAPAEGLF 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LVEVGY 242 >gi|323490654|ref|ZP_08095859.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] gi|323395746|gb|EGA88587.1| tRNA pseudouridine synthase A [Planococcus donghaensis MPA1U2] Length = 247 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRTDSGVHALR 59 M R I Y+GSG+ G+Q Q + ++Q + K + + V V +GRTD+ VHA Sbjct: 1 MKRLKATIAYDGSGFAGYQVQPDSRTVQLELMKVLETIHKGKVIQVVASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KALN L + I + ++ VD FHAR+ ++Y Y+ Sbjct: 61 QVIHFDTELSIPIIGWLKALNVLL--PEDIRVHSIEEVDTSFHARYHTTGKTYRYKWDRS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q + + + LD E M+ A+Q +VG HDF++F + + +RT+ D Sbjct: 119 QIISPFTRSLMVHVKQPLDVEAMKKASQAIVGTHDFSSFCAANTAVVDKVRTVRRLDFEE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 GN + + + FL+ +R G+L VG G+ + +LE + A DR G AP GL Sbjct: 179 HGNELHMVIEGTGFLYNMVRIIAGTLAEVGMGRRKAEELEDIVSATDRDAAGITAPAHGL 238 Query: 240 YFDSVEY 246 Y ++V Y Sbjct: 239 YLENVMY 245 >gi|315649669|ref|ZP_07902753.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] gi|315274857|gb|EFU38233.1| tRNA pseudouridine synthase A [Paenibacillus vortex V453] Length = 266 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 122/256 (47%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M M + Y+G+ Y G+Q Q G +IQ +E AI ++GE + + +GRTD+GVHA Q Sbjct: 1 MRNLLMRVSYDGTDYNGFQTQPGGHTIQDYLEDAIHRLSGEQLKIIASGRTDAGVHARAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALN +L + I + + V +FH+R +A R++Y Y I Q Sbjct: 61 VFNFYTASPIPLERWCMALNTWL--PEDIVVSDAMEVPMEFHSRHAAKRKTYRYTINANQ 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + LD M +HL+G +D+TTF S SS +RTI Sbjct: 119 HPDLFNRRYQIHHYGQLDIPAMEQGLRHLIGTYDYTTFASRKSTKSSHVRTIFDAWFERD 178 Query: 181 GNLI----------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ + FL +R +G+L VG+GK D++ L+A++R Sbjct: 179 TSMCRPGTRDQGVIHTYLSGNGFLQHMVRIIMGTLIEVGEGKRHPDDMKIILEAKNRAAA 238 Query: 231 GPLAPPEGLYFDSVEY 246 GP A +GL VEY Sbjct: 239 GPTAMGKGLMLWEVEY 254 >gi|116495915|ref|YP_807649.1| tRNA pseudouridine synthase A [Lactobacillus casei ATCC 334] gi|122262685|sp|Q035B5|TRUA_LACC3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116106065|gb|ABJ71207.1| Pseudouridylate synthase [Lactobacillus casei ATCC 334] Length = 247 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 1 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 61 QVISFDYPGNIPAESMLKAMNSL--MPLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 179 DSVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLKEVYY 247 >gi|319789624|ref|YP_004151257.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] gi|317114126|gb|ADU96616.1| tRNA pseudouridine synthase A [Thermovibrio ammonificans HB-1] Length = 254 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 131/251 (52%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + +EY G+ Y+GWQ + ++QG I + + V V + GA RTD+GVHA Q Sbjct: 1 MRNFKLTVEYLGTNYYGWQFLPDKPTVQGEIIRCLETVLRHPVKLIGASRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E L ALN L I + + V +FHAR SA + Y YR+ R Sbjct: 61 VANFLTAKEVSCEKLLSALNGLL--PPDIRVKEVEEVPLEFHARRSARGKLYRYRLFIRD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDV-- 177 P E R+W + ++L E MR A Q LV T +S + +PIRTID ++ Sbjct: 119 VPSPFEFRRSWYLRRTLSVEPMREATQFLVGTHDFTTFSKSERKREVNPIRTIDKIEITN 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G L+E+ RSFL +R V +L VG G+ ++++ LQA+DR LAP Sbjct: 179 KEWEEGVLVELLFTGRSFLRHMVRVIVATLVKVGTGEVKPQEVKEMLQAKDRSRAPFLAP 238 Query: 236 PEGLYFDSVEY 246 P+GLY + V Y Sbjct: 239 PDGLYLERVFY 249 >gi|217077259|ref|YP_002334977.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] gi|226708660|sp|B7IHS2|TRUA_THEAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217037114|gb|ACJ75636.1| tRNA pseudouridine synthase A [Thermosipho africanus TCF52B] Length = 244 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 127/245 (51%), Gaps = 4/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + Y+G+ +FG+Q Q N ++QG +E A+ + E + AGRTD+GVHA Q Sbjct: 1 MKRFAIEFAYDGTKFFGYQGQPNVRTVQGDLEDALERIFKERIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F+ E + K ALNA L D I + +VDK F+ RF+A +R Y Y I T Sbjct: 61 VAAFNCPIERLTETDIKNALNANL--PDDIYVKKAWVVDKSFNPRFAATKRIYHYFISTN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + W LD E MR AA L G HDF++F+ + + + Sbjct: 119 EK-DVFMRNYVWNFRYDLDIEAMRKAASFLEGEHDFSSFKKGKDEKNPVRTIYRIRILTL 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI IRV RSFL + +R+ VGSL VG G+W + + L+ + R+E APP GL Sbjct: 178 KKGLILIRVEGRSFLRSMVRNIVGSLVRVGLGQWKPEKILEVLEKRSRQEAAGTAPPHGL 237 Query: 240 YFDSV 244 Y V Sbjct: 238 YLYKV 242 >gi|78485146|ref|YP_391071.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] gi|123741632|sp|Q31HH6|TRUA_THICR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78363432|gb|ABB41397.1| tRNA pseudouridine synthase A [Thiomicrospira crunogena XCL-2] Length = 262 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY G+ Y GWQ QK+ S+Q +EKA+ + E + ++ AGRTD+GVHA+ Q Sbjct: 1 MTLLAIGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +AHF+ + +N L + I + + + + FHARFSA+ R Y Y I R Sbjct: 61 IAHFETNASRPDKAWIQGVNTQL--PNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ R + LD + M AAQ L+G +DF++FR+ CQAS R + + V+ Sbjct: 119 VHSAILANRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GN + + + A +FLH +R+ VG+L VG + + L+ QDR + G AP GLY Sbjct: 179 GNFVFVDIQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLY 238 Query: 241 FDSVEY 246 F + Y Sbjct: 239 FVNALY 244 >gi|238925343|ref|YP_002938860.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] gi|238877019|gb|ACR76726.1| tRNA pseudouridine synthase A [Eubacterium rectale ATCC 33656] Length = 252 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R MI+ Y+G+ Y GWQ Q NG +I+ + + + + E + V GA RTD+GVH+L V Sbjct: 9 MRVKMIVAYDGTNYCGWQIQPNGITIEQVLNEHLSRLLKEDIKVTGASRTDAGVHSLGNV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD + ALN L + I +++ V FH RFS R++Y YRI+ + Sbjct: 69 CMFDTNTRMPAEKISYALNQKL--PEDIVVVDSCEVSDDFHPRFSKSRKTYEYRILNARF 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + LD E M AA++L+G HDF +F S + QA + +RTI V+ G Sbjct: 127 RNPTRRLDTYFYHYPLDTEKMSEAAKYLIGEHDFASFCSANSQAQTTVRTIYDCTVSKAG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I IRV FL+ +R G+L +G + ++ + DR GP AP GL Sbjct: 187 DIITIRVTGNGFLYNMVRIIAGTLVKIGGSDMPADAMKDIIATTDRAAAGPTAPAHGLTM 246 Query: 242 DSVEY 246 ++Y Sbjct: 247 IGLKY 251 >gi|309389901|gb|ADO77781.1| tRNA pseudouridine synthase A [Halanaerobium praevalens DSM 2228] Length = 248 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 128/249 (51%), Gaps = 5/249 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y +I+EY+GS Y GWQRQKN +IQ IE+A+ + V + GAGRTD+GVHA Sbjct: 1 MRKNYKIIVEYDGSNYSGWQRQKNTEQTIQQKIEEALTKINKSQVKIDGAGRTDAGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q A+F L E P + ALN L D I V++ FHAR+ A + Y YRI+ Sbjct: 61 GQSANFFLDVEIPPTKIPIALNTEL--PDDIICKKAIKVNQNFHARYDARGKKYRYRILN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + K LD + M+ AA+ G HDF +F + S +RTI D+ Sbjct: 119 SNFNSVFVRNFVYNVYKKLDLKMMQKAAKIFEGSHDFASFCAAGSSVESTVRTIRSIDIY 178 Query: 179 SFGNLIEI-RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + +V FL+ +R G+ G GK T ++LE LQ+ +RK G AP + Sbjct: 179 AVDDSEIWLDIVGNGFLYNMVRILAGTFIETGMGKKTLSELEVILQSCNRKNAGFTAPAQ 238 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 239 GLTLMEVFY 247 >gi|238917621|ref|YP_002931138.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238872981|gb|ACR72691.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 249 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+G+ Y+GW+ Q +IQG +E + +TG V V GAGRTD+GVHA Sbjct: 1 MKNYKMIITYDGTRYYGWEHQPTTDMTIQGKLESVLSAMTGTEVEVIGAGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+ + + +C +N YL + I + + I +FH+R++A ++Y Y Sbjct: 61 MVANAHMETKMKEDDICDYMNRYL--PEDICVQEVRIASDRFHSRYNAQGKTYCYTCYVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + +I LD E M+ AA L G HD+ +F S +R I DV+ Sbjct: 119 DKKPVFNRKYVNIIEGKLDVEAMKKAADILTGEHDYASFCGNPKMKKSTVREIYSIDVSL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + FL +R G+L VG GK T + + L+ ++R G AP +GL Sbjct: 179 KGSFLNLTYHGSGFLQYMVRILSGTLLEVGQGKRTPESMYELLEERNRSLAGATAPAKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLLKVDYS 246 >gi|225552068|ref|ZP_03773008.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] gi|225371066|gb|EEH00496.1| tRNA pseudouridine synthase A [Borrelia sp. SV1] Length = 246 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + V +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALTKINKKKVKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDIKINIQLNNLKKALNAILLKNSI-KILKLRYVKNSFHPRFSAQKRKYSYFILNND 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G+HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNINNLNQMAKTLIGKHDFTTFSCIKDKSKSKFRHIHFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDRVYY 245 >gi|219685340|ref|ZP_03540159.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] gi|219673113|gb|EED30133.1| tRNA pseudouridine synthase A [Borrelia garinii Far04] Length = 246 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEIAYEGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALN+ L + IL L V FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNSILLKNSI-KILKLKYVKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESVSTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|326202743|ref|ZP_08192611.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] gi|325987327|gb|EGD48155.1| tRNA pseudouridine synthase A [Clostridium papyrosolvens DSM 2782] Length = 247 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y +I++Y+GS Y GWQ+ K+ SIQG IE + ++GE + V G GRTD+G HA Sbjct: 1 MKNYKIIVQYDGSKYKGWQKLKDSDLSIQGKIETVLSKMSGEEIQVIGCGRTDAGTHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F P ++ L +L I + ++ VD++FHA+ +A ++Y+Y I Sbjct: 61 YVANFHTNSRMSPKLILNHLYEFL--PQDIVVRSVEEVDERFHAQHNAKAKTYVYSITKG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + LD M+ AA++L+G HDF +F S+ + S IRTI+ D+ Sbjct: 119 KFRNVFNRKYSFHSEEKLDLVQMKNAAEYLIGTHDFQSFTSLKEGSKSTIRTINSLDIIE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +IEI + FL R VG+L VG K + D++K L + R E P+A P+GL Sbjct: 179 NGMVIEIIINGNDFLLHMARLVVGALLEVGKNKIKAIDVQKILNEKKRTEAVPMAQPKGL 238 Query: 240 YFDSVEYS 247 V+YS Sbjct: 239 CLRDVKYS 246 >gi|188580854|ref|YP_001924299.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] gi|238692887|sp|B1ZGA6|TRUA_METPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179344352|gb|ACB79764.1| tRNA pseudouridine synthase A [Methylobacterium populi BJ001] Length = 252 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 111/250 (44%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++IEY+G + GWQRQ + ++Q +IE A+ +GE + AGRTD+GVHA+ Q Sbjct: 1 MPRYKLVIEYDGGPFCGWQRQADDPTVQAAIETAVTRFSGETARLTCAGRTDAGVHAIHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W + ALNA+L+ I+I++ +V F AR SAIRR Y YRI+ R+ Sbjct: 61 VAHLDLARDWRTDTVRDALNAHLR-PQPIAIVSAEVVTHDFDARHSAIRRHYRYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P AL + W +P LD + M AAQ L+GRHDF+ FR+ CQA+SP+RT++ DV Sbjct: 120 SPAALTRAHVWHVPWPLDADLMHAAAQRLLGRHDFSAFRAAECQAASPVRTLEQLDVTRQ 179 Query: 181 GN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I I ARSFLH Q+R+ G+L L G + ++ D+ + L + + CGPLAP Sbjct: 180 RMGLFEEIVIATSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPA 239 Query: 237 EGLYFDSVEY 246 GL F V+Y Sbjct: 240 CGLTFVGVDY 249 >gi|70729445|ref|YP_259183.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] gi|68343744|gb|AAY91350.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens Pf-5] Length = 274 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ S+Q ++EKA+ V VVV AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYRGWQRQASGVPSVQETLEKALSRVADSPVVVSCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N L IS+ + FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAVRSMKAWVMGANINL--PHDISVSWAKEMPAHFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA LVG HDF+ FR+ CQA SPI+ I H V G Sbjct: 126 RPAHLNEEITWNHRPLDIERMAQAAAFLVGTHDFSAFRAGQCQAKSPIKEIHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVLDIRASAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESRIRRTGGVTAHPFGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|294673952|ref|YP_003574568.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] gi|294472804|gb|ADE82193.1| tRNA pseudouridine synthase A [Prevotella ruminicola 23] Length = 244 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG S+QG +++ + + + + + GAGRTD+GVHA Sbjct: 3 KRYFIWLSYDGTNYHGWQVQPNGISVQGELQRVLSTLLRQDISITGAGRTDAGVHARVMA 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF++ + L +N L I I + V HARFSA R+Y Y I TR Sbjct: 63 AHFEIEADIDCKQLAYKMNRML--PQDIVIDRIEEVSLDMHARFSATERTYHYYIHTR-- 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 E+ + I LD E M A + L DF F H + + + + Sbjct: 119 KCPFERHYSCEIHYPLDFEKMNEAGRILCTYEDFGAFCKAHSDVKTTLCNVTRAEWIQTG 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG G+ + + ++ + R + G P L+ Sbjct: 179 DTTWYFVITANRFLRNMVRAVVGTLVDVGRGRLSLDEFRSVIEGKRRSDAGESMPGNALF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LEDVKY 244 >gi|229591618|ref|YP_002873737.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens SBW25] gi|229363484|emb|CAY50706.1| pseudouridylate synthase I [Pseudomonas fluorescens SBW25] Length = 284 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++EKA+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYRGWQRQASGVLTVQETLEKALSKVADSPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSMKAWVMGANINL--PHDVSVSWAKVMPAHFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AAQHLVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFRAGQCQAKSPIKEVHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I + + A +FLH +R+ G L +G G+ ++ L+++ R+ G A P GLY Sbjct: 196 KMIVLDIRAGAFLHHMVRNIAGVLMTIGTGERPVAWAKEVLESRVRRTGGVTAHPFGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VDVEY 260 >gi|188994646|ref|YP_001928898.1| tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] gi|238691471|sp|B2RIV6|TRUA_PORG3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188594326|dbj|BAG33301.1| putative tRNA pseudouridine synthase A [Porphyromonas gingivalis ATCC 33277] Length = 252 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 120/250 (48%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + YNG+ Y GWQ Q N S+Q ++E+AI + + V V GAGRTD+GVHA Sbjct: 1 MARFFIYLAYNGTRYSGWQTQPNAPSVQQTVEEAISTIVRQPVGVVGAGRTDAGVHAHEM 60 Query: 61 VAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH DL + L + LN L I I ++ V HARF AI R+Y Y + Sbjct: 61 VAHADLPCDTPAEAATLTERLNKLL--PRDIVIYRMAPVKADAHARFDAISRTYHYYL-- 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHFD 176 + +G + LD E M AA L DFT+F +H + T + Sbjct: 117 TEQKDPFMEGLMLKTYRKLDFERMNEAAALLPRYIDFTSFSKLHTDVKTNNCRITEARWM 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + A FL +R+ VG+L VG GK + TD +++QDR G AP Sbjct: 177 PLAQTGQWVFSITADRFLRNMVRAIVGTLFHVGTGKLSITDFRDIIESQDRSRAGSSAPA 236 Query: 237 EGLYFDSVEY 246 LY + V Y Sbjct: 237 HALYLERVVY 246 >gi|88799996|ref|ZP_01115567.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] gi|88777274|gb|EAR08478.1| tRNA-pseudouridine synthase I [Reinekea sp. MED297] Length = 286 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ + GWQ QK S+IQ ++E AI V E V AGRTD+GVHA Q Sbjct: 14 HRIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + +N L D IS+ ++ VD+ FHARFSA R+Y + I Sbjct: 74 IVHFDTRAQRSDYGWKMGINGRL--PDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNW 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL LD M+ AA L+G HDF++FR+ CQA SP+RT+ V F Sbjct: 132 VKSALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARF 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I+ A FLH +R+ VG + +G G+ L +DR+ G A GLY Sbjct: 192 GEFIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLY 251 Query: 241 FDSVEYS 247 F Y+ Sbjct: 252 FVRASYN 258 >gi|297587193|ref|ZP_06945838.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] gi|297575174|gb|EFH93893.1| tRNA-pseudouridine synthase I [Finegoldia magna ATCC 53516] Length = 244 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVNQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + S I VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVK--SEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + ++PIRTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDTNPIRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDFVFTFKAESFLRNMVRILVGSMVDVARGRKSIEWLKNALENKDRQSAGITIEPCGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|325129355|gb|EGC52190.1| tRNA pseudouridine synthase A [Neisseria meningitidis OX99.30304] Length = 265 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|154494877|ref|ZP_02033882.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] gi|154085427|gb|EDN84472.1| hypothetical protein PARMER_03921 [Parabacteroides merdae ATCC 43184] Length = 297 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 119/245 (48%), Gaps = 5/245 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA VA Sbjct: 46 RYFIYLGYNGKKFCGWQIQPNGITVQQSIEEALATLLRQPVPIVGAGRTDAGVHARLMVA 105 Query: 63 HFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L + LN L I++ + V HARF AI R+Y Y + TR+ Sbjct: 106 HFDWQEPIADLAFLAEKLNRLL--PKDIAVYRIVPVRPDAHARFDAISRTYKYYVTTRKD 163 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E IP LD E M A L DFT+F +H + I G Sbjct: 164 PFNYELVY--KIPGKLDFEAMNKACSVLFDYIDFTSFSKLHTDVKTNNCRIYKAGWEREG 221 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ + A FL +R+ VG+L VG GK T + ++A+DR G AP LY Sbjct: 222 DVWVFTIQADRFLRNMVRAIVGTLLEVGRGKLTVDGFRQVIEAKDRGRAGTSAPGHALYL 281 Query: 242 DSVEY 246 V Y Sbjct: 282 VDVTY 286 >gi|326692205|ref|ZP_08229210.1| tRNA pseudouridine synthase A [Leuconostoc argentinum KCTC 3773] Length = 261 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 129/256 (50%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY ++ Y+GS +FG+Q Q KNG ++QG + +A+ + + V GA RTD Sbjct: 1 MPRYKAVVAYDGSEFFGFQVQTKNGVERQRTVQGELNRAVNQMAKLPTPAIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + P + K LN L I I + V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDIQPEGVRKGLNTLL--PRDIMIKQVEKVADDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD ++ A L+G HDF +F + Q ++ +RTI Sbjct: 119 IYRVSTQDFTDPFKRRYTGHFHWRLDVARIQAALPDLLGEHDFASFAASGNQTATTVRTI 178 Query: 173 DHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 DV + E +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADVEVKPDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIVRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GLY D + Y Sbjct: 239 RFTAPASGLYLDEIYY 254 >gi|116627085|ref|YP_819704.1| tRNA pseudouridine synthase A [Streptococcus thermophilus LMD-9] gi|122268312|sp|Q03MR4|TRUA_STRTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116100362|gb|ABJ65508.1| Pseudouridylate synthase [Streptococcus thermophilus LMD-9] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGIPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLPQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|28377870|ref|NP_784762.1| tRNA pseudouridine synthase A [Lactobacillus plantarum WCFS1] gi|254556054|ref|YP_003062471.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308180048|ref|YP_003924176.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258756|sp|Q88XU9|TRUA_LACPL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28270703|emb|CAD63609.1| pseudouridylate synthase A [Lactobacillus plantarum WCFS1] gi|254044981|gb|ACT61774.1| tRNA pseudouridine synthase A [Lactobacillus plantarum JDM1] gi|308045539|gb|ADN98082.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 262 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 3 TRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFDL E P + + LN+ L + +SIV FHAR+ + + Y YR Sbjct: 63 GQTLHFDLPYEINPEGVRRGLNSML--PMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQ 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + D + ++ A L GRHDF+TF + QA +R I Sbjct: 121 NEFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAW 180 Query: 179 SFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + EI+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 181 ALPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPA 240 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 241 AGLYMKKVYY 250 >gi|227533991|ref|ZP_03964040.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188368|gb|EEI68435.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 254 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M Y + + Y+G+ + G+Q Q ++QG ++KA+ +T G+ V V G+GRTDSGVHAL Sbjct: 8 MTHYKVTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMTKGQPVHVDGSGRTDSGVHALG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV FD + KA+N+ + I IL IVD FHAR+SA + YLYR+ Sbjct: 68 QVISFDYPGNIPAESMLKAMNSL--MPLDIEILKAEIVDADFHARYSAKGKRYLYRVARG 125 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 126 YYTNPFNRLYTGHYPYKLDVQRIEVALKDLVGTHDFTSFAASGGVIVDKVRTIYEATVRE 185 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E FL+ +R V + +G+G+ D ++ +DR++ AP Sbjct: 186 DPVTNEIIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFAVKDRQQARGTAPAS 245 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 246 GLYLKEVYY 254 >gi|306826655|ref|ZP_07459958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] gi|304431103|gb|EFM34109.1| tRNA pseudouridine synthase A [Streptococcus pyogenes ATCC 10782] Length = 249 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIKKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEICY 247 >gi|225028683|ref|ZP_03717875.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] gi|224953993|gb|EEG35202.1| hypothetical protein EUBHAL_02962 [Eubacterium hallii DSM 3353] Length = 253 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 128/253 (50%), Gaps = 10/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y M I Y+GS Y+GW+ Q + +IQG +E + + GE + V GAGRTD+GVHA V Sbjct: 3 KNYKMTICYDGSRYYGWEHQPDRDTIQGKLENVLTRMCGEFIDVLGAGRTDAGVHARGMV 62 Query: 62 AH--FDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 A+ FD RE P + +N YL D I++ + ++FHAR+ A+ + Y Sbjct: 63 ANAVFDATDKERGGRERTPDEIRDYMNRYL--PDDIAVKEVREASERFHARYKAVGKLYR 120 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y ++ ++ K D E M+ AA +L G+HD+ +F S +R +D Sbjct: 121 YTCYDGPVKPVFQRKYVAVLEKRPDVEKMQQAAAYLEGKHDYKSFCGNPRMKKSTVRVVD 180 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 ++ G+ I FL +R VG+L VG GK + + L+A++R+ GP Sbjct: 181 KIEITRKGSFIYFDFHGTGFLQNMVRILVGTLLEVGKGKIKPEQIPEILEAKNRQMAGPT 240 Query: 234 APPEGLYFDSVEY 246 AP +GL V+Y Sbjct: 241 APAQGLCLIKVDY 253 >gi|327468298|gb|EGF13783.1| tRNA pseudouridine synthase A [Streptococcus sanguinis SK330] Length = 249 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 126/249 (50%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G G+ G+QRQ + S+Q IEK + + G+ VV+HGAGRTDSGVHAL Sbjct: 1 MTRYKAIISYDGYGFAGFQRQLHARSVQEEIEKTLTRINKGQPVVIHGAGRTDSGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL E L AL+ + + I + + V +FH+R++ ++Y + + Sbjct: 61 QVLHFDLPEERDEEKLRFALDT--QTPEDIDFIRVEQVSDEFHSRYNKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P L+ + A L G HDFT F + +RTI V Sbjct: 119 RPKNPMMRHYATHYPYPLELRLIEEAIAQLEGTHDFTGFTASGTSVEDKVRTITEAKVRY 178 Query: 180 F--GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N + FL+ QIR+ VG+L +G+ + +++ L +DR GP A P Sbjct: 179 DAERNFLVFTFSGNGFLYKQIRNMVGTLLKIGNKRMPVEQIQRILAEKDRHLAGPTAGPN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|291567810|dbj|BAI90082.1| tRNA pseudouridine synthase A [Arthrospira platensis NIES-39] Length = 278 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L + I + V +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNGRL--PADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + + LD M A + L+G H + F+ + + Sbjct: 123 RPNLFIRQFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVECWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG + + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 CLLRVGY 249 >gi|284053328|ref|ZP_06383538.1| tRNA pseudouridine synthase A [Arthrospira platensis str. Paraca] Length = 278 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAISKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L + I + V +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNGRL--PADVLIRASAPVPSDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + + LD M A + L+G H + F+ + + Sbjct: 123 RPNLFIREFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVECWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG + + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAKERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 CLLRVGY 249 >gi|325133363|gb|EGC56028.1| tRNA pseudouridine synthase A [Neisseria meningitidis M13399] Length = 265 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWIRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|15675714|ref|NP_269888.1| tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19746822|ref|NP_607958.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50914971|ref|YP_060943.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71904268|ref|YP_281071.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71911430|ref|YP_282980.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94989250|ref|YP_597351.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94991194|ref|YP_599294.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94993138|ref|YP_601237.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94995068|ref|YP_603166.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|139473113|ref|YP_001127828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209560051|ref|YP_002286523.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] gi|54039783|sp|P65851|TRUA_STRP8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042088|sp|P65850|TRUA_STRP1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901238|sp|Q5XA03|TRUA_STRP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986813|sp|Q1J4W4|TRUA_STRPF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|122986985|sp|Q1JF09|TRUA_STRPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123257716|sp|Q1J9W8|TRUA_STRPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123258127|sp|Q1JK16|TRUA_STRPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123775214|sp|Q48RE4|TRUA_STRPM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229842|sp|A2RCK6|TRUA_STRPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238057736|sp|B5XIG6|TRUA_STRPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13622931|gb|AAK34609.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes M1 GAS] gi|19749059|gb|AAL98457.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS8232] gi|50904045|gb|AAT87760.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10394] gi|71803363|gb|AAX72716.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS6180] gi|71854212|gb|AAZ52235.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS5005] gi|94542758|gb|ABF32807.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS9429] gi|94544702|gb|ABF34750.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10270] gi|94546646|gb|ABF36693.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS2096] gi|94548576|gb|ABF38622.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS10750] gi|134271359|emb|CAM29579.1| tRNA pseudouridine synthase A [Streptococcus pyogenes str. Manfredo] gi|209541252|gb|ACI61828.1| tRNA pseudouridine synthase A [Streptococcus pyogenes NZ131] Length = 249 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQEAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEICY 247 >gi|315186691|gb|EFU20450.1| tRNA pseudouridine synthase A [Spirochaeta thermophila DSM 6578] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ Y+G+ + GWQRQ NG S+QG +E A+ + V VH AGRTDSGVHA+ Q Sbjct: 4 RNIKVVLAYDGTDFVGWQRQPNGRSVQGVVEDALARMHKHPVHVHAAGRTDSGVHAVGQC 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F + ALN++L + L V FHAR+SA+RR Y Y + + Sbjct: 64 INFITDIDSLPVEKFALALNSFL--PRDVKALQAEEVPPDFHARYSAVRREYRYYVFSSP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + + D + A +VG HDF++F S + S +R I Sbjct: 122 SPYPHLRRYSLWVNRLPDVRLLNAYASCIVGEHDFSSFCSPSDPSPSKVRLIHTASWFPE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R+V +FL +R+ VG++ + K + K L+A+DR AP GL+ Sbjct: 182 GARLVFRIVGNAFLWRMVRALVGTMLDLEKQKADPEMMWKILEARDRSAASDSAPAWGLF 241 Query: 241 FDSVEY 246 V+Y Sbjct: 242 LHEVQY 247 >gi|21911175|ref|NP_665443.1| tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28895139|ref|NP_801489.1| tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] gi|25453306|sp|Q8K5W2|TRUA_STRP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21905386|gb|AAM80246.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes MGAS315] gi|28810384|dbj|BAC63322.1| putative tRNA pseudouridine synthase A [Streptococcus pyogenes SSI-1] Length = 249 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 130/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ++ ++Q IEK ++ + G +++HGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQRHLRTVQEEIEKTLYKLNNGTKIIIHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E L AL+ + + I ++N+ V FH R+ ++Y + + Sbjct: 61 QVIHFDLPQEQEVEKLRFALDT--QTPEDIDVVNIEKVADDFHCRYQKHLKTYEFLVDNG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 + + + P +L+ + M+ A LVG HDFT F + + +RTI Sbjct: 119 RPKNPMMRHYTTHYPYTLNIKLMQDAINGLVGTHDFTGFTAAGTSVQNKVRTITKATVSR 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ Q+R+ VG+L +G+G+ ++ L +++R+ GP Sbjct: 179 DEKTDFLVFTFSGNGFLYKQVRNMVGTLLKIGNGQMPVEQVKVILSSKNRQLAGPTISGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEICY 247 >gi|157371571|ref|YP_001479560.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] gi|157323335|gb|ABV42432.1| tRNA pseudouridine synthase A [Serratia proteamaculans 568] Length = 273 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ+ +S+Q +E+A+ V + V AGRTD+GVHA QV Sbjct: 13 KIALGIEYDGSQYYGWQRQQEVASVQACLEQALSKVADAPINVLCAGRTDAGVHATGQVV 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +N +L I++ ++ V++ FHARFSA R Y Y I + Sbjct: 73 HFETTAQRKDAAWTMGVNTHL--PPDIAVRWVTGVNEDFHARFSATARRYRYIIYNHRYR 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V +G Sbjct: 131 PAVLQKGMTHFYHPLDAERMERAAQALLGENDFTSFRTVQCQSRTPWRNVKHVKVTRYGE 190 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + + L +DR A +GLY Sbjct: 191 YIVVDIKANAFVHHMVRNIVGSLMEIGCGNQDENWMAELLALKDRNLAAATARADGLYLV 250 Query: 243 SVEY 246 SV+Y Sbjct: 251 SVDY 254 >gi|315925222|ref|ZP_07921436.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621456|gb|EFV01423.1| tRNA pseudouridine synthase A [Pseudoramibacter alactolyticus ATCC 23263] Length = 249 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 118/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++I Y G+ Y GWQRQ+N SI +I AI VTGE V ++GAGRTD+GVHA Q Sbjct: 1 MRNIALVIAYKGTRYAGWQRQQNAVSIDETIGDAIAAVTGERVTLYGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F ALNA+L I I V FH+R+ A ++Y YR+ Sbjct: 61 RANFKTRVRMPADRFAPALNAHL--PRDIRIQKSFEVPADFHSRYGAKEKTYCYRVWAAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + L+ + MR A LVG HDF TF + A + +R ID + Sbjct: 119 VADPLTDDFCWHVRFPLNVDAMRRGAAVLVGTHDFKTFMASGSGAKTTVRRIDAIGIEQK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +I FL+ +R G+L +G G+ + L A+ R G AP GL Sbjct: 179 GRMITFTFCGTGFLYNMVRIIAGTLVEMGSGRRDPESMAAILAAKGRTAAGATAPARGLT 238 Query: 241 FDSVEY 246 ++V Y Sbjct: 239 LEAVAY 244 >gi|323135724|ref|ZP_08070807.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] gi|322398815|gb|EFY01334.1| tRNA pseudouridine synthase A [Methylocystis sp. ATCC 49242] Length = 245 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 134/246 (54%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G + GWQRQ NG S+Q +E+A+ + G V+HGAGRTD+GVHAL Q Sbjct: 1 MPRYALTIEYDGGPFVGWQRQANGVSVQQRLEEAVAAINGARAVIHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL REW L ALNA+LK + ++ D+ F ARFSAIRR Y Y I R+ Sbjct: 61 VAHVDLAREWRADRLRDALNAHLKPDPVAVVSARAV-DENFEARFSAIRRHYRYVIDNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + GRAW + + LD + M AAQ LVGRHDFTTFR+ CQA+SP+RT++ DV Sbjct: 120 APLTVGLGRAWHVKRPLDAQAMHDAAQRLVGRHDFTTFRASECQANSPVRTLERLDVRRE 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS GSL+ VG GKWT+ DL AL+A+DR CG +APP GLY Sbjct: 180 GDRIEIVTCARSFLHNQVRSMAGSLEHVGSGKWTADDLAAALEAKDRARCGQVAPPHGLY 239 Query: 241 FDSVEY 246 +V+Y Sbjct: 240 LVAVDY 245 >gi|294506655|ref|YP_003570713.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] gi|294342983|emb|CBH23761.1| tRNA pseudouridine synthase A [Salinibacter ruber M8] Length = 265 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 108/246 (43%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +IEY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRFLIEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVAGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN D +++ + FHAR+ A RR Y Y + T+ Sbjct: 61 VAHVDLPETRDPYRLRGSLNGL--TPDAVAVRRVERAPDDFHARYDACRRRYHYHLHTQP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + T + + Sbjct: 119 CALGRRARTPVRPVPDFGRIRAAAPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDEAR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPEGL Sbjct: 179 RGCWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEGLV 238 Query: 241 FDSVEY 246 ++V Y Sbjct: 239 LEAVRY 244 >gi|120434790|ref|YP_860476.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117576940|emb|CAL65409.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 259 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 118/244 (48%), Gaps = 4/244 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + + Y G Y GWQ Q N S+Q IEK + V + + GAGRTD+GVHA + A Sbjct: 13 RYFIELSYFGKAYHGWQIQPNSISVQEVIEKNLSKVLRSTIEIVGAGRTDAGVHAKQMFA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD+ R +L LN+ L I+I ++ V+K HARF A RSY Y +I + P Sbjct: 73 HFDVDRVLDLELLKYKLNSML--PKDIAISDIFPVNKNVHARFDATSRSYEYHLIQEKDP 130 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 E ++ NM A L G +F F + ID + GN Sbjct: 131 FNRESAWFLKHEVKIEKMNMA--AATLRGYTNFKCFSKSKTDVRTYNCRIDEAEWRMEGN 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ + A FL +R+ VG+L +G K + + + ++++DR + G P GLY Sbjct: 189 LMVFHITADRFLRNMVRAVVGTLIEIGQNKHPVSYMHEVIKSEDRGKAGASVPAHGLYLT 248 Query: 243 SVEY 246 ++Y Sbjct: 249 RIKY 252 >gi|116490689|ref|YP_810233.1| pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290890104|ref|ZP_06553187.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] gi|122277127|sp|Q04G54|TRUA_OENOB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116091414|gb|ABJ56568.1| Pseudouridylate synthase [Oenococcus oeni PSU-1] gi|290480295|gb|EFD88936.1| hypothetical protein AWRIB429_0577 [Oenococcus oeni AWRIB429] Length = 252 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+G + G+Q Q ++Q + K + + + V GA RTD+GVHA Sbjct: 1 MQNYKVTISYDGHYFEGFQTQNRPGSRTVQDELIKVVSKMAKTKIKVIGASRTDAGVHAN 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F + + +N+ L I + + V F+AR S+ R+ YLYR+ T Sbjct: 61 GQVINFIFPFDLNEKAILMGMNSQL--PTDILVKKVEKVPINFNARHSSHRKRYLYRVST 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ +LD ++ A L+G HDF++F + Q ++ IRT+ ++ Sbjct: 119 SKFIDPFKRFYTGHYFWNLDTNKIQEALPDLIGEHDFSSFAASGNQTATTIRTVTKAELK 178 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 F E +FL+ QIR VG L +G+G D+ + ++ +DR++ AP Sbjct: 179 IFPKNNELLFTFEGNAFLYNQIRIMVGVLLEIGNGTRPVHDIIRLIKIKDRQQARFTAPA 238 Query: 237 EGLYFDSVEY 246 GLY D V Y Sbjct: 239 SGLYLDEVYY 248 >gi|256852067|ref|ZP_05557454.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260661364|ref|ZP_05862277.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] gi|256615479|gb|EEU20669.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 27-2-CHN] gi|260547819|gb|EEX23796.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 115-3-CHN] Length = 262 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSM--MPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 E + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVINTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 239 SGLYLYHVFY 248 >gi|59802129|ref|YP_208841.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA 1090] gi|62901142|sp|Q5F5V8|TRUA_NEIG1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|59719024|gb|AAW90429.1| putative tRNA pseudouridine synthase [Neisseria gonorrhoeae FA 1090] Length = 265 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPAQAWIRGVNAHL--PEGIAVLHARQVAPGFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLELDIGPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|331269740|ref|YP_004396232.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] gi|329126290|gb|AEB76235.1| tRNA pseudouridine synthase A [Clostridium botulinum BKT015925] Length = 245 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ N ++IQ +E + + GE + + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGNTDNTIQCKVENVLNELLGEEISLIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + K YL I + N++ + FH+R++ ++ Y Y I Sbjct: 61 QIANFKTDSNVSNDTILKHCYKYL--PHDIVVTNVADASENFHSRYNVKKKIYTYNICNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + ++LD + M+ A++ +G HDF +F ++ + S ++TID Sbjct: 119 PVHDVFTRKYSYHVKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSISFKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IE+ FL+ IR VGSL VG GK T DLE + +DR AP GL Sbjct: 179 KDNNIEVIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLENIMNEKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 ILTEVKY 245 >gi|325124398|gb|ADY83921.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus PHEA-2] Length = 265 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 131/248 (52%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEYS 247 YF YS Sbjct: 239 YFIQCNYS 246 >gi|222100131|ref|YP_002534699.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] gi|254764873|sp|B9K8Q0|TRUA_THENN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221572521|gb|ACM23333.1| tRNA pseudouridine synthase A [Thermotoga neapolitana DSM 4359] Length = 245 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I+EY+GS +FG+Q Q + ++QG IE A+ + + + AGRTD+GVHA Q Sbjct: 1 MRRVAAIVEYDGSNFFGYQGQPDVRTVQGVIEDALERIFKQRIYTQAAGRTDAGVHANGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + F+ + + K A+NA L D + + + V K FH RF +R Y Y I T Sbjct: 61 LIAFNCPNDRMTTEDIKNAMNANL--PDDVYVKKVFEVPKNFHPRFDVKKRIYHYFIHTS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + AW P LD E MR AA++L G HDFT+F++ + ++ Sbjct: 119 REKNVFLRKYAWWFPYELDLEAMRKAAKYLEGTHDFTSFKTGSDERDPVRTIYRIRILSL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I IRV RSFL +R+ V +L VG +W L++ L+A+DR AP GL Sbjct: 179 GKDMILIRVEGRSFLRRMVRNIVAALVKVGLRQWEPEKLKEVLEARDRSAAAGTAPAHGL 238 Query: 240 YFDSV 244 YF V Sbjct: 239 YFYKV 243 >gi|163733492|ref|ZP_02140935.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] gi|161393280|gb|EDQ17606.1| tRNA pseudouridine synthase A [Roseobacter litoralis Och 149] Length = 256 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 122/250 (48%), Positives = 165/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +EY+G+ + GWQRQK S++QG+IE+A+ + + AGRTD+GVHA+ Q Sbjct: 1 MHRYALKVEYHGAPFVGWQRQKEHSTVQGAIEQALGKIAPAPHTIAAAGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DLVR+W P L +ALN +LK I+I ++VD +HARFSA +R YL+RI+ R+ Sbjct: 61 VAHCDLVRDWDPFRLSEALNYHLK-PAPIAITACTVVDADWHARFSARQRQYLFRILCRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 AP ++G W + ++LD MR AA L+G+HDFTTFRS CQA SP++T+D D Sbjct: 120 APATHQRGLVWQVKQNLDVAAMREAAALLIGQHDFTTFRSTICQAESPVKTLDRLDVSEV 179 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +G I V ARSFLH Q+RSFVG+L+ VG G T D+ +AL +DR CGP+ PP Sbjct: 180 ETPYGREIHFDVRARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 YGLYLAHVVY 249 >gi|282882119|ref|ZP_06290760.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] gi|281298149|gb|EFA90604.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B] Length = 243 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q Sbjct: 1 MNILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L + +N +L D IS+++ V FHARFSA + Y Y + + Sbjct: 61 VNFYTDTTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ RA+ P SLD M + ++L+G+ DF +F IRTI V Sbjct: 119 RNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY Sbjct: 179 KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYL 238 Query: 242 DSVEY 246 ++ Y Sbjct: 239 MNILY 243 >gi|302873576|ref|YP_003842209.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307688243|ref|ZP_07630689.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302576433|gb|ADL50445.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQ+ + +IQ +EK + + E V V G+GRTD+GVHA + Sbjct: 1 MNNYKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARK 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F ++ + K YL + I + + VD++FHAR++A ++ Y YRI Sbjct: 61 QIANFHTEKDLKWKDVLKHCYTYL--PEDIVVKSCDKVDEKFHARYNAKKKIYTYRICNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A E+ ++L+ K L+ + M A+++ +G HDF +F S+ + S +R I +N Sbjct: 119 AFGDAFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISINC 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++EI + FLH IR G+L VG GK ++ + +R + G AP GL Sbjct: 179 IGDMVEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAHGL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLVDVIY 245 >gi|300814956|ref|ZP_07095184.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300510926|gb|EFK38198.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 243 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + Y+G+ Y G+Q Q +I+G + KAI + ++ AGRTD GVHAL Q Sbjct: 1 MNILIKVTYDGTNYHGYQIQNKLKTIEGELSKAINDTLKKETKIYSAGRTDRGVHALGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L + +N +L D IS+++ V FHARFSA + Y Y + + Sbjct: 61 VNFYTDTTIDLGNLPRVINFHL--PDDISVISAKEVPFDFHARFSAREKIYRYVVYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ RA+ P SLD M + ++L+G+ DF +F IRTI V Sbjct: 119 RNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +SFL IR +G+ +G GK +++ L+ Q+RK GP AP GLY Sbjct: 179 KFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYL 238 Query: 242 DSVEY 246 ++ Y Sbjct: 239 MNILY 243 >gi|51598275|ref|YP_072463.1| tRNA pseudouridine synthase A [Borrelia garinii PBi] gi|62901275|sp|Q663A0|TRUA_BORGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|51572846|gb|AAU06871.1| pseudouridylate synthase I [Borrelia garinii PBi] Length = 246 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 123/246 (50%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + V +H +GRTD GVHA +Q Sbjct: 1 MKKILAEITYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKVKIHSSGRTDKGVHAKKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L + FH RF+A +R Y YRI+ Sbjct: 61 IITFDININIQLNNLKKALNAILLKNSI-KILKLKYMKNSFHPRFNAQKRKYSYRILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIYLAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|312277540|gb|ADQ62197.1| tRNA pseudouridine synthase A [Streptococcus thermophilus ND03] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+RY I Y+G+ + G+QRQ N SIQ IEK + + +G V VHGAGRTD+GVHA Sbjct: 1 MVRYKATISYDGTLFSGFQRQPNARSIQEEIEKTLLRLNSGTPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL +E P L L+ + D I I+++ +V ++FHAR+S ++Y + + Sbjct: 61 QVIHFDLSQERDPEKLRFGLDT--QCPDDIDIVSIELVSEEFHARYSKHIKTYEFLVDAG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P L M+ AA LVG HDFT F + + +RTI + Sbjct: 119 RPKNPMMRNYAIHYPYPLSLALMQEAAMELVGTHDFTGFTASGTSVENKVRTITQASVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+G+ + + L+++DR GP Sbjct: 179 DEKTGFYVFAFSGNGFLYKQVRNMVGTLLKIGNGRMPVSQAKTVLESRDRNLAGPTVAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIRY 247 >gi|95928687|ref|ZP_01311433.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] gi|95135032|gb|EAT16685.1| tRNA pseudouridine synthase A [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R C+ +EY+G+ Y GWQ Q N ++Q IE A+ V G V V+ +GRTD+GVHA+ Sbjct: 1 MPRLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD+ + +N +L I + + V FHARF A + Y YR+ + Sbjct: 61 KAHFDVETLLPLSAYREGVNRFL--PQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +W + LD E M AA LVG HDF F++ C A++ RT+ + Sbjct: 119 IRSPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLIDE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I V FL +R VGSL VG K T+ L + L + R G AP +GL Sbjct: 179 GDELIIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LMQVWY 244 >gi|295319272|gb|ADF99649.1| tRNA pseudouridine synthase A [Clostridium botulinum F str. 230613] Length = 246 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + +GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + FLH IR G+L VG S D + L+A+DR++ GP AP +GL Sbjct: 179 KDGYVNLVYLGSGFLHKMIRILTGTLIEVGLHNLKSVDCKNILKAEDRRKAGPTAPSQGL 238 Query: 240 YFDSVEY 246 + SV+Y Sbjct: 239 FMTSVDY 245 >gi|325206941|gb|ADZ02394.1| tRNA pseudouridine synthase A [Neisseria meningitidis M04-240196] Length = 265 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|325981656|ref|YP_004294058.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] gi|325531175|gb|ADZ25896.1| tRNA pseudouridine synthase A [Nitrosomonas sp. AL212] Length = 265 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 139/246 (56%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++EY+GS Y GWQ Q SIQ ++E A+ + E + V AGRTD+GVHAL Q Sbjct: 1 MARIILVLEYDGSRYCGWQSQPENCSIQNALETALSKIAHEEIHVITAGRTDAGVHALYQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +NA+L D I++L S V +FHAR+SA+ R YLY ++ + Sbjct: 61 VVHFDTFVQRPLNAWVRGVNAFL--PDDIAVLWASEVSDRFHARYSALERRYLYFLLNQS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + L + M+ AA L+G HDF++FR+ CQA SPIRTI + Sbjct: 119 VRPGVNHKKVGWFHQPLQLDIMQRAANILIGEHDFSSFRAAACQAKSPIRTITQLKIARH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 GNL+ + A +FL +R+ +G L +G GK++S + + L+ +R P P GLY Sbjct: 179 GNLLIFDLRANAFLQHMVRNIIGCLVYIGKGKYSSEWMLELLEGCNRAYAAPTFSPAGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LAGVKY 244 >gi|289422511|ref|ZP_06424354.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] gi|289157083|gb|EFD05705.1| tRNA pseudouridine synthase A [Peptostreptococcus anaerobius 653-L] Length = 243 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y GWQRQK+ IQG +E A V + V G+GRTD+GVHAL Q Sbjct: 1 MKNIRIKVAYQGTNYCGWQRQKDSLGIQGELEYAGQKVFASKIDVTGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + LN L I++L VD+ FH+RFSA ++Y Y+I + Sbjct: 61 VANFKVETTIPIDKIPEVLNNKL--PKDIAVLEAVEVDEDFHSRFSAHNKTYRYQIYPSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K + + LD + M+ + LVG HDF F S + +R I V Sbjct: 119 IRSPFYKDTCYQVKSPLDLDRMKKEVKGLVGVHDFVGFMSSGSSVKTTVREIYDAKVFEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + + FL+ +R G+L +G G + L+++DR G APP+GL+ Sbjct: 179 GDLIVLELTGNGFLYNMVRIIAGTLVDMGRGHIG-DSMVDILESKDRGRAGHTAPPQGLF 237 Query: 241 FDSVEY 246 VEY Sbjct: 238 LKEVEY 243 >gi|330943525|gb|EGH45866.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. pisi str. 1704B] Length = 284 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTHHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|304438671|ref|ZP_07398609.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368320|gb|EFM22007.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 275 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ + + Y+G+ Y G+QRQ ++Q +E A+ V GE V + AGRTD+G Sbjct: 1 MMKARARNIALKVAYDGTNYHGFQRQTPPIRAVQNVLEAALAQVCGETVELASAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I + + F AR SA ++Y+Y Sbjct: 61 VHAYGQVVNFFTDGRIPTERLPRAVNGLL--PPDIVVSEAWEAARDFSARHSATGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R+ + P + AW I + LD + MR A L G HD+++FR+ SP+RT+D Sbjct: 119 RMKECRVPDPFTRSYAWQIFQPLDYDAMRAALHLLEGTHDYSSFRAAGGAPMSPVRTLDT 178 Query: 175 FDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + G + + FL+ +R+ V + VG G+ + + A+DR+ P Sbjct: 179 IRLTAEGEGRLSLYIHGTGFLYHMVRNIVSTAVAVGTGRISKDRFAEIFAARDRRLAPPT 238 Query: 234 APPEGLYFDSVEY 246 AP GLY +V+Y Sbjct: 239 APAGGLYLLAVDY 251 >gi|66044907|ref|YP_234748.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae B728a] gi|63255614|gb|AAY36710.1| tRNA pseudouridine synthase [Pseudomonas syringae pv. syringae B728a] Length = 284 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|187779482|ref|ZP_02995955.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] gi|187773107|gb|EDU36909.1| hypothetical protein CLOSPO_03078 [Clostridium sporogenes ATCC 15579] Length = 246 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+GS Y GWQ+QK N ++IQG IE + L+TGE + + G+GRTD+GVHA Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIGSGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + YL I + + VD++FH+R + ++ Y Y+I + Sbjct: 61 QVANFHTNFQGSTNEILNYCYEYL--PKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ +P++LD E M+ A +LVGRHDF +F + + S +RT+ D+ Sbjct: 119 KFHDVFSRKYSYHVPQTLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++I + FLH IR G+L +G + +++ L+A+DR++ AP +GL Sbjct: 179 KDGYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLSPMNVKTILEAEDRRKASSTAPSQGL 238 Query: 240 YFDSVEY 246 + SV Y Sbjct: 239 FMTSVTY 245 >gi|313903119|ref|ZP_07836513.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] gi|313466621|gb|EFR62141.1| tRNA pseudouridine synthase A [Thermaerobacter subterraneus DSM 13965] Length = 345 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+G+ + GWQRQ ++Q +E+A+ + G V V AGRTD+GVHA QV H Sbjct: 85 LRAVLAYDGTDFAGWQRQAGRRTVQQVVEEALSRLLGHPVRVTAAGRTDAGVHARAQVIH 144 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + L AL L ++ + FHAR++A R++Y+Y + Sbjct: 145 WQTARPFPAERLVPALRGLL--PLDVAAVAAGEAPAGFHARYAARRKTYVYHLWRAPVAD 202 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L + W +P +LD M AA+ L GRHDF F++ + RT+ + G L Sbjct: 203 PLHRRWQWHLPLALDVAAMAEAARRLEGRHDFAAFKAAGSPVRNTRRTLYRCRLEEHGPL 262 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I + A FL R VG+L +G G+W + ++ L R+ GP AP GL Sbjct: 263 LRIVLEADGFLMHMARGIVGTLVEIGRGRWPAGHVDMLLATGRRQLAGPTAPAHGLVLWR 322 Query: 244 VEY 246 VEY Sbjct: 323 VEY 325 >gi|254467822|ref|ZP_05081228.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] gi|207086632|gb|EDZ63915.1| tRNA pseudouridine synthase A [beta proteobacterium KB13] Length = 258 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+EY G+ Y G+Q Q N ++IQ I+KA+ + V + +GRTD+GVHAL QV Sbjct: 1 MRIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N++L ISI +S VDK FHARF+ + R Y Y + Sbjct: 61 FHFDTESQRPLNSWKRGANSFL--PQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+ +A ++ + + + +G+HDFT+FRS CQ+ PIR + Sbjct: 119 PSAIWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I + A FLH QIR+ + + V GK ++ + +DR + P GLY Sbjct: 179 NFILFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYL 238 Query: 242 DSVEY 246 +++Y Sbjct: 239 ANIKY 243 >gi|332297806|ref|YP_004439728.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] gi|332180909|gb|AEE16597.1| tRNA pseudouridine synthase A [Treponema brennaborense DSM 12168] Length = 257 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/253 (30%), Positives = 120/253 (47%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M + + Y+G+ + GWQRQ + ++Q +E+A+ ++ V + G+GRTDSG Sbjct: 1 MKNVLLTVSYDGTDFCGWQRQDHADRGEPVRTVQAELERALRIMLKTPVALTGSGRTDSG 60 Query: 55 VHALRQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VHA Q A+F + P ALN+ L + + V FHARF A R+Y Sbjct: 61 VHAFAQAANFLSPFDSVPPENYVPALNSSL--PPDVRVTAAREVPPGFHARFDARMRTYR 118 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + P A E W I + D + A L G D TTF + S R ++ Sbjct: 119 YFLYCGATPPAHETRYVWPIRRYPDIARLNRMASCLYGEIDCTTFAAAGDPCESKKRYLE 178 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G+ + + A +FL +RS VGSL + + L+A+DR+ GP Sbjct: 179 KAVFYADGDKLVFEIAANAFLWKMVRSVVGSLVYYEQKGKDADFFAEILRARDRRSAGPT 238 Query: 234 APPEGLYFDSVEY 246 APP+GL+ +V++ Sbjct: 239 APPQGLFLWNVDF 251 >gi|319642589|ref|ZP_07997236.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] gi|317385823|gb|EFV66755.1| pseudouridylate synthase [Bacteroides sp. 3_1_40A] Length = 251 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 117/240 (48%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q ++ +A+ + + V GAGRTD+GVHA +AHFD Sbjct: 1 MAYDGTNYHGWQIQPNGDSVQETLMRALSTFLRQEIEVVGAGRTDAGVHARLMIAHFDYD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 RE V + + LN L I++ + V HARF A R+Y Y + TR + Sbjct: 61 RELDCVQITEKLNRLL--PPDIAVYAVKRVKDDAHARFDATYRTYKYYVTTR--KDPFNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-NLIEI 186 AW + SLD E M AA+ L DFT+F +H + I H + Sbjct: 117 HYAWRLFNSLDFEKMNEAARVLFDYTDFTSFSKLHTDVKTNNCRIMHAEWTQVSGTEWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + K ++ +DR G P L+ V Y Sbjct: 177 TIKADRFLRNMVRAVVGTLVEVGRGKMTVDEFRKVIEDKDRCSAGSSVPGHALFLVDVGY 236 >gi|160879036|ref|YP_001558004.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160427702|gb|ABX41265.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M +IIEY+GS Y GWQ+Q +IQ +E + + E V V GA RT++GVHA Sbjct: 1 MRNIQLIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 +QVA F + + + LN +L I++L V ++FHA F+A Y Y+I Sbjct: 61 YKQVASFMTNSKLKVYEIKQYLNRFL--PRDIAVLEALEVPERFHASFNAGSFEYEYKIS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + K D M+ AA++LVG+HDF F S R I ++ Sbjct: 119 IGEVPSVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I I V F +R VG+L VG K D+++ L+++DR + G + Sbjct: 179 YGDEKEIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAK 238 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 239 GLFLTEVHY 247 >gi|325856892|ref|ZP_08172390.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] gi|325483265|gb|EGC86242.1| tRNA pseudouridine synthase A [Prevotella denticola CRIS 18C-A] Length = 255 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 114/257 (44%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q +E ++ ++ E + V GAGRTD+GVH Sbjct: 3 MQRYFITLSYDGTAYHGWQIQPNGISVQEVLEHSLSILLKETITVTGAGRTDAGVHGRMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD + + L +N L +S+ + V HARFSA+ R+Y Y I T Sbjct: 63 VAHFDTAQPFDSEQLVYKMNRLL--PRDVSVSRIEAVSADLHARFSAVSRTYHYYIHT-- 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA +L+G DF F + + F Sbjct: 119 GKQPFSRRYSCEIHYPLDFDKMNEAASYLIGEKDFKCFCKAGADVKTTFCNLTEARWIPF 178 Query: 181 -----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ + D + + R + Sbjct: 179 GDGLSLSSGGTIANWCFVITANRFLRNMVRAVVGTLVDVGRGRLSLADFRQIVDGGTRSD 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ ++Y Sbjct: 239 AGESMPGNALFLWDIKY 255 >gi|253681679|ref|ZP_04862476.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] gi|253561391|gb|EES90843.1| tRNA pseudouridine synthase A [Clostridium botulinum D str. 1873] Length = 245 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + I+Y+G+ Y GWQ+ + ++IQ IE + + GE V + +GRTD+GVHA Sbjct: 1 MRNIKLTIQYDGTRYKGWQKLGDADNTIQYKIESVLNELLGEEVSLIASGRTDAGVHANM 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + K YL I+ ++ + + FH+R++ ++ Y Y I Sbjct: 61 QIANFKTNSNVTNDTILKHCYKYLPQDIVITNISDA--SENFHSRYNVKKKIYTYNIYNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ I ++LD + M+ A++ +G HDF +F ++ + S ++TID Sbjct: 119 PVHDVFTRKYSYHIKETLDIKKMKEASKLFIGEHDFKSFTALKSKKKSTVKTIDSITFKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N IEI FL+ IR VGSL VG GK T DL+ + +DR AP GL Sbjct: 179 KDNNIEIIFTGNGFLYKMIRILVGSLINVGLGKLTIEDLQNIMNKKDRSIAPETAPAHGL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 ILTEVKY 245 >gi|315173151|gb|EFU17168.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1346] Length = 877 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 632 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 691 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 692 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 749 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 750 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 809 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 810 NGKMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 869 Query: 240 YFDSVEY 246 + D V Y Sbjct: 870 FLDEVYY 876 >gi|94677014|ref|YP_588808.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220164|gb|ABF14323.1| tRNA pseudouridine synthase A [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 267 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 122/245 (49%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I YNGS Y+GWQRQK S+Q S+E+A+ +V E + V AGRTD+GVHA QV Sbjct: 8 KIALGIAYNGSLYYGWQRQKELPSVQASLERALSIVANEKISVFCAGRTDTGVHATGQVV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ V +NA L S + V FHARFSA RSY Y I Sbjct: 68 HFETVALRTNKAWTLGVNANLPASIAVRW--AMTVTLNFHARFSATARSYRYIIYNHPLR 125 Query: 123 L-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + LD M A Q L+G DFT+FR+ C + +P R + V G Sbjct: 126 PAMLGSSGYMHFYQPLDPLKMDRAGQCLLGERDFTSFRAQQCTSRTPWRNLHQLIVKRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +FL+ +R+ VG L +G GK + L +DR G A +GLY Sbjct: 186 SYIIVDITANAFLYRMVRNIVGCLIEIGSGKKPENWIADLLARRDRSLAGITARAKGLYL 245 Query: 242 DSVEY 246 +V Y Sbjct: 246 VNVYY 250 >gi|282906560|ref|ZP_06314408.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] gi|282329459|gb|EFB58980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Btn1260] Length = 264 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLHQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|261393361|emb|CAX50997.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis 8013] Length = 265 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|126667385|ref|ZP_01738357.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] gi|126628141|gb|EAZ98766.1| tRNA pseudouridine synthase A [Marinobacter sp. ELB17] Length = 303 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++ EY+G + GWQ+QK+G ++Q + KA V V + AGRTD+GVHA Q+ Sbjct: 18 RVALVFEYDGREFHGWQQQKSGIRAVQQQLAKAASKVADHDVELVCAGRTDAGVHASYQL 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD +N L IS+ FHARFSA+ R Y Y I Sbjct: 78 VHFDTPSLRTMRSWVMGINTAL--PFDISVRWAGQCQGDFHARFSAVYRRYRYIIYNNPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++G+ + L+ ENM AAQ LVG HDF+ FR+ CQ+ SPIR + V G Sbjct: 136 RPGIQRGQVSWNFRPLNAENMHQAAQALVGEHDFSAFRAAGCQSHSPIRFLQSISVTRKG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I V A +FLH +R+ G+L VG + + + L +DR++ G APP+GLY Sbjct: 196 DYLVIDVQANAFLHHMVRNIAGALMAVGCQEQAPDWIGQILATKDRRQAGVTAPPDGLYL 255 Query: 242 DSVEY 246 V Y Sbjct: 256 VDVGY 260 >gi|6685124|gb|AAF23795.1|AF213822_10 tRNA-pseudouridine synthase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 245 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 132/246 (53%), Positives = 171/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +E++G + GWQR+K+G++IQGSIE+A + G+ V AGRTD+GVH L Sbjct: 1 MNRYRLTVEFDGRNFMGWQRKKHGATIQGSIEEAGASIAGQPTPVQAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R++ P L +ALNA LK I+IL+ VD ++HARFS I R YLYRII R+ Sbjct: 61 TAHIDVARDFTPFRLMEALNARLK-PRPIAILSCEQVDPEWHARFSCIGRRYLYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PL LE GRAW + K LD E M IAA+ L+G HDFTTFRS+HCQ+ SP++T+DH DV Sbjct: 120 PPLTLEAGRAWHVIKPLDAETMDIAAKRLIGLHDFTTFRSVHCQSKSPVKTLDHLDVRRI 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ IEI ARSFLH Q+RS VG L LVG G+WT+ D+ AL+A++R G APP+GLY Sbjct: 180 GDQIEITAAARSFLHHQVRSMVGCLVLVGQGQWTADDMTTALEARNRAALGFNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTQAIY 245 >gi|325131279|gb|EGC53990.1| tRNA pseudouridine synthase A [Neisseria meningitidis M6190] gi|325137309|gb|EGC59897.1| tRNA pseudouridine synthase A [Neisseria meningitidis ES14902] gi|325139358|gb|EGC61898.1| tRNA pseudouridine synthase A [Neisseria meningitidis CU385] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|329120625|ref|ZP_08249288.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] gi|327460849|gb|EGF07183.1| tRNA pseudouridine synthase A [Neisseria bacilliformis ATCC BAA-1200] Length = 269 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R +I+ Y+GS +FGWQ+Q G ++Q ++E+A+ + GE + V AGRTD+GVHA Q Sbjct: 7 TRRALIVAYDGSRFFGWQKQAGGVPTVQAALEEALSGIAGERIAVTAAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E + N+ L + ++ V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAERPGQAWVRGTNSLLPEGVAVLRVHN--VPPHFHARFDACGRRYRYVLQSAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA LD MR AA LVG HDF++FR+ CQA SP++T+ ++ Sbjct: 125 VRSPLLAGRAGWTHTPLDPAPMREAAALLVGTHDFSSFRAAECQAKSPVKTLYSVRLSGT 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ VG+L VG G+ + + + A+ R + P P+GLY Sbjct: 185 ARFMALDLHGNAFLHHMVRNIVGALVYVGSGRLSVAGFAELIAAKSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 +Y Sbjct: 245 LTGADY 250 >gi|310644170|ref|YP_003948929.1| tRNA pseudouridine synthase a [Paenibacillus polymyxa SC2] gi|309249121|gb|ADO58688.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa SC2] Length = 261 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 127/256 (49%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q +G++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPSGNTIQDCLENAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALNA+L I + + V FHAR A R++Y Y I + Sbjct: 61 VFNFHTESPIPIHRWCLALNAWL--PRDIIVTDAREVPLSFHARRMAKRKTYRYSINANR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + P +LD M HLVG D+T+F S Q ++ +RTI + Sbjct: 119 FPDIFHRRTQAHHPTNLDVRAMEKGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYITVD 178 Query: 181 GNL----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + I + FL +R +G+L VG+GK + D+ L+A++R + Sbjct: 179 HSFSRPGSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSPDDIPSILEAKNRSKA 238 Query: 231 GPLAPPEGLYFDSVEY 246 GP A L +VEY Sbjct: 239 GPTAVGHALTLWNVEY 254 >gi|325297315|ref|YP_004257232.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] gi|324316868|gb|ADY34759.1| tRNA pseudouridine synthase A [Bacteroides salanitronis DSM 18170] Length = 268 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY M + Y+G+ Y GWQ Q NG+S+Q ++KA+ + V V GAGRTD+GVHA Sbjct: 1 MARYFMYLGYDGTNYHGWQIQPNGASVQEELQKALSTLMRRPVEVVGAGRTDAGVHASLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ I LN L I++ + V HARF A R Y Y + T Sbjct: 61 VAHADIDALADAAIWVGKLNRLL--PPDIAVYRMRRVADDAHARFDATYRKYQYHVTT-- 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNS 179 + + AW + + LD M AA L DFT+F +H + R + + Sbjct: 117 SKNPFLRHYAWRVFQPLDFGRMNEAASVLFEYTDFTSFSKLHTDVKTNNCRILYARWEQT 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG GK T + ++A++R G P L Sbjct: 177 GADEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTIEGFRRVIEAKNRCSAGTSVPGNAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVGY 243 >gi|325127315|gb|EGC50250.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|304388653|ref|ZP_07370715.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] gi|304337399|gb|EFM03571.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901] Length = 286 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +EY G+ + G+Q+Q + ++Q +E+AI V E V + AGRTD+GV A Sbjct: 22 MQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAVAAEEVTLVCAGRTDAGVSASG 81 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + +N +L D + + V FHARFSA+ R+Y Y I T Sbjct: 82 QVIHFDTLSSRPLKAWLQGVNTHL--PDAVRVTWAMPVSFHFHARFSALSRTYHYWIQTE 139 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + SLD E M++AA+ L+G HDF++FR+ CQA SP+R I Sbjct: 140 PVRSALFSQQLTWTGHSLDVERMQLAAESLLGEHDFSSFRAAQCQAHSPVREIQAVSFER 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +GNLI RV A +FLH +R+ +GSL LVG G + + +E+ L A+DR P A P GL Sbjct: 200 YGNLILFRVRANAFLHHMVRNLIGSLMLVGRGLQSPSWIEQLLAARDRTLAAPTAAPWGL 259 Query: 240 YFDSVEY 246 +VEY Sbjct: 260 SLVAVEY 266 >gi|325141434|gb|EGC63912.1| tRNA pseudouridine synthase A [Neisseria meningitidis 961-5945] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTIVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|256958303|ref|ZP_05562474.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|257078388|ref|ZP_05572749.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257420509|ref|ZP_05597499.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294780153|ref|ZP_06745525.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|307268416|ref|ZP_07549794.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|256948799|gb|EEU65431.1| tRNA pseudouridine synthase [Enterococcus faecalis DS5] gi|256986418|gb|EEU73720.1| tRNA pseudouridine synthase [Enterococcus faecalis JH1] gi|257162333|gb|EEU92293.1| tRNA pseudouridine synthase [Enterococcus faecalis X98] gi|294452696|gb|EFG21126.1| tRNA pseudouridine synthase A [Enterococcus faecalis PC1.1] gi|306515223|gb|EFM83760.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4248] gi|315036592|gb|EFT48524.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0027] gi|329575477|gb|EGG57017.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1467] Length = 246 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|254804153|ref|YP_003082374.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] gi|254667695|emb|CBA03553.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAARPQQAWIRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRQAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|15677859|ref|NP_275027.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|25009507|sp|Q9JXI2|TRUA_NEIMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7227297|gb|AAF42357.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58] gi|316983916|gb|EFV62895.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] gi|325201083|gb|ADY96538.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|289623904|ref|ZP_06456858.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649364|ref|ZP_06480707.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 2250] gi|298486236|ref|ZP_07004299.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159243|gb|EFI00301.1| tRNA pseudouridine synthase A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325326|gb|EFW81393.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. B076] gi|320327689|gb|EFW83697.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330869252|gb|EGH03961.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877919|gb|EGH12068.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. glycinea str. race 4] gi|330891458|gb|EGH24119.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. mori str. 301020] gi|330985608|gb|EGH83711.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 284 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|224538364|ref|ZP_03678903.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] gi|224519993|gb|EEF89098.1| hypothetical protein BACCELL_03255 [Bacteroides cellulosilyticus DSM 14838] Length = 279 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 112/247 (45%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG S+Q + +A+ + V V GAGRTD+GVHA Sbjct: 29 MQRYFIYLAYDGTAYHGWQIQPNGDSVQECLMRALATLMRREVEVIGAGRTDAGVHASLM 88 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN L IS+ L V HARF A R Y Y + T + Sbjct: 89 VAHFDSDEPLDTAFFTDKLNRLL--PPDISVYRLRAVKPDAHARFDATARMYKYYVTTAK 146 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNS 179 + + + ++ D E M AA+ L DFT+F +H + R + Sbjct: 147 S--PFNRQYRCRLFQTPDFERMNEAARSLFDYTDFTSFSKLHTDVKTNNCRIMHAAWTQI 204 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK T + ++ +DR + G P L Sbjct: 205 DDVTWVFTIQADRFLRNMVRAVVGTLLEVGRGKLTVDGFRRVIEQKDRCKAGTSVPGNAL 264 Query: 240 YFDSVEY 246 + V Y Sbjct: 265 FLVDVTY 271 >gi|257487527|ref|ZP_05641568.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012647|gb|EGH92703.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 284 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTTKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|330962608|gb|EGH62868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 274 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L IS+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDISVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA HLVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAAHLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLESKVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|330901134|gb|EGH32553.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 284 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VGVEY 260 >gi|218767391|ref|YP_002341903.1| tRNA pseudouridine synthase A [Neisseria meningitidis Z2491] gi|25009506|sp|Q9JWF1|TRUA_NEIMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121051399|emb|CAM07691.1| tRNA pseudouridine synthase [Neisseria meningitidis Z2491] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|282879881|ref|ZP_06288608.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] gi|281306275|gb|EFA98308.1| tRNA pseudouridine synthase A [Prevotella timonensis CRIS 5C-B1] Length = 243 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ+Q N S+Q ++KA+ + E +VV GAGRTD+GVHA + Sbjct: 1 MQRYFIYFSYDGTSYHGWQQQPNSHSVQAELQKALSTILREPIVVVGAGRTDTGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ L LN L IS+ + V HARFSA R+Y Y + + + Sbjct: 61 VAHFDIEAVIDGEQLAYKLNRLL--PRDISVAGVKPVQADMHARFSAKWRTYHYYVHSHK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + +P LD M AA HL+ DF F H + + + + Sbjct: 119 N--PFLRHYSCQLPFQLDYPLMNQAANHLLSVTDFGAFCKTHTDVKTTLCEVVRAEWVQT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + A FL +R+ VG+L VG + T + +++ +R G P L Sbjct: 177 GEDSWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLEQFDAVIRSGNRSNAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + +EY Sbjct: 237 FLEEIEY 243 >gi|153874369|ref|ZP_02002618.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] gi|152069168|gb|EDN67383.1| tRNA pseudouridine synthase A [Beggiatoa sp. PS] Length = 272 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ +FGWQ Q + S+QG +E A+ V V V AGRTD+GVHA+ QV Sbjct: 1 MRIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ + N+ L +S+L VD FHARFSA R Y Y I+ R Sbjct: 61 IHADVTVQRSTRSWVLGTNSNL--PIDVSMLWAQSVDNNFHARFSAQARHYRYIILNRPT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + + L+ E M+IA +L+G HDF + +PIRTI V+ Sbjct: 119 RPALLTKQVTWERRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRLMVSRMD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G G+ + L+AQDR G AP GLYF Sbjct: 179 DRVIIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLEAQDRTMGGITAPAAGLYF 238 Query: 242 DSVEY 246 ++Y Sbjct: 239 CGIDY 243 >gi|325135431|gb|EGC58051.1| tRNA pseudouridine synthase A [Neisseria meningitidis M0579] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKHRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|282920794|ref|ZP_06328512.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] gi|282315209|gb|EFB45593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C427] Length = 264 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G++ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRYEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|194099947|ref|YP_002003085.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae NCCP11945] gi|240017604|ref|ZP_04724144.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA6140] gi|240114197|ref|ZP_04728687.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|240116830|ref|ZP_04730892.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|254494689|ref|ZP_05107860.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268600271|ref|ZP_06134438.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268602508|ref|ZP_06136675.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|238693230|sp|B4RR02|TRUA_NEIG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193935237|gb|ACF31061.1| TruA [Neisseria gonorrhoeae NCCP11945] gi|226513729|gb|EEH63074.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291] gi|268584402|gb|EEZ49078.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11] gi|268586639|gb|EEZ51315.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18] gi|317165398|gb|ADV08939.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107] Length = 265 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDITAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRTDLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|315154834|gb|EFT98850.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0043] Length = 277 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILKQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|49484433|ref|YP_041657.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA252] gi|257423704|ref|ZP_05600133.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426382|ref|ZP_05602784.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429022|ref|ZP_05605409.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257431668|ref|ZP_05608031.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257434628|ref|ZP_05610679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282902120|ref|ZP_06310013.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|282909528|ref|ZP_06317341.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911780|ref|ZP_06319576.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282915068|ref|ZP_06322845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282925699|ref|ZP_06333347.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|283958992|ref|ZP_06376435.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|293497472|ref|ZP_06665326.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|293511047|ref|ZP_06669744.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|293549653|ref|ZP_06672325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|295428801|ref|ZP_06821425.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589714|ref|ZP_06948355.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|56749728|sp|Q6GEL6|TRUA_STAAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49242562|emb|CAG41283.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272722|gb|EEV04824.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276013|gb|EEV07464.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279503|gb|EEV10090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 68-397] gi|257282547|gb|EEV12679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus E1410] gi|257285224|gb|EEV15340.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M876] gi|282312528|gb|EFB42932.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C101] gi|282320789|gb|EFB51123.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M899] gi|282323476|gb|EFB53792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WBG10049] gi|282326638|gb|EFB56938.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596579|gb|EFC01538.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus C160] gi|283789551|gb|EFC28376.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus A017934/97] gi|290918700|gb|EFD95776.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M1015] gi|291096403|gb|EFE26661.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 58-424] gi|291466034|gb|EFF08563.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus M809] gi|295127150|gb|EFG56792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus EMRSA16] gi|297578225|gb|EFH96938.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8] gi|312437370|gb|ADQ76441.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH60] gi|315193148|gb|EFU23548.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS00] Length = 264 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRIHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQQ 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|308390134|gb|ADO32454.1| tRNA pseudouridine synthase [Neisseria meningitidis alpha710] gi|325204986|gb|ADZ00440.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240355] Length = 265 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALENALAQIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTVAVRPQQAWVRGVNAHL--PEGIAVLHAQQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|237800363|ref|ZP_04588824.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023220|gb|EGI03277.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 284 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTLAERSLKAWVMGANINL--PHDVSVTWARVMPANFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|121635695|ref|YP_975940.1| tRNA pseudouridine synthase A [Neisseria meningitidis FAM18] gi|166228740|sp|A1KWB6|TRUA_NEIMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120867401|emb|CAM11173.1| tRNA pseudouridine synthase [Neisseria meningitidis FAM18] gi|325143594|gb|EGC65914.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240013] Length = 265 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESVP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|39997968|ref|NP_953919.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|42559718|sp|P60350|TRUA_GEOSL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39984913|gb|AAR36269.1| tRNA pseudouridine synthase A [Geobacter sulfurreducens PCA] gi|298506909|gb|ADI85632.1| tRNA pseudouridines 38,39,40 synthase [Geobacter sulfurreducens KN400] Length = 244 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I+EY+G+ Y GWQ Q NG SIQ +E A+ + E V + +GRTD+GVHA Sbjct: 1 MRTIKLILEYDGTNYAGWQLQPNGLSIQEVVEGALARLLKEPVRLRASGRTDAGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD R LNA L I++ + F+ RF+A + Y Y I + Sbjct: 61 VAAFDTDRSIPLRAFSDGLNALL--PPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + ++W + +L+ MR AA+HL G DF +FR+ C A + IR +D +++ Sbjct: 119 RRSPLVRLQSWHVRGALNLAAMREAARHLTGERDFASFRTAGCAARTTIRRVDAVEISDD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G ++ + V FL +R VG+L VG GK T + + + GP APP+GL Sbjct: 179 GEMLTVDVHGSGFLRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPTAPPQGLC 238 Query: 241 FDSVEY 246 V + Sbjct: 239 LQKVRF 244 >gi|161869166|ref|YP_001598332.1| tRNA pseudouridine synthase A [Neisseria meningitidis 053442] gi|189030137|sp|A9M0B8|TRUA_NEIM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|161594719|gb|ABX72379.1| tRNA pseudouridine synthase [Neisseria meningitidis 053442] Length = 265 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 134/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPVQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGQMRQAAALLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 SGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|317502836|ref|ZP_07960938.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] gi|315666051|gb|EFV05616.1| tRNA pseudouridine synthase A [Prevotella salivae DSM 15606] Length = 243 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +++ A+ + + V + GAGRTD+GVHA Sbjct: 1 MQRYFIYFCYDGTAYHGWQIQPNGMSVQETLQNALSTILRQRVEIVGAGRTDTGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL E L LN L IS+ N+ VD HARFSA R+Y Y I TR Sbjct: 61 VAHLDLAEEIECEQLTYKLNRLL--PRDISVFNIQPVDSNMHARFSAKWRTYRYFIHTR- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ P LD E M A+ L DF F ++ + TI Sbjct: 118 -KDPFLRKYSYESPYLLDFELMEQGAELLKQHQDFAAFCKSGADNTTTLCTIKESKWVKT 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L L+G + T DLE+ L+ +R + G P L Sbjct: 177 SPYSWYFEITANRFLRNMVRATVGTLILLGRHRITIKDLERILEEGNRSQAGESMPGHAL 236 Query: 240 YFDSVEY 246 + +++EY Sbjct: 237 FLENIEY 243 >gi|209527116|ref|ZP_03275630.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] gi|209492456|gb|EDZ92797.1| tRNA pseudouridine synthase A [Arthrospira maxima CS-328] Length = 278 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 111/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R +II+Y+G+ + GWQRQ N ++Q IE AI V E V +H AGRTDSGVHA Q Sbjct: 5 QRIALIIQYDGTHFHGWQRQPNQRTVQEDIETAIGKVLKQERVPLHAAGRTDSGVHAAAQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN+ L + I + V K +HARF A R Y Y + T Sbjct: 65 VAHFDAPAHIPAYRWATILNSRL--PADVLIRASAPVAKDWHARFDAQWRRYRYSLYTDA 122 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + + + LD M A + L+G H + F+ + Sbjct: 123 RPNLFIRRFTWHYYHQRLDESLMLAALKPLLGYHHLSAFQRAGSSRPHAWVDVQDVQCWR 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V A FL+ +R VG L VG G+ + + + + R+ APP+GL Sbjct: 183 SEAFIHIEVQASGFLYGMMRLLVGLLVQVGAGERSLENFQDIWVNERREIVKSAAPPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 CLLRVGY 249 >gi|330952706|gb|EGH52966.1| tRNA pseudouridine synthase A [Pseudomonas syringae Cit 7] Length = 274 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|240015157|ref|ZP_04722070.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI18] gi|240122134|ref|ZP_04735096.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID24-1] Length = 265 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E M AA LVG DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMCRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|330973842|gb|EGH73908.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 274 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPIEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|213962633|ref|ZP_03390894.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] gi|213954628|gb|EEB65949.1| tRNA pseudouridine synthase A [Capnocytophaga sputigena Capno] Length = 250 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y GWQ Q S+Q +E+ + + + V GAGRTDSGVHA + Sbjct: 1 MRYFIELSFFGKNYHGWQSQPKAISVQEVLEQGLSTILRTPISVVGAGRTDSGVHASQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ + + LNA+L I++ N+ + H RF A++R+Y Y I T+ Sbjct: 61 AHFDVTEPLPTNFVHR-LNAFL--PKDIAVHNIYEMKPNAHTRFDALKRTYQYHISTQ-- 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A +L+ M AAQ L+ DF F H + I I Sbjct: 116 KDVFAYDYAMFFTHTLNIAIMNEAAQILLDYSDFQCFSKTHTDVKTFICKIYKAHWEKID 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++A FL +R+ VG+L VG K + TD E + +++R + G P GL+ Sbjct: 176 KQLVFTIIADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKNRSKAGASVPACGLFL 235 Query: 242 DSVEY 246 +EY Sbjct: 236 THIEY 240 >gi|302187262|ref|ZP_07263935.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae 642] Length = 274 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPAAFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA+ LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEFLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|300767857|ref|ZP_07077767.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494842|gb|EFK30000.1| tRNA-pseudouridine synthase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 273 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 RY +++ Y+G+ + G+QRQ + +++ + KA+ + E +V++GAGRTD+GVHA Sbjct: 14 TRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 73 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q HFDL E P + + LN+ L + +SIV FHAR+ + + Y YR Sbjct: 74 GQTLHFDLPYEINPEGVRRGLNSML--PMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQ 131 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ + D + ++ A L GRHDF+TF + QA +R I Sbjct: 132 NEFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAW 191 Query: 179 SFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + EI+ FL+ Q+R V L +G G+ + L A+DR++ AP Sbjct: 192 ALPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPA 251 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 252 AGLYMKKVYY 261 >gi|319639209|ref|ZP_07993960.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] gi|317399393|gb|EFV80063.1| tRNA pseudouridine synthase A [Neisseria mucosa C102] Length = 281 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q + ++Q ++E+A+ + GE + AGRTD+GVHA Q Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGERINTIVAGRTDTGVHATAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 73 VVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 VRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYSTKISGT 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ +G+L VG G+ + + E A+ R P +GLY Sbjct: 191 SRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLMAPPTFMSDGLY 250 Query: 241 FDSVEY 246 V+Y Sbjct: 251 LTGVDY 256 >gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379] Length = 265 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS Y G+Q Q N ++IQ IEK++ + + V ++ +GRTDSGVHA QV Sbjct: 1 MRVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD KALNA I I I+ + + FH R+++ +++Y Y++ + Sbjct: 61 LHFDTDLNIPDEAWVKALNA--TIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGRE 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--- 178 + E + A Q+ +G HDF++F S + +RTI + Sbjct: 119 VDPFLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKDL 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N++ + FL+ +R +G+++ V GK+ + +++ L+ ++R+ GP A G Sbjct: 179 INPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAG 238 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 239 LYLKEVLY 246 >gi|154498331|ref|ZP_02036709.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] gi|150272642|gb|EDM99820.1| hypothetical protein BACCAP_02320 [Bacteroides capillosus ATCC 29799] Length = 249 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y G+ Y GWQ QKN +++ ++EKAI V G V GAGRTD+GVHA Sbjct: 1 MRNIALKLMYVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F L A+N L + I ++ + V F+A S I++ Y YRI + Sbjct: 61 IANFRTTSTIPCDRLPLAVNTRL--PEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A RAW PK LD + M+ AA VG HDF +S+ + S +RT+ +F++ Sbjct: 119 IRNAFFVNRAWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++IE RV A FL+ +R+ VG+ +GK+ + L+ + R GP APP GLY Sbjct: 179 GDMIECRVCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 MTKLWY 244 >gi|325266500|ref|ZP_08133177.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] gi|324981943|gb|EGC17578.1| tRNA pseudouridine synthase A [Kingella denitrificans ATCC 33394] Length = 265 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 139/246 (56%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + Y+GS +FGWQ+Q + +++Q ++E A+ + GE V V AGRTD+GVHA Q Sbjct: 7 TRYALTLAYDGSRFFGWQKQAEGVATVQAALEHALSQIAGEPVSVIAAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +NA+L + ++ D FHARF A R Y Y + + Sbjct: 67 VVHFDSRADRPLSAWVRGVNAHLPQGVAVHKAQIA--DSAFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +L+ + MR AAQ LVG HDF++FR+ CQA SP++T+ + Sbjct: 125 VRSPLLYGRAGWTHYALNDDAMRQAAQLLVGEHDFSSFRAAQCQAKSPVKTMYAVHLQRT 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+++ + A +FLH +R+ +G+L VG G+ + + ++ + R P P+GLY Sbjct: 185 GSLLKLDLHANAFLHHMVRNIMGALVYVGCGRLSVAQFGELIETRSRLYAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|332702220|ref|ZP_08422308.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] gi|332552369|gb|EGJ49413.1| tRNA pseudouridine synthase A [Desulfovibrio africanus str. Walvis Bay] Length = 266 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 117/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y G+ + G Q Q ++QG +E + + V + A RTDSGVHAL Q Sbjct: 1 MPRLKLTLAYTGTRFAGLQIQPGCRTVQGEVEAVLARMLNGPVRIDMAARTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ + + KA+NA L D + + + +V +FH+RFSA + Y Y I + Sbjct: 61 VVHLDVPESKMRIPWRKAINALL--PDDVCVTEVEVVPPEFHSRFSATSKVYAYTIWSEL 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ L+ M A QH VGRHDF +F+++ RT+ F Sbjct: 119 EFILPQRKPFVWRMAGLNQTAMDKAMQHFVGRHDFKSFQNVGTPIRDTRRTVARFWREPG 178 Query: 181 GNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 E R+ A FL +R+ +G L VG GK D+ + +DR P AP G Sbjct: 179 QTQWETVYRIQADGFLKQMVRNIIGCLVAVGRGKLCPNDIPALIAVRDRSLAPPTAPSRG 238 Query: 239 LYFDSVEY 246 L + + + Sbjct: 239 LCLERIFF 246 >gi|297538368|ref|YP_003674137.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] gi|297257715|gb|ADI29560.1| tRNA pseudouridine synthase A [Methylotenera sp. 301] Length = 272 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GWQ Q NG +Q ++E AI + V VH AGRTD+GVHA QV Sbjct: 1 MRISLCLAYDGANFCGWQSQSNGGGVQDALELAISSIAQHQVRVHAAGRTDTGVHARCQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L +T+ + VD+ FHARFSA RSY Y + Sbjct: 61 VHFDTTSIRPLTAWVRGVNAHL--PETVRVEWAHEVDEDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A L+ E M AA +LVG HDF+ FR+ CQA + R + +V G Sbjct: 119 APALMATKAGWFHLPLNGEAMSEAASYLVGEHDFSGFRASECQAKTATRNMIKSEVKVAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ +G+L +G G + +++ LQ +DR P P GLY Sbjct: 179 KYFIFEFSANAFLQHQVRNMIGALVYIGKGAYPPIYMKELLQKRDRTLSPPTFSPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TGVGY 243 >gi|313893105|ref|ZP_07826682.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] gi|313442458|gb|EFR60873.1| tRNA pseudouridine synthase A [Veillonella sp. oral taxon 158 str. F0412] Length = 261 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 125/249 (50%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGAIPAENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L K W + K L+ E M+ A L+G HDFTT + + + P++TI V Sbjct: 119 QLIANPLTKRYHWHVKKPLNIELMQAAGNELLGTHDFTTLKGTNSTPADPVKTIMGIQVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 GEGPHVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LCLEEIFFT 247 >gi|269798518|ref|YP_003312418.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] gi|269095147|gb|ACZ25138.1| tRNA pseudouridine synthase A [Veillonella parvula DSM 2008] Length = 261 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 127/249 (51%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I ++ + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K LD + M+ A LVG HDFTT + + + P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LCLEEIFFT 247 >gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30] gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10] gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20] gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC 12755] Length = 245 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQ +E I L+TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGDSEKTIQEKVEGVIKLLTGEEIEIVGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + N YL I + + V ++FHAR+ A + Y Y + Sbjct: 61 QVANFKTTHQMSLPEMQQFFNRYL--PQDIVVNKIEEVPERFHARYHAKGKQYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + ++ P+ LD E M+ AA+ L+G HDF F ++ S +RTID + Sbjct: 119 AIPSVFARNTSFHCPQPLDLEKMQQAAEKLIGTHDFIGFSALKKSKKSTVRTIDEITITP 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ FLH +R G+L +GDG +++ L + R+ G P GL Sbjct: 179 EGDLLRFTFKGNGFLHKMVRILTGTLIAIGDGTLPPEVIDQVLADKVRQAAGETVPSHGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|227554442|ref|ZP_03984489.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229547551|ref|ZP_04436276.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255970776|ref|ZP_05421362.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256761150|ref|ZP_05501730.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256960384|ref|ZP_05564555.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|257080567|ref|ZP_05574928.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|293384357|ref|ZP_06630242.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|307274425|ref|ZP_07555609.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|307287287|ref|ZP_07567351.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|307289762|ref|ZP_07569700.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|312902050|ref|ZP_07761311.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|312908558|ref|ZP_07767502.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|312908972|ref|ZP_07767834.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|312951751|ref|ZP_07770643.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|227176427|gb|EEI57399.1| tRNA-pseudouridine synthase I [Enterococcus faecalis HH22] gi|229307324|gb|EEN73311.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX1322] gi|255961794|gb|EET94270.1| tRNA pseudouridine synthase [Enterococcus faecalis T1] gi|256682401|gb|EEU22096.1| tRNA pseudouridine synthase [Enterococcus faecalis T3] gi|256950880|gb|EEU67512.1| tRNA pseudouridine synthase [Enterococcus faecalis Merz96] gi|256988597|gb|EEU75899.1| tRNA pseudouridine synthase [Enterococcus faecalis E1Sol] gi|291078349|gb|EFE15713.1| tRNA pseudouridine synthase A [Enterococcus faecalis R712] gi|306499218|gb|EFM68695.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0411] gi|306501620|gb|EFM70914.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0109] gi|306508935|gb|EFM78021.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2134] gi|310625525|gb|EFQ08808.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 512] gi|310630239|gb|EFQ13522.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0102] gi|311290672|gb|EFQ69228.1| tRNA pseudouridine synthase A [Enterococcus faecalis DAPTO 516] gi|311290832|gb|EFQ69388.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0470] gi|315030617|gb|EFT42549.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4000] gi|315148974|gb|EFT92990.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX4244] gi|315153400|gb|EFT97416.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0031] gi|315160015|gb|EFU04032.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0312] gi|315166006|gb|EFU10023.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX1302] gi|315575028|gb|EFU87219.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309B] gi|315581086|gb|EFU93277.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0309A] gi|323478960|gb|ADX78399.1| tRNA pseudouridine synthase A [Enterococcus faecalis 62] Length = 246 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|315149110|gb|EFT93126.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0012] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 SGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|253996350|ref|YP_003048414.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] gi|253983029|gb|ACT47887.1| tRNA pseudouridine synthase A [Methylotenera mobilis JLW8] Length = 261 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + + Y+GS Y GWQ Q + +Q ++E A+ V V VH AGRTD+GVHAL Q+ Sbjct: 1 MKIALGVSYDGSLYCGWQSQPSACGVQDALESALQDVAQHAVRVHAAGRTDTGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + + +NA+L TI + VD FHARFSA RSY Y + Sbjct: 61 VHFETDAKRPLSAWVRGVNAHL--PATIRVEWAHAVDDDFHARFSAFSRSYQYLLYNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL +A LD M AA +L+G HDFT FR+ CQA + IR + V G Sbjct: 119 ASALMADKAGWFHLPLDYAAMSEAASYLIGEHDFTAFRASECQAKTAIRHMSQAGVVQSG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FL Q+R+ VG+L +G GK+ + + LQ +DR P P GLY Sbjct: 179 QFFLFNFSANAFLQHQVRNMVGALIYIGKGKYPPAYMRELLQGKDRTLSPPTFSPNGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 TDVGY 243 >gi|153839728|ref|ZP_01992395.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746752|gb|EDM57740.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 123/233 (52%), Gaps = 2/233 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEYNG+ YFGWQRQ+ S+Q +EKA+ +V V V AGRTD+GVH QV Sbjct: 1 MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V NA + I++ V FHARFSA R Y Y I Sbjct: 61 VHFDTNVNRKMVAWTMGANAN--MPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHAL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G Sbjct: 119 RPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + I + A +F+H +R+ GSL VG G+ ++ L+A+DRK G A Sbjct: 179 DYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATA 231 >gi|71737567|ref|YP_273899.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558120|gb|AAZ37331.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. phaseolicola 1448A] Length = 274 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTMKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M +AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMALAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|289671992|ref|ZP_06492882.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. syringae FF5] gi|330975198|gb|EGH75264.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 274 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 124/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERTLKAWVMGANINL--PHDVSVTWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SP++ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPVKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGTGERPVEWAREVLESRIRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VGVEY 250 >gi|56478134|ref|YP_159723.1| tRNA pseudouridine synthase A [Aromatoleum aromaticum EbN1] gi|62901200|sp|Q5P1J2|TRUA_AZOSE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56314177|emb|CAI08822.1| pseudouridylate synthase A [Aromatoleum aromaticum EbN1] Length = 264 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY GS + G+Q Q +G ++Q +E AI + V +H AGRTD+GVHA QV Sbjct: 1 MRIVLGVEYAGSAFEGFQSQAHGRTVQDHLEAAIGHIAAHPVRLHCAGRTDAGVHATAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +N+ L + FHARF A+ R Y Y + Sbjct: 61 VHFDTESVRPNSGWVRGVNSRLSSPVVVRWAT--EAGDGFHARFCAVSRRYRYILHNSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL GR LD M AA+ L G HDF+ FR+ CQA SP++ + V G Sbjct: 119 RPALLAGRVGWFHPPLDEIAMAEAARCLEGWHDFSAFRAAGCQAKSPVKLMHEVRVQRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A +FLH +R+ VG+L VG G+ ++ L + L A+DR +GLY Sbjct: 179 DYVVFDFWANAFLHHMVRNLVGALVYVGKGRHSAAWLAEVLAARDRSLAALTFSADGLYL 238 Query: 242 DSVEYS 247 VEY+ Sbjct: 239 CGVEYA 244 >gi|260439477|ref|ZP_05793293.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291042704|ref|ZP_06568449.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] gi|291013373|gb|EFE05335.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2] Length = 265 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDASGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAASLLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|183599662|ref|ZP_02961155.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] gi|188021916|gb|EDU59956.1| hypothetical protein PROSTU_03151 [Providencia stuartii ATCC 25827] Length = 271 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 133/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E A+ V + V AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVKSVQGCLEDALSKVANHPINVFCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD +N +L + I++ VD++FHARFSA R Y Y I + Sbjct: 69 HFDTPVIRKEAAWTMGVNTHL--PEDIAVRWCKPVDEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H V GN Sbjct: 127 PAILSSGVTHFHYPLDEKKMHEAAQALLGENDFTSFRAVQCQSRTPWRNVMHVQVTRHGN 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L+ +DR + A +GLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDINWMAQLLELKDRTKAAATAKADGLYLV 246 Query: 243 SVEY 246 SV+Y Sbjct: 247 SVDY 250 >gi|311105424|ref|YP_003978277.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] gi|310760113|gb|ADP15562.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans A8] Length = 269 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q + ++Q ++E A+ G V AGRTD+GVH Sbjct: 1 MSRVALGLAYDGSAWQGWQTQPHRQTVQDTLEAALGSFCGVKGPVATICAGRTDTGVHGA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L +IS+ V +FHARFSA R+Y+Y + Sbjct: 61 MQVVHLDTELDRRMESWVRGVNAFL--PSSISVQWAQPVSDEFHARFSARARTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD + MR AA L+G HDF++FRS CQA P+R + D++ Sbjct: 119 GRVRPALWAGRAGWCFQPLDVDAMRTAANALLGEHDFSSFRSSQCQAKHPVRHLYRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L +G G+ + + L +DRK P P+G Sbjct: 179 ERGPFLVFTLKANAFLHHMVRNIMGALLQIGQGREPVDWMAQLLSWRDRKLGAPTFAPDG 238 Query: 239 LYFDSVEY 246 LY +++Y Sbjct: 239 LYLSAIDY 246 >gi|256962868|ref|ZP_05567039.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|307274272|ref|ZP_07555473.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] gi|256953364|gb|EEU69996.1| tRNA pseudouridine synthase [Enterococcus faecalis HIP11704] gi|306509045|gb|EFM78114.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0855] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMERACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|325287217|ref|YP_004263007.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324322671|gb|ADY30136.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 251 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 118/245 (48%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y G+ Y GWQ Q N ++Q +EKA + E + + GAGRTD+GVHA + Sbjct: 1 MRYFVAFSYFGAAYHGWQIQPNAITVQEELEKAFSTLLKEKISLMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ V L + LN++L D I+I N+ V + HARF+A R+Y Y I T+ Sbjct: 61 AHFNTTPISNTVDLMRRLNSFL--PDDIAIQNIYEVPEDAHARFNATERTYEYLITTQ-- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 I + LD E M AAQ L+G+ DF F + T+ Sbjct: 117 KDPFSIVTTHYIKQKLDIEKMNKAAQLLLGKQDFECFSKSKTDVKTYYCTVKKAIWEQKE 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L VG GK T + + ++ R E G P + LY Sbjct: 177 DKFVFTITADRFLRNMVRAIVGTLLDVGTGKITIDHIHTIIASKSRAEAGTSVPAKALYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TQVLY 241 >gi|292670303|ref|ZP_06603729.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] gi|292648034|gb|EFF66006.1| tRNA pseudouridine synthase A [Selenomonas noxia ATCC 43541] Length = 260 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 81/253 (32%), Positives = 125/253 (49%), Gaps = 9/253 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ + I Y+G+ Y G+QRQ ++Q ++E A+ V GE V + AGRTD+G Sbjct: 1 MMKRRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV +F L +A+N L I++ + + F AR SA ++Y+Y Sbjct: 61 VHACGQVVNFFTDGRIPTERLPRAVNGLL--PPDIAVTDAWEAARDFSARHSAKGKAYVY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 R+ P + AW I + LD E MR A LVG HD+++FR+ SP+RTID Sbjct: 119 RMEQCTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDE 178 Query: 175 FDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G + FL+ +R+ + ++ VG + + + A+DR+ P Sbjct: 179 IRLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPT 238 Query: 234 APPEGLYFDSVEY 246 AP GLY V+Y Sbjct: 239 APACGLYLLHVDY 251 >gi|53712218|ref|YP_098210.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|253563743|ref|ZP_04841200.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] gi|62901264|sp|Q64XV0|TRUA_BACFR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|52215083|dbj|BAD47676.1| tRNA pseudouridine synthase A [Bacteroides fragilis YCH46] gi|251947519|gb|EES87801.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_2_5] Length = 252 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 117/247 (47%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ + V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRKDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E + + LN L IS+ + V HARF A R+Y Y I T Sbjct: 64 AHFDYEGEPLDVDKVAEKLNRLL--PQDISVYKVCRVKPDAHARFDATARTYKYYITT-- 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 120 VKFPFNRQYRYRIHNPLDFQKMNEAALTLFHYSDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + D K ++ Q+R + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVVDFRKIIEQQNRCKAGTSAPGNAL 239 Query: 240 YFDSVEY 246 + +VEY Sbjct: 240 FLVNVEY 246 >gi|297205058|ref|ZP_06922454.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] gi|297149636|gb|EFH29933.1| tRNA-pseudouridine synthase I [Lactobacillus jensenii JV-V16] Length = 262 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + G+ +VVHG+GRTD+GVHAL Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + +P ALN+ + I + IV++ FH ++S + Y Y + Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSM--MPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++ P L+ M+ AA L+G HDFT+F + Q +RTI + + Sbjct: 119 DRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIW 178 Query: 179 SFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 E + FL+ +R VG+L +G+ + DL++ + A+DR+E AP Sbjct: 179 QKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPA 238 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 239 SGLYLYHVFY 248 >gi|88607493|ref|YP_505097.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] gi|123722826|sp|Q2GKK4|TRUA_ANAPZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88598556|gb|ABD44026.1| tRNA pseudouridine synthase A [Anaplasma phagocytophilum HZ] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 106/247 (42%), Positives = 151/247 (61%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY ++EY G+ + GWQRQ G S+Q SIE++I + V+V+ AGRTD+GVHA Sbjct: 1 MRYKAVVEYEGTSFIGWQRQHGVVGKSVQESIERSIKEFCQQSVIVYAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL ++ ALN YL+ + L VD++FHARFSA +R Y Y+I R Sbjct: 61 QVVHFDLKVSREDYVIKNALNHYLRNEKVSILQ-LERVDEEFHARFSAKKRHYTYKISNR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +APL ++ R W +PK L+ ENMR AA ++VG+HDF +FR+ CQ+ S I+T+D D+ + Sbjct: 120 EAPLCIDLMRMWHVPKRLNVENMREAASYIVGKHDFASFRAKDCQSKSSIKTVDSIDIIA 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + A+SFLH Q+R VG+ G G + + + L+ +DR G AP GL Sbjct: 180 AEEEININISAQSFLHKQVRITVGTFVECGMGLYPPAHVLEILEKKDRAAAGITAPAHGL 239 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 240 YLTRVDY 246 >gi|332284539|ref|YP_004416450.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] gi|330428492|gb|AEC19826.1| tRNA pseudouridine synthase A [Pusillimonas sp. T7-7] Length = 267 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 128/242 (52%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+GS + GWQ Q G ++Q ++E A+ V AGRTD+GVHAL Q+ H Sbjct: 2 ALGLAYDGSSWQGWQTQPGGLTVQDTLESALAEFLNHPVGTICAGRTDTGVHALEQIVHL 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D P + LNA L S + V FHARFSA+ RSY+Y + + Sbjct: 62 DTQAARRPESWVRGLNALLPASIAVQW--AKPVSDSFHARFSALSRSYVYIVRNTRVRSP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L GR + SL + MR AA+ LVG HDF++FRS CQA+SP+RT+ V G+ Sbjct: 120 LMHGRVGWVYHSLQLDPMRDAARRLVGEHDFSSFRSSQCQAASPVRTLQEASVEQHGDFY 179 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R A +FLH IR+ +G++ +G GK +++ L +DR+ P P GLY V Sbjct: 180 LFRFQANAFLHHMIRNLMGAILYIGQGKQEPGWIDELLAQRDRRRAAPTFSPAGLYLSGV 239 Query: 245 EY 246 Y Sbjct: 240 RY 241 >gi|330878235|gb|EGH12384.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 274 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWAKVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|303237649|ref|ZP_07324209.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] gi|302482101|gb|EFL45136.1| tRNA pseudouridine synthase A [Prevotella disiens FB035-09AN] Length = 255 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 116/257 (45%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG S+Q +EKA+ + + V GAGRTD+GVHA Sbjct: 1 MQRYFIKFSYDGTNYHGWQIQPNGISVQEVLEKALSTLLRTKMSVTGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD L LN L +S++++ V+ + HARFSA R+Y Y + + Sbjct: 61 VAHFDWEAPIDGQQLAYKLNRML--PRDVSVISVEAVENELHARFSATSRTYHYYMH--R 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ +P LD E M AA++L+G DF F + I + Sbjct: 117 GRNPFSRAYSYEMPYELDFERMNEAAKYLIGERDFKCFCKAGGDNKTTICNLTEARWQHC 176 Query: 181 G-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG G+ T + K + R + Sbjct: 177 NTEIAIHEAEKAEEWCFVITANRFLRNMVRAVVGTLVEVGRGRITIDEFRKIVDNGTRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ V Y Sbjct: 237 AGESMPGNALFLWDVTY 253 >gi|258422666|ref|ZP_05685571.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] gi|257847077|gb|EEV71086.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635] Length = 267 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|293610220|ref|ZP_06692521.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827452|gb|EFF85816.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 265 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E +V+HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADEPIVLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPETGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYIIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTYIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIHCNY 245 >gi|329730365|gb|EGG66755.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21193] Length = 267 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTDLNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|225619823|ref|YP_002721080.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] gi|254789605|sp|C0QZT8|TRUA_BRAHW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|225214642|gb|ACN83376.1| tRNA pseudouridine synthase A [Brachyspira hyodysenteriae WA1] Length = 249 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ ++GWQ Q N ++QG I KA+ V GE + ++G GRTD+GVHAL Q Sbjct: 1 MNNIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP+ ALN+YL + I+ + F+AR SA R YLY + Sbjct: 61 VANFRVPKMLVPINKVHIALNSYL--DRDLRIIKAEEMPDSFNARASATFREYLYIVHNS 118 Query: 120 QAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + +D + + A++L+G H+FT+F S + S R ++ Sbjct: 119 STSFPFYERYAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + +FLH +R VG+L K +E L+++DR + AP G Sbjct: 179 RKGDTIYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHG 238 Query: 239 LYFDSVEY 246 LYF + Sbjct: 239 LYFRRAFF 246 >gi|323440101|gb|EGA97816.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11] gi|323442775|gb|EGB00401.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46] Length = 267 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M+ AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMKRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEILKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHDVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|327536150|gb|AEA94984.1| tRNA-pseudouridine synthase I [Enterococcus faecalis OG1RF] Length = 246 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + R Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|254487927|ref|ZP_05101132.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] gi|214044796|gb|EEB85434.1| tRNA pseudouridine synthase A [Roseobacter sp. GAI101] Length = 256 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 166/250 (66%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEYNG+ Y GWQRQ +++QG IE A+ V + AGRTD GVHAL Q Sbjct: 1 MYRYALKIEYNGAPYVGWQRQIGLATVQGVIEDALAKVEPRAHKIAAAGRTDGGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN ++K + +++++ + V +FHARFSA R Y +RI+ R+ Sbjct: 61 VAHCDMERDWDPFRLSEALNFHMK-PNPVAVVDCAPVGPEFHARFSAQERRYQFRILVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + K LD + MR A+HL+G+HDFTTFRS CQA++P++T+D D+++ Sbjct: 120 APATHQAGLVWQVKKPLDLDAMRAGARHLIGQHDFTTFRSTICQAATPVKTVDRIDISAV 179 Query: 181 GNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L + + V ARSFLH Q+RSFVG+L+ VG G T D++ A+DR+ CGP++PP Sbjct: 180 ETLGGLEVHLDVRARSFLHNQVRSFVGTLERVGAGSLTPDDVKVMRDARDRQACGPVSPP 239 Query: 237 EGLYFDSVEY 246 GLY V+Y Sbjct: 240 HGLYLAHVDY 249 >gi|57650803|ref|YP_187018.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87160970|ref|YP_494808.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196131|ref|YP_500948.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222333|ref|YP_001333155.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|161510423|ref|YP_001576082.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140179|ref|ZP_03564672.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450785|ref|ZP_05698844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|262048488|ref|ZP_06021372.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|262052013|ref|ZP_06024224.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|282922088|ref|ZP_06329784.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|284025245|ref|ZP_06379643.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 132] gi|294848752|ref|ZP_06789497.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|304379403|ref|ZP_07362138.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|62901165|sp|Q5HDY9|TRUA_STAAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123098008|sp|Q2FW37|TRUA_STAA8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123763262|sp|Q2FES0|TRUA_STAA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|172049003|sp|A6QJ61|TRUA_STAAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030147|sp|A8Z326|TRUA_STAAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57284989|gb|AAW37083.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus COL] gi|87126944|gb|ABD21458.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203689|gb|ABD31499.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375133|dbj|BAF68393.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. Newman] gi|160369232|gb|ABX30203.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861568|gb|EEV84370.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948] gi|259160068|gb|EEW45101.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3] gi|259163346|gb|EEW47904.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30] gi|269941808|emb|CBI50218.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus TW20] gi|282593556|gb|EFB98549.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765] gi|294824131|gb|EFG40555.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754] gi|302752092|gb|ADL66269.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341935|gb|EFM07839.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198251|gb|EFU28582.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS01] gi|320140243|gb|EFW32102.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA131] gi|320143513|gb|EFW35294.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MRSA177] gi|329314902|gb|AEB89315.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus T0131] gi|329732055|gb|EGG68410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21189] Length = 267 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|229825283|ref|ZP_04451352.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] gi|229790655|gb|EEP26769.1| hypothetical protein GCWU000182_00637 [Abiotrophia defectiva ATCC 49176] Length = 249 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+G+ Y G+Q Q +++G + A+ + GE +V+ GA RTD+GVHA Sbjct: 1 MKRFKLVVAYDGTAYCGYQYQPELPTVEGFVNDALSELLGENIVIIGASRTDAGVHAYGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD L ALN L D I I+ V FH R + I ++Y YRI T + Sbjct: 61 VAVFDSDTRIPAEKLALALNTKLA--DDIRIMESLEVAADFHPRKNVIDKTYEYRINTAK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++ ++ + +LD E MR AA+++ GRHDFT+F S +RT+ DV Sbjct: 119 ISFPTDRLYSYNVKHNLDIEAMREAAKYIEGRHDFTSFCSAKTDKEDKVRTVFQIDVEET 178 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + IRV FL+ +R G+L VG+GK + ++ ++ +DR G P +GL Sbjct: 179 LRSELIIRVRGDGFLYNMVRIIAGTLVKVGEGKISPNEIPSIIERKDRGHLGTTLPAKGL 238 Query: 240 YFDSVEY 246 + + Y Sbjct: 239 FLMGIRY 245 >gi|82751809|ref|YP_417550.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] gi|123727496|sp|Q2YYM7|TRUA_STAAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|82657340|emb|CAI81781.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122] Length = 267 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PVDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++G IP+ LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQRGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|15925209|ref|NP_372743.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|15927799|ref|NP_375332.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|148268659|ref|YP_001247602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|150394724|ref|YP_001317399.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156980534|ref|YP_001442793.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253316980|ref|ZP_04840193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253734372|ref|ZP_04868537.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|255006999|ref|ZP_05145600.2| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794565|ref|ZP_05643544.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|258408833|ref|ZP_05681117.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|258422432|ref|ZP_05685344.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|258439820|ref|ZP_05690566.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|258442624|ref|ZP_05691184.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|258446678|ref|ZP_05694833.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|258450204|ref|ZP_05698296.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|258455424|ref|ZP_05703384.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|269203852|ref|YP_003283121.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282893658|ref|ZP_06301890.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|282926765|ref|ZP_06334392.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|295404895|ref|ZP_06814708.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|296275990|ref|ZP_06858497.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MR1] gi|297243953|ref|ZP_06927843.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|54039782|sp|P65849|TRUA_STAAN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042087|sp|P65848|TRUA_STAAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166229841|sp|A7X5B5|TRUA_STAA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189029998|sp|A5IV03|TRUA_STAA9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030146|sp|A6U3U4|TRUA_STAA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13702019|dbj|BAB43311.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus N315] gi|14247992|dbj|BAB58381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu50] gi|147741728|gb|ABQ50026.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH9] gi|149947176|gb|ABR53112.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus JH1] gi|156722669|dbj|BAF79086.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus Mu3] gi|253727689|gb|EES96418.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus TCH130] gi|257788537|gb|EEV26877.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781] gi|257840516|gb|EEV64976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763] gi|257841863|gb|EEV66300.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719] gi|257847596|gb|EEV71598.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299] gi|257851745|gb|EEV75679.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115] gi|257854746|gb|EEV77694.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300] gi|257856296|gb|EEV79205.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224] gi|257862635|gb|EEV85403.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937] gi|262076142|gb|ACY12115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED98] gi|282591216|gb|EFB96289.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102] gi|282763716|gb|EFC03844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117] gi|283471441|emb|CAQ50652.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ST398] gi|285817881|gb|ADC38368.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981] gi|294969840|gb|EFG45858.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819] gi|297178731|gb|EFH37976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796] gi|312830568|emb|CBX35410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129701|gb|EFT85692.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus CGS03] gi|329723462|gb|EGG59991.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus 21172] Length = 267 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|300867109|ref|ZP_07111775.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] gi|300334864|emb|CBN56941.1| tRNA pseudouridine synthase A [Oscillatoria sp. PCC 6506] Length = 265 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 109/247 (44%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y G+ GWQRQ + ++Q IE I V V +HGAGRTDSGVHA Q Sbjct: 1 MQRIALVIQYIGTDLHGWQRQPHQRTVQEEIETTISTVLQRPVTLHGAGRTDSGVHAAAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD LN+ L I I + V+ +HARFSA R Y Y + T Sbjct: 61 VAHFDAEGPVPAHRWQDILNSRL--PKDILIRASAKVEPTWHARFSATWRRYRYTLYTDP 118 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + AW + D ++ A L+GR F + + Sbjct: 119 VPNLFVRPFAWHYYHAPLDESLIQAALTPLIGRFHLAAFHRAGSSRPHSWVDVQVAECQR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 FG I I V A FL+ +R VG L VG G+ + + + + R+ AP GL Sbjct: 179 FGPFIHIEVQASGFLYGMMRLLVGLLVQVGRGERSLENFKDIWVQERREMVKYSAPAHGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLLRVGY 245 >gi|293388406|ref|ZP_06632914.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] gi|291082181|gb|EFE19144.1| tRNA pseudouridine synthase A [Enterococcus faecalis S613] Length = 280 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 35 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 94 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 95 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 152 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 153 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 212 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 213 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 272 Query: 240 YFDSVEY 246 + D V Y Sbjct: 273 FLDEVYY 279 >gi|294789610|ref|ZP_06754844.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] gi|294482411|gb|EFG30104.1| tRNA pseudouridine synthase A [Simonsiella muelleri ATCC 29453] Length = 261 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 142/246 (57%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + + YNGS ++GWQ+Q + ++Q ++E A+ ++ + + V AGRTD+GVHA Q Sbjct: 3 TRYVLTLAYNGSAFYGWQKQTADVPTVQSALEHALSVIAQQPIKVTAAGRTDTGVHATAQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + +++L+ V +FHARF A R Y Y + Sbjct: 63 VVHFDSDANRPISAWVRGVNAHL--PNDVAVLHAQAVASEFHARFDAFARRYRYVLQFAP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +LD N++ A Q L+G HDF++FR+ CQA SPI+T+ D+ + Sbjct: 121 VRSPLLVGRAGWTHYNLDINNIQAACQFLLGEHDFSSFRAAECQAKSPIKTMYSIDIQAM 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI++ A +FLH IR+ VG+L VG G+ + + + ++ + R + P P+GLY Sbjct: 181 GDLIKLDFHANAFLHHMIRNIVGALVYVGSGRLSVNEFAELIEKRSRLDAPPTFMPDGLY 240 Query: 241 FDSVEY 246 F +Y Sbjct: 241 FAGADY 246 >gi|302060553|ref|ZP_07252094.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato K40] Length = 284 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 18 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 78 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 136 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 195 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 196 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 255 Query: 242 DSVEY 246 VEY Sbjct: 256 VQVEY 260 >gi|296115065|ref|ZP_06833707.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] gi|295978402|gb|EFG85138.1| tRNA pseudouridine synthase A [Gluconacetobacter hansenii ATCC 23769] Length = 283 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 114/249 (45%), Positives = 154/249 (61%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSS-IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 R+ + IEY+G + GWQRQ +G + +QG +E A +TG V+ AGRTDSGVHA Sbjct: 29 RRWAVRIEYDGRDFVGWQRQASGLTSVQGVLEAAATRLTGGRPVISITAGRTDSGVHATG 88 Query: 60 QVAHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH D + + ALN ++K ++ ++ + ARFSAI RSY YRII Sbjct: 89 QVAHLDFPDDIPLSSTAVRDALNYHMKPHRVAILIARPVLP-NWSARFSAILRSYRYRII 147 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A L++GR W + + LD + MR AAQ L+GRHDFTTFR+ CQA SP+RT+D D+ Sbjct: 148 NRSARPTLDEGRVWHVRQPLDVDLMRQAAQFLIGRHDFTTFRASACQAKSPVRTLDRLDI 207 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G I I AR+FLH Q+R+ G+LK+VG+G W+ + +AL A DR+ GP AP E Sbjct: 208 HREGEEIVIVTEARAFLHHQVRNMTGTLKMVGEGSWSVERVGQALAACDRRAGGPTAPAE 267 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 268 GLYLTGVAY 276 >gi|308070945|ref|YP_003872550.1| tRNA pseudouridine synthase A [Paenibacillus polymyxa E681] gi|305860224|gb|ADM72012.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) [Paenibacillus polymyxa E681] Length = 261 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M CM + Y+G+ Y G+Q Q NG++IQ +E AI+ +TGE + + G+GRTD+GVHA Q Sbjct: 1 MRNLCMKVNYDGTHYDGFQTQPNGNTIQDCLEHAIYSLTGERLKITGSGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F C ALNA+L I + + V FHAR A R++Y Y I + Sbjct: 61 VFNFHTESPIPLQRWCLALNAWL--PRDIIVTDAREVPLSFHARRMAKRKTYRYSINANR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + P SLD M HLVG D+T+F S Q ++ +RTI + Sbjct: 119 FPDIFHRRTQVHHPTSLDVRAMEEGLAHLVGTFDYTSFASRRSQKTNHVRTIYEAYMTVD 178 Query: 181 GNL----------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + I + FL +R +G+L VG+GK +S D+ L+A++R + Sbjct: 179 HSFSRPDSDDQGIIHTYITGSGFLQHMVRIIMGTLLEVGEGKKSSDDIPSILEAKNRSKA 238 Query: 231 GPLAPPEGLYFDSVEY 246 GP A L +VEY Sbjct: 239 GPTAVGHALTLWNVEY 254 >gi|150008550|ref|YP_001303293.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] gi|255014350|ref|ZP_05286476.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_7] gi|166228743|sp|A6LDA7|TRUA_PARD8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|149936974|gb|ABR43671.1| tRNA pseudouridine synthase A [Parabacteroides distasonis ATCC 8503] Length = 252 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLM 60 Query: 61 VAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +AHFD ++ + LN L I++ + V + HARF A R+Y Y + T+ Sbjct: 61 IAHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTK 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P E +P LD E M A + L DFT+F +H + I H Sbjct: 119 KDPFNHELVY--KLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L Sbjct: 177 EGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVTY 243 >gi|299541963|ref|ZP_07052286.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] gi|298725701|gb|EFI66342.1| tRNA pseudouridine synthase A [Lysinibacillus fusiformis ZC1] Length = 246 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q +E+ + ++ GE V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAELERVLAIMHKGEQVKVTASGRTDAKVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I +L++ V FHAR+ + Y Y Sbjct: 61 QTLHFDTSLAIPAEKYRKALNVQL--PRDIRVLSVEEVAHDFHARYDVAGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + E M+ AA+ + G HDF+ F + + +RT+ Sbjct: 119 PIQSPFRRYYTVETNGVKPNVEAMQEAAKAITGTHDFSCFCAANTSVKDKVRTVTLLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG G+ ++ + + + +R + G APP+G Sbjct: 179 WHGEELHMVIEGNGFLYNMVRIIAGTLWEVGIGRRKVDNVSQVVASGNRDKAGKTAPPQG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEKVFY 246 >gi|330966232|gb|EGH66492.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 274 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|325199128|gb|ADY94584.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136] Length = 265 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWIRGVNAHL--PEGIAVLHARQVALEFHARFDAYGRHYRYLLESSP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 125 VRSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|269213866|ref|ZP_05983015.2| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] gi|269145225|gb|EEZ71643.1| tRNA pseudouridine synthase A [Neisseria cinerea ATCC 14685] Length = 277 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 19 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALENALAQIAGEAVSTIVAGRTDTGVHATAQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA L + I++L+ +FHARF A R Y Y + + Sbjct: 79 VVHFDTAAVRPAQAWIRGVNANL--PEGIAVLHAQQAAPEFHARFDAYGRHYRYLLESSP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K R LD E MR AA LVG DF++FR+ CQA SP++TI ++ Sbjct: 137 VRSPLLKHRVGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAECQAKSPVKTIYSAEIAYG 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 197 RGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVDGFAALIRERSRLKAPPTFMPDGLY 256 Query: 241 FDSVEY 246 ++Y Sbjct: 257 LTGIDY 262 >gi|240124428|ref|ZP_04737384.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268683056|ref|ZP_06149918.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] gi|268623340|gb|EEZ55740.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332] Length = 265 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme DSM 15981] Length = 250 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 130/248 (52%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y MI++Y+G+ Y GWQRQ N +IQG +E + + E + VHG+GRTD GVHA Q Sbjct: 1 MNYKMILQYDGTRYDGWQRQGNTDRTIQGKLEAVLGRLAEETLEVHGSGRTDGGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F L + P + LN YL + I +L L+ ++FH+R +A R++Y Y+I Sbjct: 61 VANFHLKQAREPEEIRAYLNRYL--PEDICVLELTAAPERFHSRLNACRKTYRYQIWMDG 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI--DHFDVN 178 ++ + + K LD M AA L+G HDF +F S +RTI Sbjct: 119 KTDVFQRDYFYGLGKQLDIGQMERAAGTLLGTHDFKSFCGNKKMKKSTVRTITAIRLIRL 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + V FL +R G+L VG GK + LE L+ ++R G APPEG Sbjct: 179 CDGKALAVDVTGNGFLQQMVRILAGTLIEVGLGKREADSLEAVLELKERSAAGFTAPPEG 238 Query: 239 LYFDSVEY 246 L +V+Y Sbjct: 239 LCLMNVQY 246 >gi|301309451|ref|ZP_07215393.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] gi|300832540|gb|EFK63168.1| tRNA pseudouridine synthase A [Bacteroides sp. 20_3] Length = 252 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLM 60 Query: 61 VAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +AHFD + + LN L I++ + V + HARF A R+Y Y I TR Sbjct: 61 IAHFDWEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYITTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P E +P LD E M A + L DFT+F +H + I H Sbjct: 119 KDPFNYELVY--KLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQ 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L Sbjct: 177 EGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHAL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLVDVTY 243 >gi|240118890|ref|ZP_04732952.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|240126753|ref|ZP_04739639.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268604599|ref|ZP_06138766.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268685331|ref|ZP_06152193.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] gi|268588730|gb|EEZ53406.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1] gi|268625615|gb|EEZ58015.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679] Length = 265 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|293398170|ref|ZP_06642375.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] gi|291611433|gb|EFF40503.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62] Length = 265 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAGCQAKSPVKTIYRAGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|257454808|ref|ZP_05620059.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] gi|257447741|gb|EEV22733.1| tRNA pseudouridine synthase A [Enhydrobacter aerosaccus SK60] Length = 268 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + IE+ G+ Y GWQRQ+ SIQ +E A+ + E + V AGRTD+GVHA +AH Sbjct: 6 YAISIEFIGTRYRGWQRQQEVDSIQQHVEAALSKIANEPIEVIAAGRTDAGVHASNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P +A N+ L D I++ + ++ +FHARFSAI R Y Y + Sbjct: 66 FQTSATRQPYNWLRAANSLL--PDDIAVRWIQVMPAEFHARFSAIARRYRYITLNHPFRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + L+ + M+ AA +L G HDFT+FR+ CQ++ P+R + + G L Sbjct: 124 AILNQQITHEYAPLNVQLMQQAATYLEGTHDFTSFRAASCQSNQPVRHVHFAKLIQHGEL 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L +G G+ +E L +++R A +GLYF + Sbjct: 184 LVLDIQADGFLHHMVRNIMGTLFEIGRGEKPVAWIEALLLSKNRSLAAATASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 ALY 246 >gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1] Length = 259 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 R + + Y+G+ Y G+Q Q+N +IQ ++ +AI ++TGE V V+ AGRTD+GVHA Sbjct: 4 RRLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F A+NA L ++++ V FH+RF A+ + Y Y I Sbjct: 64 QVVDFVTSSPIPDDRFPFAMNAIL--PPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNH 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + + L E M AAQ VG HDF F + +RT+ D+ Sbjct: 122 RIPSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCATGSPVKDFVRTVYRCDLTR 181 Query: 180 FGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + V+ FL+ IR G+L VG GK ++ + ++DR G APP+G Sbjct: 182 QEEHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAPPQG 241 Query: 239 LYFDSV 244 L V Sbjct: 242 LCLMKV 247 >gi|291533595|emb|CBL06708.1| pseudouridylate synthase I [Megamonas hypermegale ART12/1] Length = 256 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 73/251 (29%), Positives = 125/251 (49%), Gaps = 7/251 (2%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M+ + + Y+G+ Y G+QRQ ++Q +E A+F + G+ + + AGRTD+GV Sbjct: 8 MMKARRRNIKLTLSYDGTNYHGFQRQTKVVAVQNVLEGALFKLFGDSIELAAAGRTDAGV 67 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA+ QV +F + +A N L D I +L D+ F A S + Y+Y+ Sbjct: 68 HAIGQVVNFFTDGTIPIQNVVRAGNRLL--PDDIVLLKAEEADRDFSALHSVKSKIYIYK 125 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + W + K L+ E+M+ A +++ G HDF++FRS +SPIR I Sbjct: 126 VFENELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEHDFSSFRSAGGNDTSPIREIYEA 185 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N+ + FL+ +R+ +G + +G G+ ++ K ++A++R G +AP Sbjct: 186 SCTKENNVYTFKFWGSGFLYHMVRNIMGLMINIGLGRVDKHEVPKIIEAKNRALAGKMAP 245 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 246 ANGLYLQKVYY 256 >gi|238018655|ref|ZP_04599081.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] gi|237865126|gb|EEP66416.1| hypothetical protein VEIDISOL_00490 [Veillonella dispar ATCC 17748] Length = 261 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q + G ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLAGYQKQPDDKGLTVQGCLEYGLSKICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGSIPVENIPRAMIAH--IPKDIVVLEALEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L K W + K L+ + M+ A L+G HDFTT + + + P++TI V Sbjct: 119 QLIANPLTKRYHWHVKKPLNIDLMQAAGNELLGTHDFTTLKGTNSTPADPVKTIIGIHVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I VV FL+ +R+ G L VG G+ D++ L A+DR+ G AP +G Sbjct: 179 AEGSHVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LCLEEIFFT 247 >gi|315919940|ref|ZP_07916180.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] gi|313693815|gb|EFS30650.1| tRNA pseudouridine synthase A [Bacteroides sp. D2] Length = 260 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 114/240 (47%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V H RF A R+Y Y + T + + Sbjct: 61 ELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDAHVRFDATARTYKYYVTT--SKYPFNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEI 186 W + L+ E M AA L +DFT+F +H + I I H + + Sbjct: 117 QYRWRLYNQLNYERMNEAAHILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 >gi|220915529|ref|YP_002490833.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219953383|gb|ACL63767.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 245 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R +NA L + +L+ AR SA + Y Y I Sbjct: 61 VVSFPEERPLPVKAYVMGMNALLPPDVAVRAASLAPDGFD--ARRSARGKRYRYVIENLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-S 179 L + +AW L+ N+R AA HLVGRHDF F++ C +R + DV Sbjct: 119 TRAPLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVVGE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL Sbjct: 179 GGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|296315347|ref|ZP_06865288.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] gi|296837693|gb|EFH21631.1| tRNA pseudouridine synthase A [Neisseria polysaccharea ATCC 43768] Length = 267 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAVL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQA 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIQERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LTGVDY 252 >gi|309789641|ref|ZP_07684222.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] gi|308228377|gb|EFO82024.1| tRNA pseudouridine synthase A [Oscillochloris trichoides DG6] Length = 262 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+ + G Q Q G S+Q ++E+A +T E V+ AGRTD+GVHA+ Q Sbjct: 1 MRNIALRLAYDGTDFIGSQYQNQGRSVQEALEQAWEGLTQERRRVNLAGRTDAGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + +NA L ++I ++ VD FHAR SA RRSY Y I Sbjct: 61 VANIRTETRHSRRTILRGMNAKL--PPDVAIQAVAEVDPDFHARHSANRRSYRYLIDNNA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 A L + W + + LD M A L G HDF F ++ + S +RT Sbjct: 119 AWLPNLRNYVWFVEQPLDQAAMAEALVRLEGTHDFAAFTALVPEQRSTVRTCYTARLSSV 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +LI I + A +FL +R VG++ LVG GK T + L+ +DRK GP A Sbjct: 179 TMFDRHLIAIDLAANAFLQHMVRVIVGTVVLVGRGKITPDGFQAILEGRDRKAAGPTAVA 238 Query: 237 EGLYFDSVEY 246 GL SV Y Sbjct: 239 HGLTLVSVGY 248 >gi|237721333|ref|ZP_04551814.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] gi|229449129|gb|EEO54920.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_2_4] Length = 260 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 116/240 (48%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + Y+G+ Y GWQ Q NG S+Q + KA+ + V GAGRTD+GVHA VAHFD Sbjct: 1 MAYDGTNYHGWQIQPNGISVQECLMKALSTFLRREIEVIGAGRTDAGVHASLMVAHFDSD 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 + LN L ISI + V HARF A R+Y Y + T + + Sbjct: 61 ELLDTTSVTDKLNRLL--PPDISIYRVCRVRPDTHARFDATARTYKYYVTT--SKYPFNR 116 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-LIEI 186 W + L+ E M AA+ L +DFT+F +H + I I H + + Sbjct: 117 QYRWRLYNQLNYERMNEAARILFEYNDFTSFSKLHTDVKTNICHITHAEWTQEEDATWVF 176 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + A FL +R+ VG+L VG GK T + ++ QDR + G AP + L+ +VEY Sbjct: 177 TIRADRFLRNMVRAIVGTLIEVGRGKLTVEGFRRIIEQQDRCKAGTSAPGQALFLVNVEY 236 >gi|198283837|ref|YP_002220158.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666580|ref|YP_002426474.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248358|gb|ACH83951.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518793|gb|ACK79379.1| tRNA pseudouridine synthase A [Acidithiobacillus ferrooxidans ATCC 23270] Length = 271 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +EY+G+G+ GWQRQ + S+QG +E A+ V + V AGRTD+GVHAL QV Sbjct: 10 TRWALGLEYDGNGFCGWQRQLDQDSVQGVVEAALSRVAQCPISVVVAGRTDTGVHALCQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P + N L +++ +V FHARFSA R Y Y I+ R+ Sbjct: 70 VHFDSPVLRRPEAWVRGANTAL--PAGVALRWARVVPDSFHARFSATARRYRYVILNRRE 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + I LD E M+ AAQ L+G HDF+ FR+ CQA SP+R + V G Sbjct: 128 KSALWRNHTAWIYSPLDVEAMQAAAQTLLGTHDFSAFRAAACQAKSPVRNLCQLRVVRRG 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +LI + A FLH +R+ VG L +G + L ++DR G APP GLYF Sbjct: 188 DLIAVDAEANGFLHHMVRNLVGVLIAIGKADRPVDWAAEVLASRDRCRAGVTAPPGGLYF 247 Query: 242 DSVEY 246 + Y Sbjct: 248 VAPRY 252 >gi|226327923|ref|ZP_03803441.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] gi|225203627|gb|EEG85981.1| hypothetical protein PROPEN_01804 [Proteus penneri ATCC 35198] Length = 294 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + +EY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 27 KIALGVEYDGSRYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 86 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 87 HFETTAHRKDPAWTMGVNTHL--PADIAVRWVKTVADDFHARFSATARRYRYVIFNHRYR 144 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 145 PAILSSGVTHFHYPLDAERMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVSRYGD 204 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 205 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDITWMAELLALKDRTKAAATAKANGLYLV 264 Query: 243 SVEY 246 SV+Y Sbjct: 265 SVDY 268 >gi|313905811|ref|ZP_07839169.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] gi|313469325|gb|EFR64669.1| tRNA pseudouridine synthase A [Eubacterium cellulosolvens 6] Length = 252 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 113/250 (45%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 Y M I Y+G+ +FGW+ Q +IQG +E + + G + V V GAGRTD+GVH Sbjct: 3 KNYKMKISYDGTRFFGWEHQPKQEMTIQGKLETVLSRMVGAPEDQPVTVIGAGRTDAGVH 62 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A +A+ L + +N YL +++ L + + Y + Sbjct: 63 AKEMIANVLLDTRMSEEEIQTYMNRYLPEDISVNELKVCADRFHSRFKAKGKTYCYSFWY 122 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ ++ K + + MR AA+ +VG DF +F S +R +D + Sbjct: 123 ADGGVRPTFDRKYVTVLDKRPNVDRMRKAAEEIVGMRDFKSFCGNSHMKKSTVRLVDSIE 182 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G I I + FL +R G+L VG GK T + + ++A+DRK GP AP Sbjct: 183 FKIRGPYIRIYIHGSGFLQNMVRIIAGTLLEVGYGKRTPESIAELIEARDRKLAGPTAPA 242 Query: 237 EGLYFDSVEY 246 +GL V+Y Sbjct: 243 QGLCLIKVDY 252 >gi|269792760|ref|YP_003317664.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100395|gb|ACZ19382.1| tRNA pseudouridine synthase A [Thermanaerovibrio acidaminovorans DSM 6589] Length = 251 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 120/246 (48%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y GS + G+QRQ N ++QG++E+++ + GE V GAGRTD+GVHA Q Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ W L A+ A L + ++ L+ V FHARF A R Y Y + + Sbjct: 61 VVHFDMPSRWDLERLRLAIRARL--PRGLEVIRLAEVPGDFHARFDARWREYRYLVWNAR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + + LD +R A +GR DF F + +RT+ V F Sbjct: 119 WCYPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRF 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ A FL IR VG++ V G+ + L+ R G PP+GL+ Sbjct: 179 GHLLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLF 238 Query: 241 FDSVEY 246 F V Y Sbjct: 239 FWRVGY 244 >gi|73662003|ref|YP_300784.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761549|sp|Q49ZD7|TRUA_STAS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72494518|dbj|BAE17839.1| tRNA pseudouridine synthase A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 267 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q++G +IQ EK + + V +H + RTD GVHA+ Q Sbjct: 1 MRVLVNISYQGSQFLGFQIQQHGRTIQQQFEKILKRMHKHEVRIHPSSRTDRGVHAIEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + ++S V+ FH R+ + +SY Y+I Sbjct: 61 FHFDTELNIPEQQWQYAMNRAL--PDDIYVNDVSFVNDDFHCRYDCVGKSYRYKIYQSAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 G +P+ LD E M +AAQH +G HDFT F S + S IRT+ + Sbjct: 119 KDPFLCGLKTYVPEQLDIEKMNMAAQHFIGTHDFTGFCSQKTEVESKIRTLYESRIEKTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG GK ++ + L+A+DR + AP EGLY Sbjct: 179 SGFDYIVTGSGFLYNMVRVLIAFLIEVGKGKREPQEVPQLLEARDRNQVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|240129104|ref|ZP_04741765.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268687486|ref|ZP_06154348.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] gi|268627770|gb|EEZ60170.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035] Length = 265 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTTAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA L+G DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLIGEQDFSSFRAAECQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|160894208|ref|ZP_02074986.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] gi|156864241|gb|EDO57672.1| hypothetical protein CLOL250_01762 [Clostridium sp. L2-50] Length = 273 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I Y+G+ Y GW+ +K+ +IQG IE + L+ GE V ++GAGRTD+GVHA Sbjct: 25 MQNYRFLIAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAM 84 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + P + +N YL D I IL ++ ++FHARF+A + Y Y I + Sbjct: 85 VASGPVPTDKTPEEIRDYMNHYL--PDDICILEVTPAAERFHARFNAKGKHYRYTIYRGR 142 Query: 121 APLALEKGRAW--LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ W +++DCE MR AA +LVG HDF +F S +R + D+ Sbjct: 143 LKPVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIK 202 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + FL +R G+L VG G+ +E+ L + R+ GP APP+G Sbjct: 203 EDGDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQG 262 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 263 LCLMQVDY 270 >gi|240081654|ref|ZP_04726197.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268597753|ref|ZP_06131920.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] gi|268551541|gb|EEZ46560.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19] Length = 265 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDTAAVRPAQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|166367993|ref|YP_001660266.1| tRNA pseudouridine synthase A [Microcystis aeruginosa NIES-843] gi|166090366|dbj|BAG05074.1| tRNA pseudouridine synthase 1 [Microcystis aeruginosa NIES-843] Length = 276 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 117/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPDHRSVQEEIEKALADILGHDVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ P K LNA L D I I V ++HARFSA+ R Y Y + T P Sbjct: 68 HFEQQSPIPPSHWAKVLNARL--DDDIVIRASGRVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A + L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADVMARALKPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEYS 247 V Y+ Sbjct: 246 LRVGYA 251 >gi|307565293|ref|ZP_07627786.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] gi|307345962|gb|EFN91306.1| tRNA pseudouridine synthase A [Prevotella amnii CRIS 21A-A] Length = 257 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 13/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NGSS+Q ++EKA+ ++ + + + GAGRTD+GVHA Sbjct: 3 MQRYFITLSYDGNNYHGWQIQPNGSSVQETLEKALTILLRQPISIIGAGRTDTGVHARMM 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ ++ + + LN L IS+ ++ V HARFSAI+R+Y Y + ++ Sbjct: 63 VAHFDMKSKFDNMQISYRLNRLL--PHDISVSSIIPVSNDMHARFSAIKRTYHYYLHLQK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + D N + + T ++ Sbjct: 121 DIYNRQYSCYVGYNLNFDLMNEAALYLIGKKDFKCFCKTGADVKTTICNITEAYWKPIYP 180 Query: 181 -----------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + A FL +R+ VG+L VG GK + T + + R + Sbjct: 181 ELSTLSSTDIKPTNWCFIISANRFLRNMVRAIVGTLIAVGRGKMSITKFKTIVDTGSRSD 240 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ +EY Sbjct: 241 AGESMPGNALFLWDIEY 257 >gi|162533082|ref|YP_001621406.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213971672|ref|ZP_03399779.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|301386519|ref|ZP_07234937.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato Max13] gi|302134665|ref|ZP_07260655.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|118201619|gb|ABK79682.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato str. DC3000] gi|213923557|gb|EEB57145.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. tomato T1] gi|331019139|gb|EGH99195.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 274 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 123/245 (50%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLENALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E N L +S+ ++ FHARF AI R Y Y I Q Sbjct: 68 VHFDTQAERSLKAWVMGANINL--PHDVSVSWARVMPATFHARFKAIARRYRYVIYNDQI 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A + LD E M AA++LVG HDF+ FR+ CQA SPI+ + H V G Sbjct: 126 RPAHLNQEITWNHRPLDVERMAQAAEYLVGTHDFSAFRAGQCQAKSPIKQLHHLRVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I V A +FLH +R+ G L +G G+ L+++ R+ G A P GLY Sbjct: 186 KMIVIDVRANAFLHHMVRNIAGVLMTIGAGERPVEWARDVLESRVRRTGGVTAHPYGLYL 245 Query: 242 DSVEY 246 VEY Sbjct: 246 VQVEY 250 >gi|302379698|ref|ZP_07268183.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] gi|302312605|gb|EFK94601.1| tRNA pseudouridine synthase A [Finegoldia magna ACS-171-V-Col3] Length = 244 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + S I VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVK--SEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFSFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|333029910|ref|ZP_08457971.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] gi|332740507|gb|EGJ70989.1| tRNA pseudouridine synthase A [Bacteroides coprosuis DSM 18011] Length = 260 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 127/246 (51%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+GS Y GWQ Q NGSS+Q + A+ + + + V GAGRTD+GVHA + + Sbjct: 12 HRYFIYLSYDGSNYHGWQIQPNGSSVQECLMDALKMFLRKEIEVVGAGRTDAGVHAKQMI 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD R+ +C LN L I+I + V+K+ HARF A R+Y Y I TR Sbjct: 72 AHFDFERKLDVDKVCDKLNRIL--PHDIAIHKVIEVNKEAHARFDATARTYQYYITTR-- 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + A+ + +SLD M AAQ L DFT+F +H + + TI + Sbjct: 128 KDPFRRNYAYRLYQSLDILKMNEAAQILFEFEDFTSFSKLHSDTRTNLCTIMQAEWTEVD 187 Query: 182 NLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG GK + + K ++ QDR G P + L+ Sbjct: 188 EHTLVFTIQANRFLRNMVRAIVGTLIEVGRGKISLEEFRKIIEEQDRGLAGASVPGQALF 247 Query: 241 FDSVEY 246 +VEY Sbjct: 248 LIAVEY 253 >gi|313669058|ref|YP_004049342.1| tRNA pseudouridine synthase [Neisseria lactamica ST-640] gi|313006520|emb|CBN87984.1| tRNA pseudouridine synthase [Neisseria lactamica 020-06] Length = 267 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSALIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LTGVDY 252 >gi|315223896|ref|ZP_07865742.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] gi|314946125|gb|EFS98128.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea F0287] Length = 262 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 118/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHA + Sbjct: 13 MRYFIELSFFGKNYYGWQSQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHASQMY 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ ++ K LNA+L I+I ++ V HARF A++R+Y Y I TR Sbjct: 73 AHFDVTEALPANLVHK-LNAFL--PKDIAIHHIYEVQPNAHARFDALKRTYQYHISTR-- 127 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A A L+ M AA+ L DF F H + I + Sbjct: 128 KDAFAYDYAMAFTLPLNVALMNEAAEILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 187 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 188 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIIISKKRSKAGASVPACGLYL 247 Query: 242 DSVEY 246 +EY Sbjct: 248 THIEY 252 >gi|261380083|ref|ZP_05984656.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] gi|284797300|gb|EFC52647.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703] Length = 281 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q + ++Q ++E+A+ + GE + AGRTD+GVHA Q Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALTSIAGEQINTIVAGRTDTGVHATAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L D +++L V F+ARF A R Y Y + + Sbjct: 73 VVHFDTSVSRPEQAWVRGVNAHL--PDGVAVLLAQKVAPHFNARFDAYGRHYRYLLESSP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GR LD MR AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 VCSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPIKTLYRASISGT 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + +FLH +R+ +G+L VG G+ + + + A+ R + P +GLY Sbjct: 191 PRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFQSIFYARSRLKAPPTFMSDGLY 250 Query: 241 FDSVEY 246 V+Y Sbjct: 251 LTGVDY 256 >gi|303247874|ref|ZP_07334142.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] gi|302490775|gb|EFL50676.1| tRNA pseudouridine synthase A [Desulfovibrio fructosovorans JJ] Length = 265 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/253 (32%), Positives = 120/253 (47%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + + Y+G+ + GWQ Q G ++QG +E+A+ + GE VHGAGRTD+GVHA+ Sbjct: 1 MTRVRLTVAYDGTRFAGWQLQAPGMGRTVQGCLEEALARLCGEAARVHGAGRTDAGVHAV 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + +ALNA L D +S+++ ++V FHARF A + Y Y + T Sbjct: 61 AQVAHVDVPEARAGLPWQRALNALL--PDDVSVVDAAVVPPDFHARFDASGKIYQYTLWT 118 Query: 119 RQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID-- 173 R P LD M A G HDF F++ + R + Sbjct: 119 RPGSILPWRRPYVWDVGRFSPLDVAAMDACAALFAGYHDFAAFQNAGSSVKTSTRLVHGV 178 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + + R A FL +R+ +G+L VG GK D+ L R+ Sbjct: 179 SRLPQANSDEMVWRFHAEGFLKQMVRNLMGALVEVGRGKAAPEDIRSVLTLGQRRHAPRT 238 Query: 234 APPEGLYFDSVEY 246 AP GL +VEY Sbjct: 239 APAGGLCLMAVEY 251 >gi|255007737|ref|ZP_05279863.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 252 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 115/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA V Sbjct: 4 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMV 63 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E + + LN L IS+ + V HARF A R+Y Y I T Sbjct: 64 AHFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITT-- 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 120 VKYPFNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQE 179 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ QDR + G AP L Sbjct: 180 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNAL 239 Query: 240 YFDSVEY 246 + +VEY Sbjct: 240 FLVNVEY 246 >gi|33592579|ref|NP_880223.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|42559761|sp|Q7U363|TRUA_BORPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33572225|emb|CAE41775.1| tRNA pseudouridine synthase A [Bordetella pertussis Tohama I] gi|332381997|gb|AEE66844.1| tRNA pseudouridine synthase A [Bordetella pertussis CS] Length = 270 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 135/248 (54%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVHAL 58 M R + + Y+GS + GWQ Q +G ++Q +E A+ G V AGRTD+GVHA Sbjct: 1 MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H D + + +NA+L S + V + FHARFSA R+Y+Y + Sbjct: 61 MQVIHLDTDLQRRDESWVRGVNAFLPPSIVVQW--ARPVSEAFHARFSARSRTYVYLLWR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + AL GRA + LD MR AA+ L+G HDF++FRS CQA P+RT+ D++ Sbjct: 119 GRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRSSQCQARHPVRTLHRLDID 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + A +FLH +R+ +G+L VG G+ ++ L A+DR+ P P+G Sbjct: 179 ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALLCARDRRLGAPTFMPDG 238 Query: 239 LYFDSVEY 246 LY ++EY Sbjct: 239 LYLSAIEY 246 >gi|78780010|ref|YP_398122.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] gi|123768929|sp|Q318K9|TRUA_PROM9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78713509|gb|ABB50686.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9312] Length = 268 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQRQKN +++Q ++E+A+F +T ++V AGRTD+GVHA Q Sbjct: 1 MKRIALLVQYDGSNYSGWQRQKNATTVQETLERALFKITHQVVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF++ LN L I IL V +H+ +SA+ R Y Y I + Sbjct: 61 VVHFNIDCVIPANSYSDILNGLL--PSAIRILESVEVKDSWHSCYSAMYRHYRYVINNSK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + K LD M A++ + G HDF F+ Q + I I + ++ Sbjct: 119 FPNLFINNWSWHRYQKILDEVLMSNASKLMEGEHDFFAFQKSGSQRKNSITKIKNVEIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + Q + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDIWVNQKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|254412106|ref|ZP_05025881.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] gi|196181072|gb|EDX76061.1| tRNA pseudouridine synthase A [Microcoleus chthonoplastes PCC 7420] Length = 283 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ + ++Q IE+ + V G+ V +HGAGRTD+GVHA QV Sbjct: 10 QRIALVIQYLGTKFSGWQRQPHHRTVQAEIEQVLSTVEGKPVTLHGAGRTDTGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ R LN+ L + I I + V +HARFSAI R Y Y I T Sbjct: 70 AHFNSSRPIPGERWMPILNSRL--PEDILIRASAPVPANWHARFSAIWRRYRYSIYTDAC 127 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W + D ++ A L G+H F + T+ Sbjct: 128 PNLFVRPFCWHYYHAPLDEHRIQEALNPLWGKHHLAAFHRANSGRKHSWVTVQDTHCYRN 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FL+ +R VG L VG G + + Q R+ AP +GL Sbjct: 188 GSFIHIEIQADGFLYGMVRLLVGMLVEVGRGNLNPHEFTQLWVNQQRERIKYSAPAKGLC 247 Query: 241 FDSVEY 246 V Y Sbjct: 248 LLRVGY 253 >gi|256854698|ref|ZP_05560062.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] gi|256710258|gb|EEU25302.1| tRNA pseudouridine synthase [Enterococcus faecalis T8] Length = 246 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGASETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|262369979|ref|ZP_06063306.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] gi|262315018|gb|EEY96058.1| tRNA-pseudouridine synthase I [Acinetobacter johnsonii SH046] Length = 265 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G+ Y GWQ Q+ S+Q +IEK + + E + +HGAGRTD+GVHA Sbjct: 1 MQRFAIGIEFCGTHYRGWQTQQTGVISVQETIEKVLSKIANEPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D+ FHARF A R Y Y + Sbjct: 61 MVAHFDSSALRSERGWLMGSNSQL--PKDISIQWIKAMDQDFHARFKAQARRYRYVVYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + +LD M AAQ G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PQRPALMHKQVTHAYYALDVAKMMQAAQKFEGTHNFESFRAAACQSNQPVRHVSHCRLIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + +E A+DRK G APP+GL Sbjct: 179 HGPYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEVEHIEAIFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF +Y Sbjct: 239 YFIHADY 245 >gi|284036658|ref|YP_003386588.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815951|gb|ADB37789.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQRQ NG S+Q +E A+ V + + + G+GRTD+GVHA +Q Sbjct: 1 MRYFLHLAYKGTKYHGWQRQPNGLSVQEVLETALSTVLRQPIAIVGSGRTDAGVHAGQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +P L ++LN+ I I++ V HARF+A R Y Y+I + Sbjct: 61 AHFDTDV-ALPTQLLRSLNSM--IPPDIAVYECFPVRPDDHARFTAQSRYYQYQI--SRR 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-TIDHFDVNSF 180 +G ++ L+ E M AA L+ DF +F + + + Sbjct: 116 KDPFREGLVYVFTLPLNVELMNEAASRLLHHIDFESFSKVKTDVKTFNCQIEWAYWAQQP 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FLH +R+ VG+L VG + + TD E+ + DRK G AP EGL Sbjct: 176 NGDLVFHIKANRFLHGMVRAIVGTLLAVGQERLSVTDFEQIILDHDRKRAGRAAPAEGLS 235 Query: 241 FDSVEY 246 V Y Sbjct: 236 LVEVGY 241 >gi|261401977|ref|ZP_05988102.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] gi|269207832|gb|EEZ74287.1| tRNA pseudouridine synthase A [Neisseria lactamica ATCC 23970] Length = 267 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGESVATTVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTSPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LTGVDY 252 >gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1] gi|238690561|sp|B5RLM0|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238690579|sp|B5RQJ5|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly] gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1] Length = 245 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + V + AGRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSLYHGFQIQPTKPTIQGEIEKALEKINKTKVKIQSAGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ L + I I+ L V +F RF A +R Y Y I+ + Sbjct: 61 IISFYIKININLKNLKTAINSLL--KNDIRIIKLKYVSNEFQPRFHAKKRKYTYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I Sbjct: 119 NHYPWEEYQAYYVRKKLNINRLNTMAEMLIGLHDFTTFSCIRDQTNSKLKEIYLAKFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I ++ SFL +RS VG++ + + K L++++RK AP + L+ Sbjct: 179 NKFIVFEIIGSSFLWKMVRSIVGTMIDIEIKNESVDTFIKILKSKNRKYARTTAPAKALF 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDRVFY 244 >gi|227517362|ref|ZP_03947411.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] gi|227075232|gb|EEI13195.1| tRNA-pseudouridine synthase I [Enterococcus faecalis TX0104] Length = 277 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 32 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 91 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 92 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 149 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 150 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 210 DGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 269 Query: 240 YFDSVEY 246 + D V Y Sbjct: 270 FLDEVYY 276 >gi|189461835|ref|ZP_03010620.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] gi|189431429|gb|EDV00414.1| hypothetical protein BACCOP_02501 [Bacteroides coprocola DSM 17136] Length = 252 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 M RY + + Y+G+ Y GWQ Q NG+S+Q ++ +A+ + + V GAGRTD+GVHA Sbjct: 1 MFRYFIYLAYDGANYHGWQIQPNGNSVQETLTRALITFLRDDAIEVTGAGRTDAGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD+ R + LN L IS+ + V + H RF A R+Y Y I TR Sbjct: 61 MVAHFDIERMLDCDSVTDKLNRLL--PPDISVYQVRRVRQDAHTRFDATYRTYKYYITTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVN 178 + + AW + +SLD + M AA+ L DFT+F +H + R + Sbjct: 119 K--DPFNRNYAWRVFQSLDFDKMNEAAKVLFEYTDFTSFSKLHTDVKTNNCRIMHARWEQ 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + A FL +R+ VG+L VG GK T K ++ ++R G P Sbjct: 177 IGEDEWVFTIQADRFLRNMVRAVVGTLVEVGRGKLTVEGFRKVIEEKNRCSAGTSVPGHA 236 Query: 239 LYFDSVEY 246 L+ + Y Sbjct: 237 LFLVDIGY 244 >gi|169824810|ref|YP_001692421.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] gi|238687759|sp|B0S2E1|TRUA_FINM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167831615|dbj|BAG08531.1| tRNA pseudouridine synthase A [Finegoldia magna ATCC 29328] Length = 244 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + S I +D FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVK--SEEMDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+G+HDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLY 238 Query: 241 FDSVEY 246 +EY Sbjct: 239 LMDIEY 244 >gi|229548121|ref|ZP_04436846.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257091270|ref|ZP_05585631.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257417169|ref|ZP_05594163.1| tRNA pseudouridine synthase [Enterococcus faecalis AR01/DG] gi|300861430|ref|ZP_07107514.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|312905329|ref|ZP_07764444.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|229306807|gb|EEN72803.1| tRNA-pseudouridine synthase I [Enterococcus faecalis ATCC 29200] gi|257000082|gb|EEU86602.1| tRNA pseudouridine synthase [Enterococcus faecalis CH188] gi|257158997|gb|EEU88957.1| tRNA pseudouridine synthase [Enterococcus faecalis ARO1/DG] gi|295114364|emb|CBL33001.1| pseudouridylate synthase I [Enterococcus sp. 7L76] gi|300848891|gb|EFK76644.1| tRNA pseudouridine synthase A [Enterococcus faecalis TUSoD Ef11] gi|310631353|gb|EFQ14636.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0635] gi|315145838|gb|EFT89854.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX2141] gi|315162508|gb|EFU06525.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0645] gi|315578608|gb|EFU90799.1| tRNA pseudouridine synthase A [Enterococcus faecalis TX0630] Length = 246 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|194366624|ref|YP_002029234.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] gi|238693473|sp|B4SQV6|TRUA_STRM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194349428|gb|ACF52551.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia R551-3] Length = 256 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L S + V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWMLGTTTRLPRSIAVRWCV--PVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ALE+ ++LD M IA Q L+G +DF FRS+ CQA R + V+ Sbjct: 119 VRPALERQTLSWERRALDETRMHIAGQALLGENDFNAFRSVQCQALHARRELQSLQVSRH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVSVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FLGPLY 244 >gi|256820760|ref|YP_003142039.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] gi|256582343|gb|ACU93478.1| tRNA pseudouridine synthase A [Capnocytophaga ochracea DSM 7271] Length = 250 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + + G Y+GWQ Q S+Q ++KA+ + + V GAGRTDSGVHAL+ Sbjct: 1 MRYFIELSFFGKNYYGWQFQPKAISVQEVLQKALSTLLRTPIEVVGAGRTDSGVHALQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ ++ K LNA+L I++ ++ V HARF A++R+Y Y I T+ Sbjct: 61 AHFDVTEALPANLVHK-LNAFL--PKDIAVHHIYEVQPNAHARFDALKRTYQYHISTQ-- 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A A + L+ M AAQ L DF F H + I + Sbjct: 116 KDAFAYDYAMALTLPLNVALMNEAAQILFDYTDFQCFSKTHTDVKTYNCKIYEAHWDKVE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + A FL +R+ VG+L VG K + TD E + ++ R + G P GLY Sbjct: 176 NQLIFTITADRFLRNMVRAIVGTLIDVGLQKLSLTDFEDIILSKKRSKAGASVPACGLYL 235 Query: 242 DSVEY 246 +EY Sbjct: 236 THIEY 240 >gi|240000017|ref|ZP_04719941.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268595826|ref|ZP_06129993.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] gi|268549215|gb|EEZ44633.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02] Length = 265 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQAALETALARIAGESVATTVAGRTDTGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ + +NA+L + I++L+ V FHARF A R Y Y + + Sbjct: 67 VVHFDITAARPQQAWVRGVNAHL--PEGIAVLHARQVAPGFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAALLVGEQDFSSFRAAGCQAKSPVKTIYRTGLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|317126894|ref|YP_004093176.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] gi|315471842|gb|ADU28445.1| tRNA pseudouridine synthase A [Bacillus cellulosilyticus DSM 2522] Length = 260 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRTDSGVHALR 59 M R I+ Y+G+ Y G+Q Q + +IQ +EKA+ + V +GRTD+GVH+L Sbjct: 1 MKRVKGIVTYDGTKYSGYQVQVDKKTIQAELEKALAKIHKADSWNVVSSGRTDTGVHSLG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD +A N L D I + +L V FHARF ++ + Y+Y++ T Sbjct: 61 QTIHFDTSLSIPEERWPQAFNRLL--PDDIQVRDLQYVHHDFHARFDSVGKKYVYKVNTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + P L E M AA HL G HDFT+F S +RTI ++ Sbjct: 119 REKDIFKRNFVYHHPYVLSYEKMLEAAMHLEGTHDFTSFSSPRTDVIDKVRTIYAIELEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + FL+ +R G+L VG GK ++ + + +DR GP P GL Sbjct: 179 NGDEWTFTYIGNGFLYQMVRVLTGTLLHVGKGKIRPEEIPEIFEGKDRSLAGPSIPGTGL 238 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 239 YLTNVYY 245 >gi|254670107|emb|CBA05050.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha153] gi|319409652|emb|CBY89952.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA pseudouridylate synthase I) [Neisseria meningitidis WUE 2594] gi|325201326|gb|ADY96780.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240149] gi|325208888|gb|ADZ04340.1| tRNA pseudouridine synthase A [Neisseria meningitidis NZ-05/33] Length = 265 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQAGGVPTVQTALETALAQIAGEFVATTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA+L + I++L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWVRGVNAHL--PEGIAVLHARQVAPEFHARFDAYGRHYRYLLESAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD E MR AA +L+G DF++FR+ CQA SP++TI D+ Sbjct: 125 VRSPLLKNRAGWTHLKLDIEPMRRAAAYLIGEQDFSSFRAAECQAKSPVKTIYRADLTQS 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 185 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 244 Query: 241 FDSVEY 246 V+Y Sbjct: 245 LTGVDY 250 >gi|313145437|ref|ZP_07807630.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] gi|313134204|gb|EFR51564.1| tRNA pseudouridine synthase A [Bacteroides fragilis 3_1_12] Length = 255 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 115/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q NG SIQ + KA+ V GAGRTD+GVHA V Sbjct: 7 QRYFIYLAYDGTHYHGWQIQPNGISIQECLMKALATFLRRDTEVIGAGRTDAGVHASLMV 66 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E + + LN L IS+ + V HARF A R+Y Y I T Sbjct: 67 AHFDYEGEVLDTDKVTEKLNRLL--PQDISVYKVCRVRPDAHARFDATARTYKYYITT-- 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + M AA L DFT+F +H + I I H + Sbjct: 123 VKYPFNRQYRYRIHNPLDFQKMNEAALTLFHYTDFTSFSKLHTDVKTNICKIMHAEWTQE 182 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG GK + + ++ QDR + G AP L Sbjct: 183 DEYTWVFTIQADRFLRNMVRAIVGTLLEVGRGKLSVDGFRRIIEQQDRCKAGTSAPGNAL 242 Query: 240 YFDSVEY 246 + +VEY Sbjct: 243 FLVNVEY 249 >gi|294792824|ref|ZP_06757971.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] gi|294456723|gb|EFG25086.1| tRNA pseudouridine synthase A [Veillonella sp. 6_1_27] Length = 261 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYIYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K L+ M+ A LVG HDFTT + + ++ P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTSADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LCLEEIFFT 247 >gi|309378319|emb|CBX23065.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 267 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 9 QRWALTLSYDGSRFYGWQKQAGGVPTVQTALEDALAQIAGEAVSTIVAGRTDTGVHATAQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + NA L + I++L+ FHARF A R Y Y + + Sbjct: 69 VVHFDTAARRPAQAWIRGTNAAL--PEGIAVLHARQTAPGFHARFDAYGRHYRYLLESSP 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA LVG DF++FR+ CQA SP++TI + Sbjct: 127 VRSPLLKNRAGWTHLKLDIGPMRQAAALLVGEQDFSSFRAAECQAKSPVKTIYSATLAQT 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + +FLH +R+ +G+L VG G+ + ++ + R + P P+GLY Sbjct: 187 GGLIRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFSTLIRERSRLKAPPTFMPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LTGVDY 252 >gi|116334238|ref|YP_795765.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367] gi|122269080|sp|Q03PY8|TRUA_LACBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116099585|gb|ABJ64734.1| Pseudouridylate synthase [Lactobacillus brevis ATCC 367] Length = 265 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 M RY + + Y+G+ + G+QRQ N +++ ++ + + + +V++G+GRTD+GVHA Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV HFD + K LN+ L + +L + V FHAR+ + Y YR+ Sbjct: 61 LAQVVHFDFPFLIPADNMRKGLNSML--PMDMEVLKVEEVAPTFHARYDVSGKQYQYRMD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + ++ +D + +A LVG HD+T+F + Q + +RTI Sbjct: 119 MGEFRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEATC 178 Query: 178 NSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + E F++ Q+R VG L +G G D+ + + +DRK+ P Sbjct: 179 HIDEANHELVFEFYGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVP 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 AAGLYLKHVYY 249 >gi|256841433|ref|ZP_05546940.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] gi|256737276|gb|EEU50603.1| tRNA pseudouridine synthase A [Parabacteroides sp. D13] Length = 265 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ + V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRKPVPIVGAGRTDAGVHARLMI 74 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD ++ + LN L I++ + V + HARF A R+Y Y + T++ Sbjct: 75 AHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E +P LD E M A + L DFT+F +H + I H D Sbjct: 133 DPFNHELVY--KLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHADWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEY 246 V Y Sbjct: 251 LVDVTY 256 >gi|289550174|ref|YP_003471078.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] gi|289179706|gb|ADC86951.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis HKU09-01] Length = 267 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADSQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIEVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|302333855|gb|ADL24048.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus JKD6159] Length = 267 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFKGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R + L VG G+ +D+ K L++++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLLAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|313892355|ref|ZP_07825947.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|329121372|ref|ZP_08249998.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] gi|313119214|gb|EFR42414.1| tRNA pseudouridine synthase A [Dialister microaerophilus UPII 345-E] gi|327469781|gb|EGF15247.1| tRNA pseudouridine synthase A [Dialister micraerophilus DSM 19965] Length = 266 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + Y+G+ Y G+QRQ+NG ++Q ++EK + +TG ++ RTD+GVHA Q Sbjct: 1 MRNIWITVSYDGTEYAGFQRQENGFTVQEALEKVLKKLTGVHTTIYFVARTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F A+N+ L I +L + + F R + ++Y Y + + Sbjct: 61 ECTFYTESSIPSERFKNAMNSLL--PCDIRVLKSKEMYEDFSVRKTNYGKTYAYILSEDK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + W + LD + M+ A+ L G+HDFT+FR + + P+R I+ + Sbjct: 119 DINPFLRKYVWYTGRKLDLQKMKEVAKVLEGKHDFTSFRGNNSVPADPVRFINEVRIIRK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LI + V FL+ +R+ VG+ G G T +++ L+A+DRK+ G APP+GL Sbjct: 179 NSLIFVYVTGEGFLYHMVRNMVGAFVDAGRGIMTPERIKEILKAKDRKKLGVTAPPQGLA 238 Query: 241 FDSVEY 246 V + Sbjct: 239 LLKVYF 244 >gi|258545708|ref|ZP_05705942.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] gi|258519078|gb|EEV87937.1| tRNA pseudouridine synthase A [Cardiobacterium hominis ATCC 15826] Length = 265 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + +EY+G+ Y GWQRQ ++IQ +E A+ V V AGRTD+GVHA Q Sbjct: 3 TRYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD N YL I + + V +FHAR+SA R Y Y I R Sbjct: 63 VIHFDTGAARSDFAWLAGANRYL--PADIRLQWIRAVPAEFHARYSARERHYRYLIRHRA 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P AL R KSLD M AAQ L+G HDF+ FR+ CQA SP R I DV Sbjct: 121 QPSALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRER 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +FLH +R+ VG+L VGDG+ + + L ++DR+ G AP +GLY Sbjct: 181 HGWIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLY 240 Query: 241 FDSVEY 246 F V Y Sbjct: 241 FHGVAY 246 >gi|297568336|ref|YP_003689680.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] gi|296924251|gb|ADH85061.1| tRNA pseudouridine synthase A [Desulfurivibrio alkaliphilus AHT2] Length = 252 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 112/255 (43%), Gaps = 12/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + I Y+G+ + GWQRQ N +IQ +E+A+ + GE VV+HGAGRTD+GVHAL Sbjct: 1 MVKVKLTIAYDGTDFAGWQRQLNRPTIQAVVEEALARMLGEQVVLHGAGRTDAGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F+ R LN+ L I I+ FHARFSA + Y Y T Sbjct: 61 VASFNAPRRLPLAAYRLGLNSML--PPAIRIMAADEAADDFHARFSAKGKLYRYCFSTAA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----- 175 + +P E +R ++G HDF+TF + + Sbjct: 119 VMPPCRRLYRAHLPGPFAAERVRQLLPQMLGEHDFSTFEAAGSRDRDRAGGRGGVRRLNL 178 Query: 176 ----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + G + FL +R+ VG+L +G G+ + L +DR G Sbjct: 179 LQLEQEDPAGQEFCFELGGDGFLRHMVRNIVGTLVAIGQGR-PLAEPVALLVGRDRARAG 237 Query: 232 PLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 238 PTAPACGLTLVKVIY 252 >gi|163847952|ref|YP_001635996.1| tRNA pseudouridine synthase ACD [Chloroflexus aurantiacus J-10-fl] gi|222525832|ref|YP_002570303.1| tRNA pseudouridine synthase ACD [Chloroflexus sp. Y-400-fl] gi|189030130|sp|A9WH95|TRUA_CHLAA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|254789612|sp|B9LJG1|TRUA_CHLSY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|163669241|gb|ABY35607.1| tRNA pseudouridine synthase A [Chloroflexus aurantiacus J-10-fl] gi|222449711|gb|ACM53977.1| tRNA pseudouridine synthase A [Chloroflexus sp. Y-400-fl] Length = 278 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+G+ + G Q Q + ++QG++E A +T E + AGRTD+GVHA Q Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH + + LNA+L ++I N+ FHARFSAI+R Y Y I Sbjct: 61 VAHVQTTTRHNLQTIWRGLNAHL--PVDLAIQNVGEAVPDFHARFSAIQREYRYLIDCAA 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 APL + + +LD M A + L G HDF F + S +RT+ Sbjct: 119 APLPQLRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYWTRVGDY 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I V A +FL +R VG+L LVG G+ T + L ++DR+ GP AP Sbjct: 179 EWFERRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPA 238 Query: 237 EGLYFDSVEY 246 GL +V Y Sbjct: 239 HGLTLTAVRY 248 >gi|78045100|ref|YP_361085.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] gi|77997215|gb|ABB16114.1| tRNA pseudouridine synthase A [Carboxydothermus hydrogenoformans Z-2901] Length = 246 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 123/246 (50%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + I Y+G+ + G+Q+QKN +IQG +E+ + + E V V GAGRTD+GVHAL Q Sbjct: 5 PNFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + + LN L I +L IV FHAR+SA ++ Y Y + Sbjct: 65 VVNFSAPWKAPVDKIPEILNNTL--PTAIRVLEAEIVPDDFHARYSARKKEYRYYLY-YG 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW +P+ LD E + A ++L+G HDF+ F + +PI+T+ Sbjct: 122 PPSPFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMFEASYRED 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L VA SFL+ R G+L +G + + L ++K G AP GL+ Sbjct: 182 GFLGYFTFVADSFLYKMARILTGTLVEIGLNGH-PERVREILTTGNKKLAGKTAPAHGLF 240 Query: 241 FDSVEY 246 V Y Sbjct: 241 LVKVFY 246 >gi|73541994|ref|YP_296514.1| tRNA pseudouridine synthase A [Ralstonia eutropha JMP134] gi|123774054|sp|Q46YW3|TRUA_RALEJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72119407|gb|AAZ61670.1| tRNA pseudouridine synthase [Ralstonia eutropha JMP134] Length = 273 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 88/250 (35%), Positives = 137/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E +I G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIAIGLHYDGAAFSGWQSQPHRNTVQDYLEDSIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D + + +NA+L S + VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTTLDRTTFSWVRGINAFLPPSIALQW--ARPVDESFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA + + LD + M+ A++ L+G DF++FR+ CQA SP++T+ Sbjct: 119 HRVPLAHGRAGYLMLPPGQRLDVDAMQAASRCLLGEQDFSSFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + GN + +R A +FLH +R+ +G L VG G++ L + L A+DRK P P Sbjct: 179 LKADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPPEWLAEVLAARDRKLAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 239 DGLYLADVKY 248 >gi|298209267|ref|YP_003717446.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83849194|gb|EAP87063.1| putative tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 258 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 115/245 (46%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y G+QRQ S+Q +E AI + + V + GAGRTD+GVH + + Sbjct: 1 MRYFLDIAYNGKPYHGFQRQPEDISVQEVLEDAIAVYFQKAVTIFGAGRTDTGVHGKQLI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD LN L S + + L V+ + HARF A+ R Y Y + TR Sbjct: 61 AHFDSDTTINESQFLYKLNKLLPDSVAVRDVYL--VNSEAHARFDAMAREYEYVVTTR-- 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A I K LD E M AA+ L+ DF F + + I + + G Sbjct: 117 KDPFLSESALYIIKPLDVEAMNTAAKVLLEYTDFECFSKVKTDVKTFNCKITYAHWSQHG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A FL +R+ VG+L VG GK + + +++R E G +GLY Sbjct: 177 HKLVFTIRADRFLRNMVRAIVGTLLEVGLGKRLPGSIHDIIASKNRGEAGKSVAAQGLYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 TKVLY 241 >gi|150025482|ref|YP_001296308.1| tRNA pseudouridine synthase A [Flavobacterium psychrophilum JIP02/86] gi|149772023|emb|CAL43499.1| tRNA-pseudouridine synthase I [Flavobacterium psychrophilum JIP02/86] Length = 250 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + YNG+ Y GWQ Q N +S+Q ++ K + E + + GAGRTD+GVHA + Sbjct: 1 MRYFIEFAYNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N++L I I N+ V Q HARF A R+Y Y I T + Sbjct: 61 GHFDTDISIDNAKFIHKANSFL--PKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AW K +D M AA+ L+ DF F + ++ I + Sbjct: 119 --VFTNNLAWYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG+L +G K T + + +++Q+R+ G P GL+ Sbjct: 177 EQLIFTITADRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSVPAHGLFL 236 Query: 242 DSVEY 246 ++EY Sbjct: 237 TNIEY 241 >gi|89055953|ref|YP_511404.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] gi|123400973|sp|Q28LN3|TRUA_JANSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|88865502|gb|ABD56379.1| tRNA pseudouridine synthase A [Jannaschia sp. CCS1] Length = 261 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 120/250 (48%), Positives = 159/250 (63%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY IEY+G + GWQRQ + S+QG++E A+ + ++ + AGRTD+GVHAL Q Sbjct: 1 MPRYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK ++I + FHARFSA RSY YR+I R+ Sbjct: 61 VAHADMQRDWDPFRLAEALNYHLK-PAPVAITACARAHDDFHARFSATWRSYTYRMICRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +G AW + +LD M A+HL+G+HDFTTFR+ HCQA SPI+T+D V Sbjct: 120 APLVHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEV 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 I + A+SFLH Q+RS VGSL+ VG G W D+ +AL+A DR ECG +APP Sbjct: 180 SLPAGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 DGLYMTGVGY 249 >gi|283781972|ref|YP_003372727.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] gi|283440425|gb|ADB18867.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068] Length = 285 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q N ++Q +EKA+ +TG +GRTD+GVHAL Q Sbjct: 1 MRTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F P L K LNA K+ D I I ++ V FH A+R+ Y Y + Sbjct: 61 VAAFSSETGIDPAGLLKGLNA--KVPDDIFIFDVVEVPLAFHPIRDAVRKRYRYVVQDGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 ++ AW + + LD + M A++ L+G HDF +F++ + R + V Sbjct: 119 LRDIFDRQYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVERV 178 Query: 180 ---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + V A FL +R+ VG+L VG G + L+++DR+ G AP Sbjct: 179 DGARTSRVHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTAPA 238 Query: 237 EGLYFDSVEY 246 +GL+ V Y Sbjct: 239 QGLFMIGVHY 248 >gi|219849858|ref|YP_002464291.1| tRNA pseudouridine synthase ACD [Chloroflexus aggregans DSM 9485] gi|254789611|sp|B8G6P6|TRUA_CHLAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219544117|gb|ACL25855.1| tRNA pseudouridine synthase A [Chloroflexus aggregans DSM 9485] Length = 278 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+G+ + G Q Q + ++QG+IE A +T E + AGRTD+GVHA Q Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGAIEAAWEALTQEQRRIVLAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH + + LNA+L +++ N+ + FHAR+SAI R Y Y I Sbjct: 61 VAHVQTATRHSLATIWRGLNAHL--PTDVTVQNVGEAVRDFHARYSAIEREYRYLIDCAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 PL + +A +LD M A + L G HDF F + S +RT+ + Sbjct: 119 VPLPQLRHQALHYAGTLDVTAMATALKLLEGTHDFAAFTTATPSQRSTVRTMYWTRIVER 178 Query: 178 -NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L+ I + A +FL +R VG+L LVG G+ T + L +DR+ GP AP Sbjct: 179 VWFDRRLLAIELAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLAGRDRRLAGPTAPA 238 Query: 237 EGLYFDSVEY 246 GL +V Y Sbjct: 239 HGLTLTAVRY 248 >gi|303234561|ref|ZP_07321198.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] gi|302494395|gb|EFL54164.1| tRNA pseudouridine synthase A [Finegoldia magna BVS033A4] Length = 244 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++Y+GS ++GWQ+ + S+Q IEKA+ + + V ++GAGRTD GVHA Q Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +N + S I VD FHARFSA ++Y Y + + Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVK--SEEVDLDFHARFSAKSKTYKYILCNKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD + + L+GRHDFT+F + + +P+RTID + Sbjct: 119 YMEPWFNDYKGHRKYYLDFDLLLKCRDMLIGRHDFTSFVNDLEEDINPVRTIDEITIEKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I A SFL +R VGS+ V G+ + L+ AL+ +DR+ G P GLY Sbjct: 179 DDDIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPCGLY 238 Query: 241 FDSVEY 246 ++EY Sbjct: 239 LMNIEY 244 >gi|295425622|ref|ZP_06818309.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] gi|295064638|gb|EFG55559.1| tRNA pseudouridine synthase A [Lactobacillus amylolyticus DSM 11664] Length = 262 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M++ Y+G + G+Q Q N ++QG++E+A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMLMAYDGHLFHGFQVQPNQRTVQGTVEEALKKMTKGKRVIVEGSGRTDAGVHAMGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD +P + ALN+ + I I FH R+S + Y YR+ Sbjct: 63 VIQFDYPGNRIPAEKMILALNSM--MPMDIIFKECEIASPDFHVRYSIKGKWYRYRMSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DV 177 ++ P +D M+ AA+ L+G+HDFT+F + Q + +RT+ + + Sbjct: 121 HFVNPFKRFYTGHYPYPIDVSKMKEAAKDLLGKHDFTSFAASGGQIKNKVRTMYYVNVEK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N N + + FL+ +R V +L +G GK D + ++A+DR + AP Sbjct: 181 NESQNELVFDFICSGFLYNMVRILVATLLEIGSGKRPVHDFPRIIKAKDRLQVTQTAPAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|257417873|ref|ZP_05594867.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] gi|257159701|gb|EEU89661.1| tRNA pseudouridine synthase [Enterococcus faecalis T11] Length = 246 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR N +IQG IE + +TGE++ + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGELIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + ++ + ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSSLTTTEMLSFLNRYL--PGDIVVKEVTEMPERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P A E+ ++ PK+LD E M A Q L+G HDF F ++ S RTI+ + Sbjct: 119 PIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G +++ V FLH +R VG+L +G G +++ + R+ G AP +GL Sbjct: 179 NGEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|299771694|ref|YP_003733720.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] gi|298701782|gb|ADI92347.1| tRNA pseudouridine synthase A [Acinetobacter sp. DR1] Length = 265 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANSQL--PKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVKKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIEADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCNY 245 >gi|227356152|ref|ZP_03840541.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] gi|227163616|gb|EEI48532.1| tRNA pseudouridine synthase A [Proteus mirabilis ATCC 29906] Length = 289 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 27 KIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 86 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 87 HFETTAHRKDAAWTMGVNTHL--PQDIAVRWVKTVANDFHARFSATARRYRYVIFNHRYR 144 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 145 PAILSSGVTHFHYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRYGD 204 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 205 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLYLV 264 Query: 243 SVEY 246 SV+Y Sbjct: 265 SVDY 268 >gi|242277723|ref|YP_002989852.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] gi|259550311|sp|C6BW69|TRUA_DESAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242120617|gb|ACS78313.1| tRNA pseudouridine synthase A [Desulfovibrio salexigens DSM 2638] Length = 271 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 131/248 (52%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +II Y+G+ + GWQ Q ++QG +EKAI +TG V VHG+GRTDSGVHAL Q Sbjct: 1 MQRIKLIIAYDGTNFCGWQLQPKLRTVQGDLEKAITRITGTTVRVHGSGRTDSGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ + V +ALN+ L D ++IL+ +V +FH+R+SAIR++Y Y + Sbjct: 61 VAHFDVDSCFASVKWQRALNSLL--PDDVTILDAQLVSPEFHSRYSAIRKTYTYTLWLEN 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + LD + Q+ +G HDF++F++ + S +RTI F Sbjct: 119 SFFLPWRRHYVWKCGPLDFCALDQGMQYFLGEHDFSSFQNTGTEIKSTVRTIHEFKRYPG 178 Query: 181 GNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 E+ V FL +R+ VG L +G GK + LQ +DR AP +G Sbjct: 179 QTEQEMILEVCGSGFLKQMVRNMVGCLVRIGRGKAEPETVRSLLQMKDRTAAPATAPAQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCMAGVYY 246 >gi|300173999|ref|YP_003773165.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] gi|299888378|emb|CBL92346.1| tRNA pseudouridine synthase A [Leuconostoc gasicomitatum LMG 18811] Length = 255 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 88/256 (34%), Positives = 131/256 (51%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEI---VVVHGAGRTD 52 M RY I+ Y+GS +FG+Q Q KNG ++QG + KA+ + + V GA RTD Sbjct: 1 MPRYKAIVSYDGSDFFGFQVQTKNGVERQRTVQGELNKAVNQMAKNPTPAIKVVGASRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 +GVHA QV HFDL + + + K LN L I I ++ V FHARF+ + Y Sbjct: 61 TGVHAFGQVVHFDLPFDINVIGVRKGLNTLL--PKDIIIQSVDQVANDFHARFNTHAKRY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +YR+ T+ ++ LD E ++IA L+G HDF +F + Q + IRTI Sbjct: 119 VYRVSTQDFTDPFKRFYTGHFQWQLDVERIKIALPDLLGEHDFASFAASGNQTITTIRTI 178 Query: 173 DHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 D+ + E +FL+ QIR VG L +G+G+ D+ + + +DR++ Sbjct: 179 TRADLKVNNDEQELVFTFEGNAFLYNQIRIMVGVLLEIGNGRRDVHDIIRLIAVKDREQA 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GLY D + Y Sbjct: 239 RFTAPASGLYLDEIYY 254 >gi|257457999|ref|ZP_05623158.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] gi|257444712|gb|EEV19796.1| tRNA pseudouridine synthase A [Treponema vincentii ATCC 35580] Length = 265 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + I Y+G+ + GWQ+Q ++ ++QG +E+A+ L+ V + G+GRTD+GVH Sbjct: 10 RNILLRISYDGTRFHGWQKQLQHGEESFRTVQGEVERALALLHKHPVELFGSGRTDAGVH 69 Query: 57 ALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A Q AHF P ALN+ L + I+ + V HARFSA R+Y Y Sbjct: 70 ACGQAAHFFTDIARIKPESFVPALNSAL--PKDVRIIEAAHVSDNLHARFSARSRTYRYF 127 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + A + W I + D + A L G D TTF + Q+ S R I Sbjct: 128 VHCGKTAFAHQLPYCWHIRREPDINLLNRMAGVLSGELDCTTFSAAGDQSKSKSRYIYTA 187 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + + A +FL +RS G+L T D E L+++DR+ G AP Sbjct: 188 HFFTDRDFLVFEISANAFLWRMVRSVTGTLLHYEQQNGTKEDFEAVLRSKDRRNAGETAP 247 Query: 236 PEGLYFDSVEY 246 P+GL+ S++Y Sbjct: 248 PQGLFLWSIDY 258 >gi|266623132|ref|ZP_06116067.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] gi|288865107|gb|EFC97405.1| tRNA pseudouridine synthase A [Clostridium hathewayi DSM 13479] Length = 404 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 Y ++++Y+GS Y GWQ+Q N G++IQG +E + +TG V VHG+GRTD+GVHAL Q Sbjct: 157 KNYKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGVHALAQ 216 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F + N YL + I++L++ V +FH+R +A++++YLYRI Sbjct: 217 TANFHADTGMTEDQIRAYFNQYL--PEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIEMGP 274 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + + K L + M+ AA ++G HDF +F S +RTI + Sbjct: 275 KKDVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITIEKE 334 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + IR FL+ +R G+L +G + + ++++ L DR+ G APPEGL+ Sbjct: 335 GTKLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPEGLF 394 Query: 241 FDSVEY 246 + V Y Sbjct: 395 LERVMY 400 >gi|39933700|ref|NP_945976.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris CGA009] gi|42559720|sp|P60352|TRUA_RHOPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39647546|emb|CAE26067.1| putative tRNA-pseudouridine synthase [Rhodopseudomonas palustris CGA009] Length = 248 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 4 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 64 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+H+FTTFR CQA+SP +T+D DV Sbjct: 123 SNLALDLGKVWRVPKPLDTDAMHRAAQVLIGKHNFTTFRDTECQAASPEKTLDVLDVIRD 182 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 183 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 242 Query: 241 FDSVEY 246 V+Y Sbjct: 243 LMQVDY 248 >gi|260549154|ref|ZP_05823375.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] gi|260407882|gb|EEX01354.1| tRNA-pseudouridine synthase I [Acinetobacter sp. RUH2624] Length = 265 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKIADESIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTNAIRPEMGWLRGANSQL--PKDISIQWIKLMDENFHARFKATARRYRYVIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PCRPALLHKQVTHIYQQLDVQKMIKAASKFEGTHNFETFRAAACQSNKPVRHVTHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEIDHIDTMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|253729885|ref|ZP_04864050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726332|gb|EES95061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 267 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L+ ++RK AP EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLELKNRKNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|220906745|ref|YP_002482056.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] gi|219863356|gb|ACL43695.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7425] Length = 282 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 120/245 (48%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ ++GWQRQ + S+Q +E+AI +V G V VHGAGRTD+GVHA QV Sbjct: 11 QRIALVIQYLGTHFYGWQRQPHHRSVQEELEQAIAIVVGHPVTVHGAGRTDTGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P + LN L + I + VD +H+RFSA+ R Y Y + T Sbjct: 71 AHFDTDSVIPPHRWAEILNNRL--PQDVLIRASAGVDSSWHSRFSALWRRYRYTLYTDCR 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P K W + LD E M+ A L+GRH F + + G Sbjct: 129 PNLFLKSFTWHYYRPLDTELMQTALNPLLGRHHLAAFHRSKSGRKHSWVEVQVAECVRRG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+EI V A FL+ +R VG L VG G+ + + Q Q R + AP GL Sbjct: 189 SLVEIEVQASGFLYGMMRLLVGMLVQVGTGERSLASFTQIWQKQQRDQVKYAAPARGLCL 248 Query: 242 DSVEY 246 V Y Sbjct: 249 LRVGY 253 >gi|295093425|emb|CBK82516.1| pseudouridylate synthase I [Coprococcus sp. ART55/1] Length = 247 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 112/246 (45%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ Y Y+G+ Y GW+ + N +++G IE + + V +HGAGRTD+GVHA Sbjct: 1 MVNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLTRMVDAKVDIHGAGRTDAGVHARAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ L + P + LN YL + ++ + Y + + Sbjct: 61 VANGRLETDKTPEEIKDYLNRYLPADICALDVAVAGDRFHARLNATGKVYEYTLYVGAEK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +LD + M+ AA +LVG+HDF +F + S +RTI D+ Sbjct: 121 PVFDRNYVWCVPQGSALDVDVMKKAASYLVGKHDFRSFCGNNKMKKSTVRTIYDVDIVKE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +R FL +R G+L VG G ++ + + + DR+ GP APP GL Sbjct: 181 GDYVRMRFHGNGFLQNMVRILTGTLVEVGYGNMSAEHIPEIIAGMDRQLAGPTAPPHGLC 240 Query: 241 FDSVEY 246 VEY Sbjct: 241 LMKVEY 246 >gi|262280848|ref|ZP_06058631.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] gi|262257748|gb|EEY76483.1| tRNA-pseudouridine synthase I [Acinetobacter calcoaceticus RUH2202] Length = 265 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + V E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGVQYRGWQTQQPGVASVQETIERVLSKVANEPIALHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD + N+ L ISI + ++D+ FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRPETGWLRGANSQL--PKDISIQWIKLMDESFHARFKATARRYRYIIYNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQPLDVQKMIEAASKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L +G G + ++ AQDRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIVGCLLEIGQGMYEINHIDAMFAAQDRKAAGVTAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCNY 245 >gi|190575294|ref|YP_001973139.1| tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] gi|229558000|sp|B2FNZ6|TRUA_STRMK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|190013216|emb|CAQ46850.1| putative tRNA pseudouridine synthase A [Stenotrophomonas maltophilia K279a] Length = 256 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 129/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E+A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLEQALSSVADTPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L S + V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWMLGTTTRLPRSIAVRWCV--PVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL++ ++LD M A Q L+G +DF+ FRS+ CQA R + V+ Sbjct: 119 VRPALDRQTLSWERRALDETLMHAAGQALIGENDFSAFRSVQCQALHARRELQSLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FLGPLY 244 >gi|124267346|ref|YP_001021350.1| tRNA pseudouridine synthase A [Methylibium petroleiphilum PM1] gi|166228739|sp|A2SHS6|TRUA_METPP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124260121|gb|ABM95115.1| Pseudouridylate synthase [Methylibium petroleiphilum PM1] Length = 260 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y G Y GWQ Q +G ++Q +E+A+ V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGGAYRGWQSQPDGLTVQDRVEEALARFADRPVRTVCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D E P + N YL I++ VD FHAR SA R Y Y ++ Sbjct: 61 VHLDTEIEREPFSWVRGTNRYL--PPDIAVQWCRPVDAAFHARNSARGRRYAYLLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G + + LD MR AA HL+G HDF+ FRS CQA+SP++ + ++ G Sbjct: 119 RPAIEAGAVGWVFRPLDATPMREAAAHLIGEHDFSAFRSAECQAASPVKNLRRIEIVRCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH +R+ +G L VG G L + L A DR+ P P+GLYF Sbjct: 179 AYWRFEFEASAFLHHMVRNLMGCLLAVGQGVRAPQWLAEVLAAGDRRRAAPTFAPDGLYF 238 Query: 242 DSVEY 246 +Y Sbjct: 239 LGPQY 243 >gi|254796418|ref|YP_003081254.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] gi|254589655|gb|ACT69017.1| tRNA pseudouridine synthase A [Neorickettsia risticii str. Illinois] Length = 243 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 109/246 (44%), Positives = 147/246 (59%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY +EY G+G+ GWQ+Q + S+Q +E + + E + V+ AGRTD+GVHAL QV Sbjct: 1 MRYKATVEYVGTGFSGWQKQMSAPSVQEELESVLSFLLKEKIAVNVAGRTDAGVHALGQV 60 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P + A+N +LK + +L + IVD+ F ARFSAIRR Y YRII R+ Sbjct: 61 FHFDARESTLQPFQIVNAVNYHLKEKLIV-LLKIEIVDETFDARFSAIRRHYQYRIINRK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+ + R W +P L+ + MR AQHLVGRHDF +FRS C AS+ IRT+D +V Sbjct: 120 MPPAVFRNRCWHVPWKLNLDFMREQAQHLVGRHDFQSFRSSKCGASNAIRTLDRLEVEKN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I A+SFLH Q+R VG+L + GK S + L ++R GP AP GLY Sbjct: 180 GEEIIFHASAKSFLHHQVRIMVGTLVAIASGKLVSA--TEILSKRNRCYAGPTAPSCGLY 237 Query: 241 FDSVEY 246 V+Y Sbjct: 238 LLKVDY 243 >gi|315608004|ref|ZP_07882997.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] gi|315250473|gb|EFU30469.1| tRNA pseudouridine synthase A [Prevotella buccae ATCC 33574] Length = 284 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 24 MQRYFIYLSYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 83 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 84 VAHFDYEVGTTTEGQEAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 141 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + E+ ++ +P +LD + MR + L + DF F S Sbjct: 142 TYHYYIHT--GKMPFERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 199 Query: 171 TIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ + A FL +R+ VG+L +G K T ++A R + Sbjct: 200 TVTEARWVKTSPETWYFEITANRFLRNMVRAVVGTLVDLGRHKITLDQFRHIVEAGRRSD 259 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ + VEY Sbjct: 260 AGESMPGHALFLERVEY 276 >gi|197120829|ref|YP_002132780.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196170678|gb|ACG71651.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 245 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R +NA L +++ S+ F AR SA + Y Y I Sbjct: 61 VVSFPEDRPLPVKAYVMGMNALL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NS 179 L + +AW L+ ++R AA HLVGRHDF F++ C +R + DV Sbjct: 119 TRAPLTRLQAWQHFHPLELASVREAAAHLVGRHDFAAFQASDCACEHAVREVRRLDVLGE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL Sbjct: 179 AGGRIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLDLLARGDRTEAGPTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|206889178|ref|YP_002249342.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] gi|238057737|sp|B5YGE4|TRUA_THEYD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741116|gb|ACI20173.1| tRNA pseudouridine synthase A [Thermodesulfovibrio yellowstonii DSM 11347] Length = 254 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 82/256 (32%), Positives = 124/256 (48%), Gaps = 12/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ M I+Y+G+ YFGWQRQ+ G +IQ +IE+ + + + + GAGRTD+GVHAL Q Sbjct: 1 MVNIKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + IL K LN+ L + I I+ L V+ FH + S R+SY+Y + + Sbjct: 61 VATFKAELKMSLDILKKVLNSLL--PNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF----------TTFRSIHCQASSPIR 170 + W P LD M A G DF R++H + Sbjct: 119 ECSCFIQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAFSGSTDVKNKIRTVHDFTMQLLT 178 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + D+ GN I+ R+ A FL +R+ VG + +G GK +++A ++ R Sbjct: 179 KLCFMDMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPST 238 Query: 231 GPLAPPEGLYFDSVEY 246 AP GL+ + V Y Sbjct: 239 MQTAPSNGLFLEKVIY 254 >gi|323345677|ref|ZP_08085900.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] gi|323093791|gb|EFZ36369.1| tRNA pseudouridine synthase A [Prevotella oralis ATCC 33269] Length = 243 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q ++ A+ ++ + V V GAGRTD+GVHA Sbjct: 1 MQRYFVYFAYDGTAYHGWQVQPNGNSVQVELQNALSVLLRQPVEVVGAGRTDAGVHARMM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD V L LN L IS+ + VD HARFSA+ R+Y Y + Sbjct: 61 AAHFDFDTPVDEVQLAYKLNRLL--PKDISVDRVVAVDSSMHARFSAVSRTYHYYVH--C 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 ++ ++ + LD M AQHL+ DF F H + + R V Sbjct: 117 RKNPFKRAYSYELHYQLDFRAMNEVAQHLLQVEDFGAFCKSHNDSKTTLCRVTRALWVQD 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG + + + K ++ ++R G P L Sbjct: 177 DADSWHFVITANRFLRNMVRAVVGTLIDVGRHRISKEEFIKIVERRNRTGAGESMPAHAL 236 Query: 240 YFDSVEY 246 + + ++Y Sbjct: 237 FLEDIKY 243 >gi|261346179|ref|ZP_05973823.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] gi|282565835|gb|EFB71370.1| tRNA pseudouridine synthase A [Providencia rustigianii DSM 4541] Length = 271 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS Y+GWQRQ+ S+QG +E+A+ + E + V+ AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYYGWQRQQEVKSVQGCLEEALSKIAAEPISVNCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ N +L I++ VD++FHARFSA R Y Y I + Sbjct: 69 HFETTAIRKEAAWTMGANTHL--PPDIAVRWCKPVDEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V GN Sbjct: 127 PAILSNGVTHFHYPLDEKRMHQAAQALLGENDFTSFRAVQCQSRTPWRNVMHVNVTRHGN 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + L+ +DR + A EGLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMHQLLELKDRTKAAATAKAEGLYLV 246 Query: 243 SVEY 246 SV+Y Sbjct: 247 SVDY 250 >gi|160934132|ref|ZP_02081519.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] gi|156866805|gb|EDO60177.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753] Length = 251 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 107/246 (43%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G Y GWQ Q+N S+Q + A+ V G+ V G RTDSGVHA + Sbjct: 4 RNLLLTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQYC 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L ALN +L + + V FHAR+S + Y Y I Sbjct: 64 ISLKTGHRIPCERLVAALNRFLPMDMAVKGCRS--VSLDFHARYSCKGKEYQYLIWNDPV 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 GRA+ LD + + AAQ V + H + + R + V+ Sbjct: 122 RNPFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSRE 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ RV A FL+ +R VG+L + GK + L+A+DR + GP A GLY Sbjct: 182 GSLVTFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLY 241 Query: 241 FDSVEY 246 + V Y Sbjct: 242 LNRVFY 247 >gi|264677138|ref|YP_003277044.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|299530680|ref|ZP_07044095.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] gi|262207650|gb|ACY31748.1| tRNA pseudouridine synthase A [Comamonas testosteroni CNB-2] gi|298721196|gb|EFI62138.1| tRNA pseudouridine synthase A [Comamonas testosteroni S44] Length = 276 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + P + N +L ++ FH+R A R Y Y ++ Sbjct: 61 VHFDTELQRAPNSWVRGTNTFLPKDIAVQWAAEVADGPNGFHSRACATARRYAYVLLQSP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 +++ GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 121 VRPSVDHGRVGWVFQALDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIHYR 180 Query: 179 -----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G L VG G +++ L+A+ R Sbjct: 181 PAGQAPMRDGQMECGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEARSR 240 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P P+GLYF Y Sbjct: 241 EVAAPTFSPDGLYFLGPIY 259 >gi|295103893|emb|CBL01437.1| pseudouridylate synthase I [Faecalibacterium prausnitzii SL3/3] Length = 254 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L + V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHL--PPDIRVLAVQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A++ +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDESAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEY 246 L+ VEY Sbjct: 239 LFLKRVEY 246 >gi|83816613|ref|YP_444802.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] gi|123726203|sp|Q2S4S9|TRUA_SALRD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83758007|gb|ABC46120.1| tRNA pseudouridine synthase A [Salinibacter ruber DSM 13855] Length = 265 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 6/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +++EY+G+ + GWQ Q ++QG++E+A+ V G V G+GRTD+GVHA Q Sbjct: 1 MPRYRLLVEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVTGSGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL P L +LN + + + + D R Y Sbjct: 61 VAHVDLPETRDPYRLRGSLNGLTPDAVAVRRVERAPDDFHARYDARRRRYHYHLHTQ--- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 P AL + + D +R A L+GRH+F++F + + + T+ H Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAATPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 180 -FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + VV FLH +R+ VG+L +G K + L L A+DR+ GP PPEG Sbjct: 177 ARRGCWRVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPEG 236 Query: 239 LYFDSVEY 246 L ++V Y Sbjct: 237 LVLEAVRY 244 >gi|221134792|ref|ZP_03561095.1| tRNA pseudouridine synthase A [Glaciecola sp. HTCC2999] Length = 264 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 129/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 M +EY G+ ++GWQRQ N S+Q ++E A V E V + +GRTD+GVHA Q+ Sbjct: 3 TNIAMAVEYYGADFYGWQRQDNVPSVQQALEDAASFVADEKVNIICSGRTDAGVHATYQI 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + + K D I++ V FHARFSA R Y Y I + Sbjct: 63 VNFKTSAKRDEKAWTLGVTT--KTPDAIAVKWAVEVPDTFHARFSATARRYRYIIYNHRV 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A+ LD + M AAQ LVG HDFT+FR+ CQ+ +P R I +V G Sbjct: 121 PPAILAKGLTHCYLPLDAQKMHEAAQVLVGEHDFTSFRAALCQSKTPFRNIHFVNVQRVG 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ GSL L+G G+ + L++ L+ +DR + G A P GLYF Sbjct: 181 EYVIIDIKANAFLHHMVRNIAGSLMLIGAGEQPLSWLQEILEIKDRTQAGVTAKPNGLYF 240 Query: 242 DSVEY 246 V+Y Sbjct: 241 VDVDY 245 >gi|258541768|ref|YP_003187201.1| tRNA pseudouridine synthase A [Acetobacter pasteurianus IFO 3283-01] gi|256632846|dbj|BAH98821.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01] gi|256635903|dbj|BAI01872.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-03] gi|256638958|dbj|BAI04920.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-07] gi|256642012|dbj|BAI07967.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-22] gi|256645067|dbj|BAI11015.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-26] gi|256648122|dbj|BAI14063.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-32] gi|256651175|dbj|BAI17109.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654166|dbj|BAI20093.1| tRNA pseudouridine synthase A TruA [Acetobacter pasteurianus IFO 3283-12] Length = 262 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 111/248 (44%), Positives = 157/248 (63%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R+ + +EY+G+G GWQRQK+G S+Q +E+A + V AGRTDSGVHAL Q Sbjct: 10 QRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEEAAARLANNRPVSSITAGRTDSGVHALAQ 69 Query: 61 VAHFDLVREWVPVIL--CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH D + + L+ +LK + +L+ + VD + ARFSAI RSY YRI+ Sbjct: 70 VAHLDFPADVRFSRHSVREGLSYHLK-PHNVVVLDAAQVDTDWSARFSAIWRSYQYRILN 128 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L G+ W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT+D +++ Sbjct: 129 RRSRPTLLAGQVWHVKSTLDVEKMQEAANILVGSHDFTSFRAVACQAHSPMRTLDQLEIS 188 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R GP APPEG Sbjct: 189 RHGDEVIVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEG 248 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 249 LYLNGVGY 256 >gi|189220286|ref|YP_001940926.1| pseudouridylate synthase [Methylacidiphilum infernorum V4] gi|259550415|sp|B3E0A0|TRUA_METI4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189187144|gb|ACD84329.1| Pseudouridylate synthase [Methylacidiphilum infernorum V4] Length = 255 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 135/244 (55%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y + + Y GSG+ GWQRQ ++Q ++E+A+ + E + V GAGRTD+GVHA QVA Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVAS 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F R+ P +L +ALN +L DT+ + + IV ++F ARF A+ ++Y Y + Sbjct: 68 FAAPRKLEPEVLKRALNYHL--PDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPVMD 125 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQ-HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 GRAW IP+++D E M AA+ L + + +P+RT+ G+ Sbjct: 126 PFYLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLEQGS 185 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+ V A FL+ +R+ VG+L VG G+ + +L+K + Q R E APP GLY Sbjct: 186 LVFFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYLL 245 Query: 243 SVEY 246 +V+Y Sbjct: 246 AVDY 249 >gi|134094449|ref|YP_001099524.1| tRNA pseudouridine synthase A [Herminiimonas arsenicoxydans] gi|189030136|sp|A4G4G0|TRUA_HERAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|133738352|emb|CAL61397.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Herminiimonas arsenicoxydans] Length = 275 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 140/247 (56%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q NG ++Q +E A++ T + + AGRTD+GVHAL QV Sbjct: 12 RRIVLGVQYDGAPWQGWQTQLNGLTVQDKLEFALYKFTQQTITTACAGRTDAGVHALEQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDK--QFHARFSAIRRSYLYRIITR 119 HFD E + +N +L S + + D FHARFSA R+Y Y + Sbjct: 72 VHFDTTLERDMQSWVRGVNTFLPSSIAVRWASEVAHDPAENFHARFSARSRTYHYMLYNN 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L +G+A + ++LD M+ AA HL+G+HDF+ FRS+ CQA SP++T+ + Sbjct: 132 PVRSPLLEGKAGWVFRALDIAKMQEAAAHLLGQHDFSAFRSVQCQAKSPVKTMHAIKIER 191 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI V A +FLH +R+ VGSL VG+G + L++ L Q+RK P P+GL Sbjct: 192 RGDLIMFTVHANAFLHHMVRNIVGSLIYVGNGTQAPSWLKEVLAGQERKFAAPTFMPDGL 251 Query: 240 YFDSVEY 246 Y ++Y Sbjct: 252 YLAKIDY 258 >gi|159044486|ref|YP_001533280.1| tRNA pseudouridine synthase A [Dinoroseobacter shibae DFL 12] gi|189030132|sp|A8LNZ7|TRUA_DINSH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157912246|gb|ABV93679.1| pseudouridine synthase A [Dinoroseobacter shibae DFL 12] Length = 257 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 164/250 (65%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + IEY+G+ + GWQRQ+ S+QG++E A+ + + + AGRTD+GVHAL Q Sbjct: 1 MPRFALKIEYDGAPFAGWQRQREQPSVQGAVEAALRGLQPDHAGIAAAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL R+W P L +ALNA+L+ + ++L + V + FHARFSA+ RSYL+R++ R+ Sbjct: 61 VAHVDLARDWDPFRLSEALNAHLRPAPV-AVLAAARVGEDFHARFSALERSYLFRLLVRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + LD E MR A++L+G+HDFTTFRS CQA+SP++T+D + Sbjct: 120 APATHDAGLVWRVMNPLDVEAMREGAKYLIGKHDFTTFRSTMCQAASPVKTLDEITIEES 179 Query: 181 GN----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ARSFLH Q+RS VG+L+ VG G W D++ AL+A+DR CGP+ P Sbjct: 180 PRDAGTEFRFHLRARSFLHNQVRSIVGTLERVGAGAWDPADVKTALEARDRAACGPVCAP 239 Query: 237 EGLYFDSVEY 246 +GLY +V Y Sbjct: 240 QGLYLRAVRY 249 >gi|326335636|ref|ZP_08201823.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692402|gb|EGD34354.1| tRNA pseudouridine synthase A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 247 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG YFGWQ+Q + S+Q +E+AI L+ E + + GAGRTD+GVHA Sbjct: 1 MRFFIELSYNGKNYFGWQKQPHSLSVQEELERAISLLLHEEITLVGAGRTDTGVHARDYF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD ++ K LN++L TI+I + + HARF AI R+Y Y I + Sbjct: 61 AHFDFSLPLPENLVNK-LNSFL--PKTIAIKGIFPMKDAAHARFDAISRTYQYFISREKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P E+ P ++ N + L+ +DF F + + I + Sbjct: 118 PFLYEQSYYVYQPLAISQMNRA--CEILLKHNDFQCFSKTNTDVRTYICHLTEAFWKEED 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A FL +R+ VG++ VG GK + ++ E+ L +++R + G P L+ Sbjct: 176 SLLIFRITADRFLRNMVRAIVGTMIEVGIGKISLSNFEQILLSKNRSQAGYSVPGHALFL 235 Query: 242 DSVEY 246 + V Y Sbjct: 236 EKVVY 240 >gi|222150476|ref|YP_002559629.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] gi|222119598|dbj|BAH16933.1| tRNA pseudouridine synthase A [Macrococcus caseolyticus JCSC5402] Length = 273 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + ++YNG + G+Q Q G ++Q +E+ + + + V +H + RTD GVHA Q Sbjct: 1 MERILLQLQYNGVNFQGFQIQNEGRTVQYELERILKRMHKQFVRIHPSSRTDKGVHARMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD A N+ L D I I ++ + + FH+R+ I ++Y Y++ + Sbjct: 61 YVHFDTPLSIPESKWQHAFNSAL--PDDIYITQVTKISEHFHSRYDCIGKAYRYKVYVAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + G+ I LD + M AAQH +G HDFT+F S + + RT+ F+V Sbjct: 119 HRNVMHSGQITHIKTKLDVKRMNDAAQHFLGTHDFTSFCSAKTEIENKERTLYRFEVTET 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + V+ FL+ +R V L VG G+ + +QAQDR + G AP EGLY Sbjct: 179 AEGYDFYVIGSGFLYNMVRIMVQYLIDVGTGQKDGDSIPAIIQAQDRTKAGKTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1] Length = 274 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 100/248 (40%), Positives = 143/248 (57%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +++EYNGS Y GWQ QK S+Q ++EKA+ ++ V V AGRTDSGVHA Sbjct: 1 MTKKVVLVVEYNGSEYKGWQAQKFGVPSVQENLEKALAIIANHPVKVVCAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HF+ E +N +L I+++ S V FHARFSA+ R Y Y I + Sbjct: 61 AQVVHFETDVERNERAWTLGVNTHL--PSDITVVAASPVSNDFHARFSALSRRYRYVIYS 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A+ K+LD M+ AA+ +G HDF++FR++ CQA +PIRTI +F+V+ Sbjct: 119 SDFCPAILSKGITWTYKNLDVSAMKEAAKVFLGTHDFSSFRAVGCQAKTPIRTILNFEVH 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I + V A +FLH IR+F G L +G G+ + ++ L+A+DR + G APP G Sbjct: 179 QLGQYIVLDVRANAFLHHMIRNFAGVLMSIGAGEKPVSWAKQTLEAKDRTKGGITAPPTG 238 Query: 239 LYFDSVEY 246 LYF +Y Sbjct: 239 LYFVDAQY 246 >gi|258513673|ref|YP_003189895.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] gi|257777378|gb|ACV61272.1| tRNA pseudouridine synthase A [Desulfotomaculum acetoxidans DSM 771] Length = 250 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 84/252 (33%), Positives = 125/252 (49%), Gaps = 8/252 (3%) Query: 1 MIR---YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R +I+ Y+G+ Y G+Q QK +IQG +++ + + E + V AGRTDSGV Sbjct: 1 MNRGRNIKVILAYDGTNYHGFQIQKGKRLPTIQGVLQRELSHLAKETITVTTAGRTDSGV 60 Query: 56 HALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 HA QV +F + + ALN+ L I L+ VD FHAR+SA+ ++Y Y Sbjct: 61 HARGQVFNFFTGNWQIPVDRVIYALNSVL--PPDIRALSAEEVDLGFHARYSALAKTYCY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I Q + ++ LD ++MR A H+ G HDF +F + S IRTI Sbjct: 119 YISRDQIVSPFTRLYSYQYNYPLDLDDMRQAVLHITGEHDFKSFMASGSLVKSTIRTIYQ 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ ++ FL+ +R G+L VG GK +++E L+ DRK G Sbjct: 179 IDLIEKDKMLIFTFRGNGFLYHMVRIITGTLLQVGTGKIHYSEIETILKKCDRKSAGATV 238 Query: 235 PPEGLYFDSVEY 246 P GL+ + VEY Sbjct: 239 PALGLFLERVEY 250 >gi|253689176|ref|YP_003018366.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755754|gb|ACT13830.1| tRNA pseudouridine synthase A [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 283 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ + +S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 24 KIALGIEYDGSQYYGWQRQSDVASVQACLEKALSKVADEPIEVFCAGRTDAGVHGTGQVV 83 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA L I++ + V++ FHARFSA R Y Y I + Sbjct: 84 HFTTQAIRKDAAWTMGVNANL--PPDIAVRWVKTVEEDFHARFSATARRYRYVIYNHRYR 141 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M A Q L+G +DFT+FR++ CQ+ +P R ++H V G+ Sbjct: 142 PAVLSHGMTHFYHPLDVDRMERAGQCLLGENDFTSFRAVQCQSRTPWRYVNHLKVTRHGD 201 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 202 YIVVDIKANAFVHHMVRNIVGSLMEVGCGNRPESWIAELLAAKDRTLAAATARAEGLYLV 261 Query: 243 SVEY 246 +V+Y Sbjct: 262 AVDY 265 >gi|94311405|ref|YP_584615.1| tRNA pseudouridine synthase A [Cupriavidus metallidurans CH34] gi|93355257|gb|ABF09346.1| pseudouridylate synthase I [Cupriavidus metallidurans CH34] Length = 278 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+GS Y GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL QV Sbjct: 5 RIAIGLHYDGSAYSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQVI 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 H D + + +NA+L S + VD+ FHARF A R Y Y + T Sbjct: 65 HLDTELDRDRFSWVRGVNAFLPPSIALQW--AEPVDENFHARFLAYERMYYYALYTGPHR 122 Query: 123 LALEKGR----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + GR + LD E MR A+ L+G HDF+ FR+ CQA SP++T+ + Sbjct: 123 APMIHGRAGYLMLPHGQRLDTEAMRRASACLLGEHDFSAFRAAECQAKSPVKTMYDVTIE 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + GN + +R A +FLH +R+ +G L VG G++ + + + L+ ++R++ P P+G Sbjct: 183 ADGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAEWMAEVLEGRNRQKAAPTFMPDG 242 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 243 LYLVDVKY 250 >gi|228995804|ref|ZP_04155464.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] gi|229003424|ref|ZP_04161244.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228757802|gb|EEM07027.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock1-4] gi|228763965|gb|EEM12852.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides Rock3-17] Length = 245 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ +V ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELVSERFHARYNSKSKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|288941328|ref|YP_003443568.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] gi|288896700|gb|ADC62536.1| tRNA pseudouridine synthase A [Allochromatium vinosum DSM 180] Length = 261 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 136/241 (56%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+G+ + GWQ Q ++Q +E A+ V V+VH AGRTD+GVHAL QV HF+ Sbjct: 1 MGVEYDGTHFHGWQTQSGVRTVQSELEAAVSRVANHPVIVHCAGRTDAGVHALEQVVHFE 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 N L + + VD FHARFSA R Y Y+I+ R+ + Sbjct: 61 TTATRSERSWVLGANVNL--PPDVGVRWAHPVDDGFHARFSAQARHYRYQILARRTRSPI 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 ++ RA + ++LD E MRIAA LVG HDF++FR++ CQA SPIR + + D++ LI Sbjct: 119 QRDRAVWVHEALDLERMRIAAVALVGEHDFSSFRAVACQAKSPIRRVLYLDLSEREGLIT 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A FLH +R+ G L +G G+ + + L+ +DR+ G A P+GLYF + Sbjct: 179 LAIGANGFLHHMVRNIAGVLMAIGRGEASVDWTRELLEVRDRRLGGVTAQPQGLYFVRAD 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|74317934|ref|YP_315674.1| tRNA pseudouridine synthase A [Thiobacillus denitrificans ATCC 25259] gi|123759044|sp|Q3SHL7|TRUA_THIDA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|74057429|gb|AAZ97869.1| tRNA pseudouridine synthase [Thiobacillus denitrificans ATCC 25259] Length = 260 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + +EY G G+ GWQ Q +Q ++EKA+ + GE + V AGRTD+GVHA Q Sbjct: 1 MMRIAVGLEYRGVGFCGWQSQPQACGVQDAVEKAVSAIAGEAITVTAAGRTDTGVHAALQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + +N++L +++L VD +FHARF+A R Y Y ++ Sbjct: 61 IVHFDTTSVRPLTAWVRGVNSHL--PAGVAVLWAREVDAEFHARFAAFERGYRYVLLNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L G + LD M AA L+GRHDF+ FR+ CQA SP++ + + Sbjct: 119 VRPGLNAGLVGWHHRPLDVACMNRAASPLIGRHDFSAFRAAECQARSPVKELRRALIERR 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FLH +R+ +G L +G G L + L +DR P GLY Sbjct: 179 GDYLLCDFRADGFLHHMVRNLMGCLVQIGAGGRPPEWLHEVLAGRDRTRAAPTFEAAGLY 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LTHIRY 244 >gi|313114592|ref|ZP_07800100.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] gi|310623056|gb|EFQ06503.1| tRNA pseudouridine synthase A [Faecalibacterium cf. prausnitzii KLE1255] Length = 248 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAQTFQDALQAVLGSRPDIKGCSRTDAGVHALGFK 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I +L+ +V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHL--PPDIRVLDAQVVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDVN 178 + +P+ LD M+ AAQ VGRHDF + A++ +RTI V Sbjct: 119 DSPFDAAYYTRVPRHLDEARMQAAAQQFVGRHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ ++ L+++DR GP P +G Sbjct: 179 REGDEIDIEVTADGYLYNMVRILAGTLCEAGAGRLDPAEIPAILESRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEY 246 L+ VEY Sbjct: 239 LFLKCVEY 246 >gi|315641606|ref|ZP_07896674.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] gi|315482647|gb|EFU73175.1| tRNA pseudouridine synthase A [Enterococcus italicus DSM 15952] Length = 248 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M +IIEY+G+ Y GWQR + +IQG +EK + +TGE + + G+GRTD+G HA Sbjct: 1 MRNIKLIIEYDGTRYQGWQRLGDSDKTIQGKLEKIVSQLTGETIELIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + YL I + ++ V ++FHAR++A+ + Y Y + Sbjct: 61 QVANFKTNCNKSLEEMHHFFLTYL--PKDIVVTSIDEVPERFHARYNAVSKQYSYYVRHA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A ++ + + + LD E M A L G HDF F ++ S +RTI+ ++ Sbjct: 119 ELPSAFDRNYHFYVAEPLDWEAMTEACLRLTGAHDFLGFSALKKSKKSTVRTIESIEMEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I FL+ +R +G++ VG G+ T ++ QA+ R+ G P +GL Sbjct: 179 EEAMIRFVFRGDGFLYKMVRIMMGTILAVGKGEMTVNQIDDIFQAKIRQAAGETVPAQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDGVFY 245 >gi|153007028|ref|YP_001381353.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] gi|152030601|gb|ABS28369.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. Fw109-5] Length = 245 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++EY+G+ Y GWQ Q NG SIQ +E+A+ + E V AGRTD+GVHA Q Sbjct: 1 MPVVKLVLEYDGTRYVGWQVQPNGPSIQAEVERALATLHKEPRRVTAAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F R K +NA L D +++ S+ F AR SA + Y Y + + Sbjct: 61 VVSFPEARPLPLAAYVKGMNALL--PDEVAVRAASVEPDGFDARRSARGKRYRYVLENLE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + +AW + +LD MR A++HL+GR DF F++ C +R + DV Sbjct: 119 TRAPLSRLQAWQLFGALDVGAMREASRHLLGRQDFAAFQAADCACDHAVREVHRLDVLGE 178 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + E+ V A +F+ +R+FVG+L VG G+ + D+ + ++DR G APP+GL Sbjct: 179 PSGRVELVVEATAFVKHMVRNFVGTLVEVGKGRRRAEDMPALVASRDRTRAGRTAPPQGL 238 Query: 240 YFDSVEY 246 + + V Y Sbjct: 239 FLEEVFY 245 >gi|326795335|ref|YP_004313155.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] gi|326546099|gb|ADZ91319.1| tRNA pseudouridine synthase A [Marinomonas mediterranea MMB-1] Length = 270 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + +++EY+GS Y GWQ QK + ++Q +E A+ + V V AGRTD+GVHA Q Sbjct: 4 KKVVLVVEYDGSRYKGWQAQKFDVDTVQEKLEYALSKIANHSVGVICAGRTDAGVHASSQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ E +N +L IS++ + V +FHARFSA+ R Y Y I + Sbjct: 64 VVHFETASERPIRAWTLGVNTHL--PPDISVVAANYVADEFHARFSALTRRYRYVIYQSE 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K L + M+ AA +G HDF+++R+I CQA SPIRT+ +F VN F Sbjct: 122 FRPAIMAKGVTWTYKDLSEQKMQQAAACFIGTHDFSSYRAIGCQARSPIRTVLNFSVNKF 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH IR+F G L +G G+ ++ L A+DR + G APP GLY Sbjct: 182 GQYIVLDIRANAFLHHMIRNFAGVLMAIGAGEKPVQWAKQVLDAKDRTQGGVTAPPHGLY 241 Query: 241 FDSVEY 246 F +Y Sbjct: 242 FVDAQY 247 >gi|197285647|ref|YP_002151519.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] gi|194683134|emb|CAR43721.1| tRNA pseudouridine synthase A [Proteus mirabilis HI4320] Length = 281 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 19 KIALGIEYDGSHYYGWQRQNEVRSVQERLEKALSQVANEPISVFCAGRTDAGVHATGQVV 78 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N +L I++ + V FHARFSA R Y Y I + Sbjct: 79 HFETTAHRKDAAWTMGVNTHL--PQDIAVRWVKTVANDFHARFSATARRYRYVIFNHRYR 136 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G +DFT+FR++ CQ+ +P R + H +V+ +G+ Sbjct: 137 PAILSSGVTHFHYPLDAQRMHQAAQCLLGENDFTSFRAVQCQSRTPWRNVMHVNVSRYGD 196 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G T + + L +DR + A GLY Sbjct: 197 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQAITWMAELLALKDRTKAAATAKANGLYLV 256 Query: 243 SVEY 246 SV+Y Sbjct: 257 SVDY 260 >gi|253999257|ref|YP_003051320.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] gi|253985936|gb|ACT50793.1| tRNA pseudouridine synthase A [Methylovorus sp. SIP3-4] Length = 261 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EY+G+ + GWQ Q G +Q ++E+ + + V V AGRTD+GVHAL QV Sbjct: 1 MRVALGLEYDGAHFCGWQSQPGGCGVQDALERELARMACHPVRVIAAGRTDTGVHALAQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E + +NA L ++ +L VD +FHARFSA +R Y Y + + Sbjct: 61 VHFETTTERPLNAWVRGVNAGL--PSSVRVLWAQQVDDEFHARFSARQRYYQYILFDQAV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G+ +SLD + M AA HL+G HDF+ FR+ CQA SPIRT+ +V G Sbjct: 119 APAILAGKVGWFHQSLDVDAMAEAAAHLIGEHDFSAFRAAECQAKSPIRTLQQAEVRRAG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I +FLH Q+R+ VG+L VG G +++ LQ+ DR+ P P+GLY Sbjct: 179 QAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAFIQQLLQSHDRRLAPPTFSPDGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 SGVGY 243 >gi|27383218|ref|NP_774747.1| tRNA pseudouridine synthase A [Bradyrhizobium japonicum USDA 110] gi|27356392|dbj|BAC53372.1| tRNA pseudouridine synthase I [Bradyrhizobium japonicum USDA 110] Length = 252 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 8 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 68 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 127 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 187 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 246 Query: 241 FDSVEY 246 V+Y Sbjct: 247 LVKVDY 252 >gi|28211488|ref|NP_782432.1| tRNA pseudouridine synthase A [Clostridium tetani E88] gi|42559805|sp|Q893H3|TRUA1_CLOTE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|28203929|gb|AAO36369.1| tRNA pseudouridine synthase A [Clostridium tetani E88] Length = 245 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+EY+G+ Y GWQ+QK + +IQ IE + +TGE + V G GRTD+GVHA Sbjct: 1 MRNLKMILEYDGTRYKGWQKQKKDVLTIQDKIETVLSKMTGEDIQVIGCGRTDAGVHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F ++ + L +L + I + + ++FHAR++ ++Y+YRI Sbjct: 61 YVANFHTNCDFTVDYMLDYLYEFL--PEDIVVKTMKDTSERFHARYNVKSKTYVYRINNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + K A+ + L+ M+ AA+ L+G HDF +F + + S IR I + ++ Sbjct: 119 KFRSVFNKKYAYHDNEKLNISAMKDAAEFLIGTHDFKSFTRLKSNSKSTIRAIKYINITE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I I V FL +R G+L VG D+EK L + R + + P +GL Sbjct: 179 NQGIISIEVNGNGFLLNMVRIVAGALLEVGKENIKPIDIEKMLNEKKRADASLILPAKGL 238 Query: 240 YFDSVEY 246 ++Y Sbjct: 239 CLKDIQY 245 >gi|262383400|ref|ZP_06076536.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] gi|262294298|gb|EEY82230.1| tRNA pseudouridine synthase A [Bacteroides sp. 2_1_33B] Length = 265 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 119/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ + + V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALATLMRKPVPIVGAGRTDAGVHARLMI 74 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LN L I++ + V + HARF A R+Y Y I TR+ Sbjct: 75 AHFDWEGPIEDLAFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYITTRK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E P LD E M A + L DFT+F +H + I H Sbjct: 133 DPFNYELVY--KFPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEY 246 V Y Sbjct: 251 LVDVTY 256 >gi|228989617|ref|ZP_04149601.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] gi|228770154|gb|EEM18734.1| tRNA pseudouridine synthase A 2 [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G Y GWQR N ++IQG IE + +TG + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGGRYKGWQRLGNNDNTIQGKIESVLSEMTGREIEIIGCSRTDAGVHALH 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ ++ ++FHAR+++ ++YLY+I Sbjct: 61 QVANFKIDENLPELKVKKYLNQYL--PNDISITDVELISERFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ENM+ AAQ+L+G HDFT F + + S +R I DV Sbjct: 119 EHTNPFMRKYSMHVGKKLNIENMQKAAQYLIGSHDFTAFSNAKSKKKSMVREIYMLDVVE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 SEGFIQIRVNGNGFLHNMVRKIVGALVEVGLGQLDAEVIPQILEAKQRNQINCLADASGL 238 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 239 YLEKVDF 245 >gi|291296648|ref|YP_003508046.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] gi|290471607|gb|ADD29026.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279] Length = 263 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + +EY+GSG+ G Q Q G ++Q +E A+ + G + GRTD+GVHAL Sbjct: 13 RRILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHALAM 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H+D + + ALN L I L V FHAR S R Y YRI+ R+ Sbjct: 73 PVHYDTLDNIPTEKIPHALNTLL--PPDIRALAAQEVPADFHARKSCHWREYRYRILQRR 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVN 178 P AL++ R W IP SL+ MR A + LVG HDF F + R Sbjct: 131 MPPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAFAVKEERATVREIYRAHLEVWPT 190 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I I V FL Q+RS VG+L +G GK S+ ++ L + RK+ GP AP +G Sbjct: 191 EGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPAQG 250 Query: 239 LYFDSVEY 246 LYF Y Sbjct: 251 LYFVRAGY 258 >gi|86747801|ref|YP_484297.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] gi|123293209|sp|Q2J2C4|TRUA_RHOP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86570829|gb|ABD05386.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris HaA2] Length = 245 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPTLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+ I++L+ +V F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAH-VRPHPIAVLSAELVADDFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALELGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPAKTLDVLDVVRN 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|313123140|ref|YP_004033399.1| tRNA pseudouridine synthase a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279703|gb|ADQ60422.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325684750|gb|EGD26904.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 262 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 7/251 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ACGLYLYHVFY 249 >gi|255321215|ref|ZP_05362381.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262380100|ref|ZP_06073255.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] gi|255301769|gb|EET81020.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SK82] gi|262298294|gb|EEY86208.1| tRNA pseudouridine synthase A [Acinetobacter radioresistens SH164] Length = 265 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ Q+ S+Q ++E+ + + E +++HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFCGIRYRGWQTQQAGVPSVQETLERVLSKIADEKIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L I++ L + + FHARF A R Y Y I Sbjct: 61 MVAHFDTHAIRTERGWMMGSNSQL--PKDIALQWLQPMGEDFHARFKACARRYRYVIYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + + LD E M+ AA+ G H+F +FR+ CQ++ PIR + H ++ Sbjct: 119 PYRPALLHKQVTHVYQQLDIEKMKKAAKKFRGVHNFESFRAAACQSNQPIRDVTHCELFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ VG L VG G + ++ A+DR+ G AP +GL Sbjct: 179 HGRYLVLDIQANGFLHHMVRNIVGCLLEVGQGMYDIGHIDSIFAAEDRRAAGMTAPADGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQAYY 245 >gi|296125792|ref|YP_003633044.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] gi|296017608|gb|ADG70845.1| tRNA pseudouridine synthase A [Brachyspira murdochii DSM 12563] Length = 247 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ ++GWQ Q N ++QG I KA+ + GE + ++G GRTD+GVHAL Q Sbjct: 1 MNNIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKIYGEKITIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + VP+ ALN+ L + I+ +D F+AR SA R YLY + Sbjct: 61 VANFRVPKMLVPINKVHIALNSCL--DRDLRIIKAEEMDDNFNARASATFREYLYVVHNS 118 Query: 120 QAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + +D + + A++L+G H+FT+F S + S R ++ Sbjct: 119 STSFPFYERYAWFYRKNIIDEKLINEYAKYLIGEHNFTSFCSTEDENDSKFRYLEKVKAV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I + +FLH +R VG+L K +E L+ ++R E AP G Sbjct: 179 RKGDTIYFIIKGNAFLHNMVRIIVGTLVEGQKKKMPVNFIEDILKRENRTEAFVTAPAHG 238 Query: 239 LYFDSVEY 246 LYF + Sbjct: 239 LYFRRAFF 246 >gi|152974254|ref|YP_001373771.1| tRNA pseudouridine synthase A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023006|gb|ABS20776.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98] Length = 260 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 16 MNNYKLTIQYDGGRFKGWQRLGNNDNTIQGKIESVLSEMIGQEIEIIGCSRTDAGVHALN 75 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + V + K LN YL + ISI + V ++FHAR+++ ++YLY+I Sbjct: 76 QVANFKVDEKLVETKVKKYLNQYL--PNDISITEVEQVPERFHARYNSKTKTYLYKIWNE 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + +PK L+ ENM+ AA + +G HDFT F + + S +R I DV Sbjct: 134 EHTNPFMRKYSMHVPKKLNVENMKQAAHYFIGSHDFTAFSNAKSKKKSMVREIYVLDVFE 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 194 SEGFIQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLADANGL 253 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 254 YLEKVDF 260 >gi|229083731|ref|ZP_04216052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] gi|228699589|gb|EEL52253.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-44] Length = 268 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y I+Y+G+ Y GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKFTIQYDGARYKGWQRLGNNDNTIQGKIESVLSEMVGQEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + + K LN YL + ISI ++ V ++FHAR+++ ++YLY+I Sbjct: 84 QVANFKIEEKLSEPKVKKYLNQYL--PNDISITDVEQVPERFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AAQ+L+G HDFT F + + S +R + DV Sbjct: 142 EHTNPFMRKYSMHVQKKLNIESMQKAAQYLIGSHDFTAFSNAKSKKKSMVREVYMLDVAE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 202 SEGFIQIRVSGNGFLHNMVRKIVGALVEVGLGQLDADAIPQILEAKQRNQINCLADASGL 261 Query: 240 YFDSVEY 246 Y + V++ Sbjct: 262 YLEKVDF 268 >gi|194290207|ref|YP_002006114.1| tRNA pseudouridine synthase a [Cupriavidus taiwanensis LMG 19424] gi|238692732|sp|B3R117|TRUA_CUPTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193224042|emb|CAQ70051.1| tRNA pseudouridylate synthase I [Cupriavidus taiwanensis LMG 19424] Length = 272 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 91/250 (36%), Positives = 132/250 (52%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLEDAIERFAGVRLLTTVAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D P + +NA+L S + VD FHARF A R Y Y + T Sbjct: 61 VIHLDTELVREPFSWVRGVNAFLPPSIALQWAL--PVDVGFHARFLAYERMYYYALYTGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + GRA + LD E MR AA HL+G HDF+ FR+ CQA SP++T+ Sbjct: 119 HRVPMVHGRAGYQMLPPGQRLDVEAMRAAAAHLIGEHDFSAFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN + +R A +FLH +R+ +G L VG ++ + + L +DRK P P Sbjct: 179 IRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRRRYPPDWMAQVLAGRDRKLAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 239 DGLYLVGVKY 248 >gi|104773573|ref|YP_618553.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422654|emb|CAI97262.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 263 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 85/252 (33%), Positives = 136/252 (53%), Gaps = 8/252 (3%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHA 57 M+ RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH+ Sbjct: 1 MMTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHS 60 Query: 58 LRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 VGQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRV 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + + Sbjct: 119 SLDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVN 178 Query: 177 V--NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 V + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 VALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTA 238 Query: 235 PPEGLYFDSVEY 246 GLY V Y Sbjct: 239 QACGLYLYHVFY 250 >gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181] Length = 264 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + YNG G+ GWQ+Q + +IQG IE A+ + + V+ H +GRTDSGVHAL Q+ Sbjct: 1 MRIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + K +NA+L +I + + + FHAR S + R Y Y +I Sbjct: 61 IHFDTTKNRPLTAWVKGVNAFL--PSSIKVRWAKNISESFHARHSVLEREYQYLLIKDTN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ A LD N+ A + G HDF++FRS CQA SP+RTI+ F FG Sbjct: 119 NSAIFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + A FLH QIR+ + ++ V + + ++ L +DR P P GLY Sbjct: 179 NTYLFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYL 238 Query: 242 DSVEY 246 +++Y Sbjct: 239 SNIKY 243 >gi|146307739|ref|YP_001188204.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] gi|145575940|gb|ABP85472.1| tRNA pseudouridine synthase A [Pseudomonas mendocina ymp] Length = 287 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 126/246 (51%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ N +SIQG +E A+ V G E + + AGRTD+ VHA Q Sbjct: 19 RIALGLEYKGARYRGFQRQAGNVASIQGCLESALSKVAGGEPINIMCAGRTDASVHASGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L + IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VVHFDTAVERPLHAWIMGANMNL--PNDISVTWARVMPAHFHARFSAMARRYRYVIYNDP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD MR AA+ LVG HDF+ FR+ CQA SPI+T+ H V Sbjct: 137 IRPAHMAEEVTWNHRPLDVTRMREAARALVGTHDFSAFRATQCQAKSPIKTVHHLQVIEH 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH +R+ G L +G G+ + L+ DR+ G A P GLY Sbjct: 197 GCFIVLDIRANAFLHHMVRNIAGVLMAIGAGERPVEWAREVLERADRRSGGVTAHPYGLY 256 Query: 241 FDSVEY 246 VEY Sbjct: 257 LVQVEY 262 >gi|171463727|ref|YP_001797840.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] gi|226708657|sp|B1XV49|TRUA_POLNS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171193265|gb|ACB44226.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 276 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 88/255 (34%), Positives = 133/255 (52%), Gaps = 12/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE------IVVVHGAGRTDSGV 55 +R + ++Y+GS Y GWQ Q N +++Q +EKAI GE + AGRTD+GV Sbjct: 1 MRIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL QV HFD E + +N++L S I+ V ++F ARFSA R Y+Y Sbjct: 61 HALGQVVHFDTNVEREDFSWVRGVNSFLSSSIVINW--AKPVSEEFCARFSAYEREYIYA 118 Query: 116 IITRQAPLALEKGR----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + R + D E M+ +A+ L+G HDF++FRS CQ+ +PI+T Sbjct: 119 LHAGPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKT 178 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I ++ S + R+ +FLH IR+ VG +G GK TS + + L A++R+ Sbjct: 179 IYLIEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAA 238 Query: 232 PLAPPEGLYFDSVEY 246 P +GLY + Y Sbjct: 239 PTFMADGLYLAKITY 253 >gi|159027087|emb|CAO89272.1| truA [Microcystis aeruginosa PCC 7806] Length = 271 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ + S+Q IEKA+ + G V +HGAGRTDSGVHA QVA Sbjct: 8 RIALVIQYVGTNFHGWQRQPHHRSVQEEIEKALADILGHAVTLHGAGRTDSGVHAAAQVA 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF P K LNA L D I I + V ++HARFSA+ R Y Y + T P Sbjct: 68 HFQQQSPIPPAHWAKVLNARL--DDDIVIRASAQVPDRWHARFSALWRRYRYTLYTDPIP 125 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD + M A L+G+H F + + + G Sbjct: 126 NLFVSPFSWHYYHRPLDADLMARALAPLLGKHHLAAFHRANSSRDHSWVEVQGVECYRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + A FL+ +R VG L VG G+ + + Q R+ AP +GL Sbjct: 186 PFVQMEIQANGFLYGMVRLLVGMLVEVGTGERSLENFTDIWVNQRRELVKYAAPAKGLCL 245 Query: 242 DSVEYS 247 V Y+ Sbjct: 246 LRVGYA 251 >gi|42559808|sp|Q89BP1|TRUA_BRAJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 245 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 124/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ +FGWQ Q S+QG++E A+ +TG + VHGAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFFGWQVQDTLPSVQGALEAAVKAMTGADLRVHGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P LNA+L+ I++L IV F ARFSA++R Y YRI+ + Sbjct: 61 VAHVDIEKQFPPGRFRDGLNAHLR-PHPIAVLEAEIVPDTFEARFSAVKRHYRYRIVNTR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LAL+ G AW +P+ LD + M AA+ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 ANLALDIGHAWRVPRRLDSDAMHAAARRLLGKHDFTTFRDTECQAKSPEKTLDQLDVLRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I ARSFLH+Q+RS VGSL VG+G+WT+ DL AL A++R CG +APP+GLY Sbjct: 180 GREITIITSARSFLHSQVRSMVGSLVWVGEGRWTADDLSAALAARNRAACGIVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|30248700|ref|NP_840770.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] gi|42559793|sp|Q820P8|TRUA_NITEU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|30180295|emb|CAD84602.1| tRNA pseudouridine synthase [Nitrosomonas europaea ATCC 19718] Length = 272 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+G GY GWQ+Q S+Q +E A+ V G + V AGRTD+GVHAL QV Sbjct: 12 VKIVLALEYDGRGYCGWQKQPGCLSVQSRLESALSGVAGRQIQVVAAGRTDAGVHALCQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H + + NA L ISIL S V FHARFSA R+YLY +++R A Sbjct: 72 VHLETCVRRPLNAWIRGTNALL--PGDISILEASEVSDDFHARFSATERTYLYYLLSRPA 129 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G+ + LD E M++AA+ L+G+HDF+ FRS CQ+ + IR + +++ Sbjct: 130 RPGIHHGKIGWVHYPLDLEKMQMAAKLLIGKHDFSAFRSSECQSRTAIRQLTRLNISQHQ 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L A +FLH +R+ +G L +G GK+ + L+ +DR P P+GLY Sbjct: 190 QLFVFEFCANAFLHHMVRNILGGLVYIGRGKYPPEWMRILLEKRDRTLAAPTFSPDGLYL 249 Query: 242 DSVEY 246 V Y Sbjct: 250 SGVRY 254 >gi|239618279|ref|YP_002941601.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] gi|259550401|sp|C5CGS8|TRUA_KOSOT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239507110|gb|ACR80597.1| tRNA pseudouridine synthase A [Kosmotoga olearia TBF 19.5.1] Length = 250 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+GS +FG+Q Q N ++QG E+A+ + + GAGRTD+GVHA Q Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQ 60 Query: 61 VAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V F + P + ALNA L D I + + V F RF+A +R Y Y I+ Sbjct: 61 VIAFTSNLDRLTPKHMKDALNANL--PDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + W P +D MR A+++L+G HDFT+FR+ H S+ + Sbjct: 119 KEPDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRTGHDDRSTIRTITGIRILRL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+I IRV SFL +R+ VG L VG G ++ L+A+DR + AP GL Sbjct: 179 QKNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAHGL 238 Query: 240 YFDSVEY 246 V + Sbjct: 239 VLHKVIF 245 >gi|58040265|ref|YP_192229.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] gi|62901153|sp|Q5FPX3|TRUA_GLUOX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58002679|gb|AAW61573.1| tRNA pseudouridine synthase A [Gluconobacter oxydans 621H] Length = 275 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQV 61 R+ + IEY+G+GY GWQ+Q +G+SIQG IE A + V AGRTD+GVHA V Sbjct: 22 RWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMV 81 Query: 62 AHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D + + + +LK + +L + V +++ARFSA RSY Y I+ R Sbjct: 82 IHLDFPDDAPIDARQIRDGMGYHLK-PHRVVVLETAKVGPEWNARFSATWRSYRYTILNR 140 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A L + R W I + LD + M+ AA HL+G HDFT+FR++ CQA SPIRT+D +++ Sbjct: 141 PARPGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHR 200 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ I ARSFLH Q+R+ G+L ++G +W + + L+A+DR G APPEGL Sbjct: 201 DGELVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGL 260 Query: 240 YFDSVEY 246 V Y Sbjct: 261 CLMDVGY 267 >gi|258592098|emb|CBE68403.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [NC10 bacterium 'Dutch sediment'] Length = 263 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+G+ Y GWQ Q ++IQG+++ A+ + G+ V V GAGRTD+GVHA Q Sbjct: 1 MTTFKLTIEYDGTDYHGWQVQPGMTTIQGTLQGAVARIVGKDVHVMGAGRTDAGVHAHGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P +AL + L I + + +D FHA++SA + Y Y ++TR Sbjct: 61 VASLRTEFHHPPDTFRRALTSVL--PSDIVVTAVEEMDDDFHAQYSAQWKRYRYSLLTRP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P A+E+ +P L + M +AA LVG HDF+ F++ H A SP+RT+ + Sbjct: 119 YPSAIERRYTLFVPYPLQTDAMAVAAGSLVGTHDFSAFQAAHSSAESPVRTVLVAEFRQH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +VA FL IR +G+L +G G+ L + +DR + P GL Sbjct: 179 GDHLLFEIVADGFLRHMIRIIMGTLLDIGRGRLQVEALHIIREGRDRNQASKTISPHGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LLEVGY 244 >gi|221068666|ref|ZP_03544771.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] gi|220713689|gb|EED69057.1| tRNA pseudouridine synthase A [Comamonas testosteroni KF-1] Length = 276 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 14/259 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTDSGVH L QV Sbjct: 1 MRIALGVSYNGQAYRGWQSQPDGNTVQDKLEAALGRFAAQEVSTICAGRTDSGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD + P + N +L ++ FH+R A R Y Y ++ Sbjct: 61 VHFDTGLQRTPNSWVRGTNTFLPKDIAVQWAAEVADGPDGFHSRACATARRYAYVLLQSP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 ++++GR + ++LD + MR AA L+G HDF++FR+ CQA SP++T+ D++ Sbjct: 121 VRPSVDQGRVGWVFQTLDAQRMRAAADLLLGEHDFSSFRAAGCQAKSPVKTLRRIDIHYR 180 Query: 179 -----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G L VG G +++ L+A+ R Sbjct: 181 PAGQAPMRDTQMQCGYWRFEFEGSAFLHHMIRNIMGCLIYVGQGSKPVEWMQQVLEARSR 240 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P P+GLYF Y Sbjct: 241 EVAAPTFSPDGLYFLGPIY 259 >gi|315659196|ref|ZP_07912060.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] gi|315495621|gb|EFU83952.1| tRNA pseudouridine synthase A [Staphylococcus lugdunensis M23590] Length = 264 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q G ++Q EK + + V +H + RTD GVHAL Q Sbjct: 1 MRILVNICYQGSNFLGFQIQNQGRTVQQQFEKILKRMHRHDVRIHPSSRTDRGVHALEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + + VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELKIADGQWQYAMNSAL--PDDIYVKEVKQVDSDFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G +P+ L+ E M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 KNPFESGLKTYVPQQLNIERMNEAAQKFIGTHDFTGFCSQKTEVESKVRTLYQSEIEMTT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R + L VG G + ++ L+ ++R AP EGLY Sbjct: 179 YGFDYIVTGSGFLYNMVRVLMAFLIGVGKGNRSPEEVTALLEQKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|192289057|ref|YP_001989662.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] gi|192282806|gb|ACE99186.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris TIE-1] Length = 245 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 127/246 (51%), Positives = 168/246 (68%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPALPSVQGALEVAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+L+ + +++L IV F ARFSA+RR Y YRI R+ Sbjct: 61 VAHVDIPKPFRADKLRDALNAHLR-PNPVAVLAAEIVPDTFEARFSAVRRHYRYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LAL+ G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALDLGKVWRVPKQLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+WT+ DL AL A+ R CGP+APPEGLY Sbjct: 180 GDAVDIITNARSYLHSQVRSMVGSLVWVGEGRWTADDLAAALAARRRSACGPVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LMQVDY 245 >gi|56751899|ref|YP_172600.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 6301] gi|60416392|sp|O24712|TRUA_SYNP6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56686858|dbj|BAD80080.1| tRNA pseudouridine synthase [Synechococcus elongatus PCC 6301] Length = 294 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QV Sbjct: 14 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN L ++I +IV +HARFSA R Y Y I T Sbjct: 74 AHFETTSPIPAHRWPSVLNGRLT--PDLNIRAAAIVPANWHARFSASYRRYRYTIYTDPC 131 Query: 122 PLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W ++ CEN M+ A Q LVG H F+ + + V Sbjct: 132 PNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRR 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 192 DSLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLC 251 Query: 241 FDSVEY 246 + Y Sbjct: 252 LLRIGY 257 >gi|94987504|ref|YP_595437.1| tRNA pseudouridine synthase A [Lawsonia intracellularis PHE/MN1-00] gi|123082124|sp|Q1MPG1|TRUA_LAWIP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|94731753|emb|CAJ55116.1| Pseudouridylate synthase [Lawsonia intracellularis PHE/MN1-00] Length = 257 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 114/259 (44%), Gaps = 14/259 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + Y G+ Y GWQ Q +IQ ++EK I + G+ V V GAGRTD+GV Sbjct: 1 MPRLKFTLAYVGTAYHGWQTQRRKSLPELPTIQSTLEKVIASIIGKPVRVCGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + + LNA L + + FHA+ A+++ Y YR Sbjct: 61 HAEGQVAHVDIPESKLKLDWQLVLNASLPKNIRVVHSLYVEDT--FHAQHDAVQKLYAYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT---- 171 + LD E M A+ L+G H+F + ++ + S +RT Sbjct: 119 LWLNHRYTPPVLYPFVWSCGRLDLEAMDKASTFLLGTHNFVSLQNRGTKLLSTVRTISAL 178 Query: 172 ---IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 F + + + A FL +R+ +G L LVG K + L+A+DR+ Sbjct: 179 YREPSQFFSLNESHEVTWFFKADGFLKQMVRNIMGLLVLVGRRKIQPEKIPYILEAKDRR 238 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P AP GL V YS Sbjct: 239 HSAPTAPAHGLTLKKVFYS 257 >gi|81301016|ref|YP_401224.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] gi|81169897|gb|ABB58237.1| tRNA pseudouridine synthase A [Synechococcus elongatus PCC 7942] Length = 294 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVHA QV Sbjct: 14 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHAAAQV 73 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN L ++I +IV +HARFSA R Y Y I T Sbjct: 74 AHFETTSPIPAHRWPSVLNGRLT--PDLNIRAAAIVPANWHARFSASYRRYRYTIYTDPC 131 Query: 122 PLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W ++ CEN M+ A Q LVG H F+ + + V Sbjct: 132 PNLFLNSYVWHYYQAPLCENQMQAALQTLVGYHHLAAFQRSGSKRQHAWVHVQDAWVRRR 191 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI V A FL+ IR VG L VG+G + Q R APP+GL Sbjct: 192 DSLIEIEVQASGFLYGMIRLLVGLLVQVGEGSRSLESFTDIWVNQRRDRVRHAAPPQGLC 251 Query: 241 FDSVEY 246 + Y Sbjct: 252 LLRIGY 257 >gi|300362359|ref|ZP_07058535.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] gi|300353350|gb|EFJ69222.1| tRNA-pseudouridine synthase I [Lactobacillus gasseri JV-V03] Length = 255 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 6/243 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G + G+Q Q ++QG IE+A+ +T G+ VVVHG+GRTD+GVHA QV HFD Sbjct: 1 MAYDGHLFHGFQIQPKERTVQGVIEEALKKMTKGKRVVVHGSGRTDAGVHAKGQVIHFDY 60 Query: 67 V-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +E + ALNA + + IV+ FH ++S + Y Y + + Sbjct: 61 PGKEIPAKNMMLALNAL--MPIDTVFFDSEIVNSDFHVQYSTKGKWYRYIVDQHRFTDPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDVNSFGNL 183 + P LD + M+ AA+ L+G+HDFT+F + Q +RTI + + Sbjct: 119 NRFYTGHYPYPLDIDLMQRAAKDLIGKHDFTSFAASGGQIVDKVRTIYYVNITSDPDNKK 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + FL+ +R VG+L +G+ K D+ + L A+DR+E AP GLY Sbjct: 179 IIFDFIGNGFLYNMVRILVGTLLEIGNKKRPVDDIPRVLAAKDRQEVRTTAPASGLYLQH 238 Query: 244 VEY 246 V Y Sbjct: 239 VFY 241 >gi|212712250|ref|ZP_03320378.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] gi|212684996|gb|EEB44524.1| hypothetical protein PROVALCAL_03336 [Providencia alcalifaciens DSM 30120] Length = 271 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + IEYNGS Y+GWQRQ+ S+QG +E A+ + E + V+ AGRTD+GVHA QV Sbjct: 8 HRIALGIEYNGSRYYGWQRQQEVQSVQGCLEAALSKIAAEPISVNCAGRTDAGVHATGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ N +L D I++ VD +FHARFSA R Y Y I + Sbjct: 68 VHFETSAIRKEAAWTMGTNTHL--PDDIAVRWCKPVDDEFHARFSATARRYRYVIFNHRY 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ L+G DFT+FR++ CQ+ +P R + H +V G Sbjct: 126 RPAILSNGVTHFHFPLDEKRMHQAAQALLGERDFTSFRAVQCQSKTPWRNVMHVNVTRHG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGLY Sbjct: 186 NYVVVDIKANAFVHHMVRNIVGSLLEIGCGNQDIDWMAHLLELKDRTKAAATAKAEGLYL 245 Query: 242 DSVEY 246 SV+Y Sbjct: 246 VSVDY 250 >gi|123969273|ref|YP_001010131.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] gi|166228750|sp|A2BTB3|TRUA_PROMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123199383|gb|ABM71024.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. AS9601] Length = 268 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN ++IQ ++KA+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNANTIQEILDKALLKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V +HA +SA R Y Y I + Sbjct: 61 VIHFDIDCVIPGNSYSDVLNSLL--PSTIRILESVEVKDSWHACYSASYRHYRYVINNSK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + K LD M A++ + G HDF F+ + I I + DV Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLNASKKMEGEHDFFAFQKSGSNRQNSITKIKNIDVKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K + + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|290475958|ref|YP_003468853.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] gi|289175286|emb|CBJ82089.1| pseudouridylate synthase I [Xenorhabdus bovienii SS-2004] Length = 279 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVKSVQECLEKALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + +N++L I++ + VD +FHARFSA R Y Y I + Sbjct: 76 VHFKTSAQRKDAAWTMGVNSHL--PPDIAVRWVKTVDDEFHARFSATARRYRYIIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ G Sbjct: 134 RPAVLAQGVTHFHYLLDERKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRHG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +F+H +R+ VGSL +G + + L +DR + A EGLY Sbjct: 194 HYVVVDIKANAFVHHMVRNIVGSLLEIGCSNQDIGWMAELLALKDRTKAAATAKAEGLYL 253 Query: 242 DSVEY 246 +V+Y Sbjct: 254 VAVDY 258 >gi|218282056|ref|ZP_03488361.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] gi|218216974|gb|EEC90512.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989] Length = 247 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 110/244 (45%), Gaps = 2/244 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+G Y GWQ+Q+N IQ IE+A++ +T E V V +GRTD+GVHA QV H Sbjct: 3 VKALVSYDGFNYAGWQKQENALGIQQVIEEALYKITKENVDVVASGRTDAGVHAFGQVFH 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ + + +ALNA L I IL + FHARFSA+ + Y Y Sbjct: 63 FETNKNIPAIQYERALNALL--PKDIRILKTEEMPDDFHARFSAVGKRYDYYCSYDIKNP 120 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 K R L K + L + S ++TI + ++ G Sbjct: 121 FNYKYRNLLTKKLDIEAMKNASKVFLGSHDFTSFASSKIDPRKPRVKTISNIEIIEEGMD 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL Q+R G+L VG K D+++ L A+D+ C A GLY Sbjct: 181 VHFIFEGTGFLRYQVRMMTGTLIAVGQHKIGVDDVQRMLDAKDKSACRYNASSCGLYLVE 240 Query: 244 VEYS 247 V+Y+ Sbjct: 241 VKYN 244 >gi|320530646|ref|ZP_08031695.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] gi|320137097|gb|EFW29030.1| tRNA pseudouridine synthase A [Selenomonas artemidis F0399] Length = 258 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA Q Sbjct: 6 RNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGEPVELAAAGRTDTGVHAYGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L +A+N L I+++ + F AR S+ ++YLYRI Sbjct: 66 VVNFFTDGRIPVAQLPRAVNGLL--PPDIAVMAAWEAGRDFSARHSSTGKAYLYRIERCT 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW I + LD MR + LVG HD+++FR+ SP+RT+D ++ Sbjct: 124 VPNPFTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEE 183 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GL Sbjct: 184 EGGQLSCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGL 243 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 244 YLLHVDYA 251 >gi|148258520|ref|YP_001243105.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] gi|166228680|sp|A5ESQ5|TRUA_BRASB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146410693|gb|ABQ39199.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. BTAi1] Length = 245 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG++E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFCGWQLQETLPSVQGALEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +++ P L ALNA+L+ + +++L IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIAKDFRPDKLRDALNAHLR-PNPVAVLEAEIVSDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M AAQ L+GRHDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHAAAQRLIGRHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A++R CG +APPEGLY Sbjct: 180 GDAVTILTSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARNRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|288924968|ref|ZP_06418904.1| tRNA pseudouridine synthase A [Prevotella buccae D17] gi|288338158|gb|EFC76508.1| tRNA pseudouridine synthase A [Prevotella buccae D17] Length = 261 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 15/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q NG+S+Q +EKA+ L+ + GAGRTD+GVHA Sbjct: 1 MQRYFIYLNYDGTNYHGWQIQPNGNSVQEELEKALSLLLRTKTEIVGAGRTDAGVHARLM 60 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD ++ LC LN L ISI + V + HARFSA+ R Sbjct: 61 VAHFDYEVGTTTEGQAAKDIDCPQLCYKLNRLL--PRDISIRKIIPVAQDMHARFSAVAR 118 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 +Y Y I T + E+ ++ +P +LD + MR + L + DF F S Sbjct: 119 TYHYYIHT--GKMPFERHYSYQMPYALDFDAMREGCELLKRQTDFAAFCKAGADNKSTCC 176 Query: 171 TIDHFDVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T+ + A FL +R+ VG+L +G K T ++A R + Sbjct: 177 TVTEARWVKTSPGTWYFEITANRFLRNMVRAVVGTLVDLGRHKITLEQFRHIVEAGRRSD 236 Query: 230 CGPLAPPEGLYFDSVEY 246 G P L+ + VEY Sbjct: 237 AGESMPGHALFLERVEY 253 >gi|225025215|ref|ZP_03714407.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] gi|224941973|gb|EEG23182.1| hypothetical protein EIKCOROL_02112 [Eikenella corrodens ATCC 23834] Length = 269 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+GS +FGWQ+Q +G ++Q ++E A+ + E + V AGRTD+GVHA Q Sbjct: 7 KRRALFVSYDGSRFFGWQKQADGIATVQSALEAALSELAQERISVVTAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +NA L + +++ + V +FHARF A R Y Y + + Sbjct: 67 VVHFDSAARRPDQAWVRGVNALL--PEGVAVWRVQDVAPEFHARFDACGRRYRYLLQSAP 124 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA +LD MR AA LVG HDF++FR+ CQA SP++T+ + Sbjct: 125 VRSPLLVGRAGWTHYALDMAAMRQAAALLVGEHDFSSFRAAECQAKSPVKTLYRVALCGT 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + +FLH +R+ +G+L VG GK + L A+ RK P P+GLY Sbjct: 185 PELMAVDFHGNAFLHHMVRNLMGALVYVGCGKLSVDGFAGLLAARSRKLAPPTFMPDGLY 244 Query: 241 FDSVEY 246 ++Y Sbjct: 245 LTGIDY 250 >gi|89900579|ref|YP_523050.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] gi|123278889|sp|Q21XI4|TRUA_RHOFD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89345316|gb|ABD69519.1| tRNA pseudouridine synthase A [Rhodoferax ferrireducens T118] Length = 260 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + ++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRLALGVSYNGQAYQGWQSQLSRQTVQDQLEMALSKLASHRVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + NA L I++ V +FH R SA+ R Y Y ++ Sbjct: 61 IHFDTPLDRAPNSWVRGTNALL--PRDIAVEWARPVPPEFHCRASALSRRYAYILLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++ G+ K L+ M+ AA HL+G HDF++FR+ CQA SP++ + D++ G Sbjct: 119 RPSIDAGQVGWTFKPLEQVAMQQAASHLLGEHDFSSFRASACQALSPVKMLQRLDISRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG GK L++ L A++R P GLYF Sbjct: 179 ACWRFEFEANAFLHHMIRNIMGCLITVGQGKKPPEWLKEVLLARNRNVAAPTFSAHGLYF 238 Query: 242 DSVEYS 247 Y+ Sbjct: 239 LGPRYA 244 >gi|260887817|ref|ZP_05899080.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|330838710|ref|YP_004413290.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|260862493|gb|EEX76993.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] gi|329746474|gb|AEB99830.1| tRNA pseudouridine synthase A [Selenomonas sputigena ATCC 35185] Length = 258 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 C+ + Y+G+ Y G+QRQ ++Q +E+ + LV G+ + + AGRTD+GVHA+ Q Sbjct: 14 RNVCLTVAYDGTAYHGFQRQSPPIRAVQNVLEEKLALVFGDAIELAAAGRTDAGVHAMGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + +A+N+ L I + + F AR SA +SY+YRI Sbjct: 74 VVNFFTDGRIPTERIVRAMNSVL--PPDIVVKAAREEGRDFSARHSAKSKSYIYRIQEGD 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW + LD M AA L+G HDF+ FR+ P+RT+ + Sbjct: 132 TPNPFSERYAWYVGTPLDLAAMNEAAALLLGTHDFSAFRAAGGAPMLPVRTMYSAEGRRI 191 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 E R A FL+ R+ VG+L VG G+ T D L +++RK AP GL Sbjct: 192 EGERIEFRFHANGFLYHMARNIVGTLVDVGKGRRTRADFAAILASRERKRASATAPACGL 251 Query: 240 YFDSVEY 246 + +SVEY Sbjct: 252 FLESVEY 258 >gi|238897977|ref|YP_002923657.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465735|gb|ACQ67509.1| pseudouridylate synthase I [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 277 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 130/246 (52%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEYNG Y+GWQRQ++ SIQ +E A+ + E + V AGRTD+GVHA QV Sbjct: 15 HKIALGIEYNGYRYYGWQRQEHVPSIQSCLEHALSKIANESITVCCAGRTDAGVHATAQV 74 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF V +N YL I++ V+K FHARFSA R Y Y I + Sbjct: 75 VHFLTKAVRKEVSWIMGVNTYL--PPDITVRWAKKVEKDFHARFSATARRYRYLIFNDRH 132 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 AL LD + M AAQ ++G +DF++FR+ CQ+ +P R + H V+ F Sbjct: 133 RPALFSEGLAHYSMPLDEKKMERAAQCVLGENDFSSFRAAQCQSKTPWRYVHHLKVSRFG 192 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + + A +FLH +R+ VGSL VG G+ + + L +DR + A GLY Sbjct: 193 MHYIMVDIKANAFLHHMVRNIVGSLIEVGIGRQNEHWIAQLLALKDRTQAAVTAKASGLY 252 Query: 241 FDSVEY 246 SV+Y Sbjct: 253 LVSVDY 258 >gi|50083718|ref|YP_045228.1| tRNA pseudouridine synthase A [Acinetobacter sp. ADP1] gi|51316594|sp|Q6FEV2|TRUA_ACIAD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|49529694|emb|CAG67406.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ADP1] Length = 271 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G Y GWQ Q+ SIQ +IEK + + E +++HGAGRTD+GVHA Sbjct: 2 MQRYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATN 61 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + ++ FHARF A R Y Y + Sbjct: 62 MVAHFDTNAIRPQRGWLMGANSQL--PKDISIQWIKEMNTDFHARFKATARRYRYVVYNT 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + ++LD + M +AA+ G H+F TFR+ CQ+S P+R + H + Sbjct: 120 LNRPALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSHCRLTR 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ AQDRK G AP +GL Sbjct: 180 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTAPADGL 239 Query: 240 YFDSVEY 246 YF Y Sbjct: 240 YFIQAYY 246 >gi|116513570|ref|YP_812476.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275660|sp|Q04BY4|TRUA_LACDB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116092885|gb|ABJ58038.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125205|gb|ADY84535.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 262 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 7/251 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 ACGLYLYHVFY 249 >gi|313890306|ref|ZP_07823938.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] gi|313121292|gb|EFR44399.1| tRNA pseudouridine synthase A [Streptococcus pseudoporcinus SPIN 20026] Length = 249 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 MIRY II Y+GS + G+QRQ N +IQ IEK + + G+ + + GAGRTD+GVHA Sbjct: 1 MIRYKAIISYDGSQFSGFQRQTNARTIQEEIEKTLMRLNKGKTITIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNDFHARYSKHLKTYEFIVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD +++A + LVG HDFT F + + +RT+ D N Sbjct: 119 RPKNPMMRQYATHYPYPLDFSLIKLAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCNF 178 Query: 180 --FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQFLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|320537307|ref|ZP_08037262.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] gi|320145772|gb|EFW37433.1| tRNA pseudouridine synthase A [Treponema phagedenis F0421] Length = 261 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 121/251 (48%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + I Y+G+ + GWQ+Q KNG +IQG IEKA + + + GAGRTD+GVH Sbjct: 5 RNILLRISYDGTFFSGWQKQVKNGIETFPTIQGEIEKAASKIHKQKKEIIGAGRTDTGVH 64 Query: 57 ALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ Q A+F + + A N+ L I +++ V Q HARFSA R+Y Y Sbjct: 65 AIGQAANFFTEIQTIEAKSFIPAFNSLL--PKQIRVVDAQEVSPQLHARFSAQARTYRYF 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + A E+ W I + D + A L G D T+F Q++S R I Sbjct: 123 IQCAKREFAHEQAYCWQIKRYPDISTLNRYAAVLRGELDCTSFSFAKDQSASKSRYIFSA 182 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + A +FL +RS G+L +T D +K L+ +DR GP AP Sbjct: 183 HFFIEKDFLVFEISANAFLWRMVRSLTGTLLRCEKEHYTQNDFKKILELKDRGLAGPTAP 242 Query: 236 PEGLYFDSVEY 246 P+GL+ + Y Sbjct: 243 PQGLFLWHITY 253 >gi|261364797|ref|ZP_05977680.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] gi|288566820|gb|EFC88380.1| tRNA pseudouridine synthase A [Neisseria mucosa ATCC 25996] Length = 270 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ +I+ Y+GS ++GWQ+Q G ++Q ++E A+ + E + AGRTD+GVHA QV Sbjct: 13 RWALILSYDGSRFYGWQKQAGGLPTVQTTLEYALSQIASENIRTIVAGRTDTGVHATAQV 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +NA+L + +S+L V FHARF A R Y Y + + Sbjct: 73 IHFDTTVVRPEQAWVRGVNAHL--PEGVSVLFAQQVASHFHARFDAYGRRYRYLLESSPV 130 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +GR LD + M+ AA L G HDF++FR+ CQA SPI+T+ ++ Sbjct: 131 RSPILQGRVGWTHLKLDPDKMQQAALLLEGEHDFSSFRAAECQAKSPIKTLYSAKISGTP 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +++ + +FLH +R+ +G+L VG G+ + + + + + R + P P+GLY Sbjct: 191 QFLKLDLHGNAFLHHMVRNIMGALVYVGSGRLSVSGFQTLIGERSRLKAPPTFMPDGLYL 250 Query: 242 DSVEY 246 V+Y Sbjct: 251 TGVDY 255 >gi|229552739|ref|ZP_04441464.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] gi|229313945|gb|EEN79918.1| tRNA-pseudouridine synthase I [Lactobacillus rhamnosus LMS2-1] Length = 242 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 118/244 (48%), Gaps = 5/244 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G+ + G+Q Q ++QG ++KA+ + G+ V V G+GRTDSGVHAL QV F Sbjct: 1 MTLAYDGTNFAGYQVQPKQRTVQGVLQKALTKMAKGQPVHVDGSGRTDSGVHALGQVISF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 D + +A+N+ + I IL IV FHAR+SA + Y YR+ Sbjct: 61 DYPGNIPAESMLRAMNSL--MPLDIEILKAEIVAADFHARYSAKGKRYRYRVARGYYTNP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + P LD + + +A + LVG HDFT+F + +RTI V Sbjct: 119 FNRLYTGHYPYKLDVKRIEVALKDLVGTHDFTSFAASGGVIKDKVRTIYEATVEEDPATN 178 Query: 185 E--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 E FL+ +R V + +G+G+ D ++ + +DR++ AP GLY Sbjct: 179 ELIFEFYGNGFLYNMVRILVATALEIGNGRRDVHDFQRLFEVKDRQQARGTAPASGLYLK 238 Query: 243 SVEY 246 V Y Sbjct: 239 EVYY 242 >gi|323141117|ref|ZP_08076020.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] gi|322414383|gb|EFY05199.1| tRNA pseudouridine synthase A [Phascolarctobacterium sp. YIT 12067] Length = 250 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 130/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +++ Y+GS Y G+Q+QKN ++Q +E+A+ ++ GE VV G+GRTD+GVHAL Q Sbjct: 1 MRTIKLVVAYDGSAYHGFQKQKNVQTVQNVLEEALTMLCGEKVVTAGSGRTDTGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F L +A + L + I +++ + + FHARFSA ++Y Y+++ + Sbjct: 61 TVTFTTNGRIPCANLVRAAASLL--PEDIVVVSAEEMPEGFHARFSARWKTYHYKLLVNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AW + + L+ + M AA+ L+G HDF+ FRS +SPI+TI Sbjct: 119 HVNPFMVRYAWQLRQQLEVKAMNEAAELLLGTHDFSAFRSSGSVDTSPIKTIFAAKWQQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I R+ FL+ +R+ V S+ VG GK T D L AQ + AP +GLY Sbjct: 179 GEEILFRISGDGFLYHMVRNIVWSMVQVGMGKRTVQDFAAELTAQRCEFLNEPAPAQGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LAEVGY 244 >gi|281355314|ref|ZP_06241808.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] gi|281318194|gb|EFB02214.1| tRNA pseudouridine synthase A [Victivallis vadensis ATCC BAA-548] Length = 272 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 RY + I Y+G+ Y GWQ Q + ++Q +++ + + G+ + + G+ RTD+GVHA R Sbjct: 12 KRYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSSRTDAGVHAQRF 71 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 A + + + +A+N L I + + V +FHAR+ A+ ++Y Y + Sbjct: 72 AASYLTPVRPDIPTDKILRAVNRQL--PGDIKLRTVREVPLEFHARYDALGKAYTYVL-N 128 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P W +D E +R A+Q L G HD+++F +RTI DV Sbjct: 129 LGDPSPFTDRYTWRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLIDEAVRTIYRIDVQ 188 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 FG + V FL+ IR +G+L+ G GK + + + L+A DR APP G Sbjct: 189 EFGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEACDRTVAPETAPPNG 248 Query: 239 LYFDSVEYS 247 L+ V Y+ Sbjct: 249 LFLMKVFYT 257 >gi|298376183|ref|ZP_06986139.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] gi|298267220|gb|EFI08877.1| tRNA pseudouridine synthase A [Bacteroides sp. 3_1_19] Length = 265 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG + GWQ Q NG ++Q SIE+A+ ++ V + GAGRTD+GVHA + Sbjct: 15 RRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLMI 74 Query: 62 AHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD ++ + LN L I++ + V + HARF A R+Y Y + T++ Sbjct: 75 AHFDWEEPIGDLVFLAEKLNRLL--PKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P E +P LD E M A + L DFT+F +H + I H Sbjct: 133 DPFNHELVY--KLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQE 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ + A FL +R+ VG+L VG G+ T ++A+DR + G P L+ Sbjct: 191 GDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALF 250 Query: 241 FDSVEY 246 V Y Sbjct: 251 LVDVTY 256 >gi|113868577|ref|YP_727066.1| tRNA pseudouridine synthase A [Ralstonia eutropha H16] gi|123032833|sp|Q0K8H3|TRUA_RALEH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|113527353|emb|CAJ93698.1| transfer RNA-pseudouridine synthase I [Ralstonia eutropha H16] Length = 272 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 135/250 (54%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GWQ Q + +++Q +E AI G ++ AGRTD+GVHAL Q Sbjct: 1 MNRIALGLHYDGAAFSGWQSQPHRNTVQDHLENAIERFAGVRLLTTVAGRTDTGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D E P + +NA+L S + VD+ FHARF A R Y Y + T Sbjct: 61 VIHLDTALEREPFSWVRGVNAFLPPSIALQWAL--PVDQGFHARFLAFERMYYYALYTGP 118 Query: 121 APLALEKGRAWLIP----KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L GRA + LD + MR AA L+G HDF+ FR+ CQA SP++T+ Sbjct: 119 HRVPLVHGRAGYQMLPPGQRLDVDAMREAAACLLGEHDFSAFRAAECQAKSPVKTMYDVT 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN + +R A +FLH +R+ +G L VG G++ + L + L ++RK P P Sbjct: 179 IRDDGNWVFLRFRASAFLHHMVRNLMGCLVAVGRGRYPAHWLAQVLAGRERKLAAPTFMP 238 Query: 237 EGLYFDSVEY 246 +GLY V+Y Sbjct: 239 DGLYLVGVKY 248 >gi|89093241|ref|ZP_01166191.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] gi|89082537|gb|EAR61759.1| tRNA-pseudouridine synthase I [Oceanospirillum sp. MED92] Length = 283 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 136/246 (55%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 RY + +EY+G+ Y GWQ Q+ + SIQ ++EKA+ + V V AGRTD+ V+A Q Sbjct: 23 RYALCVEYSGAEYRGWQIQREGDVPSIQATVEKALSKIANAPVSVICAGRTDARVNATYQ 82 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD N L D I+I V + FHARFSA+ R Y Y I + Sbjct: 83 IIHFDSPVRRDERAWVMGTNTNL--PDDIAIQWAKQVPESFHARFSALERRYRYLIYSNP 140 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K +D M+ A +HLVG HDFT++R++ CQA SP+RT+ F+V Sbjct: 141 VKPAILPKGITWTYKEMDVARMQEAVKHLVGEHDFTSYRAVGCQAHSPVRTVKEFNVYRE 200 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+ + V A +FLH IR+F G L +G G+ ++ L A+DR++ G APP GLY Sbjct: 201 GRLVILDVRANAFLHHMIRNFAGVLMTIGCGEAEPIWAKEVLDARDRRQGGVTAPPFGLY 260 Query: 241 FDSVEY 246 F +Y Sbjct: 261 FVDAKY 266 >gi|325288607|ref|YP_004264788.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] gi|324964008|gb|ADY54787.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM 8271] Length = 267 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M C+ + Y+G+ Y G+Q Q +G +IQG +EKA + E + + AGRTD GVHA Sbjct: 1 MNNICLRLAYDGTQYHGFQSQPEEHGKTIQGELEKAWKRLAQEEIKIVTAGRTDKGVHAA 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F + A+N+ L + I IL +V +F+AR SA + Y Y+I Sbjct: 61 GQVINFKSAARIPQDKIPIAMNSVL--PEEIRILEAKLVGAEFNARTSAYWKRYDYKIEN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ + + P LD MR AA + G+HDF TF + A S +RT+ H V Sbjct: 119 KRTADVFTRLYSLHEPVPLDLNKMRQAAARIEGKHDFKTFSAAGSNAKSFVRTVYHCKVQ 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S I + + FL+ +R G+L VG GK D+ L++++R G P G Sbjct: 179 SSSGYITVTCIGNGFLYNMVRIITGTLLYVGKGKIVPEDMPGILKSRNRALAGKTVSPAG 238 Query: 239 LYFDSVEY 246 L ++Y Sbjct: 239 LVLRYIDY 246 >gi|268590477|ref|ZP_06124698.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] gi|291314156|gb|EFE54609.1| tRNA pseudouridine synthase A [Providencia rettgeri DSM 1131] Length = 271 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + IEYNGS YFGWQRQ+ S+QG +E+A+ + E + V AGRTD+GVHA QV Sbjct: 9 RIALGIEYNGSRYFGWQRQQEVKSVQGCLEEALSKIAAEPISVFCAGRTDAGVHATGQVV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ N +L I++ V ++FHARFSA R Y Y I + Sbjct: 69 HFETSAIRKEAAWTMGANTHL--PPDIAVRWCKPVAEEFHARFSATARRYRYVIFNHRYR 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD + M AAQ L+G DFT+FR++ CQ+ SP R + H +V+ G+ Sbjct: 127 PAILSSGVTHFHYPLDEKRMHEAAQALLGERDFTSFRAVQCQSKSPWRNVMHVNVSRHGH 186 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + L+ +DR + A EGLY Sbjct: 187 YVVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIDWMAHLLELKDRTKAAATAKAEGLYLV 246 Query: 243 SVEY 246 SV+Y Sbjct: 247 SVDY 250 >gi|298370079|ref|ZP_06981395.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] gi|298281539|gb|EFI23028.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str. F0314] Length = 275 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 132/246 (53%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ +++ Y+GS +FGWQ+Q G ++Q +E AI + GE + V AGRTD+GVHA+ Q Sbjct: 13 QRWILVLSYDGSRFFGWQKQAEGIPTVQAELESAISKIAGENISVTVAGRTDTGVHAVAQ 72 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P + +NAYL D +++L FHARF A R Y Y + + Sbjct: 73 VVHFDTAVFRPPQAWVRGVNAYL--PDGVAVLCAQTTQPHFHARFDAFGRRYRYLLQSAP 130 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L KGRA L+ E MR AA LVG HDF++FR+ CQA SP++TI ++ Sbjct: 131 VRSPLMKGRAGWTHLPLNLERMRQAAALLVGEHDFSSFRAAECQAKSPVKTIYSTEIGGG 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +FLH +R+ +G+L VG G+ ++ + R + P +GLY Sbjct: 191 AEWLYFDIHGNAFLHHMVRNIMGALVYVGCGRLDVGQFADLIKERSRLKAPPTFMSDGLY 250 Query: 241 FDSVEY 246 V+Y Sbjct: 251 LTGVDY 256 >gi|282849896|ref|ZP_06259279.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] gi|282580333|gb|EFB85733.1| tRNA pseudouridine synthase A [Veillonella parvula ATCC 17745] Length = 261 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 126/249 (50%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M +I+ Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA Sbjct: 1 MRNIRIIVAYDGTDLVGYQKQSNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F + +A+ A+ I I +L + + R++ + Y+Y I Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + W + K L+ M+ A LVG HDFTT + + + P++TI V Sbjct: 119 QLIADPLTQRYHWHVKKPLNIARMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + G+ + I V+ FL+ +R+ G L +G G+ D++ L A+DR+ G AP +G Sbjct: 179 ARGSQVTISVIGDGFLYHMVRNIAGLLVDIGLGRRKVEDIKGYLAAKDRRAIGKTAPAQG 238 Query: 239 LYFDSVEYS 247 L + + ++ Sbjct: 239 LCLEEIFFT 247 >gi|319943971|ref|ZP_08018251.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] gi|319742732|gb|EFV95139.1| tRNA pseudouridine synthase A [Lautropia mirabilis ATCC 51599] Length = 307 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 133/249 (53%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 R+ + Y+G + GWQ+Q S+Q ++E A+ V G+ + + AGRTD+GVHA Sbjct: 40 HRWVCGVSYDGRDFCGWQKQPPVPGLAPSVQTTVEAALSAVAGQTIDIRCAGRTDAGVHA 99 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV F + P + NA+L + + D F ARFSA R+Y Y +I Sbjct: 100 LEQVIEFSTTAQRPPTAWVRGANAHLPDTVAVRWAAPLAPDADFDARFSARERTYWYVLI 159 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +GRA + LD M+ AA+ ++G HDF++FR+ CQA++P+RT+ + V Sbjct: 160 DSPVAPPLWQGRAGWTHRPLDVARMQAAARSVLGTHDFSSFRASECQAATPVRTLTEWTV 219 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + +R+ A +FLH +R+ VGSL VGDG+ + + + L A+ R P Sbjct: 220 ERHGAFVMMRLTANAFLHHMVRNLVGSLVYVGDGRRPVSWMAEVLAARSRSAGAPTFAAG 279 Query: 238 GLYFDSVEY 246 GLY SV Y Sbjct: 280 GLYLASVRY 288 >gi|239814424|ref|YP_002943334.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] gi|259550491|sp|C5CSH0|TRUA_VARPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239801001|gb|ACS18068.1| tRNA pseudouridine synthase A [Variovorax paradoxus S110] Length = 270 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 125/249 (50%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q++G ++Q +E A+ + + AGRTD+GVHAL QV Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAAQPIGTLCAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L D I++ V +FH R SA+ R YLY + Sbjct: 61 VHFDTTVEREPFSWMRGTNRFL--PDDIAVQWAQPVPDEFHCRASALARRYLYVLSQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 +L+ GR LD + MR AA LVG+HDF++FR+ CQA SP++ + ++ Sbjct: 119 RPSLDSGRVGWSMHPLDGDAMRAAAALLVGKHDFSSFRASACQARSPVKDLRRIEITRVG 178 Query: 180 --FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 179 SGDRCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWITEVLEARSRKVAAPTFSAN 238 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 239 GLYFLGPLY 247 >gi|262375036|ref|ZP_06068270.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] gi|262310049|gb|EEY91178.1| tRNA pseudouridine synthase A [Acinetobacter lwoffii SH145] Length = 265 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R+ + IE+ G Y GWQ Q +S+Q +IEK + V + + +HGAGRTD+GVHA Sbjct: 1 MQRFAVGIEFCGMHYRGWQTQQPGVASVQETIEKVLSKVADQPISLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D FHARF A R Y Y + Sbjct: 61 MVAHFDTDAVRSERGWLMGCNSQL--PKDISIQWIKEMDHSFHARFKAQARRYRYVVYNH 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + LD E M AA+ G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PVRPALLHKQVTHVYAPLDVEQMIYAAKKFEGTHNFESFRAAACQSNQPVRHVSHCRLIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + + ++ A+DRK G AP +GL Sbjct: 179 HGQYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYAADHIDNIFAAEDRKAAGVTAPADGL 238 Query: 240 YFDSVEY 246 YF +Y Sbjct: 239 YFIHADY 245 >gi|3915176|sp|Q45557|TRUA_BACSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|289265|gb|AAA73188.1| unknown [Bacillus sp. KSM-64] Length = 244 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I+Y+G Y GWQR NG ++IQG IE + + G + + G+GRTD+GVHAL Sbjct: 1 MNNYKLMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ L + + + LN YL IS+ +++V +FH+R++A ++YLY+I Sbjct: 61 QVANVKLSENFTVKEVKEYLNRYL--PHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I K L +NM A+Q VG HDFT F + + + RTI + Sbjct: 119 DYTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQD 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+IRV FL+ +R VG+L VG G+ + L+++DR + G A GL Sbjct: 179 NQGFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQAGF-ADATGL 237 Query: 240 YFDSVEY 246 Y + + + Sbjct: 238 YLEGISF 244 >gi|304405587|ref|ZP_07387246.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] gi|304345626|gb|EFM11461.1| tRNA pseudouridine synthase A [Paenibacillus curdlanolyticus YK9] Length = 248 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 M + Y+G+ Y G+Q Q +G++IQ +E AI +TGE + + G+GRTD+GVHA QV Sbjct: 3 RNIVMTVSYDGTTYSGFQSQPSGNTIQDIVETAIHSLTGEQLRIIGSGRTDAGVHARGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F A+N L D I IL + FHAR SA R++Y Y I R+ Sbjct: 63 FNFHTESRIPQERWALAMNTRL--PDDIVILEAWEAPEAFHARHSAKRKTYRYTIDRRKF 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + A+ P L MR A HL+G HDFT+F SI +RTI + G Sbjct: 121 PDVFSRMYAFHHPTPLQVGAMREALTHLIGEHDFTSFTSIQSTQPHHVRTIFEAWLEEDG 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L+ + V FL+ +R G++ VG+GK D+ L A DR GP A GL Sbjct: 181 PLLYLFVTGNGFLYNMVRIIAGTMMWVGEGKLAPADIPAMLAAVDRTCAGPTAMAHGLML 240 Query: 242 DSVEY 246 +VEY Sbjct: 241 WNVEY 245 >gi|52144819|ref|YP_082010.1| tRNA pseudouridine synthase A [Bacillus cereus E33L] gi|62901422|sp|Q63GF1|TRUA2_BACCZ RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|51978288|gb|AAU19838.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus E33L] Length = 245 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|160914527|ref|ZP_02076742.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] gi|158433685|gb|EDP11974.1| hypothetical protein EUBDOL_00533 [Eubacterium dolichum DSM 3991] Length = 252 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 107/246 (43%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ+Q N SIQ IE A+ + E V + +GRTD+ VHAL Q Sbjct: 1 MDRYKVTVCYDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + +A N+ L I IL + V FHARF A+R+ Y Y I Sbjct: 61 VFHFDAKKALSDEQWVRACNSLL--PKDIRILKVEKVSDSFHARFDAVRKRYDYYITNDV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LE A + + S + S I+TI +V Sbjct: 119 LNPFLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRLEVQQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I +FL +R L G + T + + L+A+D+ C A GLY Sbjct: 179 ANAVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKASANGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVRVDY 244 >gi|300903709|ref|ZP_07121624.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] gi|300404291|gb|EFJ87829.1| tRNA pseudouridine synthase A [Escherichia coli MS 84-1] Length = 270 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|296141060|ref|YP_003648303.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] gi|296029194|gb|ADG79964.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM 20162] Length = 273 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+ + GW RQ ++ G +E+AI V V + AGRTD+GVHA Q Sbjct: 1 MTRYRLDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D +P L + L L + + ++ +F ARFSA+RR Y YR+ Sbjct: 61 VAHVDTDL-ALPEGLVRRLARML--PQDVRVTAIAEAPAEFDARFSALRRHYEYRLTDAP 117 Query: 121 APLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + R + +D E M+ A+ L+G HDF F A++ Sbjct: 118 YGANPLRARDTAPWRRPVDVERMQAASDALLGLHDFAAFCRRREGATTVRELQRFAWRRD 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + V A +F + +RS VG++ VG+G+ + + L ++R +A GL Sbjct: 178 ADGVCTAEVSADAFCWSMVRSLVGAVAAVGEGRRSVEWVAGLLDERERSSAINVAAACGL 237 Query: 240 YFDSVEY 246 V+Y Sbjct: 238 TLVRVDY 244 >gi|260856362|ref|YP_003230253.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|257755011|dbj|BAI26513.1| pseudouridylate synthase I [Escherichia coli O26:H11 str. 11368] gi|323156469|gb|EFZ42624.1| tRNA pseudouridine synthase A [Escherichia coli EPECa14] Length = 270 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ + +NA L I++ + V FHARFSA R Y Y I + Sbjct: 71 HFETTAQRKDAAWTLGVNANL--PGDIAVRWVKAVPDDFHARFSATARRYRYIIYNHRLR 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVMRHGP 188 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTRAAATAKAEGLYLV 248 Query: 243 SVEY 246 +V+Y Sbjct: 249 AVDY 252 >gi|323463783|gb|ADX75936.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius ED99] Length = 267 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI + Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRIEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG GK ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGKRSADDVSNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|238685503|sp|A3M1T4|TRUA_ACIBT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193076245|gb|ABO10878.2| tRNA-pseudouridine synthase I [Acinetobacter baumannii ATCC 17978] Length = 265 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|145588955|ref|YP_001155552.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|226708658|sp|A4SWX4|TRUA_POLSQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145047361|gb|ABP33988.1| tRNA pseudouridine synthase A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 275 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-----IVVVHGAGRTDSGVH 56 +R + ++Y+GS Y GWQ Q + +IQ +EKA+ GE V AGRTD+GVH Sbjct: 1 MRIALGLQYDGSPYAGWQTQLHQPTIQDELEKALTAFIGEEAKAFPVHTITAGRTDTGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV HFD + +N +L S ++ V ++F ARFSA R+Y+Y + Sbjct: 61 ALGQVVHFDTNVGREDFSWVRGVNTFLPKSIVVNW--AKEVPEEFSARFSAYERTYIYAL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCEN----MRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + RA + D M+ +A+ L+G HDF++FRS CQ+ +P++TI Sbjct: 119 HAGPCRSPIVNARAGYLMLPPDQFLDVEAMKKSAECLIGEHDFSSFRSSECQSKTPVKTI 178 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 D+ S + R+ +FLH IR+ VG +G G+ S + + L A++R+ P Sbjct: 179 YAIDIISQEPWVYFRIRGNAFLHHMIRNIVGCFLQIGQGRQQSGWMAEVLTAKNRQIAAP 238 Query: 233 LAPPEGLYFDSVEY 246 +GLY ++Y Sbjct: 239 TFMADGLYLAKIKY 252 >gi|169634476|ref|YP_001708212.1| tRNA pseudouridine synthase A [Acinetobacter baumannii SDF] gi|260556213|ref|ZP_05828432.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] gi|238688125|sp|B0VLA5|TRUA_ACIBS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169153268|emb|CAP02373.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii] gi|260410268|gb|EEX03567.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 19606] Length = 265 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|298695476|gb|ADI98698.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus ED133] Length = 267 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|293402539|ref|ZP_06646674.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304053|gb|EFE45307.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 251 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY ++ Y+GS Y GWQ+Q N +SIQ IE+A+ + V + +GRTD+GVHA+ Q Sbjct: 1 MARYKAVVSYDGSSYGGWQKQLNTTSIQEVIEQALAKMHKHDVAIVASGRTDAGVHAIAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + KALN+ L I I ++ V + FHARF AI + Y Y I Sbjct: 61 VFHFDSEMKIQEKHWIKALNSLL--PKDIRIQSVKQVTEAFHARFDAIGKRYDYLISNDI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E A K A + + + ++TI +V Sbjct: 119 LNPFKENYMAKDAHKLDVAYMQECATVLIGTHDFTSFTSNKIDPRKPRVKTITRLEVLQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + FL +R +L G + T D++K L+A+D+ C A P+GLY Sbjct: 179 KDHVHMIFEGNGFLRYMVRMLSQTLIEAGKHRITKADIKKMLEAKDKHACRYKAVPQGLY 238 Query: 241 FDSVEYS 247 V+Y+ Sbjct: 239 LVRVDYA 245 >gi|282917564|ref|ZP_06325316.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283767311|ref|ZP_06340226.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] gi|282318526|gb|EFB48884.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus D139] gi|283461190|gb|EFC08274.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus H19] Length = 267 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEVSDVPKLLESKNRKNVPFTAAAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|169797325|ref|YP_001715118.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AYE] gi|213155861|ref|YP_002317906.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|215484762|ref|YP_002326997.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|301346428|ref|ZP_07227169.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB056] gi|301511754|ref|ZP_07236991.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB058] gi|301594287|ref|ZP_07239295.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB059] gi|332852976|ref|ZP_08434486.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332866410|ref|ZP_08436994.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] gi|226708639|sp|B7H0S9|TRUA_ACIB3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|226708640|sp|B7I4E8|TRUA_ACIB5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238688022|sp|B0V4L0|TRUA_ACIBY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169150252|emb|CAM88148.1| tRNA-pseudouridine synthase I [Acinetobacter baumannii AYE] gi|213055021|gb|ACJ39923.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB0057] gi|213988479|gb|ACJ58778.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB307-0294] gi|332728912|gb|EGJ60267.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013150] gi|332734636|gb|EGJ65742.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6013113] Length = 265 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTTAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|239500845|ref|ZP_04660155.1| tRNA pseudouridine synthase A [Acinetobacter baumannii AB900] Length = 265 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 129/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE+ + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIERVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRQERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|300717686|ref|YP_003742489.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] gi|299063522|emb|CAX60642.1| tRNA pseudouridylate synthase I [Erwinia billingiae Eb661] Length = 271 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 134/245 (54%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 11 HKLALGIEYDGSHYYGWQRQQEVRSVQEKLEKALSKVADHPVSVFCAGRTDAGVHGTGQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ +NA L D I++ + V FHARFSA R Y Y I R+ Sbjct: 71 VHFETTSLRKDAAWTLGVNANL--PDDIAVRWVKPVSDDFHARFSATARRYRYVIYNRRL 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ G LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V+ FG Sbjct: 129 RPAILHGGVTHFYHPLDVERMQRAGQSLLGENDFTSFRAVQCQSRTPWRRVFHLNVSRFG 188 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL VG G + + + L A+DR A EGLY Sbjct: 189 AYVIVDIKANAFVHHMVRNIVGSLMEVGCGNQQESWIAELLAAKDRTLAAATARAEGLYL 248 Query: 242 DSVEY 246 SV+Y Sbjct: 249 VSVDY 253 >gi|297567108|ref|YP_003686080.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] gi|296851557|gb|ADH64572.1| tRNA pseudouridine synthase A [Meiothermus silvanus DSM 9946] Length = 259 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 129/256 (50%), Gaps = 11/256 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + +E++G+ + G Q Q K ++Q ++E+A+ + G I V AGRTD+GVHAL Sbjct: 1 MRRIKLTVEFDGTHFAGLQTQAKGERTVQNTLEQALAQIPGAIPKVVAAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H+D + P + ALN L + L V +FHAR S R+Y YRI+ R Sbjct: 61 MPLHYDTLDPIPPEKIPLALNGLL--PPDLRALAAEEVAPEFHARKSCHWRAYRYRILNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIR------T 171 + P AL + AW IP+ L+ MR A +HLVG HDF F + R T Sbjct: 119 KTPSALLRHYAWWIPQQLNLVAMRHALEHLVGEHDFKAFAVKEKRPTVRRIYRAHLTVLT 178 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D I + V FL Q+RS VG+L VG GK S L + L+ R + G Sbjct: 179 PDIAQDAKNEREIHLEFVGSGFLRGQVRSMVGTLVEVGLGKRDSQSLGELLRTGTRSQAG 238 Query: 232 PLAPPEGLYFDSVEYS 247 P APP+GLYF Y+ Sbjct: 239 PTAPPQGLYFVGAGYA 254 >gi|113476553|ref|YP_722614.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] gi|110167601|gb|ABG52141.1| tRNA pseudouridine synthase A [Trichodesmium erythraeum IMS101] Length = 272 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 109/246 (44%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IEK I E V +HGAGRTD+GVHA QV Sbjct: 9 QRVALVIQYQGTHFHGWQRQPNQRTVQEEIEKTIASFINEPVTLHGAGRTDAGVHAAAQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ LN+ L + I I + +D +H+RF+AI R Y Y I T + Sbjct: 69 AHFDVSGPIPAHKWATILNSRLA--NDILIRGSARIDYAWHSRFTAIWRRYRYTIYTDKQ 126 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P W ++ D + ++ A L+G H F+ + Sbjct: 127 PNLFVMPFVWHYYQASLDPQLIQAALNPLIGHHHLAAFQRAGSCRPHSWVDVQEVMCERK 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I V A FL+ +R VG L VG + + Q R AP GL Sbjct: 187 GPFIYIEVQASGFLYGMMRLLVGLLIQVGTEELSLESFTDIWVNQRRDIVKHSAPASGLC 246 Query: 241 FDSVEY 246 V Y Sbjct: 247 LLRVGY 252 >gi|328957471|ref|YP_004374857.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] gi|328673795|gb|AEB29841.1| tRNA pseudouridine synthase A [Carnobacterium sp. 17-4] Length = 246 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M IEY+G Y GWQR + +IQG IE + +TG + G+GRTD+G HA Sbjct: 1 MRNIKMTIEYDGGRYLGWQRLSDSDKTIQGKIENILTAMTGTKTEIIGSGRTDAGAHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + L V ++FHAR++A + Y Y + Sbjct: 61 QVANFKTTSTMEFPAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ ++ P LD + M A LVG HDF F S+ S +RTID ++ Sbjct: 119 SIPSVFDRNFSYDFPGELDIDKMNEACNKLVGTHDFIGFSSLKKSKKSTVRTIDEIKIHK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ FL+ IR +G+L +G G + ++ ++ R + G P +GL Sbjct: 179 EGDLLHFTFKGEGFLYKMIRIIMGTLLEIGSGMADPSSIDAIFKSGIRSDAGMTVPSQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|42522098|ref|NP_967478.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] gi|51316639|sp|Q6MQH6|TRUA_BDEBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39574629|emb|CAE78471.1| pseudouridylate synthase I [Bdellovibrio bacteriovorus HD100] Length = 262 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + + Y+G+G+ GWQ+QK + S+ IE+A+ V E + + +GRTD+GVHAL Sbjct: 3 TKVRFTVAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHALN 62 Query: 60 QVAHFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV HF R+ P ALN++L S ++ FHA SA ++Y Y I Sbjct: 63 QVCHFSTHRKIDPNKKWDLCWALNSHLPPSIVAKKAWIA--PDDFHATLSATHKTYRYLI 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + P A A + +D E+++ ++++L+G DF +F+S+ +R I D Sbjct: 121 VNKPRPSAHLNRYADWVRLPIDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKAD 180 Query: 177 VNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 +++ + FL +R+ VG+ + + +++ + AQDR + GP AP Sbjct: 181 WEWRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAP 240 Query: 236 PEGLYFDSVEY 246 +GLY V Y Sbjct: 241 AQGLYLMKVYY 251 >gi|224531952|ref|ZP_03672584.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] gi|224511417|gb|EEF81823.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116] Length = 246 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q ++QG IEKA+ + + + +H +GRTD GVHA Q Sbjct: 1 MRKILAEIAYDGSIYHGFQIQPKKPTVQGEIEKALMKINKKKIKIHSSGRTDKGVHAKGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L + IL L V FH RF+A +R Y Y I+ Sbjct: 61 IITFDININIQLNNLKKALNAILLKNSI-KILKLKYVKNSFHPRFNAKKRKYRYCILNSN 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHFAKFKKR 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISIFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|167770549|ref|ZP_02442602.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] gi|167667144|gb|EDS11274.1| hypothetical protein ANACOL_01895 [Anaerotruncus colihominis DSM 17241] Length = 246 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 110/246 (44%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y G+Q Q+N ++ +++ A+ + GE + + G RTD+GVHA Sbjct: 1 MRHLLLTIRYRGTRYHGYQVQQNAVTVAQTVQDAVERIFGERLPIKGCSRTDAGVHANCF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + +A+N +L I++ V + FH R+ + YLYRI Sbjct: 61 ALTLRTASVMACDAVVRAMNVHL--PSDIAVTGCREVPEAFHPRYDCKGKRYLYRIYNGT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A LD M AAQ VG HDF F S +RT+ V Sbjct: 119 VRDPFSADLALFWKYPLDERRMDAAAQGFVGTHDFAAFCSSGSGVQDTVRTVTDASVTRH 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + V FL+ +R VG+L G +T D+ L+ +DR GP APP GLY Sbjct: 179 GDFVIYSVTGNGFLYNMVRIMVGTLLEAARGVYTPADVLHMLEGRDRSAAGPTAPPHGLY 238 Query: 241 FDSVEY 246 D+V Y Sbjct: 239 LDAVFY 244 >gi|86156809|ref|YP_463594.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85773320|gb|ABC80157.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 264 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 87/244 (35%), Positives = 124/244 (50%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++EY+G+ Y GWQ Q NG SIQ +E+A+ + V AGRTD+GVHA QVA Sbjct: 23 VKLVLEYDGTAYVGWQVQPNGPSIQAEVERALATLHKAPRRVTAAGRTDAGVHARGQVAS 82 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F R +NA L +++ S+ F AR SA + Y Y I Sbjct: 83 FREDRPLPVKAYVMGMNAVL--PPDVAVRAASLEPDGFDARRSARGKRYRYVIENLPTRA 140 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGN 182 L + +AW L+ N+R AA HLVGRHDF F++ C +R + +V G Sbjct: 141 PLTRLQAWQHFHPLELANVREAAAHLVGRHDFAAFQAADCACEHAVREVRRLEVLGEAGG 200 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 IE+ + A +F+ +R+ VG+L VG G+ + L DR E GP APP+GL+ + Sbjct: 201 RIEVVIEATAFVKHMVRNIVGTLVEVGRGRRAPGSMLALLARGDRTEAGPTAPPQGLFLE 260 Query: 243 SVEY 246 V Y Sbjct: 261 EVFY 264 >gi|300812341|ref|ZP_07092776.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496646|gb|EFK31733.1| tRNA pseudouridine synthase A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 262 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 85/251 (33%), Positives = 135/251 (53%), Gaps = 7/251 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHAL 58 M RY + + Y+G + G+Q Q +IQG++E+ + +T G+ V V G+GRTD+GVH++ Sbjct: 1 MTSRYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKRMTKGQEVRVFGSGRTDAGVHSV 60 Query: 59 RQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV HFD RE + KALN+ L + + IVDK FH+RFS + Y YR+ Sbjct: 61 GQVIHFDYPGREIPAANMIKALNSQL--PMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ P +D E M+ AA+ L+GRHDFT+F + Q +R + + +V Sbjct: 119 LDGFVNPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNV 178 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + N + + +A FL+ +R V +L +G+G+ DL++ + A++R E A Sbjct: 179 ALDEENNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQ 238 Query: 236 PEGLYFDSVEY 246 GLY V Y Sbjct: 239 SCGLYLYHVFY 249 >gi|116515069|ref|YP_802698.1| hypothetical protein BCc_129 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256923|gb|ABJ90605.1| pseudouridylate synthase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 269 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +++ +EY+GS Y GWQ+QK+ +IQ IE A+ + + V AGRTD GVHA+ Q+ Sbjct: 1 MKFVFGVEYDGSIYHGWQKQKSVLTIQECIEHALSKIANSKIEVICAGRTDKGVHAITQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + + LN+ L I++L L V FHARFSA+ RSY Y I R+ Sbjct: 61 VHFSSLIIRNEEVWFTGLNSLL--PKNITVLWLKKVSSNFHARFSALSRSYRYIIFNRKN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K + + LD M+ ++Q L+G HDF++F+S CQ+ S + I + Sbjct: 119 RSSFLKNYYFHVRNFLDIYKMKTSSQFLIGNHDFSSFKSSGCQSFSSRKNIFSLIIYRIN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I + A SFL+ +R+ VG L LVG K ++ LQ +D K+ P +GLYF Sbjct: 179 DFIIIDITANSFLYHMVRNIVGCLILVGLSKKKPEWVQYILQKKDIKKTYSTVPAQGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 LFASY 243 >gi|317492661|ref|ZP_07951088.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919411|gb|EFV40743.1| tRNA pseudouridine synthase A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 285 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 130/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y GWQRQ + S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 26 KIALGIEYDGSQYAGWQRQSDAPSVQECLEKALSKVACEPITVSCAGRTDAGVHATGQVV 85 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ +N + + I++ + V + FHARFSA R Y Y I + Sbjct: 86 HFETHVARKDAAWTMGVNTH--MPKDIAVRWVKSVSEDFHARFSATARRYRYVIYNHRYR 143 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ + LD E M A Q L+G +DFT+FR+ CQ+ +P R + H V G+ Sbjct: 144 QAVLQNGLTHFYHHLDAERMERAGQALLGENDFTSFRASQCQSRTPWRNVSHLKVTRLGD 203 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +F+H +R+ VGSL +G G + + + L A+DRK A GLY Sbjct: 204 YVIVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMAELLAAKDRKLAAATAKAAGLYLV 263 Query: 243 SVEY 246 SV+Y Sbjct: 264 SVDY 267 >gi|238022472|ref|ZP_04602898.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] gi|237867086|gb|EEP68128.1| hypothetical protein GCWU000324_02380 [Kingella oralis ATCC 51147] Length = 260 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + + YNGS +FG+Q+Q G +IQ ++E A+ + GE V + AGRTD+GVHA Sbjct: 1 MTRYALTLSYNGSAFFGFQKQAAGIPTIQTALEHALAQIAGEPVAITAAGRTDTGVHATA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + +NA+L D I++L+ V FHARF A R Y Y + + Sbjct: 61 QVVHFDSHATRPLTAWVRGVNAHL--PDGIAVLHAQAVAPDFHARFDACGRHYRYLLQSA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA LD M+ AA L+G HDF++FR+ CQA SP++T+ + Sbjct: 119 PVRSPLLVGRAGWTHYPLDMAAMQKAAALLLGEHDFSSFRAAECQAKSPVKTVYAIAFSG 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I+I A +FLH +R+ VG+L VG G+ + + AQ R P +GL Sbjct: 179 CPSFIKIDFHANAFLHHMVRNIVGALVYVGCGRLAVGEFAEMFAAQSRLTAPPTFMADGL 238 Query: 240 YFDSVEY 246 YF V+Y Sbjct: 239 YFTGVDY 245 >gi|257088005|ref|ZP_05582366.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] gi|256996035|gb|EEU83337.1| tRNA pseudouridine synthase [Enterococcus faecalis D6] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 5/236 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+G+ + G+Q+Q N ++Q IEK + + G V V G+GRTD+GVHA+ Sbjct: 1 MPRYKAIIAYDGTHFHGFQKQPNERTVQEEIEKTLARMNNGHSVTVFGSGRTDAGVHAMG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD +E + AL+ + + I++ ++ V + FHAR+ I ++Y +++ Sbjct: 61 QVIHFDYPQERPLEKMRFALDT--QTPEDIAVRSVERVSEDFHARYHVIEKTYQFKVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A P +D E ++ A L+G HDFT+F + +RTI V+ Sbjct: 119 KPRSPFRRFYASYFPYPIDLEKIQQALPDLLGTHDFTSFCASGSSVEDKVRTIHEASVHV 178 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 E FL+ IR VG+L +G+G+ T + + A+DR GP Sbjct: 179 NETGDELTFTFRGDGFLYKMIRILVGTLLKIGNGRLEPTAIPAIIAAKDRNLAGPT 234 >gi|319893169|ref|YP_004150044.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] gi|317162865|gb|ADV06408.1| tRNA pseudouridine synthase A [Staphylococcus pseudintermedius HKU10-03] Length = 267 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I YNG+ + G+Q Q G +IQG EK + + + V +H + RTD GVHA Q Sbjct: 1 MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVRIHPSSRTDRGVHAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFD P A+N+ L D I + ++S +D+ FH R+ + + Y Y I + Sbjct: 61 YFHFDTHLNITPERWQHAMNSAL--PDDIYVHDVSFIDRDFHCRYDCVGKRYRYSIYQAE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 PK+LD E M+ AAQ+ VG H+FTTF S + S RTI V Sbjct: 119 HRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQKTEVESKERTIYESRVEQT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I+ + FL+ +R + L VG G+ ++ D+ L QDR AP EGLY Sbjct: 179 ADGIDFVITGSGFLYNMVRVIMAYLLEVGKGRRSADDVPNLLAQQDRNLVPHTAPAEGLY 238 Query: 241 FDSVE 245 + + Sbjct: 239 LEKIY 243 >gi|196040200|ref|ZP_03107502.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] gi|196029055|gb|EDX67660.1| tRNA pseudouridine synthase A [Bacillus cereus NVH0597-99] Length = 245 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|296113461|ref|YP_003627399.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|295921155|gb|ADG61506.1| tRNA pseudouridine synthase A [Moraxella catarrhalis RH4] gi|326559732|gb|EGE10142.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 7169] gi|326568129|gb|EGE18213.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC7] gi|326568548|gb|EGE18620.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC1] Length = 268 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AH Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F E + N+ L D I++ + + FHARFSAI R Y Y + + Sbjct: 66 FVTHAERSAHSWLRGTNSLL--PDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ Sbjct: 124 AILHHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSY 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Sbjct: 184 LILDIQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 AYY 246 >gi|184156753|ref|YP_001845092.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ACICU] gi|332873165|ref|ZP_08441122.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] gi|238691030|sp|B2I367|TRUA_ACIBC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|183208347|gb|ACC55745.1| Pseudouridylate synthase [Acinetobacter baumannii ACICU] gi|322506645|gb|ADX02099.1| truA [Acinetobacter baumannii 1656-2] gi|323516520|gb|ADX90901.1| tRNA pseudouridine synthase A [Acinetobacter baumannii TCDC-AB0715] gi|332738677|gb|EGJ69547.1| tRNA pseudouridine synthase A [Acinetobacter baumannii 6014059] Length = 265 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 128/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE++G Y GWQ Q +S+Q +IE + + E + +HGAGRTD+GVHA Sbjct: 1 MQRYAVGIEFSGIQYRGWQTQQPGVASVQETIELVLSKIADEPITLHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 61 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQCYY 245 >gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] gi|42559754|sp|Q7TU07|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1] Length = 276 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 14/253 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVARCV 71 Query: 66 LV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + V L +A+N+ L + I + + ++FH A + Y Y + + Sbjct: 72 LPVWKADTVALQRAINSKL--PNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRDP 129 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 + +D M+ AA VGRHDF F+ + S +RTI Sbjct: 130 FANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVATG 189 Query: 182 --------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + FL+ +R+ +G++ VG GK + +++ L ++DRK GP Sbjct: 190 PTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGPT 249 Query: 234 APPEGLYFDSVEY 246 APP+GL+ V+Y Sbjct: 250 APPQGLFLCRVDY 262 >gi|126699393|ref|YP_001088290.1| tRNA pseudouridine synthase A [Clostridium difficile 630] gi|254975421|ref|ZP_05271893.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-66c26] gi|255092808|ref|ZP_05322286.1| tRNA pseudouridine synthase A [Clostridium difficile CIP 107932] gi|255100921|ref|ZP_05329898.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-63q42] gi|255306811|ref|ZP_05350982.1| tRNA pseudouridine synthase A [Clostridium difficile ATCC 43255] gi|255314550|ref|ZP_05356133.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-76w55] gi|255517225|ref|ZP_05384901.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-97b34] gi|255650331|ref|ZP_05397233.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-37x79] gi|260683444|ref|YP_003214729.1| tRNA pseudouridine synthase A [Clostridium difficile CD196] gi|260687040|ref|YP_003218173.1| tRNA pseudouridine synthase A [Clostridium difficile R20291] gi|306520297|ref|ZP_07406644.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-32g58] gi|115250830|emb|CAJ68654.1| Pseudouridylate synthase (tRNA pseudouridine synthase A) [Clostridium difficile] gi|260209607|emb|CBA63265.1| tRNA pseudouridine synthase 2 [Clostridium difficile CD196] gi|260213056|emb|CBE04418.1| tRNA pseudouridine synthase 2 [Clostridium difficile R20291] Length = 245 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA Sbjct: 1 MRNIKMIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL + I + + VD++FH+R++ ++Y+Y+I Sbjct: 61 QVVNFRTNCMDSLDKIQKYLYEYL--PEDIVVKTVEEVDERFHSRYNVKSKTYMYKIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ Sbjct: 119 KYHNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+IEI V FL+ +R VG+L VG + D++ L+++DR + AP +GL Sbjct: 179 DDNVIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESKDRCQSSDTAPAKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLWKVTY 245 >gi|89898653|ref|YP_515763.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] gi|123735904|sp|Q253C0|TRUA_CHLFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|89332025|dbj|BAE81618.1| tRNA pseudouridine synthase A [Chlamydophila felis Fe/C-56] Length = 268 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +++ Y G+ Y GWQRQ N SIQ IE A+ V G+ +VV +GRTDSGVHA Q Sbjct: 1 MKRVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D P + K LNA L I I ++ + D FHARFSAI + Y Y + Sbjct: 61 VAHFSQPDHPLFSQPQSIKKMLNAIL--PKDIVIRDVVLSDVNFHARFSAIAKEYRYSLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ A+ S+ + M+ A++L+G HDF +F + +S RT+ D+ Sbjct: 119 RSPKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ I FL+ +R+ VGSL + K+ +++ L + R++ P AP Sbjct: 179 IDNEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLHHVCY 247 >gi|269128483|ref|YP_003301853.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] gi|268313441|gb|ACY99815.1| tRNA pseudouridine synthase A [Thermomonospora curvata DSM 43183] Length = 288 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + I Y+G+ + GW RQ + ++QG IE+A+ V + AGRTD+GVHA Sbjct: 7 VRLRLDIGYDGTDFSGWARQPDRRTVQGVIEEALGRVLRLDPPPALTVAGRTDAGVHARG 66 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + + ++ + + + +++ + F ARFSA+ R Y+YR+ Sbjct: 67 QVAHVDVPERAYAAVSNRLVHRLAGLLPPDVRVWRIAVAPRGFDARFSALWRRYVYRVCD 126 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+A + + R P+ LD + M AA L+G HDF F A++ R + + Sbjct: 127 REAGVDPLRRREVLWHPRPLDLDRMNEAAARLLGEHDFAAFCRRREGATTIRRLLRYEWR 186 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L VVA +F H+ +R+ VG+L VGDG+ + L A R +AP Sbjct: 187 REEPALAAATVVADAFCHSMVRALVGALLAVGDGRREVDWPARVLAAGVRDSAVNVAPAH 246 Query: 238 GLYFDSVEY 246 GL + + Y Sbjct: 247 GLSLEEIGY 255 >gi|254521233|ref|ZP_05133288.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] gi|219718824|gb|EED37349.1| tRNA pseudouridine synthase A [Stenotrophomonas sp. SKA14] Length = 256 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EY+GS + GWQ + G S+Q S+E A+ V + V AGRTD+GVH Q Sbjct: 1 MRYALGVEYDGSDFRGWQNLGEGGPSVQASLELALSSVADAPLQVVCAGRTDAGVHGQCQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P L S + V FHARFSA R Y YR++ R+ Sbjct: 61 VVHFDTDVVRDPRAWMLGTTTRLPRSIAVRWCV--PVADDFHARFSARARRYRYRLLNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL + ++LD M A Q L+G +DF+ FRS+ CQA R + V+ Sbjct: 119 VRPALGRQTLSWERRTLDEALMHAAGQALLGENDFSAFRSVQCQALHARRELQSLQVSRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +IE+ V +FLH +R+ VGSL LVG G+ + + L +DR GP APP+GL Sbjct: 179 GEVIEVAVQGNAFLHHMVRNIVGSLILVGSGEKPVEWIAELLAGRDRTVAGPTAPPQGLV 238 Query: 241 FDSVEY 246 F Y Sbjct: 239 FLGPLY 244 >gi|325105198|ref|YP_004274852.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] gi|324974046|gb|ADY53030.1| tRNA pseudouridine synthase A [Pedobacter saltans DSM 12145] Length = 258 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y+G Y GWQ Q N ++Q ++ A+ GE + G GRTD+GVHA + Sbjct: 5 QRFFIELSYHGLQYHGWQYQPNAITVQEKLDNALSTFFGEKIESLGCGRTDTGVHATQFY 64 Query: 62 AHFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD +E+ + +N+ L I++ +L V + HARF AIRRSY Y I Sbjct: 65 AHFDTEKEFSENSEIRFLKGINSLL--PYDIAVKHLHQVHEDAHARFDAIRRSYEYHIHF 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P P ++D N+ A +++ DF F + + + + Sbjct: 123 NKNPFKTYTSWLHKEPLNVDAMNI--GASYILDYEDFGAFCKANAGNFTNNCIVSRAEWE 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + A FL +R+ VG+L +G GK+ ++ ++++ R G P G Sbjct: 181 VKNDGIIFHITANRFLRNMVRAIVGTLTDIGKGKYAPEHIKHIIESKKRSSAGASVPACG 240 Query: 239 LYFDSVEY 246 L V Y Sbjct: 241 LLLTEVCY 248 >gi|326790769|ref|YP_004308590.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326541533|gb|ADZ83392.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 246 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y + I Y+GS Y G+Q+Q +IQG +E + E + + +GRTD+GVH+ Sbjct: 1 MTNYKLTIAYDGSKYNGFQKQSKHPEKTIQGRLENVLTQCFEEDIQIIASGRTDAGVHSK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV +F P + L+ YL I+IL LSI +FHAR++ +R+ Y Y I Sbjct: 61 GQVCNFHAEHYLEPTTVLNYLSNYL--PQDIAILELSIASPRFHARYNVLRKCYTYTIDN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A+ + LD M+ AA +L+G HDF F S+ + S R + + D+ Sbjct: 119 GLFANPFTLKYAYHLASPLDISRMQAAANYLLGTHDFKAFTSLKSKTKSTTRHLFNIDIT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G++I++ FL +R G+L VG G+ + ++ L Q R E G AP G Sbjct: 179 QEGSMIKLTYEGNGFLQHMVRILTGTLIEVGLGERSPEEMLVLLNNQIRSEAGFTAPAHG 238 Query: 239 LYFDSVEY 246 L V+Y Sbjct: 239 LCMQRVDY 246 >gi|229171272|ref|ZP_04298862.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] gi|228612229|gb|EEK69461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MM3] Length = 250 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN +L + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQHL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|21283867|ref|NP_646955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49487001|ref|YP_044222.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MSSA476] gi|297209968|ref|ZP_06926364.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910980|ref|ZP_07128430.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] gi|30913392|sp|Q8NVB7|TRUA_STAAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|56749699|sp|Q6G7A2|TRUA_STAAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21205309|dbj|BAB96003.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus MW2] gi|49245444|emb|CAG43921.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp. aureus MSSA476] gi|296885641|gb|EFH24578.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887960|gb|EFK83155.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus TCH70] Length = 267 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+NG ++Q EK + + V +H + RTD GVHA++Q Sbjct: 1 MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD FH R+ + + Y Y++ Q Sbjct: 61 FHFDTELNIPMSQWQYAMNRTL--PDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G IP++LD + M AAQ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V FL+ +R V L VG G+ +D+ K L++++RK A EGLY Sbjct: 179 DGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|225849320|ref|YP_002729484.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] gi|225643913|gb|ACN98963.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium azorense Az-Fu1] Length = 244 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 88/244 (36%), Positives = 120/244 (49%), Gaps = 5/244 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQKN IQ IE + + E + + G+GRTD+GVHAL QVA Sbjct: 6 NYKLTISYIGTRYSGWQRQKNAVGIQQIIEDLLEKLFKEKITLIGSGRTDAGVHALNQVA 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F P + LNA L IS+ + VD F+ARFSA ++YLYRI T+ P Sbjct: 66 NFKTYSYKDPSTIYSYLNAKL--PRDISVKKVEEVDLNFNARFSAKGKTYLYRIYTK--P 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 GR W K LD M + L D T+ + + + G Sbjct: 122 DPFLYGRGWFFDKDLDIVKMLQGIEILKKYKDLTSLAKEGNYIRKEV-DLREIKLYYDGK 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I+I + A FL +R VG L +G G + + E ++A+D + LAPPEGLY Sbjct: 181 IIDIEITASHFLRNLVRRIVGHLVAIGRGSLSLQEFEDIIKAKDSSKGKFLAPPEGLYLK 240 Query: 243 SVEY 246 V Y Sbjct: 241 EVYY 244 >gi|326559413|gb|EGE09838.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 46P47B1] gi|326564997|gb|EGE15197.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 103P14B1] gi|326566051|gb|EGE16211.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 12P80B1] gi|326572448|gb|EGE22440.1| tRNA pseudouridine synthase A [Moraxella catarrhalis BC8] gi|326572505|gb|EGE22494.1| tRNA pseudouridine synthase A [Moraxella catarrhalis CO72] gi|326574101|gb|EGE24049.1| tRNA pseudouridine synthase A [Moraxella catarrhalis 101P30B1] gi|326576065|gb|EGE25984.1| tRNA pseudouridine synthase A [Moraxella catarrhalis O35E] Length = 268 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q IEKA+ + E + + AGRTD+GVHA +AH Sbjct: 6 LAVGIEFIGTRYRGWQRQEEVIGVQAVIEKALSTIANESIELIAAGRTDAGVHAGNMIAH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F E + N+ L D I++ + + FHARFSAI R Y Y + + Sbjct: 66 FVTHAERSAHSWLRGTNSLL--PDDIALRWVQPMPDDFHARFSAIARRYRYITLNQPYRP 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + + LD + M IA+Q +VG HDF++FR+ CQ++ P+RT+ H ++ G+ Sbjct: 124 AILRHQVTHEYTKLDIDAMIIASQFIVGTHDFSSFRAAACQSNQPVRTVTHANLFQHGSY 183 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A FLH +R+ +G+L VG G+ + + + A++R P A +GLYF + Sbjct: 184 LILDIQADGFLHHMVRNIMGALFAVGRGEISPETFYELMLAKNRTLAPPTASADGLYFIN 243 Query: 244 VEY 246 Y Sbjct: 244 AYY 246 >gi|15836112|ref|NP_300636.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae J138] gi|16752458|ref|NP_444720.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|12644497|sp|Q9Z7X4|TRUA_CHLPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|7189101|gb|AAF38045.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae AR39] gi|8978952|dbj|BAA98787.1| pseudouridylate synthase I [Chlamydophila pneumoniae J138] Length = 267 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D + KALNA L I I ++++ D FHAR+ I + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAIL--PKDIVIRDVALFDDNFHARYLTIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|146337887|ref|YP_001202935.1| tRNA pseudouridine synthase A [Bradyrhizobium sp. ORS278] gi|166228681|sp|A4YLC1|TRUA_BRASO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146190693|emb|CAL74697.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Bradyrhizobium sp. ORS278] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 123/246 (50%), Positives = 166/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q+ S+QG +E A+ G VHG+GRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQETLPSVQGVLEAAVQATCGVPTRVHGSGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ +E+ P L ALNA+L+ + +++L+ IV F ARFSA +R Y YRI+ R+ Sbjct: 61 VAHCDIDKEFRPDKLRDALNAHLR-PNPVAVLDAQIVPDTFEARFSARKRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE GR W +P+ LD + M +AAQ L+G+HDFTTFR CQA SP +T+D DV Sbjct: 120 SNLALEVGRVWRVPQRLDSDAMHVAAQRLIGKHDFTTFRDTECQAKSPEKTLDQLDVVRD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARS+LH+Q+RS VGSL VG G+W++ DL AL A+ R CG +APPEGLY Sbjct: 180 GDAVTIITSARSYLHSQVRSMVGSLVWVGQGRWSADDLAAALAARRRAACGVVAPPEGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVQVDY 245 >gi|15618490|ref|NP_224776.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae CWL029] gi|33241935|ref|NP_876876.1| tRNA pseudouridine synthase A [Chlamydophila pneumoniae TW-183] gi|4376873|gb|AAD18719.1| Pseudouridylate Synthase I [Chlamydophila pneumoniae CWL029] gi|33236445|gb|AAP98533.1| pseudouridylate synthase I [Chlamydophila pneumoniae TW-183] Length = 267 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G+ Y GWQ+Q N SIQ IE ++ +T + +GRTD+GVHA Q Sbjct: 1 MTKVALLIAYQGTAYSGWQQQPNDLSIQEVIESSLKKITKTRTPLIASGRTDAGVHAYGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D + KALNA L I I ++++ D FHAR+ AI + Y Y + Sbjct: 61 VAHFRAPDHPLFANANLTKKALNAIL--PKDIVIRDVALFDDNFHARYLAIAKEYRYSLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ + E M+ A L+G HDF +F + +S +RTI D+ Sbjct: 119 RLAKPLPWQRHFCYTPRHPFSTELMQEGANLLIGTHDFASFANHGRDYNSTVRTIYTLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ + I FL+ +R+ VG+L VG G + L L+ ++R+E AP Sbjct: 179 VDKGDSLSIICRGNGFLYKMVRNLVGALLDVGKGAYPPEHLLDILEQKNRREGPSAAPAY 238 Query: 238 GLYFDSVEYS 247 GL V YS Sbjct: 239 GLSLHHVCYS 248 >gi|282877805|ref|ZP_06286618.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] gi|281300121|gb|EFA92477.1| tRNA pseudouridine synthase A [Prevotella buccalis ATCC 35310] Length = 243 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + Y+G+ Y GWQ Q NG+S+Q +++A+ ++ E +V GAGRTD+GVHA + Sbjct: 1 MHRYFICFRYDGTAYHGWQVQPNGNSVQAELQQAMSVILREPIVTVGAGRTDAGVHARKM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E LN L IS+LN+ + + HARFSA R+Y Y I Sbjct: 61 FAHFDFHAEIDTKQFTYKLNRLL--PRDISVLNVFSLSEDMHARFSAKWRTYHYYIH--L 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + +P LD M AA HL+ DF F + + + + + Sbjct: 117 SKNPFLRHYSCQLPYQLDFSLMNEAASHLLKVEDFGAFCKSNTDVKTTLCHVVQAEWVEV 176 Query: 181 GNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + A FL +R+ VG+L VG + T + + +++ +R + G P L Sbjct: 177 GEDAWYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLDEFDAVVRSGNRTKAGESMPANAL 236 Query: 240 YFDSVEY 246 + + VEY Sbjct: 237 FLEDVEY 243 >gi|291288851|ref|YP_003505667.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] gi|290886011|gb|ADD69711.1| tRNA pseudouridine synthase A [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 127/242 (52%), Gaps = 2/242 (0%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 +I+EY G+ + GWQ Q NG ++Q + KA+ + V V G+GRTDSGVHAL QVA+F Sbjct: 6 KLIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQVANF 65 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 R P + LN+ L + ISI ++ V + FHA+ +A+ ++YLYRI + A Sbjct: 66 RTERYIPPENVHMGLNSML--PEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVRSA 123 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + GR W + L+ + M ++ G HDFT+F + +R I++ +I Sbjct: 124 MLAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDKVI 183 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + FLH +R G++ + +++A++ +DR + GP A GLY V Sbjct: 184 CIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLKKV 243 Query: 245 EY 246 Y Sbjct: 244 YY 245 >gi|218440649|ref|YP_002378978.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] gi|218173377|gb|ACK72110.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7424] Length = 306 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IE+AI +V G+ V +HGAGRTD+GVHA QV Sbjct: 11 QRVALVIQYLGTHFHGWQRQPNRRTVQEEIERAIAVVIGQPVTLHGAGRTDTGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + P LN+ L D I + + V ++HARFSA R Y Y I T + Sbjct: 71 AHFDQISPIPPGRWASILNSRL--PDDIIVRASNRVCDRWHARFSACWRRYRYTIYTDKQ 128 Query: 122 PL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ + L+ M+ A L+G+H F + + I Sbjct: 129 PNLFIKPFSWHYYHQPLEESLMQSALDPLLGKHHLAAFHRANSARTHSWVEIQAAHCYRI 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A FL+ +R VG L VG+ + + D + Q Q R+E AP +GL Sbjct: 189 GPFVHIEIQANGFLYGMVRLLVGMLIEVGNKQRSIEDFTRIWQNQRREEVKYAAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|196034640|ref|ZP_03102048.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196045298|ref|ZP_03112530.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218901631|ref|YP_002449465.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|300119051|ref|ZP_07056762.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|301052143|ref|YP_003790354.1| tRNA pseudouridine synthase A [Bacillus anthracis CI] gi|195992683|gb|EDX56643.1| tRNA pseudouridine synthase A [Bacillus cereus W] gi|196023882|gb|EDX62557.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB108] gi|218540034|gb|ACK92432.1| tRNA pseudouridine synthase A [Bacillus cereus AH820] gi|298723667|gb|EFI64398.1| tRNA pseudouridine synthase A [Bacillus cereus SJ1] gi|300374312|gb|ADK03216.1| tRNA pseudouridine synthase A [Bacillus cereus biovar anthracis str. CI] Length = 245 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|229165426|ref|ZP_04293210.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] gi|228618024|gb|EEK75065.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621] Length = 268 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|332970287|gb|EGK09279.1| tRNA pseudouridine synthase A [Kingella kingae ATCC 23330] Length = 265 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 131/252 (51%), Gaps = 8/252 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ R+ + + Y+GS +FGWQ+Q +G ++Q ++E A+ + GE + AGRTD+G Sbjct: 1 MMQPQTQRFALTVSYDGSQFFGWQKQADGVVTVQAALEHALSCIAGEPIATIAAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+ HFD + +NA+L + FHARF A R Y Y Sbjct: 61 VHATGQIVHFDTQAHRPLSAWVRGVNAHLPDGVAVLAAQAVEPA--FHARFDATGRRYRY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + L RA +L+ + M+ A L+G HDF++FR+ CQA SPI+T+ Sbjct: 119 LLESAPVRSPLLYRRAGWTHYALNTDPMQAAMNLLLGEHDFSSFRAAQCQAKSPIKTMYA 178 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + G LI++ A +FLH +R+ VG+L VG G+ + D L + R P Sbjct: 179 AQLQRAGCLIKLDFHANAFLHHMVRNLVGALVYVGCGRLSVADFADLLAQKSRLTAPPTF 238 Query: 235 PPEGLYFDSVEY 246 P+GLYF V+Y Sbjct: 239 MPDGLYFVGVDY 250 >gi|229028278|ref|ZP_04184414.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] gi|228733042|gb|EEL83888.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1271] Length = 250 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + IS+ ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISVTDVEEVPDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPYILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|299138466|ref|ZP_07031645.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] gi|298599712|gb|EFI55871.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX8] Length = 271 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 94/270 (34%), Positives = 134/270 (49%), Gaps = 26/270 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + + Y+G+ + GWQ Q ++QGS+ A+ VTGE V+ G+GRTDSGVHAL Q Sbjct: 1 MNHWKLTLSYDGTLFHGWQVQPELPTVQGSLALALKYVTGESVLPQGSGRTDSGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII--- 117 V F L P L +ALN L +I IL +VD+ FHAR SA R++Y YRI Sbjct: 61 VTSFALETSIPPANLQRALNRAL--PPSIRILTAELVDESFHARHSARRKTYEYRIFERR 118 Query: 118 -----TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--------- 163 + + AW L E M+ A+++L G HDFT+F + Sbjct: 119 TAASPSERICSPFLAPYAWDCRWQLAIEPMQEASKYLCGTHDFTSFAASDPERGLREEES 178 Query: 164 -------QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +P++T+ L+ RV FLH +R+ VG+L VG G Sbjct: 179 DDANGKAHGPNPVKTLLQAGWAHEDGLLVYRVTGSGFLHHMVRNIVGTLADVGRGSLAVD 238 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ + L A++R GP AP GL+ SVEY Sbjct: 239 EIPRILAARNRTAAGPTAPACGLFLHSVEY 268 >gi|89893262|ref|YP_516749.1| hypothetical protein DSY0516 [Desulfitobacterium hafniense Y51] gi|89332710|dbj|BAE82305.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 271 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAAG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 65 QVVNFRTGARIPVDKIPKAFNSLL--PRDIRILAAQEAAENFHARFSAKWKRYDYRIDNH 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 123 PVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAE 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 TLSYVHY 249 >gi|162147913|ref|YP_001602374.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209542530|ref|YP_002274759.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|161786490|emb|CAP56072.1| putative tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] gi|209530207|gb|ACI50144.1| tRNA pseudouridine synthase A [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 114/248 (45%), Positives = 154/248 (62%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 R+ + IEY+G + GWQRQ G S+Q +E+A + +G +V AGRTD+GVHA Q Sbjct: 7 QRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHATGQ 66 Query: 61 VAHFDLVREW--VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D + + ALN ++K +++L VD ++ ARFSAIRRSY YRI+ Sbjct: 67 AAHLDFPGDVRLNDSTVRDALNFHMK-PYPVAVLRACPVDTEWSARFSAIRRSYRYRILN 125 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L+ GR WL+ ++LD M AA+ L+GRHDFT+FR+ CQA SP+RT+D V Sbjct: 126 RRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLGVV 185 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I I ARSFLH Q+R+ VG+LKLVG+G W + AL A DR+ GP APP+G Sbjct: 186 RQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDG 245 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 246 LYLTGVGY 253 >gi|146282143|ref|YP_001172296.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri A1501] gi|145570348|gb|ABP79454.1| tRNA-pseudouridine synthase I [Pseudomonas stutzeri A1501] Length = 286 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 127/246 (51%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 19 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + F ARFSA+ R Y Y I Q Sbjct: 79 VVHFDTPVERSMHAWVMGANMNL--PPDISVTWAKKMPPHFDARFSAMARRYRYVIYNDQ 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H ++ F Sbjct: 137 IRPAHMAEEVTWNHRPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHHLELLQF 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A P GLY Sbjct: 197 GRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTAHPYGLY 256 Query: 241 FDSVEY 246 V+Y Sbjct: 257 LVEVDY 262 >gi|150392315|ref|YP_001322364.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149952177|gb|ABR50705.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 246 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 3/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+EY+G+ Y GWQRQ +IQG +E I + G+ + G+GRTD+G HA Sbjct: 1 MRNIRMIVEYDGTKYRGWQRQTATDMTIQGKLEHVISEMVGKKTEIVGSGRTDAGAHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + + +N YL I + L +FH+R++ + Y+YRI Sbjct: 61 QVANFHTKSTLSIKEMYQYINQYL--PQDIVVKELKEAGPRFHSRYNVKGKKYVYRIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ +P++L+ E M+ AA LVG +DF F S+ + +RTI+ + Sbjct: 119 STASVFHRKHSYHVPQALNLELMQEAAAKLVGTYDFLPFSSVKKSEKTTVRTIESITIEK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +EI +V FL+ +R G+L +G K T +++ R+ G P +GL Sbjct: 179 KDAFVEITIVGDGFLYNMVRIITGTLIEIGSKKKKPTYIDEIFSVGKRQNAGETVPSQGL 238 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 239 FLIEVYYN 246 >gi|260062032|ref|YP_003195112.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88783594|gb|EAR14765.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 253 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 +R+ + I Y G+ Y GWQ+Q N +IQ +E + + G + + GAGRTD+GVHA + Sbjct: 1 MRFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQL 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + + LNA+L I++ + V HARF A R+Y Y + + Sbjct: 61 FAHFDRDAALPSGFVHR-LNAFL--PADIAVKGVYEVAPNAHARFDATGRTYEYHL--VR 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +G A+ LD M AA ++G +F F + + Sbjct: 116 EKDPFREGLAYQFQGELDFGAMNRAAASMLGYGNFKAFSRSKSDVKTYNCDLREARWEEG 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +R+ VG+L VG G+ + ++ +++QDR E G P +GLY Sbjct: 176 DGVWVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAKGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LTRITY 241 >gi|300870453|ref|YP_003785324.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli 95/1000] gi|300688152|gb|ADK30823.1| tRNA-pseudouridine synthase, TrmA [Brachyspira pilosicoli 95/1000] Length = 247 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+Y+G+ +FGWQ Q N ++QG I KA+ + + ++G GRTD+GVHAL Q Sbjct: 1 MTNIKITIQYDGTDFFGWQIQPNLRTVQGEIYKAVQKIYSKKSTIYGCGRTDAGVHALGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA+F + + + +ALN+ L I I+ +VD F+AR SA R Y+Y + Sbjct: 61 VANFRVEKMLVPIERVTRALNSAL--PKDIRIIKSEVVDDSFNARASATFREYIYVVQNS 118 Query: 120 QAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + ++ + + A++LVG H+FT+F S + S R I+ Sbjct: 119 DISVPFYERYSWFYRKNIINEKLINEYAKYLVGEHNFTSFCSTEDENDSKFRYIERVRAI 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + +FLH +R VG+L +E+ L+ +DR AP G Sbjct: 179 RKKDTIYFIIRGNAFLHNMVRIIVGTLVEGQRKNMPVNFIEEILKKEDRTLAFVTAPAHG 238 Query: 239 LYFDSVEY 246 LYF + Sbjct: 239 LYFRRAFF 246 >gi|313205364|ref|YP_004044021.1| tRNA pseudouridine synthase a [Paludibacter propionicigenes WB4] gi|312444680|gb|ADQ81036.1| tRNA pseudouridine synthase A [Paludibacter propionicigenes WB4] Length = 251 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 117/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y G+ Y GWQ Q NG S+Q + +A+ + + + GAGRTD+GVHA V Sbjct: 3 RRYFIYFSYKGTAYHGWQMQPNGISVQEVLTRALCTILRTNLEIVGAGRTDAGVHAKLMV 62 Query: 62 AHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD A LN++L ISI ++ V HARF AI R Y Y I T + Sbjct: 63 AHFDFETALPSEFDLVAKLNSFL--PGDISIYKIAEVKPDAHARFDAISRRYEYHIFTNK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A LD E M +AA+ L DFT+F +H + I H + Sbjct: 121 N--VFKNELAVRESDKLDFEAMNLAAKTLTKFKDFTSFSKLHTDVKTNNCQIHHAEWTQQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + A FL +R+ VG+L VG K + + + A++R + G P GLY Sbjct: 179 GDEWVFTIEADRFLRNMVRAIVGTLFEVGRRKMNTDEFATVIAAKNRCKAGVSVPAHGLY 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVDIKY 244 >gi|330502915|ref|YP_004379784.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] gi|328917201|gb|AEB58032.1| tRNA pseudouridine synthase A [Pseudomonas mendocina NK-01] Length = 287 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 122/246 (49%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ +SIQG +E A+ V G V +H AGRTD+ VH+ Q Sbjct: 19 RVALGLEYKGARYRGFQRQGGKVASIQGCLEDALSKVAGGAPVTIHCAGRTDASVHSSGQ 78 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ ++ FHARFSA+ R Y Y I Sbjct: 79 VVHFDTTVERSLHAWVMGANMNL--PSDISVTWAKVMPAHFHARFSAMARRYRYVIYNDP 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD MR AA LVG HDF+ FR+ CQA SPI+T+ H + Sbjct: 137 IRPAHMAEEVTWNHRPLDVARMREAALALVGTHDFSAFRATRCQAKSPIKTVHHLQLIEH 196 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH +R+ G L +G G+ + L+ DR G A P GLY Sbjct: 197 GRFIVLDIRANAFLHHMVRNIAGVLMTIGAGERPPEWAREVLERGDRHSGGVTAHPYGLY 256 Query: 241 FDSVEY 246 V+Y Sbjct: 257 LVQVDY 262 >gi|46445962|ref|YP_007327.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316632|sp|Q6MEE7|TRUA1_PARUW RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA pseudouridylate synthase I 1; AltName: Full=tRNA-uridine isomerase I 1 gi|46399603|emb|CAF23052.1| putative tRNA pseudouridylate synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 256 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQ Q N SSIQ I++A+ ++ E VV+ G+GRTD+GVHA Sbjct: 1 MHCYKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAHF L +LN L I I + V +FH+++SAIR+ Y Y + Sbjct: 61 QVAHFHFQDYIDLSRLHVSLNGLL--PRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFD 176 + ++ +W + +D ++ AA G HDFT+F A +P+RT+ D Sbjct: 119 KVMDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + FL+ +R+ VG+L V K ++ + A++R++ APP Sbjct: 179 IKPNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPP 238 Query: 237 EGLYFDSVEY 246 EGL+ V Y Sbjct: 239 EGLFLIQVFY 248 >gi|325107879|ref|YP_004268947.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] gi|324968147|gb|ADY58925.1| tRNA pseudouridine synthase A [Planctomyces brasiliensis DSM 5305] Length = 278 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 129/264 (48%), Gaps = 21/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+GSGY+GWQ Q + +IQ +E+AI +TG V GAGRTD+GVHA+ QV Sbjct: 4 RNIKLTLSYDGSGYYGWQVQPDRPTIQEHLERAIGNITGTPSRVAGAGRTDTGVHAIGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F AL + L D I I FHA +++ + Y Y ++ + Sbjct: 64 ACFRTESNIPAERFRPALQSQL--PDDIVIWKSEEAADDFHAGYASRWKQYRYLVLNEEI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + A I LD + M AA LVG+HDF +F S ++ +RT+ H VN Sbjct: 122 PRPQMRRYATRIGTRLDLDAMNEAASALVGKHDFRSFESQFPNKATSVRTVLHCRVNEAE 181 Query: 182 NLIEIR-------------------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + A FL+ +R+ +G+L +G G W ++ ++ L Sbjct: 182 TCPLWQPGLGGQRFGQAVGRCVYLDIAADGFLYNMVRAIMGTLLKIGIGSWPASAGKEVL 241 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 +A DR+ GP APPEGLY VEY Sbjct: 242 EAMDRRVAGPTAPPEGLYLMHVEY 265 >gi|291551097|emb|CBL27359.1| pseudouridylate synthase I [Ruminococcus torques L2-14] Length = 244 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ N +++QG++E+ I V G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTAYQGWQRQANTENTLQGTLERTISSVAGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + +N+ L + I IL+ +V FHAR SA+ + Y+Y++ Sbjct: 61 QTATVVLSGRVEDGFFTEKINSRL--PEDIRILDAELVRNGFHARKSAVGKKYIYQLDLA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD + MR AAQ L+G ++F + + S RTI + Sbjct: 119 EKPDVFTRRYTYHFPQRLDLDAMRKAAQLLIGTYEFAGYTDKKDE-KSTKRTIYAIMICG 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I+ FL+ +R G+L VG G + +++ L+++DR + G LAP GL Sbjct: 178 QGSKVSIQYEGTGFLYHMVRILTGTLLEVGTGARSIESVKEPLKSKDRSQAGFLAPARGL 237 Query: 240 YFDSVEY 246 + D V Y Sbjct: 238 FLDEVYY 244 >gi|189183835|ref|YP_001937620.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Ikeda] gi|238692245|sp|B3CSN9|TRUA_ORITI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189180606|dbj|BAG40386.1| pseudouridylate synthase I [Orientia tsutsugamushi str. Ikeda] Length = 283 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 110/284 (38%), Positives = 148/284 (52%), Gaps = 39/284 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHFDL-------------------------------------VREWVPVILCKALNAYL 83 V HFDL + L A+N YL Sbjct: 61 VVHFDLISPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKMLPCRYNAYKLMSAVN-YL 119 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 120 LKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRAVPSVIEQNRTWWIKTPLNVIDMI 179 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSFV 202 A+QHL+G+HDFT+FRS CQA SP++T+ + + I+I A SFLH +R+ V Sbjct: 180 DASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNIV 239 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 240 GTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 283 >gi|225164227|ref|ZP_03726501.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] gi|224801166|gb|EEG19488.1| tRNA-pseudouridine synthase I [Opitutaceae bacterium TAV2] Length = 354 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 114/250 (45%), Gaps = 6/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R+ + Y+G+ + GWQ Q +G++IQ +E+ + + GE V +HG+GRTD+GVHA QV Sbjct: 100 RWKCTVAYDGTHFSGWQSQPDGNAIQDHLERRLARMLGESVRIHGSGRTDAGVHARAQVF 159 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-----FHARFSAIRRSYLYRII 117 HFD P L A + + + D + FHARF A + Y Y + Sbjct: 160 HFDAAWRHGPERLLAAFRSGGGEGGGGVPSGIQVTDARIVSAAFHARFDATGKRYTYDLH 219 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFD 176 + W IP+ LD MR AA LV + + +R + D Sbjct: 220 HGGFADPFTQDYCWSIPQKLDVVAMRAAAALLVGRHDFCAFSALSGEERETTVRHLTQLD 279 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +++ G I I A FL+ +R VG+L G GK T D+ + L R AP Sbjct: 280 ISARGARIRITARADGFLYRMVRRLVGALVHAGLGKLTPGDIAQILSEARRTPRIETAPA 339 Query: 237 EGLYFDSVEY 246 GL+ D V Y Sbjct: 340 HGLFLDRVFY 349 >gi|154502979|ref|ZP_02040039.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] gi|153796518|gb|EDN78938.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149] Length = 244 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ N +IQG +E+A G V V G+GRTD GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQSNTDKTIQGLLEQAASEAAGYPVEVQGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L I ++ + +V FHAR SA+ + Y Y I R Sbjct: 61 QTASVILRGKVQESEFLQNMNRLL--PLDIRVIEMELVKNGFHARLSAVGKCYEYWIDMR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + PK L+ E M+ AA L+GR+DF F + S IRTI V Sbjct: 119 EKPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDFAAFTDKKEE-KSTIRTIYAIIVEV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I F++ +R G+L VGDG+ T ++ AL +DR + G LAP GL Sbjct: 178 QGDKLRIEYRGSGFMYHMVRILTGTLLEVGDGRRTPESVKAALAGRDRADAGFLAPARGL 237 Query: 240 YFDSVEY 246 V Y Sbjct: 238 TLKEVYY 244 >gi|148284891|ref|YP_001248981.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] gi|166228742|sp|A5CET3|TRUA_ORITB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|146740330|emb|CAM80738.1| tRNA pseudouridine synthase A [Orientia tsutsugamushi str. Boryong] Length = 284 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 110/285 (38%), Positives = 148/285 (51%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY I+EY+G+ + GWQRQ+NG SIQ +E I T + V + AGRTD+GVHAL Q Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 61 VAHFDL--------------------------------------VREWVPVILCKALNAY 82 V HFDL + L A+N Y Sbjct: 61 VVHFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVN-Y 119 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 L I + + I QFHARFSA R Y YRII R P +E+ R W I L+ +M Sbjct: 120 LLKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRTVPSVIEQNRTWWIKPPLNVIDM 179 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNLIEIRVVARSFLHTQIRSF 201 A+QHL+G+HDFT+FRS CQA SP++T+ + + I+I A SFLH +R+ Sbjct: 180 IDASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNI 239 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+L +G K + ++ L A++R GP AP GLYF V+Y Sbjct: 240 VGTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >gi|21672480|ref|NP_660547.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091459|sp|Q8K9U4|TRUA_BUCAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21623097|gb|AAM67758.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 263 Score = 170 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 3/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+GS Y GWQ QK S+IQ IEKA+ + V V AGRTDSGVH++ QV Sbjct: 7 KKFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + +N+YL S IS+ + V + F+AR+SAI RSY Y I + Sbjct: 67 IHFTSISFRSDFSWIVGVNSYL--SKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKC 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ + R+ + K L+ + M AQ L+G HDF++FRS CQ+ SP RTI ++ Sbjct: 125 RSAIFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLK 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 NL+ I + A SFL+ +R+ VGSL + D ++K L +DR GP GLY Sbjct: 185 NLVIIDITANSFLYHMVRNIVGSLIQINDNTKK-NYIKKILDKKDRNYAGPTVSARGLYL 243 Query: 242 DSVEY 246 V+Y Sbjct: 244 FFVKY 248 >gi|326938210|gb|AEA14106.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar chinensis CT-43] Length = 245 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|91974561|ref|YP_567220.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] gi|123749504|sp|Q13F20|TRUA_RHOPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91681017|gb|ABE37319.1| tRNA pseudouridine synthase A [Rhodopseudomonas palustris BisB5] Length = 245 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q S+QG++E A GE V VHGAGRTD+GVHAL Q Sbjct: 1 MPRYKLTIEYDGAPFCGWQLQPVLPSVQGALEAAALATCGEAVRVHGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ + + L ALNA+ +++L+ IV F ARFSAIRR Y YRI+ R+ Sbjct: 61 VAHLDIAKPFRADRLRDALNAH-VRPYPVAVLSTEIVPDSFEARFSAIRRHYRYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LALE G+ W +PK LD + M AAQ L+G+HDFTTFR CQA+SP +T+D DV Sbjct: 120 SNLALEIGKVWRVPKPLDTDAMHRAAQVLIGKHDFTTFRDTECQAASPEKTLDVLDVVRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ ++I ARS+LH+Q+RS VGSL VG+G+W++ DL AL A+ R CGP+APP+GLY Sbjct: 180 GDCVDIITSARSYLHSQVRSMVGSLVWVGEGRWSADDLAAALAARRRSACGPVAPPDGLY 239 Query: 241 FDSVEY 246 V+Y Sbjct: 240 LVKVDY 245 >gi|224534868|ref|ZP_03675437.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] gi|224513808|gb|EEF84133.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S] Length = 246 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 124/246 (50%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSIYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L S IL L V FH RFSA +R Y Y I+ Sbjct: 61 IITFDMNINIQLNNLKKALNAILLKSGI-KILKLKHVKNSFHPRFSAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWESYQAYYVNKKLNISNLNQMAKILIGSHDFTTFSCIKDRSKSKFRHIHFAKFKKK 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS VG++ + + + EK LQ+++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIVGTMLDIEIKNESISTFEKILQSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|118476179|ref|YP_893330.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228925681|ref|ZP_04088768.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931917|ref|ZP_04094811.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944241|ref|ZP_04106617.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089549|ref|ZP_04220816.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|229120089|ref|ZP_04249341.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|118415404|gb|ABK83823.1| tRNA pseudouridine synthase A [Bacillus thuringiensis str. Al Hakam] gi|228663327|gb|EEL18915.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 95/8201] gi|228693765|gb|EEL47461.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-42] gi|228815392|gb|EEM61637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827702|gb|EEM73442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833956|gb|EEM79506.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 250 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|160942942|ref|ZP_02090181.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] gi|158445843|gb|EDP22846.1| hypothetical protein FAEPRAM212_00419 [Faecalibacterium prausnitzii M21/2] Length = 254 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 124/248 (50%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL Sbjct: 1 MNFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFR 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F P L ALN +L I +L V + FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPPQKLPLALNQHL--PPDIRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDVN 178 + +P+ LD M+ AAQ VG HDF + A++ +RTI V Sbjct: 119 DSPFDAAYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ ++I V A +L+ +R G+L VG G+ + D+ L ++DR GP P +G Sbjct: 179 RRGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKG 238 Query: 239 LYFDSVEY 246 L+ V+Y Sbjct: 239 LFLKCVDY 246 >gi|327438309|dbj|BAK14674.1| pseudouridylate synthase [Solibacillus silvestris StLB046] Length = 249 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M+R I Y+G+G+ G+Q Q ++Q IEK + + G V + +GRTD+ VHA Sbjct: 1 MVRLKTTISYDGTGFAGYQVQPGERTVQLEIEKVLTTMQKGTQVKITASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E P KALN L I +L++ V + FHAR+ + Y Y Sbjct: 61 QVIHFDTALEIPPEKFQKALNVQL--PRDIRVLHMEQVKEDFHARYDVSGKRYRYIWDCS 118 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + E MR AA+ +VG HDF+ F + + +RT++ ++ Sbjct: 119 TVQSPFRRHYTVETGGVKPNVEAMREAAKAIVGTHDFSCFCAANTSVVDKVRTVETLELV 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + + + FL+ +R G+L VG G+ ++ LEK + + DR + G AP G Sbjct: 179 WQGEELHMTISGNGFLYNMVRIIAGTLWEVGIGRREASSLEKTIASMDRAQAGKTAPAHG 238 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 239 LYLEQVFY 246 >gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707] Length = 296 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++ G IE+ + + V++ AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQPGRRTVCGEIEEKLSAIVRTPVLLTVAGRTDAGVHASGQV 80 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + +P + + + + + +S + F ARFSAIRR Y YR+ T Sbjct: 81 AHVDVPADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAP 140 Query: 121 APLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + R + PK +D + MR A+ L+G HDF F + ++ +R + FD Sbjct: 141 YGAEPLRARDTVAWPKDVDVDAMRKASSRLLGLHDFAAFC-KRREGATTVRELQRFDWEQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + V A +F + +RS VG+ VG+G+ T + L ++R +AP GL Sbjct: 200 SGHELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAPAHGL 259 Query: 240 YFDSVEY 246 V+Y Sbjct: 260 SLIRVDY 266 >gi|291542954|emb|CBL16064.1| pseudouridylate synthase I [Ruminococcus bromii L2-63] Length = 266 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G + GWQ Q+N ++Q + + A+ + G V G RTDSGVHA Sbjct: 11 RNLLLTISYDGKEFHGWQIQQNAMTVQEAFQTALSKIIGNDFDVKGCSRTDSGVHANMYC 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 P L ALN +L +S + V FHAR+S + Y+Y+I + Sbjct: 71 ISLKTEHPIKPERLKAALNRWLPLSIAVLDC--KEVAPDFHARYSCTSKEYIYKIWNSEV 128 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSF 180 G A +D + AAQ VGRHDFT+F ++ + R + F V Sbjct: 129 RNPFLDGYALHYRYKIDENLLDKAAQAYVGRHDFTSFCTLDNREKGDMTRNVKAFSVTRE 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ ++V A FL+ +R VG+L + GK ++ ++ ++RK GP A GLY Sbjct: 189 GDLVTMKVEADGFLYNMVRIMVGTLLRIQQGKIAPDEIPSIIEKKNRKYSGPTAQACGLY 248 Query: 241 FDSVEY 246 + V Y Sbjct: 249 LNCVNY 254 >gi|313895792|ref|ZP_07829346.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] gi|312975217|gb|EFR40678.1| tRNA pseudouridine synthase A [Selenomonas sp. oral taxon 137 str. F0430] Length = 266 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +EK + V GE V + AGRTD+GVHA Q Sbjct: 14 RNIALRLSYDGTRYHGFQRQSLPVVAVQNVLEKVLAEVCGESVELAAAGRTDTGVHAYGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F L +A+N L + + F AR S+ ++YLYRI Sbjct: 74 VVNFFTDGRIPVAQLPRAVNGLLPPDIAVMAAWEAER--DFSARHSSTGKAYLYRIERCT 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW I + LD MR + LVG HD+++FR+ SP+RT+D ++ Sbjct: 132 VPNPFTRNYAWQIFRPLDVAAMRTVLRLLVGTHDYSSFRAAGGAPMSPVRTLDEIRLDEE 191 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + FL+ +R+ + ++ VG G+ ++ + A DR+ P AP GL Sbjct: 192 EGGQLSCYMHGNGFLYHMVRNIMSTVVHVGLGRISTDRFTEIFAAHDRRLASPTAPACGL 251 Query: 240 YFDSVEYS 247 Y V+Y+ Sbjct: 252 YLLHVDYA 259 >gi|37523138|ref|NP_926515.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] gi|42559743|sp|Q7MBB9|TRUA_GLOVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|35214141|dbj|BAC91510.1| tRNA-pseudouridine synthase A [Gloeobacter violaceus PCC 7421] Length = 304 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 116/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + ++Y G +FGWQ Q ++Q +E+A + V H AGRTD+GVHA QV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD ++ P + LN+ L D I++ + V +HARF+A+ R Y Y I P Sbjct: 76 HFDTHKKLAPETWVRGLNSLL--PDDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTVP 133 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E + A L G HDF FR + + + G Sbjct: 134 DLFVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I IRV A SFL+ +R +G+L VG G+W+ QA +R++ APP+GL Sbjct: 194 EQIAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCL 253 Query: 242 DSVEY 246 V Y Sbjct: 254 VGVGY 258 >gi|315127206|ref|YP_004069209.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] gi|315015720|gb|ADT69058.1| tRNA pseudouridine synthase A [Pseudoalteromonas sp. SM9913] Length = 264 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 127/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSRICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFDTHAEREMVAFTLGMNTLL--PKDIAIRFAQPVAEDFHARFSATARRYRYVIYNYAF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVLNEGVTHFHHPLDEVKMQQACQYLLGEHDFTSFRALHCQANTATRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 AYVIIDIKANAFLHHMVRNITGCLMDIGLHKHEPIWLKELLDVKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|225862468|ref|YP_002747846.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] gi|225790549|gb|ACO30766.1| tRNA pseudouridine synthase A [Bacillus cereus 03BB102] Length = 245 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|228937724|ref|ZP_04100358.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970604|ref|ZP_04131252.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977183|ref|ZP_04137582.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228782492|gb|EEM30671.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis Bt407] gi|228789070|gb|EEM37001.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821932|gb|EEM67926.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 250 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVYDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HL G HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKAAAKHLAGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|242239994|ref|YP_002988175.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] gi|242132051|gb|ACS86353.1| tRNA pseudouridine synthase A [Dickeya dadantii Ech703] Length = 275 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 14 KIALGIEYDGSRYYGWQRQAEVESVQECLEKALSNVANEPISVFCAGRTDAGVHATGQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +NA+L I++ ++ VD+ FHARFSA R Y Y I + Sbjct: 74 HFTTGAVRKDAAWTMGVNAHL--PSDIAVRWVTTVDEAFHARFSATARRYRYVIYNHRYR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD M A Q L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 132 PAILSHGVTHYHLPLDAARMERAGQCLLGENDFTSFRAVQCQSRTPWRNVKHLKVMRHGA 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL VG G + + L A+DR A +GLY Sbjct: 192 YIVVDIKANAFVHHMVRNIVGSLMEVGCGNQPEGWIAELLAAKDRTLAAATARADGLYLV 251 Query: 243 SVEY 246 +V+Y Sbjct: 252 AVDY 255 >gi|37527059|ref|NP_930403.1| tRNA pseudouridine synthase A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786492|emb|CAE15547.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 279 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 16 MKIALGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD+ FHARFSA R Y Y I + Sbjct: 76 VHFETSVQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 134 RPAVLANGVTHFHYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 194 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLYL 253 Query: 242 DSVEY 246 +V+Y Sbjct: 254 VAVDY 258 >gi|255348836|ref|ZP_05380843.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70] gi|255503376|ref|ZP_05381766.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 70s] Length = 267 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|296535340|ref|ZP_06897543.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] gi|296264339|gb|EFH10761.1| tRNA-pseudouridine synthase I [Roseomonas cervicalis ATCC 49957] Length = 267 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 146/247 (59%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +++E++G+ + GWQRQ +G S+Q +E+A + G+ AGRTDSGVHA Sbjct: 15 MPRYALLVEFDGAPFVGWQRQPSGLSVQQVLEEAASPLNQGQPAATQAAGRTDSGVHAEG 74 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V D+ + PV L +ALN + +++L +++ ++ ARFS I R+Y YRI+ R Sbjct: 75 MVVQIDIAQALDPVRLREALNYH-TRPHPVAVLGVAVPPAEWSARFSCIGRAYRYRILNR 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL+ GR W + +LD M AAQ L+G+HDF+ FR+ CQA +RT+D DV Sbjct: 134 RPRPALQAGRVWHVGPALDAAAMHAAAQGLLGKHDFSAFRAASCQAKHALRTLDRLDVRR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I ARSFLH Q+R+ VG+L VG G+ + L+A++R + G AP EGL Sbjct: 194 EGEEVVIHTAARSFLHHQVRNMVGTLAQVGLGRQGVDWPRRLLEARERSQAGQTAPAEGL 253 Query: 240 YFDSVEY 246 F Y Sbjct: 254 TFLEARY 260 >gi|260881651|ref|ZP_05404943.2| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] gi|260848088|gb|EEX68095.1| tRNA pseudouridine synthase A [Mitsuokella multacida DSM 20544] Length = 264 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ Y G+QRQ ++Q +E+ + + G+ + + AGRTD+GVHA Q Sbjct: 14 RNIVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAGVHAYGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + +A N+ L D I + D F AR SA ++Y+YRI + Sbjct: 74 VVNFFTDGRIPVDRIARAANSLL--PDDIVVRAAGEADTDFSARHSAKSKTYVYRIQQGE 131 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW I + LD MR A ++G HDF+ FR+ SP+RT+ + Sbjct: 132 VPDPMTARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPVRTMYEATIEEA 191 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 R+ FL+ +R+ +G+L VG G T + L+ +DR + AP GL Sbjct: 192 AGQQLICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAPACGL 251 Query: 240 YFDSVEY 246 Y + V+Y Sbjct: 252 YLEHVDY 258 >gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2] Length = 271 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 C+ + Y+G+ Y G+QRQ +G +IQG++E + E V ++ AGRTD+GVHA Sbjct: 5 RNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLETVWAKLVEEQVTLNTAGRTDTGVHAAG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + KA N+ L I IL + FHARFSA + Y YRI Sbjct: 65 QVVNFRTGARIPVDKIPKAFNSLL--PRDIRILAAQEAAEDFHARFSAKWKRYDYRIDNH 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + P LD + M+ AQ+LVGRH+F F + + + RT+ V Sbjct: 123 PVADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAE 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L VG + ++ L + DRK G A P+GL Sbjct: 183 NQGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGL 242 Query: 240 YFDSVEY 246 V Y Sbjct: 243 TLSYVHY 249 >gi|126658015|ref|ZP_01729167.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] gi|126620653|gb|EAZ91370.1| tRNA pseudouridine synthase A [Cyanothece sp. CCY0110] Length = 285 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQRQ N ++Q IE +I V G +HGAGRTD+GVHA QV Sbjct: 11 KRVALVIQYQGSRFHGWQRQPNQRTVQEVIESSIAEVLGYHTPIHGAGRTDAGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + P + LN L D I I + V +HARFSA+ R Y Y T + Sbjct: 71 AHFDYISPIPPQRWVEILNQRL--PDDILIRGCAEVSLTWHARFSALWRRYRYSFYTDKC 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + LD E M+ A L+GRH FR + Sbjct: 129 PNLFVRPFSWHYYYEPLDAELMQKALTPLLGRHHLAAFRRAGSHRHHSWVEVQETRCYRQ 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + T+ + Q Q R++ AP +GL Sbjct: 189 GQFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLTNFTEIWQNQRREQVKYSAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|254673733|emb|CBA09384.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha275] Length = 266 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + + Y+GS ++GWQ+Q +G ++Q ++E A+ + GE V AGRTD+GVHA Q Sbjct: 7 QRWAITLSYDGSRFYGWQKQADGVPTVQAALETALAQIAGEAVSTTVAGRTDTGVHATAQ 66 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + + +L+ V +FHARF A R Y Y + + Sbjct: 67 VVHFDTTAVRPQQAWIRG-RKMPTCPKALPVLHARQVALEFHARFDAYGRHYRYLLESSP 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K RA LD MR AA +L+G DF++FR+ CQA SPI+TI ++ Sbjct: 126 VRSPLLKNRAGWTHLKLDIGPMRQAATYLIGEQDFSSFRAAECQAKSPIKTIYRANLTQS 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + + +FLH +R+ +G+L VG G+ + +Q + R + P P+GLY Sbjct: 186 AGLVRLDLHGNAFLHHMVRNIMGALVYVGSGRLSVEGFAALIQERSRLKAPPTFMPDGLY 245 Query: 241 FDSVEY 246 V+Y Sbjct: 246 LTGVDY 251 >gi|255655803|ref|ZP_05401212.1| tRNA pseudouridine synthase A [Clostridium difficile QCD-23m63] gi|296450959|ref|ZP_06892706.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296879075|ref|ZP_06903071.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] gi|296260177|gb|EFH07025.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP08] gi|296429948|gb|EFH15799.1| tRNA-pseudouridine synthase I [Clostridium difficile NAP07] Length = 245 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M MI+ Y+GS Y G+Q+ N +IQ +E + +T E V + G+GRTD G HA Sbjct: 1 MRNIKMIVAYDGSRYKGYQKLGDNNMTIQEKLENVLSKMTNETVEIIGSGRTDMGAHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K L YL + I + + VD++FH+R++ ++Y+YRI Sbjct: 61 QVVNFRTNCMDSLDKIQKYLYEYL--PEDIVVKAVEEVDERFHSRYNVKSKTYMYRIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A + K LD + MR A+++LVG HDFT+F S + S +R I ++ Sbjct: 119 KYHNPFIRKYATHVSKKLDLDRMRKASEYLVGEHDFTSFASSKSKKKSNVREIYSINIKE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N+IEI V FL+ +R VG+L VG + D++ L+++DR + AP +GL Sbjct: 179 DDNIIEIYVEGNGFLYNMVRIIVGALIDVGLKRRAPQDIKYMLESRDRCQSSDTAPAKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 CLWKVRY 245 >gi|255507054|ref|ZP_05382693.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D(s)2923] gi|289525508|emb|CBJ14985.1| tRNA pseudouridine synthase A [Chlamydia trachomatis Sweden2] gi|296435064|gb|ADH17242.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/150] gi|296438784|gb|ADH20937.1| tRNA pseudouridine synthase A [Chlamydia trachomatis E/11023] Length = 267 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTEKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEYLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|327480383|gb|AEA83693.1| tRNA pseudouridine synthase A [Pseudomonas stutzeri DSM 4166] Length = 275 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 127/246 (51%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY GS Y G+QRQ+ SIQ S+E A+ V G V + AGRTD+ VHA Q Sbjct: 8 RIALGVEYKGSRYRGFQRQRAGVPSIQESLENALTRVAGGHPVTLSCAGRTDALVHASGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + F ARFSA+ R Y Y I Q Sbjct: 68 VVHFDTPVERSMHAWVMGANMNL--PPDISVTWAKKMPPHFDARFSAMARRYRYVIYNDQ 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA LVG HDF+ FR+ CQA SPI+TI H ++ F Sbjct: 126 IRPAHMAEEVTWNHRPLDIERMRAAAAALVGTHDFSAFRARQCQAKSPIKTIHHLELLQF 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI I V A +FLH +R+F G L +G G+ + L+++ R+ G A P GLY Sbjct: 186 GRLIVIDVRANAFLHHMVRNFAGVLMTIGAGERPVEWAAQVLESRVRRTGGVTAHPYGLY 245 Query: 241 FDSVEY 246 V+Y Sbjct: 246 LVEVDY 251 >gi|332290819|ref|YP_004429428.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] gi|332168905|gb|AEE18160.1| tRNA pseudouridine synthase A [Krokinobacter diaphorus 4H-3-7-5] Length = 257 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 112/250 (44%), Gaps = 9/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G Y GWQRQ N ++Q +IEKA+ ++ + V + GAGRTD+GVHA + Sbjct: 1 MRYFIELSYFGKHYHGWQRQPNAVTVQETIEKALSMILRKPVQIMGAGRTDAGVHATQMY 60 Query: 62 AHFDLVREWVPVIL-----CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AHFD E N L I+ + V + H RF A RSY+YRI Sbjct: 61 AHFDWDGEQFTTQESIEKLTHKFNRLL--PKDIAFKRIFQVADKAHTRFDATSRSYVYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + A + + E M AA L+ DF F + ++ + I Sbjct: 119 --GKEKNPFTSDHAPTVRNEVHIEAMNKAAAILLDYSDFECFSKSNTDVNTYLCDITRAT 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + A FL +R+ VG+L +G+GK T + + + + R + G P Sbjct: 177 WIETEDEYHFHITANRFLRNMVRAIVGTLLEIGEGKRDITWMHEVITGKSRSQAGKSVPG 236 Query: 237 EGLYFDSVEY 246 GLY + Y Sbjct: 237 RGLYLTEILY 246 >gi|228983685|ref|ZP_04143885.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228776037|gb|EEM24403.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 250 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229148825|ref|ZP_04277073.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] gi|228634619|gb|EEK91200.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1550] Length = 250 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDVEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|87200906|ref|YP_498163.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] gi|87136587|gb|ABD27329.1| tRNA pseudouridine synthase A [Novosphingobium aromaticivorans DSM 12444] Length = 254 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 167/246 (67%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + +E+NG Y G+QRQ +G S+Q ++E+A+ VTGE V ++ AGRTD+GVHAL Sbjct: 6 TRFALTLEWNGGPYMGFQRQSHGPSVQQAVEEAVHSVTGEAVALNAAGRTDTGVHALGMR 65 Query: 62 AHFDLVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFDL R + P + +ALNA L+ +++L+ V +HARFS R+Y YRII R+ Sbjct: 66 AHFDLSRAFDPFRMMEALNARLRLAGHPVAVLDCIEVAPDWHARFSCTGRAYEYRIINRR 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL L+ GRAW I K LD M AAQ LVG HDFTTFRS+HCQ++SP++T+D DV Sbjct: 126 APLTLDLGRAWRIAKPLDETVMHEAAQLLVGHHDFTTFRSVHCQSASPLKTLDRLDVRRD 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + ARSFLH Q+RS VG L LVG G+W+ L +AL A+DR G APPEGLY Sbjct: 186 GDRVIVEAAARSFLHHQVRSMVGCLALVGQGQWSVAQLGEALAAKDRSRLGLNAPPEGLY 245 Query: 241 FDSVEY 246 F S +Y Sbjct: 246 FVSAQY 251 >gi|324324528|gb|ADY19788.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+++ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILESKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|76789199|ref|YP_328285.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] gi|123606852|sp|Q3KLN5|TRUA_CHLTA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76167729|gb|AAX50737.1| tRNA pseudouridine synthase A [Chlamydia trachomatis A/HAR-13] Length = 267 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIHDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|317048970|ref|YP_004116618.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] gi|316950587|gb|ADU70062.1| tRNA pseudouridine synthase A [Pantoea sp. At-9b] Length = 268 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ+ S+Q +EKA+ V V V AGRTD+GVH QV Sbjct: 8 HKLALGIEYDGSRYYGWQRQQEVRSVQEKLEKALSKVANHDVSVFCAGRTDAGVHGTGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V + FHARFSA R Y Y I ++ Sbjct: 68 VHFETTSQRADGAWTLGVNANL--PPDIAVRWVKAVPETFHARFSATARRYRYVIYNQRL 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 126 RPAILGSGVTHFYHPLDVEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVMHLNVTRQG 185 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 186 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNQPESWMATLLAAKDRTLAAATARAEGLYL 245 Query: 242 DSVEY 246 +V+Y Sbjct: 246 VAVDY 250 >gi|33519947|ref|NP_878779.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] gi|42559760|sp|Q7U356|TRUA_BLOFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33504293|emb|CAD83185.1| tRNA pseudouridine synthase A [Candidatus Blochmannia floridanus] Length = 252 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + +EY+GS Y GWQ+QK SSIQ +E A+ V+ E ++V GRTDSGVHAL Q Sbjct: 1 MQKLVLGVEYDGSMYCGWQKQKCVSSIQSCLEYALSKVSSESILVFCGGRTDSGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HF+ + +N +L + I + +S VD FHARFSAI R Y Y I + Sbjct: 61 IVHFETQLKCSRSAWTLGVNCHL--PNDICVRWVSEVDNSFHARFSAISRRYCYFIYNNR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ R W + LD M AAQ+L+G +DF+ FRS Q+ S R I H V Sbjct: 119 IRSAVFCKRVWSYSRFLDVNKMSKAAQYLLGENDFSVFRSSGSQSCSTNRNIYHLRVIRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I + A +FL+ +R+ VGSL VG G T + + L+ AP GLY Sbjct: 179 GHYVVIDIRANAFLYRMVRNIVGSLVEVGCGNKPVTWILELLKNYRGSLNRITAPASGLY 238 Query: 241 FDSVEY 246 ++Y Sbjct: 239 LVEIKY 244 >gi|75761576|ref|ZP_00741532.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895546|ref|YP_002443957.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228899172|ref|ZP_04063442.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] gi|228963570|ref|ZP_04124723.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|74490946|gb|EAO54206.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543347|gb|ACK95741.1| tRNA pseudouridine synthase A [Bacillus cereus G9842] gi|228796088|gb|EEM43543.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860441|gb|EEN04831.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 4222] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|307244438|ref|ZP_07526548.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] gi|306492195|gb|EFM64238.1| tRNA pseudouridine synthase A [Peptostreptococcus stomatis DSM 17678] Length = 253 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 +++ Y G+ Y GWQ+Q + IQG +E A + + + G+GRTD+GVHAL Q Sbjct: 4 KNIMLVVAYEGTRYCGWQKQPDSPGIQGELEYACTQAFNKKNINITGSGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F + + + LN L I++L V +FHAR SA +++Y Y+I + Sbjct: 64 VANFTVDTTIPVDKIPEVLNNRL--PKDIAVLRAQEVKSEFHARHSAHKKTYRYQIYPSR 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K A+ + LD + M+ HL+G+HDF F S S +RTI D+ Sbjct: 122 IRSPFLKDFAYQVKYDLDLDRMKEEIIHLLGQHDFKGFMSSGSDIKSTVRTIYRADIYKR 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI I V FL+ +R G++ +G GK T L + + R G APP+GL+ Sbjct: 182 GDLIVIEVEGNGFLYNMVRIIAGTMVDIGRGKIT-ESLRDIIGSGVRARAGHTAPPQGLF 240 Query: 241 FDSVEY 246 V+Y Sbjct: 241 LVGVDY 246 >gi|300724021|ref|YP_003713336.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] gi|297630553|emb|CBJ91218.1| pseudouridylate synthase I [Xenorhabdus nematophila ATCC 19061] Length = 281 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+Q +EKA+ V E + V AGRTD+GVHA QV Sbjct: 16 VKIALGIEYDGSRYYGWQRQQEVRSVQECLEKALSQVANEPISVFCAGRTDAGVHATGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD +FHARFSA R Y Y I + Sbjct: 76 VHFETSAQRKDAAWTMGVNTHL--PSNIAVRWIKTVDDEFHARFSATARRYRYVIFNHRY 133 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ L+G +DFT+FR++ CQ++SP R + H +V+ G Sbjct: 134 RPAVLAQGIMHFHSPLDEKKMHEAAQSLLGENDFTSFRAVQCQSNSPWRNMMHINVSRHG 193 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + + A +F+H +R+ VGSL +G G + + L +DR + A +GLY Sbjct: 194 HYIVVDIKANAFVHHMVRNIVGSLLEIGCGNQNIGWMAELLTLKDRTKAAATAKADGLYL 253 Query: 242 DSVEY 246 +V+Y Sbjct: 254 VAVDY 258 >gi|296435991|gb|ADH18165.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9768] gi|296437852|gb|ADH20013.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11074] gi|297140352|gb|ADH97110.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/9301] Length = 267 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P+ + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPVPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|229077782|ref|ZP_04210409.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] gi|228705510|gb|EEL57869.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-2] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HL+G HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLIGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|226951929|ref|ZP_03822393.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|294649190|ref|ZP_06726629.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] gi|226837469|gb|EEH69852.1| tRNA-pseudouridine synthase I [Acinetobacter sp. ATCC 27244] gi|292824908|gb|EFF83672.1| tRNA pseudouridine synthase A [Acinetobacter haemolyticus ATCC 19194] Length = 265 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 130/247 (52%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ Q+ +S+Q +IEK + + +++HGAGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVASVQETIEKVLSTIADHPIILHGAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L IS+ + +D+ FHARF A R Y Y + Sbjct: 61 MVAHFDTTAIRPDRGWLMGTNSQL--PKDISLQWIKRMDESFHARFKARARRYRYIVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + ++LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 119 PTRPALLYKQVTHLYQTLDVQKMIAAAAKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ AQDRK G AP +GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDHMFAAQDRKAAGITAPADGL 238 Query: 240 YFDSVEY 246 YF EY Sbjct: 239 YFIQAEY 245 >gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603] Length = 268 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEVDAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y + +E+ Sbjct: 262 YLEKIEF 268 >gi|302038272|ref|YP_003798594.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] gi|300606336|emb|CBK42669.1| tRNA pseudouridine synthase A [Candidatus Nitrospira defluvii] Length = 253 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++EY+G+ Y GWQRQ N +IQ ++E+A+ + + + GAGRTD+GVHA Q Sbjct: 1 MTTFKLVLEYDGTQYAGWQRQPNAPTIQAAVEEALAAIAQTRLTIIGAGRTDAGVHAFGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F R +ALNA+L IS L++ V FHAR+SA + Y Y ++ R Sbjct: 61 VASFRTDRGLSQREWLRALNAHL--PADISALSVKAVPDHFHARYSANGKLYEYHLMNRS 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + RAW++ K LD M AA +L G HDF++F + +P + D+ Sbjct: 119 ERAPLLRERAWMLYKPLDFAAMTEAAAYLTGSHDFSSFETAPTDNENPQCRLQRADLRRQ 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + A FL +RS VG+L VG GK T+ D+ L A+ R G AP GLY Sbjct: 179 GDLIILSFYADRFLKQMVRSMVGTLVEVGQGKRTAADMRTVLAARARAAAGRTAPAHGLY 238 Query: 241 FDSVEYS 247 V+Y+ Sbjct: 239 LVRVDYT 245 >gi|229095128|ref|ZP_04226123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] gi|228688313|gb|EEL42196.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|295698698|ref|YP_003603353.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] gi|291157129|gb|ADD79574.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA] Length = 255 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 137/247 (55%), Gaps = 4/247 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y+GS Y GWQ+QKNG SIQ +E ++ +T E + + GRTDSGVHA QV Sbjct: 4 RVALGIQYDGSRYHGWQKQKNGLDSIQKRLESSLKKLTDEDIKTYCGGRTDSGVHAFGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + V+ +N +L IS+L + V +FHARFSAI R Y Y I ++ Sbjct: 64 VHFETYKIRKDVVWVSGVNHFL--PKDISVLWVKPVSHRFHARFSAISRHYRYLIFNKEI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSF 180 A+ + I K LD ++M AAQ L+G +D +F S S R I + +V F Sbjct: 122 RPAIFRSNVLHISKKLDYKDMNKAAQCLLGENDLISFISFDRRSFRSTKRNIRYINVKRF 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + I +VA SF + +R+ VGSL VG GK + ++K + +DR + GP +GLY Sbjct: 182 DSYVIIDIVANSFAYNMVRNIVGSLIEVGLGKKGTEWIKKLIDLKDRTKSGPKVHSKGLY 241 Query: 241 FDSVEYS 247 + YS Sbjct: 242 LMHINYS 248 >gi|30018678|ref|NP_830309.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206967868|ref|ZP_03228824.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218230891|ref|YP_002365270.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|229068175|ref|ZP_04201482.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|229108094|ref|ZP_04237719.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|229125922|ref|ZP_04254947.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|296501252|ref|YP_003662952.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] gi|42559783|sp|Q813Z9|TRUA2_BACCR RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|29894219|gb|AAP07510.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 14579] gi|206736788|gb|EDZ53935.1| tRNA pseudouridine synthase A [Bacillus cereus AH1134] gi|218158848|gb|ACK58840.1| tRNA pseudouridine synthase A [Bacillus cereus B4264] gi|228657580|gb|EEL13393.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-Cer4] gi|228675369|gb|EEL30588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-15] gi|228714989|gb|EEL66857.1| tRNA pseudouridine synthase A 2 [Bacillus cereus F65185] gi|296322304|gb|ADH05232.1| tRNA pseudouridine synthase A [Bacillus thuringiensis BMB171] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|317484413|ref|ZP_07943328.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] gi|316924332|gb|EFV45503.1| tRNA pseudouridine synthase A [Bilophila wadsworthia 3_1_6] Length = 269 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 121/257 (47%), Gaps = 13/257 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ Y GWQ Q KN +IQ IE A+ V GE V VHGAGRTD+GV Sbjct: 1 MPRLKLTIAYVGTQYHGWQTQARKNASPLPTIQNIIEDAVAHVLGERVHVHGAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + ALN L I I + +V FHA+ SA+R++Y YR Sbjct: 61 HAEAQVAHLDVPESRARMDWQLALNTLL--PRDIRIADAVLVPDTFHAQHSAVRKTYEYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + +D E M +++L+G+ DF + ++ + +RTI Sbjct: 119 LWLSKRYTPPQLFPFVWACGPVDVERMDEGSRYLLGKRDFASLKNAGTDLRTTVRTILSI 178 Query: 176 DVNSFGNLIE------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 G L E R A FL +R+ +G L VG GK D+ L A DR+ Sbjct: 179 TRTPEGQLPEDCLELTWRFEADGFLKQMVRNTMGLLVAVGRGKLEPADIPGILDACDRRI 238 Query: 230 CGPLAPPEGLYFDSVEY 246 AP GL V Y Sbjct: 239 APLTAPACGLTMKKVWY 255 >gi|291459136|ref|ZP_06598526.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418390|gb|EFE92109.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str. F0262] Length = 252 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 124/251 (49%), Gaps = 9/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT------GEIVVVHGAGRTDSGV 55 Y ++I Y+GS Y GW+RQ +IQG IE + + + V + GAGRTD+GV Sbjct: 4 NYKLLISYDGSRYLGWERQPGIDRTIQGKIEAVLSRMLLAEGKLQQPVDLIGAGRTDAGV 63 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA A+ L + + LN YL D IS+ LSI K+FHAR+ AI + Y Y Sbjct: 64 HARGMCANVFLDSKRSEGEIRAYLNRYL--PDDISVDALSICGKRFHARYHAIGKLYRYS 121 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E+ ++P+ D E MR+AA+ L+G D+ +F S +R ID Sbjct: 122 CYFGEKKPVFERKYLLILPEMPDVERMRLAAEALIGEKDYRSFCGNPRMKKSTLRRIDRI 181 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ I FL QIR VG+L +G GK D+E+ L A+DR + G A Sbjct: 182 EILERKGCIRFYFHGNGFLQHQIRIMVGTLLEIGLGKREPGDMERILLAKDRSQAGYTAE 241 Query: 236 PEGLYFDSVEY 246 GL VEY Sbjct: 242 AGGLCLMRVEY 252 >gi|228913175|ref|ZP_04076814.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846580|gb|EEM91593.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 250 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|15605190|ref|NP_219976.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D/UW-3/CX] gi|8134751|sp|O84469|TRUA_CHLTR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3328897|gb|AAC68063.1| Pseudouridylate Synthase I [Chlamydia trachomatis D/UW-3/CX] gi|296436918|gb|ADH19088.1| tRNA pseudouridine synthase A [Chlamydia trachomatis G/11222] gi|297748594|gb|ADI51140.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-EC] gi|297749474|gb|ADI52152.1| tRNA pseudouridine synthase A [Chlamydia trachomatis D-LC] Length = 267 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D+ FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDEDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|327539206|gb|EGF25829.1| tRNA pseudouridine synthase A [Rhodopirellula baltica WH47] Length = 276 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 75/253 (29%), Positives = 118/253 (46%), Gaps = 14/253 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y GWQ Q SIQ +E+ I + G V V G+GRTD+GVHA+ QVA Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVARCV 71 Query: 66 LV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + V L +A+N+ L + I + + ++FH A + Y Y + + Sbjct: 72 LPAWKANTVALQRAINSKL--PNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRDP 129 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 + +D M+ AA VGRHDF F+ + S +RTI Sbjct: 130 FANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHLARWIPRVATG 189 Query: 182 --------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + FL+ +R+ +G++ VG GK +++ L ++DRK GP Sbjct: 190 PTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKPLDWIDEVLASRDRKMAGPT 249 Query: 234 APPEGLYFDSVEY 246 APP+GL+ V+Y Sbjct: 250 APPQGLFLCRVDY 262 >gi|229009911|ref|ZP_04167130.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] gi|229131424|ref|ZP_04260320.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228652008|gb|EEL07949.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196] gi|228751342|gb|EEM01149.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048] Length = 268 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 24 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 83 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 84 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 142 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 202 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 261 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 262 YLENVEF 268 >gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] gi|254789604|sp|A1QYG5|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135] Length = 245 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y+G+Q Q +IQG IEK + ++ + +H AGRTD GVHA Q Sbjct: 1 MKKVLAKITYDGSLYYGFQIQPKKPTIQGEIEKVLEKISKTKIKIHSAGRTDKGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ LK I L F RF A RR Y Y I+ + Sbjct: 61 IISFYIKINIKLKNLKTAINSLLKDDIRIIKLKYVEDK--FQPRFDAKRRKYSYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E RA+ + K L+ + A+ L+G HDFTTF I Q +S ++ I + Sbjct: 119 NHYPWEGYRAYYVKKKLNINRLNEMAEMLIGIHDFTTFSCIRDQTNSKLKEIYYARFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I ++ SFL +RS VG + + +K L +++RK AP + L+ Sbjct: 179 NKFIIFEIIGSSFLWKMVRSIVGVMIDIEIKNEPVDTFKKILNSKNRKLTRKTAPAKALF 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDKVFY 244 >gi|229074353|ref|ZP_04207391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] gi|228708795|gb|EEL60930.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18] Length = 245 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 239 YLESVEF 245 >gi|295102064|emb|CBK99609.1| pseudouridylate synthase I [Faecalibacterium prausnitzii L2-6] Length = 251 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + + Y+G+ Y G+Q Q NG S+ + + A+ V G + G RTD+GVHAL + Sbjct: 1 MNYLLKLSYDGTNYCGFQVQPNGRSVAAAFQDALEAVLGCRPDIKGCSRTDAGVHALGFM 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L ALN +L I L +V FHAR++A ++YLYRI Sbjct: 61 LNFHADTRIPAAKLPLALNQHL--PPDIRALEARVVPDDFHARYAAHTKTYLYRIHNSPI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDVN 178 +P LD + M+ AAQ+ VG+HDF + A++ +RTI DV Sbjct: 119 DSPFAARYYTKVPGRLDADRMQQAAQYFVGKHDFLALCASGSSAAAHGDTVRTITACDVQ 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I+I V A +L+ +R G+L G G+ + L +++RK GP +G Sbjct: 179 RRGDDIDITVTADGYLYNMVRILAGTLCEAGAGRLAPEAVPGILASRERKNAGPTLAAKG 238 Query: 239 LYFDSVEY 246 L+ SV+Y Sbjct: 239 LFLKSVDY 246 >gi|296121106|ref|YP_003628884.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] gi|296013446|gb|ADG66685.1| tRNA pseudouridine synthase A [Planctomyces limnophilus DSM 3776] Length = 305 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 79/265 (29%), Positives = 115/265 (43%), Gaps = 23/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G+ Y GWQ Q NG SIQ ++ +AI T E V++ AGRTD+GVHA+ QV Sbjct: 8 LKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQVVS 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F AL +L D I I + V FHA+F A ++Y Y Sbjct: 68 FSTTSPVPAANFRPALQRFL--PDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVWS 125 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + A LD + M A + +VG DF + + + +RT+ V N Sbjct: 126 PFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRNW 185 Query: 184 I---------------------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + A FL+ +R+ G+L +G GKW L + + Sbjct: 186 NLLGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREIV 245 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 QDR+ G AP GLY V+Y+ Sbjct: 246 DLQDRRRAGETAPAHGLYLWHVDYA 270 >gi|228906232|ref|ZP_04070119.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] gi|228853388|gb|EEM98158.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis IBL 200] Length = 250 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|326388515|ref|ZP_08210109.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] gi|326206980|gb|EGD57803.1| tRNA pseudouridine synthase A [Novosphingobium nitrogenifigens DSM 19370] Length = 261 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 170/246 (69%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G+QRQ +G S+Q ++E+A V GE +V+H AGRTD+GVHA Sbjct: 1 MTRFALTLEWDGTPFMGFQRQAHGPSVQQAVEEATQSVIGEEIVLHAAGRTDTGVHARGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH +L R++ P L +A+NA LK I++L+ V +HARFS I R+Y YRII R+ Sbjct: 61 RAHLELSRDFDPFRLGEAINARLK-PHPIAVLDCVRVADDWHARFSCIGRAYEYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL LE GRAW + + LD E M AAQ LVG HDFTTFRS+HCQA+SP++T+D DV Sbjct: 120 APLTLEAGRAWRVTRPLDAEAMHEAAQVLVGHHDFTTFRSVHCQAASPLKTLDRLDVRRV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W D+ AL+A++R + G APPEGLY Sbjct: 180 GDEVLIAAAARSFLHHQVRSMVGCLALVGLGQWNRDDMAAALEAKNRCKLGLNAPPEGLY 239 Query: 241 FDSVEY 246 F S +Y Sbjct: 240 FISAQY 245 >gi|237802891|ref|YP_002888085.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] gi|237804813|ref|YP_002888967.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|255311275|ref|ZP_05353845.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276] gi|255317577|ref|ZP_05358823.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 6276s] gi|231273113|emb|CAX10026.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/TZ1A828/OT] gi|231274125|emb|CAX10919.1| tRNA pseudouridine synthase A [Chlamydia trachomatis B/Jali20/OT] Length = 267 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLETILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|206974202|ref|ZP_03235119.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217958024|ref|YP_002336568.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|222094223|ref|YP_002528280.1| tRNA pseudouridine synthase a [Bacillus cereus Q1] gi|206747442|gb|EDZ58832.1| tRNA pseudouridine synthase A [Bacillus cereus H3081.97] gi|217065270|gb|ACJ79520.1| tRNA pseudouridine synthase A [Bacillus cereus AH187] gi|221238278|gb|ACM10988.1| tRNA-pseudouridylate synthase I (tRNA pseudouridine synthase A) [Bacillus cereus Q1] Length = 245 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|224542274|ref|ZP_03682813.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] gi|224524816|gb|EEF93921.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM 15897] Length = 245 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 136/245 (55%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I+ Y+G+ ++GWQ Q + ++Q I+KAI+ +T E V +H +GRTD+GVHA+ QV Sbjct: 1 MRIKCIVTYDGTHFYGWQIQPDKRTVQEEIQKAIYKITHEEVTIHSSGRTDAGVHAVGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ +E +ALN +L D I I + IVD+ FHAR+SA ++ Y Y + T+ Sbjct: 61 FHFDINKEIPEKQWIRALNNFL--PDDIYIKDSFIVDESFHARYSAKKKEYRYLVSTKP- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +E+ + +SLD E MR A+ +G HDF +F + + IR I+ D+ Sbjct: 118 YNPIERLYVYQHNRSLDIEAMRECAKIFLGEHDFASFCVFNGLGDT-IRVIETIDIQEKD 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ +R + F +R G+L VG T +E L ++ +K+C A PEGLY Sbjct: 177 GIVTMRFIGNGFRRYMVRLITGALIQVGSHWRTKEFVEDLLNSKGKKKCLFKAKPEGLYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 QEVYY 241 >gi|49476819|ref|YP_034755.1| tRNA pseudouridine synthase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|62901429|sp|Q6HNW5|TRUA2_BACHK RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49328375|gb|AAT59021.1| tRNA pseudouridine synthase I (tRNA pseudouridine synthase A) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 245 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHNRFHARYNSKVKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|149279607|ref|ZP_01885736.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149229643|gb|EDM35033.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 283 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 114/249 (45%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + YNG+ Y GWQ Q N ++Q ++KA+ + + V G GRTD+GVHA + Sbjct: 35 QRYFIELSYNGTEYHGWQIQPNAVTVQEDLDKALSVFFRQPVATVGCGRTDTGVHATQFF 94 Query: 62 AHFDLVREWVPVILCK----ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 HFDL E + +N+ L I + VD + HARF A R+Y Y + Sbjct: 95 VHFDLPAETASTLDPGRAVTGINSLLSYQIAIGRIFA--VDNEAHARFGATARAYHYHLH 152 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P L R+WL SLD E M AA ++ DF+ F + Q + + Sbjct: 153 FHKDPFKLN--RSWLYKGSLDVEAMNQAAAAILEYTDFSCFSKSNTQTFTNNCKVVEAYF 210 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ + A FL +R+ VG+L VG + + + + + R G P Sbjct: 211 TLTDGGLQFTIRADRFLRNMVRAIVGTLIKVGKKEINLNEFREIIASGSRSNAGQSVPAC 270 Query: 238 GLYFDSVEY 246 GLY +V Y Sbjct: 271 GLYLVNVVY 279 >gi|77360999|ref|YP_340574.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis TAC125] gi|123587603|sp|Q3IF40|TRUA_PSEHT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76875910|emb|CAI87131.1| tRNA pseudouridylate synthase I [Pseudoalteromonas haloplanktis TAC125] Length = 264 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +E A+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVETALSRICNHPVAIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V +N L I+I V FHARFSA R Y Y I Sbjct: 61 VHFDTDAPRDMVAFTLGMNTLL--PKDIAIRFAQPVADDFHARFSATARRYRYVIYNNPL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ +LD M+ A Q+L+G++DFT+FR+IHCQA++ IRTI H V G Sbjct: 119 RGAVLNEGVTHFHHTLDETKMQEACQYLIGKYDFTSFRAIHCQANTAIRTIQHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 SYVIIDIKANAFLHHMVRNITGCLMDIGLHKQQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|42779623|ref|NP_976870.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] gi|51316696|sp|Q73E17|TRUA2_BACC1 RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|42735539|gb|AAS39478.1| tRNA pseudouridine synthase A [Bacillus cereus ATCC 10987] Length = 245 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|85373239|ref|YP_457301.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] gi|123005078|sp|Q2NCT7|TRUA_ERYLH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84786322|gb|ABC62504.1| tRNA pseudouridine synthase A [Erythrobacter litoralis HTCC2594] Length = 247 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 117/246 (47%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G+ + G QRQK+G S+Q ++E+A + + +H AGRTD+GVHAL Sbjct: 1 MTRFALTLEFDGTPFMGLQRQKHGPSVQQAVEEAARATLNQDITLHSAGRTDTGVHALGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +HFD + P L LNA+L+ I++ N I+ + +HARF+ I RSY+YRII R+ Sbjct: 61 RSHFDAETDLTPFRLMGGLNAHLR-PHPIAVTNCEIMPEDWHARFACIGRSYVYRIINRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL +++ RAW +P+ LD E M+ AAQ LVG HDFTTFRS CQA P++++D +V Sbjct: 120 APLTIDRKRAWQVPQQLDHEAMQRAAQLLVGTHDFTTFRSTQCQAKDPVKSLDRLEVERD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + ARSFLH Q+RS VG LKLVG G W ++E+AL A+DR+ G APP GLY Sbjct: 180 GDEIRVHAEARSFLHHQVRSMVGCLKLVGQGTWREEEVEEALLARDRQRLGLNAPPHGLY 239 Query: 241 FDSVEY 246 F + EY Sbjct: 240 FVAAEY 245 >gi|229137290|ref|ZP_04265906.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] gi|228646193|gb|EEL02411.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST26] Length = 250 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229143213|ref|ZP_04271645.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] gi|229177012|ref|ZP_04304407.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228606487|gb|EEK63913.1| tRNA pseudouridine synthase A 2 [Bacillus cereus 172560W] gi|228640294|gb|EEK96692.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST24] Length = 250 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229496121|ref|ZP_04389842.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] gi|229316952|gb|EEN82864.1| tRNA pseudouridine synthase A [Porphyromonas endodontalis ATCC 35406] Length = 264 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 124/250 (49%), Gaps = 8/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I ++GS Y GWQRQ NG ++Q IE+A+ L+ + + GAGRTD+GV+A Sbjct: 1 MPRYFLDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSL 60 Query: 61 VAHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AH D+ + P K+LN L I+I ++ V HARF A S Y Sbjct: 61 PAHVDIPETAKGTPYRWRKSLNGIL--PHNINIRSIRPVQPSAHARFDA--ISRRYLYFI 116 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FD 176 + + + D E M AAQ+L+G HDFT+F +H + I TI + Sbjct: 117 AEERDPFNRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHTNICTIQEAFWS 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +S+ + + + A FL +R+ VG+L VG D+ + ++AQDR G Sbjct: 177 PSSYPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASVRG 236 Query: 237 EGLYFDSVEY 246 E L+ VEY Sbjct: 237 EALFLAHVEY 246 >gi|49183490|ref|YP_026742.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|165870784|ref|ZP_02215437.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167634709|ref|ZP_02393028.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|167640831|ref|ZP_02399090.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|170688574|ref|ZP_02879780.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|170707209|ref|ZP_02897665.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|177654958|ref|ZP_02936652.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|227816641|ref|YP_002816650.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229600408|ref|YP_002865093.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|254686878|ref|ZP_05150736.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CNEVA-9066] gi|254725958|ref|ZP_05187740.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A1055] gi|254738895|ref|ZP_05196597.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Western North America USA6153] gi|254743721|ref|ZP_05201406.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254744486|ref|ZP_05202165.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Kruger B] gi|254756260|ref|ZP_05208289.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Vollum] gi|254762079|ref|ZP_05213928.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] gi|270000592|ref|YP_003329030.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] gi|291612202|ref|YP_003541016.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|62901431|sp|Q6I3T8|TRUA2_BACAN RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|49177417|gb|AAT52793.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Sterne] gi|164713618|gb|EDR19142.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0488] gi|167511225|gb|EDR86612.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0193] gi|167529783|gb|EDR92531.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0442] gi|170127987|gb|EDS96858.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0389] gi|170667434|gb|EDT18191.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0465] gi|172080343|gb|EDT65431.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0174] gi|224552835|gb|ACN55049.1| tRNA pseudouridine synthase A [Bacillus anthracis str. 'Ames Ancestor'] gi|227002712|gb|ACP12455.1| tRNA pseudouridine synthase A [Bacillus anthracis str. CDC 684] gi|229264816|gb|ACQ46453.1| tRNA pseudouridine synthase A [Bacillus anthracis str. A0248] gi|269850281|gb|ACZ49994.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Ames] Length = 245 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYSLEVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + + L+A+ R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLAAEAIPQILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|163938417|ref|YP_001643301.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] gi|163860614|gb|ABY41673.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4] Length = 245 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESIISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV+ Sbjct: 119 EHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 ESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLEADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|229188692|ref|ZP_04315731.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] gi|228594881|gb|EEK52661.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 10876] Length = 250 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMIGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|229015811|ref|ZP_04172787.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] gi|229022018|ref|ZP_04178574.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228739274|gb|EEL89714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1272] gi|228745470|gb|EEL95496.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH1273] Length = 250 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVQDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y +SVE+ Sbjct: 244 YLESVEF 250 >gi|312898257|ref|ZP_07757648.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] gi|310620754|gb|EFQ04323.1| tRNA pseudouridine synthase A [Megasphaera micronuciformis F0359] Length = 266 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ ++G+QRQ + S+Q +E A+ + G + ++GA RTDSGVHA QV Sbjct: 5 KNISLRLAYDGTEFYGFQRQSSLPSVQQHVEAALSGIYGRNIRIYGAARTDSGVHARGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L AL L + + L F R + Y Y ++ Sbjct: 65 VNFYGDDTIPVERLPYALKGSLPPAIVVLSATLERE--NFSVRHDNKGKHYRYTLVNDGV 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AW I K L+CE+M+ AA +L G HDF+ F + +P++T+ V S Sbjct: 123 PDPFMLRYAWYIRKPLNCESMKEAASYLKGTHDFSAFEGANTTPMNPVKTMYGIFVVSKK 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I I VV FL+ +R+ G+L VG G+ +S +++ L+ DR++ G AP +GL Sbjct: 183 NRIIIDVVGSGFLYHMVRNMAGALVDVGMGRKSSQRIKEILKGGDRRKLGATAPAQGLCL 242 Query: 242 DSVEYS 247 + V YS Sbjct: 243 EEVYYS 248 >gi|257440210|ref|ZP_05615965.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] gi|257197244|gb|EEU95528.1| tRNA pseudouridine synthase A [Faecalibacterium prausnitzii A2-165] Length = 249 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + Y+G+ Y G+Q Q NG S+ + + + V + G RTD+GVHAL Sbjct: 1 MQNYLLTLAYDGTNYCGFQVQPNGRSVAQTFQDGLEAVLHSRPDIKGCSRTDAGVHALGF 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +F P L A+N +L I +L +V ++FHAR++A ++YLYRI Sbjct: 61 ALNFHAETRIPPEKLPLAINQHL--PPDIRVLCARVVPEEFHARYAAHTKTYLYRIHNHP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDV 177 ++ +P+ LD + M+ AA+ VG+HDF + A++ +RTI V Sbjct: 119 IDSPFDEKYYTRVPRRLDVDAMQRAAEQFVGKHDFLALCAAGSSAAAHGDTVRTITDCHV 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ ++I V A +L+ +R G+L VG G+ + L ++DR + GP P + Sbjct: 179 TRKGDEVDIEVTADGYLYNMVRILAGTLCEVGAGRMQPDAIPGILASRDRSQAGPTLPAK 238 Query: 238 GLYFDSVEY 246 GL+ + V+Y Sbjct: 239 GLFLEKVDY 247 >gi|255530580|ref|YP_003090952.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255343564|gb|ACU02890.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 261 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 17/260 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQ Q N +++Q ++ A+ + + V G GRTD+GVHA + Sbjct: 1 MQRYFIELSYDGTPYHGWQIQPNATTVQEYLDSALTVYFRQPVSTLGCGRTDTGVHASQF 60 Query: 61 VAHFDLVRE--------------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AHFDL E P+ +NA L I++ + V HARF Sbjct: 61 FAHFDLQTEAEQSEATGIPASKCPDPLRSVNGINALL--PYQIAVKRVFEVANTAHARFD 118 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 A R+Y Y I + P L + +D N + + + Sbjct: 119 ATARAYHYHIHFHKNPFKLNRSWFHKGELDMDAMNRAASILLAHSDFSCFSKSHTQTFTN 178 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + T F+ G L + A FL +R+ VG+L +G + + E+ +++++ Sbjct: 179 NCKITEAFFEEMEDGAL-RFTIRADRFLRNMVRAIVGTLIRIGKNELNLAEFEQIIKSKN 237 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R G P GLY +V Y Sbjct: 238 RSNAGQSVPACGLYLVNVIY 257 >gi|253988932|ref|YP_003040288.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780382|emb|CAQ83543.1| tRNA pseudouridine synthase A [Photorhabdus asymbiotica] Length = 264 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 138/245 (56%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ SIQG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGSQYYGWQRQQEVKSIQGCLEQALSKVADEPISVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA+L I++ + VD+ FHARFSA R Y Y I + Sbjct: 61 VHFETSAQRKDAAWTMGVNAHL--PADIAVRWVKTVDEDFHARFSATARRYRYIIFNHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ+L+G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 119 RPAVLASGVTHFYYPLDEKRMHQAAQYLLGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 179 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMARLLALKDRTKAAATAKSAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|170077660|ref|YP_001734298.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] gi|238689046|sp|B1XJI2|TRUA_SYNP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|169885329|gb|ACA99042.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7002] Length = 274 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ ++Q IE+ I V G+ + +HGAGRTDSGVHA Q Sbjct: 10 KRIALVIQYIGTHFCGWQRQTAERTVQAVIEETISTVVGQKITIHGAGRTDSGVHAAGQF 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ K LN L I+I V + +HA+FSA R Y Y I T Sbjct: 70 AHFECESLIPGYKWAKILNDRL--PPDINIRGACEVSQDWHAQFSAQWRRYRYTIYTHPT 127 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + AW ++ D ++ A L+G H F+ + S + + + Sbjct: 128 PNLFIQPYAWHYYQAPLDETLIQAALTPLLGEHHLAAFQRTGSKRSHAWVNVQAAECSRR 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I + A FL+ +R VG L +G GK + + + + R AP +GL Sbjct: 188 GSFIHIEIQANGFLYGMVRLLVGMLVDIGQGKLSLAQFQDIWKNEKRHLVKYSAPAKGLC 247 Query: 241 FDSVEY 246 V Y Sbjct: 248 LLRVGY 253 >gi|229194805|ref|ZP_04321592.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] gi|228588653|gb|EEK46684.1| tRNA pseudouridine synthase A 2 [Bacillus cereus m1293] Length = 250 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYALDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|123966948|ref|YP_001012029.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] gi|166228749|sp|A2BYR1|TRUA_PROM5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123201314|gb|ABM72922.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9515] Length = 268 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS + GWQRQKN S+Q IE A+F V+ +++ AGRTDSGVHA Q Sbjct: 1 MKRVALLVQYDGSYFSGWQRQKNAISVQEMIEDALFKVSNQMIKTFAAGRTDSGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V K +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDFVIPSDRYANVLNSRL--PSTIRILESVEVKKNWHACYSAVYRHYRYVINNSK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L K KSLD M A ++G HDF F+ S+ + TI ++ Sbjct: 119 IPNLFLNKWSWHRYQKSLDEFLMSKALNGMIGEHDFYAFQKSGSTRSTSVTTIKSIEIER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL+ +RS VG L LVG+ K + + + +++ AP GL Sbjct: 179 TEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKISPEIFKDRWVGKKKQDVHESAPANGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNSVY 245 >gi|262374120|ref|ZP_06067397.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] gi|262311131|gb|EEY92218.1| tRNA pseudouridine synthase A [Acinetobacter junii SH205] Length = 265 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 127/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IE+ G+ Y GWQ Q+ S+Q +IEK + + V++H AGRTD+GVHA Sbjct: 1 MQRYAIGIEFCGTQYRGWQTQQAGVVSVQETIEKVLSKIADHPVILHAAGRTDAGVHATN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D+ FHARF A+ R Y Y + Sbjct: 61 MVAHFDTTAIRPERGWLMGANSQL--PKDISIQWIKCMDENFHARFKAMARRYRYLVYNA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + + LD + M AA G H+F +FR+ CQ++ P+R + H + Sbjct: 119 PTRPALLHKQVTHLYQELDVQKMIKAAAKFEGTHNFESFRAAACQSNQPVRHVKHCRLFE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DR+ G AP +GL Sbjct: 179 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDTMFAAEDRRAAGITAPADGL 238 Query: 240 YFDSVEY 246 YF Y Sbjct: 239 YFIQSYY 245 >gi|22297651|ref|NP_680898.1| tRNA pseudouridine synthase A [Thermosynechococcus elongatus BP-1] gi|34222849|sp|Q8CWM6|TRUA_THEEB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|22293828|dbj|BAC07660.1| tRNA-pseudouridine synthase I [Thermosynechococcus elongatus BP-1] Length = 284 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 107/246 (43%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ ++Q IE+AI V V V AGRTD+GVHA QV Sbjct: 12 QRLALLIQYQGTHFHGWQRQVGQRTVQEVIEQAIASVVNHPVSVVAAGRTDTGVHAAGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 AH + LNA L + I + V +HARFSA+ R Y Y + T Sbjct: 72 AHVTVNSPIPVHRWPGILNARL--PADVVIRAAAAVPPDWHARFSALWRRYRYTLYTDPC 129 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L LD M Q LVGRH + F + + Sbjct: 130 PNIFLRPWTWHYYYAPLDVAKMAAVLQPLVGRHHLSAFHRSGSNRAHSWVEVQAVSCQRR 189 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+EI V A FL+ +R VG L VG G+ + + Q + R APP GL Sbjct: 190 GALVEIEVQASGFLYGMMRLLVGLLVQVGQGQRSPASFTEIWQQEQRHLVKYAAPPSGLC 249 Query: 241 FDSVEY 246 V Y Sbjct: 250 LLGVGY 255 >gi|75906940|ref|YP_321236.1| tRNA pseudouridine synthase A [Anabaena variabilis ATCC 29413] gi|75700665|gb|ABA20341.1| tRNA pseudouridine synthase [Anabaena variabilis ATCC 29413] Length = 282 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QV Sbjct: 11 QRVALVVQYLGTNFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P LN+YL I I + V ++HARFSA R Y Y I T Sbjct: 71 AHFDATGLIPPHKWASVLNSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIYTEDR 128 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P +W + D M+ A + L+G+H F + S + + + Sbjct: 129 PNLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVECHRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG G+ T + + + Q R+E AP +GL Sbjct: 189 GPFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|126731534|ref|ZP_01747340.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] gi|126708070|gb|EBA07130.1| tRNA pseudouridine synthase A [Sagittula stellata E-37] Length = 249 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 112/243 (46%), Positives = 154/243 (63%), Gaps = 5/243 (2%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+G + GWQRQ S+Q +IE A+ + + GAGRTD+GVHA QVA D+ Sbjct: 1 MEYDGRPFSGWQRQAAQPSVQQAIEDALARLEPGPFTIAGAGRTDAGVHARGQVAQCDMA 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 ++W P L +ALN +LK ++I + V +HARFSA+ R YL+RI+ R+AP LE+ Sbjct: 61 KDWDPFRLSEALNFHLK-PAPVAIRACARVADDWHARFSAVERRYLFRILMRRAPATLEE 119 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG----NL 183 G+ W + LD MR A HLVGRHDFTTFRS+ CQA SP++T+D ++ + Sbjct: 120 GQVWRVMHPLDVTAMREGAAHLVGRHDFTTFRSVMCQAKSPVKTLDSLEIKAVDGPAGPE 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + ARSFLH Q+RSFVG+L+ VG G W + AL+A+DR CGP+ PP+GLY Sbjct: 180 VWFSLRARSFLHNQVRSFVGTLERVGAGAWAPDRVGAALEARDRAACGPVCPPQGLYLTG 239 Query: 244 VEY 246 V Y Sbjct: 240 VGY 242 >gi|297623065|ref|YP_003704499.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] gi|297164245|gb|ADI13956.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093] Length = 260 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 119/251 (47%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + +E++G+ +FGWQ Q ++QG +E A+ + G H AGRTD+GVH Sbjct: 1 MRRIKLTLEFDGTDFFGWQVQAGAAHPVRTVQGVLEAALATLPGARPKAHAAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL VAH+D + ALNA L + + R Y R+ Sbjct: 61 ALAMVAHYDTDDRIPVAKVPAALNARLPPDVRVLHAEEVPRSFEAQFSCCYRRYLYRMRL 120 Query: 117 -ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +A ALE+ R +P +LD E M+ AA G DF + + + RT+ Sbjct: 121 LRASRAGSALERRRVLFVPGALDLEAMQRAAPRFEGTRDFAALATQESRTTV--RTVYRC 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + G + + + A FL +R+ VG+L VG+GK D+ L A+DR+ GP AP Sbjct: 179 RLGAAGPDLTLDIAADGFLRNMVRAVVGTLLWVGEGKLAPEDVSALLAARDRRRAGPNAP 238 Query: 236 PEGLYFDSVEY 246 P GLYF Y Sbjct: 239 PHGLYFAEAGY 249 >gi|228950979|ref|ZP_04113100.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808706|gb|EEM55204.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 250 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNLFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|42559741|sp|Q7MB17|TRUA_PHOLL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 264 Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+GS Y+GWQRQ+ S+QG +E+A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYDGSRYYGWQRQQEVKSVQGCLEEALSKVADEPISVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +N +L I++ + VD+ FHARFSA R Y Y I + Sbjct: 61 VHFETSVQRKDAAWTMGVNVHL--PPDIAVRWVKTVDEGFHARFSATARRYRYIIFNHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M AAQ ++G +DFT+FR++ CQ+ +P R + H +VN +G Sbjct: 119 RPAVLANGVTHFHYPLDEKRMHQAAQCILGENDFTSFRAVQCQSKTPWRNVMHINVNRYG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +F+H +R+ GSL +G G + + L +DR + A GLY Sbjct: 179 HYVVIDIKANAFVHHMVRNIAGSLMEIGCGNQDINWMAQLLALKDRAKAAATAKAAGLYL 238 Query: 242 DSVEY 246 +V+Y Sbjct: 239 VAVDY 243 >gi|330993399|ref|ZP_08317334.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] gi|329759429|gb|EGG75938.1| tRNA pseudouridine synthase A [Gluconacetobacter sp. SXCC-1] Length = 275 Score = 168 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 115/250 (46%), Positives = 154/250 (61%), Gaps = 6/250 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 R+ +++EY+G G+ GWQRQK SIQG +E A +T G V AGRTD+GVHA Sbjct: 21 RWAVLMEYDGRGFVGWQRQKTTGLLSIQGLLEDAATRLTNGHDVRSITAGRTDAGVHASG 80 Query: 60 QVAHFDLVREWV--PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH D + + LN Y+K + ++ ++ + ++ARFSAI R+Y YRI+ Sbjct: 81 QVAHLDFPADVTLSSATVRDGLNFYMKPHPVVVLMARPVLPQ-WNARFSAISRAYRYRIL 139 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R A ALE G+ W + LD + MR AA HL+GRHDFT+FR+ CQA SP+RT+D DV Sbjct: 140 NRAARPALEDGQVWHVRAPLDVDGMRQAAAHLLGRHDFTSFRATACQARSPVRTLDRLDV 199 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I ARSFLH Q+R+ G+LKLVG+G+W + AL A DR+ GP APPE Sbjct: 200 KREGEYVVIEAAARSFLHHQVRNMAGTLKLVGEGRWEPAQVAHALAACDRRAAGPTAPPE 259 Query: 238 GLYFDSVEYS 247 GL V Y+ Sbjct: 260 GLCLTGVGYA 269 >gi|291544350|emb|CBL17459.1| pseudouridylate synthase I [Ruminococcus sp. 18P13] Length = 273 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++ Y G+ Y G+QRQ N ++Q ++E+A+ V ++G RTD+GVHA + Sbjct: 1 MRTLKCMMAYRGTKYHGFQRQDNAHTVQEAVEQALGSVLNHPATIYGCSRTDTGVHARQY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F R P+ L + +N L D IS+L+ FHAR++ + YLY I + Sbjct: 61 CFSFQTERPIQPLNLVRGVNGRL--PDDISLLSAEDAALSFHARYACRGKEYLYLIHNSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + A + +D ++ A +G HDF +F S Q +S +RTI F V Sbjct: 119 SPNPFLRDLACHHRRPIDPALLQACADRFIGTHDFKSFCSAQAQRTSTVRTIYDFSVEMS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + V FL+ IR VG++ V DGK +DL+ L A+DR+ G A GLY Sbjct: 179 GDSIILLVKGDGFLYNMIRILVGTMLQVNDGKLKLSDLDGILAARDRRCAGKTAMACGLY 238 Query: 241 FDSVEY 246 + V Y Sbjct: 239 LNRVFY 244 >gi|229114082|ref|ZP_04243507.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] gi|228669352|gb|EEL24769.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3] Length = 245 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI ++ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITSVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|47567253|ref|ZP_00237967.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] gi|47556096|gb|EAL14433.1| tRNA pseudouridine synthase A [Bacillus cereus G9241] Length = 245 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 179 EAGCVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 239 YLENVEF 245 >gi|281420165|ref|ZP_06251164.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] gi|281405965|gb|EFB36645.1| tRNA pseudouridine synthase A [Prevotella copri DSM 18205] Length = 247 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G+ Y GWQ Q N +S+Q +++A+ ++ + + V GAGRTD+GVHA Sbjct: 1 MRYFIFFGYDGTNYHGWQIQPNANSVQQELQRALSILLRKEMEVVGAGRTDTGVHARHMA 60 Query: 62 AHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P L LN L I++ + V + HARFSAI R+Y Y I T+ Sbjct: 61 AHFDTDRIPMEPDQLVYRLNRIL--PRDIAVYEVMEVAPEMHARFSAISRTYHYYIHTQ- 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + + L+ E M AAQH + D+ F + I + Sbjct: 118 -KDPFERHYSLQMNYPLNFEKMNEAAQHFLHHEDYAAFCKAGGDNKTTICHVTAARWIQT 176 Query: 181 -GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + A FL +R+ VG+L VG K T L R + G P L Sbjct: 177 SPTTWYFEITANRFLRNMVRAVVGTLIDVGREKITMEQFLDILHNGSRSDAGESMPGNAL 236 Query: 240 YFDSVEY 246 + + V Y Sbjct: 237 FLEDVGY 243 >gi|332665403|ref|YP_004448191.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332334217|gb|AEE51318.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 249 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG+ YFGWQRQ S+Q ++E +I + G + + G GRTD+GVHA + Sbjct: 1 MQRYFIELAYNGTQYFGWQRQPGKISVQQTLEDSINTILGTELEITGCGRTDTGVHARQY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD E+ + LN +L + + + HARF A RSY Y + R+ Sbjct: 61 FAHFDFEGEFPAE-FVRRLNKFLPKDIAVYQIIAVEP--EAHARFDAYERSYEYHLSFRK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + D M+ AA L+ +F F + A + + + + Sbjct: 118 NPFTEHLAYFYPYVQQPDPVLMQDAAAFLLQYQEFEPFCKSNHDAKTMVCKLTRSEWIFD 177 Query: 181 GNLI--EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + FL +R VG VG G+ + +L+ A++ Q R + APPEG Sbjct: 178 LKEQRAVFHITSNRFLRGMVRLIVGMCIGVGTGQISMEELKTAMEQQSRLKKATSAPPEG 237 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 238 LYLGGIKY 245 >gi|111114834|ref|YP_709452.1| tRNA pseudouridine synthase A [Borrelia afzelii PKo] gi|216264050|ref|ZP_03436044.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] gi|122956439|sp|Q0SPF2|TRUA_BORAP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110890108|gb|ABH01276.1| pseudouridylate synthase I [Borrelia afzelii PKo] gi|215980094|gb|EEC20916.1| tRNA pseudouridine synthase A [Borrelia afzelii ACA-1] Length = 246 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 122/246 (49%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y G+Q Q +IQG IEKA+ + + + +H +GRTD GVHA RQ Sbjct: 1 MKKILAEIAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD+ L KALNA L IL L V FH RF+A +R Y Y I+ Sbjct: 61 IITFDININIQLNNLKKALNAILLKPGI-KILKLKHVKNSFHPRFNAQKRKYSYCILNSD 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ N+ A+ L+G HDFTTF I ++ S R I Sbjct: 120 NYYPWESYQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKK 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I ++ SFL +RS +G++ + + + E L++++R AP L+ Sbjct: 180 GKYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALF 239 Query: 241 FDSVEY 246 D V Y Sbjct: 240 LDKVYY 245 >gi|261879379|ref|ZP_06005806.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] gi|270333946|gb|EFA44732.1| tRNA pseudouridine synthase A [Prevotella bergensis DSM 17361] Length = 244 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I ++G+ Y GWQ Q NG S+Q +++ + + + + V GAGRTD+GVHA R Sbjct: 1 MRYFVWISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ RE L LN L IS + V+ + HARFSA +R+Y Y I T++ Sbjct: 61 AHFDIDRELNCEQLAYRLNRIL--PRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQRN 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 E+ + + LD E M AA L+ DF F H + + + Sbjct: 119 --PFERFFSVEMNWQLDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTG 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL +R+ VG+L VG T + ++ R + G PP GL+ Sbjct: 177 PATYYFEISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLF 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LWDIEY 242 >gi|304398239|ref|ZP_07380113.1| tRNA pseudouridine synthase A [Pantoea sp. aB] gi|304354105|gb|EFM18478.1| tRNA pseudouridine synthase A [Pantoea sp. aB] Length = 267 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 67 VHFETTSQRPDGAWTLGVNANL--PPDIAVRWVKAVPDEFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAVLAQGVTHFYHPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYL 244 Query: 242 DSVEY 246 +V+Y Sbjct: 245 VAVDY 249 >gi|229159574|ref|ZP_04287588.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] gi|228623876|gb|EEK80688.1| tRNA pseudouridine synthase A 2 [Bacillus cereus R309803] Length = 250 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A+F + V + K LN YL + ISI N+ V ++FHAR+++ ++YLY+I Sbjct: 66 QIANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHERFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVESMKQAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEGKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|206901950|ref|YP_002250733.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] gi|238057728|sp|B5YDX5|TRUA_DICT6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206741053|gb|ACI20111.1| tRNA pseudouridine synthase A [Dictyoglomus thermophilum H-6-12] Length = 245 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 124/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI + + + Y G ++G+Q+Q ++QG +EK + L+ E + V GAGRTD+GVHAL Q Sbjct: 1 MINWKVELSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQ 60 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + + L K LN L I I + IVD FHAR+SA RR Y+Y I Sbjct: 61 VVNFKTKESKNFSCDKLYKVLNKLL--PGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + W I K LD + + ++A G HDF F I ++ + + F Sbjct: 119 NEEKNLFLRDYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIENYDNTNVEIYESF-WY 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ V A FL +R VGS+ VG K DLEK L+ + + AP G Sbjct: 178 FKEDLLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASG 237 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 238 LYLFKIDY 245 >gi|302338166|ref|YP_003803372.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] gi|301635351|gb|ADK80778.1| tRNA pseudouridine synthase A [Spirochaeta smaragdinae DSM 11293] Length = 247 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 112/243 (46%), Gaps = 3/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 MI+ Y+G + GWQ Q+ ++QG IE A+ + + V V AGRTDSGVHA QV HFD Sbjct: 1 MIVAYDGRKFSGWQVQREDRTVQGVIEAALESMEKQKVRVFAAGRTDSGVHARGQVVHFD 60 Query: 66 LV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 ALNA L + I+ V FHAR+SA RSY Y + Sbjct: 61 TSLSSIEADKFAPALNAIL--PADVRIVGSYAVPDDFHARYSAKARSYRYFLYPGVCVSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L + + + A L+G HDF++F + + S +R I +I Sbjct: 119 LLRPYCYARRSLPSIGALNRAVSPLLGSHDFSSFSASGDPSPSKVRVIYQAVFLQHRGMI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 E R+ +FL +RS VG+ V + + + L +DR G AP GL+F V Sbjct: 179 EFRITGNAFLWRMVRSIVGTALEVASAEEPARAMRLILDEKDRSLAGTTAPARGLFFWRV 238 Query: 245 EYS 247 Y+ Sbjct: 239 HYT 241 >gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] gi|238689303|sp|B2S1K1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH] Length = 245 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+GS Y+G+Q Q +IQG IEKA+ ++ V VH AGRTD GVHA Q Sbjct: 1 MKKILAEIAYDGSLYYGFQIQPTKPTIQGEIEKALEKISKTKVKVHSAGRTDKGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + F + L A+N+ L+ I I+ L V +F RF+A RR Y Y I+ + Sbjct: 61 IISFYIRINIKLKNLKTAINSLLR--KDIRIIKLKYVADEFQPRFNAKRRKYSYYILNNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E +A+ + K L+ + A+ L+G HDFTTF I Q +S ++ I Sbjct: 119 NHYPWEGYQAYYVKKKLNINRLNEMAKMLIGIHDFTTFSCIKDQTNSKLKKIYFARFKKK 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI ++ SFL +RS VG++ + +K L +++RK AP + L+ Sbjct: 179 NKLIIFEIIGSSFLWKMVRSIVGTIIDIEIKNEPVYTFKKILNSKNRKFTRTTAPAKALF 238 Query: 241 FDSVEY 246 D V Y Sbjct: 239 LDKVFY 244 >gi|307297407|ref|ZP_07577213.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] gi|306916667|gb|EFN47049.1| tRNA pseudouridine synthase A [Thermotogales bacterium mesG1.Ag.4.2] Length = 252 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ I+ Y+G+ +FG+Q Q ++QG E+A+ + + GAGRTD+GVH Q Sbjct: 3 MKRFAAIVSYDGTDFFGFQNQPGLRTVQGKFEEALHRIHKFCISSQGAGRTDTGVHGFGQ 62 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V FD + + + ALNA L + + + VD+ F RF+A +R Y Y I T Sbjct: 63 VIAFDSNLDRLEATTMRDALNANL--PSDMYVRKVHEVDENFSPRFAAKKRIYHYYIQTS 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W P SLD ++MR AA +L+G HDF FR+ + + Sbjct: 121 SEPDIFRRRFVWWFPYSLDIKSMRRAAVNLLGEHDFAAFRTGKDDRNPVRTITAIRIIRY 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I IRV SFL +R+ VG+L VG G + + + L + DR APP+GL Sbjct: 181 KPYIILIRVEGISFLKRMVRNIVGTLVKVGTGSVSEESVSEFLSSHDRSTLPGTAPPQGL 240 Query: 240 YFDSVEY 246 F V + Sbjct: 241 VFYKVIF 247 >gi|229042328|ref|ZP_04190078.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] gi|228726987|gb|EEL78194.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH676] Length = 250 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 6 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|227824316|ref|ZP_03989148.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] gi|226904815|gb|EEH90733.1| tRNA pseudouridine synthase A [Acidaminococcus sp. D21] Length = 253 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 85/248 (34%), Positives = 124/248 (50%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + ++ Y+G+ Y G+QRQK+ G +Q +EKA+ E + + AGRTD+GVHAL Sbjct: 1 MKKTIMAVVAYDGTNYQGFQRQKDYGVGVQQVLEKALSTALHEDISIKAAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ P +AL L I+I I FHARF A+ ++Y Y ++ Sbjct: 61 GQVISFETSSPIPPENYRRALQHLL--PPDIAIREAFIKPDGFHARFDALDKTYRYTVLY 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 P + AW + SL M AA LVG HDF++F++ + +SP+RT+ Sbjct: 119 APLPDPCARRYAWEVRSSLTLAAMNEAAALLVGTHDFSSFKNQGSEKTSPVRTLYEAYWT 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + FL+ +R+ VG L VG G+WT D + A+DRK+ G AP G Sbjct: 179 QEKERFTFTIRGDGFLYRMVRNIVGCLVKVGTGEWTVADFAAVMAAKDRKKAGVAAPACG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LSLVHVSY 246 >gi|241765867|ref|ZP_04763802.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] gi|241364216|gb|EER59401.1| tRNA pseudouridine synthase A [Acidovorax delafieldii 2AN] Length = 289 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 126/258 (48%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + YNG Y GWQ Q +G+++Q +E A+ T + V AGRTD+GVH L QV Sbjct: 18 TRVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQV 77 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + NA+L I++ V FHAR SA+ R Y Y ++ Sbjct: 78 VHFDTTLVRPDASWVRGTNAFL--PQDIAVQWARAVPSGFHARASAVARRYAYVLLQSPV 135 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++E GR + +L+ + MR AA L+G HDFT+FR+ CQA SP++T+ D+ Sbjct: 136 RPSVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQRIDITRTP 195 Query: 182 ------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A +FLH IR+ +GSL VG G + + + L A R Sbjct: 196 CPRASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDAHSRDA 255 Query: 230 CGPLAPPEGLYFDSVEYS 247 P P+GLYF Y+ Sbjct: 256 AAPTFSPDGLYFQGPVYA 273 >gi|228919351|ref|ZP_04082720.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840287|gb|EEM85559.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 250 Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|237733260|ref|ZP_04563741.1| tRNA pseudouridine synthase A [Mollicutes bacterium D7] gi|229383641|gb|EEO33732.1| tRNA pseudouridine synthase A [Coprobacillus sp. D7] Length = 245 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 132/246 (53%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T + Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTNE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S ++ IR + + + Sbjct: 119 -YSPFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYDQYGNT-IRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHEVFY 242 >gi|294637213|ref|ZP_06715519.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] gi|291089602|gb|EFE22163.1| tRNA pseudouridine synthase A [Edwardsiella tarda ATCC 23685] Length = 275 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 126/243 (51%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 IALGIEYDGSRYAGWQRQQEVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L I++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHASRQEGAWTMGVNAHL--PKDIAVRWVKAVSADFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF++FR+ CQ+ +P R + H VN +G Sbjct: 135 AVLQSGVTHFYHPLDAERMARAGQALLGENDFSSFRAAQCQSRTPWRNVSHLWVNRYGPY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + L A+DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPEGWIAELLAARDRTLAAATAKAAGLYLVA 254 Query: 244 VEY 246 V+Y Sbjct: 255 VDY 257 >gi|237756326|ref|ZP_04584878.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] gi|237691512|gb|EEP60568.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium yellowstonense SS-5] Length = 243 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 117/245 (47%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQV Sbjct: 4 KNYKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLKEKITLIGAGRTDAGVHALRQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + LNA L ISIL + V F+ARFSA ++Y+Y+I T+ Sbjct: 64 ANFKTNKHKNTKTIYTYLNAKL--PRDISILKVEEVPLSFNARFSAKGKTYIYKINTK-- 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AW K LD M + D ++ I + + G Sbjct: 120 PDPFLYKLAWYYDKKLDLIKMVEGINIIKQYKDLSSLAKAGDYIRKEI-DLRELKLYFDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I + A FL +R VG L +G G + +L+ ++ + APPEGLY Sbjct: 179 KIITIEITASHFLRNMVRRIVGHLVALGRGSLSLEELKDIIEKKSPSHGKYTAPPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 KAVYY 243 >gi|158422420|ref|YP_001523712.1| tRNA pseudouridine synthase A [Azorhizobium caulinodans ORS 571] gi|172048047|sp|A8IQL3|TRUA_AZOC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|158329309|dbj|BAF86794.1| tRNA pseudouridine synthase [Azorhizobium caulinodans ORS 571] Length = 258 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 120/246 (48%), Positives = 165/246 (67%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQ Q ++QG + A+ +GE V GAGRTD+GVHA Q Sbjct: 1 MPRYKLTIEYDGTPFAGWQIQAELPTVQGVLAAAVKGFSGEEAHVAGAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH L R+W P + A+ A+L+ ++++ + V F ARFSA++R YLYRI+ R+ Sbjct: 61 VAHIHLARDWRPDQVRDAMTAHLR-PHPVAVVAVERVADDFDARFSAVKRHYLYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LAL++ RAW +P+ LD M +AAQ L+G+HDFTTFR+ CQA+SP +T+D DV Sbjct: 120 PDLALDRDRAWRVPQKLDASAMHVAAQRLLGKHDFTTFRAAECQAASPEKTLDQLDVMRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VGSL VG+G+W++ DL AL A+DR+ CGP+AP GLY Sbjct: 180 GDDIRIVTSARSFLHHQVRSMVGSLIRVGEGRWSADDLADALAARDRRRCGPMAPACGLY 239 Query: 241 FDSVEY 246 +V Y Sbjct: 240 LAAVSY 245 >gi|332532285|ref|ZP_08408166.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] gi|332038383|gb|EGI74828.1| tRNA pseudouridine synthase A [Pseudoalteromonas haloplanktis ANT/505] Length = 264 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 126/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG Y GWQRQ + +S+Q +EKA+ + V V AGRTD+GVH Q+ Sbjct: 1 MRVALGVEYNGVRYSGWQRQSHVNSVQQEVEKALSRICNHPVEVVCAGRTDAGVHGTGQI 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I+I V FHARFSA R Y Y I Sbjct: 61 IHFETEASRDMVAFTMGMNTLL--PKDIAIRFAQPVAVDFHARFSATARRYRYIIYNSPF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD M+ A Q+L+G HDFT+FR+IHCQA++P RTI H V G Sbjct: 119 RGAVLSEGVTHFHHPLDEVKMQEACQYLIGTHDFTSFRAIHCQANTPTRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I + A +FLH +R+ GSL +G K L++ L ++R + A GLY Sbjct: 179 CYVIIDIKANAFLHHMVRNITGSLMDIGIHKQQPIWLKELLDCKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX] gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX] Length = 296 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 108/248 (43%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-VHGAGRTDSGVHALRQ 60 R + I Y+G+ + GW Q ++QG ++ A+ V + AGRTD+GVHA Q Sbjct: 25 TRLRLDISYDGTDFSGWAEQPGRRTVQGELQAALARVLRIPTPQLTVAGRTDAGVHARGQ 84 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAH D+ + L + + + ++ F ARFSA+ R Y+YR+ Sbjct: 85 VAHVDVPASVWEAEGERLLRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYVYRVSDA 144 Query: 120 QA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + + LD + M AA L+G HDF + AS+ Sbjct: 145 PGGVDPLRRHEVLWHRRPLDVDRMNEAAAALLGEHDFAAYCRKREGASTVRELQRLEWRR 204 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 ++ V A +F H +R+ VG+L VGDG+ + L+A R + PP G Sbjct: 205 ESEHVYAATVQADAFCHNMVRALVGALLAVGDGRRPPEWPAQVLRAGVRDSAVHVVPPHG 264 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 265 LTLEEVRY 272 >gi|270285538|ref|ZP_06194932.1| tRNA pseudouridine synthase A [Chlamydia muridarum Nigg] gi|270289549|ref|ZP_06195851.1| tRNA pseudouridine synthase A [Chlamydia muridarum Weiss] gi|301336935|ref|ZP_07225137.1| tRNA pseudouridine synthase A [Chlamydia muridarum MopnTet14] gi|13431951|sp|Q9PJT0|TRUA_CHLMU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ +E + ++ + V +GRTD+GVHA Sbjct: 1 MTKKIILRIAYQGTAYSGWQYQPNALSIQEVLETLLQKISRTRISVIASGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVPV---ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAHF + K LNA L I I ++ ++ FH+RFSAI + Y Y + Sbjct: 61 QVAHFCCPDHPHFSDPGQIKKMLNALL--PHDIVIRDVIATNEDFHSRFSAITKEYHYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L E+MR AA++LVG HDF +F ++ + SS +RT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRHKLCLESMREAAKYLVGTHDFASFANLGREYSSTVRTLYALD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +L+ + FL+ +R+ VG+L +G GK+ L + L+ +DRK+ P APP Sbjct: 179 LLEQEHLVTVICKGNGFLYKMVRNIVGALLDIGKGKYPPEHLLEMLEKKDRKKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|325660678|ref|ZP_08149308.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] gi|325473039|gb|EGC76247.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 4_1_37FAA] Length = 249 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 126/252 (50%), Gaps = 10/252 (3%) Query: 1 MI-----RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 M+ Y M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+G Sbjct: 1 MMKKIKKNYKMTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSEIEGSPVKISGSGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QVAH L P +L + LN L + I I + V + FH+R+SA+ + Y Y Sbjct: 61 VHAKGQVAHVFLKTNEDPELLRQELNRML--PEDIRICRVESVSQSFHSRYSAVSKVYEY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 RI R + + P LD + MR AA HL G HDF +F + + +RTI Sbjct: 119 RIDQRSRADVFTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSF--TDNKEADSVRTIFS 176 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 D+ + + FL+ +R G+L VG+G T + +A +DR G LA Sbjct: 177 IDMKEENEKLVLAFCGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLA 236 Query: 235 PPEGLYFDSVEY 246 P GL V Y Sbjct: 237 PAHGLCLREVNY 248 >gi|167755943|ref|ZP_02428070.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] gi|167703935|gb|EDS18514.1| hypothetical protein CLORAM_01463 [Clostridium ramosum DSM 1402] Length = 245 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + Y+GS + G+Q Q ++QG I+KA+ + E +++HG+GRTD+ VH +Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD RE +A+N +L + I IL+ VD+ FH+R+SAI++ Y Y + T++ Sbjct: 61 VFHFDTTREMPEAQWKRAINHFL--PNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E MR AA+ +G HDF +F S ++ IR + + + Sbjct: 119 -YSPFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYDQYGNT-IRELYELSITNE 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I+ +V F +R VG L VG + T L++ L ++ ++C A P+GLY Sbjct: 177 KGIIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LHEVFY 242 >gi|332162419|ref|YP_004298996.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666649|gb|ADZ43293.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861403|emb|CBX71633.1| tRNA pseudouridine synthase A [Yersinia enterocolitica W22703] Length = 280 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEY 246 SV+Y Sbjct: 258 SVDY 261 >gi|124008085|ref|ZP_01692784.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] gi|123986499|gb|EAY26305.1| tRNA pseudouridine synthase A [Microscilla marina ATCC 23134] Length = 248 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ QKN S+Q I+ A+ ++ + + G+GRTD+GVHA++Q Sbjct: 1 MRYFLELAYSGTQYHGWQIQKNAHSVQAEIQNALSVLLRQPTDILGSGRTDAGVHAIQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + + K +N L + ISI + V ++ H RF A +R Y+YRI + Sbjct: 61 AHFDTEQTLDGEVFAKKMNGIL--PEDISIKRVINVHEEAHTRFDATQRHYMYRINQEKT 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHFDV 177 P +D N AAQ ++ DF F +H + + + Sbjct: 119 PFLRGVSYYNFHRFDIDLMN--KAAQIMLKHEDFQCFSKVHTDVNHYLCNIQQAYWQKET 176 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + NL+ + A FL +R+ G++ VG GK T + E+ + +DRK+ G P + Sbjct: 177 SYNVNLLVFYIQANRFLRGMVRAITGTMLNVGSGKITLEEFEQIILNKDRKQAGWSVPAQ 236 Query: 238 GLYFDSVEY 246 GL+ VEY Sbjct: 237 GLFLAKVEY 245 >gi|291515704|emb|CBK64914.1| pseudouridylate synthase I [Alistipes shahii WAL 8301] Length = 259 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 115/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E V + GAGRTD+GV+A V Sbjct: 1 MRYFLELRYNGAAYCGWQRQPDQPSVQQTLERALATLLREPVALTGAGRTDTGVNAAYYV 60 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD R P LN L I++ +++ V + HARF A R YR Sbjct: 61 AHFDCERPVADPAQTVYKLNFLL--PGDIAVGSMTPVAEDAHARFHA--REREYRYFIEP 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 + W LD M AA L DFT+F ++ + R + Sbjct: 117 RKNPFTRHETWQYYVPLDVGRMNEAAAMLTAYDDFTSFAKLNSNNKTNICRVKEAVWTID 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +RS VG+L VG G++T ++++D AP +GL Sbjct: 177 SRGTMCFTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFRSIVESRDLSRSSAGAPAQGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLSDVVY 243 >gi|228956904|ref|ZP_04118685.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802747|gb|EEM49583.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 250 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 138/247 (55%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G + GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 6 MHNYKLTIQYDGVRFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + DV Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|323465853|gb|ADX69540.1| tRNA pseudouridine synthase A [Lactobacillus helveticus H10] Length = 262 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ ++ G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMSKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSM--MPTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|288817539|ref|YP_003431886.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|288786938|dbj|BAI68685.1| pseudouridylate synthase [Hydrogenobacter thermophilus TK-6] gi|308751142|gb|ADO44625.1| tRNA pseudouridine synthase A [Hydrogenobacter thermophilus TK-6] Length = 241 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +++ Y G+ + GWQ Q N ++QG I++++ V E + + G RTD+GVHA Sbjct: 1 MPNYVLLLSYVGTNFHGWQVQPNLRTVQGVIKESLEKVFREDIKLVGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F +E P L KALN+ L I + + F+AR+S + Y+YR++ Sbjct: 61 VANFYAKKEMEPYKLLKALNSLLPEDVGIKRVWVQE---GFNARYSVRGKVYVYRVLNSF 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A + AW +P+ LD M+ A + L GR DF+ F + + + ++ ++ Sbjct: 118 SRDAFIEPFAWRVPQKLDLSKMQKACELLAGRRDFSAFAKKEEEDKNTVIDLEEVRLSKV 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +LIEI ARSFL +R VG + +G G+ + LE+ L +RK C A +GL Sbjct: 178 EDLIEISFRARSFLRYMVRRMVGCMVQIGLGRINLSHLEEYLS--NRKTCPYTAKAKGLT 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|123441645|ref|YP_001005630.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088606|emb|CAL11401.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 280 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKDAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMAQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEY 246 SV+Y Sbjct: 258 SVDY 261 >gi|288574694|ref|ZP_06393051.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570435|gb|EFC91992.1| tRNA pseudouridine synthase A [Dethiosulfovibrio peptidovorans DSM 11002] Length = 247 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 1/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + + Y G+ + GWQ Q + ++Q +E+A+ ++ G V V GAGRTDSGVHA QV Sbjct: 1 MKYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F+L + W P L A+NA L ++ + D R + R + Sbjct: 61 ASFELSKTWDPYRLTLAVNANLPEHVSVMRASAVPDDFDAR-RSALWREYAYFVWHGPSC 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + W D + + + LVG HDF F + + +RT+ G Sbjct: 120 FPHVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAVRTLFSVRHIRRG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L R+ + FL +R +G++ V GK E+ L R + AP GL+F Sbjct: 180 RLSIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASGLFF 239 Query: 242 DSVEY 246 V Y Sbjct: 240 WRVGY 244 >gi|308187626|ref|YP_003931757.1| pseudouridylate synthase I [Pantoea vagans C9-1] gi|308058136|gb|ADO10308.1| pseudouridylate synthase I [Pantoea vagans C9-1] Length = 267 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 130/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+GS Y+GWQRQ S+Q +E+A+ V V + AGRTD+GVH QV Sbjct: 7 QKLALGIEYDGSRYYGWQRQNEVRSVQEKVERALSKVADHPVSIFCAGRTDAGVHGTGQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ + +NA L I++ + V +FHARFSA R Y Y I ++ Sbjct: 67 VHFETTSQRPDGAWTLGVNANL--PADIAVRWVKAVPDEFHARFSATARRYRYLIYNQRL 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M+ A Q L+G +DFT+FR++ CQ+ +P R + H +V G Sbjct: 125 RPAVLAQGVTHFYHPLDAEKMQRAGQCLLGENDFTSFRAVQCQSRTPWRNVIHLNVTRQG 184 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + A +F+H +R+ VGSL +G G + + L A+DR A EGLY Sbjct: 185 PYVIVDIKANAFVHHMVRNIVGSLMEIGCGNKPESWMATLLAAKDRTLAAATARAEGLYL 244 Query: 242 DSVEY 246 +V+Y Sbjct: 245 VAVDY 249 >gi|193214164|ref|YP_001995363.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] gi|193087641|gb|ACF12916.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC 35110] Length = 265 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M++EY+G+ + GWQRQ + +IQG IE + V E V + AGRTD+GVHA Sbjct: 19 RNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGVHAK 78 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA+F L ALN L I I+ + + F+ARF A R+Y Y ++T Sbjct: 79 AQVANFLTENSLSISRLKHALNGLL--PSQIKIIEIEDAPENFNARFDAKSRTYRYFLLT 136 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + L + D M Q ++G+HDFT+F Q + I TI+ Sbjct: 137 RYSA--LLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARWY 194 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + + + A FLH+ +R VG++ VG+G+ + D + A+D A P+G Sbjct: 195 QRKNGLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQG 254 Query: 239 LYFDSVEY 246 L+ VEY Sbjct: 255 LFLWHVEY 262 >gi|229101230|ref|ZP_04231994.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] gi|228682198|gb|EEL36311.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28] Length = 245 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ Y GWQR N ++IQG IE I + G+ + + G RTD+GVHAL Sbjct: 1 MHNYKLTIQYDGARYKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFKSDEKLVEHKVKKYLNQYL--PNDISITNVEEVPDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ E+M+ AA+HLVG HDFT F + + S +R + +V+ Sbjct: 119 EHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSHDFTAFSNAKSKKKSMVREVYMLEVSE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+ + R + LA GL Sbjct: 179 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDADAIPNILEEKQRNQINCLAEASGL 238 Query: 240 YFDSVEY 246 Y +S+E+ Sbjct: 239 YLESIEF 245 >gi|307128564|ref|YP_003880594.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] gi|306483026|gb|ADM89896.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri CARI] Length = 252 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ Q S+Q +IEK + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGALFYGWQIQNKNISVQETIEKCLSFLLKKNIKIIGAGRTDAGVHAIQMF 60 Query: 62 AHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHFD + + + LN +L ++ I + HARF+ + R Y YRI Sbjct: 61 AHFDFNQNLLLIDKNIKFKLNYFLPLNIKIKNIFSVKNK--IHARFNVLSRVYEYRIFLE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P L+ WL K + + + A+ L D+++F + I I + Sbjct: 119 KNPFYLDTSWQWLYKKKIKIKILNKGAKLLKKYKDYSSFCKKKSNNKTYICHIFYAKWIL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +RS VG+L +G K T D + ++A++R G AP +GL Sbjct: 179 KKKKLFFYIEANRFLRNMVRSIVGTLIELGIKKITLKDFIQIIEAKNRHLAGISAPAKGL 238 Query: 240 YFDSVEY 246 + + Y Sbjct: 239 FLIKINY 245 >gi|186684484|ref|YP_001867680.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] gi|186466936|gb|ACC82737.1| tRNA pseudouridine synthase A [Nostoc punctiforme PCC 73102] Length = 282 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 117/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QV Sbjct: 11 HRVALVIQYLGTHFHGWQRQKQHRTVQEEIETAIATILGHHVTLHGAGRTDSGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ P LN+YL I I + VD ++HARFSA R Y Y I T Sbjct: 71 AHFEATGLIPPHKWATILNSYL--PPDILIRASASVDNRWHARFSAAYRRYRYTIYTEDR 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 LD ++ A + L+G+H F + S + + Sbjct: 129 LNLFVRPFSWHYYYAPLDESLIQAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAVECRRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG G+ T + + + Q R+E APP+GL Sbjct: 189 GPFIHIEIQADGFLYGMVRLLVGMLVEVGSGQRTLSSFTELWKEQRREEVKYAAPPQGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|326316049|ref|YP_004233721.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372885|gb|ADX45154.1| tRNA pseudouridine synthase A [Acidovorax avenae subsp. avenae ATCC 19860] Length = 278 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 86/263 (32%), Positives = 128/263 (48%), Gaps = 20/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + +P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLDRMPFSWVRGTNTFL--PPDIAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ Sbjct: 119 RPSVESGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 180 ----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQASGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+ R P P+GLYF Y Sbjct: 239 ARSRDAAAPTFSPDGLYFLGPLY 261 >gi|291557656|emb|CBL34773.1| pseudouridylate synthase I [Eubacterium siraeum V10Sc8a] Length = 243 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 119/241 (49%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 + YNG+ Y G+QRQ N +SIQ ++E+ + + E + ++G RTD+GVHA V + Sbjct: 1 MAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFNVKTT 60 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 K NA L I+ L+ + FHARF + + Y+YRI T Sbjct: 61 CPIPCEGFIKGGNALL--PQDIAFLSCEDMPDSFHARFDSKGKEYIYRIYTGDVRDVFSA 118 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGNLIE 185 A P D E MR AA+ +VG HDF +F S +RT+ DV G+ +E Sbjct: 119 DTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLSTVRTVYSIDVEQTGDFVE 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I+V FLH +R VG+L + +GK T D+ AL DR+ G P GLY + V Sbjct: 179 IKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVSPCGLYLNKVF 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|163791438|ref|ZP_02185847.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] gi|159873302|gb|EDP67397.1| tRNA pseudouridine synthase A [Carnobacterium sp. AT7] Length = 246 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M M +EY+G+ Y GWQR + +IQG IE I +TG + G+GRTD+G HA Sbjct: 1 MRNIKMTVEYDGARYLGWQRLTDSDKTIQGKIENTITAMTGTKTEIVGSGRTDAGAHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + LN YL I + L V ++FHAR++A + Y Y + Sbjct: 61 QVANFKTESTMELQAMLDHLNRYL--PRDIVVKKLEEVPERFHARYNASGKKYSYYVWNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P E+ ++ LD + M A LVG+HDF F S+ S +RTI+ ++ Sbjct: 119 SVPSVFERNFSYEYAGDLDIDKMNKACDKLVGKHDFIGFSSLKKSKKSTVRTINEIKIHK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + FL+ IR +G++ +G G ++ ++ R E G P +GL Sbjct: 179 EGDLLHFTFIGEGFLYKMIRIIMGTILEIGAGTTELESIDAIFKSGIRSEAGMTVPSQGL 238 Query: 240 YFDSVEY 246 + D V Y Sbjct: 239 FLDEVYY 245 >gi|269139760|ref|YP_003296461.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|267985421|gb|ACY85250.1| tRNA pseudouridine synthase A [Edwardsiella tarda EIB202] gi|304559626|gb|ADM42290.1| tRNA pseudouridine synthase A [Edwardsiella tarda FL6-60] Length = 275 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 125/243 (51%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 LALGIEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L +++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHALRQEGAWTMGVNAHL--PKDVAVRWVKSVSPDFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF+ FR+ CQ+ +P R + H VN +G Sbjct: 135 AVLQSGVTHCYLPLDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVNRYGPY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + + L +DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAELLAGRDRTLAAATAKAAGLYLVA 254 Query: 244 VEY 246 V+Y Sbjct: 255 VDY 257 >gi|288928084|ref|ZP_06421931.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] gi|288330918|gb|EFC69502.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 317 str. F0108] Length = 244 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA V Sbjct: 3 QRYFIYFSYDGTSYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ V L LN L I+I + VD HARFSA +R+Y Y I + Sbjct: 63 AHFDVDTPIDAVQLTYKLNRVL--PFDITINAIKAVDADMHARFSATKRTYHYYIHLDRD 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 P ++ + ++ D + M AA+ L+ DF F H A + + + Sbjct: 121 PFCR--AYSYALHQAPDFQLMNEAAEILLSHKDFGAFCKSHSDAKTTLCEVYEARWIKLS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +R+ A FL +R+ VG+L VG K T L ++ R++ G P L+ Sbjct: 179 DTKWHLRISANRFLRNMVRAIVGTLLDVGWHKITLEQFVDILHSKSRQQAGESVPGHALF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LEDVQY 244 >gi|332522319|ref|ZP_08398571.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] gi|332313583|gb|EGJ26568.1| tRNA pseudouridine synthase A [Streptococcus porcinus str. Jelinkova 176] Length = 249 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALR 59 MIRY +I Y+GS + G+QRQ +IQ IEK + + + + GAGRTD+GVHA Sbjct: 1 MIRYKAVISYDGSQFSGFQRQTKARTIQEEIEKTLMRLNKGKFIAIQGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + + I ++++ V FHAR+S ++Y + + Sbjct: 61 QVIHFDLAERRDLEKLRFALDT--QTPEDIDVISVEEVSNNFHARYSKHLKTYEFIVDVG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + A P LD + +A + LVG HDFT F + + +RT+ D + Sbjct: 119 RPKNPMMRKYATHYPYPLDFSLIELAIKDLVGTHDFTGFTAAGTSVENKVRTLYQADCSF 178 Query: 180 --FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + FL+ Q+R+ VG+L +G+ + + L+ ++R+ GP Sbjct: 179 DSHRQCLIFTFTGNGFLYKQVRNMVGTLLKIGNQRMPVEQVRIILEQKNRQLAGPTIAGN 238 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 239 GLYLKEIIY 247 >gi|318606505|emb|CBY28003.1| tRNA pseudouridine synthase A [Yersinia enterocolitica subsp. palearctica Y11] Length = 280 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 132/244 (54%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 20 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVLCAGRTDAGVHATGQVV 79 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF E +N++L I++ + VD FHARFSA R Y Y I + Sbjct: 80 HFITTAERKNAAWTMGVNSHL--PPDIAVRWVKTVDDGFHARFSATARRYRYIIFNHRYR 137 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G HDFT+FR+I CQ+ +P R + H V G Sbjct: 138 PAVLAQGVTHCYMPLDAEKMEQAAQCLLGEHDFTSFRAIQCQSRTPWRNVKHVKVTRHGA 197 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G + T + + L +DR A EGLY Sbjct: 198 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQSVTWMAELLALKDRARAAATAKAEGLYLV 257 Query: 243 SVEY 246 SV+Y Sbjct: 258 SVDY 261 >gi|120609904|ref|YP_969582.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] gi|166228672|sp|A1TLH0|TRUA_ACIAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120588368|gb|ABM31808.1| tRNA pseudouridine synthase A [Acidovorax citrulli AAC00-1] Length = 278 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 87/263 (33%), Positives = 127/263 (48%), Gaps = 20/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNGS Y GWQ Q G+++Q +E A+ V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGSAYRGWQSQPGGATVQDRLEAALARFATHEVSTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E P + N +L I++ V + FH+R SA R Y Y ++ Sbjct: 61 VHFDTPLERTPFSWVRGTNTFL--PPDIAVQWARPVPEAFHSRASATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-- 179 ++E GR + +LD + MR AA+HL+G HDFT+FR+ CQA SP++T+ ++ Sbjct: 119 RPSVEAGRVGWVFHALDGDAMRAAARHLLGEHDFTSFRASACQAKSPVKTLRRIEITQRG 178 Query: 180 ----------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FLH +R+ +G L VG G+ + + LQ Sbjct: 179 TGGVPAGQAPGDRGDVPTCYWRFEFEGNAFLHHMVRNIMGCLVAVGQGQHPADWMHAVLQ 238 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 A+ R P P+GLYF Y Sbjct: 239 ARSRDAAAPTFSPDGLYFLGPLY 261 >gi|108804942|ref|YP_644879.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] gi|108766185|gb|ABG05067.1| tRNA pseudouridine synthase A [Rubrobacter xylanophilus DSM 9941] Length = 257 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++EY+G+G+ GW RQ +++G + +A+ V V + AGRTD+GVHA QV Sbjct: 1 MRLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD P L +A L + + AR A RSY YRI+ Sbjct: 61 VSFDARDGTDPGTLAYKASAVLSEDVALRRCVAAPPGFD--ARRDAASRSYEYRIVNAPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + RA + LD + AA+ ++G HDF F R + G Sbjct: 119 RSPLRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ R+ A +FL+ +R+ VG++ V G+ E+ L R E GP AP GL Sbjct: 179 DLLVYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTL 238 Query: 242 DSVEYS 247 V Y+ Sbjct: 239 VRVRYA 244 >gi|319792244|ref|YP_004153884.1| tRNA pseudouridine synthase a [Variovorax paradoxus EPS] gi|315594707|gb|ADU35773.1| tRNA pseudouridine synthase A [Variovorax paradoxus EPS] Length = 273 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 9/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHAL 58 +R + I YNG Y GWQ Q++G ++Q +E A+ + + AGRTD+GVHAL Sbjct: 1 MRLALGIRYNGQAYEGWQSQRSGRTVQDKLEAALAKFAADPSGRIGTLCAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD E P + N +L D I++ V +FH R SA+ R YLY + Sbjct: 61 MQVVHFDTEIEREPFSWMRGTNRFL--PDDIAVQWAQPVPDEFHCRASALARRYLYVLSQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +L+ GR LD + MR AA L+G HDF++FR+ CQA SP++ + ++ Sbjct: 119 SPVRPSLDSGRVGWSMHPLDGDAMRKAAAVLIGTHDFSSFRASACQAKSPVKNLRRIEIT 178 Query: 179 S----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 A +FLH IR+ +G L +G G + + L+A+ RK P Sbjct: 179 RVGDGERCRWHFEFEADAFLHHMIRNLMGCLVRIGRGDERPEWIAEVLEARSRKVAAPTF 238 Query: 235 PPEGLYFDSVEY 246 +GLYF Y Sbjct: 239 SADGLYFLGPLY 250 >gi|300770580|ref|ZP_07080459.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] gi|300763056|gb|EFK59873.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33861] Length = 257 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 110/249 (44%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 6 KRFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLF 65 Query: 62 AHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 HFD + E P +LNA L I++ L VD Q HARF A RSY Y + Sbjct: 66 VHFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVDDQAHARFDATSRSYEYHLH- 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +WL D M A Q+L+GR DF F + Q + I + Sbjct: 123 -FKKDPFLINASWLTRDIPDVVKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWL 181 Query: 179 SFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + A FL +R+ VG+L +G +++ + ++ R + G P Sbjct: 182 WNTDDHLVFHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAH 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTEVVY 250 >gi|325920196|ref|ZP_08182154.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] gi|325549321|gb|EGD20217.1| pseudouridylate synthase I [Xanthomonas gardneri ATCC 19865] Length = 257 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G ++Q ++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPTVQARLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARRDPRSWMLGTTARLPPSIAVRWCVPA--AADFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + +SLD + M AAQ L+G +DF FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRSLDADAMHTAAQALLGENDFNAFRSVQCQAPHARRNLQAISVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP APP+G Sbjct: 178 RIGEVVEMQVQANAFLHHMVRNIVGSLILVGTGEQPVDWIATLLAGRDRSVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 265 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + + Y G+ Y G+Q+Q+ S+I G++E+ + + ++ GA RTD GVHAL Sbjct: 10 QRIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRTDQGVHALGN 69 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + FD + + +ALN+YL + I ++ V + FH RF+ R++Y Y I + Sbjct: 70 LLSFDTEGKVSGEQILRALNSYL--PEDIRVMEAYSVQQDFHPRFTPHRKAYRYSICRSK 127 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----SSPIRTIDHFD 176 L + A+ LDC + + L G HDF +F + Q+ S +R I F Sbjct: 128 VENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSVREIYRFS 187 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+ + V FL+ IR G+L +G G+ + + LE+ L+ +DR GP AP Sbjct: 188 MEEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTLAGPTAPA 247 Query: 237 EGLYFDSVEY 246 +GL +++Y Sbjct: 248 KGLCLMNLDY 257 >gi|32491058|ref|NP_871312.1| hypothetical protein WGLp309 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|31340463|sp|Q8D2P5|TRUA_WIGBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|25166265|dbj|BAC24455.1| truA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 264 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y G+ Y GWQ QKN SIQ +E A+F +GE + ++ AGRTD+ VHAL Q Sbjct: 1 MKKLAAGISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF + +N+YL ISI+ + V FHAR+SAI + YLY I Sbjct: 61 VVHFYTDIKRSYRQWILGVNSYL--PYDISIMWVIKVHNNFHARYSAIAKKYLYLIHNNI 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + + SL+ +M+ AAQ L+G+HDF++F+ CQ+ + R I + +N + Sbjct: 119 SRSGIFRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKY 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + A SFL+ +R+ +G+L +G GK + + + L ++ K A P+GLY Sbjct: 179 KEYIFVEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLY 238 Query: 241 FDSVEY 246 +V Y Sbjct: 239 LSNVYY 244 >gi|284009291|emb|CBA76427.1| tRNA pseudouridine synthase A [Arsenophonus nasoniae] Length = 270 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 133/246 (54%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + IEY+GS Y+GWQRQ+ SIQ +E A+ V E + V AGRTD+GVHA Q Sbjct: 9 MFKIALGIEYDGSHYYGWQRQQQVKSIQACVESALTKVAHESIQVCCAGRTDAGVHATGQ 68 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +N++L I++ V+ FHARFSA R Y Y I + Sbjct: 69 VIHFETSVIRKDSAWTMGVNSHL--PADIAVRWSKDVEPDFHARFSATARRYRYIIFNHR 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ LD E M IAAQ LVG DFT+FR+I CQ+ SP R I H VN + Sbjct: 127 YRPAILAAGVTHYHAPLDAEKMHIAAQALVGEQDFTSFRAIQCQSKSPWRNIKHVHVNRY 186 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I + + A +F+H +R+ VGSL +G G + + L +DR + A EGLY Sbjct: 187 GDYIVVDIKANAFVHHMVRNIVGSLLAIGCGVQDINWIAELLALKDRTKAAATAKAEGLY 246 Query: 241 FDSVEY 246 +V+Y Sbjct: 247 LVAVDY 252 >gi|327404294|ref|YP_004345132.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] gi|327319802|gb|AEA44294.1| tRNA pseudouridine synthase A [Fluviicola taffensis DSM 16823] Length = 256 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 127/249 (51%), Gaps = 8/249 (3%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 M RY + + Y G+ Y GWQ Q N SSIQ IE+ + + G + V G GRTD+GVHA Sbjct: 1 MTFRYALELAYRGTNYHGWQIQPNASSIQEEIERRLTQLNGNLPISVVGCGRTDTGVHAT 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V HFD +E L LN L + IS+ + +V ++FHARFS R+Y Y I Sbjct: 61 YYVLHFDSQKELDTEQLVFKLNKML--PEDISLFSAQLVSEEFHARFSPTTRTYHYFIHQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ P L+ R I +D E M AA+ L+G DFT+F +H + I T+ N Sbjct: 119 KKNPFLLDSHR---IVSEIDFEAMNRAARLLLGTQDFTSFSKLHTDVKTNICTVSEAKWN 175 Query: 179 SF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + A FL +R+ VG+L VG G D+ K + +DR E P + Sbjct: 176 QVSESEWYFEIKADRFLRNMVRAVVGTLLEVGYGNLGENDITKIVALKDRGEAKLSVPAK 235 Query: 238 GLYFDSVEY 246 GL+ ++EY Sbjct: 236 GLFLVNIEY 244 >gi|260911484|ref|ZP_05918073.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] gi|260634413|gb|EEX52514.1| tRNA pseudouridine synthase A [Prevotella sp. oral taxon 472 str. F0295] Length = 244 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y+G+ Y GWQ Q N +S+Q +++A+ L+ V + GAGRTD+GVHA V Sbjct: 3 QRYFIYFSYDGTAYHGWQIQPNANSVQAEMQRAMSLLLRHPVELVGAGRTDTGVHARTMV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V L LN L I+I + +D HARFSA +R+Y Y + + Sbjct: 63 AHFDEEEPIDTVQLTYKLNRVL--PFDITINQIKPIDGGLHARFSATKRTYHYYVHLDRD 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 P ++ + + D + M AAQ L+ DF F H A + + + Sbjct: 121 PFCR--AYSYALHQVPDFQLMNDAAQILLSHKDFGAFCKSHSDAKTTLCDVYEARWIRLS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 R+ A FL +R+ VG+L VG K + L ++ R++ G P L+ Sbjct: 179 NTKWHFRISANRFLRNMVRAIVGTLLDVGWHKVSLEQFVDILHSKSRQQAGESVPGHALF 238 Query: 241 FDSVEY 246 + V+Y Sbjct: 239 LEDVQY 244 >gi|296136763|ref|YP_003644005.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] gi|295796885|gb|ADG31675.1| tRNA pseudouridine synthase A [Thiomonas intermedia K12] Length = 257 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 1/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERAFAQFLGVPTRTICAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P + +NA+L + + + + F AR SA +R Y Y + AL Sbjct: 61 TPLQREPSSWVRGVNAFLPRDMAVQ-WARTDLPQTFDARRSAYQRRYRYVLRNHPVRPAL 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + RA + LD + +R AAQ L+G HDF+ FRS CQA SP++T+ ++ +G+ + Sbjct: 120 DHARAGWTHRPLDLDLLRAAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARYGHTLV 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF + Sbjct: 180 FDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGPD 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1] Length = 275 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 87/268 (32%), Positives = 140/268 (52%), Gaps = 24/268 (8%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R ++++Y+GS Y GWQ+Q N +IQG +E + + GE V +HG+GRTD+GVHAL Sbjct: 1 MYRNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPV--------------------ILCKALNAYLKISDTISILNLSIVD 98 QVA+F L + + LN YL + I++++ V Sbjct: 61 GQVANFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYL--PEDIAVISAMEVP 118 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 ++FH+R +A+ ++YLY+I T E+ + + + LD M+ AA+ L+G HDF F Sbjct: 119 ERFHSRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAF 178 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 S S +R + +++ G+ + + FL+ +R G+L +G + T + Sbjct: 179 SSAKRMKKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSV 238 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSVEY 246 KAL++QDR+ G AP EGL SV Y Sbjct: 239 RKALESQDRENAGFTAPAEGLLLKSVRY 266 >gi|261749109|ref|YP_003256794.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497201|gb|ACX83651.1| putative tRNA pseudouridine synthase A [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 247 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 121/246 (49%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG Y GWQ Q +S++G +E + + + + GAGRTD GVHA + Sbjct: 1 MRFFIELSYNGKSYHGWQIQSEVNSVEGQLEYCLSKLLNTSINIVGAGRTDRGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD E + K LN +L +I + N+ V K HARF+A+RR+Y Y + + + Sbjct: 61 AHFDFE-EKISNNFVKRLNLFL--PKSIYVSNIFPVKKHIHARFNALRRTYKYYLKSEKN 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + +W LD + M +A+Q L+ DF++F + I I H D + Sbjct: 118 --PFFQDFSWHCFYPLDIQRMNLASQILMKYKDFSSFCKKRKDKKNNICDIYHADWSRNK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLY 240 + A FL +RS +G+L VG GK + + ++ ++ C P P GL+ Sbjct: 176 IHFCFTIEANRFLRNMVRSIIGTLIDVGRGKISINQFIEIIELKNPNTCSSPSVPACGLF 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LTKILY 241 >gi|282899978|ref|ZP_06307939.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] gi|281195248|gb|EFA70184.1| tRNA pseudouridine synthase [Cylindrospermopsis raciborskii CS-505] Length = 292 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 117/246 (47%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIETAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA R Y Y I T P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSATYRRYRYTIYTEALP 130 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L+ + M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEKLMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECGRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V YS Sbjct: 251 LRVGYS 256 >gi|317403279|gb|EFV83796.1| pseudouridylate synthase I [Achromobacter xylosoxidans C54] Length = 268 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 85/243 (34%), Positives = 131/243 (53%), Gaps = 4/243 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALRQVAH 63 M + Y+GS + GWQ Q + ++Q ++E A+ G V AGRTD+GVH QV H Sbjct: 1 MGLAYDGSAWQGWQTQPHRQTVQDTLEAALAQFCGVTDAVPTICAGRTDTGVHGAMQVIH 60 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + + +NA+L +IS+ V FHARFSA R+Y+Y + + Sbjct: 61 LDTTLDRRMESWVRGVNAFL--PSSISVQWAKAVPDAFHARFSARARTYVYLLWRGRVRP 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 AL GRA + LD MR AA L+G HDF++FRS CQA P+R + D++ G Sbjct: 119 ALWAGRAGWCYQPLDVGAMRAAANALLGEHDFSSFRSSQCQAKHPVRIMHRLDIDERGPF 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A +FLH +R+ +G+L +G G+ + + + L +DR+ P P+GLY + Sbjct: 179 LVFTLRANAFLHHMVRNIMGALLQIGQGRESVDWMAQLLSWRDRRRGAPTFSPDGLYLSA 238 Query: 244 VEY 246 ++Y Sbjct: 239 IDY 241 >gi|161506903|ref|YP_001576857.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260102386|ref|ZP_05752623.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] gi|172048171|sp|A8YTB0|TRUA_LACH4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160347892|gb|ABX26566.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DPC 4571] gi|260083830|gb|EEW67950.1| tRNA pseudouridine synthase A [Lactobacillus helveticus DSM 20075] Length = 263 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + ALN+ + I N IV++ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSM--MPTDIIFNNCEIVNENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ +LD M+ AA+ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFSYALDVGKMQEAAKDLLGKHDFTSFAASGGQIEDKVRTIYYVNIAK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNGRRPVHDLKRVIAAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|91789465|ref|YP_550417.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] gi|123059533|sp|Q126M3|TRUA_POLSJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91698690|gb|ABE45519.1| tRNA pseudouridine synthase A [Polaromonas sp. JS666] Length = 264 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 124/249 (49%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGNTVQDKLESALARFAAQPVRTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD V + NA+L I++ V FH R SAI R Y Y ++ Sbjct: 61 VHFDTVLHRDMGSWVRGTNAFL--PSDIAVQWAREVPDTFHCRGSAIARRYAYVVLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 ++E GR + + LD MR A HLVG HDF++FR+ CQA SP++TI+ +++ Sbjct: 119 RPSVEAGRVGWVYRPLDGAAMRQAITHLVGEHDFSSFRAAQCQAKSPVKTINRIEISERA 178 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 A +FLH IR+ +G L +G G L + A+ R P P Sbjct: 179 GTGSKYWHFEFEANAFLHHMIRNIMGCLVAIGQGSHEPGWLLDVMAARSRDAAAPTFSPN 238 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 239 GLYFLGPVY 247 >gi|332529464|ref|ZP_08405423.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] gi|332041110|gb|EGI77477.1| tRNA pseudouridine synthase A [Hylemonella gracilis ATCC 19624] Length = 270 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 12/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ Y GWQ Q +G ++Q +E A+ E + + AGRTD+GVH L QV Sbjct: 1 MRVALGLSYDGAAYDGWQSQPSGRTVQDRLEHALGRFANERITTNCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V +FH+R SA R Y Y ++ Sbjct: 61 VHFDTQAQRTPYAWVRGTNTHL--PPDIAVQWAHPVPVEFHSRASATSRRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 ++E R + + LD + M+ A HL+G DFT+FR+ CQA SPI+ + +++ Sbjct: 119 RPSVEARRVGWVFQPLDLDAMQAALPHLLGERDFTSFRAAACQALSPIKNLMRVEISRRG 178 Query: 181 ---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 A +FLH IR+ +G L ++G GK + + + A+ R Sbjct: 179 TRAGAEAPETCYWRFEFEASAFLHHMIRNIMGCLIVIGQGKKPPEWMAEVVAARSRDAAA 238 Query: 232 PLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 PTFMPDGLYFLGPRY 253 >gi|332653968|ref|ZP_08419712.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] gi|332517054|gb|EGJ46659.1| tRNA pseudouridine synthase A [Ruminococcaceae bacterium D16] Length = 250 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + YNG+ Y GWQ QKN S+ ++EKA+ V V GAGRTD+GVHA + Sbjct: 3 RNIALKLMYNGTAYHGWQVQKNAISVAETLEKALSTVVCHPVKCTGAGRTDAGVHAEVYI 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + A+N L I ++ + V +F+A S R+ Y YRI + Sbjct: 63 ANFRTTSTIPCDRIPLAVNTRL--PRDIVVVKATEVPMEFNAIGSCHRKEYTYRIYNSRL 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 RAW PK LD + M+ AA VG HDF RS+ + + +RT+ +FDV Sbjct: 121 GNPFYVDRAWFYPKYLDEKIMQQAADQFVGTHDFRAVRSVGTETRTTVRTVYYFDVTRHD 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LIE +V A FL+ +R+ G++ +GK + D+ L++ +R GP PP GLY Sbjct: 181 QLIECKVCANGFLYNMVRAMTGTIVYAAEGKLSPQDIPAILESGNRTLAGPTVPPGGLYM 240 Query: 242 DSVEY 246 + Y Sbjct: 241 TKLWY 245 >gi|212550510|ref|YP_002308827.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|229557952|sp|B6YQE4|TRUA_AZOPC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212548748|dbj|BAG83416.1| tRNA pseudouridine synthase A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 249 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 115/246 (46%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + YNG Y GWQ Q NG ++Q I++ + ++ + V + GAGRTD+GVHA Sbjct: 1 MNRYFIYLAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L K LN L I I + V K HARF AI R Y Y I Sbjct: 61 TAHFDWEEILSTTSLTKRLNGIL--PCDILIYKIIPVKKNAHARFDAISRKYKYYI--TY 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + L+ M A+ L DFT+F +H + + I + N+ Sbjct: 117 QKNPFRNEQLFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRTNVCRISKAEWNTV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + A FL +RS VG++ +G K + TD K +++++ P L+ Sbjct: 177 QGIDIFTIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALF 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LTDIEY 242 >gi|320528746|ref|ZP_08029898.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] gi|320130956|gb|EFW23534.1| tRNA pseudouridine synthase A [Solobacterium moorei F0204] Length = 361 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+RY ++ Y G Y GWQ Q+ G SIQ +E I +T E V V G+GRTD+GV+A Q Sbjct: 1 MMRYKCVVSYVGRNYSGWQSQRKGDSIQEILETVIERITQEKVNVIGSGRTDAGVNAKAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FD RE A+NA+L + I I+++ D FHAR++ + Y YRI Sbjct: 61 VFMFDTKREMPARKWMGAINAFL--PNDIHIMSVEEEDDCFHARYNVRFKQYNYRINNGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNS 179 K A+ P LD E M+ +LVG HDFT+ S + +RT+ + Sbjct: 119 -YNVFTKDTAFQCPIHLDVEKMKEGIPYLVGTHDFTSLNSSSLEEYPDQVRTVRSITLTE 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +I + V + FL +R L +G K+ + +++ L+A+ + +P EGL Sbjct: 178 EDGVITLAFVGKGFLRYMVRMMASVLIEIGKRKYEPSHIQEILEAKRKSFPHKNSPAEGL 237 Query: 240 YFDSVEY 246 + V+Y Sbjct: 238 TLEYVDY 244 >gi|158334430|ref|YP_001515602.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] gi|158304671|gb|ABW26288.1| tRNA pseudouridine synthase A [Acaryochloris marina MBIC11017] Length = 292 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 110/254 (43%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ S+Q IE + + V +HGAGRTDSGVHA QV Sbjct: 9 QRVALVIQYLGTHFHGWQRQPQHRSVQADIEDTLAEIVQHPVTLHGAGRTDSGVHAAAQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD+ LNA L I I ++V +HARFSA R Y Y + T Sbjct: 69 AHFDVESPIPAHRWASVLNARL--PQDILIRGSALVPSDWHARFSATWRRYRYTLYTDPC 126 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + +W D + M+ A L+GRH F + Sbjct: 127 PNLFLRPYSWHYYYQPLDVQRMQAALDPLIGRHHLAAFHRAGSSRPHSWVDVHEATCVQR 186 Query: 181 G--------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 LI+I V A FL+ +R VG L VG G + + QA+ R + Sbjct: 187 PTVEAKDSSPLIQIEVQASGFLYGMMRLLVGLLVQVGRGLRSPDSFTELWQAERRDQVKY 246 Query: 233 LAPPEGLYFDSVEY 246 AP +GL V Y Sbjct: 247 SAPAKGLCLLRVGY 260 >gi|299144417|ref|ZP_07037497.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518902|gb|EFI42641.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 243 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 124/245 (50%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +I+ Y+GS Y G+Q Q S+++G ++ AI + ++ AGRTDSGVHA+ Q Sbjct: 1 MNIKLIVSYDGSSYHGFQIQPQASTVEGVLKNAIEDTVKHEIKLYTAGRTDSGVHAMGQC 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F L K +N +L D IS++ S VD FHAR+SA + Y Y I + Sbjct: 61 VNFYSETTINIGNLPKVINFHL--PDDISVVGASYVDDDFHARYSAKGKYYRYMIYRGKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + RA P L+ + M+ +L+G +D+ TF H IR ID +V G Sbjct: 119 RNPLYRNRAMHFPYELNLKKMQSTLNYLIGENDYKTFMGRHAIVKDTIRRIDKIEVVEDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I I +SFL +R VG+ + G++ ++ AL + RK GP AP GLY Sbjct: 179 DFIYIDFYGKSFLKNMVRIIVGTAVEIARGRFEEEYMKYALNKKHRKAAGPTAPSYGLYL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 MKIYY 243 >gi|27904686|ref|NP_777812.1| tRNA pseudouridine synthase A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611884|sp|P59508|TRUA_BUCBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27904083|gb|AAO26917.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) (PSU-I) [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 264 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 127/246 (51%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEYNGS Y GWQ QK SS+Q +E A+ ++ V V AGRTD+GVH+ QV Sbjct: 6 FKIALGIEYNGSNYHGWQYQKFASSVQEKVELALSIIANHPVRVTCAGRTDAGVHSTGQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF N YL IS++ V FHAR+SA+ R Y Y + Sbjct: 66 VHFCTSSIRNDQAWILGTNRYL--PKDISVIWKRDVPMHFHARYSALSRRYRYILYNNSC 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++ + L+ E M AAQ+L+G HDFTTFRS HCQ+ +P R I + +V Sbjct: 124 RSSIFYQGLKFYHRILNVEKMNQAAQYLLGEHDFTTFRSSHCQSKTPFRKILYVNVFCIN 183 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 LI I +VA SFL+ +R+ VG L +G K T + L+ ++R + GLY Sbjct: 184 CLIIIDIVANSFLYHMVRNIVGCLIEIGISKKKVTWIRDILKFKNRTSSTKIVESNGLYL 243 Query: 242 DSVEYS 247 V+YS Sbjct: 244 VQVQYS 249 >gi|319763817|ref|YP_004127754.1| tRNA pseudouridine synthase a [Alicycliphilus denitrificans BC] gi|330823919|ref|YP_004387222.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] gi|317118378|gb|ADV00867.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans BC] gi|329309291|gb|AEB83706.1| tRNA pseudouridine synthase A [Alicycliphilus denitrificans K601] Length = 272 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 123/258 (47%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYSGWQSQPSGNTVQDHLEAALGRFATQKVATICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FHAR A+ R Y Y ++ Sbjct: 61 VHFDTGLQRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHARACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD----- 176 ++E GR + LD + M+ A QHL+G HDF++FR+ CQA SP++T+ Sbjct: 119 RPSVEAGRVGWVFHELDGQAMQDAVQHLLGEHDFSSFRASACQAKSPVKTLHRIAITRRG 178 Query: 177 -------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +FLH IR+ +G + +G G + + + L A+ R Sbjct: 179 PANGPSLHGCAPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPQWMRQVLDARSRDA 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 P P+GLYF Y+ Sbjct: 239 AAPTFSPDGLYFLGPVYA 256 >gi|67923564|ref|ZP_00517037.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] gi|67854590|gb|EAM49876.1| tRNA pseudouridine synthase [Crocosphaera watsonii WH 8501] Length = 285 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 112/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y GS + GWQRQ N ++Q IE AI V G +HGAGRTD+GVHA QV Sbjct: 11 KRVALVIQYQGSRFHGWQRQPNQRTVQEDIETAIAQVLGYHTPIHGAGRTDAGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V P LN L + I I V +HARFSA+ R Y Y T + Sbjct: 71 AHFDYVSPIPPQRWADILNHRL--PEDILIRGSQGVPATWHARFSALWRRYRYSFYTDKC 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + L+ E M+ A L+G+H FR + Sbjct: 129 PNLFVKPFSWHYYYEPLNVELMQKALNPLLGKHHLAAFRRAGSHRHHSWVEVQDTQCYRQ 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + Q Q R+ AP +GL Sbjct: 189 GPFIHLEIQANGFLYGMVRLLVGMLVEVGSGKRSLHNFTDIWQNQRRELVKYSAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|254525991|ref|ZP_05138043.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] gi|221537415|gb|EEE39868.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9202] Length = 268 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + K LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLRASKTMKGEHDFFAFQKSGSNRRNSVTKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|114775677|ref|ZP_01451245.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] gi|114553788|gb|EAU56169.1| tRNA pseudouridine synthase A [Mariprofundus ferrooxydans PV-1] Length = 267 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 138/248 (55%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +E++G + GWQ+Q+N +S+Q ++ A+ V GE + V AGRTD+GVHA + Sbjct: 10 QRIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALL 69 Query: 62 AHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H D+ + P N++L D I ++ + V FHARF+ RSY Y+I Sbjct: 70 VHADVSAARWQRSPRAYLHGCNSHL--PDEIRVVGVRAVAADFHARFACRGRSYRYQIWN 127 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R AL++ R W +P+SL+ E M+ AA H +GRHDF+ R+ CQA+ + I ++ Sbjct: 128 RNTASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIV 187 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I I V A +FL+ +R+ VG+L VG GK + D L ++DR+ AP G Sbjct: 188 QHGHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHG 247 Query: 239 LYFDSVEY 246 LYF Y Sbjct: 248 LYFTDAWY 255 >gi|327182857|gb|AEA31304.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1118] Length = 264 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSM--MPTDIVFTDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIRK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 NEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis] Length = 249 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 6/241 (2%) Query: 8 IEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ Y G+Q Q+ N +IQ + +AI ++TGE V + AGRTD+GVHA QV F Sbjct: 1 MSYDGTSYHGFQTQEDPTNLPTIQDELMRAIQVLTGEEVKITCAGRTDAGVHARGQVVDF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 A+N+ L I+++ V + FH+RF A+ + Y Y I + Sbjct: 61 LTTSRIPDEKFPLAMNSLL--PKDIAVVKAETVAEDFHSRFGALGKHYRYSIYNHRIHSP 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD-VNSFGNL 183 ++ + L M+ AA + VG HDF F + +RTI H + NL Sbjct: 119 FHHRYSYQVYPPLHVAAMQEAAGYFVGTHDFRGFCATGSPVKDFVRTIWHCTLTVTEENL 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + V+ FL+ +R G+L VG GK + + + ++DR + G APP+GL Sbjct: 179 LLMDVMGDGFLYNMVRIITGTLVDVGKGKIAPESIPQIIASRDRTQAGTTAPPQGLALLE 238 Query: 244 V 244 V Sbjct: 239 V 239 >gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA] Length = 280 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 7/250 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV Sbjct: 31 LALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVS 90 Query: 64 FDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD+ + +L L D I++ + F ARF A R Y Y + Sbjct: 91 FDVDDRDIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHLCVDST 150 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFD 176 K +W +P LD M AQ+L+G HDF +F + H + Sbjct: 151 CPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVREISFHPE 210 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G AP Sbjct: 211 TVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENAPA 270 Query: 237 EGLYFDSVEY 246 +GL F V Y Sbjct: 271 QGLVFWRVIY 280 >gi|51596937|ref|YP_071128.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186896018|ref|YP_001873130.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] gi|51590219|emb|CAH21856.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 32953] gi|186699044|gb|ACC89673.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis PB1/+] Length = 299 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 37 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 96 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 97 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 154 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 155 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 214 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 215 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 274 Query: 243 SVEY 246 SV+Y Sbjct: 275 SVDY 278 >gi|284992843|ref|YP_003411397.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] gi|284066088|gb|ADB77026.1| tRNA pseudouridine synthase A [Geodermatophilus obscurus DSM 43160] Length = 282 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 114/246 (46%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ GW RQ ++QG +E+A+ V + V + AGRTD+GVHA QV Sbjct: 19 VRLRLGIAYDGTALHGWARQPAQRTVQGDLEEALSRVLRQPVSLTVAGRTDAGVHATGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ R + + + I++ + + F ARF A+RR Y+YR+ Sbjct: 79 AHGDVPRAVWAEQRPRLVRRLRGVLPPDIAVHTVEEAPRDFDARFGALRRHYVYRLTDAD 138 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + A L+ + ++ IRT+ V Sbjct: 139 SGPPPLRRADTVGWPRRLDADAMAVAAELLLGLHDFAAFCRRREGATTIRTLLTLAVTRE 198 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ +R A +F H+ +RS VG+L VG+G+ L + +R P+ PP GL Sbjct: 199 GDLVTVRASADAFCHSMVRSLVGALTAVGEGRRPPEWPAALLTSTERSSEVPVVPPGGLT 258 Query: 241 FDSVEY 246 V+Y Sbjct: 259 LVGVDY 264 >gi|171058363|ref|YP_001790712.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] gi|170775808|gb|ACB33947.1| tRNA pseudouridine synthase A [Leptothrix cholodnii SP-6] Length = 262 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 122/245 (49%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y GS Y GWQ Q NG+++Q +E A+ + V AGRTD+GVHAL QV Sbjct: 1 MRLALGLSYRGSAYRGWQSQTNGATVQDVLEAALCRFAATPIRVSCAGRTDAGVHALNQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D R+ P + N YL +++ V FHAR +A R Y Y ++ Sbjct: 61 VHLDTDRDREPFSWVRGTNTYL--PPDVAVQWCRPVPDAFHARNAARARRYAYVLLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+E G+ I + LD M +A L+G HDF+ FRS CQA SP++ + + G Sbjct: 119 RPAMEAGQVGWIFRPLDQARMEASAALLIGEHDFSAFRSADCQALSPVKQMRTIRIGRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 A +FLH IR+ +G L VG G L L ++DR+ P P+GLYF Sbjct: 179 PYWRFDFEASAFLHHMIRNLMGCLIAVGTGARDPAWLAGVLASRDRRLAAPTFSPDGLYF 238 Query: 242 DSVEY 246 Y Sbjct: 239 LGPRY 243 >gi|226945473|ref|YP_002800546.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] gi|226720400|gb|ACO79571.1| tRNA pseudouridine synthase A [Azotobacter vinelandii DJ] Length = 288 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 123/246 (50%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + +EY G+ Y G+QRQ +SIQ ++E A+ V G + V AGRTD+ VHA Q Sbjct: 20 RVALGLEYRGARYHGFQRQNPRVASIQAALESALSRVAGGVPLNVVCAGRTDALVHASGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E N L IS+ + FHARFSA R Y Y I Sbjct: 80 VVHFDTPIERSMHAWTMGANMNL--PADISVAWAREMPAHFHARFSATARRYRYVIYNDP 137 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + LD E MR AA+ LVG HDF+ FR+ CQA SPI+T+ H + Sbjct: 138 IRPAHMAEEVTWNHRPLDIERMRQAARPLVGCHDFSAFRASQCQARSPIKTVHHLQLIRH 197 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LI + + A +FLH +R+ G L +G G+ + L+ + R + G A P GLY Sbjct: 198 GRLIVLDIRANAFLHHMVRNIAGVLMTIGAGERPVEWAREVLEGRQRHKGGVTAHPYGLY 257 Query: 241 FDSVEY 246 V+Y Sbjct: 258 LVQVDY 263 >gi|315037561|ref|YP_004031129.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325956034|ref|YP_004286644.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] gi|312275694|gb|ADQ58334.1| tRNA pseudouridine synthase A [Lactobacillus amylovorus GRL 1112] gi|325332599|gb|ADZ06507.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus 30SC] Length = 264 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMSYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILALNSM--MPTDIVFTDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ LD + M+ AA+ L+G HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFQYHLDIKKMQEAAKDLLGTHDFTSFAASGGQIEDKVRTIYYVNIRK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 NEEENEIIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLKRVILAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|22125494|ref|NP_668917.1| tRNA pseudouridine synthase A [Yersinia pestis KIM 10] gi|45442187|ref|NP_993726.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Microtus str. 91001] gi|108808073|ref|YP_651989.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|108812343|ref|YP_648110.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|145599273|ref|YP_001163349.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162419146|ref|YP_001604969.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165925379|ref|ZP_02221211.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165937079|ref|ZP_02225644.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|166008316|ref|ZP_02229214.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166214223|ref|ZP_02240258.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|167398935|ref|ZP_02304459.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421195|ref|ZP_02312948.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424547|ref|ZP_02316300.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469280|ref|ZP_02333984.1| tRNA pseudouridine synthase A [Yersinia pestis FV-1] gi|170023770|ref|YP_001720275.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229838336|ref|ZP_04458495.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895366|ref|ZP_04510539.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|229898902|ref|ZP_04514047.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229902698|ref|ZP_04517815.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|270490127|ref|ZP_06207201.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294504649|ref|YP_003568711.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|21958390|gb|AAM85168.1|AE013763_2 pseudouridylate synthase I [Yersinia pestis KIM 10] gi|45437051|gb|AAS62603.1| pseudouridylate synthase I [Yersinia pestis biovar Microtus str. 91001] gi|108775991|gb|ABG18510.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|108779986|gb|ABG14044.1| tRNA pseudouridine synthase A [Yersinia pestis Antiqua] gi|145210969|gb|ABP40376.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides F] gi|162351961|gb|ABX85909.1| tRNA pseudouridine synthase A [Yersinia pestis Angola] gi|165914942|gb|EDR33554.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. IP275] gi|165922986|gb|EDR40137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. F1991016] gi|165992698|gb|EDR44999.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. E1979001] gi|166204579|gb|EDR49059.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. B42003004] gi|166960684|gb|EDR56705.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051439|gb|EDR62847.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056429|gb|EDR66198.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750304|gb|ACA67822.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis YPIII] gi|229680145|gb|EEO76244.1| tRNA pseudouridine synthase A [Yersinia pestis Nepal516] gi|229688450|gb|EEO80521.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. India 195] gi|229694702|gb|EEO84749.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701674|gb|EEO89700.1| tRNA pseudouridine synthase A [Yersinia pestis Pestoides A] gi|262362710|gb|ACY59431.1| tRNA pseudouridine synthase A [Yersinia pestis D106004] gi|270338631|gb|EFA49408.1| tRNA pseudouridine synthase A [Yersinia pestis KIM D27] gi|294355108|gb|ADE65449.1| tRNA pseudouridine synthase A [Yersinia pestis Z176003] gi|320014566|gb|ADV98137.1| tRNA pseudouridine synthase A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 293 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 31 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 90 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 91 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 148 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 149 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 208 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 209 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 268 Query: 243 SVEY 246 SV+Y Sbjct: 269 SVDY 272 >gi|92113385|ref|YP_573313.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] gi|91796475|gb|ABE58614.1| tRNA pseudouridine synthase A [Chromohalobacter salexigens DSM 3043] Length = 290 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M +EY+GS Y GWQR K+ +S+QG++E A+ + V V +GRTDSGVHA RQV HFD Sbjct: 1 MGVEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 NA L +++ + V FHAR SA+ R Y Y I+ + + L Sbjct: 61 APVTRTQKAWLFGANANL--PRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSRPVL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 E+ A + LD E M AAQ LVG HDF++FR+ CQ+ S R + +V +G L+ Sbjct: 119 ERANATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQLVV 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + A +FLH IR+ G+L VG G ++ L + L +DR + AP GL+F Sbjct: 179 IDIQANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFVDAL 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|262366637|gb|ACY63194.1| tRNA pseudouridine synthase A [Yersinia pestis D182038] Length = 293 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 31 KIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQVV 90 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 91 HFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRYR 148 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 149 PAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHGA 208 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 209 YIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYLV 268 Query: 243 SVEY 246 SV+Y Sbjct: 269 SVDY 272 >gi|229154192|ref|ZP_04282315.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] gi|228629282|gb|EEK85986.1| tRNA pseudouridine synthase A 2 [Bacillus cereus ATCC 4342] Length = 250 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE + + G+ + + G RTD+GVHAL Sbjct: 6 MYNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVVSEMVGKEIEIIGCSRTDAGVHALN 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 66 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + K L+ ++M+ AA+HLVG HDFT F + + S +R + +V Sbjct: 124 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLEVME 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++IRV FLH +R VG+L VG G+ + + L+A+ R + LA GL Sbjct: 184 EAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPHILEAKQRNQINCLAEASGL 243 Query: 240 YFDSVEY 246 Y ++VE+ Sbjct: 244 YLENVEF 250 >gi|313157719|gb|EFR57130.1| tRNA pseudouridine synthase A [Alistipes sp. HGB5] Length = 257 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG+ Y GWQRQ + S+Q ++E+A+ + E + V GAGRTD+GV+A V Sbjct: 4 MRYFLELRYNGAAYCGWQRQPDMPSVQQTLERALTTLLREKIEVTGAGRTDTGVNASYYV 63 Query: 62 AHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P + LN L I++ +++ V HARF+A R YR Sbjct: 64 AHFDCEEPVPDPAQVVYKLNFLL--PGDIAVGSMTPVGADAHARFAA--REREYRYYIEP 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNS 179 + W LD E M AA L+ DFT+F ++ + R + Sbjct: 120 RKNPFTRDATWQYYVPLDMERMNEAAASLLEYDDFTSFAKLNSNNKTNICRIMHAAWTAD 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL +RS VG+L VG G++T + + ++D AP +GL Sbjct: 180 ERGVLCFTIRADRFLRNMVRSLVGTLVDVGRGRYTPDGFREIVGSRDLSRSSGGAPAQGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 FLSDVVY 246 >gi|225872353|ref|YP_002753808.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] gi|225793375|gb|ACO33465.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC 51196] Length = 254 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 89/256 (34%), Positives = 123/256 (48%), Gaps = 12/256 (4%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + + Y+G+ Y GWQ Q +IQG + A+ +TGE V+ G+GRTD+GVHAL Sbjct: 1 MPLNWKLTLAYDGTDYRGWQVQPELPTIQGELAAAVERITGERVLPQGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA F L L +ALN L I +L + + FHAR SA + Y YRI Sbjct: 61 QVASFVLKAPIPAENLHRALNRTL--PAAIRVLGAESMPEDFHARHSARSKWYEYRIFRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPIR 170 + + + LD E MR AA VG HDF +F R S +R Sbjct: 119 EVCPPWTARYVYALHWPLDVEAMRRAAAAFVGEHDFRSFAASDPDVAARGSEDAEESHVR 178 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 TI +L+ RV FLH +R+ VG++ VG ++ + D+ L +DR Sbjct: 179 TIFASGWAEEDDLLIYRVHGNGFLHHMVRNLVGTMIGVGRRQFDAEDMPGLLALRDRSAA 238 Query: 231 GPLAPPEGLYFDSVEY 246 G AP GL+ SV Y Sbjct: 239 GATAPARGLFLYSVCY 254 >gi|282898331|ref|ZP_06306322.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] gi|281196862|gb|EFA71767.1| tRNA pseudouridine synthase [Raphidiopsis brookii D9] Length = 292 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQK ++Q IE AI V G V +HGAGRTD+GVHA QVA Sbjct: 13 RVALVIQYLGTNFHGWQRQKAQRTVQEEIEIAIASVLGYHVTLHGAGRTDAGVHAAAQVA 72 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HF+ LN+YL I I + V + +HARFSA+ R Y Y I T+ P Sbjct: 73 HFNATGHIPAHKWATVLNSYL--PPDILIRASAGVKESWHARFSAVYRRYRYTIYTQALP 130 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L+ E M+ A LVG+H F S I + G Sbjct: 131 NLFVSPFSWHYYYAPLEEELMQAALTPLVGKHHLAAFHRAGSARSHSWVEIQAVECCRQG 190 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ I + A FL+ +R VG L VG + + D Q +DR++ APP+GL Sbjct: 191 SLVHIEIQANGFLYGMVRLLVGMLVQVGSKQKSLEDFTNIWQTEDREKVKYAAPPQGLCL 250 Query: 242 DSVEYS 247 V Y+ Sbjct: 251 LRVGYN 256 >gi|227539074|ref|ZP_03969123.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] gi|227241078|gb|EEI91093.1| tRNA-pseudouridine synthase I [Sphingobacterium spiritivorum ATCC 33300] Length = 257 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + I Y G+ Y GWQ Q N S+Q + + + + + GAGRTD+GVHA + Sbjct: 6 KRFFLEIAYQGTAYHGWQIQHNAVSVQEKLNDVLKTLLRKDIETIGAGRTDTGVHARQLF 65 Query: 62 AHFDLVREW---VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 HFD + E P +LNA L I++ L V + HARF A RSY Y + Sbjct: 66 VHFDAIPEGLLLQPDKFVHSLNALL--PHDIAVYRLLPVVDEAHARFDATSRSYEYHLH- 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +WL D M A Q+L+GR DF F + Q + I + Sbjct: 123 -FKKDPFLIHASWLTRDIPDVAKMNEACQYLLGRQDFECFSKSNTQVFTNFCDISRAEWL 181 Query: 179 SFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + A FL +R+ VG+L +G +++ + ++ R + G P Sbjct: 182 WNTDDHLVFHISADRFLRNMVRAIVGTLLEIGLKGKEPVYIQEVIASKSRSKAGTSVPAH 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTEVVY 250 >gi|257868757|ref|ZP_05648410.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] gi|257802921|gb|EEV31743.1| tRNA pseudouridine synthase [Enterococcus gallinarum EG2] Length = 246 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 77/247 (31%), Positives = 126/247 (51%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQ IE + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYLGWQRLGDSDRTIQEKIESILTQMTNEKIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + P + + LN YL I I ++ ++FHAR++A + Y Y + Sbjct: 61 QVANFKTASDLSPEKMLQFLNRYL--PQDIVIKEVAEASERFHARYNATGKQYSYYVWNS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P E+ R++ P+ LD + M+ A + +G HDF F ++ S RTI+ + Sbjct: 119 PIPTVFERHRSFHCPQELDWDKMQAACEKFIGTHDFIGFSALKKTKKSTTRTIEELSLTR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ R FL+ +R G++ +G G + +++ Q RK G P +GL Sbjct: 179 EGDMLRFRFKGDGFLYKMVRIITGTILEIGAGTMDISAIDEIFTNQVRKAAGETVPSQGL 238 Query: 240 YFDSVEY 246 + D+V Y Sbjct: 239 FLDAVYY 245 >gi|300312591|ref|YP_003776683.1| tRNA pseudouridine synthase [Herbaspirillum seropedicae SmR1] gi|300075376|gb|ADJ64775.1| tRNA pseudouridine synthase protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 28/273 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + ++Y+G+ + GWQ Q + ++Q +E A+ + + + AGRTDSGVHAL Q+ Sbjct: 12 RRVVLGVQYDGASWQGWQTQPHRQTVQDQLEAALQRFSTQPIATTCAGRTDSGVHALEQI 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--------------------- 100 HFD + NA+L + + Sbjct: 72 VHFDTPIARDSFSWVRGTNAFLPPTIAVRWACELPYVDDAAIASAASQAAELHGADRAGA 131 Query: 101 -------FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 FHARFSAI R+Y Y + L G+A + LD + M AAQHL+G H Sbjct: 132 DSLSQFGFHARFSAIARTYHYVLYNHAVRTPLLAGKAGWTFRPLDADRMHRAAQHLIGEH 191 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DFT+FR++ CQA SP+R ++ V G++I + A +FLH +R+ VGSL +VG GK Sbjct: 192 DFTSFRAVECQAKSPVRKMESIAVRRHGDMIVFTLKANAFLHHMVRNIVGSLVVVGSGKQ 251 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L +DR P P+GLY V+Y Sbjct: 252 EPDWMGQVLALRDRSRAAPTFMPDGLYLARVDY 284 >gi|93006392|ref|YP_580829.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] gi|92394070|gb|ABE75345.1| tRNA pseudouridine synthase A [Psychrobacter cryohalolentis K5] Length = 280 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AH Sbjct: 18 LAIAIEFLGTHYHGWQRQREVLGVQEALETAISTVANEPVEVIAAGRTDSSVHAGNMIAH 77 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 78 FVTHAYRPSHNWLRGVNSLL--PDDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 135 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 136 AILNHQVTHIHEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFAHGQF 195 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 196 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 255 Query: 244 VEY 246 Y Sbjct: 256 AYY 258 >gi|238920608|ref|YP_002934123.1| tRNA pseudouridine synthase A, [Edwardsiella ictaluri 93-146] gi|238870177|gb|ACR69888.1| tRNA pseudouridine synthase A, putative [Edwardsiella ictaluri 93-146] Length = 275 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IEY+GS Y GWQRQ+ S+Q +E A+ V E V V AGRTD+GVHA QV H Sbjct: 17 LALGIEYDGSRYAGWQRQREVDSVQARLEAALSRVASEPVTVFCAGRTDAGVHATGQVVH 76 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F +NA+L +++ + V FHARFSA R Y Y I + Sbjct: 77 FTTHALRQEGAWTMGVNAHL--PKDVAVRWVKDVSPDFHARFSATARRYRYVIYNHRYRP 134 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + LD E M A Q L+G +DF+ FR+ CQ+ +P R + H V+ +G+ Sbjct: 135 AVLQSGVTHFYLPLDAERMARAGQALLGENDFSAFRAAQCQSRTPWRNVSHLRVDRYGSY 194 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + + A +F+H +R+ VGSL VG G + + L +DR A GLY + Sbjct: 195 VVVDIKANAFVHHMVRNIVGSLLEVGCGNQPESWIAGLLAGRDRTLAAATAKAAGLYLVA 254 Query: 244 VEY 246 V+Y Sbjct: 255 VDY 257 >gi|182681198|ref|YP_001829358.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] gi|32130280|sp|Q87DS1|TRUA_XYLFT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238691112|sp|B2I9J0|TRUA_XYLF2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|182631308|gb|ACB92084.1| tRNA pseudouridine synthase A [Xylella fastidiosa M23] Length = 257 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFVGPLY 245 >gi|319787538|ref|YP_004147013.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] gi|317466050|gb|ADV27782.1| tRNA pseudouridine synthase A [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+G G+ GWQ +G ++Q ++E+A+ V + + V AGRTD+GVHA Sbjct: 1 MRYALGVEYDGGGFQGWQGLGPSGPSTVQATLERALSSVADQAITVSCAGRTDAGVHAEC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E P + L T+ + VD FHARFSA R Y Y ++ R Sbjct: 61 QVVHFDSTAERDPRAWTLGVTGRL--PPTVCVRWCMPVDDAFHARFSARARRYRYTLVNR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + + LD + M AAQ L+G +DF+ FR++HCQA R + V Sbjct: 119 PVRPALYRSTMAWERRPLDADAMHRAAQALLGENDFSAFRTVHCQAPHARRNLQDIQVRR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I V A +FLH +R+ VGSL VG G + + L +DR GP A P+GL Sbjct: 179 SGETVSIEVQANAFLHHMVRNIVGSLLEVGAGARDEGWIARLLAGRDRTLAGPTAAPQGL 238 Query: 240 YFDSVEY 246 F Y Sbjct: 239 VFLRPLY 245 >gi|17231681|ref|NP_488229.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7120] gi|42559852|sp|Q8YPK5|TRUA_ANASP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|17133324|dbj|BAB75888.1| tRNA-pseudouridine synthase I [Nostoc sp. PCC 7120] Length = 282 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTDSGVHA QV Sbjct: 11 QRVALVVQYLGTHFHGWQRQKQHRTVQEEIETAIAKILGHHVTLHGAGRTDSGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD +N+YL I I + V ++HARFSA R Y Y I T Sbjct: 71 AHFDATGLIPAHKWASVINSYL--PKDILIKASAAVGDRWHARFSAAYRRYRYTIYTEDR 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P LD M+ A + L+G+H F + S + + + Sbjct: 129 PNLFVTPFSWHYYYAPLDESLMQAALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVECHRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG G+ T + + + Q R+E AP +GL Sbjct: 189 GPFIHIEIQADGFLYGMVRLLVGMLVQVGSGQRTLANFTELWKEQRREEVKHAAPSQGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|225850198|ref|YP_002730432.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] gi|225645344|gb|ACO03530.1| tRNA pseudouridine synthase A [Persephonella marina EX-H1] Length = 244 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y ++I Y G Y GWQ+Q ++QG +E+ + ++ E +V+ G+GRTD+GVHAL QV Sbjct: 5 HNYKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + P + + LNA L IS+ ++ V FHARFSA ++Y+YRI T+ Sbjct: 65 ANFKTISYRKPEEIYRYLNATL--PRDISVKSVEEVPLSFHARFSAKGKTYIYRIYTK-- 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P G W I K LD + M A + + D + + + G Sbjct: 121 PDPFLHGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDVEIR-ELSMTYDG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +IEI++ A FL +R VG + +G G + + E ++A+D + +APPEGL+ Sbjct: 180 KIIEIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFL 239 Query: 242 DSVEY 246 V Y Sbjct: 240 KEVYY 244 >gi|157414138|ref|YP_001485004.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] gi|166991165|sp|A8G737|TRUA_PROM2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157388713|gb|ABV51418.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9215] Length = 268 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+G Y GWQ+QKN +++Q +E A+F +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGYHYSGWQKQKNATTVQEILESALFKITNHTVKTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHFDIDSVIPGFSYSNILNNLL--PSTIRILESVEVKNSWHACYSAVYRHYRYVINNGK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + K LD M A++ + G HDF F+ + + I + D+ Sbjct: 119 FPNLFINNWSWHRYQKVLDEVLMLHASKTMEGEHDFFAFQKSGSNRRNSVTLIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R VG L LVG+ K +S + + + AP +GL Sbjct: 179 VEDLILVDIKATGFLYGMVRLIVGQLVLVGEKKISSDIFIDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|302784784|ref|XP_002974164.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] gi|300158496|gb|EFJ25119.1| hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii] Length = 321 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + GWQRQ+ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 28 QRYLVGIEYIGTRFSGWQRQEGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNV 87 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISDTISILNLSIV-DKQFHARFSAIR 109 H DL R P ++ +A+N +L+ + + FHARF A Sbjct: 88 FHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKE 147 Query: 110 RSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI+ E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SP Sbjct: 148 RTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASP 207 Query: 169 IRTIDHFDVNSFGNL--------------------IEIRVVARSFLHTQIRSFVGSLKLV 208 ++T++ + + + A+SFL+ Q+R VG+LK V Sbjct: 208 VKTLEELSIRETVSWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGV 267 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK T+ D+ K L+ + P+AP GL+ V+Y Sbjct: 268 GAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKY 305 >gi|229830208|ref|ZP_04456277.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] gi|229791506|gb|EEP27620.1| hypothetical protein GCWU000342_02317 [Shuttleworthia satelles DSM 14600] Length = 267 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 120/243 (49%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I Y+G+ Y GWQ Q NG S+Q + + + GE + GA RTD+GVH++ F Sbjct: 2 RATIAYDGTEYCGWQVQPNGISVQEVVNAGLSKLLGEEITCVGASRTDAGVHSMGNEILF 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + ALN YL +L+ FH RFS ++Y YRI+ R+ P+ Sbjct: 62 ETKTRIPADKIAYALNQYLPEDIVCQGSSLA--ADDFHPRFSESYKTYEYRILNRRFPMP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF-DVNSFGNL 183 + + LD + M+ AA L+G HDF++F SIH Q+ + +RTI + +L Sbjct: 120 TMRRDSLFYHYDLDEKRMQEAADCLLGEHDFSSFASIHTQSKTRVRTIYQALVSRNADDL 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I IR+ FL+ +R G+L VG G + ++ L +R+ GP AP GL Sbjct: 180 ITIRLCGDGFLYNMVRIIAGTLIEVGAGITSPRAFQQILDGMNRELAGPTAPAHGLTQVG 239 Query: 244 VEY 246 + Y Sbjct: 240 LHY 242 >gi|21231977|ref|NP_637894.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767896|ref|YP_242658.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|188991012|ref|YP_001903022.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. B100] gi|30913393|sp|Q8P7R5|TRUA_XANCP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|81306127|sp|Q4UWD5|TRUA_XANC8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470759|sp|B0RR81|TRUA_XANCB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21113710|gb|AAM41818.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573228|gb|AAY48638.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris str. 8004] gi|167732772|emb|CAP50966.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. campestris] Length = 257 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 129/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q +++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQATLQAALSSVADAPIQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSVAVRWCVPA--AEDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDAQAMHTAAQALLGENDFGAFRSVQCQALHARRNLQAITVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + L +DR GP APP+G Sbjct: 178 RLGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPIDWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|166154677|ref|YP_001654795.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|166155552|ref|YP_001653807.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335947|ref|ZP_07224191.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2tet1] gi|238687386|sp|B0B836|TRUA_CHLT2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687485|sp|B0BCA1|TRUA_CHLTB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|165930665|emb|CAP04162.1| tRNA pseudouridine synthase A [Chlamydia trachomatis 434/Bu] gi|165931540|emb|CAP07116.1| tRNA pseudouridine synthase A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 267 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 127/250 (50%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + + I Y G+ Y GWQ Q N SIQ ++ + + G + V +GRTD+GVHA Sbjct: 1 MTKKIVLQIAYQGTSYSGWQYQPNALSIQEVLKTILKKIAGFRISVISSGRTDAGVHAQG 60 Query: 60 QVAHFDLVREWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q+AHF + K LNA L I I + + D FH+RFSAI + Y Y + Sbjct: 61 QIAHFHCPDHPHFTDPRQIQKMLNALL--PHDIVIRDAVMTDGDFHSRFSAIAKEYRYTL 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 PL + + L+ M+ AAQ+LVG HDF +F ++ + SS IRT+ D Sbjct: 119 SLLPKPLPHHRLFCFSPRYKLNIARMQEAAQYLVGTHDFASFANLGREYSSTIRTLYTLD 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ +L+ + FL+ +R+ VG+L +G GK+ L L +DR++ P APP Sbjct: 179 LSEQEHLVTVICRGNGFLYKMVRNIVGALLDIGKGKYPPEHLLDMLATKDRRKGPPSAPP 238 Query: 237 EGLYFDSVEY 246 GL V Y Sbjct: 239 YGLSLHHVCY 248 >gi|15606137|ref|NP_213514.1| pseudouridine synthase I [Aquifex aeolicus VF5] gi|3929394|sp|O66953|TRUA_AQUAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2983318|gb|AAC06908.1| pseudouridine synthase I [Aquifex aeolicus VF5] Length = 241 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 5/244 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ ++GWQ Q N ++QG I+KA+ + E V V G RTDSGVHAL Sbjct: 1 MPNYLLRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A+F +++ L KALN L + + + V ++F+AR+S + YLY+I + Sbjct: 61 IANFKTQKDFPEEKLLKALNGIL--PKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + ++ E +R + G HDF + + ++ I ++ +N Sbjct: 119 VRNPFLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKLEEERNTVI-NLEEVSLNVE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LIEIR+ A FL +R VG+ + G ++ LE+ LQ + APP+GL+ Sbjct: 178 YPLIEIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGK--GNSPYTAPPQGLH 235 Query: 241 FDSV 244 + V Sbjct: 236 LEKV 239 >gi|302770785|ref|XP_002968811.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] gi|300163316|gb|EFJ29927.1| hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii] Length = 300 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + GWQRQ ++QG++E A G+ V G+ RTD+GVHALR V Sbjct: 7 QRYLVGIEYIGTRFSGWQRQGGVRTVQGTLEDAFSSFMGQSVSTTGSSRTDAGVHALRNV 66 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISDTISILNLSIV-DKQFHARFSAIR 109 H DL R P ++ +A+N +L+ + + FHARF A Sbjct: 67 FHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPDFHARFRAKE 126 Query: 110 RSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI+ E+ RAW + + L+ M+ A Q L+G HDF++FR+ CQA+SP Sbjct: 127 RTYYYRILAGSCRASLFERDRAWHVEEPLNLIAMQSACQVLLGTHDFSSFRASGCQAASP 186 Query: 169 IRTIDHFDVNSFGNLIEI--------------------RVVARSFLHTQIRSFVGSLKLV 208 I+T++ + + A+SFL+ Q+R VG+LK V Sbjct: 187 IKTLEELSIRETVSWPHFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGV 246 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK T D+ K L+ + P+AP GL+ V+Y Sbjct: 247 GAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKY 284 >gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1] Length = 284 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 7/250 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL QV Sbjct: 35 LALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHALGQVVS 94 Query: 64 FDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 FD+ + +L L D I++ + F ARF A R Y Y + Sbjct: 95 FDVDDRDIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHLCVDST 154 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFD 176 K +W +P LD M AQ+L+G HDF +F + H + Sbjct: 155 CPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVREISFHPE 214 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G AP Sbjct: 215 TVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAGENAPA 274 Query: 237 EGLYFDSVEY 246 +GL F V Y Sbjct: 275 QGLVFWRVIY 284 >gi|227894551|ref|ZP_04012356.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] gi|227863710|gb|EEJ71131.1| tRNA pseudouridine synthase A [Lactobacillus ultunensis DSM 16047] Length = 262 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRVIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + A+N+ + I IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSM--MPMDIIFNKCQIVDEDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--FDV 177 ++ P L+ M+ AA+ L+G+HDFT+F + Q +RTI + + Sbjct: 121 HFVNPFKRFYTGHFPYQLNISKMQEAARDLLGKHDFTSFAASGGQIEDKVRTIYYVNIEK 180 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N + + FL+ +R V +L +G+G+ DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNGRRPIHDLKRVISAKDRQEVRQTAQAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|229027990|ref|ZP_04184143.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] gi|228733378|gb|EEL84207.1| tRNA pseudouridine synthase A [Bacillus cereus AH1271] Length = 235 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 3/235 (1%) Query: 14 GYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA QV HFD Sbjct: 2 HFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQVIHFDTPLSLEE 61 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 ALN L D I I + ++FHAR+ R+ Y YR++ + + + Sbjct: 62 WQWSNALNTML--PDDIVIRQVEKKTEEFHARYGVERKEYRYRVLLSKTADVFRRNYVYQ 119 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 P L+ ++R A + +G HDFT+F S +RTI ++ + + R V Sbjct: 120 YPYPLEINSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQDDELIFRFVGNG 179 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 FL+ +R VG+L VG GK + + L Q+R+ G +AP GLY V Y+ Sbjct: 180 FLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQVNYN 234 >gi|302388052|ref|YP_003823874.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] gi|302198680|gb|ADL06251.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1] Length = 341 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 2/227 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R MI+ Y+G+ Y GWQ Q NG +I+ + K + + E + V GA RTDSGVH+ Sbjct: 1 MKRVKMIVAYDGTNYCGWQIQNNGITIEEVLNKELTSLLKEPITVIGASRTDSGVHSEGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA FD +C ALN L D I IL V +H R ++Y Y+I+ R+ Sbjct: 61 VAVFDTENRMPADKICFALNQRL--PDDIRILQSQEVRPDYHPRKQNCVKTYEYKIMNRK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + ++ LD E MR +LVG HDF +F + QA +RTI D+ Sbjct: 119 IEVPTLRLYSYFCYFPLDVERMREGGAYLVGEHDFKSFCTARGQAEETVRTIYSLDIEKS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 G+LI IR+ FL+ +R G+L VG G + + +E+ L A+DR Sbjct: 179 GDLITIRIKGSGFLYNMVRIIAGTLMKVGMGVYPPSHVEEILDARDR 225 >gi|71065963|ref|YP_264690.1| tRNA pseudouridine synthase A [Psychrobacter arcticus 273-4] gi|71038948|gb|AAZ19256.1| probable tRNA pseudouridine synthase [Psychrobacter arcticus 273-4] Length = 276 Score = 165 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + IE+ G+ Y GWQRQ+ +Q ++E AI V E V V AGRTDS VHA +AH Sbjct: 14 LAIAIEFLGTHYHGWQRQREVLGVQQALETAISTVANEPVEVIAAGRTDSSVHASNMIAH 73 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F + +N+ L D I++ + + FHARF+AI R Y Y + + Sbjct: 74 FVTHAYRPTHNWLRGVNSLL--PDDIALRWVQPMPADFHARFAAIARRYRYITLNQTQRP 131 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A+ + I + LD + M++AA +VG HDF+++R+ CQ++ P+R I H ++ + G Sbjct: 132 AILNHQVTHIYEPLDLKAMQLAAADIVGTHDFSSYRAAACQSNQPVRHISHANLFTHGPF 191 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + A FLH +R+ +G+L +G + D L +DR P A +GLYF + Sbjct: 192 IVFDIQADGFLHHMVRNLMGTLYAIGRHELEPADFLNILAKKDRTIAPPTASGDGLYFIN 251 Query: 244 VEY 246 Y Sbjct: 252 AYY 254 >gi|71899860|ref|ZP_00682009.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|71730377|gb|EAO32459.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] Length = 257 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFVGPLY 245 >gi|87121856|ref|ZP_01077742.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] gi|86162885|gb|EAQ64164.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121] Length = 275 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + +++EY GS Y GWQ QK + ++Q +E+A+ + + V AGRTD+ VHA Q Sbjct: 4 KKVALVVEYKGSEYKGWQAQKYDVPTVQKCLEEALSKIAAHTIKVVCAGRTDASVHASAQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ E +N+ L I+++ + + FHARFSA+ R Y Y I + Sbjct: 64 VVHFETDVERSERAWTLGVNSNL--PKDIAVVAAANMHPSFHARFSAVSRRYRYVIYSHP 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ K LD M+ AA+ VG+HDF++FR++ CQA +P+RTI +F++ Sbjct: 122 LRPAIMSKEVTWTHKKLDILKMQQAAKVFVGKHDFSSFRAVGCQAHTPVRTILNFEIYQS 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A +FLH IR+F G L +G G+ + K L A+DR + G PPEGLY Sbjct: 182 GQYIVLDIRANAFLHHMIRNFAGVLMTIGAGEEEVSWASKVLAAKDRTKGGITGPPEGLY 241 Query: 241 FDSVEY 246 F EY Sbjct: 242 FVDAEY 247 >gi|119471543|ref|ZP_01613957.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] gi|119445486|gb|EAW26772.1| tRNA pseudouridine synthase A [Alteromonadales bacterium TW-7] Length = 264 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + +EYNG+ Y GWQRQ + +S+Q +EKA+ + V + AGRTD+GVH QV Sbjct: 1 MRVALGVEYNGARYSGWQRQSHVNSVQQEVEKALSSICNHPVEIVCAGRTDAGVHGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ V +N L I+I V + FHARFSA R Y Y I Sbjct: 61 VHFETNASREMVAFTMGMNTLL--PKDIAIRFAQPVVEDFHARFSATARRYRYVIYNYPY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD + M+ A QHL+G HDFT+FR++HCQA++ RTI H V G Sbjct: 119 RGAVMNEGVTHFHHKLDEKVMQEACQHLIGEHDFTSFRALHCQANTAKRTIHHLSVQRQG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + I + A +FLH +R+ G L +G K L++ L ++R + A GLY Sbjct: 179 DYVVIDIKANAFLHHMVRNITGCLMDIGLHKHQPVWLKELLDLKERAKASATAKAAGLYL 238 Query: 242 DSVEY 246 V+Y Sbjct: 239 VDVDY 243 >gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243] Length = 255 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 123/255 (48%), Gaps = 10/255 (3%) Query: 2 IR---YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R + + YNG+ + G+ RQ +++QG +E A+ ++ V AGRTD+GVHAL Sbjct: 1 MRDHTLALTLSYNGAPFSGFARQPGQTTVQGDLEDALRMLFRRDVETTCAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QV FD+ + +L L D I++ + F ARF A R Y Y + Sbjct: 61 GQVVSFDVDDRDIAGRSLPSLRRSLNALTHDAITVREVEPKKLGFSARFDAQAREYHYHL 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRT 171 K +W +P LD M AQ+L+G HDF +F + Sbjct: 121 CVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFCMAASAEGKPTHRNVREI 180 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 H + NL+ I+VV +FLH+ +R+ VG+L +VG G+ + + + L+A DR+ G Sbjct: 181 SFHPETVMGENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQRDADWVGEVLEACDRRVAG 240 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL F V Y Sbjct: 241 ENAPAQGLVFWRVIY 255 >gi|323485798|ref|ZP_08091133.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323693150|ref|ZP_08107368.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] gi|323400786|gb|EGA93149.1| tRNA pseudouridine synthase A [Clostridium symbiosum WAL-14163] gi|323502633|gb|EGB18477.1| pseudouridylate synthase [Clostridium symbiosum WAL-14673] Length = 265 Score = 165 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 12/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++++Y+G+ Y GWQ+Q N ++QG +E + + G V VHG+GRTD+GVHAL Q Sbjct: 4 KNIRILLQYDGTRYDGWQKQGNTQQTVQGKLEAVLSCLAGGPVEVHGSGRTDAGVHALGQ 63 Query: 61 VAHFDLVREWVPVILCKA---------LNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 VA+F L +A LN YL + I +L +FH+R +A+ ++ Sbjct: 64 VANFHLPLSVFCGSQTEAADMIRIKNYLNEYL--PEDIRVLVAEEARPRFHSRLNALSKT 121 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+YRI T E+ + + K D E M+ AA LVG HDF F S+ S +RT Sbjct: 122 YIYRIETADKNDVFERKYRYGLGKEPDLEIMKRAASILVGTHDFRAFSSLKKTKKSTVRT 181 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 I+ D+ G +EI + FL+ +R VG+L G + + +++AL++ DR G Sbjct: 182 INRIDIRRDGTQLEILLEGNGFLYNMVRIIVGTLVEAGLLERSVQSVKEALESLDRSLAG 241 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL+ +V Y Sbjct: 242 RTAPAKGLFLAAVAY 256 >gi|149365240|ref|ZP_01887275.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|153950548|ref|YP_001400399.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] gi|218929838|ref|YP_002347713.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|25009503|sp|Q8ZD27|TRUA_YERPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901277|sp|Q668W9|TRUA_YERPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|166991167|sp|A7FGM1|TRUA_YERP3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|115348449|emb|CAL21385.1| tRNA pseudouridine synthase A [Yersinia pestis CO92] gi|149291653|gb|EDM41727.1| tRNA pseudouridine synthase A [Yersinia pestis CA88-4125] gi|152962043|gb|ABS49504.1| tRNA pseudouridine synthase A [Yersinia pseudotuberculosis IP 31758] Length = 264 Score = 165 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNGS YFGWQRQ+ +S+Q +E A+ V E + V AGRTD+GVHA QV Sbjct: 1 MKIALGIEYNGSRYFGWQRQQEVASVQACLEAALSKVANEPIGVFCAGRTDAGVHATGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF +N++L I++ + VD FHARFSA R Y Y I + + Sbjct: 61 VHFVTSAVRKDAAWTMGVNSHL--PADIAVRWVKTVDNDFHARFSATARRYRYIIFSHRY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 A+ LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H V G Sbjct: 119 RPAILAQGVTHCYMPLDAEKMERAAQCLLGENDFTSFRAVQCQSRTPWRNVKHVKVTRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + + A +F+H +R+ VGSL +G G T + + L +DR A +GLY Sbjct: 179 AYIVVDIKANAFVHHMVRNIVGSLIEIGCGNQDVTWMAELLALKDRTRAAATAKADGLYL 238 Query: 242 DSVEY 246 SV+Y Sbjct: 239 VSVDY 243 >gi|111023127|ref|YP_706099.1| pseudouridylate synthase [Rhodococcus jostii RHA1] gi|110822657|gb|ABG97941.1| pseudouridylate synthase [Rhodococcus jostii RHA1] Length = 297 Score = 165 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QV Sbjct: 26 RRLRLDIAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRTPLQLTVAGRTDAGVHATGQV 85 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + +P + + + + I ++ + F ARFSA+RR Y YR+ + Sbjct: 86 AHVDVPVDALPDDPSRLVRRLARFLPKDVRIKRIAFAPEHFDARFSAMRRHYEYRLTSAV 145 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + R + + D E MR A+ L+G HDF F + ++ +R + FD Sbjct: 146 YGADPLRARDTVSYPKVLDLELMRSASATLLGLHDFAAFC-KRREGATTVRDLQRFDWER 204 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++ V A +F + +RS VG++ VG+G+ +E LQ + R +AP GL Sbjct: 205 DGDVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLGWIEGLLQEKSRSSSILVAPAHGL 264 Query: 240 YFDSVEY 246 V+Y Sbjct: 265 SLVRVDY 271 >gi|28198519|ref|NP_778833.1| tRNA pseudouridine synthase A [Xylella fastidiosa Temecula1] gi|28056603|gb|AAO28482.1| pseudouridylate synthase [Xylella fastidiosa Temecula1] Length = 258 Score = 165 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 2 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQ 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L S + + FHARFSA R Y YR++ Sbjct: 61 CQVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 119 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 179 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 238 Query: 239 LYFDSVEY 246 L F Y Sbjct: 239 LVFVGPLY 246 >gi|119511153|ref|ZP_01630270.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] gi|119464141|gb|EAW45061.1| tRNA pseudouridine synthase A [Nodularia spumigena CCY9414] Length = 296 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 119/246 (48%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQK S+Q IE AI V G + +HGAGRTDSGVHA QV Sbjct: 12 HRVALVIQYVGTHFHGWQRQKQHRSVQEEIETAIATVLGYHLTLHGAGRTDSGVHAAAQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ P LN+YL I I + VD ++HARFSA R Y Y I T + Sbjct: 72 AHFEATGLIPPHRWASILNSYL--PQDILIKASAAVDNRWHARFSAAYRRYRYTIYTEER 129 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P LD ++ A + L+G+H F + S + + + Sbjct: 130 PNLFVRPFSWHYYYAPLDECLIQAALEPLMGKHHLAAFHRAGSKRSHSWVEVQAAECHRS 189 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A FL+ +R VG L VG GK T + Q + R+E APP+GL Sbjct: 190 GPFLHIEIQANGFLYGMVRLLVGMLAQVGTGKLTLAGFTELWQEERREEVKYAAPPQGLC 249 Query: 241 FDSVEY 246 V Y Sbjct: 250 LLRVGY 255 >gi|15837974|ref|NP_298662.1| tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] gi|30913418|sp|Q9PDK6|TRUA_XYLFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|9106376|gb|AAF84182.1|AE003968_13 tRNA pseudouridine synthase A [Xylella fastidiosa 9a5c] Length = 257 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 126/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RYAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFVGPLY 245 >gi|295692190|ref|YP_003600800.1| tRNA pseudouridine synthase a [Lactobacillus crispatus ST1] gi|295030296|emb|CBL49775.1| tRNA pseudouridine synthase A [Lactobacillus crispatus ST1] Length = 262 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 135/249 (54%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSM--MPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M++AAQ L+G+HDFT+F + Q + +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIENKVRTIYYVNITK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|294794578|ref|ZP_06759714.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] gi|294454908|gb|EFG23281.1| tRNA pseudouridine synthase A [Veillonella sp. 3_1_44] Length = 254 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 4/242 (1%) Query: 8 IEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+ G+Q+Q N G ++QG +E + + E + ++GA RTD+GVHA QV F Sbjct: 1 MAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQVCTFQ 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + +A+ A+ I I +L + + R++ + Y+Y I + L Sbjct: 61 TSGTIPVENIPRAMIAH--IPKDIVVLEAVEIPLDWKPRWNIYGKEYVYTIHNQLIADPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 K W + K LD + M+ A L+G HDFTT + + + P++TI V + Sbjct: 119 TKRYHWHVKKPLDIDRMQAAGNELLGTHDFTTLKGTNSTPADPVKTILGIHVKVKEAHVT 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I VV FL+ +R+ VG L VG G+ D++ L A+DR+ G AP +GL + + Sbjct: 179 ISVVGDGFLYHMVRNIVGLLVDVGLGRRKVEDIKGYLVAKDRRVIGKTAPAQGLCLEEIF 238 Query: 246 YS 247 ++ Sbjct: 239 FT 240 >gi|169350826|ref|ZP_02867764.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] gi|169292412|gb|EDS74545.1| hypothetical protein CLOSPI_01600 [Clostridium spiroforme DSM 1552] Length = 243 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R I+ Y+GS ++G+Q Q ++QG I+KA+ + E V +H +GRTD+ VH +Q Sbjct: 1 MVRVKCIVSYDGSKFYGFQIQNKLRTVQGEIQKALKKICEEEVTIHASGRTDAKVHGNKQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD +R+ +A+N +L + I IL+ V + FH+R+SA ++ Y Y + T++ Sbjct: 61 VFHFDTLRQMPEKQWKRAINHFL--PNDIYILDSLFVSEDFHSRYSATKKEYRYLLSTKE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + LD E M+ AA +G HDF +F S ++ IR + + Sbjct: 119 -YSPFETNYIYQYGRPLDLELMKDAANIFIGEHDFASFCSYDQYGNT-IRELYKILIEDN 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I +V F +R VG L VG + T L++ L ++ +++C A P+GLY Sbjct: 177 NGIITFTIVGNGFRRYMVRHIVGGLIQVGAKRITKKRLQEFLDSKGKEKCLFKAKPQGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LYEVFY 242 >gi|331085595|ref|ZP_08334679.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407482|gb|EGG86984.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 239 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 123/242 (50%), Gaps = 5/242 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M I Y+G GY GWQR N +IQG+IE+ + + G V + G+GRTD+GVHA QVAH Sbjct: 1 MTIAYDGGGYKGWQRLTNEPGTIQGTIERVLSKIEGSPVKISGSGRTDAGVHAKGQVAHA 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L P +L + LN L + I I + V + FH+R+SA+ + Y YRI R Sbjct: 61 FLKTNEDPELLRQELNRML--PEDIRICLVESVSQSFHSRYSAVSKVYEYRIDQRSRADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + P LD + MR AA HL G HDF +F + + +RTI D+ + Sbjct: 119 FTRKYCYHRPVHLDLDRMRQAADHLTGTHDFGSF--TDNKEADSVRTIFSIDMKEENEKL 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + FL+ +R G+L VG+G T + +A +DR G LAP GL V Sbjct: 177 VLAFRGDGFLYHMVRILAGTLLEVGEGIRTPESVLEAFHHRDRSLTGFLAPAHGLCLREV 236 Query: 245 EY 246 Y Sbjct: 237 NY 238 >gi|121595540|ref|YP_987436.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] gi|166228674|sp|A1WAT5|TRUA_ACISJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120607620|gb|ABM43360.1| tRNA pseudouridine synthase A [Acidovorax sp. JS42] Length = 274 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 122/259 (47%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q + +++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVSYNGQAYNGWQSQPSANTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTELQRAPFSWVRGTNTFL--PADIAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD----- 176 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHKAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 177 ---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCVPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|71274838|ref|ZP_00651126.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71902311|ref|ZP_00684298.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|170729917|ref|YP_001775350.1| tRNA pseudouridine synthase A [Xylella fastidiosa M12] gi|238687976|sp|B0U6K4|TRUA_XYLFM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|71164570|gb|EAO14284.1| tRNA pseudouridine synthase [Xylella fastidiosa Dixon] gi|71727947|gb|EAO30171.1| tRNA pseudouridine synthase [Xylella fastidiosa Ann-1] gi|167964710|gb|ACA11720.1| Pseudouridylate synthase [Xylella fastidiosa M12] Length = 257 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MMRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADASVRVVCAGRTDAGVHGQ 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 RQVRPALQHQFLSWERYPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A G Sbjct: 178 RDAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFVGPLY 245 >gi|325261709|ref|ZP_08128447.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324033163|gb|EGB94440.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 248 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQK+ ++QG +E+A+ VTG + G+GRTD GVHA Sbjct: 1 MRTYKLTVVYDGSRYQGWQRQKSTEKTVQGILERAVTEVTGRQTEIDGSGRTDGGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + C +LN L + I + + +V FHAR++A + Y Y I TR Sbjct: 61 QTASMVLPGKVEETGFCASLNNAL--PEDIRVKEMKLVKNGFHARYNAKGKRYEYFIDTR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P L+ M AA++L+G HDF F + S+ RTI + Sbjct: 119 EKPDVFTRKYCYHYPYELNIPAMEEAAEYLIGTHDFAGFTDKKDEMSTI-RTIYDIIIEK 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + FL+ +R G+L +G G+ + AL+A DR+ G LAP GL Sbjct: 178 QDSKIRMEFYGTGFLYHMVRILTGTLLEIGTGEKRPHEAAAALEAGDREYAGFLAPARGL 237 Query: 240 YFDSVEYS 247 + V Y+ Sbjct: 238 FLKEVYYN 245 >gi|217967401|ref|YP_002352907.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] gi|226708649|sp|B8E1G5|TRUA_DICTD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|217336500|gb|ACK42293.1| tRNA pseudouridine synthase A [Dictyoglomus turgidum DSM 6724] Length = 245 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 121/248 (48%), Gaps = 5/248 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y G ++G+Q+Q +IQG +EK + + E + V GAGRTD+GVHAL Q Sbjct: 1 MTNWKLEISYIGKDFYGFQKQPGKRTIQGELEKVLSFLFDEEIRVIGAGRTDTGVHALGQ 60 Query: 61 VAHFDLVRE--WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V +F + L K LN L + I I + IVD FHAR+SA RR Y+Y + Sbjct: 61 VVNFKSRGHKGFSCDKLHKVLNRLL--PEDIKIKKVEIVDDSFHARYSAKRRWYIYVVYN 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 K +W I + ++ E + +A G HDF F + + I + Sbjct: 119 NDERDLFLKDYSWWISREINRELLIFSANLFKGVHDFKNFCVTEDEDQTVI-EVYESFWY 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ + A FL +R VGS+ + G+ + +LE L+ + ++ APP G Sbjct: 178 FKKDLLIYFISAPFFLRKMVRFIVGSMVEIALGRKSLIELEDYLKEERKERFSVPAPPWG 237 Query: 239 LYFDSVEY 246 LY V+Y Sbjct: 238 LYLFRVDY 245 >gi|167752124|ref|ZP_02424251.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] gi|167660365|gb|EDS04495.1| hypothetical protein ALIPUT_00366 [Alistipes putredinis DSM 17216] Length = 390 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + YNG Y GWQRQ + S+Q +IE AI + E +++ GAGRTD+GV+A V Sbjct: 126 MRYFIELRYNGGAYCGWQRQPDMPSVQQTIEGAISTLLREPILLTGAGRTDTGVNASYYV 185 Query: 62 AHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD P + LN L I++ + V HARFSA R YR Sbjct: 186 AHFDTSSPVADPEQVVFKLNHML--PGDIAVSRIVPVAADAHARFSA--REREYRYYIEP 241 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + +W LD M AA L+ DFT+F ++ + I + D Sbjct: 242 RKNPFTRAASWQYYVPLDVAAMNRAADVLMEYEDFTSFAKLNSDNKTNICHLKRADWTVG 301 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL +R+ VG+L VG G++T + ++D AP +GL Sbjct: 302 RDGTLCFTIRADRFLRNMVRAIVGTLVDVGRGRYTVEQFRDIVASRDLSRSSAGAPAQGL 361 Query: 240 YFDSVEY 246 + V Y Sbjct: 362 FLSDVLY 368 >gi|293380407|ref|ZP_06626478.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] gi|290923090|gb|EFE00022.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 214-1] Length = 262 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSM--MPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M+IAAQ L+G+HDFT+F + Q +RTI + + Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGQIEDKVRTIYYVKITE 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S] gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S] Length = 274 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 3/244 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I Y+G+ + GW RQ ++ G +E+ + + V++ AGRTD+GVHA QVAH Sbjct: 2 RLDISYDGTDFSGWARQPGRRTVCGEVEEKLSAIVRTPVLLTVAGRTDAGVHASGQVAHV 61 Query: 65 DLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D+ + +P + + + + + +S + F ARFSAIRR Y YR+ T Sbjct: 62 DVPADMIPEEPSRLVRRLARFLPRDVRVKAVSFAPEHFDARFSAIRRHYEYRLTTAPYGA 121 Query: 124 ALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + R + PK +D + MR A+ L+G HDF F + ++ +R + FD G+ Sbjct: 122 EPLRARDTVAWPKDVDVDAMREASSRLLGLHDFAAFC-KRREGATTVRELQRFDWEQSGH 180 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + V A +F + +RS VG+ VG+G+ T + L ++R +AP GL Sbjct: 181 ELTAFVSADAFCWSMVRSLVGAALAVGEGRRTVEWMAGLLAERERASAVAVAPAHGLSLI 240 Query: 243 SVEY 246 V+Y Sbjct: 241 RVDY 244 >gi|322435303|ref|YP_004217515.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] gi|321163030|gb|ADW68735.1| tRNA pseudouridine synthase A [Acidobacterium sp. MP5ACTX9] Length = 258 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 17/260 (6%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY M + Y+G+ Y GWQ Q ++QG + A+ L+TGE V+ G+GRTD+GVHAL Q Sbjct: 1 MRYWKMTLAYDGTAYHGWQVQPGLPTVQGRLAAALKLLTGETVLPQGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR- 119 V F L L +ALN L I +L++ V+ +FHAR A+R++Y YR+ R Sbjct: 61 VVSFGLEAPIPGENLLRALNRAL--PGAIRVLSVEAVEAEFHARRGAVRKTYEYRLFPRV 118 Query: 120 -----QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA--------S 166 + + W P +D AA+ ++G HDF++F + Sbjct: 119 GVRPERICSPMLAAYVWDCPWEIDLGRAEAAARVILGEHDFSSFAASDPDRTERLSGVER 178 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 S +RT+ + L+ RVV FLH +R+ VG G+ +++ L A+D Sbjct: 179 SNVRTVYESGWSELDGLMVYRVVGNGFLHHMVRNLVGCFVDAACGRTEVSEVAGILAAKD 238 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R CG AP GL+ VEY Sbjct: 239 RTACGATAPASGLFLVGVEY 258 >gi|294624568|ref|ZP_06703244.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601141|gb|EFF45202.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 257 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCVPA--ADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ L + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPTLYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RFGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|293977793|ref|YP_003543223.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] gi|292667724|gb|ADE35359.1| pseudouridylate synthase I [Candidatus Sulcia muelleri DMIN] Length = 250 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + + + + I I+N+ V K+ HARF+AI R Y YRI + Sbjct: 61 AHFEFYEKKILLYRNFLFKLNSFLPLNIKIINIFPVKKKIHARFTAISRVYEYRISLGKN 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +L L N A+ L D+++F C + I I + + Sbjct: 121 PFSLSWQWLSKQKIKLKPLN--KGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKN 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL+ Sbjct: 179 NILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNLALISAPAKGLFL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 TKINY 243 >gi|310658388|ref|YP_003936109.1| tRNA pseudouridine synthase a [Clostridium sticklandii DSM 519] gi|308825166|emb|CBH21204.1| tRNA pseudouridine synthase A 2 (tRNA-uridine isomerase I 2) (tRNA pseudouridylate synthase I 2) [Clostridium sticklandii] Length = 245 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 118/247 (47%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + ++Y G+ Y GWQR K+ ++IQG +E + +T E V V G RTD GVHA Sbjct: 1 MRNIKIALQYEGTRYLGWQRLKDQDNTIQGKLEDLLNKMTDEEVQVIGCSRTDKGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +A+F + + +N YL + I + + D +FHAR +A + Y + I Sbjct: 61 LIANFHTNSKMTLHEIQTYMNYYL--PEDIRVTYIEEADDKFHARHNAKTKVYRFTIDNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A PK LD + M AA +L+G HD+ F ++ + S ++I + Sbjct: 119 SFADVFTRKTAIHQPKQLDIKAMEKAANYLIGTHDYDAFTTMKSKKKSCRKSIKSIAITK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 N + + FLH IR G+L VG G+ + +L L ++DR GP+ +GL Sbjct: 179 KNNYVYLEFEGEGFLHNMIRIITGTLIRVGTGEISPEELANILASKDRSLSGPMVEGKGL 238 Query: 240 YFDSVEY 246 V Y Sbjct: 239 MLMQVNY 245 >gi|289449823|ref|YP_003475752.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184370|gb|ADC90795.1| tRNA pseudouridine synthase A [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 274 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 7/251 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ E++G+ Y GWQ Q N +IQ +++KA+ + + V+V+G RTD+GVHA Sbjct: 1 MKRNIAILTEWDGTAYGGWQIQANAPTIQENLQKALEKLCHKSVLVNGCSRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V++F + ALNA L + I++ + + F+ARF A + Y Y I Sbjct: 61 HVSNFHFDSSIPVANIPLALNAML--PEDIAVQAATEMPLDFNARFDACGKQYSYYICNT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--- 176 + AL + + L MR AA ++ G HDF F + Q S +RT+ D Sbjct: 119 KLRHALYSRYSCCEARPLSAAAMREAAGYIEGTHDFACFMASGGQVKSTVRTVYSVDLVS 178 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G + I V FL+ +R G+L VG K D+ + L++ R E G P Sbjct: 179 YPICGGAIWRIIVRGNGFLYNMVRIIAGTLLYVGLNKLNPQDVREVLRSGHRSEAGKTLP 238 Query: 236 PEGLYFDSVEY 246 GL+ D V Y Sbjct: 239 ACGLFLDRVFY 249 >gi|149926375|ref|ZP_01914636.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] gi|149824738|gb|EDM83952.1| tRNA pseudouridine synthase A [Limnobacter sp. MED105] Length = 254 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 127/246 (51%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q +G ++Q + KAI + E + + AGRTD+GVHA +Q Sbjct: 1 MNRVVLGLCYDGHEFEGWQTQPHGRTVQDYLTKAIEAIAQEPIALTCAGRTDTGVHARQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD E K +N L +IS+ +D FHARFSA+ R+Y Y + Sbjct: 61 VVHFDTAAERPLTAWVKGVNNSL--PSSISVQGAKQIDSGFHARFSAVSRTYRYYFYSAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 K + LD MR AA L+G HDF+ FR+ CQA+SP+RT+ ++ Sbjct: 119 VRDPF-KRFMTWVHYPLDLAAMRRAAVCLLGTHDFSAFRASQCQAASPVRTLYALNLIEA 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + +FLH +R+ +GSL VG + + L+ L +++R P +GL Sbjct: 178 DDHCYFEIHGNAFLHHMVRNLMGSLMEVGQHRQSEAWLQDVLVSKNRSLAAKTYPAQGLS 237 Query: 241 FDSVEY 246 ++EY Sbjct: 238 LWNIEY 243 >gi|78048428|ref|YP_364603.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325924659|ref|ZP_08186097.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] gi|123743895|sp|Q3BRL0|TRUA_XANC5 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78036858|emb|CAJ24551.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325544865|gb|EGD16210.1| pseudouridylate synthase I [Xanthomonas perforans 91-118] Length = 257 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCVPA--ADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|294666793|ref|ZP_06732027.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603454|gb|EFF46871.1| tRNA pseudouridine synthase A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 257 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 131/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCVPA--ADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 FG ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RFGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|172038954|ref|YP_001805455.1| tRNA pseudouridine synthase A [Cyanothece sp. ATCC 51142] gi|171700408|gb|ACB53389.1| tRNA pseudouridine synthase [Cyanothece sp. ATCC 51142] Length = 286 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G + GWQRQ ++Q IE +I V G V +HGAGRTD+GVHA QV Sbjct: 11 KRVALVIQYQGGRFHGWQRQPTQRTVQEDIETSIAQVLGYHVPIHGAGRTDAGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V P LN L D I + + V +HARFSA+ R Y Y T + Sbjct: 71 AHFDDVSPIPPQRWADILNQRL--PDDILVRGSAEVPLTWHARFSALWRRYRYTFYTDKC 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + L+ E M A L+GRH FR + + Sbjct: 129 PNLFVSPFSWHYYYEPLEVELMTKALNPLLGRHHLAAFRRAGSKRHHSWVEVQETQCYRQ 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R VG L VG GK + + + Q Q R++ AP +GL Sbjct: 189 GPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLANFTEIWQHQQREQVKYSAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|256849152|ref|ZP_05554585.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|262047168|ref|ZP_06020126.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] gi|256713928|gb|EEU28916.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-1A-US] gi|260572413|gb|EEX28975.1| tRNA pseudouridine synthase A [Lactobacillus crispatus MV-3A-US] Length = 262 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSM--MPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITE 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DKKDNEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|307544826|ref|YP_003897305.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] gi|307216850|emb|CBV42120.1| tRNA pseudouridine synthase A [Halomonas elongata DSM 2581] Length = 292 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 93/239 (38%), Positives = 132/239 (55%), Gaps = 2/239 (0%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV 67 +EY+GS Y GWQR K+ +S+Q S+E+A+ V G V VH +GRTDSGVHA RQ+ HFD Sbjct: 3 VEYDGSQYCGWQRLKHAASVQASLEQALSRVAGAPVRVHASGRTDSGVHATRQIVHFDPP 62 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 NA L I++ + V + FHARF A+ R Y Y ++ + + LE+ Sbjct: 63 APRSEKAWVFGANANL--PRDIAVRWVMPVGEDFHARFKALARRYRYVLLNQPSRPVLER 120 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 LD E M AAQ LVG HDF++FR+ CQ+ +P R + +V+ G L+ + Sbjct: 121 ANVTWCRDPLDAEAMHEAAQVLVGEHDFSSFRAAGCQSKTPWRHLHFIEVHRHGPLVVVD 180 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V +FLH IR+ G+L VG G+ + L + L +DR + AP GL+F Y Sbjct: 181 VQGNAFLHHMIRNIAGALVTVGRGEQGADYLARLLALRDRTQGDVTAPACGLHFVDSLY 239 >gi|227494575|ref|ZP_03924891.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] gi|226832309|gb|EEH64692.1| tRNA-pseudouridine synthase I [Actinomyces coleocanis DSM 15436] Length = 302 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 136/264 (51%), Gaps = 20/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + Y G+ + GW +Q ++QG++E+A+ LV E V + AGRTD+GVHA Q Sbjct: 1 MRFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQT 60 Query: 62 AHFDLVRE------------WVPVILCKALNAYLKIS-------DTISILNLSIVDKQFH 102 AHFD+ + L + LN ++ + + + ++ V F Sbjct: 61 AHFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVFD 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARF+A+RR Y+YR+ L W + + L MR AA+ LVG HDF +F Sbjct: 121 ARFAALRRHYVYRVADVAGRNPLYAESVWWVEEPLQIHLMREAARALVGEHDFLSFCKPR 180 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + +S IRT++ D+ +E+R+ A +F H+ +RS VG+L VG G+ T + + Sbjct: 181 -EGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIADLV 239 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 R++ PLAPP GL +V+Y Sbjct: 240 AFPSREQAAPLAPPHGLTLRAVDY 263 >gi|166712630|ref|ZP_02243837.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 257 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCV--PTAADFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQTIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIAMLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|21243447|ref|NP_643029.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] gi|30913394|sp|Q8PJ25|TRUA_XANAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21109001|gb|AAM37565.1| tRNA pseudouridine synthase A [Xanthomonas axonopodis pv. citri str. 306] Length = 257 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCVPA--ADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDADAMHGAAQALLGENDFSAFRSVQCQALHARRHLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|313897268|ref|ZP_07830812.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] gi|312957989|gb|EFR39613.1| tRNA pseudouridine synthase A [Clostridium sp. HGF2] Length = 252 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 109/247 (44%), Gaps = 2/247 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + + Y+G+ Y GWQRQ N SIQ IE A+ + G + + +GRTD+ VHAL Q Sbjct: 1 MPRYKVTLSYDGTAYGGWQRQTNTHSIQQEIEAAMEKIEGNFIRITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ++ P +ALN+ L I I ++ +V+ FHARF A+ + Y Y I T Sbjct: 61 VFHFDSAKDLAPENWRRALNSLL--PHDIRIQDVCLVEDDFHARFHAVSKRYDYLITTDV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A L + S S ++TI D+ Sbjct: 119 NNPFYYHYMGKDRKVLDVKRMSECARVFLGTHDFTSFTSSKLDPRKSKVKTITRLDIVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + FL +R +L G + D+++ L QD+ C A EGLY Sbjct: 179 EHAVRLVFEGNGFLRYMVRMIAQTLIEAGKHRLDVADVKQMLYGQDKHLCRYKAQAEGLY 238 Query: 241 FDSVEYS 247 V Y+ Sbjct: 239 LVHVTYA 245 >gi|289663172|ref|ZP_06484753.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 257 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + V FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCV--PVADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|282601160|ref|ZP_05980960.2| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] gi|282570067|gb|EFB75602.1| tRNA pseudouridine synthase A [Subdoligranulum variabile DSM 15176] Length = 249 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 116/248 (46%), Gaps = 5/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + I Y G+ Y G+Q Q N ++ ++ A+ V G V G RTD+GVHA R Sbjct: 1 MTYLLWITYKGTNYAGFQVQPNAPTVCAVLQDAMQAVLGSRPDVKGCSRTDAGVHARRFA 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + ALNA+L I L + V + FHAR++A ++Y Y I+ + Sbjct: 61 LSFCYTGRVPAEKIVPALNAHL--PPDIRALAVQAVPEGFHARYAAHEKTYCYHILNARI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP---IRTIDHFDVN 178 + + LD M+ AA VG HDF + ++ +RTI V+ Sbjct: 119 DDPFTLDTCHRVAQPLDLAAMQAAAAQFVGTHDFLALCASGSSVAAHGDTVRTISRCTVS 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ I V A +L+ +R G+L G K T + LQ++DR++ GP P +G Sbjct: 179 RCGDRFVITVTADGYLYNMVRILAGTLVEAGLHKRTPDSIPALLQSRDRRQAGPTLPAKG 238 Query: 239 LYFDSVEY 246 L+ + V Y Sbjct: 239 LFLEDVAY 246 >gi|58582878|ref|YP_201894.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624740|ref|YP_452112.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577717|ref|YP_001914646.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] gi|62901158|sp|Q5GXR2|TRUA_XANOR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123766543|sp|Q2P0T9|TRUA_XANOM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689565|sp|B2SVP0|TRUA_XANOP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58427472|gb|AAW76509.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368680|dbj|BAE69838.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522169|gb|ACD60114.1| tRNA pseudouridine synthase A [Xanthomonas oryzae pv. oryzae PXO99A] Length = 257 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 131/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADAPVQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + + FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDAHREPRGWMLGTTARLPPSIAVRWCVPA--AADFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M +AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDADAMHVAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGEQPADWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|297180263|gb|ADI16482.1| pseudouridylate synthase [uncultured bacterium HF4000_05M23] Length = 273 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ +++EY+G+ + G Q Q N ++QG IE A+ + E + VH A RTDSGVHA QV Sbjct: 1 MRFGLVVEYDGTNFHGSQLQSNARTVQGEIESALLQIFSEKIRVHFASRTDSGVHARGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQ 120 FD + P + KALN + I L F R A R+Y+Y Sbjct: 61 GRFDAETDMPPDQIRKALNFHTTTDVRIRCAQLVEDGPDGFDPRGDASARTYVYTFNDAP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL++ + K LD M A+Q LVG + + +R ++ Sbjct: 121 SEPALDRHYVTHVRKPLDEIAMNDASQALVGLHDFASFAGPKAPHDALTMRNVETASTTR 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ IE ++ A +FLH QIR G L VG G + L +R + P +GL Sbjct: 181 IGDSIEFKITANAFLHQQIRRIAGVLCDVGTGGSPVAVVGDLLATAERGAASHVMPAQGL 240 Query: 240 YFDSVEY 246 + + Y Sbjct: 241 CLEKIAY 247 >gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 259 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 88/258 (34%), Positives = 123/258 (47%), Gaps = 15/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R ++I Y G+GY GWQ Q K ++QG++E A+ + G+ V VHG+GRTDSGVHA Sbjct: 1 MRLKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAGKAVRVHGSGRTDSGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + +LNA L I +L+ S FHAR A+R++Y Y+ Sbjct: 61 GQVAHCDIPDTRAGLDWRHSLNAVL--PRDIRVLDASPAAPDFHARKDALRKTYAYQFWQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----- 173 + L LD + MR A L+GRHDF R+ S RTI Sbjct: 119 DRRFLPPHVRPYVWNCGMLDLDAMRDALPFLLGRHDFAGLRNAGTDVESTERTIMDARLD 178 Query: 174 ----HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 ++ + + A FL +R+ G L G GK + L A+DR+ Sbjct: 179 ALAPCEYYPPHAPMLRLTITADGFLKQMVRNVAGLLAACGQGKIQPAQIPALLAARDRQA 238 Query: 230 CG-PLAPPEGLYFDSVEY 246 APPEGL SV+Y Sbjct: 239 VPSVTAPPEGLALVSVKY 256 >gi|307154816|ref|YP_003890200.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] gi|306985044|gb|ADN16925.1| tRNA pseudouridine synthase A [Cyanothece sp. PCC 7822] Length = 284 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ N ++Q IE AI V G + +HGAGRTD+GVHA QV Sbjct: 11 QRVALVIQYLGTHFHGWQRQPNRRTVQEEIETAIAQVLGYPITLHGAGRTDAGVHAAAQV 70 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + P LN+ L D I + V +HARFSA+ R Y Y I T + Sbjct: 71 AHFDQMSLIPPYRWATILNSRL--PDDIVVRASHKVCDTWHARFSALWRRYRYTIYTDKQ 128 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + L M+ A + L+G+H F + + + Sbjct: 129 PNLFVKPFSWHYYQYPLSESLMQAALEPLLGKHHLAAFHRANSARTHSWVEVQAVQCYRS 188 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I + + A FL+ +R +G L VG+ + + ++ + Q R+E AP +GL Sbjct: 189 GPFIHVEIQANGFLYGMVRLLMGMLIEVGNQQRSLSEFTNIWKNQRREEVKYAAPAKGLC 248 Query: 241 FDSVEY 246 V Y Sbjct: 249 LLRVGY 254 >gi|86606117|ref|YP_474880.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] gi|86554659|gb|ABC99617.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-3-3Ab] Length = 287 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 121/248 (48%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GSG+ GWQRQ ++QG +E+AI L G V ++GAGRTD+GVHA QV Sbjct: 4 RRIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P + LN L + + +L + V +HARFSA R Y Y I+ R+ Sbjct: 64 AHFDTTSGIPPTEWARVLNDCL--PEDVVVLASAQVPDFWHARFSARWRRYRYLILNREL 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W + L E M A L+G H FR + G Sbjct: 122 PDVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGL 239 +LI I V A FL+ +R VGSL++VG G+ + Q D R APP+GL Sbjct: 182 DLISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGL 241 Query: 240 YFDSVEYS 247 V Y+ Sbjct: 242 CLVDVGYA 249 >gi|119383286|ref|YP_914342.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] gi|166228744|sp|A1AZF2|TRUA_PARDP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119373053|gb|ABL68646.1| tRNA pseudouridine synthase A [Paracoccus denitrificans PD1222] Length = 261 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 119/253 (47%), Positives = 158/253 (62%), Gaps = 8/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHA 57 M R+ ++IEY+GS + GWQ Q S+Q +IE A+ + + AGRTD+GVHA Sbjct: 1 MPRFALLIEYDGSPFAGWQAQAERPSVQSTIEAALGRLDPGFAAGARIAAAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL R+W P L +ALN +LK ++IL + V FHARFSA R YL+R++ Sbjct: 61 TGQVAHADLARDWDPFRLSEALNWHLK-PAPVAILAAARVADDFHARFSAHERRYLFRLV 119 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R+APL ++GRAW +P LD MR A HL+GRHDFTTFRS CQA+SP++T+D + Sbjct: 120 ARRAPLTHDRGRAWQVPHRLDLAAMRAGAAHLLGRHDFTTFRSTMCQANSPVKTLDELTI 179 Query: 178 N----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G + ARSFLH Q+RS VG+L+ VG G W + +AL A DR CGP+ Sbjct: 180 DEAEIPQGREYRFFLRARSFLHNQVRSIVGTLERVGAGAWPPGRVAEALAACDRAACGPV 239 Query: 234 APPEGLYFDSVEY 246 PP+GLY V Y Sbjct: 240 CPPQGLYLTGVGY 252 >gi|329894995|ref|ZP_08270775.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] gi|328922563|gb|EGG29899.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC3088] Length = 274 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 121/244 (49%), Gaps = 3/244 (1%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +EYNGS + GWQRQ ++Q ++E A+ + V V AGRTDSGVHA QV Sbjct: 14 LALAVEYNGSLFHGWQRQGGTDQTVQATLEAALSQIANHDVRVACAGRTDSGVHATSQVV 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 F NA L T+ + V +FHARFSAI+R+Y Y ++ Sbjct: 74 SFKAPVSRSLKAWVVGSNAVL--PPTVRVHWACAVPDEFHARFSAIQRTYRYVWCVQEVR 131 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + +L + M AAQ L+G DF+ FR+ CQ+++P R + V G Sbjct: 132 PTSLLKQVTWSRNALCSQTMNEAAQSLLGEQDFSAFRAASCQSNTPFREVQAVSVVGRGP 191 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + + + A +FLH +R+ GSL LVG G + + LQ +DR A P+GLY Sbjct: 192 FVVMEIRANAFLHHMVRNIAGSLSLVGRGLKPVDWIAQLLQGKDRTVAADTASPDGLYLT 251 Query: 243 SVEY 246 SV Y Sbjct: 252 SVAY 255 >gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121] Length = 294 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + ++ G IE + V V + AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRRPVQLTVAGRTDAGVHATGQV 80 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ E +P + + + + + +S+V F ARFSA+RR Y YR+ Sbjct: 81 AHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAMRRYYEYRVTNAA 140 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + R + D M+ A+ L+G H+F F + ++ +R + FD Sbjct: 141 FGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFC-KRREGATTVRELQRFDWTQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP GL Sbjct: 200 VGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETSRSSSILVAPAHGL 259 Query: 240 YFDSVEY 246 V+Y Sbjct: 260 SLVRVDY 266 >gi|284929586|ref|YP_003422108.1| pseudouridylate synthase I [cyanobacterium UCYN-A] gi|284810030|gb|ADB95727.1| pseudouridylate synthase I [cyanobacterium UCYN-A] Length = 281 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 114/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +II+Y+G+ + GWQRQ ++Q IE I G V +HGAGRTD+GVHA QV Sbjct: 12 KRIALIIQYSGNRFHGWQRQPYRRTVQADIENTITKSLGYKVSIHGAGRTDAGVHATGQV 71 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD P L + LN YL + I I N V +HARFSA R Y Y + T Sbjct: 72 AHFDYAGPIPPKSLARVLNRYL--PEDILIRNSKEVSINWHARFSAQWRRYRYTLYTNND 129 Query: 122 PLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L K +W + M A + L+G H T FR Q + I + Sbjct: 130 CNLLIKSYSWHYYRYPLKVKSMLDALKSLLGTHHLTAFRKKGSQRNHSWVEIQDVECYRK 189 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R +G L VG K + + + + Q R+ AP GL Sbjct: 190 GAFIHIEIQANGFLYGMVRLLMGMLVEVGIDKLSLANFNQIWRDQKREYVRHSAPANGLC 249 Query: 241 FDSVEY 246 V Y Sbjct: 250 LLGVGY 255 >gi|260576677|ref|ZP_05844664.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] gi|259021162|gb|EEW24471.1| tRNA pseudouridine synthase A [Rhodobacter sp. SW2] Length = 257 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 113/251 (45%), Positives = 152/251 (60%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M RY + IEY+G+ + GWQRQ S+Q ++E A+ + V AGRTD+GVHA Sbjct: 1 MPRYALKIEYDGTPFQGWQRQAPGQPSVQAALEAALARLQPGEHTVAAAGRTDAGVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL REW L A+NA+L+ + + D FHARFSA R YL+R++TR Sbjct: 61 QVAHCDLDREWDTFRLAGAINAWLRPDPVAVLAVARVAD-DFHARFSARERRYLFRLVTR 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT----IDHF 175 +AP+ ++GR W +P+ LD MR A HL+G+HDFTTFR+ CQA+SP++T Sbjct: 120 RAPVTHDRGRVWQLPQPLDAGLMRQGAAHLIGKHDFTTFRAALCQAASPVKTLDEIAIET 179 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G I + ARSFLH Q+RS +G+L VG G W + +AL A+DR CGP+ P Sbjct: 180 RDYPEGQEIRFTLRARSFLHNQVRSIIGTLAQVGAGHWPPERVAEALAARDRAACGPVCP 239 Query: 236 PEGLYFDSVEY 246 P+GLY V Y Sbjct: 240 PQGLYLAGVGY 250 >gi|294340919|emb|CAZ89314.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) (PSU-I) [Thiomonas sp. 3As] Length = 257 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 1/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M + Y G+ Y GWQ Q G +Q +E+A+ G AGRTD+GVHAL QV H D Sbjct: 1 MGLSYGGTSYCGWQSQPGGCGVQDFLERALAQFLGFPTRTVCAGRTDAGVHALGQVVHLD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + P + +NA+L + + + + F AR SA +R Y Y + AL Sbjct: 61 TPLQREPSSWVRGVNAFLPRDMAVQ-WARTDLPQTFDARRSAYQRRYRYVLRNHPVRPAL 119 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + LD + +R+AAQ L+G HDF+ FRS CQA SP++T+ ++ G+ + Sbjct: 120 DFAKVGWTHRPLDLDLLRLAAQCLLGEHDFSAFRSSECQALSPVKTLHAIEIARHGHTLV 179 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A +FLH +R+ VGSL VG+G + L + L ++DR+ P P+GLYF + Sbjct: 180 LDLRANAFLHHMVRNIVGSLLAVGNGSKPVSWLAEVLASRDRRLAAPTFMPDGLYFLGPD 239 Query: 246 Y 246 Y Sbjct: 240 Y 240 >gi|284035717|ref|YP_003385647.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] gi|283815010|gb|ADB36848.1| tRNA pseudouridine synthase A [Spirosoma linguale DSM 74] Length = 252 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 4/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ Y GWQ Q NG SIQ ++E A+ G+ V + G+GRTD+GVHA +Q Sbjct: 1 MRYFIELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQF 60 Query: 62 AHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD + L +LN L + I+I + V + HARFSAI R Y Y I ++ Sbjct: 61 AHFDSEEPLDITESLIYSLNCML--PEDIAIHAIFPVSDKTHARFSAISRYYQYHITRQK 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++D N L + + ++ + + + Sbjct: 119 DAFQGTLTYHFRPQLNVDRMN-EACTLLLRHTNFQSFSKARANVTHFHCQLEFAYWRYTN 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + A FL +R+ VG++ +G + + EK + A+DRK G AP GLY Sbjct: 178 VDCLTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANGLY 237 Query: 241 FDSVEY 246 V Y Sbjct: 238 LVEVGY 243 >gi|282857331|ref|ZP_06266568.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] gi|282584831|gb|EFB90162.1| tRNA pseudouridine synthase A [Pyramidobacter piscolens W5455] Length = 247 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I Y+G + GWQ Q NG+++Q S+E+ + L+ G V V GAGRTD+GVHA Q Sbjct: 1 MPRYSCVISYDGGKFCGWQTQPNGATVQESLERVLSLLNGSPVKVTGAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A F L REW P L ALNA + + ++ ++ F AR A+ R Y + + Sbjct: 61 TASFLLDREWEPRRLLLALNA--NLPEGAAVASVRERPIGFDARRDALWREYAFFVWRGP 118 Query: 121 APLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + K W D + +R L GRHDF+ F + +R + Sbjct: 119 FCYPMMKPYVWWKKKDDWDHDLIRRGCALLEGRHDFSAFCRAGDLPENAVRRMHFVRYIR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L R+ +FL +R +G+L V G+ T + LE L R + APP GL Sbjct: 179 RGRLSAFRIRGDAFLTNMVRIMIGNLDAVASGRRTLSWLEGLLDGASRGDSAMTAPPNGL 238 Query: 240 YFDSVEY 246 +F V Y Sbjct: 239 FFWKVGY 245 >gi|33862089|ref|NP_893650.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|42559755|sp|Q7TU31|TRUA_PROMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33634307|emb|CAE19992.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 268 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 125/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++I+Y+GS + GWQRQKN S+Q +IE +F ++ +I+ +GRTD+GVHA Q Sbjct: 1 MKRVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ LN+ L TI IL V +HA +SA+ R Y Y I + Sbjct: 61 VIHFDIDFLIPIDRYADVLNSRL--PHTIRILESVEVKSSWHACYSAVYRHYRYVINNNK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L K K LD +M IA ++G HDF F+ S+ + TI + Sbjct: 119 IPNLFLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLER 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI I + A FL+ +RS VG L LVG+ K T + + + + AP +GL Sbjct: 179 TEDLILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNSVY 245 >gi|256844460|ref|ZP_05549946.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] gi|256613538|gb|EEU18741.1| tRNA pseudouridine synthase A [Lactobacillus crispatus 125-2-CHN] Length = 262 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V +GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGQRVIVQVSGRTDAGVHAVGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD + +P + A+N+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKTIPANRMILAMNSM--MPTDIIFDDCQIVDENFHARYSIKGKWYRYRVSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E M++AAQ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 HFVNPFKRFYTGHFPYPLDIEKMQVAAQDLLGKHDFTSFAASGGQIEDKVRTIYYINITK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL++ + A+DR+E A Sbjct: 181 DEKENEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPIHDLQRVIAAKDRQEVRQTAHAS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|209965580|ref|YP_002298495.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] gi|238057735|sp|B6IPI0|TRUA_RHOCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|209959046|gb|ACI99682.1| tRNA pseudouridine synthase A [Rhodospirillum centenum SW] Length = 245 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +EY+G + GWQRQ NG S+Q ++E+AI+ T E V V AGRTD+GVHAL Sbjct: 1 MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA DL RE + ALN +LK +++L + V FHARFS + R+YLYRI+ R+ Sbjct: 61 VASVDLAREATADKVQAALNFHLK-PHPVAVLRVEPVAPDFHARFSCLGRAYLYRILNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE GR W + LD E M AAQ LVG+HDF++FR+ CQA SP++T+ V Sbjct: 120 APAALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQAKSPVKTLSDLSVARV 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I ARSFLH Q+R+ VG+LKLVG+G+WT+ D+ +AL A++R GP AP GLY Sbjct: 180 GEEVRIVARARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARNRSAAGPTAPAAGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FTEAWY 245 >gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Spirochaeta coccoides DSM 17374] Length = 299 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 131/251 (52%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R M + Y+G+GY GWQ Q+N S+Q IE A++ +TG V V G+GRTDSGVHAL QV Sbjct: 20 RRVRMTVAYDGTGYSGWQHQRNAPSVQAEIEDALYRLTGHSVTVVGSGRTDSGVHALGQV 79 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 HFDL E P V+ +ALNA+L I I++ + FHARFSA+ R Y Y I Sbjct: 80 CHFDLPDERFPAVVFKRALNAFL--PPAIRIMDSEETNDSFHARFSAMAREYRYLIKREA 137 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + GR W++ + E ++ A + G HDFTTF + R I D + Sbjct: 138 DMTPFDSGRVWVVKELPSLELLKAHAAEIAGTHDFTTFTAAGDMCERRHRDIYVSDFSVE 197 Query: 181 GNLI-----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ + +FL+ +RS VG+L + G +T+ + L A+DR + G A Sbjct: 198 KDIHGAEVLVYTICGNAFLYKMVRSIVGTLFFLVLGGVPATETARRLAARDRSQAGRTAS 257 Query: 236 PEGLYFDSVEY 246 GLY + + Sbjct: 258 AHGLYLSRISF 268 >gi|304440310|ref|ZP_07400199.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371062|gb|EFM24679.1| tRNA pseudouridine synthase A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 247 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I Y+G+ ++G+Q+Q G +I+ + KA+ V + +GRTDSGVHA Q Sbjct: 1 MNIRIKITYDGTNFYGFQKQDRGRTIEKVLTKAVENTVKHPVKLFYSGRTDSGVHAFGQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F L K +N +L IS++ VD FH+R+SA + Y Y I + Sbjct: 61 ANFYTESTIDIGNLPKVINYHL--PTDISVVEAKYVDDNFHSRYSAKGKFYRYIIYNNKY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + RAW P +D E + + +LVG HDF +F + IR I +VN G Sbjct: 119 RNALFENRAWQYPHKIDMEILEKSLSYLVGEHDFKSFMGRYATVKDTIRIIHKIEVNKVG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++I I +SFL +R VG+ + + ++AL ++R G AP GLY Sbjct: 179 DVINIDFYGKSFLKNMVRIIVGTSVQISSKNKSPEITKEALVRKERISAGMTAPACGLYL 238 Query: 242 DSVEY 246 V + Sbjct: 239 MDVYF 243 >gi|58336660|ref|YP_193245.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227903218|ref|ZP_04021023.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] gi|62901152|sp|Q5FM60|TRUA_LACAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|58253977|gb|AAV42214.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus NCFM] gi|227869023|gb|EEJ76444.1| tRNA pseudouridine synthase A [Lactobacillus acidophilus ATCC 4796] Length = 262 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 132/249 (53%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 RY M + Y+G + G+Q Q + ++QG++E A+ +T G+ ++V G+GRTD+GVHA+ Q Sbjct: 3 TRYKMTMAYDGHLFHGFQLQPDQRTVQGTVEDALKKMTKGKRIIVQGSGRTDAGVHAIGQ 62 Query: 61 VAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V HFD +E + ALN+ + I + IVD+ FHAR+S + Y YR+ Sbjct: 63 VIHFDYPGKEIPANRMILALNSM--MPTDIVFTDCQIVDEDFHARYSIKGKWYRYRLSLD 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ P LD E MRIAAQ L+G+HDFT+F + Q +RTI + ++ Sbjct: 121 YFVNPFKRFYTGHFPYQLDLEKMRIAAQDLLGKHDFTSFAASGGQIKDKVRTIYYINITK 180 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E + FL+ +R V +L +G+ + DL + + A+DR+E A Sbjct: 181 DEKENEIVFDFIGSGFLYNMVRIMVAALLEIGNERRPLHDLRRVIAAKDRQEVRQTAQGS 240 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 241 GLYLYHVFY 249 >gi|122919612|pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 gi|122919613|pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 122/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ + ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ + +ALN L + + ++ V FHAR A+ R+Y YRI+ R Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + RA + + LD E M A L+GRH+F F + V Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAE 177 Query: 180 FGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +E+ +SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 238 GLYFVEAAY 246 >gi|46199569|ref|YP_005236.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55981600|ref|YP_144897.1| tRNA pseudouridine synthase A [Thermus thermophilus HB8] gi|51316686|sp|Q72I65|TRUA_THET2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62901217|sp|Q5SHU9|TRUA_THET8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46197195|gb|AAS81609.1| tRNA pseudouridine synthase A [Thermus thermophilus HB27] gi|55773013|dbj|BAD71454.1| tRNA pseudouridine synthase A (pseudouridylate synthase I) [Thermus thermophilus HB8] Length = 253 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 122/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ + ++QG +E+A+ + G + AGRTD+GVHAL Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ + +ALN L + + ++ V FHAR A+ R+Y YRI+ R Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + RA + + LD E M A L+GRH+F F + V Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAE 177 Query: 180 FGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +E+ +SFL Q+R VG+L VG GK L+ L+ DR+ GP AP Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 238 GLYFVEAAY 246 >gi|290968602|ref|ZP_06560140.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] gi|290781255|gb|EFD93845.1| tRNA pseudouridine synthase A [Megasphaera genomosp. type_1 str. 28L] Length = 264 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 C+I+ Y+G+ + G+QRQ N SSIQ IE+A+ + E + V+GA RTD+GVHA QV Sbjct: 5 KNICLIVAYDGTDFHGFQRQTNASSIQQYIEEALTRIFQEPITVYGAARTDAGVHARGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + A+ AYL TI++L + F R + Y YRI+ R Sbjct: 65 VNFYASGSIPVDKIPYAMKAYL--PPTIAVLQAREMASHFSVRHDNCGKHYCYRIVNRAV 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W I K LD E MR A L+G HDF+ F + +PI+T+ + Sbjct: 123 PDPFQLRYSWFIRKPLDVEAMRQGANILLGTHDFSAFEGKNTTPMNPIKTMYAVQIQKNR 182 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +EI V+ FL+ +R+ G L +G ++T+ + L+ DRK+ G AP GL Sbjct: 183 DNVEIHVIGDGFLYHMVRNMAGGLADIGLHRFTTIHFRRILKGLDRKKLGATAPAGGLCL 242 Query: 242 DSVEYS 247 + V Y+ Sbjct: 243 EEVFYT 248 >gi|262341374|ref|YP_003284229.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272711|gb|ACY40619.1| tRNA pseudouridine synthase A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 247 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 128/246 (52%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + + YNG ++GWQ QK S+++G++E + + E + V GAGRTD GVHA + Sbjct: 1 MRFFIELAYNGKYFYGWQVQKKVSTVEGNLEYCLSKLLKESINVIGAGRTDKGVHAKQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + ++ K LN +L +I +LN+ V + HARF+A +Y+ + Sbjct: 61 AHFDYKGKISNNLIKK-LNVFL--PKSIKVLNIFPVKENIHARFNA--IKRIYKYYLVRD 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNSF 180 + +W L+ + M IA++ L+G DF++F + + I ++H + Sbjct: 116 KNPFYQDFSWHCFYPLNIQRMNIASKKLMGHKDFSSFCKKKTFETRNNICKVNHVCWSVN 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N+ + A FL + +RS +G+L VG K + + + +++++ C + P GL+ Sbjct: 176 NNVFCFTIEANRFLRSMVRSIIGTLIDVGRNKISVNEFSEIIESKNSNFCKSIVPACGLF 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LTRILY 241 >gi|294678738|ref|YP_003579353.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] gi|294477558|gb|ADE86946.1| tRNA pseudouridine synthase A [Rhodobacter capsulatus SB 1003] Length = 255 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 111/250 (44%), Positives = 155/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ IEY+G + GWQRQ S+QG++E A+ + + AGRTD+GVHA Q Sbjct: 1 MPRFAFRIEYDGGPFAGWQRQAVLPSVQGAVEAALARLEPGEHTIAAAGRTDAGVHATAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL ++W P L +ALN +L+ D ++I+ + V FHARFSA R YL+R+++R+ Sbjct: 61 VAHADLAKDWDPFRLSEALNHHLR-PDPVAIVACARVGDDFHARFSARERRYLFRLVSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 AP+ ++G+ W + LD MR A L+G HDFTTFR+ CQA SP++T+D + Sbjct: 120 APVVHDRGKVWQVQNPLDVAAMREGAAQLIGLHDFTTFRAAMCQAKSPVKTLDEITIEEI 179 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 G + ARSFLH Q+RS VG+L+ VG G W D+ +AL A+DR CGP+ PP Sbjct: 180 ALPSGREYRFHLRARSFLHNQVRSIVGTLERVGAGAWAPEDVGRALAARDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 240 QGLYLCGVGY 249 >gi|319950123|ref|ZP_08024062.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] gi|319436208|gb|EFV91389.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4] Length = 380 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 73/262 (27%), Positives = 113/262 (43%), Gaps = 17/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW RQ ++ G +E + V VV+ AGRTD+GVHA QV Sbjct: 4 RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELSTVLRHPVVLTVAGRTDAGVHARAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRSYLYR 115 H D+ W+ L I++++ V +F ARFSA+RR Y YR Sbjct: 64 CHLDVDPAWLDQRSLDGRPEALVRRLARLLPADIAVMDGRWVPDEFDARFSALRRHYEYR 123 Query: 116 IIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ-------ASS 167 + T + ++ D E +R A++ L+G HDF F Sbjct: 124 LTTAPWGAEPIRARDTAAWTRTADLEAVRAASERLLGLHDFAAFCRRREGATTIRELQRF 183 Query: 168 PIRTIDH---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 RT D + V A +F + +RS VG++ VG+G+ + + L Sbjct: 184 EWRTEPDPRGPDAPGAAEVWTASVSADAFCWSMVRSLVGAVMAVGEGRRSLEWISGLLAE 243 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 +R P+AP GL V+Y Sbjct: 244 TERSSAVPVAPACGLSLIGVDY 265 >gi|148655308|ref|YP_001275513.1| tRNA pseudouridine synthase ACD [Roseiflexus sp. RS-1] gi|166229831|sp|A5USG0|TRUA_ROSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148567418|gb|ABQ89563.1| tRNA pseudouridine synthase A [Roseiflexus sp. RS-1] Length = 270 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 114/249 (45%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG +E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGADFVGSQWQTNGRSVQGVLEAAWQQLTGERRRMTLAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + + +L FHAR+SA+RR Y Y I + Sbjct: 61 VANVRTDTRHTISTIVRGLNGIL--PEDVGVLAAWEAPDDFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDV 177 P L + A +P+ LD M + ++G HDF Sbjct: 119 TPSPLLRRHAAYVPRRLDTAAMDAVVRQVIGTHDFAPLSDGPQEGSTVRICYEARCTRTE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L+ I + A +FL +R+ VG+L VG+G+ + L DR+ LAP Sbjct: 179 VWGQPLVLIDIAANAFLRHMVRNLVGTLIQVGEGRIDADRFAAVLAGDDRR-ARVLAPAH 237 Query: 238 GLYFDSVEY 246 GLY +V Y Sbjct: 238 GLYLMAVRY 246 >gi|222111761|ref|YP_002554025.1| tRNA pseudouridine synthase a [Acidovorax ebreus TPSY] gi|254789633|sp|B9MDL6|TRUA_ACIET RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|221731205|gb|ACM34025.1| tRNA pseudouridine synthase A [Acidovorax ebreus TPSY] Length = 274 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 123/259 (47%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G+++Q +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRMALGVSYNGQAYNGWQSQPSGNTVQDRLEAALGRFATQEVHTICAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A+ R Y Y ++ Sbjct: 61 VHFDTQLQRAPFSWVRGTNTFL--PTDIAVQWAQPVPDAFHSRACAVARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD----- 176 +++ GR + +LD + M A QHL+G HDFT+FR+ CQA SP++T+ D Sbjct: 119 RPSVDAGRVGWVFHALDEQAMHRAVQHLLGEHDFTSFRASACQAKSPVKTLHRIDITRRA 178 Query: 177 ---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +FLH IR+ +G + +G G + + L+A+ R Sbjct: 179 PPAGESTGTHGCIPCYWRFEFEGNAFLHHMIRNIMGCIVAIGQGLYPPEWMRTVLEARSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 P P+GLYF Y Sbjct: 239 DAAAPTFSPDGLYFQGPVY 257 >gi|156743919|ref|YP_001434048.1| tRNA pseudouridine synthase ACD [Roseiflexus castenholzii DSM 13941] gi|189029997|sp|A7NR34|TRUA_ROSCS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|156235247|gb|ABU60030.1| tRNA pseudouridine synthase A [Roseiflexus castenholzii DSM 13941] Length = 270 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 112/249 (44%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+G+ + G Q Q NG S+QG++E A +TGE + AGRTD+GVHA Q Sbjct: 1 MRNIALRIEYDGTDFVGSQWQTNGRSVQGALEAAWQQLTGERRRMILAGRTDAGVHARGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+ + + LN L + I IL V ++FHAR+SA+RR Y Y I + Sbjct: 61 VANVSTNTRHSLATIIRGLNGVL--PEDIGILAAWEVPEEFHARYSAVRREYRYVIDNGR 118 Query: 121 APLALEKGRAWLIPKSLD---CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P L + A +P+ LD + + Sbjct: 119 TPSPLLRRHAAYVPRRLDVAAMDRAIQQVIGTHDFAPLSDGPQEGSTVRICYDARCTCTE 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L+ I V A +FL +R+ VG+L VG+G+ + L +R+ LAP Sbjct: 179 VWGQPLVLIDVAANAFLRHMVRNLVGTLIQVGEGRIDADGFAAVLAGANRR-ARVLAPAH 237 Query: 238 GLYFDSVEY 246 GLY +V Y Sbjct: 238 GLYLMAVRY 246 >gi|317968841|ref|ZP_07970231.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0205] Length = 289 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 118/247 (47%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y+GS Y GWQRQ S+Q ++E+A+ + + V AGRTDSGVHA Q Sbjct: 11 RRIALCLQYDGSAYCGWQRQPRDPSVQEALERALVQLDPDGPATVVAAGRTDSGVHAAGQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P ALN L +I + + + V +HA FSA R Y Y I + Sbjct: 71 VVHFDCAGPIPPHRWPAALNGRL--PASIRVRSAASVPADWHACFSATYRRYRYTIYNAR 128 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD + MR A + ++G HDF F S T+ V Sbjct: 129 IPNLFLAPWSWHRYQFRLDEDRMREALEGMLGEHDFAAFERAGSARSHSRTTLQEVSVQR 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+E+ + A FL+ +R +G L VG+G+ + + + Q R+E APP+GL Sbjct: 189 RGDLLEVELQASGFLYGMVRLVMGQLVAVGEGRLSLEAFSRRWRNQAREEVKEAAPPQGL 248 Query: 240 YFDSVEY 246 V Y Sbjct: 249 CLLRVGY 255 >gi|16329915|ref|NP_440643.1| tRNA pseudouridine synthase A [Synechocystis sp. PCC 6803] gi|3915173|sp|P73295|TRUA_SYNY3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1652401|dbj|BAA17323.1| pseudouridine synthase 1 [Synechocystis sp. PCC 6803] Length = 275 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 119/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++++Y G+ + GWQRQ N SSIQ +E AI V G+ V +HGAGRTD+GVHA QV Sbjct: 10 QRVALVMQYLGTHFHGWQRQPNFSSIQEEVELAIAKVVGQPVTLHGAGRTDAGVHAAAQV 69 Query: 62 AHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD +P K LN +L I + + VD +HARFSA+ R Y Y I T Q Sbjct: 70 AHFDDPVGQIPPHRWSKILNGHL--PQDIIVRGSAAVDSHWHARFSALWRRYRYSIYTDQ 127 Query: 121 APLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ L + ++ A + L+G+H F + + Sbjct: 128 WPNLFADQFSWHYYRFPLQEKTIQAAMEPLLGKHHLAAFHRAGSARRHSWVEVQGVECYR 187 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G ++ + + A FL+ +R VG L VG G+ + TD Q R AP +GL Sbjct: 188 RGPMVYLEIQANGFLYGMVRLLVGMLAEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGL 247 Query: 240 YFDSVEY 246 V Y Sbjct: 248 CLLRVGY 254 >gi|161833682|ref|YP_001597878.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] gi|152206172|gb|ABS30482.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri GWSS] Length = 250 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y+G+ ++GWQ QK S+Q +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ + + + + I I+N+ V K+ HARF+AI R Y YRI + Sbjct: 61 AHFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLGKN 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P +L+ WL K + + A+ L D+++F C + I I + + Sbjct: 121 PFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKN 180 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N++ + A +L +RS VG+L +G GK T D L A+DR AP +GL+ Sbjct: 181 NILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRN--IISAPAKGLFL 238 Query: 242 DSVEY 246 + Y Sbjct: 239 TKINY 243 >gi|326799821|ref|YP_004317640.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] gi|326550585|gb|ADZ78970.1| tRNA pseudouridine synthase A [Sphingobacterium sp. 21] Length = 255 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + ++G Y GWQ Q+N S+Q + KA+ + V G GRTD+GVHA + Sbjct: 6 KRYFVELAFHGGAYHGWQIQENAISVQEVLNKALGTLLRVPVNTVGCGRTDTGVHAKQLF 65 Query: 62 AHFDLVREWVPVILCK---ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD + + LNA L I++ L +V HARF AI+RSY Y I Sbjct: 66 AHFDDAVGAIEGNEERIVTGLNALL--PTDIAVKQLFVVAPNAHARFDAIKRSYEYHIH- 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 G +W + D E M AA+H++ DF+ F H Q + + + Sbjct: 123 -FGKNPFLHGFSWQLRDRPDVEAMNEAARHMMKYKDFSCFSKSHTQVFTNNCQLTKAEWQ 181 Query: 179 SFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + A FL +R+ VG+L +G+GK + + + +++R G P Sbjct: 182 WLDGGRLVFYISADRFLRNMVRAIVGTLMEIGNGKRDLNYIHEVINSKNRSMAGVSVPAC 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLTEVLY 250 >gi|309777173|ref|ZP_07672136.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] gi|308915043|gb|EFP60820.1| tRNA pseudouridine synthase A [Erysipelotrichaceae bacterium 3_1_53] Length = 253 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 109/246 (44%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I+ Y+GS Y GWQRQ N SIQ +E AI V G V + +GRTD+ VHAL Q Sbjct: 1 MPRYKVILSYDGSAYGGWQRQTNTHSIQQEVEAAIEKVEGRFVSITASGRTDAHVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V+ P +ALN+ L I I + +VD FHARF AI + Y Y I T Sbjct: 61 VFHFDSVKHLEPENWKRALNSLL--PHDIRIQEVCLVDDAFHARFHAISKRYDYLITTEV 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A L + S S I+TI DV Sbjct: 119 QNPFYYNYMGKDRTRLDVERMRECACIFLGTHDFTSFTSSKVDPRKSKIKTITRLDVVQE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + + FL +R +L G + + +++ L +D+ C A EGLY Sbjct: 179 EHAVRMIFEGNGFLRYMVRMIAQTLIEAGKHRLSVAAVKEMLYGKDKHLCRYKAQAEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LVEVRY 244 >gi|256390175|ref|YP_003111739.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] gi|256356401|gb|ACU69898.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928] Length = 284 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 8/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++ G + A+ V + V + AGRTD+GVHA QV Sbjct: 10 VRVRLDLAYDGTHFSGWAIQPKRRTVCGELTSALSTVLRQDVTLVVAGRTDAGVHASGQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 AH D+ E + L + + + + F ARF+A+ R Y YR+ Sbjct: 70 AHLDVPLELWAEHEERLLRRLAAVLPGDVRVWSAVPAPVGFDARFAAMGRRYAYRVTDAA 129 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR------TID 173 P L + P++LD M AA L+G HDF +F A++ T + Sbjct: 130 YGPHPLRRNDVTWHPRTLDPALMNEAAAALLGEHDFASFCKKREGATTIRCLTRLEWTRE 189 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + L+ V A +F H+ +RS VG+L VG+G+ D + L + R + Sbjct: 190 APTSLTPVGLLVADVRADAFCHSMVRSLVGALLAVGEGRRPVGDPGRILAEEVRSPEVKV 249 Query: 234 APPEGLYFDSVEY 246 APP+GL + V Y Sbjct: 250 APPQGLTLEEVVY 262 >gi|227512894|ref|ZP_03942943.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227523022|ref|ZP_03953071.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] gi|227083894|gb|EEI19206.1| pseudouridylate synthase [Lactobacillus buchneri ATCC 11577] gi|227089840|gb|EEI25152.1| pseudouridylate synthase [Lactobacillus hilgardii ATCC 8290] Length = 255 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 7/242 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKLPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + + LN+ L + I + V FHAR+ + Y YR+ + + Sbjct: 62 PFDLSAEAIYRGLNSML--PLDMEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + +D E + A LVG HDF++F + A S IRTI E+ Sbjct: 120 RNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAENEV 179 Query: 187 R--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ +R VG + +G G +D+ + + +DR + P GLY V Sbjct: 180 HLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRV 239 Query: 245 EY 246 Y Sbjct: 240 FY 241 >gi|183219967|ref|YP_001837963.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910091|ref|YP_001961646.1| pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687801|sp|B0SJC4|TRUA_LEPBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238687833|sp|B0SC03|TRUA_LEPBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|167774767|gb|ABZ93068.1| Pseudouridylate synthase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778389|gb|ABZ96687.1| tRNA pseudouridine synthase A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 264 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV--VVHGAGRTDSGVHAL 58 M Y +++EY+G+ + GWQ+QKN ++Q SIE A+ ++ + AGRTD+GVHAL Sbjct: 1 MPNYALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V +F +LNA +S+ N+ V FHARFS R Y+Y++ Sbjct: 61 GMVCNFKTEHPIPNFHKLLVSLNAL--TPTGVSVKNVVEVPSDFHARFSCTGREYIYKLY 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRTIDHF 175 + + +GRA+ + +D E ++ Q LVG DF +F + + Sbjct: 119 YSKYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAIQ 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 N +IR+ A F+H +R VG+L +G G+W S ++ L+ ++R + G P Sbjct: 179 LENLSPEWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTLP 238 Query: 236 PEGLYFDSVEY 246 P+GLYF Y Sbjct: 239 PDGLYFVRAYY 249 >gi|226305372|ref|YP_002765330.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4] Length = 294 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + ++ G IE + V + V + AGRTD+GVHA QV Sbjct: 21 VRLRLDISYDGTDFSGWARQTDLRTVCGEIEDKLGTVLRQPVQLTVAGRTDAGVHATGQV 80 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ E +P + + + + + +S+V F ARFSAIRR Y YR+ Sbjct: 81 AHVDVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDFDARFSAIRRYYEYRVTNAA 140 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + R + D M+ A+ L+G H+F F + ++ +R + FD Sbjct: 141 FGVEPLRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAFC-KRREGATTVRELQRFDWAQ 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + V A +F + +RS VG++ VG+G+ T+ + L R +AP GL Sbjct: 200 EGTVFTAYVNADAFCWSMVRSLVGAVLSVGEGRRTADWVAGLLDETLRSSSILVAPAHGL 259 Query: 240 YFDSVEY 246 V+Y Sbjct: 260 SLVRVDY 266 >gi|227509961|ref|ZP_03940010.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190567|gb|EEI70634.1| pseudouridylate synthase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 255 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 7/242 (2%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 Y+G+ + G++RQ N +I+G + + + ++++G+GRTD+GVHA+ QVAHFD Sbjct: 2 YDGTNFSGFERQPNRRTIEGVLTQKVNVMAKMPEPPIIIYGSGRTDAGVHAVAQVAHFDF 61 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + + LN+ L + I + V FHAR+ + Y YR+ + + Sbjct: 62 PFDLSTEAIYRGLNSML--PLDMEITKVEKVSNDFHARYDVSGKKYFYRMYLGEFQNPFK 119 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + +D E + A LVG HDF++F + A S IRTI E+ Sbjct: 120 RNYTGHWKFPIDMEKVNHALADLVGEHDFSSFVASGSTARSNIRTIYSASAKLDQAENEV 179 Query: 187 R--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ +R VG + +G G +D+ + + +DR + P GLY V Sbjct: 180 HLEFYGNGFLYNMVRIMVGVVAEIGSGMRPESDVLRLFEVKDRDQARRTMPASGLYLKRV 239 Query: 245 EY 246 Y Sbjct: 240 FY 241 >gi|320451375|ref|YP_004203471.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] gi|320151544|gb|ADW22922.1| tRNA pseudouridine synthase A [Thermus scotoductus SA-01] Length = 254 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 123/249 (49%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ ++QG +E+ + + G + AGRTD+GVHAL Sbjct: 1 MRRILILTEYDGTHFAGLQRQRTGLRTVQGELERVLPGI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 HFDL + +ALN L + + ++ V FHAR A+ R+YLYRI+ R Sbjct: 60 MPFHFDLGSRIPTEKIPQALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYLYRILLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L + RA + LD +R A L GRH+F F +A + Sbjct: 118 SHPSPLLRHRALWLRHPLDLAAIREALSFLPGRHNFLGFAKEEVRAGERELYEARMEEVE 177 Query: 180 FGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 E +SFL Q+R VG+L VG GK + + LQ QDR + GP APP+ Sbjct: 178 GEAGRELRFYFRGQSFLRGQVRGMVGTLLEVGLGKRSPESIRLILQTQDRGQAGPSAPPQ 237 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 238 GLYFLEAAY 246 >gi|163747262|ref|ZP_02154617.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] gi|161379537|gb|EDQ03951.1| tRNA pseudouridine synthase A [Oceanibulbus indolifex HEL-45] Length = 257 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 117/250 (46%), Positives = 155/250 (62%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY+G+ + GWQRQ + ++QG IE A+ + + AGRTD+GVH L Q Sbjct: 1 MPRYALKIEYHGAPFNGWQRQVDLPTVQGFIEAALARLEPGAHTIAAAGRTDTGVHGLGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ R+W P L +ALN +LK I+I + + + FHARFSA+ R Y + I++R+ Sbjct: 61 VAHCDMARDWSPFRLGEALNYHLK-PQPIAITDCVLAPEDFHARFSALERRYHFCILSRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP + G W + LD E M+ AA LVG+HDFTTFRS CQA SP++T+D DV Sbjct: 120 APAVHQAGLVWQVKHRLDVEAMQAAADLLVGKHDFTTFRSTICQAVSPVKTLDRLDVREV 179 Query: 181 G----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ARSFLH Q+RSFVG+L+ VG G W+ D+ AL A+DR CGP+ PP Sbjct: 180 ETATGTEYHFDVRARSFLHNQVRSFVGTLERVGAGSWSVADMGAALAAKDRAACGPVCPP 239 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 240 HGLYLAHVSY 249 >gi|160900673|ref|YP_001566255.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] gi|238687164|sp|A9BNH5|TRUA_DELAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160366257|gb|ABX37870.1| tRNA pseudouridine synthase A [Delftia acidovorans SPH-1] Length = 282 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 82/267 (30%), Positives = 125/267 (46%), Gaps = 24/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + YNG Y GWQ Q +G++IQ +E A+ + V AGRTD+GVH L QV Sbjct: 1 MRVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 61 VHFDTPLDRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH------- 174 ++E GR + +LD + M+ AA+HL+G HDF++FR+ CQA SP++T+ Sbjct: 119 RPSVEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRM 178 Query: 175 ---------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 D +FLH +R+ +G L +G G + ++ Sbjct: 179 AGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQ 238 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 + L A+ R P P+GLYF Y Sbjct: 239 QVLDARSRDAAAPTFSPDGLYFLGPVY 265 >gi|307579643|gb|ADN63612.1| tRNA pseudouridine synthase A [Xylella fastidiosa subsp. fastidiosa GB514] Length = 256 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 124/247 (50%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +RY + +EY+GS + GWQ Q G S+Q ++++A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFLGWQ-QLGEMGPSVQATLQQALASVADSSVRVVCAGRTDAGVHGQC 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD P L S + + FHARFSA R Y YR++ R Sbjct: 60 QVVHFDSAVTRPPRAWILGTTTRLPSSVAVRWCV--PTSEDFHARFSACARRYRYRLLNR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q AL+ LD + M +AAQ L+G +DF+ FRS CQA R + V Sbjct: 118 QVRPALQHQFLSWERHPLDAQAMHVAAQMLLGENDFSAFRSAQCQALHARRELQAISVRR 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +IEI V A +FLH +R+ VGSL +VG G+ + + L +DR GP A GL Sbjct: 178 DAEVIEICVQANAFLHHMVRNIVGSLLMVGTGERPMEWIAELLAGRDRTMAGPTASARGL 237 Query: 240 YFDSVEY 246 F Y Sbjct: 238 VFVGPLY 244 >gi|319938474|ref|ZP_08012868.1| pseudouridylate synthase [Coprobacillus sp. 29_1] gi|319806390|gb|EFW03057.1| pseudouridylate synthase [Coprobacillus sp. 29_1] Length = 244 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 135/245 (55%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G+Q Q ++QG I+KA+ + E V++H +GRTD+ VHA+ QV Sbjct: 1 MRVKCVVSYDGSRFHGFQVQDKERTVQGEIQKALKKINEEEVIIHASGRTDAKVHAVHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD ++ P +A+N + + + I IL+ S D +FH+R+SAI++ Y Y + T++ Sbjct: 61 FHFDTKKDLPPQQWKRAINHF--MPNDIYILDASYTDDEFHSRYSAIKKEYRYLLSTKE- 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + LD E MR A+Q +G H+F +F S ++ IRT+ FD+ Sbjct: 118 YNPFDTNYVFQYGRQLDIELMREASQIFIGEHNFASFCSYDQYGNT-IRTLYTFDIVEED 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I R++ F +R VG + VG + + L + L++ K+C A P+GLY Sbjct: 177 GIITFRLIGNGFRRYMVRHLVGGIIQVGAKRISKEILSEMLESCGTKKCLFKAKPQGLYL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 QEVYY 241 >gi|159904194|ref|YP_001551538.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] gi|226741290|sp|A9BCM2|TRUA_PROM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159889370|gb|ABX09584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9211] Length = 289 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R ++I+YNGSG+ GWQRQK G+S+Q +E+A+ + + + V AGRTDSGVHA Q Sbjct: 16 KRIALLIQYNGSGFCGWQRQKEGNSVQSILEEAVSSLDPFQPIKVVAAGRTDSGVHASGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD ALN L I + ++ +HA FSA R Y Y I Sbjct: 76 VAHFDCSGFIPANRWAAALNGRL--PKAIRVRYSALRPITWHACFSATYRRYRYTIYNGC 133 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P W + D M +A Q + G HDFT F+ + + T++ + Sbjct: 134 KPNLFLSPWCWHRYQFRLDENLMNLALQGIKGFHDFTAFQRAGSNRPNALTTVEDVHLFR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ I + A FL+ +R VG L VG+ + + + E+ + + R+E APP GL Sbjct: 194 QGDLVSIDIQATGFLYGMVRLLVGQLVAVGEHRISVAEFERRWKLKLREEVREAAPPNGL 253 Query: 240 YFDSVEY 246 V Y Sbjct: 254 SLIRVGY 260 >gi|285017777|ref|YP_003375488.1| tRNA pseudouridine synthase a (tRNA-uridine isomeraseI (tRNA pseudouridylate synthaseI protein [Xanthomonas albilineans GPE PC73] gi|283472995|emb|CBA15500.1| probable trna pseudouridine synthase a (trna-uridine isomeraseI (trna pseudouridylate synthaseI protein [Xanthomonas albilineans] Length = 257 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q +++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSAFQGWQ-QLGESGGPSVQATLQGALSSVADVPVSVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L ++ + V FHARFSA R Y YR++ Sbjct: 60 CQVVHFDCAALRPPRGWMLGATARL--PPSVCVRWCVPVADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + L E M IAAQ L+G DF+ FRS+ CQA R + V Sbjct: 118 RQVRPALYRQTLSWERRPLQVEAMHIAAQALLGEQDFSAFRSVQCQALHARRELQSIVVT 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L+E ++ A +FLH +R+ VGSL +VG G+ + + + L ++R+ GP A P+G Sbjct: 178 RNGELVEFQLQANAFLHHMVRNIVGSLVMVGTGEKPVSWIGELLSGRNRRIAGPTASPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFVGPLY 245 >gi|121605935|ref|YP_983264.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] gi|166228746|sp|A1VRR5|TRUA_POLNA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120594904|gb|ABM38343.1| tRNA pseudouridine synthase A [Polaromonas naphthalenivorans CJ2] Length = 264 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 130/249 (52%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+GS Y GWQ Q +G ++Q +E A+ + + V AGRTD+GVHAL QV Sbjct: 1 MRIALGISYSGSAYEGWQSQLSGKTVQDKLELALSRFAVQPIRVMCAGRTDAGVHALMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + NA+L I++ V +FH+R SAI R Y Y ++ Sbjct: 61 VHFDTPLQRETSSWVRGTNAFL--PSDIAVQWAQPVPDEFHSRASAIARRYAYVVLESPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF- 180 ++E GR + + LD + MR AA HL+G HDF++FR+ CQA SP++T+ +++ Sbjct: 119 RPSVEAGRVGWVYRPLDGDAMRQAALHLMGEHDFSSFRAAQCQAKSPVKTMSRIEISQRA 178 Query: 181 ---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 A +FLH IR+ +G L +G G L + + A+ R P P+ Sbjct: 179 GPGSRYWRFEFEANAFLHHMIRNIMGCLLAIGQGNHPPEWLAEVVAARRRDAAAPTFSPD 238 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 239 GLYFLGPVY 247 >gi|227872273|ref|ZP_03990632.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] gi|227841885|gb|EEJ52156.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268] Length = 249 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 5/247 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 Y +I+ Y+GS YFG+++QK+ ++IQG +E + G E V + GA RTD+GVHA Sbjct: 4 NYKLIVAYDGSRYFGFEKQKDQEATIQGKLEGVFSRIPGNEEGVEIIGASRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 A+ L E + N YL + I+I+++ V +FHAR++A+ + Y Y Sbjct: 64 MCANVFLDTELSEEEILDYGNRYL--PEDIAIVSVKKVSPRFHARYNALGKIYRYSCYIG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ + + D E M+ AA+ L+G+ DF +F S IR+I + Sbjct: 122 RTKPVFDRKILLHLEEEPDLEAMQEAAKFLIGKQDFKSFCGNPKMKKSTIRSISSIRIQK 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 NL+ FL QIR VG+L VG K + D+ + A+DR++ G P +GL Sbjct: 182 SQNLLRFYFEGSGFLQYQIRIMVGTLLEVGYHKRKAGDIPGIIDAKDRQQAGYTVPAKGL 241 Query: 240 YFDSVEY 246 V Y Sbjct: 242 CLMKVLY 248 >gi|197303593|ref|ZP_03168631.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] gi|197297327|gb|EDY31889.1| hypothetical protein RUMLAC_02321 [Ruminococcus lactaris ATCC 29176] Length = 264 Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y ++I Y+G+ Y GWQRQ N +IQG +E I G V V+G+GRTD+GVHA Sbjct: 13 MRTYRLVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + +N L I I + FHAR SA+ + Y+Y+I T Sbjct: 73 QTASVVLHGKAEDGFFTEKVNKLL--PPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTD 130 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P ++ + PK LD M+ AA+ L G H+F + + +S RTI V Sbjct: 131 EKPDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDE-TSTKRTIYAIMVGG 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I I+ FL+ +R G+L VG G + AL+A+DR + G LAP GL Sbjct: 190 QGGRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGL 249 Query: 240 YFDSVEY 246 + D V Y Sbjct: 250 FLDEVYY 256 >gi|332664422|ref|YP_004447210.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] gi|332333236|gb|AEE50337.1| tRNA pseudouridine synthase A [Haliscomenobacter hydrossis DSM 1100] Length = 256 Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M ++ + +EY+GS + GWQ Q++ SIQG + KA +V V V+G+GRTD+GVHAL Sbjct: 1 MAKFKLTLEYDGSRFKGWQVQEDARSIQGQLIKAAKIVFETDKVEVYGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH + + ++ + LN L I++L++ V +FHAR A+ RSY+Y+I Sbjct: 61 QVAHLAVDTKMPVKMIRQKLNDQLTH--DINVLSVDPVSDKFHARHDAVARSYVYQI--S 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + A K W + LD E M +AA HL+G HDF +F + S + H V Sbjct: 117 RRRNAFGKHFMWWVKDPLDVERMNVAAAHLIGMHDFKSFSNEKGTEKSSKVELQHLKVVE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + + ++A FL +R VGSL VG G+ ++ L+ ++ APP GL Sbjct: 177 KGDKVVVHIIASHFLWKMVRRVVGSLVEVGAGRLDPDKFKEWLEKPSQEPAKFTAPPAGL 236 Query: 240 YFDSVEY 246 + + V + Sbjct: 237 FLERVYF 243 >gi|300727110|ref|ZP_07060529.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] gi|299775654|gb|EFI72245.1| tRNA pseudouridine synthase A [Prevotella bryantii B14] Length = 259 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 114/263 (43%), Gaps = 21/263 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRT 51 M RY +I Y+G+ Y GWQ Q NG+S+Q ++ A+ + V GAGRT Sbjct: 1 MHRYFIIFAYDGTNYHGWQIQPNGNSVQAELQHALALSLRSFLLLKSNDFEIEVVGAGRT 60 Query: 52 DSGVHALRQVAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 D+GVHA + AHF+L E + +N L IS+ ++ V+ HAR Sbjct: 61 DAGVHARQMAAHFELSEEEFPLLDESKCKQIVYRINRIL--PRDISVSDVYPVESDMHAR 118 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 FSA R+Y Y I T + + + LD + M + ++ DF F Sbjct: 119 FSAKWRTYHYYIHTDKN--PFLRFYSLETHYPLDFDLMNEGGKIIMEHQDFAAFCKAGAD 176 Query: 165 ASSPIRTIDHFDVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + + + + A FL +R+ VG+L L+G K T DL L Sbjct: 177 NKTTLCDVTECKWVQTSPTSWYLTITANRFLRNMVRAVVGTLFLLGRHKITLDDLRVILH 236 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 +R + G P L+ + VEY Sbjct: 237 EGNRSKAGESMPGNALFLEKVEY 259 >gi|325915522|ref|ZP_08177833.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] gi|325538238|gb|EGD09923.1| pseudouridylate synthase I [Xanthomonas vesicatoria ATCC 35937] Length = 257 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 130/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V + V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASVQAALSSVADAPIQVVCAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + V FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDALRQPRGWMLGTTARLPPSIAVRWCV--PVADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD E M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTLSWERRPLDAEAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAITVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E+RV A +FLH +R+ VGSL L+G G+ + + L +DR GP APP+G Sbjct: 178 RIGEVVEVRVQANAFLHHMVRNIVGSLILIGTGEQPTDWIATLLAGRDRTVAGPTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|260438877|ref|ZP_05792693.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] gi|292808716|gb|EFF67921.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876] Length = 249 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 120/249 (48%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV-TGEIV-VVHGAGRTDSGVHAL 58 + I ++G+ YFGW+ Q N +IQG IE + + + E V V G GRTD+GVHA Sbjct: 3 QNFKFKIMFDGTRYFGWEHQPNTDLTIQGKIETVLQRMVSSEKVPEVIGCGRTDAGVHAK 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +A+ L + + +N YL D I +L + ++FH+R+ A+ ++Y Y T Sbjct: 63 AMIANAFLETDMSTDAIRDYMNRYL--PDDICVLEVKEAAERFHSRYKAVGKTYCYTCYT 120 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++ + I ++ D M AA+ L+G HD+ +F S S +R +D + Sbjct: 121 GPLKPVFDRKYVYYIEETPDIGKMEEAAKLLIGIHDYASFCSNPKMKKSTVREVDSIQII 180 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I FL +R G+L VG GK + + + +A+DR G AP G Sbjct: 181 KKGQYIRFTYHGTGFLQHMVRILTGTLLEVGFGKRDVSSIPELFEAKDRSLAGFTAPASG 240 Query: 239 LYFDSVEYS 247 L V+Y+ Sbjct: 241 LCMMQVDYN 249 >gi|325847073|ref|ZP_08169899.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481045|gb|EGC84090.1| tRNA pseudouridine synthase A [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 252 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F ++ L YL I L+ VDK FHARFS ++Y Y I + Sbjct: 64 INFLTAKDIRADKFHFHLKKYL--PADILALSSKKVDKNFHARFSVKTKTYKYVISLEKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L S + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILD 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N++ + A SFLH Q+R GSL + GK + D + ++K P GLY Sbjct: 182 NNILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKFYFDKNNKKRANPTLKAGGLY 241 Query: 241 FDSVEY 246 DS++Y Sbjct: 242 LDSIDY 247 >gi|226365626|ref|YP_002783409.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] gi|226244116|dbj|BAH54464.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4] Length = 270 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 5/245 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + + Y+G+ + GW RQ ++ G IE+ + V + + AGRTD+GVHA QVAH Sbjct: 2 RLDVAYDGTDFSGWARQNGLRTVCGEIEEKLGAVLRSPLQLTVAGRTDAGVHATGQVAHV 61 Query: 65 DLVREWVPVIL---CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 D+ E +P + L +L I ++ + Y Sbjct: 62 DVPVEALPDEPSRLVRRLARFLPKDVRIKQISFAPEHFDARFSAMRRHYEYRL-TSAVYG 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L PK LD E MR A+ L+G HDF F + ++ +R + FD G Sbjct: 121 ADPLRARDTVSYPKILDLELMRSASATLLGLHDFAAFC-KRREGATTVRDLQRFDWERDG 179 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ V A +F + +RS VG++ VG+G+ +E L+ R +AP GL Sbjct: 180 DVFTAFVSADAFCWSMVRSLVGAVLAVGEGRRDLDWIEGLLRETSRSSSILVAPAHGLCL 239 Query: 242 DSVEY 246 V+Y Sbjct: 240 VRVDY 244 >gi|282890956|ref|ZP_06299470.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499171|gb|EFB41476.1| hypothetical protein pah_c032o038 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 254 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 5/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +II Y+G + GWQ+ G SI+ ++E + + E +++ A RTD+GVHA Q Sbjct: 1 MKNIRLIISYDGGRFLGWQKTSMGPSIEENLENVLHQILQEPIILQAASRTDAGVHAHEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V +F + + +LN L I +L+ I FH + + Y Y I T Sbjct: 61 VVNFFTEKPIDLNKITNSLNRLL--PKDIVVLDAQIAPDHFHPTLDCLSKEYRYYISTGP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI---DHFDV 177 + AW P LD E ++ AA+ LVG HDF+ F ++ S + Sbjct: 119 IQPPNHRFYAWHCPGHLDKELIKKAAEQLVGTHDFSAFCNLKPSESYTHHVREVLNIQIH 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + +V+ +SFL+ +R+ VG+L VG GK D+ L +DR + G AP Sbjct: 179 ETDAHHFYFQVMGKSFLYKMVRNIVGTLIFVGKGKLRCEDIPLLLSCRDRTKIGMTAPAH 238 Query: 238 GLYFDSVEYS 247 GL + Y+ Sbjct: 239 GLTLYRLNYA 248 >gi|254446439|ref|ZP_05059915.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] gi|198260747|gb|EDY85055.1| tRNA pseudouridine synthase A [Verrucomicrobiae bacterium DG1235] Length = 243 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ Y+G+ Y GWQ+Q S+Q IE+ + + E V +HG+GRTD+GVHAL QV Sbjct: 1 MRWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L KAL++ L I + + + V ++FHARFSA+ + Y YR+ +A Sbjct: 61 FHFDYDWRHGGESLVKALHSKL--PKEIRVESATEVGEEFHARFSAVSKRYQYRLALGEA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K + + + + S R + V+ Sbjct: 119 NPFQWAYCWPVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTERKMLATGVSQDT 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A F++ +RS VG++ VG G+ +++E+ L++ R AP +GL+ Sbjct: 179 EYVGLSFQADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKGLFL 238 Query: 242 DSVEY 246 + V Y Sbjct: 239 EKVFY 243 >gi|289669396|ref|ZP_06490471.1| tRNA pseudouridine synthase A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 257 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 129/248 (52%), Gaps = 6/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +RY + +EY+GS + GWQ Q G S+Q S++ A+ V V V AGRTD+GVH Sbjct: 1 MRYALGVEYDGSEFQGWQ-QLGEHGGPSVQASLQAALSSVADGQVQVICAGRTDAGVHGE 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P A L S + V FHARFSA R Y YR++ Sbjct: 60 CQVVHFDSDARREPRGWMLGTTARLPPSIAVRWCV--PVADDFHARFSARARRYRYRLLN 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 RQ AL + + LD + M AAQ L+G +DF+ FRS+ CQA R + V Sbjct: 118 RQIRPALYRQTVSWERRPLDADAMHAAAQALLGENDFSAFRSVQCQALHARRNLQAIHVQ 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G ++E++V A +FLH +R+ VGSL LVG G+ + + L +DR G APP+G Sbjct: 178 RIGEVVEVQVQANAFLHHMVRNIVGSLILVGTGERPADWIATLLAGRDRTVAGQTAPPQG 237 Query: 239 LYFDSVEY 246 L F Y Sbjct: 238 LVFIGPLY 245 >gi|223984957|ref|ZP_03635058.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] gi|223963077|gb|EEF67488.1| hypothetical protein HOLDEFILI_02362 [Holdemania filiformis DSM 12042] Length = 268 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R+ ++ Y+G Y GWQ Q +IQ +I+ AI ++ + V + G+GRTD+ VHA Sbjct: 2 MQRFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAW 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD+ +A+N +L I I ++ VD +FHARF AI + Y YRI Sbjct: 62 GQVFHFDVDFSLNAFQWKRAINGHL--PKDIHIRSVEAVDSRFHARFDAIGKRYEYRIQL 119 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A + + AA + + + + RTI ++ Sbjct: 120 GEANVFTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCANSRAEMPDQARTITRLELA 179 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + + + FL +R G+L VG G+ D++ LQAQD++ C A P+G Sbjct: 180 EENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKPQG 239 Query: 239 LYFDSVEY 246 L V Y Sbjct: 240 LTLVEVYY 247 >gi|329942480|ref|ZP_08291290.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|332287117|ref|YP_004422018.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|313847713|emb|CBY16703.1| putative tRNA pseudouridine synthase a [Chlamydophila psittaci RD1] gi|325507334|gb|ADZ18972.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] gi|328815390|gb|EGF85378.1| tRNA pseudouridine synthase A [Chlamydophila psittaci Cal10] gi|328914357|gb|AEB55190.1| tRNA pseudouridine synthase A [Chlamydophila psittaci 6BC] Length = 268 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N S+Q IE ++ V G+ + V +GRTD+GVHA Q Sbjct: 1 MTQVVLLLAYQGTAYAGWQRQPNDLSVQEVIENSLTKVVGKRIHVTSSGRTDAGVHAFGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D R + K LNA L I I ++ + D FH+RFSAI + Y Y + Sbjct: 61 VAHFPQPDHPRFSQASGIKKMLNALL--PKDIVIRDVVLGDDTFHSRFSAIAKEYRYLLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ ++ L + M+ A++L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFSYYPRHHLRTDLMQEGAKYLIGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDNGETVTIICKGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILIQKNRRKGPPAAPSY 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLYHVCY 247 >gi|298243939|ref|ZP_06967746.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] gi|297556993|gb|EFH90857.1| tRNA pseudouridine synthase A [Ktedonobacter racemifer DSM 44963] Length = 264 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 122/255 (47%), Gaps = 14/255 (5%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 IEY+G+ Y G+QRQ +G ++QG++E A+ ++G + V GAGRTD GVHA QV Sbjct: 3 IACGIEYDGTDYHGFQRQSASHGPTVQGTLEAAVTQISGVQITVMGAGRTDVGVHASGQV 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF + +ALNA L T+ + + + FHARFSA RSY Y I Sbjct: 63 IHFRTESRLTVEVWRRALNAVL--PSTVVVRWAKEMPEGFHARFSAQSRSYRYTIWNECF 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-------HCQASSPIRTIDH 174 P AL A+ + LD M A ++L+GR DF F IRT+ Sbjct: 121 PTALRARYAYHCSRELDVTLMDDACRYLLGRKDFGAFGHSPNDSNPLKPGPHHCIRTMLE 180 Query: 175 FDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + LI A +FL Q+R VG+L LVG + + + + +Q ++ G Sbjct: 181 ARCLRDHQQAELIYCDFTADAFLTGQVRRMVGTLLLVGQQRLSVAEFAEIVQRAEKTHPG 240 Query: 232 PLAPPEGLYFDSVEY 246 AP GL VEY Sbjct: 241 SAAPSLGLCLVRVEY 255 >gi|189501513|ref|YP_001957230.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] gi|189496954|gb|ACE05501.1| tRNA pseudouridine synthase A [Candidatus Amoebophilus asiaticus 5a2] Length = 253 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 9/250 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y G+ Y GWQ Q+N +S+Q I+K + + + + G+ RTD+GVHA +Q Sbjct: 1 MRYFLEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH D+ L LN L + I+IL + V H+RF A+ R+Y+Y+I Sbjct: 61 AHVDMPFTIDIDKLKYKLN--LIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKI--SCT 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ + LD E M AA L +F +F + + + + Sbjct: 117 KNPFMQATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHW 176 Query: 182 -----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + ++ A FL +R+ VG+L VG GK + D E L +DR L P Sbjct: 177 STGSNDQLIFQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVPA 236 Query: 237 EGLYFDSVEY 246 GL +V Y Sbjct: 237 CGLTLVNVTY 246 >gi|78357749|ref|YP_389198.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754841|sp|Q30XU3|TRUA_DESDG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78220154|gb|ABB39503.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 278 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 87/271 (32%), Positives = 128/271 (47%), Gaps = 27/271 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNG---SSIQGSIEKAIFLVTGEIVVVHGAGRT 51 M R +II Y G+ Y GWQ Q + ++Q ++E A + G V VHGAGRT Sbjct: 1 MARLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 DSGVHA QVAH D+ V +ALNA L + IS+L ++V FHARF A+++ Sbjct: 61 DSGVHAEGQVAHLDIPDAKAAVDWRRALNAKL--PEDISVLQAAVVPDGFHARFDAVKKR 118 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y YRI +A + ++ + LD M AA + G HDF +F++ + ++ +RT Sbjct: 119 YTYRIWLTRAFVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVRT 178 Query: 172 ID----------------HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + H + A FL +R+ +G L G G+ Sbjct: 179 VYSITRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCAP 238 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 D+ + A+DR+ P AP GL + V Y Sbjct: 239 EDVPAIIAARDRRLSAPTAPACGLTMERVFY 269 >gi|307294617|ref|ZP_07574459.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] gi|306879091|gb|EFN10309.1| tRNA pseudouridine synthase A [Sphingobium chlorophenolicum L-1] Length = 248 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 125/246 (50%), Positives = 161/246 (65%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AIF V+GE V+H AGRTD+GVH + Sbjct: 1 MTRFAFTVEFDGRPFMGWQRQAHGPSVQQAIEDAIFAVSGERAVIHAAGRTDAGVHGIAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ I+IL V +HARFS + RSY+YRI R+ Sbjct: 61 RAHADIAKDMAPFRLMEALNARLR-PHPIAILACEAVPDDWHARFSCVGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G W + + LD + M+ AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTWENGLVWRVIQPLDTDAMQEAAQLLVGRHDFTTFRSAHCQAESPVKTLDRLDVERS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L LVG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIYAEARSFLHHQVRSMVGCLALVGMGRWSIGDLEAARDARDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVRARY 245 >gi|302874184|ref|YP_003842817.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|307689556|ref|ZP_07632002.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] gi|302577041|gb|ADL51053.1| tRNA pseudouridine synthase A [Clostridium cellulovorans 743B] Length = 245 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IE++GS Y GWQ QK+ ++QG IE + +TGE + V G R D+G HA Sbjct: 1 MRNLKLTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +A+F E + L +L + I + + VD++FHAR++A + Y Y I Sbjct: 61 YIANFKTNCELSCTAISIYLYEFL--PEDILVKFIEEVDERFHARYNAKAKVYEYVINNN 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ I L+ E M AA+ G+HDF F ++ A S +RT++ + Sbjct: 119 NLRNVFNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI+I ++A FL R VG+L VG G +T++ K L+ + E P+A + L Sbjct: 179 DNGLIKIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKAL 238 Query: 240 YFDSVEY 246 + V Y Sbjct: 239 FLKKVIY 245 >gi|160903290|ref|YP_001568871.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] gi|189030138|sp|A9BGW7|TRUA_PETMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|160360934|gb|ABX32548.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95] Length = 245 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 3/243 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS ++G+Q Q ++Q EKA+ ++ + + + GRTD+GVHA+ Q Sbjct: 1 MKWVAATVMYDGSNFYGYQSQPTFRTVQDEFEKALKVIFKKEIPSYACGRTDTGVHAVGQ 60 Query: 61 VAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V F + E + K ALNA L + + + + V + F+ R A +R Y Y I Sbjct: 61 VISFKVENENMTEKNIKDALNAIL--PEDVYVKEVKEVKEGFNPRAEAKKRIYHYFIYIS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + R W IP +L+ E MR AA++ G HDFT+F++ + + + + Sbjct: 119 EDPNIFLRDRVWWIPFALNLEKMRQAAKYFEGEHDFTSFKTGNDERNPIRTIYRVRIIEL 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI IRV +SFL +R+ VGSL VG W +++ L+A+ R AP +GL Sbjct: 179 RKDLILIRVEGKSFLKRMVRNIVGSLVKVGTDVWEVEKIQEILEAKKRALAPASAPAQGL 238 Query: 240 YFD 242 YF Sbjct: 239 YFY 241 >gi|85860424|ref|YP_462626.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] gi|85723515|gb|ABC78458.1| tRNA pseudouridine synthase A [Syntrophus aciditrophicus SB] Length = 328 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 130/246 (52%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++Y + +EY+G+GY GWQ QKN SIQG++ + + G V + GAGRTD+GVHAL QV Sbjct: 65 VKYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQV 124 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH + R P L + LN L +I+IL + FHAR SA RSYLY I Sbjct: 125 AHLETTRRMPPRKLLEGLNDAL--PSSINILRVEEAPPLFHARHSAQLRSYLYVI--SGH 180 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-FDVNSF 180 A K W I L+ + M+ A++ G HDF++F +P R ++++ Sbjct: 181 RTAFGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHAS 240 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI RV FL +R VG + VG K +D+ + L++ + APP GLY Sbjct: 241 GDLIFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLY 300 Query: 241 FDSVEY 246 + V Y Sbjct: 301 LERVLY 306 >gi|284033969|ref|YP_003383900.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] gi|283813262|gb|ADB35101.1| tRNA pseudouridine synthase A [Kribbella flavida DSM 17836] Length = 270 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG++E+A+ V + V AGRTD+GVHA Sbjct: 1 MRWRIDLRYDGTEFHGWARQDGLRTVQGALEEALGTVLRLPDRPAVTCAGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV H DL L + LN L ++ + + A R Y Sbjct: 61 QVTHVDLDVPVTGRDLLRRLNGVLPDDVAVTAVAEAADGFDARFSALARRYVYRL-CDDA 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + + + LD + M AA L+G HDF F AS+ +++ V Sbjct: 120 VGWDPLRRREVLRVVRPLDVDRMNAAAAQLLGEHDFAAFCKKREGASTVRALLEYSWVRV 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L++ V+A +F H+ +R+ VG+L VGDG+ L + R + P GL Sbjct: 180 GPGLLDGTVIADAFCHSMVRALVGALIPVGDGRRDVDWPAAVLAGKMRDSAVAVLPAHGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 TLEEVRY 246 >gi|126697063|ref|YP_001091949.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] gi|166228747|sp|A3PF23|TRUA_PROM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126544106|gb|ABO18348.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9301] Length = 268 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R ++++Y+GS Y GWQ+QKN +++Q +++A+ +T V AGRTD+GVHA Q Sbjct: 1 MKRVALLVQYDGSHYSGWQKQKNATTVQEILDRALLKITNHTVQTFAAGRTDAGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H D+ LN+ L +I IL V +HA +SA+ R Y Y I + Sbjct: 61 VVHCDVDCVVPGNSYSDVLNSLL--PSSIRILESIEVKDSWHACYSALYRHYRYVINNSK 118 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P ++ K LD M A++ ++G HDF F+ ++ I I + D+ Sbjct: 119 FPNLFIDNWSWHRYQKVLDEVLMLNASRQMIGEHDFFAFQKTGSNRTNSITKIKNIDIKR 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +LI + + A FL+ +R +G L LVG+ K + + + + AP +GL Sbjct: 179 VEDLIFVDIKATGFLYGMVRLIIGQLVLVGENKISPEIFTDRWVNKKKNDVKESAPAKGL 238 Query: 240 YFDSVEY 246 F + Y Sbjct: 239 CFVNAVY 245 >gi|218886490|ref|YP_002435811.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226708648|sp|B8DRQ6|TRUA_DESVM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|218757444|gb|ACL08343.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 277 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 82/279 (29%), Positives = 117/279 (41%), Gaps = 35/279 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + + Y G+ GWQ Q ++QG +E+ + G V +HGAGRTDSGV Sbjct: 1 MARLALTVSYVGTRLAGWQIQARTDRPQPRTVQGELERIAERIVGAPVRLHGAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + +A NA L D IS+ + V +FHARF A ++Y YR Sbjct: 61 HAEAQVAHMDVPDHRADLDWQRAFNAGL--PDDISVAAVVRVPDEFHARFDARGKTYTYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + LD + M AA +L G HDF +F++ + +RT+ Sbjct: 119 LWPERRWVPPRLAPFAWATGQLDMDAMDAAAAYLHGMHDFASFQNTGTDIVTTVRTVTRV 178 Query: 176 DVNSFG----------------------------NLIEIRVVARSFLHTQIRSFVGSLKL 207 G ++ A FL +R+ +G L Sbjct: 179 ARRHEGEAPVQPALPGAQPLAGAEETANAMAGGLRVMAWDFEADGFLKQMVRNMMGLLVA 238 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK + L A+DRK AP GL V Y Sbjct: 239 VGRGKLPPDAVPAILAARDRKTAPATAPAHGLTLTRVHY 277 >gi|295099211|emb|CBK88300.1| pseudouridylate synthase I [Eubacterium cylindroides T2-87] Length = 243 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 2/243 (0%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+GS Y GWQ+Q+N IQ IEKA+ + + + + +GRTD+ VHAL QV H Sbjct: 3 YKVILAYDGSNYAGWQKQENALGIQEVIEKALTTIHKKEIFITASGRTDAKVHALGQVFH 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ ++ P ALNA L + I IL +S+ FHARFSA + Y Y + Sbjct: 63 FEADKKIGPDRYKMALNALL--PEDIRILKVSMEADDFHARFSAKSKRYDYICTYEKENP 120 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + K + L + + + + S I+TI D+ Sbjct: 121 FVYKYKEILNHTLNIEAMRKASEYLVGTHDFTSFSSSKIDPRKPRIKTITRIDIFEENQD 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I FL Q+R +L +VG K + ++++ L +D+ C A P GLY Sbjct: 181 IRFIYEGTGFLRYQVRMMTETLIMVGSNKIDTEEVKRILDKKDKSACRYNASPNGLYLVH 240 Query: 244 VEY 246 V Y Sbjct: 241 VNY 243 >gi|48374280|gb|AAT41969.1| putative t-RNA pseudouridine synthase I [Fremyella diplosiphon Fd33] Length = 268 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 119/242 (49%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+I+Y G+ + GWQRQK ++Q IE AI + G V +HGAGRTD+GVHA QVAHF+ Sbjct: 1 MVIQYLGTHFHGWQRQKQQRTVQEEIETAIAKILGYHVTLHGAGRTDAGVHAAAQVAHFE 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P LN+YL + I I + V ++HARFSA R Y Y I T P Sbjct: 61 ATGLIPPHKWAAVLNSYL--PNDILIRASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLF 118 Query: 126 -EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 LD ++ A + L+G+H F + S + + + G LI Sbjct: 119 VRPFSWHYYYAPLDESLIKAALKPLLGKHHLAAFHRAGSKRSHSWVEVQAAECHRSGPLI 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + A FL+ +R VG L VG G+ T + + +A+ R+E AP +GL V Sbjct: 179 HIEIQADGFLYGMVRLLVGMLVQVGTGQRTLANFTELWKAERREEVKYAAPAQGLCLLRV 238 Query: 245 EY 246 Y Sbjct: 239 GY 240 >gi|163816114|ref|ZP_02207482.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] gi|158448534|gb|EDP25529.1| hypothetical protein COPEUT_02298 [Coprococcus eutactus ATCC 27759] Length = 271 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 108/270 (40%), Gaps = 24/270 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------------------- 38 M Y Y+G+ Y GW+ + N +++G IE + + Sbjct: 1 MTNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRD 60 Query: 39 --TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSI 96 T V +HGAGRTD+GVHA VA L P + LN YL + ++ Sbjct: 61 TKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYLPADICALDVTVAG 120 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + Y + + LD + M+ AA +LVG+HDF Sbjct: 121 DRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHDFR 180 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +F + S +RTI ++ G+ + +R FL +R G+L +G G + Sbjct: 181 SFCGNNKMKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMDAE 240 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + + DR+ GP APP GL VEY Sbjct: 241 HMPEIIVGMDRQLAGPTAPPHGLCLLKVEY 270 >gi|218296263|ref|ZP_03497019.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] gi|218243335|gb|EED09865.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23] Length = 259 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R ++ EY+G+ + G QRQ+ ++QG +EKA+ + G + AGRTD+GVHAL Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHI-GALPKAVAAGRTDAGVHALA 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H DL P + +ALN L + + ++ V FHAR A+ R+Y YR++ R Sbjct: 60 MPFHIDLQSPIPPEKVPEALNRLL--PEDLKVVAAREVAPDFHARKDALWRAYRYRVLLR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--V 177 P L + R + + LD + M A L+GRH+F F + + Sbjct: 118 PHPSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGFAKEETREGVRELLEARLEVLE 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + RSFL Q+R VG+L VG G+ + ++ L+ DR+ G AP Sbjct: 178 GEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAPAT 237 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 238 GLYFLEAAY 246 >gi|323342828|ref|ZP_08083060.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463940|gb|EFY09134.1| tRNA pseudouridine synthase A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 245 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R+ ++Y+GS + GWQ+Q G +Q IE + + E + + G+GRTD+GVHAL Q Sbjct: 1 MMRFKATVQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD V + L +ALN L + I I ++ V+ FHARF + ++Y YR+ Sbjct: 61 VFHFDNVVDMDEKQLFRALNTLL--PNDIVITDIHPVEPNFHARFDVVSKTYEYRL-NMG 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTIDHFDVNS 179 A E+ + K+LD + +R A + VG HDFT+F + + + +RTI +FD+ Sbjct: 118 AYNLFERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRTITNFDLIV 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + ++ FL +R V + G GK + ++ + L+A D+ GL Sbjct: 178 SDDHLNFVIIGDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGL 237 Query: 240 YFDSVEY 246 Y V Y Sbjct: 238 YLKKVNY 244 >gi|218960843|ref|YP_001740618.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] gi|167729500|emb|CAO80411.1| putative pseudouridylate synthase I [Candidatus Cloacamonas acidaminovorans] Length = 274 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + I Y+G+GY GWQ+QKNG +IQ +EK + + G+ + AGRTD+GVH+L Q Sbjct: 3 MARYLIKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AHFD L A N YL D+I +L + V +AR+ A RSY YR+ + Sbjct: 63 YAHFDYSGSMQEKQLFLAFNRYL--PDSIKVLEIMKVSPCLNARYQAYERSYRYRLAKEK 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + L+ E M+ A Q+L+G+HDF+TF + + + I + H ++ Sbjct: 121 TPFNRN-YSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISET 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGL 239 A FLH +R VG+L + + + L+ + R+ AP GL Sbjct: 180 ERYFVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASGL 239 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 240 YLMDVKY 246 >gi|257069454|ref|YP_003155709.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] gi|256560272|gb|ACU86119.1| pseudouridylate synthase I [Brachybacterium faecium DSM 4810] Length = 346 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 117/266 (43%), Gaps = 21/266 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +EKA+ + V AGRTD+GVHA QV Sbjct: 34 TRLRLDLSYDGTDFHGWAAQPGQRTVQGELEKALRRIARIPARVTVAGRTDAGVHARGQV 93 Query: 62 AHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRSY 112 H DL + P +AL + L + + + V F ARF A R Y Sbjct: 94 CHLDLPDDVLATLPGRSPRTPAEALVSRLAGVLPEDVVVHVAREVPDDFDARFGAQWRRY 153 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--- 169 YRI R A + + LD E M A+ L+G HDF ++ A++ Sbjct: 154 RYRISDRPAAHDPLRRDVLRHRRPLDVEAMARASAPLLGEHDFLSYCRPREGATTIRELR 213 Query: 170 --RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL----- 222 R + + LI VVA +F H +RS VG+L VG+G+ + + L Sbjct: 214 ELRWERPGEGRADEGLIVATVVADAFCHHMVRSLVGALLGVGEGRRDESWPAEVLAARTR 273 Query: 223 --QAQDRKECGPLAPPEGLYFDSVEY 246 +D PL PP+GL D V Y Sbjct: 274 EAARRDGVGAAPLCPPQGLTLDHVAY 299 >gi|298491424|ref|YP_003721601.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] gi|298233342|gb|ADI64478.1| tRNA pseudouridine synthase A ['Nostoc azollae' 0708] Length = 275 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 117/245 (47%), Gaps = 3/245 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I+Y G+ + GWQRQ ++Q IE AI + G V +HGAGRTD+GVHA Q+A Sbjct: 12 RVALVIQYRGTHFRGWQRQSCQRTVQEEIETAIATILGYHVTLHGAGRTDAGVHAAAQIA 71 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 HFD LN+YL I I + V+ +HARFSA+ R Y Y I T P Sbjct: 72 HFDATGFIPAHKWATVLNSYL--PPDILIRASASVNDFWHARFSAVSRRYRYTIYTEVLP 129 Query: 123 LAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD ++ A + L+G+H F S + + + G Sbjct: 130 NLFVNPFSWHYYYAPLDESVIQAALKPLLGKHHLAAFHRAGSARSHSWVEVQVAECHRSG 189 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I I + A FL+ +R VG L +G G+ T + + + + R++ APP+GL Sbjct: 190 PFIHIEIQANGFLYGMVRLLVGMLVQLGSGQVTLDNFTEIWKEERREKVKYAAPPQGLCL 249 Query: 242 DSVEY 246 VEY Sbjct: 250 LRVEY 254 >gi|258647412|ref|ZP_05734881.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] gi|260852780|gb|EEX72649.1| tRNA pseudouridine synthase A [Prevotella tannerae ATCC 51259] Length = 256 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 120/246 (48%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + Y+G Y GWQ+Q N S+Q + KAI + + + GAGRTD+ V+A R V Sbjct: 1 MRYFLYFSYDGGNYHGWQQQPNAISVQEVLNKAISTLLQSAISLVGAGRTDTSVNAKRMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD + LN L I++L++ V+K HARF A+ R+Y Y I + Sbjct: 61 AHFDFCCTLPDKFTFR-LNRLL--PPDIAVLDIKQVNKDAHARFDALSRTYHYYIY--KK 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS-F 180 ++ A LD M AA+ L+ DFT+F +H + I + + Sbjct: 116 KDPFKRHYATRYLAELDYTAMNQAAKLLLQVEDFTSFSKLHTDTRTKICHVTKAEWIQEK 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L + A FL +R+ VG+L VG G+ + + K +Q ++R P E L+ Sbjct: 176 EDLWRFEITADRFLRNMVRAIVGTLIEVGRGRMSIEEFSKVIQQKNRCAAAESVPGEALF 235 Query: 241 FDSVEY 246 +++Y Sbjct: 236 LVNIKY 241 >gi|256370635|ref|YP_003108460.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] gi|256009427|gb|ACU52787.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri SMDSEM] Length = 270 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 123/269 (45%), Gaps = 28/269 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ + I Y GS FGWQ QK SIQ +IE + + + + + GAGRTD+GVHA++ Sbjct: 1 MRFFIEISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKIIGAGRTDTGVHAIQMF 60 Query: 62 AHFDLVRE------------------------WVPVILCKALNAYLKISDTISILNLSIV 97 AHFDL + + LN++L ++ I + Sbjct: 61 AHFDLTFDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFLPLNIKIINIFSVKK 120 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 HARF+AI R Y YRI + P + WL ++ + ++ A L DF++ Sbjct: 121 --NIHARFNAISRVYEYRISLSKDPFLFQTSWQWLSKNQIELKILKKGANILKKYKDFSS 178 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 F ++ + I N++ R+ A FL +RS VG+L +G K T D Sbjct: 179 FC--KEKSKKNLCEISTAKWILKKNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIKD 236 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 K ++A++R G AP +GL+ + Y Sbjct: 237 FIKIIEAKNRNLAGITAPAKGLFLIKINY 265 >gi|159901453|ref|YP_001547700.1| tRNA pseudouridine synthase ACD [Herpetosiphon aurantiacus ATCC 23779] gi|159894492|gb|ABX07572.1| tRNA pseudouridine synthase A [Herpetosiphon aurantiacus ATCC 23779] Length = 272 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 120/250 (48%), Gaps = 6/250 (2%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + EY G+ + G Q Q G ++Q +E A +T E AGRTD+GVHAL Sbjct: 1 MSRTLALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH + KA+NA IS+ + FHARFSA +R+Y Y + Sbjct: 61 QVAHIVSDTPRSLDTIAKAINA--ITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFD 176 AP A GR + LD M+ A L+G HDF F + + Sbjct: 119 PAPSATLSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAGHEGSTTRTCMLAQLRPA 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + + A +FL +R+ VG+L +VGDG+ + + + ++DR+ GP APP Sbjct: 179 EWLGRPVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAPP 238 Query: 237 EGLYFDSVEY 246 +GLY +S+ Y Sbjct: 239 QGLYLESIGY 248 >gi|326522897|dbj|BAJ88494.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 328 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 127/254 (50%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 47 RKWRMVIAYDGTKFKGWQYQPSPPTIQCFLEKALMRITKLDRKELCLVGAGRTDTGVHAR 106 Query: 59 RQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + A+N L I + +S +FHAR S + Y Y+I Sbjct: 107 GQVAHFTTPFAYHCLDSFHSAINGLL--PPDIRVREISAACGEFHARTSTKSKIYHYKIY 164 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHF 175 A+ L+ M+ AA H VG HDFT+F + + + SPI+ I F Sbjct: 165 NEAVMDPFHTNYAYHSAHKLNPHAMQEAANHFVGVHDFTSFANAVHNDRVRSPIKKISRF 224 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL-- 233 DV +I++ V FL+ Q+R+ V L VG + K + A+DRKE + Sbjct: 225 DVTKMDAIIQLEVEGTGFLYRQVRNMVALLIQVGREGLPPEIVPKIIAAKDRKELAKVAL 284 Query: 234 -APPEGLYFDSVEY 246 APP GLY SV Y Sbjct: 285 SAPPHGLYLMSVNY 298 >gi|320353071|ref|YP_004194410.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] gi|320121573|gb|ADW17119.1| tRNA pseudouridine synthase A [Desulfobulbus propionicus DSM 2032] Length = 274 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 121/257 (47%), Gaps = 13/257 (5%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M+R ++I Y+G Y GWQRQ+ G +IQ +E+ + + E + +HGAGRTD+GVHAL Sbjct: 1 MLRTIRLLIAYDGGNYCGWQRQRQGEATIQEELEQRLSHLCEEPITLHGAGRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAHF V K LNA L I IL FH+RFSA+ ++Y Y T Sbjct: 61 GMVAHFHTRAAIPVVAFFKGLNALL--PPDIRILAAEEASATFHSRFSALGKTYRYDFFT 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI------RTI 172 + P D + +R A LVGRHDF++F + + I RT+ Sbjct: 119 GAVQCPSTRLHRAHFPGPFDPKRLRTALTQLVGRHDFSSFERSGSRDKTAIDGRGAVRTL 178 Query: 173 DHFDVNS---FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + + V FL +R G+L +G GK + L A+DR + Sbjct: 179 YEIRCSPRLGCEDFWSLHVTGDGFLRQMVRILAGTLIEIGHGKRPEEAIAAILAARDRTQ 238 Query: 230 CGPLAPPEGLYFDSVEY 246 G AP GL+ + + Y Sbjct: 239 AGLTAPACGLFLERLYY 255 >gi|195953438|ref|YP_002121728.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] gi|229470758|sp|B4U9D9|TRUA_HYDS0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|195933050|gb|ACG57750.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1] Length = 247 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 11/252 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI------FLVTGEIVVVHGAGRTDSG 54 M Y I + G+ Y GWQ Q N +IQ +E+ + + + G RTD G Sbjct: 1 MKNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLYYIVNKKKPIKQKIRAIGCSRTDKG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA+ V + + + L KALN+ L I I N+ V +F++RF A++++Y+Y Sbjct: 61 VHAIEFVFNVKMEFDKDLNFLRKALNSAL--PKDIKIHNIEEVPLEFNSRFDALKKTYIY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ + + RA L+ K D M + +G DF F + + + ++++ Sbjct: 119 KLFFDEKNSPFFQDRAMLVYKPTDLGKMMEISHLFLGYKDFRGF-TKELEDENGYCSVEN 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 L+EI + A FL +R VG++ G + D+ L+A+ + A Sbjct: 178 ITFKVDYPLVEISITANRFLRYMVRRMVGTMLSYAQGLISIDDVNDFLKAK--RVSNHTA 235 Query: 235 PPEGLYFDSVEY 246 GLY V Y Sbjct: 236 KAHGLYLKKVYY 247 >gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] gi|123737799|sp|Q2JFE6|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3] Length = 274 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ Q Sbjct: 6 VRLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-R 119 VAH DL + L + LN L + I+ L+ F ARFSA+ R Y+YRI Sbjct: 66 VAHVDLPDDVPLGGLARRLNGVL--DRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAP 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ LD M AA LVG HDF F A++ + + Sbjct: 124 YGAEPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAFCRRREGATTVRTLLRLDVLRR 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ V A +F H+ +R+ VG+L VG+G+ L R +AP GL Sbjct: 184 PEGVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVTVAPAHGL 243 Query: 240 YFDSVEY 246 V Y Sbjct: 244 TLVDVRY 250 >gi|332712143|ref|ZP_08432071.1| pseudouridylate synthase I [Lyngbya majuscula 3L] gi|332348949|gb|EGJ28561.1| pseudouridylate synthase I [Lyngbya majuscula 3L] Length = 277 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 114/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ ++GWQRQ S+Q IE + V + ++GAGRTD+GVHA QV Sbjct: 10 QRIALVIQYLGNNFYGWQRQPQHRSVQSEIETVLSSVQQRAITLYGAGRTDTGVHAAAQV 69 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF+ LN+ L + I + ++V + +HARFSAI R Y Y I T Sbjct: 70 AHFNATGPIPAHRWAAILNSRL--PEDILVRASALVSQDWHARFSAIWRRYRYTIYTDAC 127 Query: 122 PLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W ++ D ++ A + L+G+H F + S + + Sbjct: 128 PNLFVQPFCWHYYQAPLDESLIQAALKPLLGKHHLAAFHRSNSGRSHSWVNVQAAECYRN 187 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I I + A FL+ +R VG L VG GK T Q R + +P +GL Sbjct: 188 GPFIHIEIQANGFLYGMVRLLVGMLVQVGIGKLTPEQFTDIWVNQQRDKVKHASPAKGLC 247 Query: 241 FDSVEY 246 V Y Sbjct: 248 LLRVGY 253 >gi|193212885|ref|YP_001998838.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] gi|193086362|gb|ACF11638.1| tRNA pseudouridine synthase A [Chlorobaculum parvum NCIB 8327] Length = 238 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 110/240 (45%), Gaps = 5/240 (2%) Query: 8 IEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 IEY+G+ Y GWQRQ + ++QG IE+ + +T E V + GAGRTD GVHA QVA F + Sbjct: 3 IEYDGTDYSGWQRQPGDVVTVQGEIERVLGRITQEPVSIDGAGRTDRGVHARGQVASFAV 62 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 E + + N+ L TI I ++ V + FHARFSA YR + + P A++ Sbjct: 63 ASEMPLGRMMHSANSLL--PSTIRITSMRQVPESFHARFSATS--REYRYVLLERPSAID 118 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 A D M A LVG HDF F + T+ G Sbjct: 119 SRFAGCSHGKPDVVLMNRLAAMLVGTHDFAAFSKETPDQQGTLCTVTEARWYRSGRFHVF 178 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R+ A FL + +R V + VG G+ + + + L R A P GL+ V Y Sbjct: 179 RIEANRFLRSMVRFLVAGMIEVGMGRLSEEEFSRMLVDGGRPASLVPADPAGLFLWKVRY 238 >gi|62184804|ref|YP_219589.1| tRNA pseudouridine synthase A [Chlamydophila abortus S26/3] gi|81313017|sp|Q5L6V3|TRUA_CHLAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|62147871|emb|CAH63617.1| putative tRNA pseudouridine synthase a [Chlamydophila abortus S26/3] Length = 268 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ N SIQ IE ++ V G+ + V +GRTD+ VHA Q Sbjct: 1 MTQVVILLAYQGTAYAGWQRQPNDLSIQEVIENSLAQVVGKRIPVTSSGRTDAEVHAFGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 VAHF D + + K LNA L I I ++ + D +FH+RFSAI + Y Y + Sbjct: 61 VAHFSQPDHPQFSQASSIKKMLNALL--PKDIVIRDVVLGDDKFHSRFSAIAKEYRYVLT 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL E+ A+ L + M+ AQ+L+G HDF +F + +S IRT+ + D+ Sbjct: 119 RSPKPLPWERYFAYYPRHHLKTDLMQEGAQYLLGTHDFASFANHGRDYTSTIRTLFNLDI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + I FL+ +R+ VGSL + GK+ +++ L ++R++ P AP Sbjct: 179 VDHGETVTIICRGNGFLYKMVRNIVGSLLDISRGKYPPEYIQEILMQKNRRQGPPAAPSH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLYHVCY 247 >gi|255281297|ref|ZP_05345852.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] gi|255268254|gb|EET61459.1| tRNA pseudouridine synthase A [Bryantella formatexigens DSM 14469] Length = 280 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 35/278 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT--------------------- 39 + + + Y+G+ Y GW+ + +IQG +E + + Sbjct: 3 QNFKLTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVSC 62 Query: 40 -----------GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDT 88 V V GAGRTD+GVHA A+ L +P + LN YL + Sbjct: 63 NPGAADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYLNRYL--PED 120 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I + + IV +FH+R++A ++Y Y T ++ +++ K+ D M+ AA + Sbjct: 121 ICVREVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGY 180 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L G HDF +F S +RTID ++ + + FL +R G+L Sbjct: 181 LCGTHDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLET 240 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G G+ + + + L A+ R G LAP +GL V+Y Sbjct: 241 GYGRRSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >gi|256544630|ref|ZP_05472002.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] gi|256399519|gb|EEU13124.1| tRNA pseudouridine synthase A [Anaerococcus vaginalis ATCC 51170] Length = 252 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 112/247 (45%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QKN ++Q +E AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + L YL D I L VDK FHARFS ++Y Y I + Sbjct: 64 INFLTAKIIRADKFHFHLKKYL--PDDILALESKKVDKNFHARFSVKTKTYKYVISLDKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L G HDF F + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLN 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + A SFLH Q+R GSL + GK + D + + + P GLY Sbjct: 182 ENRLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLY 241 Query: 241 FDSVEYS 247 DS++YS Sbjct: 242 LDSIDYS 248 >gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C] gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C] Length = 287 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 111/249 (44%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V E V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRTLRTVQGELESALQTVMRLKEPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA FDL E K L I + + + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDLAEEVWAEHHDKLLRRLAGRLPHDIRVWKAAEAPEGFNARFSAIWRRYAYRVGD 129 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +A L +G LD + M AA LVG HDF + A++ Sbjct: 130 HRAGVDPLRRGHVLWHQWPLDVDAMNEAAAALVGEHDFAAYCKKREGATTIRTLQQLSWE 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ V A +F H +RS VG+L VGDG + L A R + P Sbjct: 190 RGEDGVVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAAVRDSSVHVVKPH 249 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 250 GLTLEEVGY 258 >gi|86609047|ref|YP_477809.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557589|gb|ABD02546.1| tRNA pseudouridine synthase A [Synechococcus sp. JA-2-3B'a(2-13)] Length = 285 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I+Y GS ++GWQRQ ++QG +E+AI G V ++GAGRTD+GVHA QV Sbjct: 4 RRIALRIQYLGSRFYGWQRQAARRTVQGVLEEAIASRAGHPVTLYGAGRTDTGVHAAGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHFD V + LN L + + +L + V +HARFSA R Y Y I+ R+ Sbjct: 64 AHFDTTSGIPAVEWSRVLNDCL--PEDVVVLASAQVPDSWHARFSARWRRYRYLILNRER 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + +W + L E M A L+G H FR + G Sbjct: 122 PDVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLG 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGPLAPPEGL 239 +LI I V A FL+ +R VGSL++VG G+ + Q D APP+GL Sbjct: 182 DLISIEVQASGFLYRMMRLLVGSLEVVGRGQLSPAQFVHLWQHNDWSQMRTRYSAPPQGL 241 Query: 240 YFDSVEYS 247 V Y+ Sbjct: 242 CLTDVGYA 249 >gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a] gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I) (Pseudouridine synthase I) (Uracil hydrolyase) [Frankia alni ACN14a] Length = 288 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 105/246 (42%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + I Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA Q Sbjct: 20 VRLRLDIAYDGTPFAGWARQPGQRTVQGDVEDALIRVARLAAVRLTVAGRTDSGVHAAGQ 79 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH DL + L + LN L S ++ L + + R Y Sbjct: 80 VAHVDLPTDVPLGGLARRLNGVLDRSVRVTGLAPAPAGFDARFSALSRRYVYR-ITDAPF 138 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + P+ LD M AA LVG HDF F A++ + + Sbjct: 139 GAEPLRRFDTLAWPRPLDVPAMASAALLLVGEHDFAAFCRRREGATTVRTLLRLDVLRRP 198 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ V A +F H+ +R+ VG+L VG+G+ L+ R +AP GL Sbjct: 199 DGVVVADVEADAFCHSMVRALVGALLAVGEGRRPPQWPAAVLRRGLRDPAVTVAPAHGLT 258 Query: 241 FDSVEY 246 V Y Sbjct: 259 LVEVRY 264 >gi|318042539|ref|ZP_07974495.1| tRNA pseudouridine synthase A [Synechococcus sp. CB0101] Length = 294 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y+G+ Y GWQRQ S+Q ++E+AI + + V AGRTD+GVHA Q Sbjct: 22 RRIALCLQYDGAPYCGWQRQPRDPSVQETLERAIAALDPRRPLSVQAAGRTDTGVHAAAQ 81 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + + V +HA FSA R Y Y + + Sbjct: 82 VVHFDAEGPIPAQRWPAALNGRL--PASIRVRAGAEVPADWHACFSASYRRYRYTLYNAR 139 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD + MR A + ++G HDF F S T+ V Sbjct: 140 LPNLFLAPWSWHRYQLRLDEQLMRQALEGMLGEHDFAAFERAGSSRSHSRTTLQEVTVER 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LIE+ + A FL+ +R +G L VG+ + + E+ +++ R E APP GL Sbjct: 200 RGDLIEVELQASGFLYGMVRLVMGQLVAVGEQRLSLAAFERRWRSRARDEVKEAAPPHGL 259 Query: 240 YFDSVEY 246 V Y Sbjct: 260 TLLRVGY 266 >gi|157965031|ref|YP_001499855.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] gi|157844807|gb|ABV85308.1| tRNA pseudouridine synthase A [Rickettsia massiliae MTU5] Length = 246 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 105/246 (42%), Positives = 149/246 (60%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + IEY G+ GWQ+Q S+Q +E+AI+ +GE V++ G+GRTD+GVHA+ Q Sbjct: 2 MYRYKITIEYLGTDLAGWQKQAGVMSVQQILEEAIYKFSGEQVILFGSGRTDAGVHAIGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFDL + P + A+N + + + N + FHARFSA R Y+YRII R Sbjct: 62 VAHFDLSKYLEPHKIITAINYF-ARPYAVGVWNCELAPNNFHARFSATSRYYIYRIINRP 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P ++ RAW I LD M+ A +L+G+HDFT+FR+ CQ+ SPI+T+ ++ Sbjct: 121 YPSVIDLNRAWWISSPLDVPAMQQATAYLLGKHDFTSFRASSCQSKSPIKTLTELNIIKE 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I++ + A SFLH +R+ VGSL LVG W + ++ L+A+DRK GP AP GLY Sbjct: 181 DEEIKLYLSAPSFLHHMVRNIVGSLVLVGKNIWQAEQIKDVLEAKDRKAAGPTAPAAGLY 240 Query: 241 FDSVEY 246 F Y Sbjct: 241 FVKAAY 246 >gi|153815016|ref|ZP_01967684.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] gi|145847584|gb|EDK24502.1| hypothetical protein RUMTOR_01233 [Ruminococcus torques ATCC 27756] Length = 260 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 116/261 (44%), Gaps = 17/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCL--PPDIRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-------------- 165 + + P D MR AA +L G H F + Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAEYTDKKDNRSVRRTIYSIMIRDE 178 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 D GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 179 RKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTG 238 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 DR + G LAP GL+ V Y Sbjct: 239 DRSKAGFLAPAGGLFLREVRY 259 >gi|218132910|ref|ZP_03461714.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] gi|217991783|gb|EEC57787.1| hypothetical protein BACPEC_00771 [Bacteroides pectinophilus ATCC 43243] Length = 256 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 12/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+GS Y GWQR + ++I+ + AI TGE + G+GRTD+GVHAL Sbjct: 1 MNNYRLTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A+F + + + LN+ L + I + V FH+R SA + Y+YRI Sbjct: 61 QTANFRCRQRLDEMHFTEELNSML--PEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEIS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + +W D + M AAQ ++G HDF F + ++T+ +++ Sbjct: 119 EPANPFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVYDINIHK 178 Query: 180 FGNL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + IE+ FL+ +R G++ G G+++ D++ L R Sbjct: 179 DYSCLWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRSMS 238 Query: 231 GPLAPPEGLYFDSVEYS 247 G LAP GL+ EYS Sbjct: 239 GQLAPARGLFLKKAEYS 255 >gi|269122416|ref|YP_003310593.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] gi|268616294|gb|ACZ10662.1| tRNA pseudouridine synthase A [Sebaldella termitidis ATCC 33386] Length = 244 Score = 158 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 117/246 (47%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M ++ EY+GS + G+QRQ N ++QGSIE+ I E V + +GRTD GVHAL Q Sbjct: 1 MKNIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + + P I+ LN L I + + D FHARFSA R+YLY + + Sbjct: 61 VSNFFMEKSISPDIIKGILNRALSGK--IRVTDAKEADSDFHARFSAKTRTYLYIMKLKD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + E ++ + +GRH+F +FR +P R I++ Sbjct: 119 EITPFESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEE 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + +SFL T IR +GS V K + L D LAP EGLY Sbjct: 179 DKRLFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLY 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LYKVNY 244 >gi|294012442|ref|YP_003545902.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] gi|292675772|dbj|BAI97290.1| tRNA pseudouridine synthase A [Sphingobium japonicum UT26S] Length = 248 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 128/246 (52%), Positives = 164/246 (66%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q ++E AIF VTGE V VH AGRTD+GVH L Sbjct: 1 MARFAFTVEFDGRPFMGWQRQAHGPSVQQAMEDAIFSVTGERVAVHAAGRTDAGVHGLGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ ++ P L +ALNA L+ ++IL V +HARFS RSY+YRI+ R+ Sbjct: 61 RAHADIAKDMTPFRLMEALNARLR-PAPVAILACETVPDDWHARFSCTGRSYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL E G AW + + LD E M+ AAQ LVGRHDFTTFRS+HCQA SP++T+D DV Sbjct: 120 APLTWESGLAWRVIQPLDAEAMQRAAQLLVGRHDFTTFRSVHCQAESPVKTLDRLDVERA 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + I ARSFLH Q+RS VG L +VG G+W+ DLE A A+DR G APP+GLY Sbjct: 180 GDRLAIHAEARSFLHHQVRSMVGCLVMVGMGRWSVGDLEAARDAKDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F S Y Sbjct: 240 FVSAHY 245 >gi|317501544|ref|ZP_07959740.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088594|ref|ZP_08337505.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] gi|316897055|gb|EFV19130.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407551|gb|EGG87051.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 3_1_46FAA] Length = 260 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 116/261 (44%), Gaps = 17/261 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ + +IQG +E+ + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A L + + + +N L I IL++ +V FHAR SA+ + Y YRI T Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCL--PPDIRILDVELVKNGFHARKSAVGKVYEYRIDTG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-------------- 165 + + P D MR AA +L G H F + Sbjct: 119 IKQDVFTRKYSGHFPGEPDLARMREAAGYLTGTHFFAGYTDKKDNRSVRRTIYSIMIRDE 178 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 D GN I IR FL+ +R G+L VG + T+ +++AL Sbjct: 179 RKDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTG 238 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 DR + G LAP GL+ V Y Sbjct: 239 DRSKAGFLAPAGGLFLREVRY 259 >gi|46446316|ref|YP_007681.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] gi|51316630|sp|Q6MDE3|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia amoebophila UWE25] Length = 262 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 6/250 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G YFGWQ+ G S++ +++ ++ + + + A RTD GVHA Q Sbjct: 15 MQNIKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHARGQ 74 Query: 61 VAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +F +LN+ L + IL+ + FH + + + Y Y I Sbjct: 75 IVNFLTTKSITDLQKFILSLNSLL--PTDLRILSAEKMPSTFHPTLNCVAKEYCYYICYD 132 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH---CQASSPIRTIDHFD 176 L + +W P L M A L+G HDF+ F + R Sbjct: 133 FVQLPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIHL 192 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + IR+ FL+ +R+ VG+L +G GK D+ LQ+QDRK G AP Sbjct: 193 EVLNHKRLCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAPA 252 Query: 237 EGLYFDSVEY 246 GL+ +V Y Sbjct: 253 HGLFLQTVLY 262 >gi|297620993|ref|YP_003709130.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] gi|297376294|gb|ADI38124.1| tRNA pseudouridine synthase A [Waddlia chondrophila WSU 86-1044] Length = 254 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I Y+G+ + GWQ K G SI+G ++KA+ ++ E + ++GA RTD+GVHAL Q+ Sbjct: 5 FNFLLTIAYDGTPFLGWQETKEGPSIEGELKKALRIILKEEIKLNGASRTDAGVHALGQL 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F ++ L K++NA L I + + V+ FHA + + Y YR+ Sbjct: 65 ANFHTTKKPHLFTLLKSINALL--PGEIKVTAIEEVEASFHATLNNTGKQYRYRLSFGPV 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP--IRTIDHFD-VN 178 + R W IP LD E MR+AA+ L G HDF F ++ + IRT+ Sbjct: 123 QFPHVRHREWHIPGKLDIEAMRLAAKSLEGTHDFKAFCNVKKNDTYDSTIRTLSKLSLAE 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +E+ + FL+ R+ VG+L +G + L+K + DR + GP AP G Sbjct: 183 LENDTLEVIMEGNHFLYKMARNIVGTLVYIGKKRIQLNTLKKLVLNGDRTQLGPTAPAHG 242 Query: 239 LYFDSVE 245 L V Sbjct: 243 LTLFHVF 249 >gi|163783710|ref|ZP_02178697.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] gi|159881035|gb|EDP74552.1| pseudouridine synthase I [Hydrogenivirga sp. 128-5-R1-1] Length = 239 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 7/245 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + + + G+ Y GWQ Q ++QG++++A+ V GE + V G RTD+GVHA Sbjct: 1 MNNYMLRLAFVGTNYSGWQIQPGVPTVQGTLKEALETVFGEEIRVIGCCRTDAGVHAEDY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA+F ++E L +ALN+ L I + + +VD+ F++R+S ++YLYR+ Sbjct: 61 VANFRSIKELECEKLLRALNSLL--PKDIGVYEVKLVDENFNSRYSVKGKTYLYRLWNSF 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +W + + +D + A + + GRHDF F + + Sbjct: 119 VRNPFLYPFSWSVTRRVDLNLLSEALEIVSGRHDFRGF--AKLEEDKTTVIELETKLAVS 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LIE+R A FL +R VG++ +GK ++ +L + L+ + C AP +GL Sbjct: 177 GDLIELRFTASHFLRYMVRRLVGAIVKRAEGKVSTGELYEYLKGK---HCPHTAPAKGLT 233 Query: 241 FDSVE 245 + V Sbjct: 234 LERVH 238 >gi|331699143|ref|YP_004335382.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] gi|326953832|gb|AEA27529.1| tRNA pseudouridine synthase A [Pseudonocardia dioxanivorans CB1190] Length = 263 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 114/246 (46%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QV Sbjct: 1 MRYRLDIAYDGTDFSGWAPQPGRRTVHGVLTDALQRLVRAPVALTVAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 AH DL E P L + L + + + ++ V +F ARFSA+RR Y+YR+ T Sbjct: 61 AHVDLSGELEPDRLVRRLAR--LLPPDVRVRAVTAVPPEFDARFSALRRHYVYRVTTAPW 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L P +D + + A+ L+G HDF F A++ + Sbjct: 119 GADPLRARDTLAWPHPIDLDAVARASTALLGEHDFAAFCRRREGATTIRELLRFAWSVDA 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + A +F H+ +RS VG++ VG G+ L +R +AP GL Sbjct: 179 DGVVRAELSADAFCHSMVRSLVGAMLDVGRGRRAVEWPAGLLDRAERASDVAVAPAHGLT 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVGVDY 244 >gi|237786326|ref|YP_002907031.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] gi|237759238|gb|ACR18488.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM 44385] Length = 298 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 92/256 (35%), Gaps = 11/256 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ + S+QG IE+A V + V + AGRTD+GVHA QV Sbjct: 23 VRLRLDIAYDGTDFHGWARQNDVRSVQGDIEQAFQTVVRQPVQLVVAGRTDAGVHASGQV 82 Query: 62 AHFDLVREWVPVILCK--------ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + L+ I + + Y Sbjct: 83 AHVDIPRGILNTRSIHNDPSTLVSRFARLLRPDVRIRGCSFAPDGFDARFSALRRHYVYR 142 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 A + A A + R+ + Sbjct: 143 VTTNRAGALPTRARDTAVWDRPVNLDSMNNAAEVLVGLHDFAAFCRARPHATTIRDLQHF 202 Query: 174 HFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + S ++ E RV A +F +RS VG+ VG+GK +E L R Sbjct: 203 SWHEVSTAVEPDVYEARVTADAFCWNMVRSIVGASLAVGEGKRPDGFMEDMLAHDSRHPM 262 Query: 231 GPLAPPEGLYFDSVEY 246 P+AP GL V+Y Sbjct: 263 VPVAPANGLTLTGVDY 278 >gi|42559832|sp|Q8NSV0|TRUA_CORGL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21323332|dbj|BAB97960.1| Pseudouridylate synthase (tRNA psi55) [Corynebacterium glutamicum ATCC 13032] Length = 289 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 96/258 (37%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 1 MRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + + + Sbjct: 61 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLLPDDIRVHGVRFAEPGFDARFSAMRRHYV 120 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y A A A L ++ + Sbjct: 121 YRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHATTVRELQ 180 Query: 172 IDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + + + E VVA +F + +RS VGS VG+G+ S + L A +R Sbjct: 181 KFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLDASERS 240 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 241 PMVPVAPAKGLSLVGVDY 258 >gi|257470657|ref|ZP_05634747.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|317064863|ref|ZP_07929348.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|313690539|gb|EFS27374.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] Length = 242 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 113/246 (45%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL Q Sbjct: 1 MRNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLLDIVLREKVNMISAGRTDRGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L ALN L I I + D F++RF A R+Y Y I Sbjct: 61 VSNFLTSSPIPVEKLKHALNKGL--PLDIEIFEVEDADIDFNSRFMAKDRAYRYVI--SW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E L+ + +D N + LVG +DF FR C + + IR I Sbjct: 117 IKNPFESRYVTLVNEKIDKNNFVKILEPLVGVNDFNNFRLSDCGSKTSIREIYSITAEEK 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I + SFL +QIR +G+ V G L+ L+ ++ +A P GLY Sbjct: 177 ENKLIINIKGNSFLKSQIRIMMGTALDVYFGNRDENYLKNMLKNPNKDFIKKVADPYGLY 236 Query: 241 FDSVEY 246 V Y Sbjct: 237 LSEVNY 242 >gi|332300500|ref|YP_004442421.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] gi|332177563|gb|AEE13253.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica DSM 20707] Length = 262 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 10/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQSISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P + + L L+ ++ + I ++ Y Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATS----RRYHYYISA 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 W D M A +H +G HDFT+F +H Q T+ Sbjct: 122 CSNPFWSDYCWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAP 241 Query: 236 PEGLYFDSVEY 246 L+F Y Sbjct: 242 ARALFFVEATY 252 >gi|254424035|ref|ZP_05037753.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] gi|196191524|gb|EDX86488.1| tRNA pseudouridine synthase A [Synechococcus sp. PCC 7335] Length = 299 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 110/248 (44%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R ++I+Y G+ + GWQRQKN ++Q IE I V G + GAGRTD+GVHA Q Sbjct: 27 QRVALVIQYKGTHFHGWQRQKNAKRTVQAEIESVIASVLGRKPALVGAGRTDAGVHAAAQ 86 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHF LN L D I + + V +HA+FSA R Y Y T + Sbjct: 87 VAHFAAPIVIPAERWAIILNDRL--GDDIVVRASTRVASDWHAQFSANWRRYRYTFYTSK 144 Query: 121 APLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + W + D M A Q ++G H+ F + + Sbjct: 145 YPNLFVQPYVWHYYRQRLDENLMLAALQPMMGYHNLLAFHRTGSDRTHSWVELQDVQCTR 204 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I + A+ FL+ +R +G + VG+ + + + Q + R APP+GL Sbjct: 205 SGDFVRIELQAKGFLYGMVRLIMGLIVQVGERRLSPKEFTAIWQKRRRDLVKYSAPPQGL 264 Query: 240 YFDSVEYS 247 V YS Sbjct: 265 CLLRVGYS 272 >gi|160872663|ref|ZP_02062795.1| tRNA pseudouridine synthase A [Rickettsiella grylli] gi|159121462|gb|EDP46800.1| tRNA pseudouridine synthase A [Rickettsiella grylli] Length = 264 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y G Y GWQ Q IQ +E+AI V V + AGRTD GVHAL QV Sbjct: 1 MRIAFGISYQGGAYHGWQSQTKLPCIQTYLERAISRVADHSVRLQCAGRTDKGVHALSQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD N+YL I + + +V+ FHARFSA+ R Y Y I R Sbjct: 61 VHFDTDVWRSKKSWLFGSNSYL--PPDIRVNWVQVVEDTFHARFSALARRYRYIIYNRHL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL L+ ++M AAQ+LVG HDF++FR+ CQA+ +R I H V G Sbjct: 119 KSALWNAYTSHCCYPLNEKDMHRAAQYLVGEHDFSSFRAASCQANHALREIQHIQVKRHG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + + + A +FLH +R+ L L+G GK ++ ++ L AQ+RK A P GLY Sbjct: 179 DYVIMDIQANAFLHHMVRNISAVLMLIGQGKKSTLWAQEVLFAQNRKMADVTASPTGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 SHVIY 243 >gi|283768478|ref|ZP_06341390.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] gi|283104870|gb|EFC06242.1| tRNA pseudouridine synthase A [Bulleidia extructa W1219] Length = 320 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 105/246 (42%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y G+ Y GWQ QK G+SIQ IE + + E V +GRTD+ V+AL Q Sbjct: 1 MRYFKAIVAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + +++L I + + VD+ FHARF +++YLYRI Sbjct: 61 CFQFQSEKNIDSYRWLGIFHSFL--PKDIYVKQVEEVDETFHARFLVEQKTYLYRIHLGD 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + L E + + S + + +RTI ++ Sbjct: 119 YDVFQKDDSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRKI 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +E+ + +L +R VG+ VG GK T ++++ L R AP +GL Sbjct: 179 SDHLELEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGLC 238 Query: 241 FDSVEY 246 V Y Sbjct: 239 LKEVSY 244 >gi|227879273|ref|ZP_03997143.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] gi|227861167|gb|EEJ68816.1| tRNA pseudouridine synthase A [Lactobacillus crispatus JV-V01] Length = 256 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 130/245 (53%), Gaps = 6/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVAHF 64 M + Y+G + G+Q Q + ++QG+IE A+ +T G+ V+V G+GRTD+GVHA+ QV HF Sbjct: 1 MTMAYDGHLFHGFQLQPDQRTVQGTIEDALKKMTKGKRVIVQGSGRTDAGVHAVGQVIHF 60 Query: 65 DLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D + +P + A+N+ + I N IV+ FHAR+S + Y YR+ Sbjct: 61 DYPGKTIPANRMILAMNSM--MPTDIIFNNCQIVNDDFHARYSIKGKWYRYRVSLDHFVN 118 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 ++ P LD E M+IAAQ L+G+HDFT+F + + +RTI + + Sbjct: 119 PFKRFYTGHFPYPLDIEKMQIAAQDLLGKHDFTSFAASGGRIEDKVRTIYYVKITEDKKD 178 Query: 184 IE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 E + FL+ +R V +L +G+ + DL++ + A+DR+E A GLY Sbjct: 179 NEVIFDFIGSGFLYNMVRIMVAALLEIGNDRRPVHDLQRVIAAKDRQEVRQTAHASGLYL 238 Query: 242 DSVEY 246 V Y Sbjct: 239 YHVFY 243 >gi|297192674|ref|ZP_06910072.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] gi|197721671|gb|EDY65579.1| tRNA pseudouridine synthase A [Streptomyces pristinaespiralis ATCC 25486] Length = 286 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 112/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q G ++QG IE A+ VT G + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQAGGRRTVQGEIEDALRTVTRSGTTYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL E K L S + I +++ + F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPSELWAEHREKLLKRLAGRLSRDVRIWSVAEAPEGFNARFSAIWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+ LVG HDF + A++ Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVAAMNEASAGLVGEHDFAAYCKKRDGATTIRTLQQLSW 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +I V A +F H +RS VG+L VGDG + K L A R + P Sbjct: 190 ERDPSGVITATVKADAFCHNMVRSLVGALLFVGDGHRPAEWPAKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|319654901|ref|ZP_08008976.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] gi|317393464|gb|EFV74227.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2] Length = 269 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R+ I Y+G+ + G+Q Q ++QG +E+A+ + GE + V +GRTD+GVHA Sbjct: 1 MQRFKCNITYDGTHFAGYQVQPGKRTVQGELERALKKLHKGEDIKVTASGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN+ L D ++I+ V FH RF A + Y Y + Sbjct: 61 QVIHFDSPLNIPIEKWEIALNSLL--PDEVAIVGAETVPDDFHVRFDAKGKEYRYFVHCS 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ A+ L+ + ++ AA L+G HDFT+F S + +R + +V Sbjct: 119 SRRDPFKRHYAYQYSYPLNTDAIKQAAADLIGTHDFTSFCSAKTEVEDKVRELQEIEVQE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +++ R FL+ +R G+L VG G+ + L+ + Sbjct: 179 KEDMLIFRFRGTGFLYNMVRILAGTLLEVGSGERDPDSMPSVLKEK 224 >gi|296268583|ref|YP_003651215.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] gi|296091370|gb|ADG87322.1| tRNA pseudouridine synthase A [Thermobispora bispora DSM 43833] Length = 294 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 76/267 (28%), Positives = 117/267 (43%), Gaps = 22/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R+ + + Y+G+ + GW RQ ++QG +E A+ + + AGRTD+GVHA Sbjct: 6 VRFRLDLGYDGTDFQGWARQPGLRTVQGELEAALATLLRLEAPPRLTVAGRTDAGVHARG 65 Query: 60 QVAHFDLVREWVPVILCKA-------------LNAYLKI------SDTISILNLSIVDKQ 100 QV H DL + ++ + L + L + + +S+ Sbjct: 66 QVVHVDLPLAALAILEPRGRETATPPAERLPELCSALVRRLAAVLPPDVRVFAVSVPPDG 125 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R Y YR+ + + R PK LD E M A+ L+G HDF F Sbjct: 126 FDARFSALCRRYCYRVCDAPGGVDPLRRREVLWYPKPLDVELMNAASVRLLGEHDFAAFC 185 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A++ +IE VVA +F H+ +RS VG++ VG+GK Sbjct: 186 KKREGATTIRELRRFEWARRDDGIIEATVVADAFCHSMVRSLVGAVLAVGEGKRPVEWPA 245 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 + L R +AP GL + V Y Sbjct: 246 EVLARAVRDSAVRVAPAHGLTLEEVRY 272 >gi|326792524|ref|YP_004310345.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] gi|326543288|gb|ADZ85147.1| tRNA pseudouridine synthase A [Clostridium lentocellum DSM 5427] Length = 245 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + ++I+Y+GS Y G+Q Q++ ++Q IE + +T E V + G RTD GVHA Sbjct: 1 MRNFKIVIQYDGSRYKGFQLQRDTDLTVQAKIEAVLEKMTEEQVEIIGCDRTDVGVHAEN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VA F + L +L + I + ++ VD++FHAR++ ++Y Y I Sbjct: 61 YVASFKTECTLSTACMLDYLYEFL--PEDIVVKSIEEVDERFHARYNVKAKTYEYTINCG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ D ++M A G HDF +F S+ S ++TI+ ++ Sbjct: 119 AQRNVFNRKYVHHMSENFDLKSMNEVAAVFKGTHDFQSFTSLKPNGKSTMQTINEIEIIQ 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G++++IRV A FL R +G++ G G T+ ++ + + R P+A P+ L Sbjct: 179 KGDILQIRVTADDFLLHMPRMIIGAIVEAGKGTITAQQTQEVMDKKQRATGYPMAKPKAL 238 Query: 240 YFDSVEY 246 V+Y Sbjct: 239 SLVEVKY 245 >gi|256827610|ref|YP_003151569.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] gi|256583753|gb|ACU94887.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641] Length = 273 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 83/256 (32%), Positives = 116/256 (45%), Gaps = 10/256 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M ++I YNG+ + G+ RQ+ + ++QGS+E+A+ L+ V AGRTD+GVHA Sbjct: 1 MATIALLISYNGAPFHGFARQEGDLLTVQGSLEEALSLLYRREVETVCAGRTDTGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F++ E + +L L D I I L F ARF A R Y Y I Sbjct: 61 QVVTFEVTPEELASHTPHSLIRSLNALTHDAIGIRQLRRAPDGFSARFDAKSRHYRYFIS 120 Query: 118 TRQAPL--ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT---- 171 P + SLD M AA +LVG HDF +F A P R Sbjct: 121 DGSVPPLVMRDFCWQVRGGVSLDANAMTAAAAYLVGEHDFKSFCLAVSAAGKPTRREVLS 180 Query: 172 -IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ I ++ SFLH+ +R+ G+L VG G + + + L A DR Sbjct: 181 LTVERIEVLGDEVVCIDIIGSSFLHSMVRTIAGTLVAVGRGLRPPSWMAEVLAACDRTAA 240 Query: 231 GPLAPPEGLYFDSVEY 246 G AP GL F V+Y Sbjct: 241 GEKAPAAGLVFWDVDY 256 >gi|145219589|ref|YP_001130298.1| tRNA pseudouridine synthase A [Prosthecochloris vibrioformis DSM 265] gi|238685549|sp|A4SE87|TRUA_PROVI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145205753|gb|ABP36796.1| tRNA pseudouridine synthase A [Chlorobium phaeovibrioides DSM 265] Length = 243 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 105/247 (42%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ + GWQRQ NG ++QG IE + + E + + AGRTD GVHA Sbjct: 1 MPNIRLDVEYDGTSFAGWQRQPNGIVTVQGEIEAVLSEILQEKINLAAAGRTDRGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + +LN L +I I + +V FHARFSA+ R Y Y I Sbjct: 61 QVVNFSTRSPLEHSRIRHSLNCLL--PSSICIPSSQLVPDDFHARFSALERQYRYFAIPE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + AL +D M+ + L G HDF+ F + + T+ Sbjct: 119 PS--ALMGRYTGCSHGDVDFALMQHLSSGLRGTHDFSLFSREDRDGNGSLCTVREAGWYR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ + A FL + +R VG + G G+ + L A GL Sbjct: 177 HKGVMVFHIAANRFLRSMVRGIVGGMLSAGRGELDPEEYLGMLGGGGGGMRVKPAVASGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWRVRY 243 >gi|294055498|ref|YP_003549156.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] gi|293614831|gb|ADE54986.1| tRNA pseudouridine synthase A [Coraliomargarita akajimensis DSM 45221] Length = 250 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R+ I Y+G+ + GWQRQ+NG ++Q +E A+ + + HG+GRTD+GVHA Q Sbjct: 1 MRWKCICSYDGTDFEGWQRQRNGLAVQNVLEAALSQIFNLPLKTHGSGRTDAGVHARGQC 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD L +AL++ L S I ++L VD++FHAR SAI + Y+YR +A Sbjct: 61 FHFDGDWPHDTGKLIRALHSILPKSLRIERIDL--VDERFHARHSAIGKRYVYRYHLGRA 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNS 179 ++ +++ M+ AA LVG HDF+ + +P++ + D+ Sbjct: 119 HPLEQRYVWACRDTAINFGAMQEAALRLVGTHDFSAYGATHGKDSDPNPVKNVYRLDLVK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I + +L+ +RSF G+L VG + + D+E+ L+++ R AP GL Sbjct: 179 HGRQIILTTEGSGYLYRMVRSFAGALYSVGRDRLSPDDIEEILRSKIRTHRIVTAPGVGL 238 Query: 240 YFDSVEY 246 D V Y Sbjct: 239 CLDEVFY 245 >gi|331702049|ref|YP_004399008.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] gi|329129392|gb|AEB73945.1| tRNA pseudouridine synthase A [Lactobacillus buchneri NRRL B-30929] Length = 267 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 7/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIE---KAIFLVTGEIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + G++RQ +I+G + + +VV+G+GRTD+GVHAL Sbjct: 5 RYKVTLAYDGTLFSGFERQPKRRTIEGVLTQKVNIMAKNPDPPIVVYGSGRTDAGVHALG 64 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + + + LN+ L + I V FHAR+ + Y+YR+ Sbjct: 65 QVVHFDFPFDLPTKAIYRGLNSLL--PLDMEIKKAEKVSNTFHARYDVSGKRYVYRLDLG 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + ++ +D E ++ A VG HDF++F + A S +RTI + Sbjct: 123 EFKDPFKRNYTGNWRFPIDIERVQTAMNDFVGEHDFSSFVASGSTARSNVRTIYEANAIL 182 Query: 180 FGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + EIR FL+ +R VG + +G D+ + + +DR + P Sbjct: 183 DKSANEIRLEFYGNGFLYNMVRIMVGVVVEIGSQMRPEHDILRLYEVKDRDQARRTMPAS 242 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 243 GLYLKKVYY 251 >gi|194477033|ref|YP_002049212.1| tRNA pseudouridine synthase A [Paulinella chromatophora] gi|171192040|gb|ACB43002.1| tRNA pseudouridine synthase A [Paulinella chromatophora] Length = 252 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 117/248 (47%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M R + ++Y GS Y GWQRQ+N S+Q +E+A+ + + ++ AGRTD+GVHA Sbjct: 1 MKRIALCLQYEGSSYCGWQRQRNALSVQEVLEEALLALGCDKPIISFAAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN YL S V +HA +SA+ R Y Y ++ Sbjct: 61 QVVHFDTNSPIPTDSWASALNGYLPSSIRALKATS--VPNNWHACYSAVYRRYRYTLLNS 118 Query: 120 QAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + P +W ++ D MR + +G HDF+ F+ S TI + Sbjct: 119 REPDLFIAPYSWHRYDTVLDENAMRRSLLTFLGTHDFSAFQRSGSDRISTRTTIQEVSLE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I + + A FL+ +R V L VG+G+ T ++LE+ + R + AP +G Sbjct: 179 RYDEKITLEIQASGFLYGMVRLMVAQLVEVGEGRLTESNLEQRWRQHCRGQIKEAAPAQG 238 Query: 239 LYFDSVEY 246 L V Y Sbjct: 239 LCLLQVGY 246 >gi|116624080|ref|YP_826236.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] gi|122253167|sp|Q01WL4|TRUA_SOLUE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116227242|gb|ABJ85951.1| tRNA pseudouridine synthase A [Candidatus Solibacter usitatus Ellin6076] Length = 240 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 14/250 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G + GWQ Q ++IQG +E+ + + G+ V V G+GRTD+GVHAL Q Sbjct: 1 MRRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA F + L +A+N L I IL V FH RF A+ ++Y YR+ + Sbjct: 61 VAAFSIENPIPVENLRRAVNRLL--PPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRDE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA---SSPIRTIDHFDV 177 E + P LD M A+ G HDFT F + + S +RTI + Sbjct: 119 VCSPFEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSSTL 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECGPLAPP 236 + + RV FL +R+ VG+L G G L G AP Sbjct: 179 DRTPQRLVYRVRGSGFLKHMVRNIVGTLIEAGRGNIADLNSLPA--------RSGATAPA 230 Query: 237 EGLYFDSVEY 246 +GL+ SVEY Sbjct: 231 KGLFQVSVEY 240 >gi|182415339|ref|YP_001820405.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] gi|177842553|gb|ACB76805.1| tRNA pseudouridine synthase A [Opitutus terrae PB90-1] Length = 268 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 109/245 (44%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + Y+G + GWQ Q +G+S+Q +IE + + G V +HG+GRTD+GVHAL QV Sbjct: 9 PRWKCVCAYDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P L AL A L I I + V +FHARF A + Y YR+ A Sbjct: 69 FHFDAHWRHGPEKLLAALRARL--PSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGDA 126 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + AA +R + DV G Sbjct: 127 DPFTRPYSWPVFRPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRRG 186 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I A FL+ +RS VG L VG+GK T D+ L ++ R APP+GL+ Sbjct: 187 RVIRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFL 246 Query: 242 DSVEY 246 V Y Sbjct: 247 VRVFY 251 >gi|302670312|ref|YP_003830272.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] gi|302394785|gb|ADL33690.1| tRNA pseudouridine synthase A TruA2 [Butyrivibrio proteoclasticus B316] Length = 265 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEI----VVVHGAGRTDSGVH 56 Y II Y+G+ Y GW+++ + +IQG +E + + G V + GAGRTD+GVH Sbjct: 18 QNYKFIISYDGTRYHGWEKKPDLEMTIQGKLEGVLNRMIGAEGTGEVNLIGAGRTDAGVH 77 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A A L + +N YL + IS+ + + +FHAR++AI ++Y Y Sbjct: 78 ARAMTASAVLDTHLSEAEIQSYMNTYL--PEDISVNEVKVCSDRFHARYNAIGKTYRYTC 135 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ ++ + + + MR AA+ L+G HDF +F S +R +D + Sbjct: 136 WYGDGKPVFDRKYVTVLDREPNVDMMRKAAELLIGEHDFRSFCGNSKMKKSTVRVLDTIN 195 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + GN I FL +R G+L VG G + ++ L+A DRK+ GP A P Sbjct: 196 IEKNGNYIRFYFHGNGFLQNMVRILTGTLLEVGYGNISPEKIQDILKACDRKKAGPTARP 255 Query: 237 EGLYFDSVEY 246 EGL V+Y Sbjct: 256 EGLCMMKVDY 265 >gi|148556941|ref|YP_001264523.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] gi|166229840|sp|A5VDL9|TRUA_SPHWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148502131|gb|ABQ70385.1| tRNA pseudouridine synthase A [Sphingomonas wittichii RW1] Length = 254 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + +E++G + GWQRQ +G S+Q +IE+AI VTGE V+H AGRTD+ VH Sbjct: 1 MTRFRLTVEFDGRPFMGWQRQAHGPSVQQAIEEAITAVTGERAVIHAAGRTDARVHGRAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +ALNA L+ ++IL V +HARFS + R Y+YRI+ R+ Sbjct: 61 TAHADIAKPITPFRLKEALNARLR-PAPVAILACEPVAGDWHARFSCVGRRYVYRIVNRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G AW + LD + M AAQ LVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLAWQVAADLDDQAMHAAAQCLVGRHDFTTFRSAHCQAESPVKTLDRLDVRRS 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G LIEI ARSFLH Q+RS VG L LVG G+WT+ DL AL A DR G APP+GLY Sbjct: 180 GELIEIEAAARSFLHHQVRSMVGCLALVGRGRWTAADLADALAAADRARLGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FMEAVY 245 >gi|331092366|ref|ZP_08341192.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330401390|gb|EGG80976.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 4/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MII Y+G+ Y GWQRQ +IQG IEK I V G V + G+GRTD GVHA QVA+ Sbjct: 1 MIIAYDGTKYQGWQRQSGTPMTIQGIIEKTIGEVVGYPVEIDGSGRTDGGVHAGGQVANV 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L + + + LN L + I I ++ +V +FH+R A+ ++Y Y + R+ Sbjct: 61 RLSGKVEEAVFQEKLNEKL--PEDIRICHVELVLNRFHSRLDAVAKTYEYVVDMREKADV 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + + K L+ E MR AA L+G+HDF+ F + S +R + + ++ + Sbjct: 119 FTRKYCYHYTKPLEPEKMRKAAALLIGKHDFSAFTDKKDE-KSAVRELYDIQIETYRQKL 177 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R F++ Q+R FVG+L G G+ + + +AL+++ R G LAP L V Sbjct: 178 YFRFYGNGFMYHQVRIFVGTLLEAGAGERSVESVLEALKSKKRVNAGFLAPAHALTLKEV 237 Query: 245 EY 246 EY Sbjct: 238 EY 239 >gi|121611771|ref|YP_999578.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] gi|166229848|sp|A1WSF3|TRUA_VEREI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121556411|gb|ABM60560.1| tRNA pseudouridine synthase A [Verminephrobacter eiseniae EF01-2] Length = 272 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 126/258 (48%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I YNG Y GWQ Q + ++Q ++E A+ V AGRTD+GVH L QV Sbjct: 1 MRMALGISYNGQAYCGWQSQPSVRTVQDALEAALGRFATHPVSTLCAGRTDAGVHGLMQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + + N +L I++ V FHAR SA+ R Y Y ++ Sbjct: 61 VHFDTPLDRPAASWVRGTNGFL--PADIAVQWAQAVPDSFHARASALARRYAYVLLQSPV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT---------- 171 ++E GR + LD + M+ AA +LVG HDF+ FR+ CQA SP++T Sbjct: 119 RPSVESGRVGWVCHRLDHDAMQQAADYLVGEHDFSAFRASTCQAPSPVKTLRRIGISCRG 178 Query: 172 --IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 H + VA +FLH IR+ +G L +G GK + +++ L+A+ R Sbjct: 179 QSPPHPALGWSPCYWRFEFVANAFLHHMIRNIMGCLVAIGQGKQSPQWMQQLLRARSRAA 238 Query: 230 CGPLAPPEGLYFDSVEYS 247 P P+GLYF Y+ Sbjct: 239 AAPTFAPDGLYFLGPVYA 256 >gi|320107224|ref|YP_004182814.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925745|gb|ADV82820.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Terriglobus saanensis SP1PR4] Length = 287 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 116/259 (44%), Gaps = 16/259 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+G+ + GWQ Q +IQGS+ AI VT E V+ G+GRTD+GVHAL QV Sbjct: 17 WRLKLAYDGTDFAGWQVQPGLPTIQGSLASAIRSVTSEEVLPQGSGRTDAGVHALGQVVS 76 Query: 64 FDLVREWVPVILCKALNAYLKISD------TISILNLSIVDKQFHARFSAIRRSYLYRII 117 L P L +ALN L S ++ + + + + Sbjct: 77 LKLAVPIPPDNLKRALNRILPTSIRVLEAGIVAPEFHARRGVLSKTYRYTLFLCRPTKDV 136 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS----------S 167 W P LD M AA+ VG HDFT+F + + Sbjct: 137 EEIVCSPERARWVWQYPAPLDVAAMMQAAERFVGTHDFTSFAANDPERKTRLEAESNAPD 196 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IRT+ G+ + +V FLH +R+ VG+ VG G+ +T++EK L A++R Sbjct: 197 NIRTLYSSAWTLCGDELSYQVRGSGFLHHMVRNLVGTCVDVGAGRILATEMEKILVAKNR 256 Query: 228 KECGPLAPPEGLYFDSVEY 246 GP APP+GL VEY Sbjct: 257 GAAGPTAPPQGLSLLEVEY 275 >gi|221632949|ref|YP_002522172.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] gi|221155520|gb|ACM04647.1| tRNA pseudouridine synthase A [Thermomicrobium roseum DSM 5159] Length = 279 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 83/259 (32%), Positives = 119/259 (45%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + Y G+ + G QRQ ++QG +E+A+ + GE V V AGRTD+GVHA+ QV Sbjct: 4 QRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A FDL L +AL A+L + + + ++ + FHAR A+ R Y YRI + Sbjct: 64 ASFDLCWRHDEATLARALQAWL--PEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQ 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P + W LD M+ AAQ +G HDF +F + Sbjct: 122 PPLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEW 181 Query: 182 NL--------------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 +L +E RV A FL +R+ V +L VG G + + + L+ DR Sbjct: 182 HLLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDR 241 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P APP GL V Y Sbjct: 242 RAAPPPAPPGGLVLWRVRY 260 >gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM 40736] Length = 284 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 112/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSKETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL RE K L + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHQKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRNHVLWHDWPLDVDAMNEAARRLLGEHDFAAYCKKREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V +I V A +F H +RS +G+L VGDG K L A R + P Sbjct: 190 VKGEDGIITATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|327398248|ref|YP_004339117.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] gi|327180877|gb|AEA33058.1| tRNA pseudouridine synthase A [Hippea maritima DSM 10411] Length = 241 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 4/245 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RYC I Y+G+ Y G+Q Q + ++QG IEKA+ + + ++ AGRTD+GVHA QV Sbjct: 1 MRYCACIAYDGTNYSGFQIQPDVKTVQGEIEKALKRIFKTDLRINFAGRTDAGVHAFEQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F ++ + L KALN+ L + I I ++ IVD FH+R+SA R Y+Y + Sbjct: 61 IDFPVIADIETYSLKKALNSVL--PEDIRIKSVKIVDNSFHSRYSAKFREYVYFAFDGEY 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 W + LD + MR+A++ VG DF+ + + + R + + + Sbjct: 119 LPPFLCRYVWHVKFKLDVDAMRLASRLFVGYKDFSFVAN-EPEGKNCTREVYFLRIKRYR 177 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + A FL +R+ VG L + ++ AP GL+ Sbjct: 178 EFVVFHIRAGGFLRGMVRNIVGLLVGYSANALQIDKSGNIIFSRG-NLKSFKAPACGLFL 236 Query: 242 DSVEY 246 V Y Sbjct: 237 RRVAY 241 >gi|313887179|ref|ZP_07820875.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] gi|312923408|gb|EFR34221.1| tRNA pseudouridine synthase A [Porphyromonas asaccharolytica PR426713P-I] Length = 262 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 10/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQSRGVSVQSELERALSILFRQPISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P + + L L+ IS+ +++ V HARF A R Y Y I Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILRGG--ISVRSVTPVIPTAHARFDATSRRYHYYISACS 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + W D M A +H +G HDFT+F +H Q T+ Sbjct: 124 NPFWGD--YCWERRTLPDMALMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q++DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQSEDRSLAGSAAP 241 Query: 236 PEGLYFDSVEY 246 L+F Y Sbjct: 242 ARALFFVEATY 252 >gi|116331308|ref|YP_801026.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124997|gb|ABJ76268.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 265 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKAI ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAIKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + V L+ +SIL ++ V + F +RFS R Y Y I+ + Sbjct: 61 VNFKT-IKTVQNFNKFLLSMNAITDSGLSILGMTEVGENFDSRFSCNSREYEYLILNTKY 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDH---FDV 177 P + K RA+ +D ++ + L + ++ + S IRTI Sbjct: 120 PRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDAKLERS 179 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + L++I++ A FLH IR G+L + +GK ++ L ++DR G PP Sbjct: 180 SEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGITLPPY 239 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 240 GLYFLRAYY 248 >gi|227505250|ref|ZP_03935299.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] gi|227198149|gb|EEI78197.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940] Length = 285 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 122/261 (46%), Gaps = 16/261 (6%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + + Y+G+ + GW RQK + ++QG +E + ++ V + AGRTD+GVH+ Sbjct: 1 MTNVRLRLDLAYDGTDFHGWARQKGDLRTVQGVLEDNLSMILRHDVELTVAGRTDAGVHS 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ E + A L + + + + + F ARFSA++R Sbjct: 61 AGQVAHFDVPSEALDQRSIDGDPAKLVRRLAKLLPEDVRVHACTAAPEGFDARFSALQRH 120 Query: 112 YLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y+YRI T + R PK +D + M+ AA LVG HDF F A++ R Sbjct: 121 YVYRITTHPRGALPTRARDTAQWPKPVDIDAMQEAATTLVGLHDFAAFCKAKPHATTI-R 179 Query: 171 TIDHFDV-----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + F+ + L E RV A +F + +RS VG VG+G L Sbjct: 180 DLHSFEWVDVSTPTEPQLYEARVCADAFCWSMVRSLVGCCLRVGEGARDVDFATAMLAES 239 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R PLAP +GL V+Y Sbjct: 240 QRSSQIPLAPAKGLSLVRVDY 260 >gi|289547965|ref|YP_003472953.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] gi|289181582|gb|ADC88826.1| tRNA pseudouridine synthase A [Thermocrinis albus DSM 14484] Length = 241 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y +I+ + G+ + GWQ Q + ++QG + + + + G RTD+GVHA Sbjct: 1 MFNYGLILSFVGTHFHGWQIQPSLRTVQGELSSCLSKIFDRTIKPIGCCRTDAGVHAKEY 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A+F P L KALN+ L + + L+ ++R+S ++Y+YRI Sbjct: 61 AANFKAPTFIEPDKLLKALNSLLPHDIGVKKVWLAEEKW--NSRYSIKGKTYVYRIHMSH 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + W IP +L + MR +Q LVG HDF+ F S +PI ++ + Sbjct: 119 ARDPFLEPFVWRIPYTLQVDKMREISQLLVGTHDFSGF-SKKEDDKNPIIDLEELVLLQE 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+++ + AR FL +R VG+L VG K ++E+ L ++ C AP +GL Sbjct: 178 GDILILSFRARRFLRYMVRRMVGALVQVGLEKIGKEEIERYLSGEN---CPYTAPAKGLT 234 Query: 241 FDSVEYS 247 + + +S Sbjct: 235 LEKIHFS 241 >gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] gi|133775591|gb|EBA39411.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC 25986] Length = 274 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 113/249 (45%), Gaps = 10/249 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF- 64 + Y+GS Y G+ Q +++ G + +AI + + + AGRTD+GVHA+ Q Sbjct: 19 FRVAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTCAGRTDAGVHAVAQYISVP 78 Query: 65 --DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D +A++A L I+I + K F ARF A R+Y YRI R A Sbjct: 79 VTDAELALTRRRWLRAMDALL--PKDIAINEVYRARKGFSARFDARSRTYTYRIADRDAR 136 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDV 177 L +G W LD E M A L+G DF +F + +R +V Sbjct: 137 PVLSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVGKPTHRCVMRAEFGHEV 196 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +++ + +FLH+ +R+ VG+L +G + + + + A DR GP AP Sbjct: 197 AFGEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAAGPTAPAC 256 Query: 238 GLYFDSVEY 246 GL F V+Y Sbjct: 257 GLTFMGVDY 265 >gi|228470580|ref|ZP_04055437.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] gi|228307707|gb|EEK16683.1| tRNA pseudouridine synthase A [Porphyromonas uenonis 60-3] Length = 262 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 108/251 (43%), Gaps = 10/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ Y GWQ Q G S+Q +E+A+ ++ + + V GAGRTD+GVHA + Sbjct: 6 QRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHAYSMM 65 Query: 62 AHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH DL P + + L L+ ++ + I ++ Y Sbjct: 66 AHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATS----RRYHYYISA 121 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 W D E M A +H +G HDFT+F +H Q T+ Sbjct: 122 CSNPFWGDYCWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 181 -----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + V A FLH +R+ VG+L VG G+ T + + +Q +DR G AP Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAAP 241 Query: 236 PEGLYFDSVEY 246 L+F Y Sbjct: 242 ARALFFVEATY 252 >gi|257452870|ref|ZP_05618169.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059412|ref|ZP_07923897.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685088|gb|EFS21923.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 251 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 110/252 (43%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSG 54 + IEY G+ Y GWQR Q+ +IQG IE+ + + E V V +GRTD+G Sbjct: 4 VNLRFSIEYEGTRYLGWQRLGEKQRE-KTIQGKIEQVLARLFALNPEEVSVIASGRTDAG 62 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+A+ L P + + N YL I + Y Sbjct: 63 VHAKEQIANVHLPSGKSPQEIEEYCNQYLPEDIRIFHAHFVEELFHSRFHAKTKEYHYEI 122 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + LD E M+ ++Q+ +G HDF F S+ S IR ID Sbjct: 123 SLQKPSVFHRNVTWYCPMQ---LDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDR 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ + + R V FL IR VG+L VG+GK T D+ Q++ R++ G LA Sbjct: 180 IEIQETESGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLA 239 Query: 235 PPEGLYFDSVEY 246 P +GL V Y Sbjct: 240 PAKGLTLYKVYY 251 >gi|78187037|ref|YP_375080.1| tRNA pseudouridine synthase A [Chlorobium luteolum DSM 273] gi|123730052|sp|Q3B3P4|TRUA_PELLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78166939|gb|ABB24037.1| tRNA pseudouridine synthase [Chlorobium luteolum DSM 273] Length = 253 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 108/247 (43%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ Y GWQRQ G ++QG +E + + E V + AGRTD GVHAL Sbjct: 1 MRNIRLRVEYDGTPYAGWQRQPGGIVTVQGELEACLSRILQERVNLAAAGRTDRGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + +LN L DTI + VD +FHARFSA R Y Y ++ Sbjct: 61 QVVNFQTASSLELQRIAHSLNCLL--PDTIRVDCPQEVDMEFHARFSAAERQYRYFLMEE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A + LD M A L G HDF+ F + + ++ Sbjct: 119 PSAVF--GRFAGCSSRPLDLPLMHSLAVTLKGIHDFSAFSREDRDGTGSLCSVRMAGWYR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL + +R VG++ +G G+ + L A A GL Sbjct: 177 HRGFLVFHIAANRFLRSMVRGLVGAMMDIGAGRLDPCSFKAMLDADAHARRVRPAAASGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLSRVVY 243 >gi|300779794|ref|ZP_07089650.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] gi|300533904|gb|EFK54963.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC 33030] Length = 303 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 20/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 +R + I Y+G+ + GW RQ ++QG +E A+ L+ V + AGRTD+G Sbjct: 18 VRLRLDIAYDGTRFHGWARQAAAPGEETPVRTVQGELEDALSLILRHPVELTVAGRTDAG 77 Query: 55 VHALRQVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 VHA QVAH D+ + P L + L L+ ++ + + D Sbjct: 78 VHATGQVAHADVPKHALDQRSIVGEPEKLTRRLARLLEPDLRVTAVTEAPRDFDARFSAL 137 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y P L + K +D ++ A LVG +D+ F A+ Sbjct: 138 TRTYRYR-VTTNTAGPNPLRRTDTAAWTKKIDLHAVQETATALVGLNDYAAFCKPRPHAT 196 Query: 167 SPIRTIDHFD----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + L E + A +F +R+ V + VG G + + L Sbjct: 197 TIRDIHSFTWADVSTPEEPELYEATITADAFCWHMVRALVATCLDVGSGARDVSWAKTLL 256 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 A +R LAP GL V+Y Sbjct: 257 AAHERDPLVKLAPANGLTLIRVDY 280 >gi|254383143|ref|ZP_04998497.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] gi|194342042|gb|EDX23008.1| tRNA pseudouridine synthase A [Streptomyces sp. Mg1] Length = 283 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 112/249 (44%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ V + V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRVLRTVQGELESALTTVMRLPDPVELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVA FD+ E K L + + ++ + F+ARFSAI R Y YR+ Sbjct: 70 QVAQFDVAEEVWAEHHDKLLRRLAGRLPHDVRVWKVAEAPQGFNARFSAIWRRYAYRVGD 129 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 Q L +G LD + M AA L+G HDF + A++ Sbjct: 130 HQGGVDPLRRGHVLWHQWPLDVDAMNRAAAALLGEHDFAAYCKKREGATTIRTLQQLSWE 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + ++ V A +F H +RS VG+L VGDG + L A R + P Sbjct: 190 RAGDGIVTATVRADAFCHNMVRSLVGALLHVGDGHRPVEWPGQVLAAGVRDSSVHVVKPH 249 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 250 GLTLEEVGY 258 >gi|162446996|ref|YP_001620128.1| tRNA pseudouridine synthase A [Acholeplasma laidlawii PG-8A] gi|161985103|gb|ABX80752.1| pseudouridylate synthase [Acholeplasma laidlawii PG-8A] Length = 240 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 107/245 (43%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY I Y+G+ Y G+Q+Q N IQ IEKA L+T + A RTD GVHAL QV Sbjct: 1 MRYKAIFSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD E ALN L I ++ ++ V FHAR SA + Y+Y+I + + Sbjct: 61 LHFDSDIELTSDQWVDALNKRL--PTDIRLMKVTPVKDNFHARHSAKSKRYIYKIAKQPS 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + ++ +D + S + + PI+TI FD Sbjct: 119 TVFRGNHELYVKHFDIDLVKDHLHTIVGTHDFS---GFSPNKEHKPPIKTIYSFDYKETK 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + SFL +R +G++ V K LE L+ ++R+ A +GLY Sbjct: 176 THYIFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 KHIYY 240 >gi|189346490|ref|YP_001943019.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] gi|238692218|sp|B3EIU9|TRUA_CHLL2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189340637|gb|ACD90040.1| tRNA pseudouridine synthase A [Chlorobium limicola DSM 245] Length = 243 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 108/247 (43%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M +EY+G+ + GWQRQ G ++QG +E + + E + + AGRTD GVHA Sbjct: 1 MKNIRFDVEYDGTDFCGWQRQPGGIQTLQGELEAQLGRILQENISLTAAGRTDKGVHARL 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + ALN+ L DT+ + N +V FHARFSA + YR Sbjct: 61 QVVNFMTGSAMELSKMAHALNSLL--PDTVRVSNPHVVPLDFHARFSA--KEREYRYFLL 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL SL M+ AA LVG HDF +P+ I + Sbjct: 117 EEPSALRCRFTGCSKGSLHIGVMQDAAGLLVGEHDFLLLSKEPADKKNPVCLIKECEWQE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A FL + +R VG + VG G+ DL L A P GL Sbjct: 177 ENGVFVFRIRANRFLRSMVRYLVGVMIAVGRGRAVPEDLGMLLDDGLMTFPLFPAEPNGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWDVSY 243 >gi|315605929|ref|ZP_07880960.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312211|gb|EFU60297.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 180 str. F0310] Length = 299 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 84/276 (30%), Positives = 122/276 (44%), Gaps = 32/276 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q ++QG IE A+ + + E V AGRTD+GVHA Q Sbjct: 1 MRRLRLDLGYDGTDFRGWAAQPGLRTVQGEIEAALAMASREEVTTTVAGRTDAGVHARHQ 60 Query: 61 VAHFDLVREWVPV--------------ILCKALNAYL----------------KISDTIS 90 V H DL E + + LN L + + + Sbjct: 61 VCHVDLSDEAWARLAPRGERSEDDAATSIVRRLNKILSGRYGERSRTRGMGVARGTCDVR 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I +VD F ARFSA+ R Y YR+ AP L + + + LD + M AA L+ Sbjct: 121 IFAARVVDASFDARFSALARRYTYRVSD--APDPLARWDRLWVDEPLDDQAMNDAAAPLL 178 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G+HDF + A++ V + RV A +F H+ +RS VG+L LVG Sbjct: 179 GQHDFLGYCRPREGATTIRALRTLRAVREADGTLAFRVEADAFCHSMVRSLVGALLLVGS 238 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G + L A+ R P+AP GL + V+Y Sbjct: 239 GARNIDYPARVLGARSRASAAPIAPAHGLTLEGVDY 274 >gi|320160443|ref|YP_004173667.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] gi|319994296|dbj|BAJ63067.1| tRNA pseudouridine synthase A [Anaerolinea thermophila UNI-1] Length = 259 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 4/248 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I+ Y+G+ + G+QRQ ++Q +EKA+ + + +GRTD+GVHA Q Sbjct: 1 MARYKVILAYDGTHFQGFQRQAGARTVQAEVEKALRSLGWGEESLLSSGRTDTGVHASGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V FDL L ALNA L + ++ + V FH RF+AI R+YLYRII + Sbjct: 61 VIAFDLDWRHSLEALRNALNARL--PEDVAAKQVEEVPGDFHPRFNAIERAYLYRIIVAE 118 Query: 121 APLALEKGRAWLIPKSLD-CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + AW + L+ E ++ AAQ L G HDF+ F + + S +R I + Sbjct: 119 TRDPLRERYAWRLWPPLEAPEALQSAAQALCGTHDFSAFGTPPVEGGSTLRHIYQAEWRE 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ V +FL+ +R V + VG + + D +A+Q Q R LAP GL Sbjct: 179 NGDEWLFEVRGNAFLYHMVRRMVWAQVQVGLNRLSLADFLEAVQ-QARPLPPGLAPAHGL 237 Query: 240 YFDSVEYS 247 V Y+ Sbjct: 238 VLTGVRYA 245 >gi|194336595|ref|YP_002018389.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] gi|259550418|sp|B4SA76|TRUA_PELPB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|194309072|gb|ACF43772.1| tRNA pseudouridine synthase A [Pelodictyon phaeoclathratiforme BU-1] Length = 243 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + +EY+G+ + GWQRQ ++QG IE A+ + E + + AGRTD GVHA Sbjct: 1 MKNIRVTVEYDGTSFAGWQRQSGAIVTVQGEIEVALGKILQEKISLAAAGRTDKGVHARA 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q A+F P + +LN+ L TI I N VD FHAR SA R Y Y +I Sbjct: 61 QTANFFTASSLEPSRIVHSLNSLL--PQTIRISNPEEVDADFHARHSAKERQYRYFLIEE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + A LD M+ A LVG HDF+ F I ++ Sbjct: 119 PSA--IYGRFAGCSFGKLDVAIMQQMAAILVGTHDFSAFSKEDRDNPGRICSVTACKWYP 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + +R+ A FL + +R V ++ G G+ + D + L+ A P GL Sbjct: 177 CKHYLVLRISADRFLRSMVRYLVDAMIRAGKGRLSVGDFCRMLETGVTTSQLNPALPAGL 236 Query: 240 YFDSVEY 246 + V Y Sbjct: 237 FLWDVLY 243 >gi|212704912|ref|ZP_03313040.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] gi|212671683|gb|EEB32166.1| hypothetical protein DESPIG_02979 [Desulfovibrio piger ATCC 29098] Length = 264 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 119/258 (46%), Gaps = 16/258 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y+GS Y GWQ Q ++Q ++E A+ + G V V G+GRTD+GVHA Sbjct: 8 MRLRLLLAYDGSRYCGWQIQDIPTPPPTVQAAVEAAVGRIAGRPVRVFGSGRTDAGVHAH 67 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ R ALNA L + +L FHAR SA+R++Y+Y Sbjct: 68 GQVAHCDVPRRPGLD-WRHALNALL--PADVRVLYWQEAAPDFHARISALRKTYVYDFWQ 124 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT------- 171 + + LD E MR A L+GRHDF +F++ + S +R Sbjct: 125 EKGFVPPRLAPFVWRSGPLDAEAMRAALPFLLGRHDFASFQNAGTEMESTVRELQAATLT 184 Query: 172 --IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + + V A FL +R+ G L G K + L+A DR+ Sbjct: 185 ELPPVEFMPPCLPCLRLTVTANGFLKQMVRNMAGLLAAYGRHKLRPDQIPAILEAADRRA 244 Query: 230 CG-PLAPPEGLYFDSVEY 246 P APP+GL VEY Sbjct: 245 LPSPTAPPQGLALAHVEY 262 >gi|229829433|ref|ZP_04455502.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] gi|229791864|gb|EEP27978.1| hypothetical protein GCWU000342_01523 [Shuttleworthia satelles DSM 14600] Length = 325 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 81/300 (27%), Positives = 120/300 (40%), Gaps = 56/300 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------------EIVVVHGA 48 M Y + I Y+G+ Y GW+ Q +IQG +E+A+ + G V + GA Sbjct: 27 MQNYRLKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGA 86 Query: 49 GRTDSGVHALRQVAHF------------------------------------------DL 66 GRTD+GVHA VA + Sbjct: 87 GRTDAGVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQ 146 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 R + LN YL D IS++ +FHAR+ A+ ++Y Y + Sbjct: 147 PRSMTCQEMQDYLNHYL--PDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFN 204 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + + LD M+ AA L+G HDF +F S +R +D ++ + Sbjct: 205 RRYYTPLEEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYF 264 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 FL +R VG+L VG + D+EK L+A+DRK GP AP GL V+Y Sbjct: 265 SFHGTGFLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDY 324 >gi|315656237|ref|ZP_07909128.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493239|gb|EFU82839.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 297 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 123/271 (45%), Gaps = 26/271 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--------- 100 AHF D + + +L L+ L S Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 101 ----FHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNYCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 F A++ + + ++EIRV A +F H+ +RS VG+L VG K + Sbjct: 181 AAFCKPREGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRDT 240 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L AL A+ R P+AP GL V+Y Sbjct: 241 AWLADALAAKARIPEIPVAPALGLTLTQVDY 271 >gi|329114449|ref|ZP_08243211.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] gi|326696525|gb|EGE48204.1| tRNA pseudouridine synthase A [Acetobacter pomorum DM001] Length = 262 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 111/248 (44%), Positives = 154/248 (62%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R+ + +EY+G+G GWQRQK+G S+Q +E A + G V AGRTDSGVHAL Q Sbjct: 10 QRWAVKLEYDGTGLVGWQRQKSGLSVQSLLEAAAARLAGNRPVSSITAGRTDSGVHALAQ 69 Query: 61 VAHFDLVREWVPVIL--CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VAH D + + L+ +LK + + + + + D + ARFSA RSY YRI+ Sbjct: 70 VAHLDFPADVRFSRHSVREGLSYHLKPHNVVVLDAVQV-DTDWSARFSATWRSYQYRILN 128 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R++ L G W + +LD E M+ AA LVG HDFT+FR++ CQA SP+RT+D DV+ Sbjct: 129 RRSRPTLLAGNVWHVKSTLDVEKMQEAANILVGPHDFTSFRAVACQAHSPMRTLDQLDVS 188 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + ARSFLH Q+R+ VG+LKLVG G W + +AL+A++R GP APPEG Sbjct: 189 RHGDEVLVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEG 248 Query: 239 LYFDSVEY 246 LY + V Y Sbjct: 249 LYLNGVGY 256 >gi|257463955|ref|ZP_05628340.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|317061478|ref|ZP_07925963.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] gi|313687154|gb|EFS23989.1| tRNA pseudouridine synthase A [Fusobacterium sp. D12] Length = 242 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ N ++QG IEK++F + E + + +GRTD GVHA++Q Sbjct: 1 MRNIKISYQYDGSSFMGFQRQPNQRTVQGEIEKSLFHILREKIDLTSSGRTDRGVHAIQQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + I +L + VD +FHARFSA RSY Y I Sbjct: 61 VSNFFTAVNIPSDRLFYALSRNL--PEDILLLQVEEVDSEFHARFSAKTRSYRYCI--TW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E + + ++ Q +GRH+F FR ++P+R I V Sbjct: 117 KKNPFEHRYKAYVKEKIESTEFLKILQVFIGRHNFQNFRLQDSSFANPMREIYSISVEEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I +VA +FL +QIR +G+ V GK + + L+ + + LA GLY Sbjct: 177 ENGMNIDIVANAFLKSQIRIMIGTALQVYFGKVEGDRITRMLEELETEFPKYLADSSGLY 236 Query: 241 FDSVEY 246 +EY Sbjct: 237 LYRIEY 242 >gi|119484807|ref|ZP_01619289.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] gi|119457625|gb|EAW38749.1| tRNA pseudouridine synthase A [Lyngbya sp. PCC 8106] Length = 279 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 110/246 (44%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G+ + GWQRQ NG ++Q IE AI V V +HGAGRTD+GVHA QV Sbjct: 4 KRIALVIQYQGTRFNGWQRQPNGRTVQEEIETAIANVVDSPVTLHGAGRTDTGVHAAAQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AHF++ LN L I + + VD +HARFSA+ R Y Y + T Sbjct: 64 AHFEVTGPIPGYRWATILNHRL--PHDILVRASAQVDPSWHARFSAVWRRYRYLLYTDSR 121 Query: 122 PLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P LD + M+ A L+GRH + F+ + + Sbjct: 122 PNLFVRPWSWHYYHAPLDEKLMQAALIPLLGRHHLSAFQRAGTRRPHAWVDVQDVSCQRQ 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I+I V A FL+ +R +G L VG + + + R+ AP GL Sbjct: 182 GPFIQIEVQASGFLYGMMRLLLGLLVEVGAQARSLENFTDIWVHERRELVKYSAPARGLC 241 Query: 241 FDSVEY 246 V Y Sbjct: 242 LLRVGY 247 >gi|257466765|ref|ZP_05631076.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315917914|ref|ZP_07914154.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313691789|gb|EFS28624.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 251 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 109/252 (43%), Gaps = 11/252 (4%) Query: 2 IRYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSG 54 + IEY G+ Y GWQR Q+ +IQG IE+ + + E V V +GRTD+G Sbjct: 4 VNLRFSIEYEGTRYLGWQRLGEKQRE-KTIQGKIEQVLARLFALNPEEVSVIASGRTDAG 62 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA Q+A+ L P + + N YL I + Y Sbjct: 63 VHAKEQIANVHLPSGKSPQEIEEYCNQYLPEDIRIFHAHFVEELFHSRFHAKTKEYHYEI 122 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + LD E M+ ++Q+ +G HDF F S+ S IR ID Sbjct: 123 SLQKPSVFHRNVTWYCPIQ---LDIEKMKESSQYFLGEHDFLAFSSLKKTKKSTIRRIDR 179 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 ++ + R V FL IR VG+L VG+GK T D+ Q++ R++ G LA Sbjct: 180 IEIQETEFGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKARQKAGFLA 239 Query: 235 PPEGLYFDSVEY 246 P +GL V Y Sbjct: 240 PAKGLTLYKVYY 251 >gi|315655839|ref|ZP_07908737.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] gi|315489903|gb|EFU79530.1| tRNA pseudouridine synthase A [Mobiluncus curtisii ATCC 51333] Length = 314 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 82/271 (30%), Positives = 124/271 (45%), Gaps = 26/271 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 18 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALAVIYRQTVELTVAGRTDAGVHASGQV 77 Query: 62 AHFDLVREWVPVILCKALNAYL-------------------------KISDTISILNLSI 96 AHF + ++ L L D + + + Sbjct: 78 AHFTVPEVGDRIVPPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAVDALVVTTAMV 137 Query: 97 VDKQFHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V + F ARFSA+ R Y+YRI+ L + W P LD M +A L+G HDF Sbjct: 138 VPETFDARFSALARHYVYRIVDDLAVRNPLCRNYCWWYPTPLDAAAMNASAAVLLGEHDF 197 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 F A++ + + ++EIRV A +F H+ +RS VG+L VG K + Sbjct: 198 AAFCKPREGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRDT 257 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L AL A+ R P+AP GL V+Y Sbjct: 258 VWLADALAAKARIPEIPVAPALGLTLTQVDY 288 >gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14] Length = 284 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 112/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSAFHGWAKQAGGKRTVQGEIEDALRTVTRSQETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL + K L + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPEQVWREHHEKLLKRLAGRLPRDVRVWALRPAPSGFNARFSAVWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARRLLGEHDFAAYCKKREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +I V A +F H +RS +G+L VGDG T K L A R + P Sbjct: 190 RRGADGIITATVRADAFCHNMVRSLIGALLFVGDGHRTPDWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] gi|229557997|sp|B2A4Q5|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 253 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 10/254 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M + I Y+GS Y G+Q Q+N ++Q +EKA+ V + + A RTDSGVHA Sbjct: 1 MDNIKLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F ++ + ALN L + I+I+N +V F AR AI++ Y Y + Sbjct: 61 QVANFFAPKQIPIHKIPLALNTNL--PNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHA 118 Query: 120 QAPLALEKGRA-WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH------CQASSPIRTI 172 + A ++LD ++ AA +G+HDF+ FR+I Sbjct: 119 PYMDPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFD 178 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + GNLI +V+ +FL+ +R VG+L +G+GK ++KALQ DR GP Sbjct: 179 IDVNAGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGP 238 Query: 233 LAPPEGLYFDSVEY 246 A P+GL + Y Sbjct: 239 TASPQGLVLQQIWY 252 >gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712] Length = 285 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 114/250 (45%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW +Q + ++QG IE A+ VT E + AGRTDSGVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQAQGQRTVQGDIEDALRTVTRSKETYELTVAGRTDSGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL E K L S + + +L+ F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPAELWAEHRDKLLRRLAGRLSHDVRVWSLAEAPSGFNARFSAIWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G +LD + M AA LVG HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWALDMDAMNEAAAALVGEHDFAAYCKRREGATTIRTLQELRW 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++E V A +F H +RS VG+L VGDG K L A R + P Sbjct: 190 ERRPDGVLEATVKADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|119718091|ref|YP_925056.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] gi|119538752|gb|ABL83369.1| tRNA pseudouridine synthase A [Nocardioides sp. JS614] Length = 268 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 111/249 (44%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q ++QG + A+ V V V AGRTD+GVHA Q Sbjct: 1 MRIRLDLAYDGTDFHGWASQPGLRTVQGELSDALATVLRVPEVAVVCAGRTDAGVHARGQ 60 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-I 117 V H DL L + LN L + + F ARF A+ R Y YRI Sbjct: 61 VVHADLDGLEPATVEGLVRRLNGRL--PADVRVRRAVEAPAGFDARFGALWRRYAYRIAD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T L + P++LD + M A+ LVGRHDF +F A++ ++ Sbjct: 119 TPAVVDPLTRSHVLAWPRALDLDAMNAASAFLVGRHDFASFCKQREGATTIRTLLELSWA 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ V A +F H+ +RS VG L VG+ + E L+A+ R + Sbjct: 179 RDPAGVLVGTVRADAFCHSMVRSLVGCLIAVGEARKPVAWAEDILRAEARDPAVAVVHAH 238 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 239 GLTLEEVAY 247 >gi|72382942|ref|YP_292297.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL2A] gi|72002792|gb|AAZ58594.1| tRNA pseudouridine synthase [Prochlorococcus marinus str. NATL2A] Length = 276 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 117/249 (46%), Gaps = 5/249 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M R ++I+Y+GSG+ GWQ QK+ ++QG++E+ I + V AGRTDSGVHA Sbjct: 1 MTNRIALVIQYDGSGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L +I +L V K +HA +SA R Y Y I Sbjct: 61 GQVVHFDCSGPIPIHKWASALNGRL--PASIKVLEAVGVPKVWHACYSAKYRRYRYSIFN 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L L+ LD M+ A L+G HDF F+ S+ + T+ + Sbjct: 119 GSYPNLFLQNISWHKYRFMLDINLMKHALNDLLGLHDFAAFQKAGSNRSNSLTTVQDVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 179 SRYGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAPAH 238 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 239 GLCLIRVGY 247 >gi|257453277|ref|ZP_05618576.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|317059811|ref|ZP_07924296.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] gi|313685487|gb|EFS22322.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_5R] Length = 245 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ Q Sbjct: 1 MKNIKISYQYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + L + D ++ Y Sbjct: 61 VSNFFTAVNIPLDKLFYALSRCLPEDILLLELEEARKDFHARF----SAKTRSYCYRITW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + K +D ++ + +G+H+F FR ++PIR I V Sbjct: 117 EKSPFERRYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY Sbjct: 177 DEGMDIYIEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLY 236 Query: 241 FDSVEY 246 ++Y Sbjct: 237 LYHIKY 242 >gi|227502701|ref|ZP_03932750.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] gi|227076431|gb|EEI14394.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725] Length = 293 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRIRLDLAYDGTDFHGWARQKGGLRTVQGVLEEQLAMIARTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREWVPVILC--------KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E + + L L + + + Y Sbjct: 77 VAHVDVPQEMLEQRSVANDPGKLVRRLAKLLPEDVRVHGCDFAPEGFDARFSALRRHYVY 136 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 R A + A A + ++ + Sbjct: 137 RITTSPRGALPTRARDTAEWFKPVDIGAMQDAANALVGLHDFAAFCKAKPNATTIRELQE 196 Query: 173 DHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L E RV A +F + +RS VG VG+G+ LQ R Sbjct: 197 FSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQETKRSS 256 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 257 RIPVAPAKGLSLVQVDY 273 >gi|294814496|ref|ZP_06773139.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] gi|326442885|ref|ZP_08217619.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|294327095|gb|EFG08738.1| Pseudouridylate synthase [Streptomyces clavuligerus ATCC 27064] Length = 288 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 106/250 (42%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW RQ G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L + I F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPAEVWAEHREKLLKRLAGRLDRDVRIWRAEEAPAGFNARFSAVWRRYAYRVS 129 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+Q L+G HDF + A++ Sbjct: 130 DHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAYCKKREGATTIRTLQRLSW 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +I V A +F H +RS VG+L VGDG K L A R + P Sbjct: 190 ERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|153853827|ref|ZP_01995183.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] gi|149753577|gb|EDM63508.1| hypothetical protein DORLON_01174 [Dorea longicatena DSM 13814] Length = 244 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 127/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V + G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGSRYQGWQRQATTDNTIQYILEWSIGKLVGYRVHIDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + + FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELAKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++L+G +FT+F PIR I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDATKYLIGPKNFTSFTDDKEC-KDPIRKITNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 SGEKVRITYYGTGFLYHMVRILTGTLLEIGAGKRDASMLPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|256785794|ref|ZP_05524225.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 275 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 113/250 (45%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 1 MRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL RE K L + + L F+ARFSA+ R Y YR+ Sbjct: 61 GQVAHVDLPREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 120 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 121 DNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKKREGATTIRTLQELSL 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++ V A +F H +RS +G+L VGDG K L A R + P Sbjct: 181 VRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVHVVRP 240 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 241 HGLTLEEVGY 250 >gi|19551801|ref|NP_599803.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|62389456|ref|YP_224858.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC 13032] gi|41324790|emb|CAF19272.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 294 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 96/258 (37%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + + + Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLLPDDIRVHGVRFAEPGFDARFSAMRRHYV 125 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y A A A L ++ + Sbjct: 126 YRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHATTVRELQ 185 Query: 172 IDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + + + E VVA +F + +RS VGS VG+G+ S + L A +R Sbjct: 186 KFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTAELLDASERS 245 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 246 PMVPVAPAKGLSLVGVDY 263 >gi|21673806|ref|NP_661871.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] gi|42559829|sp|Q8KDR7|TRUA_CHLTE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|21646936|gb|AAM72213.1| tRNA pseudouridine synthase A [Chlorobium tepidum TLS] Length = 247 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 104/251 (41%), Gaps = 9/251 (3%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R M IEY+G+GY GWQRQ + ++QG IE+ + + E V + GAGRTDSGV Sbjct: 1 MARSKRTIKMQIEYDGTGYSGWQRQPGDVVTVQGEIERVLERIMQEPVSIDGAGRTDSGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA RQVA F L + N+ L + I+ + + ++ YR Sbjct: 61 HARRQVASFATCSPMPLGRLIYSANSLLPSTIRINAMRQAPESFHARFSATS----REYR 116 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + P A++ A D M A L+G HDF F + T+ Sbjct: 117 YFLLEHPSAIDSRFAGCSHGKPDVGAMNRLALMLIGTHDFAAFSKETPDQYGTLCTVTAA 176 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G R+ A FL + +R V + VG G+ + L++ R A Sbjct: 177 RWYRSGRFHVFRIEANRFLRSMVRFLVAGMIEVGMGRLEEGAFARMLESGHRPPKLKPAD 236 Query: 236 PEGLYFDSVEY 246 GL+ V Y Sbjct: 237 AAGLFLWKVRY 247 >gi|253582682|ref|ZP_04859903.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] gi|251835552|gb|EES64092.1| tRNA pseudouridine synthase A [Fusobacterium varium ATCC 27725] Length = 246 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 113/246 (45%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++GS ++G+QRQ ++QG IEK + +V E V + AGRTD GVHAL Q Sbjct: 5 MKNIKIRYRFDGSMFYGFQRQPGKRTVQGEIEKLLEVVLREKVNMISAGRTDRGVHALEQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L ALN L I I + VD F++RF A R Y Y I Sbjct: 65 VSNFFTTSPIPVEKLKYALNKGL--PLDIEIFEVEEVDMNFNSRFFAKNRGYKYII--SW 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E L+ + +D E + L+G HDF FR C + + IR I V Sbjct: 121 VKNPFESRYVTLVREKIDKEIFFKILEPLIGVHDFNNFRLSDCGSKTSIREIYSIVVEEK 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + + + SFL +QIR +G+ + G + L L+ + +A P GLY Sbjct: 181 ENKLIVEIKGNSFLKSQIRIIIGTALDIYFGNYDENHLRDMLENPKKDFLKKVADPYGLY 240 Query: 241 FDSVEY 246 + Y Sbjct: 241 LSEINY 246 >gi|229821589|ref|YP_002883115.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] gi|229567502|gb|ACQ81353.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333] Length = 286 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 78/256 (30%), Positives = 115/256 (44%), Gaps = 12/256 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ ++QG +E+A+ V E + AGRTD+GVHA Q Sbjct: 6 RVRLDLAYDGAAFAGWARQPGLRTVQGDLEEALGRVLRLPEPPRLTVAGRTDAGVHARGQ 65 Query: 61 VAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRS 111 VAH DL RE + AL L + + +++ F ARFSAI R Sbjct: 66 VAHVDLPREAYLAAPGRSERDPGAALRTRLAGVLPPDVVVGHVAPAPPGFDARFSAIWRR 125 Query: 112 YLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 Y YR+ A L +G + LD M AA+ L+G HDF F A++ Sbjct: 126 YAYRVADDGALHDPLRRGWTVWHRRPLDVVAMDAAARRLLGEHDFAAFCRPREGATTIRT 185 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + V L+ V A +F H+ +R+ VG+ VG+ + L A R Sbjct: 186 LQELTWVRDDAGLLVAHVRADAFCHSMVRALVGACLAVGESRREVGWPRAVLDAARRDSA 245 Query: 231 GPLAPPEGLYFDSVEY 246 +AP GL + + Y Sbjct: 246 VQVAPAHGLVLEEIGY 261 >gi|289523335|ref|ZP_06440189.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503027|gb|EFD24191.1| tRNA pseudouridine synthase A [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 268 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 4/246 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R+ ++ Y+GS + G+QRQK+ +++ ++E+A+ L+ G V V GAGRTD GVHAL Q Sbjct: 6 RFAALLSYDGSAFHGFQRQKDLPTVELALEEALNLLDKKGRRVKVTGAGRTDRGVHALGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD+ P L KAL A L +I + + VD FHAR SA+ R Y Y I Sbjct: 66 VVHFDISWPHGPTALRKALEANL--PSSIGVYEVVPVDFAFHARRSALWRKYAYFIWKGD 123 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L W + D + + + G HDF F + S RTI + Sbjct: 124 CRLPHLGRYVWWNRRGWDMDLAKKFLTMIEGFHDFGAFCRKADRPSDARRTIMEARIEEK 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+++ V RSFL +R VG++ + G+ + ++ + L R E GP AP +GL+ Sbjct: 184 GPLLKVSVTGRSFLTNMVRIIVGTMDEIATGRKSLEEVCRLLDGGSRGEAGPTAPAKGLF 243 Query: 241 FDSVEY 246 V Y Sbjct: 244 LWEVRY 249 >gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045] Length = 288 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 112/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGTGFSGWAKQAGGRRTVQGEIEDALRTVTRSRETFELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL RE K L + + L F ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHGKLLKRLAGRLPRDVRVWALREAPAGFDARFSAVWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKKREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ V A +F H +RS +G+L VGDG K L A R + P Sbjct: 190 ARGGDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRAPDWPAKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|145294737|ref|YP_001137558.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum R] gi|140844657|dbj|BAF53656.1| hypothetical protein [Corynebacterium glutamicum R] Length = 294 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 96/258 (37%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW +Q + ++Q +E + +V E V + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWAKQGTSDLRTVQKVLEDNLSMVLRETVELTVAGRTDAGVHAAG 65 Query: 60 QVAHFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + + + Sbjct: 66 QVAHFDIPAHALEQRSIDGDPSKLVRRLGRLLPDDIRVHGVRFAEPGFDARFSAMRRHYV 125 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y A A A L ++ + Sbjct: 126 YRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAFCKAKPHATTVRELQ 185 Query: 172 IDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + + + E VVA +F + +RS VGS VG+G+ S + L A +R Sbjct: 186 KFAWKDVSTDIEPQVYEAHVVADAFCWSMVRSLVGSCMAVGEGRRGSGFTTELLDASERS 245 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 246 PMVPVAPAKGLSLVGVDY 263 >gi|116328579|ref|YP_798299.1| pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121323|gb|ABJ79366.1| Pseudouridylate synthase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 265 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 5/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y +++EY+G + G+Q QK+ SIQ ++EKA+ ++ E + + GAGRTD+GVHA V Sbjct: 1 MNYALLVEYDGLCFNGFQTQKDLPSIQENLEKAVKILLKEEISITGAGRTDTGVHARGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + V L+ +SIL ++ V + F +RFS R Y Y I+ + Sbjct: 61 VNFKT-IKTVQNFNKFLLSMNAITDSGLSILGMTEVGENFDSRFSCNSREYEYLILNTKY 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDH---FDV 177 P + K RA+ +D ++ + L + ++ + S IRTI Sbjct: 120 PRPIWKNRAFWYQHKIDVPRLKTELELLKGEHDFRSLAKTASMKDRSTIRTILDAKLERS 179 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + L++I++ A FLH IR G+L + +GK ++ L ++DR G PP Sbjct: 180 SEWEGLLKIKIRANGFLHNMIRILTGTLLEIANGKLKVPNILDILSSKDRTIAGITLPPY 239 Query: 238 GLYFDSVEY 246 GLYF Y Sbjct: 240 GLYFLRAYY 248 >gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 279 Score = 155 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q ++QG +E A+ V V + AGRTD+GVHA Q Sbjct: 6 VRVRLDVAYDGTDFSGWAAQPGRRTVQGELEAALARVLRLPEVSLTCAGRTDAGVHARGQ 65 Query: 61 VAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 VA D+ + L + + + + F ARFS + R YLYR+ Sbjct: 66 VAQADIPARTWESEGERVLRRLAGVLPKDVRVRAARLAPPGFDARFSPLFRRYLYRVSDA 125 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + LD + M AA+ LVG HDF F A++ + Sbjct: 126 PYGVDPLLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAFCKRREGATTIRELLRLEWTR 185 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 +L+ + A +F H +R+ VG+L VGDG+ + K L A R + P+G Sbjct: 186 VDEHLLHGTIQADAFCHNMVRALVGALLAVGDGRRDADWPGKVLGAGTRDSSVHVVGPQG 245 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 246 LSLEEVRY 253 >gi|257467128|ref|ZP_05631439.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|315918259|ref|ZP_07914499.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] gi|313692134|gb|EFS28969.1| tRNA pseudouridine synthase A [Fusobacterium gonidiaformans ATCC 25563] Length = 245 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +Y+GS + G+QRQ ++QG IEK +F + E + + +GRTD GVHA+ Q Sbjct: 1 MKNIKISYQYDGSSFMGFQRQPEKRTVQGEIEKCLFRILKEKIDLTSSGRTDRGVHAMHQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L AL+ L + L + D ++ Y Sbjct: 61 VSNFFTAVNIPLDKLFYALSHCLPEDILLLELEEARKDFHARF----SAKTRSYCYRITW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 E+ + K +D ++ + +G+H+F FR ++PIR I V Sbjct: 117 KKSPFERRYKTYVKKKIDSQSFFKILEIFMGKHNFQNFRLQDDAFANPIREIYSIQVKEV 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I + A +FL +QIR +G+ V K S +EK L+ D++ LA P GLY Sbjct: 177 DEGMDIYIEANAFLKSQIRIMLGTAFQVYFQKVESNRIEKMLKEPDKEFPKYLADPNGLY 236 Query: 241 FDSVEY 246 ++Y Sbjct: 237 LYHIKY 242 >gi|302543331|ref|ZP_07295673.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus ATCC 53653] gi|302460949|gb|EFL24042.1| tRNA pseudouridine synthase A [Streptomyces himastatinicus ATCC 53653] Length = 283 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRERRTVQGELESALGTVTRSSETPDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L + + ++ F+ARFSAI R Y YR++ Sbjct: 70 QVAHVDLPEELWAEHRDKLLRRLAGRLPHDVRVWRVAAAPPGFNARFSAIWRRYAYRVVD 129 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G LD + M A+ L+G HDF + A++ Sbjct: 130 HPGGVDPLLRGHVLWHDWPLDVDAMNAASAPLLGEHDFAAYCKRRDGATTIRTLQKLSWE 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +I V A +F H +RS VG+L GDG K L A R + P Sbjct: 190 RGADGVITATVRADAFCHNMVRSLVGALLFTGDGHRPVDWPGKVLAAGVRDSAVHVVRPH 249 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 250 GLTLEEVGY 258 >gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476] Length = 271 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 118/254 (46%), Gaps = 11/254 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + Y+G+ + G+ RQ ++QG +E A+ ++ V AGRTD+GVHA+ Q Sbjct: 17 LACKVAYDGAPFAGFARQAECDRVMTVQGELEHALRVLYRRDVRTTCAGRTDAGVHAIGQ 76 Query: 61 VAHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V FD+ + ++L L + D +S+ + F ARF A R Y YRI T Sbjct: 77 VVSFDVTEDEFASRTPRSLLRSLNALVDDHMSVSVVEEKPFGFSARFDAKWREYRYRIST 136 Query: 119 RQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTI 172 A L W LD + M AA HL+G HDF +F + + Sbjct: 137 AAARPVLIMPLVWHLGGVDLDIDAMNRAAVHLIGEHDFKSFCVAASAVGKPTCRNVMELE 196 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + +RVV +FLH+ +R+ VG+L VG G+ + L+A++R G Sbjct: 197 VFEEEILGQQVATVRVVGNAFLHSMVRTIVGTLVEVGRGRRNPEWVCDVLEARNRGAAGQ 256 Query: 233 LAPPEGLYFDSVEY 246 AP +GL F VEY Sbjct: 257 NAPAQGLVFWHVEY 270 >gi|298345431|ref|YP_003718118.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304390987|ref|ZP_07372939.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235492|gb|ADI66624.1| tRNA-pseudouridine synthase I [Mobiluncus curtisii ATCC 43063] gi|304325870|gb|EFL93116.1| tRNA pseudouridine synthase A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 297 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 84/271 (30%), Positives = 123/271 (45%), Gaps = 26/271 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++QG++E A+ ++ + V + AGRTD+GVHA QV Sbjct: 1 MRIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQV 60 Query: 62 AHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--------- 100 AHF D + + +L L+ L S Sbjct: 61 AHFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATV 120 Query: 101 ----FHARFSAIRRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 F ARFSA+ R Y+YRI+ A L + W P LD M +A L+G HDF Sbjct: 121 VPETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDF 180 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 F A++ + + ++EIRV A +F H+ +RS VG+L VG K + Sbjct: 181 AAFCKPREGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRDT 240 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L AL A+ R P+AP GL V+Y Sbjct: 241 AWLADALAAKARIPEIPVAPALGLTLTQVDY 271 >gi|33241136|ref|NP_876078.1| tRNA pseudouridine synthase A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|42559767|sp|Q7V9Y7|TRUA_PROMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33238666|gb|AAQ00731.1| Pseudouridylate synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 289 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 113/247 (45%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALRQ 60 R + I+Y GS + GWQRQK G +IQ +E AIF + + + V AGRTD+GVHA Q Sbjct: 16 KRIALSIQYQGSNFSGWQRQKVGHTIQAILEDAIFSLDSSKPAKVVAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L + I + + +HA SA+ R Y Y I Sbjct: 76 VVHFDSFGPIPVHRWPSALNGRL--PEAIRVRDSVEQSLDWHACHSAVYRRYRYIIYNGC 133 Query: 121 APL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L LD E M AA+ L+G HDF+ F+ + TI + Sbjct: 134 TPNLFLNPWTWHKYQYQLDEELMEEAAKGLIGMHDFSAFQRSGSNRTHAFTTIQEVKLVR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + A FL+ +R VG L +G+ + + D E + + R E AP GL Sbjct: 194 HGDLLVFDIQASGFLYGMVRLLVGQLVSIGEHRLSINDFETRWKLKLRSEVKEAAPARGL 253 Query: 240 YFDSVEY 246 F Y Sbjct: 254 CFIRAGY 260 >gi|255556594|ref|XP_002519331.1| pseudouridylate synthase, putative [Ricinus communis] gi|223541646|gb|EEF43195.1| pseudouridylate synthase, putative [Ricinus communis] Length = 344 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 132/255 (51%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ Y GWQ Q++ +IQ +EKA+ + + +++ GA RTD+GVHA Sbjct: 71 FKWRLVIAYDGTRYAGWQFQQSPPTIQCYLEKALIQVTKLDRKDLLLVGASRTDTGVHAF 130 Query: 59 RQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + + ALN L I + +S +FHARFS I + Y Y+I Sbjct: 131 GQVAHFVTPFNYPSLDTIHAALNGLL--PPDIRVREISPAVPEFHARFSTISKLYHYKIY 188 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHF 175 + A+ L+ MR AA++ +G HDF+ F + + +P++TI F Sbjct: 189 NDTFMDPFLRHYAYHSTYKLNAAAMRQAAKYFIGSHDFSAFANASRDDRVPNPVKTIFRF 248 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA- 234 DV G L+++ V FL+ Q+R+ V L +G + K L A+DR+E A Sbjct: 249 DVIEMGALLQLEVEGTGFLYRQVRNMVALLLQIGKEAVPPEIVPKILAARDRRELAKYAL 308 Query: 235 --PPEGLYFDSVEYS 247 PP GL S++Y+ Sbjct: 309 PTPPHGLCLVSIKYN 323 >gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74] Length = 284 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 117/250 (46%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ ++Q ++E+A+ +VT E + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTEFHGWARQPAGRRTVQETLEEALRVVTRAPEPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH ++ E K L + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVEMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVA 120 Query: 118 TRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + A++ F Sbjct: 121 DQPGGADPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKREGATTIREMQRLFW 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++E V A +F H +RS VG+L VGDG + K L A R + P Sbjct: 181 TRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRP 240 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 241 VGLTLEEVGY 250 >gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG] gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78] Length = 284 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH + E K L + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVA 120 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + A++ F Sbjct: 121 DQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKREGATTIREMQQLFW 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++E V A +F H +RS VG+L VGDG + K L A R + P Sbjct: 181 TRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRP 240 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 241 VGLTLEEVGY 250 >gi|312199990|ref|YP_004020051.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] gi|311231326|gb|ADP84181.1| tRNA pseudouridine synthase A [Frankia sp. EuI1c] Length = 297 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 2/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA RQ Sbjct: 29 QRLRIDLAYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHAARQ 88 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAH D+ E L + LN L + I + + V + R +Y Sbjct: 89 VAHVDIPDEVPLGGLARRLNGVLDRAVRILGIGPAPVGFDARFSALSRRYNYRIS-DAPY 147 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + P+ LD MR+AA L+G HDF F A++ + Sbjct: 148 GADPLRRHDTLAWPRPLDPAVMRLAALALLGEHDFAAFCRRREGATTVRTLLRLDVRRGP 207 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ V A +F H+ +R+ VG+L VG+G+ + + L R + P GL Sbjct: 208 DGVLVADVEADAFCHSMVRALVGALVGVGEGRQPPGWIPQMLARAVRSPGVTVLPAHGLT 267 Query: 241 FDSVEY 246 V Y Sbjct: 268 LVEVRY 273 >gi|254391364|ref|ZP_05006567.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] gi|197705054|gb|EDY50866.1| tRNA pseudouridine synthase A [Streptomyces clavuligerus ATCC 27064] Length = 284 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 106/250 (42%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+G + GW RQ G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 6 VRVRLDLSYDGRDFSGWARQAGGRRTVQGEIEDALRTVTRSARPYELTVAGRTDAGVHAR 65 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH DL E K L + I F+ARFSA+ R Y YR+ Sbjct: 66 GQVAHVDLPAEVWAEHREKLLKRLAGRLDRDVRIWRAEEAPAGFNARFSAVWRRYAYRVS 125 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD M A+Q L+G HDF + A++ Sbjct: 126 DHPGGVDPLLRGHVLWHDWPLDVAAMNAASQPLLGEHDFAAYCKKREGATTIRTLQRLSW 185 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 +I V A +F H +RS VG+L VGDG K L A R + P Sbjct: 186 ERDAAGVITATVRADAFCHNMVRSLVGALLFVGDGHRPVDWPGKVLAAGVRDSAVHVVRP 245 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 246 HGLTLEEVGY 255 >gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 323 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELHLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSAHSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFD 176 ++ A+ L+ MR AA VG HDF+ F + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGMHDFSAFANATREDGLPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTTL 279 Query: 233 LAPPEGLYFDSVEY 246 APP GL SV+Y Sbjct: 280 PAPPHGLCLVSVKY 293 >gi|85057773|ref|YP_456689.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] gi|123738898|sp|Q2NIY3|TRUA_AYWBP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84789878|gb|ABC65610.1| tRNA pseudouridine synthase A [Aster yellows witches'-broom phytoplasma AYWB] Length = 243 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN L + ++ + + +S +Y+ + + PL Sbjct: 66 FQTTFSLKPKHFQKTLNYLLPPDIRVRQMHFA----TPNFHARYSAKSKIYQYVFSKKPL 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + D + A + + G H+F F + Q + +TI + + Sbjct: 122 NAFNHHFQIFADKFDFVKITKALKFIEGTHNFFAF-TSETQPKNFSKTIFQASLKETVHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K++ + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKKATLLAPAKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1] Length = 292 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 114/252 (45%), Gaps = 7/252 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVH 56 +R + + Y+G+ + GW +Q+ ++QG +E A+ +V + V + AGRTD+GVH Sbjct: 10 VRVRLNLSYDGTDFSGWAKQRGRDTVRTVQGELESALKVVMRMQDPVELTVAGRTDAGVH 69 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A QVAH DL K L I + ++ F+ARFSAI R Y+YR Sbjct: 70 ARGQVAHVDLPEPIWAEHHEKLLRRLAGRLPHDIRVWSVGEAPPGFNARFSAIWRRYVYR 129 Query: 116 IITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 ++ L +G LD + M AAQ L+G HDF + A++ Sbjct: 130 VVDHPGGVDPLLRGHVLWHDWPLDVDAMNEAAQKLLGEHDFAAYCKKRDGATTIRTLQRL 189 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +I V A +F H +RS VG+L VGDG + K L A R + Sbjct: 190 SWERGPDGIITATVRADAFCHNMVRSLVGALLFVGDGHRPADWPAKVLAAGVRDSAVHVV 249 Query: 235 PPEGLYFDSVEY 246 P GL + V Y Sbjct: 250 RPHGLTLEQVGY 261 >gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071] Length = 284 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA Sbjct: 1 MRLRLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAH + E K L + + ++ + F ARFSAI R Y YR+ Sbjct: 61 GQVAHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFEARFSAIWRRYAYRVA 120 Query: 118 TRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L +G + LD + M AA+ L+G HDF + A++ F Sbjct: 121 DQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKREGATTIREMQQLFW 180 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++E V A +F H +RS VG+L VGDG + K L A R + P Sbjct: 181 TRRADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRP 240 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 241 VGLTLEEVGY 250 >gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)] gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] gi|8134769|sp|O86776|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)] gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24] Length = 284 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 113/250 (45%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSRETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL RE K L + + L F+ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPREVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKKREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++ V A +F H +RS +G+L VGDG K L A R + P Sbjct: 190 VRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGPEWPAKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|297571891|ref|YP_003697665.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] gi|296932238|gb|ADH93046.1| tRNA pseudouridine synthase A [Arcanobacterium haemolyticum DSM 20595] Length = 293 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 77/267 (28%), Positives = 121/267 (45%), Gaps = 24/267 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++Q +EKA+ +V E VV+ AGRTD+GVHA QVA Sbjct: 10 RVRLDLGYDGNHFHGWAAQPGLRTVQDELEKALSVVFREPVVLTVAGRTDAGVHARHQVA 69 Query: 63 HFDLVREWVPVILCK-----------ALNAYLKIS------------DTISILNLSIVDK 99 H D+ R + + LN+ L S + + + V Sbjct: 70 HCDVSRAAWDALPGRSSRTPGESLVLRLNSLLARSAGGVVAGAPRGYSDVVVHSALEVPA 129 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R+Y YRI A ++ + LD + M A+ L+G HDF ++ Sbjct: 130 DFDARFSALWRAYTYRIADSVAEWDPQRHDVLWLSDRLDLDAMNRASVALLGEHDFLSYC 189 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + +S IRT+ ++ R A +F H+Q+R+ +G+L VG G Sbjct: 190 KPR-EGASTIRTLLDLGFERVEGIVVGRAKADAFCHSQVRTLMGTLIEVGRGAREERWPL 248 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 L+ R +APP L + + Y Sbjct: 249 LRLEECSRDGQVVVAPPHPLTLEEIGY 275 >gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083] Length = 289 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 114/251 (45%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHA 57 +R + + Y+GS + GW +Q G ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L + + +L F+ARF+A+ R Y+YR+ Sbjct: 70 RGQVAHVDLPEGLWAEHRDKLLKRLAGRLPKDVRVWSLREAPAGFNARFAALWRRYVYRV 129 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + L + LD M AA+ LVG HDF + A++ +D Sbjct: 130 GDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFAAYAKRREGATTIREILDFG 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++EI V A +F H Q+RS VG+L VGDG K L A R + Sbjct: 190 VRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLDAGVRDSAVHVVR 249 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 250 PHGLTLEEVAY 260 >gi|284042832|ref|YP_003393172.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] gi|283947053|gb|ADB49797.1| tRNA pseudouridine synthase A [Conexibacter woesei DSM 14684] Length = 261 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 8/243 (3%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAH 63 + +EY+G + GW RQ +++ ++E+A+ V V + AGRTD+GVHA Q A Sbjct: 9 RLTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEAS 68 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 ++ LNA L D +++++ F AR A R+Y YR++ R++ Sbjct: 69 YEGPP-----AAPHRLNALL--PDDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRS 121 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 A E+GRA P LD + + A L G HDFT F R + H + G++ Sbjct: 122 AHERGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDM 181 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 ++ + A +F+ R VG++ V + + L R G APP GLY Sbjct: 182 LQFSIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAG 241 Query: 244 VEY 246 V Y Sbjct: 242 VGY 244 >gi|311740028|ref|ZP_07713862.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] gi|311305101|gb|EFQ81170.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium ATCC 33035] Length = 297 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREWVPVILC--------KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E + + L L + + Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLLPEDVRVHGCEFAPAGFDARFSALRRHYVY 140 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 R A + A I A + ++ + Sbjct: 141 RITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCKAKPNATTIRELQE 200 Query: 173 DHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L E RV A +F + +RS VG VG+G+ + LQ R Sbjct: 201 FSWRDASTPEEPELFEARVSADAFCWSMVRSLVGCCLRVGEGRRDADFAAALLQETKRSS 260 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP +GL +V+Y Sbjct: 261 SIPVAPAKGLSLVAVDY 277 >gi|300932964|ref|ZP_07148220.1| tRNA pseudouridine synthase A [Corynebacterium resistens DSM 45100] Length = 324 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 122/258 (47%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+R + + Y+G+ + GW Q ++QG +E+ + LVT V + AGRTD+GVHA Q Sbjct: 40 MVRVRLDVAYDGTDFHGWAAQFGLRTVQGVLEEKLSLVTRHAVQLTVAGRTDAGVHADGQ 99 Query: 61 VAHFDLVREWVPVIL-------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 VAHFD+ + L+ L + + S F ARFSA+RR Y+ Sbjct: 100 VAHFDVPATTFTQRSLQRPGDLVRRLSRML--PADVRVHGASEAPVGFDARFSALRRHYV 157 Query: 114 YRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A + R + +D + ++ A++ LVG +DF F A++ Sbjct: 158 YRVTTATAGPRPVRVRDTARWRRPIDLDKVKAASEVLVGLNDFAAFCKAREGATTIRELQ 217 Query: 173 DHFDVNS----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + E RV A +F + +RS VG++ VG+GK + L+ +R Sbjct: 218 QFQWFDVSTPAEPETYEARVAADAFCWSMVRSLVGAVLTVGEGKRDGDFTAELLKQNERS 277 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP EGL V+Y Sbjct: 278 SKVPVAPAEGLNLVQVDY 295 >gi|256380565|ref|YP_003104225.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] gi|255924868|gb|ACU40379.1| tRNA-pseudouridine synthase I [Actinosynnema mirum DSM 43827] Length = 314 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 109/245 (44%), Gaps = 2/245 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ N ++ G +E + V E VV+ AGRTD+GVHA QV Sbjct: 37 VRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQV 96 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL L K L L + + + +V F ARF+A+RR Y YR+ Sbjct: 97 AHVDLPEAADVAGLPKRLARAL--PADVRVFSARVVPAAFDARFAALRRHYEYRVTDAPF 154 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + L AA L+ + ++ IR + + G Sbjct: 155 GAHPLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAYCRRREGATTIRELQRLEWVREG 214 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +L+ V A +F H+ +RS VG+L VG+G+ L R +APP GL Sbjct: 215 DLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLSL 274 Query: 242 DSVEY 246 V+Y Sbjct: 275 VRVDY 279 >gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus tauri] Length = 705 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 81/259 (31%), Positives = 119/259 (45%), Gaps = 18/259 (6%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSGVHALR 59 Y M I Y+G+ Y G+QRQ + +S+Q +E+ + +TGE + + G+GRTD GVHA Sbjct: 17 YAMTISYDGTNYKGFQRQGADVASVQRELERCLTRLTGEGRDALRLGGSGRTDGGVHARG 76 Query: 60 QVAHFDLVREWV----PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV HF ++W KA+N L + FHARF A R++Y Y Sbjct: 77 QVVHFYSEKDWRSAEDFARCVKAMNGML--PRDVRCERFWRPHPAFHARFHATRKTYAYY 134 Query: 116 IITRQAPLALEKGRAWLIPKS-LDCENMRIAAQHLVGRHDFTTF------RSIHCQASSP 168 + R + A D + +R A Q+ VG DF F + + + Sbjct: 135 VDARSPHDVFARAYACQCGWRACDVDALRRACQYFVGTRDFRAFANTSRDKPTSDEDLNT 194 Query: 169 IRTIDHFDVNSF-GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 RTI FDV LI + FL+ Q+R+ VG+ +V G+ + L + DR Sbjct: 195 TRTIFRFDVFEQADGLIRLECEGDGFLYRQVRNMVGAALVVASGREKPEWILDLLASGDR 254 Query: 228 KECGPLAPPEGLYFDSVEY 246 + AP GL+ SVEY Sbjct: 255 RRVPTAAPARGLFLQSVEY 273 >gi|160878286|ref|YP_001557254.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] gi|160426952|gb|ABX40515.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg] Length = 264 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 11/254 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +II Y+G+ Y GWQR SIQG +E+ + V E + + G+GRTD+GVHA Sbjct: 9 RNIKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTDTGVHA 68 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QVA+F I+ + +N L + I IL + VD FH+RF A+ + Y Y I Sbjct: 69 LGQVANFYSRSNLDVNIIRQKMNQVL--PEDIKILQANEVDLNFHSRFDAVEKIYQYIID 126 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 T++ + ++ K LD E MR AA+ L+G D+ +F + S IRTI Sbjct: 127 TKERESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISEITI 186 Query: 177 ----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 N I FLH IR G+L VG + + + +A+ + R+ G Sbjct: 187 EELRQNRNQQGIIFTFRGNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREYAGI 246 Query: 233 LAPPEGLYFDSVEY 246 P+GL+ V Y Sbjct: 247 TLYPQGLFLKQVIY 260 >gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726] Length = 293 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 94/257 (36%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 17 VRLRLDLAYDGTNFHGWAKQKGGLRTVQGVLEEQLAMIVRTEVPLTVAGRTDAGVHARGQ 76 Query: 61 VAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ +E P + + L L + + Y Sbjct: 77 VAHVDVPQEMLEQRSVAGDPGTIVRRLAKLLPEDVRVHGCEFAPEGFDARFSALRRHYVY 136 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 R A + A A + ++ + Sbjct: 137 RITTSPRGALPTRARDTAEWFKPVDIDAMQDAATALVGLHDFAAFCKAKPNATTIRELQE 196 Query: 173 DHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L E RV A +F + +RS VG VG+G+ LQ R Sbjct: 197 FSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCCLSVGEGRRDVDFAAALLQETKRSS 256 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 257 RIPVAPAKGLSLVQVDY 273 >gi|255324781|ref|ZP_05365895.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] gi|255298256|gb|EET77559.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum SK141] Length = 297 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW +QK G ++QG +E+ + ++ V + AGRTD+GVHA Q Sbjct: 21 VRLRLDLAYDGTDFHGWAKQKGGLRTVQGVLEEKLAMIARTEVPLTVAGRTDAGVHARGQ 80 Query: 61 VAHFDLVREWVPVILC--------KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VAH D+ E + + L L + + Y Sbjct: 81 VAHVDVPTEMLAQRSVAGEPGKLVRRLAKLLPEDVRVHGCEFAPAGFDARFSALRRHYVY 140 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 R A + A I A + ++ + Sbjct: 141 RITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCKAKPNATTIRELQE 200 Query: 173 DHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L E RV A +F + +RS VG VG+G+ + LQ R Sbjct: 201 FSWRDVSTPEEPELYEARVSADAFCWSMVRSLVGCCLRVGEGRRDTDFAAALLQETKRSS 260 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP +GL +V+Y Sbjct: 261 SIPVAPAKGLSLVAVDY 277 >gi|54022806|ref|YP_117048.1| tRNA pseudouridine synthase A [Nocardia farcinica IFM 10152] gi|62901243|sp|Q5Z1K7|TRUA_NOCFA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54014314|dbj|BAD55684.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152] Length = 257 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 2/230 (0%) Query: 17 GWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC 76 GW RQ ++QG +E A+ V E + + AGRTD+GVHA QVAHFD E+ L Sbjct: 2 GWARQPGLRTVQGVLEDALGKVLREPIQLTVAGRTDAGVHAEGQVAHFDTAAEFDGPQLV 61 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 L +L + ++ D Y A + Sbjct: 62 HRLARFLPKDVRVKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAEPLAARSVVPCKSAV 121 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 R + L R + ++ +R + FD G+L+ V A +F + Sbjct: 122 DVDAMRRASGLLLGLHDFAAFCR--RREGATTVRELQRFDWERQGDLLLAHVSADAFCWS 179 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +RS VG++ VG+G+ + + L+ R +AP GL +V+Y Sbjct: 180 MVRSLVGAVLAVGEGRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDY 229 >gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis FRC41] gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis C231] gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis I19] Length = 291 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 8 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 67 Query: 60 QVAHFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + L+ Sbjct: 68 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLLPEDVRVHACTLAPEGFDARFSALRRHYV 127 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y R A A + A + + + Sbjct: 128 YRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGATTIRDLQ 187 Query: 172 IDHFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + S L E V A +F + +RS VGS ++G+GK ++ L R Sbjct: 188 EFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLTETSRS 247 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 248 SQVPVAPAKGLSLVGVDY 265 >gi|118473191|ref|YP_885908.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] gi|118174478|gb|ABK75374.1| tRNA pseudouridine synthase A [Mycobacterium smegmatis str. MC2 155] Length = 291 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 106/259 (40%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I++A+ V VV AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVIDEALTTVFRTPVVTRVAGRTDTGVHATGQV 70 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ E +P + L +L + + + Sbjct: 71 AHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRDIVRAPAGFDARFSALR 130 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y P E + LD + M AAQ L+G +DF F A++ Sbjct: 131 RHYVYRLTTA-PYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGLNDFAAFCRYRAGATT 189 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + + G I V A +F +RS VG+L VG+G+ + + L A R Sbjct: 190 -IRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRRSPEWTAELLGATSR 248 Query: 228 KECGPLAPPEGLYFDSVEY 246 P AP GL +V+Y Sbjct: 249 SSEFPAAPARGLTLAAVDY 267 >gi|149916968|ref|ZP_01905469.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] gi|149822246|gb|EDM81637.1| tRNA pseudouridine synthase A [Plesiocystis pacifica SIR-1] Length = 285 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 111/266 (41%), Gaps = 26/266 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y+G+ + G+ RQ NG +IQG +E+A+ + + + GA RTD+GVHA Q Sbjct: 4 LLRVAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ--FHARFSAIRRSYLYRIIT 118 + FD L L A L S L+ + + RF + Y YR+ Sbjct: 64 LVAFDPPFAIPARGLLLGLAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRYRLRP 123 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-------- 170 L W +P+ +D M+ AA G HDF FR+ CQA S R Sbjct: 124 VSLRDPLSARYEWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRSVIVN 183 Query: 171 ------------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + + I V +FL +R VG+L VG G++ + + Sbjct: 184 VETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFGAERI 243 Query: 219 EKALQAQDRKECGPLAPPEGLYFDSV 244 ++ L + DR G AP GL V Sbjct: 244 DEVLASGDRTRAGVTAPACGLTLVEV 269 >gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122] Length = 331 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 117/258 (45%), Gaps = 15/258 (5%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ + G+ RQ + +++QG +E+ + ++ V AGRTD+GVHAL QV Sbjct: 74 VALGVAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDAGVHALGQV 133 Query: 62 AHFDLVREWVPVILCKALNAYLK--ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 FDL E + L + + + I++ F ARF A R Y Y I T Sbjct: 134 VSFDLTEEEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATG 193 Query: 120 QAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSI----------HCQASSP 168 A L W LD + M AA+ LVG HDF +F Sbjct: 194 NARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCRRV 253 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 I ++E+R+V +FLH+ IR VG+L VG G+ ++ + L A+DR Sbjct: 254 IEADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAARDRT 313 Query: 229 ECGPLAPPEGLYFDSVEY 246 G AP GL F SV Y Sbjct: 314 AAGETAPACGLTFWSVRY 331 >gi|294783832|ref|ZP_06749154.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] gi|294479644|gb|EFG27423.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA] Length = 246 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 113/247 (45%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA +QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPDKVTVQGEIEKILKIVTKEDINLISAGRTDRGVHANQQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L I IL++ VDK F+AR A R Y+Y I Sbjct: 64 SNFYTSSNIPVEKYKYLLTRAL--PKDIDILSVEEVDKNFNARHDAKMREYIYII--SWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + +D E ++ +G HDF FR C + IR I D+N F Sbjct: 120 KNPFEARYCKFVKNKIDVEKLKKIFSSFLGIHDFRNFRLSDCVSKITIREIYSIDINYFS 179 Query: 182 NLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I + +FL +Q+R VG+ V G +E L + L EGLY Sbjct: 180 ENKLKIYIRGSAFLKSQVRIMVGTALEVYYGNLPENHIELMLNDFSKDYKKNLVEAEGLY 239 Query: 241 FDSVEYS 247 + + YS Sbjct: 240 LNKIYYS 246 >gi|239636202|ref|ZP_04677206.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] gi|239598218|gb|EEQ80711.1| tRNA pseudouridine synthase A [Staphylococcus warneri L37603] Length = 267 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHISIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVKQVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKLFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|291298744|ref|YP_003510022.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] gi|290567964|gb|ADD40929.1| tRNA pseudouridine synthase A [Stackebrandtia nassauensis DSM 44728] Length = 300 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 115/247 (46%), Gaps = 2/247 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G + A+ + G+ + AGRTD+GVHA QV Sbjct: 22 VRLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQV 81 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITR 119 AH D+ + L I + I ++ V +F+ARFSA+ R Y+YR+ T Sbjct: 82 AHVDVPAAAWARYRDRPLWRLRGILPPDVRITAITEVSSEFNARFSALSRRYVYRVADTV 141 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + P+ +D + M AA LVG HDF F A++ Sbjct: 142 WGVNPLRRLDTVAWPRPVDLDVMNAAATVLVGEHDFAAFCKRREGATTVRALRTVRWDRD 201 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + VVA +F H+ +RS VG++ VG+G+ + L L +R +AP GL Sbjct: 202 ADGIARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSGEVLVAPANGL 261 Query: 240 YFDSVEY 246 VE+ Sbjct: 262 TLVEVEF 268 >gi|166030569|ref|ZP_02233398.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] gi|166029571|gb|EDR48328.1| hypothetical protein DORFOR_00232 [Dorea formicigenerans ATCC 27755] Length = 244 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 129/247 (52%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+G+ Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTISYDGTRYQGWQRQATTDNTIQHILEWSIGKLVGYRVRVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L ++N YL + I I+ + ++ FHAR SA + Y Y I R Sbjct: 61 QVASVQLSKLYDVKELKDSINRYL--PEDIRIMKVELMKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P LD E MR AA +++G +FT+F + + P+R + + + S Sbjct: 119 EKPDVFSRRYCYHYPHKLDIEAMREAADYMIGPKNFTSF-TDDSENKDPVRRVTNIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I F++ +R G+L VG G+ ++ + + A+DR G LAP GL Sbjct: 178 NGEKLRITYYGTGFMYHMVRIMTGTLLEVGTGEREASMIPVVIAAEDRSLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|167759303|ref|ZP_02431430.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] gi|167663177|gb|EDS07307.1| hypothetical protein CLOSCI_01650 [Clostridium scindens ATCC 35704] Length = 244 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 126/247 (51%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 1 MRTYKLTIAYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + L +LN YL + I I+ + +V FHAR SA + Y Y I R Sbjct: 61 QVASVKLSKLYDTKELKDSLNRYL--PEDIRIVKVELVKNGFHARKSAKGKKYEYYIDCR 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A Q+L+G +FT+F R I + + S Sbjct: 119 EKPDVFSRRYCYHYPEKLDIEAMRDAVQYLIGPKNFTSFTDDKECKDPIRRII-NIKIVS 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + I FL+ +R G+L +G GK ++ L + A+DR G LAP GL Sbjct: 178 TGEKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDASMLPVVIAAEDRCLAGFLAPARGL 237 Query: 240 YFDSVEY 246 + V Y Sbjct: 238 FLRKVYY 244 >gi|124026684|ref|YP_001015799.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] gi|123961752|gb|ABM76535.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. NATL1A] Length = 276 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 114/249 (45%), Gaps = 5/249 (2%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M R ++I+Y+G G+ GWQ QK+ ++QG++E+ I + V AGRTDSGVHA Sbjct: 1 MTNRIALVIQYDGLGFRGWQNQKDSITVQGTLEEKIAELDPIRPVKAIAAGRTDSGVHAS 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L +I +L V +HA +SA R Y Y I Sbjct: 61 GQVVHFDCSGPIPIHKWASALNGRL--PASIKVLEAVSVPSAWHACYSAKYRRYRYSIFN 118 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L L+ LD M+ A L+G HDF F+ S+ + T+ + Sbjct: 119 GSYPNLFLQNISWHKYRFKLDINLMKQALNDLLGLHDFAAFQKAGSNRSNSLTTVQDVSI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + G+++ + + A FL+ +R +G L VG+ + + + R E AP Sbjct: 179 SRDGDIVTVEIQASGFLYGMVRLLMGQLVAVGEKRLSLEKFRYRWRKGLRSEVKEAAPAH 238 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 239 GLCLIRVGY 247 >gi|296394888|ref|YP_003659772.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] gi|296182035|gb|ADG98941.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985] Length = 278 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 7/249 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW RQ ++ G IE+A+ + + AGRTD+GVHA QVA Sbjct: 10 RLRLDVAYDGTEFSGWARQPGRRTVAGVIEEALSTLLQSSAQLTVAGRTDAGVHATGQVA 69 Query: 63 HFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 H D+ + P L + L L + Y + Sbjct: 70 HVDVRADLVSGRLPPEKLVRKLARMLPTDVRVLSAQKVSAQFDARFSALRRHYRY-HITR 128 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L + LD + + A+ LVG HDF F A++ IR + F+ Sbjct: 129 SVYGADPLRAREVVPWARPLDFDVLNAASSALVGLHDFAAFCRPRPGATT-IRELQRFEW 187 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI + A +F + RS VG++ V +G+ + L A R +AP Sbjct: 188 AESGVLITASITADAFCWSMCRSLVGAVTAVAEGRRDLAWIRSLLTASSRASEITVAPAH 247 Query: 238 GLYFDSVEY 246 GL V+Y Sbjct: 248 GLCLVGVDY 256 >gi|262066902|ref|ZP_06026514.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] gi|291379371|gb|EFE86889.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC 33693] Length = 248 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 109/247 (44%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 6 KNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L I IL++ V++ F+AR A + Y I Sbjct: 66 SNFYTSSSIPVGKYKYLLTRAL--PKDIDILSVEEVNEDFNARHDA--KMREYVYIISWD 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + +D E + +G HDF FR C + +R I DV F Sbjct: 122 KNPFETRYCKFVKDKIDAEKLERIFSSFLGVHDFKNFRLSDCVSKVTVREIYSIDVKYFS 181 Query: 182 NLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I + +FL +Q+R VG+ V + +E L ++ L EGLY Sbjct: 182 ENKLKIFIRGSAFLKSQVRIMVGTALEVYYKNLSENHIELMLNNFSKEYKKYLVEAEGLY 241 Query: 241 FDSVEYS 247 + + YS Sbjct: 242 LNKINYS 248 >gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis 1002] Length = 319 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 94/258 (36%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ ++Q +E ++ L+ + + AGRTD+GVHA Sbjct: 36 VRIRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLELILRHPIQLTVAGRTDAGVHAAG 95 Query: 60 QVAHFDLV--------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 QVAHFD+ + P L + L L + L+ Sbjct: 96 QVAHFDVPAIALDTRSIDGDPRNLVRRLARLLPEDVRVHACTLAPEGFDARFSALRRHYV 155 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y R A A + A + + + Sbjct: 156 YRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAAFCKHREGATTIRDLQ 215 Query: 172 IDHFDVNSF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + S L E V A +F + +RS VGS ++G+GK ++ L R Sbjct: 216 EFTWHDVSTSLEPQLYEAHVTADAFCWSMVRSLVGSCLVIGEGKRPEGFVDSLLTETSRS 275 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 276 SQVPVAPAKGLSLVGVDY 293 >gi|227832275|ref|YP_002833982.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|262183869|ref|ZP_06043290.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] gi|227453291|gb|ACP32044.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC 700975] Length = 286 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 114/257 (44%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW RQK G ++Q ++E+ + +V V + AGRTD+GVHA Q Sbjct: 5 VRLRLDLAYDGTDFHGWARQKGGLRTVQQTVEEKLSMVLRHPVELTVAGRTDAGVHASGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAHFD R + L + + + V F ARFSA+RR Y+Y Sbjct: 65 VAHFDTTRAALSQRSIDGEPHKLVRRLAKLLPVDVRVHACTEVSPDFDARFSALRRHYVY 124 Query: 115 RIITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 RI T + R K +D + M+ AA LVG +DF F A++ + Sbjct: 125 RITTHPRGALPTRARDTATWLKPVDLDLMQAAADRLVGLNDFVAFCKAKPHATTIRELLA 184 Query: 174 HFDVNS----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L E V A +F + +R VG VG+G + L R Sbjct: 185 FEWKDVSTPAEPQLYEAHVSADAFCWSMVRCLVGCCLRVGEGSRDVEFAGQMLNETSRSS 244 Query: 230 CGPLAPPEGLYFDSVEY 246 PLAP GL V+Y Sbjct: 245 QIPLAPAAGLSLVGVDY 261 >gi|114327354|ref|YP_744511.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] gi|114315528|gb|ABI61588.1| tRNA pseudouridine synthase A [Granulibacter bethesdensis CGDNIH1] Length = 270 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 119/255 (46%), Positives = 160/255 (62%), Gaps = 11/255 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---------NGSSIQGSIEKAIFLVT-GEIVVVHGAGRT 51 RY + IEY+G+ + GWQRQ S+Q +E+A + GE V AGRT Sbjct: 11 TRYALRIEYDGTPFIGWQRQGTDDSATAQGRAVSVQWVLEQAAARLARGEAVSSIVAGRT 70 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D+GVHA QVA DL + P + +ALN ++K ++IL + ++ARFSAI RS Sbjct: 71 DAGVHAQAQVAQIDLPTAFHPERVREALNFHMK-PYPVAILEAAYAPDGWNARFSAIGRS 129 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y I+ R+A AL +GR W + + LD + M AA+HL+GRHDFT+FR+ CQA SP+RT Sbjct: 130 YRYLILNRRARPALMEGRVWHVAQPLDADTMDGAAKHLLGRHDFTSFRAAACQAKSPLRT 189 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 +D DV G+LI I ARSFLH Q+R+ VG+LKLVGDG+WT+ + AL A+DR + G Sbjct: 190 LDRLDVRRDGDLITIIAEARSFLHHQVRNMVGTLKLVGDGRWTAEHVAAALAARDRAKAG 249 Query: 232 PLAPPEGLYFDSVEY 246 P APP+GL V Y Sbjct: 250 PTAPPDGLALTGVIY 264 >gi|50955536|ref|YP_062824.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] gi|62901288|sp|Q6AD25|TRUA_LEIXX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50952018|gb|AAT89719.1| tRNA pseudouridine synthase A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 288 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 19/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHAL 58 R+ + I Y G+ + GW RQ + ++QG++E+A+ + GE + AGRTD+GVHA Sbjct: 6 TRFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAGRTDAGVHAT 65 Query: 59 RQVAHFDLVREWV---------------PVILCKALNAYLKISDTISILNLSIVDKQFHA 103 QVAH DL E V L + +N L + + + F A Sbjct: 66 GQVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLGPVPDVLVSRATEAPAGFDA 125 Query: 104 RFSAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R Y YR+ R A L++ R +P +LD + M A ++G HDF ++ Sbjct: 126 RFSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGMLGLHDFASYCKAR 185 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 A++ ++ V A +F H+ +R+ VG+ VG+GK DL Sbjct: 186 EGATTIRTLQAFSWRRDAEGVLLGEVAADAFCHSMVRALVGACVEVGEGKLRPGDLVTLR 245 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 + R + P GL V Y Sbjct: 246 DERQRTSAFKVMPARGLTLREVGY 269 >gi|325972112|ref|YP_004248303.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] gi|324027350|gb|ADY14109.1| tRNA pseudouridine synthase A [Spirochaeta sp. Buddy] Length = 281 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 107/251 (42%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R M + Y+GS Y GWQ+Q N S+ IE+ + + E V V G+GRTDSGVHAL QV Sbjct: 19 RRIRMTVSYHGSHYSGWQKQSNAKSVAEIIEQTLKQILDEEVQVVGSGRTDSGVHALAQV 78 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ ALN L I IL+ D FHAR++ + R+Y Y Sbjct: 79 CHMDIANTRIKGEKFALALNRLL--PADIRILDSCETDGTFHARYTTMARTYRYYYKREC 136 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--- 177 A + + + E + A + G HDFTTF + S R I Sbjct: 137 DMTAFDDKLVAKVKQFPSLELLNEYACSIRGTHDFTTFTASGDLCPSRFRDIYESYWRLE 196 Query: 178 --NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 L+ + +FL+ +RS VGS+ + L ++DR G A Sbjct: 197 IDRFGKELLSYTICGNAFLYKMVRSLVGSMMEFATKDLPVEEFRHILASKDRSRSGRTAS 256 Query: 236 PEGLYFDSVEY 246 GLY + Y Sbjct: 257 ACGLYLYRISY 267 >gi|254430842|ref|ZP_05044545.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] gi|197625295|gb|EDY37854.1| tRNA pseudouridine synthase A [Cyanobium sp. PCC 7001] Length = 306 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 114/251 (45%), Gaps = 8/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 R + ++Y+G + GWQRQ N S+Q ++E AI ++ AGRTD+GVH Sbjct: 12 RRIALCLQYDGGAFHGWQRQHNAPSVQAALEDAIAILDPPAARPRPPRTWAAGRTDTGVH 71 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV HFD KALN L TI ++ S V +HA +SA R Y Y I Sbjct: 72 AAAQVVHFDSCGPIPAGRWPKALNGRL--PPTIRVMAASQVPPDWHACYSATYRRYRYTI 129 Query: 117 ITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +AP LD M A Q ++G HDF+ F+ + T+ Sbjct: 130 FNGRAPNLFLAPWSWHRYQYRLDENAMVQALQGMLGEHDFSAFQRTGSRRRHARTTLQDV 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + G+L+ + + A FL+ +R +G L VG+G+ + + + +DR AP Sbjct: 190 LLEREGDLLRVELQASGFLYGMVRLVLGQLVAVGEGRLSPEAFARRWRHRDRGAVKEAAP 249 Query: 236 PEGLYFDSVEY 246 P GL V Y Sbjct: 250 PHGLCLLRVGY 260 >gi|242371866|ref|ZP_04817440.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] gi|242350373|gb|EES41974.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W1] Length = 267 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L + I + ++ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PNDIYVKSVQTVDENFHCRYDCVGKRYRYKVYQGAH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RDPFKSGLETFIDNDLDLAKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 AGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRNPDEVPQLLEEKNRNNVPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|330685169|gb|EGG96833.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU121] Length = 267 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + IEY G+ + G+Q Q+ G ++Q EK + + + +H + RTD GVHA +Q Sbjct: 1 MRILVEIEYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHIRIHPSSRTDRGVHAYQQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD + A+N+ L D I + ++ VD+ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELQIENSKWQYAMNSAL--PDDIYVKSVQHVDEDFHCRYDCVGKRYRYKVYQAKH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I SLD M AA+ +G HDFT F S + S +RT+ ++ Sbjct: 119 RDPFQSGLKTYIADSLDLNQMNEAAKRFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK + ++ + L+ ++R + AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLIEVGKGKRSPEEIPQLLEEKNRNKIPFTAPSEGLYL 238 Query: 242 DSVE 245 + V Sbjct: 239 EKVY 242 >gi|314935862|ref|ZP_07843214.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] gi|313656427|gb|EFS20167.1| tRNA pseudouridine synthase A [Staphylococcus hominis subsp. hominis C80] Length = 267 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWIYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|228474552|ref|ZP_04059283.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] gi|228271215|gb|EEK12583.1| tRNA pseudouridine synthase A [Staphylococcus hominis SK119] Length = 267 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G G+ G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L + I + ++ VD FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIEPKQWKYAMNSAL--PEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I LD + M AA+H +G HDFT F S + S RT+ +V Sbjct: 119 RNPFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+A++R AP EGLY Sbjct: 179 EGFDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|158317762|ref|YP_001510270.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] gi|158113167|gb|ABW15364.1| tRNA pseudouridine synthase A [Frankia sp. EAN1pec] Length = 275 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 116/246 (47%), Gaps = 5/246 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA QV Sbjct: 9 RLRLDLAYDGTAFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAAGQV 68 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQ 120 AH D+ + L + LN L + + L+ F ARFSA+ R Y+YRI Sbjct: 69 AHVDIPDDTPVGGLARRLNGVL--DRAVRVKGLAPAPDGFDARFSALSRRYVYRITDAPY 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + P+ LD M AA L+G HDF F A++ RT+ DV+ Sbjct: 127 GADPLRRFDTLASPRPLDVPAMAEAALLLLGEHDFAAFCRRREGATTV-RTLLRLDVSRS 185 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++I V A +F H+ +R+ G+L VG+G+ + L R + P GL Sbjct: 186 RDVILADVEADAFCHSMVRALAGALVAVGEGRRRPEWVAAVLGRGMRDPAVTVLPAHGLT 245 Query: 241 FDSVEY 246 V Y Sbjct: 246 LVEVRY 251 >gi|256028207|ref|ZP_05442041.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289766139|ref|ZP_06525517.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] gi|289717694|gb|EFD81706.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11] Length = 245 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 109/246 (44%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L I + VD+ F+AR +A R Y+Y I Sbjct: 64 SNFYTSSTIPIEKYKYLLTRALSKDIDILS--VEEVDENFNARHNAKMREYIYII--SWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + +D + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVKYFG 179 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG+ + G+ ++ L R+ L EGLY Sbjct: 180 ESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIKLMLNDFTREYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKINY 245 >gi|57234742|ref|YP_181248.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] gi|57225190|gb|AAW40247.1| tRNA pseudouridine synthase A [Dehalococcoides ethenogenes 195] Length = 248 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 121/243 (49%), Gaps = 3/243 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 ++IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 2 LLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSY 61 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + LN YL I++ + V + F R AI R Y Y+I+ + Sbjct: 62 LSESSLGLDKIKGGLNFYL--PPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSP 119 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFGNL 183 L + +AW +P LD + M A + L G HDF F S + +R ++ + + Sbjct: 120 LARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLGIREDR 179 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A SFL Q+R+ +G+L +G G + ++ E +A+ GP AP GL Sbjct: 180 LIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVR 239 Query: 244 VEY 246 V Y Sbjct: 240 VNY 242 >gi|110598437|ref|ZP_01386709.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] gi|110339971|gb|EAT58474.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031] Length = 244 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M + +EY+G+ Y GWQRQ K ++QG IE A+ ++ E + + AGRTD GVHA Sbjct: 1 MKNIRITVEYDGTPYSGWQRQNRKGCVTVQGEIESALGMILQEKISLAAAGRTDKGVHAK 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q+A+F + +LNA L DTI I + + K+FH+R SA R Y Y +I Sbjct: 61 AQIANFSTASPMDLSRMVHSLNALL--PDTIRITDPLEMPKEFHSRHSARERHYRYFLIA 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + A+ + + D M+ A + G HDF+ F + + T+ Sbjct: 119 EPS--AIYGRFSGCSFGTPDLAVMQQVAGSVRGVHDFSAFSREDRDSPGRLCTVTACQWY 176 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPE 237 + + + + + A FL + +R V + G G ++ + ++ L+ + P+AP Sbjct: 177 RYQHFLVLSISANRFLRSMVRYLVDGMLRAGKGTLSAEEFKRMLETGVMTTQLNPVAPS- 235 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 236 GLFLWRVTY 244 >gi|225569151|ref|ZP_03778176.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] gi|225161950|gb|EEG74569.1| hypothetical protein CLOHYLEM_05231 [Clostridium hylemonae DSM 15053] Length = 246 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 124/247 (50%), Gaps = 4/247 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + + Y+GS Y GWQRQ ++IQ +E +I + G V V G+GRTD+GVHA Sbjct: 3 MRTYKLTVSYDGSRYQGWQRQATTDNTIQFVLEWSIGKLVGYRVHVDGSGRTDAGVHARG 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L + + P +LN YL + I I+ +V FHAR SA + Y Y I R Sbjct: 63 QVASVKLSKLYDPQEFKDSLNRYL--PEDIRIVKAELVKNGFHARKSAKGKKYEYYIDCR 120 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + P+ LD E MR A ++LVG +FT+F R + + S Sbjct: 121 EKPDVFSRRYCYHYPEKLDIEAMRNAVEYLVGVKNFTSFTDDKECRDPVRRIT-NIKIVS 179 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + I FL+ +R G+L +G GK S L + A+DR G LAP GL Sbjct: 180 TGDKVRITYYGTGFLYHMVRILTGTLLEIGTGKRDSAMLPVVIAAEDRSLAGFLAPARGL 239 Query: 240 YFDSVEY 246 + V Y Sbjct: 240 FLRKVYY 246 >gi|324999254|ref|ZP_08120366.1| tRNA pseudouridine synthase a [Pseudonocardia sp. P1] Length = 268 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 84/245 (34%), Gaps = 3/245 (1%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + I Y+G+ + GW Q ++QG + A+ V + + AGRTD+GVHA QVAH Sbjct: 2 RLDIAYDGTDFSGWATQPTRRTVQGVLTDALSTVLRTPLRLTVAGRTDAGVHASGQVAHV 61 Query: 65 DLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D+ + L + LN +L + Y + A Sbjct: 62 DVPAELDPQLDGLLRRLNRFLPPDVRVRATTRVPETFDARFSALRRHYRYRVTTASFGAE 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFG 181 + +A + + + +D Sbjct: 122 PLRARETVAWPHPLDPALMNAASALMVGEHDFAAFCKRREGATTVRALQRFEWDPAPGEP 181 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ V A +F H+ +RS VG++ VG + L R +APP GL Sbjct: 182 GVLVASVSADAFCHSMVRSLVGAVFEVGRVHRPPEWPAELLSRTSRASEVTVAPPHGLSL 241 Query: 242 DSVEY 246 V+Y Sbjct: 242 TGVDY 246 >gi|87300888|ref|ZP_01083730.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] gi|87284759|gb|EAQ76711.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 5701] Length = 316 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ + S+Q ++E+A+ + + AGRTDSGVHA Q Sbjct: 11 QRIALCLQYEGSSFCGWQRQPHQPSVQETLERALATLDPHRPIRAMAAGRTDSGVHAAGQ 70 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ ALN L +I + + V +HA FSA R Y Y + + Sbjct: 71 VVHFEASGPIPSERWAAALNGRL--PASIRVRAAAAVPSTWHACFSACYRRYRYTLYNGR 128 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P + L+ M A + L+G HDF+ F+ + + + Sbjct: 129 RPNLFLSPWSWHRYRQRLNERAMATALRGLLGFHDFSAFQRAGSRRPHARTKVQAVSLER 188 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R +G L VG+G+ + E+ + + R E AP GL Sbjct: 189 HGDLVVVEIQASGFLYGMVRLIMGQLVAVGEGQLSLAGFERRWRQRARSEVKEAAPAHGL 248 Query: 240 YFDSVEY 246 V Y Sbjct: 249 CLLRVGY 255 >gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2] Length = 263 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 24/246 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +++G I KA+ E A RTD GV AL V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNIRTVEGEIIKALNNSGIEYSDFKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + LNA L+ + IL+ V FH RF A + Y Y + + Sbjct: 61 VAITTEDEKALNPMV--LNARLE---DVWILSAIEVPPDFHPRFWAKSKVYRYYLPS--- 112 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD E ++ +Q +G HDF+ F IR+ID +V G Sbjct: 113 -------------IGLDVERVKECSQLFLGVHDFSAF--SKVDERDTIRSIDRIEVLVLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I + A+SFL +R V +L+L G GK ++ D+++ L+ + ++ + P APPEGL Sbjct: 158 PILVIEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLEGKFNKSKKVPPAPPEGLL 217 Query: 241 FDSVEY 246 V+Y Sbjct: 218 LVDVKY 223 >gi|320009073|gb|ADW03923.1| tRNA pseudouridine synthase A [Streptomyces flavogriseus ATCC 33331] Length = 284 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPAEVWAEHEEKLLRRMAGRLPLDVRIWRAAEAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + L + A L+ + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMTGEHDFAAYCKKREGATTIRTLQRLHWV 189 Query: 179 SFGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + V A +F H +R+ +G+ VGDG+ + + L A+ R + P Sbjct: 190 RDAESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAAKVRDPAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVAY 259 >gi|117927545|ref|YP_872096.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] gi|117648008|gb|ABK52110.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B] Length = 297 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 18/259 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ + G+ RQ ++Q +E+A+ +V E V AGRTD+GVHA Q Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 61 VAHFDLVRE-------------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 V H D+ + L LN L + + L+ A Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLPDDIAVHAVGLAPPGFDARFSALA 139 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R SY + L + P+ LD M A L+G HDF F A++ Sbjct: 140 RRYSYRVA---DRRWDPLRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAFCRRRENATT 196 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 R + + ++ +V A +F H+ +R+ VG++ VG G+ + L A+ R Sbjct: 197 IRRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAARAR 256 Query: 228 KECGPLAPPEGLYFDSVEY 246 + PP GL + V Y Sbjct: 257 DPAVTVVPPHGLTLEEVCY 275 >gi|269837096|ref|YP_003319324.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] gi|269786359|gb|ACZ38502.1| tRNA pseudouridine synthase A [Sphaerobacter thermophilus DSM 20745] Length = 271 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 108/256 (42%), Gaps = 15/256 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + + Y+GS +FG QRQ ++QG++E A + GE V AGRTD GVHA+ QVA Sbjct: 10 FRVDLGYDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQVAS 69 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + L +AL A D + + VD++FHARFSA R Y Y + P Sbjct: 70 LRIRWARSADELARALMAL--TPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPVPT 127 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRH-----------DFTTFRSIHCQASSPIRTI 172 + + A + R ++ + + + R + Sbjct: 128 LMRGRVWVVRTPLNLAAMNAAADAFIGRRDFAAVAGAGVGVPWSGIDTTRTVSLARWRIV 187 Query: 173 DHFDVNSFG--NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 D L+E R+ A FL +R+ VGSL VG G E+ L +DR+ Sbjct: 188 DQPFERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDRRRG 247 Query: 231 GPLAPPEGLYFDSVEY 246 AP +GL V Y Sbjct: 248 EAPAPAQGLVLWRVAY 263 >gi|223042638|ref|ZP_03612687.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] gi|222444301|gb|EEE50397.1| tRNA pseudouridine synthase A [Staphylococcus capitis SK14] Length = 267 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVQTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|325191328|emb|CCA26111.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 289 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 118/263 (44%), Gaps = 19/263 (7%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 II Y+G+ Y G+Q Q + ++Q +IE AIF TGE V + RTD GVHA QV Sbjct: 27 VKCIIAYDGTDYNGFQAQGKEGTITLQEAIEDAIFRTTGEAVRIRACSRTDRGVHARGQV 86 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARFSAIRRSYLYRIITRQ 120 FD + L ALN+ L + + + R +I + Y YRI++ Sbjct: 87 IVFDTLCTADAEKLRDALNSRLDDAIACLQVVPLSISSDRMDPRKLSIGKEYEYRIVSGG 146 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT----------------FRSIHCQ 164 E+ + W + + +D ++M+ AAQ L R F ++H Sbjct: 147 VRPVHERFQVWFVRQLVDIKSMKQAAQLLFHREKRDYASFSGERDDAKEGTDTFCTLHAL 206 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + + + I IR+ FL+ +R+ VG+L VG GK + + L A Sbjct: 207 DITMDQPRQEVMNHGQQSCIRIRMSGDRFLYKMVRNIVGTLVDVGLGKIDALSIPDILLA 266 Query: 225 QDRKECGPLAPPEGLYFDSVEYS 247 +DR++ G AP +GL V +S Sbjct: 267 RDRRQAGQGAPAKGLTLVRVYFS 289 >gi|239943606|ref|ZP_04695543.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|239990059|ref|ZP_04710723.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 11379] gi|291447073|ref|ZP_06586463.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] gi|291350020|gb|EFE76924.1| tRNA pseudouridine synthase A [Streptomyces roseosporus NRRL 15998] Length = 284 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L + + + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRVWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + L + A L+ + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDSMNEAAALMVGEHDFAAYCKKREGATTIRTLQKLSWV 189 Query: 179 SFGNLIEIR--VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + V A +F H +R+ +G+ VGDG+ ++ + L A+ R + P Sbjct: 190 RDEESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPASWPAEVLAAKVRDPGVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVAY 259 >gi|260495597|ref|ZP_05815722.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] gi|260196939|gb|EEW94461.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33] Length = 245 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 109/246 (44%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VDK F+AR +A + Y I Sbjct: 64 SNFYTSSTIPIEKYKYLLTRAL--PNDIDILSVEEVDKNFNARHNA--KMREYVYIISWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + +D + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYYKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIRKIYQIEVKYFG 179 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +FL +Q+R VG+ + G+ + L R+ L EGLY Sbjct: 180 ESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTREYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKINY 245 >gi|314934267|ref|ZP_07841626.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] gi|313652197|gb|EFS15960.1| tRNA pseudouridine synthase A [Staphylococcus caprae C87] Length = 267 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKRHVRIHPTSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N +L D I + N+ V++ FH R+ + + Y Y++ + Sbjct: 61 FHFDTELNIDNQQWQYAMNRFL--PDDIYVKNVHTVEENFHCRYDCVGKRYRYKVYQGEH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G I LD M AA H +G HDFT F S + S +RT+ +V Sbjct: 119 RNPFKSGLETFINSDLDLSKMNEAAHHFIGTHDFTGFCSQKTEVESKVRTLYQSEVVQTE 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++ + L+ ++R AP EGLY Sbjct: 179 TGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRQPDEVPQLLEEKNRNNVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|78211903|ref|YP_380682.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] gi|123743387|sp|Q3AMQ5|TRUA_SYNSC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78196362|gb|ABB34127.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9605] Length = 293 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y+GS + GWQRQ+NG S+Q +E AI + V AGRTD+GVHA Q Sbjct: 16 QRIALSLQYDGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 76 VVHFDCSGPIPARKWAPALNGRL--PSTIRVRESVARPLDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD MR A ++G HDF+ F + + T+ V Sbjct: 134 RPNLFLSPWSWHCYQHRLDESRMRDALSSMLGLHDFSAFMKAGSRRAHARTTVQEVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R + L VG+ + + E+ + + R E AP GL Sbjct: 194 QGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEAAPAAGL 253 Query: 240 YFDSVEYS 247 Y+ Sbjct: 254 CLLRAGYA 261 >gi|254302141|ref|ZP_04969499.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322333|gb|EDK87583.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 247 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 6 KNIKIEFRYDGSRYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A + Y I Sbjct: 66 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNA--KMREYVYIISWE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + E + +G HDF FR C + IR I +V FG Sbjct: 122 KNPFEARHCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTIREIYQIEVKYFG 181 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + I + +FL +Q+R VG++ + G+ ++ L R+ L EGLY Sbjct: 182 DSKIKIYIKGSAFLKSQVRIMVGTVLEIYYGRLPENHIKLMLNDFTREYKKNLVEAEGLY 241 Query: 241 FDSVEY 246 + ++Y Sbjct: 242 LNKIKY 247 >gi|307328060|ref|ZP_07607241.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] gi|306886365|gb|EFN17370.1| tRNA pseudouridine synthase A [Streptomyces violaceusniger Tu 4113] Length = 288 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q+ ++QG +E A+ VT E + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQRERRTVQGELESALRTVTRSSETFELTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + L + + ++ F+ARFSAI R Y YR+ Sbjct: 70 QVAHVDLPEALWAEHRDRLLRRLAGRLPHDVRVWKVAQAPPGFNARFSAIWRRYAYRVTD 129 Query: 119 RQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G LD M A++ L+G HDF + A++ V Sbjct: 130 HPGGVDPLLRGHVLWHDWPLDVAAMNAASERLLGEHDFAAYCKKRDGATTIRTLQRLDWV 189 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 +I V A +F H +RS VG+L VGDG K L A R + P Sbjct: 190 RGADGVITATVRADAFCHNMVRSLVGALLFVGDGHRPWDWPAKVLAAGVRDSAVHVVRPH 249 Query: 238 GLYFDSVEY 246 GL + V Y Sbjct: 250 GLTLEEVGY 258 >gi|73748346|ref|YP_307585.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|289432394|ref|YP_003462267.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] gi|73660062|emb|CAI82669.1| tRNA pseudouridine synthase A [Dehalococcoides sp. CBDB1] gi|288946114|gb|ADC73811.1| tRNA pseudouridine synthase A [Dehalococcoides sp. GT] Length = 246 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 120/242 (49%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-HCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L G HDF F S + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLDIVEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 323 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 279 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 280 PASPHGLCLVSVKY 293 >gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22] Length = 287 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 113/250 (45%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+GS + GW +Q G ++QG IE A+ VT GE + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDALRTVTRSGETYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL K L + + L F+ARFSAI R Y YR+ Sbjct: 70 GQVAHVDLPEAVWREHHEKLLKRLAGRLPRDVRVWALREAPSGFNARFSAIWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARLLLGEHDFAAYCKRREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++ V A +F H +RS +G+L VGDG + K L A R + P Sbjct: 190 VRGDDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRGADWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana] gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 323 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 42 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 101 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 102 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 159 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + P++TI FD Sbjct: 160 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 219 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 220 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 279 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 280 PASPHGLCLVSVKY 293 >gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638] gi|24638312|sp|Q8U2C1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM 3638] Length = 266 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 24/246 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + G+QRQ N +I+G I +A+ E A RTD GV A V Sbjct: 1 MRVALKIAYDGTKFHGFQRQPNVRTIEGEILRALKDAGIEFENFKSASRTDRGVSARGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + LN+ + + I ++ V + FH RF A + Y Y + + Sbjct: 61 IALSTEDDRIKNPMV--LNSRMS---DVWIWGIAEVPEDFHPRFWANTKVYRYYLPSL-- 113 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++ + M+ + +G HDF+ F IR+ID ++ Sbjct: 114 --------------GMNIKKMKECSLLFLGTHDFSAF--SRVDGRDTIRSIDRIEIWEKC 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 N++ + + +SFL +R V +L L G + + L + ++ P APPEGL Sbjct: 158 NVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEMLNGKFEKSRKVPPAPPEGLL 217 Query: 241 FDSVEY 246 ++Y Sbjct: 218 LWDIKY 223 >gi|323357344|ref|YP_004223740.1| pseudouridylate synthase [Microbacterium testaceum StLB037] gi|323273715|dbj|BAJ73860.1| pseudouridylate synthase [Microbacterium testaceum StLB037] Length = 285 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 16/261 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++QG +E+A+ + G + AGRTD+GVHA QV Sbjct: 1 MRLRLDISYDGTHFRGWARQPGLRTVQGVLEEALARILGGDPRLVVAGRTDAGVHASGQV 60 Query: 62 AHFDLVREWVPVILCK---------------ALNAYLKISDTISILNLSIVDKQFHARFS 106 AH DL + + + L +++ S + F ARFS Sbjct: 61 AHLDLDDAQQARLPRRRREGDEGDAVAALAGRVRGVLGAYPDVTVHRSSCAPEGFDARFS 120 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI QA LE+ R + SLD + M AAQ L+G HDF + +A Sbjct: 121 AVWRRYSYRIADAQAGYEPLERLRTTSVRASLDVDAMHAAAQRLIGLHDFAAYCKAREEA 180 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ +++ ++ V A +F H+ +R+ VG+ VG+G+ D+ K Sbjct: 181 TTIRTLLEYDWRRGDDGILIANVRADAFCHSMVRALVGACVAVGEGRLEVDDVIKIRDEG 240 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R + GL V Y Sbjct: 241 RRTADSKVLAARGLVLAEVGY 261 >gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] gi|210160151|gb|EEA91122.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279] Length = 281 Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 105/249 (42%), Gaps = 10/249 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + Y+G+G+ G+ Q + ++ G +A+ + + AGRTD+GVHA+ Q Sbjct: 26 FRLGYDGAGFSGFAEQPDVRTVAGEARRALETFLRRPIDMTCAGRTDAGVHAISQYVSVP 85 Query: 66 LVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 RE +A+ A L +S + + F ARF A R+Y YRI T A Sbjct: 86 AHREELAIEHRRWMRAMAALLPDDIALSGVYHA--APGFSARFDARSRTYTYRIATGDAR 143 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + W LD E M A HLV + + R + Sbjct: 144 PLLTRNVTWWHRLPLDVEAMEAGAVHLVGEHDFKSFCKMSSAVGKPTCRNVISVSFAREQ 203 Query: 182 NLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L E + +FLH+ +R+ VG+L VG G+ + + L A DR+ GP AP Sbjct: 204 ALGEDHLAFTITGNAFLHSMVRTIVGTLVEVGAGRRDPAWVVEVLAACDRRAAGPTAPAR 263 Query: 238 GLYFDSVEY 246 GL F V Y Sbjct: 264 GLCFMDVAY 272 >gi|147669126|ref|YP_001213944.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] gi|146270074|gb|ABQ17066.1| tRNA pseudouridine synthase A [Dehalococcoides sp. BAV1] Length = 246 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 115/242 (47%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTRYSGFQIQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 TESSLGLEKIKGGLNYYL--PPDIAVKEVHFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L + + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASGLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 +R+ A SFL Q+R+ +G L +G G + + +A+ GP AP GL V Sbjct: 179 ILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|119356907|ref|YP_911551.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] gi|166228693|sp|A1BFF0|TRUA_CHLPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119354256|gb|ABL65127.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266] Length = 258 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G+GY GWQRQ ++QG IE+ + + E + + GAGRTD GVHA Sbjct: 9 MKNIRITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARA 68 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q+A F P + ++NA L +TI I + +V + FHAR SA + YR R Sbjct: 69 QIATFKSRSSLGPDRMVHSMNALL--PNTIRISDPLVVPEGFHARHSA--KEREYRYFVR 124 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P A+ + SLD +M A +++G HDF+ F + + + Sbjct: 125 EEPSAVLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVFSKETRDRTGCLCRVISCKWFR 184 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +R+ A FL + +R + G G + + + +++ A P GL Sbjct: 185 QREFFVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGL 244 Query: 240 YFDSVEY 246 + + Y Sbjct: 245 FLWKITY 251 >gi|239929485|ref|ZP_04686438.1| tRNA pseudouridine synthase A [Streptomyces ghanaensis ATCC 14672] gi|291437810|ref|ZP_06577200.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] gi|291340705|gb|EFE67661.1| pseudouridylate synthase [Streptomyces ghanaensis ATCC 14672] Length = 284 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q G ++QG +E A+ VT G + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGAGFHGWAKQAGGRRTVQGEVEDALRTVTRSGTTYELTVAGRTDAGVHAR 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI- 116 QVAH DL K L + + L F ARFSA+ R Y YR+ Sbjct: 70 GQVAHVDLPAGVWAEHKGKLLKRLAGRLPKDVRVWALREAPAGFDARFSAVWRRYAYRVT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 DNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKRREGATTIRTLQELSL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++ V A +F H +RS +G+L VGDG K L A R + P Sbjct: 190 VRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPDWPGKVLAAGVRDSAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVGY 259 >gi|237736308|ref|ZP_04566789.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] gi|229421656|gb|EEO36703.1| tRNA pseudouridine synthase A [Fusobacterium mortiferum ATCC 9817] Length = 243 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS ++G+QRQ N ++QG IEK + +V + + + +GRTD GVHAL Q Sbjct: 1 MRNIKISYRYDGSMFYGFQRQPNKRTVQGEIEKLLNVVLKDEIDMVSSGRTDRGVHALIQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F L L L I +L++ VD +F++RF A +R Y Y I Sbjct: 61 VSNFYTTSTIPLDRLKYVLMRGL--PLDIELLDIEEVDIEFNSRFDAQKRGYTYII--SW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + K ++ E + LVG HDF FR C + + IR I +V Sbjct: 117 ERDPFKNRYETYVNKEIEAERFQKILDILVGVHDFNNFRMSDCGSKTSIREIYSIEVKKI 176 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + SFL +QIR +G+ + G S +E+ L+ D+K +A P GL Sbjct: 177 GSNRISVEILGSSFLKSQIRIIIGTALNIYFGNLPSNYMEEMLKNPDKKYLKKVAEPNGL 236 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 237 YLSKVDY 243 >gi|210615874|ref|ZP_03290836.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] gi|210150077|gb|EEA81086.1| hypothetical protein CLONEX_03055 [Clostridium nexile DSM 1787] Length = 247 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + IEY+GS Y GWQR ++ ++I I + I +T E + + RT+ GVHA Sbjct: 1 MRNIKLTIEYDGSRYQGWQRLGKDESTNTIANKITEVIKKMTNEDIELFCGSRTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q A F + + + LN YL I+I ++ ++FHA +A + Y+YRI Sbjct: 61 YGQAASFKTTTDMTLIEIQHYLNRYL--PMDIAITDIEEKPERFHASLNATSKIYMYRIS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + K D + M+ AA LVG+HDF F ++ + S ++ I DV Sbjct: 119 VSEVPSVFERKYVYHSFKRPDVDLMKQAAILLVGKHDFKKFSTVK-KNKSTVKEIYDIDV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G ++I + FLH R +G+L +G G D+E + A P+ Sbjct: 178 YDDGEELQITLHGNDFLHNMARMILGTLLDIGVGNRKKEDIELIFDSNSDVAASAPADPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVLY 246 >gi|329945764|ref|ZP_08293451.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] gi|328528212|gb|EGF55190.1| putative tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 170 str. F0386] Length = 308 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 80/275 (29%), Positives = 126/275 (45%), Gaps = 30/275 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 14 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLAVAGRTDAGVHAAAQ 73 Query: 61 VAHFDLVREWVPVILCK-----------------------ALNAYLKISDTISILNLSIV 97 V H D+ E + + +L + + + + IV Sbjct: 74 VVHLDVSPEAWAALPGRSDRLPEAALLTRMAGVLAREAQTSLPRTPRGAGDVVVTGARIV 133 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 + F ARF A+ R Y YRI AP + +P LD E M +A+ L+G HDF Sbjct: 134 PEAFDARFGALSRRYTYRIADADAPRNPARRATVLWLPDRLDVEAMEASAKPLLGEHDFL 193 Query: 157 TFRSIHCQASSPIRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 ++ A++ IRT+ + L+ + VVA +F H+ +RS VG+ VG G Sbjct: 194 SYCKPRQGATT-IRTLRALEWRRVAAGPDAGLVTLSVVADAFCHSMVRSLVGAGLAVGQG 252 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + ++ L A+ R P+APP GL + V Y Sbjct: 253 RRPAAWPDELLAARSRDGAAPVAPPHGLTLEEVVY 287 >gi|325479638|gb|EGC82730.1| tRNA pseudouridine synthase A [Anaerococcus prevotii ACS-065-V-Col13] Length = 246 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 109/246 (44%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+G+ + G+Q QK+ S++ + KAI VTGE + GRTDSGVHA Sbjct: 3 KNILLETSYDGALFSGFQYQKDQRSVEEELTKAIRKVTGEENRIVSCGRTDSGVHAKSHF 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + P+ + + +L D I ++ VD FHARFSA + Y Y I + Sbjct: 63 VNFLTASDINPIGIKFQIQPHL--PDDILAISSREVDLNFHARFSAKSKLYKYVICRSKD 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + LD + + LV + + +RTI+ Sbjct: 121 MHPIYRNYKEHVTYKLDLKKLEEGLNLLVGTHDFRLFMMEDKNLSINTVRTIEEAYFIEN 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G +EI SFLH Q+R VGSL + G+ + D EK ++ K P EGLY Sbjct: 181 GADLEIYFKGESFLHNQVRIMVGSLIELARGRISLDDYEKFFDKENTKRANPALGAEGLY 240 Query: 241 FDSVEY 246 VE+ Sbjct: 241 LWRVEF 246 >gi|213418519|ref|ZP_03351585.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 2/222 (0%) Query: 25 SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK 84 S+Q +EKA+ V E + V AGRTD+GVH QV HF+ +NA L Sbjct: 2 RSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL- 60 Query: 85 ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRI 144 I++ + V FHARFSA R Y Y I + A+ + LD E M Sbjct: 61 -PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHR 119 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGS Sbjct: 120 AAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGS 179 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L VG + + + L A+DR A EGLY +V+Y Sbjct: 180 LLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 221 >gi|256420466|ref|YP_003121119.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] gi|256035374|gb|ACU58918.1| tRNA pseudouridine synthase A [Chitinophaga pinensis DSM 2588] Length = 250 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y G+ + G+Q Q N ++Q I+ AI + +V G+ RTD+GVHA + Sbjct: 1 MRYFIEVAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD+ + P L K +NA L + + N+ V H+RF+A+ RSY Y + + Sbjct: 61 LHFDMEQPLHPQFLYK-VNAIL--PPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEKD 117 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P ++G + E + AA L +F TF + Q + I + Sbjct: 118 PFMRDRGYFFPYTLHP--ELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGE 175 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I RV A FL +R VG++ VG GK T +A+++++ PP+GL+ Sbjct: 176 DRIVYRVTANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFL 235 Query: 242 DSVEY 246 V Y Sbjct: 236 MKVAY 240 >gi|237743728|ref|ZP_04574209.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] gi|229432759|gb|EEO42971.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 75/246 (30%), Positives = 110/246 (44%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GSGY+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSGYYGFQRQPNKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A + Y I Sbjct: 64 SNFYTSSTIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNA--KMREYVYIISWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + +D + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLNDCVSKVTIREIYQIEVKYFG 179 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG + G+ + L R+ L EGLY Sbjct: 180 ESKIKIYIKGSAFLKSQVRIMVGIALEIYYGRLPENHIRLMLNDFTREYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKINY 245 >gi|196233677|ref|ZP_03132518.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] gi|196222347|gb|EDY16876.1| tRNA pseudouridine synthase A [Chthoniobacter flavus Ellin428] Length = 251 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R M+I Y+G + GWQ Q ++Q +E A G VVVHG+GRTD+GVHAL Q+A Sbjct: 6 RLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQIA 65 Query: 63 HFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ + V + ALN +L I +L +S FHARF A + Y YR+ Sbjct: 66 HADVPAARLEVSAWRGALNNFL--PPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASY 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---RSIHCQASSPIRTIDHFDVN 178 LE GRAW +P LD + +R AQ L G+HDF F R+ A +RTI H + Sbjct: 124 LHPLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHICLT 183 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+L+ +R FL+ +R G+L G+ T +++ L + K+ AP EG Sbjct: 184 RRGDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAEG 243 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 244 LYLTRVLY 251 >gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 302 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A+ + + + AGRTD+GVHA QV Sbjct: 27 VRLRLDIAYDGTEFAGWATQAGQRTVAGVLDEALTTLFRAPMRLRAAGRTDTGVHATGQV 86 Query: 62 AHFDLVREWVPVILCKA--------------LNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P +A L +L + + + Sbjct: 87 AHVDVPPDALPNAYPRAPRVGEPEFLPLVRRLGRFLPTDVRVLGIARAPAGFDARFSALR 146 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 +Y P+ LD + M A++ LVG HDF F A++ Sbjct: 147 RHYTYRLSTAPYGVEPQR-ARYVTAWPRPLDVDAMAAASRDLVGLHDFAGFCRHRPNATT 205 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D + G LI V A +F + +RS VG+L VG+ + + L A R Sbjct: 206 -IRDLQGLDWSRDGELITAHVTADAFCWSMVRSLVGALLAVGEHRRPVSWCRGLLTATSR 264 Query: 228 KECGPLAPPEGLYFDSVEY 246 APP GL V+Y Sbjct: 265 SSDFAAAPPHGLTLVGVDY 283 >gi|210617714|ref|ZP_03291708.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] gi|210149156|gb|EEA80165.1| hypothetical protein CLONEX_03932 [Clostridium nexile DSM 1787] Length = 249 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y MII Y+GS Y GWQRQ +IQ +E+ + + G V + G+GRTD+GVHA Sbjct: 1 MRNYKMIIVYDGSRYKGWQRQNLTNLTIQTILERTVEQIVGYPVEIDGSGRTDAGVHANG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+ + + + LN L + I + + +V FH+R+SA + Y Y I TR Sbjct: 61 QVANMKVSGLLDESFVGE-LNCLL--PEDICVKEMELVPGSFHSRYSAKAKKYKYCIDTR 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P + + K L ++M+ AA++L G HDF+ F + S +RTI + Sbjct: 118 KKPCVFTRRYTYHFTKELHLDDMKKAAEYLKGTHDFSAFTDNKDE-KSKVRTIYEIKIVK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +E FL+ +R G+L VG + + D++ AL+ ++R+ G LAP GL Sbjct: 177 KWTRLEFEFYGTGFLYHMVRILTGTLLEVGCAEKSIEDIKMALEQKERELTGFLAPARGL 236 Query: 240 YFDSVEY 246 + + V Y Sbjct: 237 FLEKVYY 243 >gi|270307870|ref|YP_003329928.1| pseudouridylate synthase [Dehalococcoides sp. VS] gi|270153762|gb|ACZ61600.1| pseudouridylate synthase [Dehalococcoides sp. VS] Length = 246 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 3/242 (1%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 M+IEY G+ Y G+Q Q G++IQG +E AI +T E V G+GRTD+GVHA QV + Sbjct: 1 MVIEYEGTMYSGFQIQDKGATIQGELETAIQKLTNEKTRVSGSGRTDAGVHAAYQVVSYL 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN YL I++ + V + F R AI R Y Y I+ + L Sbjct: 61 SESSLGLEKIKGGLNYYL--PTDIAVKEVYFVAENFDVRRRAISREYSYHILNSKTRSPL 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 + +AW +P LD + M A + L S+ + +R ++ ++ + + Sbjct: 119 ARLQAWQVPYKLDTKLMEQAFKMLEGEHDFVAFASSLGPEIKKTVRRVNWTRLDIAEDRL 178 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A SFL Q+R+ +G+L +G G + + +A+ GP AP GL V Sbjct: 179 VFRIEANSFLTHQVRNTIGTLVELGRGILSMREFGALFEAKTPGLAGPAAPACGLSLVRV 238 Query: 245 EY 246 Y Sbjct: 239 NY 240 >gi|239980027|ref|ZP_04702551.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 295 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 107/251 (42%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 +R + + Y+G + GW +Q ++QG IE A+ VT + AGRTDSGVHA Sbjct: 19 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTVAGRTDSGVHA 78 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L + I ++ F ARFSA+ R Y YR+ Sbjct: 79 RGQVAHVDLPAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAVWRRYAYRV 138 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G +LD E M A+ L+G HDF + A++ + Sbjct: 139 TDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAYCKRREGATTIRTLQELS 198 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H +RS VG+L VGDG K L A R + Sbjct: 199 WERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGVRDSAVHVVR 258 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 259 PHGLTLEEVGY 269 >gi|197294307|ref|YP_001798848.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] gi|171853634|emb|CAM11505.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma australiense] Length = 245 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y G+Q+Q +IQ ++E A+ +T + A RTD GVHA Q H Sbjct: 8 YKLILSYDGTCYCGYQKQPQTKTIQQTLENALKSMTKRQINTFAASRTDKGVHAQEQTIH 67 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F LN L I I + FHAR+ A +S +Y I + PL Sbjct: 68 FQTAFAIELKRFKNTLNRIL--PPDIRIKKIEKATADFHARYWA--KSKIYHYIFAKKPL 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + +LD ++ A ++G+++F +F + + + +T+ + V Sbjct: 124 NAFNYHFQVFVANLDFAKIKSAMNLIIGKYNFASFTNDK-KEKNFNKTVLNAFVKETSQN 182 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + A FL +R VG L +G K + + L ++ LAP +GL+ Sbjct: 183 YILIFHADGFLKYMVRFLVGGLIEIGKNKMSLELFKAMLTNTTNQKVSLLAPAKGLFLKK 242 Query: 244 VEY 246 + Y Sbjct: 243 IFY 245 >gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 298 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 12/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALR 59 ++ ++I Y+G+ + GWQ Q++ +IQ +EKA+ +T + + + GAGRTD+GVHA Sbjct: 17 KWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAWG 76 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + LS +FHARFSA + Y Y+I Sbjct: 77 QVAHFVTPFNYTSLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSASSKVYRYQIYN 134 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFD 176 ++ A+ L+ MR AA VG+HDF+ F + P++TI FD Sbjct: 135 DTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFD 194 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---- 232 V G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ Sbjct: 195 VIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSL 254 Query: 233 LAPPEGLYFDSVEY 246 A P GL SV+Y Sbjct: 255 PASPHGLCLVSVKY 268 >gi|120603116|ref|YP_967516.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] gi|166228695|sp|A1VF73|TRUA_DESVV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|120563345|gb|ABM29089.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris DP4] Length = 297 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 117/290 (40%), Gaps = 46/290 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA L D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLDVDWQKAINAQL--PDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + + LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAI 178 Query: 176 DVNSFGNLI---------------------------------------EIRVVARSFLHT 196 G L FL Sbjct: 179 RRCPSGTLPAGALLTYGEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQ 238 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 239 MVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYY 288 >gi|297736816|emb|CBI26017.3| unnamed protein product [Vitis vinifera] Length = 326 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 46 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 105 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 106 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 163 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--RTIDHFD 176 + + L+ MR AA+H G+HDF+ F + SP + I FD Sbjct: 164 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 223 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 224 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 283 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 284 APPHGLCLMSVKYN 297 >gi|225432191|ref|XP_002275097.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 336 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 85/254 (33%), Positives = 124/254 (48%), Gaps = 11/254 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ ++I Y G+ Y GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA Sbjct: 56 KWRLVIAYEGTRYSGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWG 115 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + ALN L I + +S +FHARFS + Y Y+I Sbjct: 116 QVAHFLTPFNYDGLESIHAALNGLL--PPDIRVREISPAVPEFHARFSVKSKIYHYKIYN 173 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--RTIDHFD 176 + + L+ MR AA+H G+HDF+ F + SP + I FD Sbjct: 174 DAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFD 233 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 VN G L+++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 234 VNEMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 293 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 294 APPHGLCLMSVKYN 307 >gi|302558965|ref|ZP_07311307.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] gi|302476583|gb|EFL39676.1| tRNA pseudouridine synthase A [Streptomyces griseoflavus Tu4000] Length = 285 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 114/251 (45%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHA 57 +R + + Y+G+ + GW RQ G ++QG IE A+ VT G + + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGAEFSGWARQAGGRRTVQGEIEDALRTVTRSGGTVYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL RE K L + + L F+ARFSA+ R Y YR+ Sbjct: 70 RGQVAHVDLPREVWAEHHTKLLKRLAGRLPRDVRVWALREAPAGFNARFSAVWRRYAYRV 129 Query: 117 -ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G LD + M AA+ L+G HDF + A++ + Sbjct: 130 TDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKRREGATTIRTLQELS 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + ++ V A +F H +RS +G+L VGDG + L A R + Sbjct: 190 LLRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDGHRPPHWPAEVLAAGVRDSAVHVVR 249 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 250 PHGLTLEEVGY 260 >gi|46579324|ref|YP_010132.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|51316681|sp|Q72DL8|TRUA_DESVH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|46448738|gb|AAS95391.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris str. Hildenborough] gi|311233151|gb|ADP86005.1| tRNA pseudouridine synthase A [Desulfovibrio vulgaris RCH1] Length = 297 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 83/290 (28%), Positives = 117/290 (40%), Gaps = 46/290 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M R + I Y G+ GWQ Q++ ++QG +E + + GE V +H AGRTD+GV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HA QVAH D+ + V KA+NA L D I IL++ FHARF A+ + Y YR Sbjct: 61 HADGQVAHVDIPDHKLGVDWQKAINAQL--PDDICILDVRRAADDFHARFDALGKRYTYR 118 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + + LD M AA+HL G HDF F++ +S +RT+ Sbjct: 119 LWLTRRFIPPKLHGQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAI 178 Query: 176 DVNSFGNLI---------------------------------------EIRVVARSFLHT 196 G L FL Sbjct: 179 RRCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQ 238 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R+ +G L VG G + D+ + DR AP GL V Y Sbjct: 239 MVRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYY 288 >gi|319442992|ref|ZP_07992148.1| tRNA pseudouridine synthase A [Corynebacterium variabile DSM 44702] Length = 283 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 14/260 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M+R + + Y+G+ + GW RQK ++QG +E+ + LV V + AGRTD+GVH Sbjct: 4 MVRVRLDVAYDGTDFHGWARQKGPQEALRTVQGVLEEKLSLVFRTPVELTVAGRTDAGVH 63 Query: 57 ALRQVAHFDLVRE-------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 A QVAH D+ P L + L+ L + + + Sbjct: 64 ATGQVAHVDVPASAFGQRSLEQPSDLVRRLSRMLPADVRLHGASAAAPGFDARFSALRRH 123 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y + A + + + + Sbjct: 124 YVYRVTTSMAGPSPLRVRDTAQWRHSVDLSAVQLASDVLVGLHDFAAFCKYREGSTTVRE 183 Query: 170 RTIDHFDVNSFGNLIEIR---VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + S E VVA +F + +RS VG++ VG+G+ LQ + Sbjct: 184 LQSFEWRDISTPTEPETYEASVVADAFCWSMVRSLVGAVLTVGEGRRDEGFASCLLQERS 243 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R P+AP GL +V+Y Sbjct: 244 RSSKVPVAPACGLNLVAVDY 263 >gi|291451884|ref|ZP_06591274.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] gi|291354833|gb|EFE81735.1| tRNA pseudouridine synthase A [Streptomyces albus J1074] Length = 287 Score = 150 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 107/251 (42%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 +R + + Y+G + GW +Q ++QG IE A+ VT + AGRTDSGVHA Sbjct: 11 VRVRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRTVTRSGERTYELTVAGRTDSGVHA 70 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL K L + I ++ F ARFSA+ R Y YR+ Sbjct: 71 RGQVAHVDLPAAVWEEHREKLLRRLAGRLPHDVRIWRVAEAPAGFDARFSAVWRRYAYRV 130 Query: 117 ITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L +G +LD E M A+ L+G HDF + A++ + Sbjct: 131 TDHPGGVDPLLRGHVLWHDWTLDVEAMNAASVALLGEHDFAAYCKRREGATTIRTLQELS 190 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ V A +F H +RS VG+L VGDG K L A R + Sbjct: 191 WERDRDGIVTATVRADAFCHNMVRSLVGALLFVGDGHRPVEWPGKVLAAGVRDSAVHVVR 250 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 251 PHGLTLEEVGY 261 >gi|317505831|ref|ZP_07963676.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] gi|316255913|gb|EFV15138.1| tRNA pseudouridine synthase [Segniliparus rugosus ATCC BAA-974] Length = 293 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 81/251 (32%), Positives = 116/251 (46%), Gaps = 9/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW RQ ++ G+IE A+ + + AGRTDSGVHA QV Sbjct: 21 VRLRLDIAYDGTEFSGWARQPGRRTVAGTIEAALGRLFQAPAQLTVAGRTDSGVHATGQV 80 Query: 62 AHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH D+ E P L + L L + +L V KQF ARFSA+RR Y Y+I Sbjct: 81 AHVDVSAELVSGRLPPDKLVRKLARML--PSDVRVLAAREVSKQFDARFSALRRHYRYQI 138 Query: 117 IT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + LD + A+ LVG HDF F +++ IR + F Sbjct: 139 TRAPHGADPLRAREVVPWGRPLDLGLLNAASAALVGLHDFAAFCRPRPGSTT-IRELQRF 197 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D G L+ R+ A +F + RS +G++ V +G+ L A R +AP Sbjct: 198 DWTEDGPLLTARISADAFCWSMCRSLIGAVTAVAEGRREPGWAAALLTAPSRSSEIAVAP 257 Query: 236 PEGLYFDSVEY 246 GL V+Y Sbjct: 258 GHGLCLTGVDY 268 >gi|227501274|ref|ZP_03931323.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] gi|227216507|gb|EEI81913.1| tRNA-pseudouridine synthase I [Anaerococcus tetradius ATCC 35098] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ + G+Q QK+ S++ I+KA+ VTGE + GRTDSGVHA Sbjct: 1 MIRNVLVETAYDGTNFAGFQYQKDQRSVEEEIKKALVKVTGEDNRIVSCGRTDSGVHAKS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F + P L +L I L+ VD FHARFS + Y Y I Sbjct: 61 HFFNFLTASKIDPKAFSYHLQVHL--PADILALSSREVDLSFHARFSCKSKLYKYVIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + I LD + + + L + R + + +R ID Sbjct: 119 KGMHPIYRNYKEEISYKLDLKRLEEGLKLLCGEHDFRSFMREDKDLSINTVRKIDQAYFL 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ +EI A SFLH Q+R VGSL + GK + D ++ + P +G Sbjct: 179 ENGDDLEIYFKAESFLHNQVRIMVGSLVELSRGKLSLDDYKRFFDEDYKIRANPALGAQG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLWRVEF 246 >gi|282860840|ref|ZP_06269906.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] gi|282564576|gb|EFB70112.1| tRNA pseudouridine synthase A [Streptomyces sp. ACTE] Length = 284 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 106/250 (42%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTGRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL E K L + I F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPVEVWAEHREKLLRRMAGRLPLDVRIWRAEEAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQ-APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFD 176 R L +G + LD + M AA + + + H+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAARMTGEHDFAAYCKKREGATTIRTLQKLHWV 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ++ V A +F H +R+ +G+ VGDG+ + + L A+ R + P Sbjct: 190 RDGESGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAGWPAEVLAARVRDPAVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVAY 259 >gi|317051440|ref|YP_004112556.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] gi|316946524|gb|ADU66000.1| tRNA pseudouridine synthase A [Desulfurispirillum indicum S5] Length = 263 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R + + Y+G+ Y GWQ Q+N ++IQ +E A V + +HG+GRTD+GVHA Q Sbjct: 8 RRIALKVAYDGTHYHGWQTQENAANTIQAILEHAAGSVCNHPLYIHGSGRTDTGVHARGQ 67 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + H + +N+ L I + N VD+ FH+++S + Y Y I+ Sbjct: 68 ICHLTTTSTIPLFKIIMGMNSML--PRDIRVRNAFDVDEDFHSQYSTHSKKYSYAILHGC 125 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L++ +W + +++D ++ H VG HDF R+ + +RTI V Sbjct: 126 QPDPLQRLYSWHVRQTIDPARLQEELNHFVGEHDFKACRAKKATTKTTVRTIYSIGVRVE 185 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I FL IR VG+ G + + + L ++DR G A P GL Sbjct: 186 SPHKLHIHFHGNGFLKHMIRIMVGTAVDRAIGCLDRS-IPEILLSRDRTRGGRTAAPCGL 244 Query: 240 YFDSVEY 246 + V Y Sbjct: 245 VMEEVLY 251 >gi|33864024|ref|NP_895584.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] gi|42559756|sp|Q7TUP1|TRUA_PROMM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33635608|emb|CAE21932.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9313] Length = 295 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ S+Q +E AI + + + AGRTD+GVHA Q Sbjct: 16 RRIGLSVQYEGSNFCGWQRQPQAVSVQQVLEDAISQLDPQRPIQAVAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA SAI R Y Y I + Sbjct: 76 VVHFDCCGPIPAERWAPALNGRL--PSTIRVREAVARPASWHACHSAIYRRYRYTIYNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD M+IA + L+G DF+ F+ + + TI + Sbjct: 134 RPNLFLTPWSWHRYQVRLDETMMQIALEGLLGLQDFSAFQRTGSRRAHARTTIQEVKIER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP +GL Sbjct: 194 QGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLETFERRWKEKRRQEVKEAAPAQGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|168028382|ref|XP_001766707.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682139|gb|EDQ68560.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 60/305 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G+QRQK ++QG +E A G+ V+ + RTD+GVHAL Sbjct: 10 QRYLITVEYIGTRFLGFQRQKGKRTVQGCLESAFEKFIGQPVISAVSSRTDTGVHALANT 69 Query: 62 AHFDLVRE-----------WVPVILCKALNAYLKISDTISILN---LSIVDKQFHARFSA 107 H D+ R+ P ++ A+N +L + + V FHAR+ A Sbjct: 70 CHVDVERKSKRKPGEVMPPHEPRVVQTAINHFLHAQKDAGDMAVVGVQCVSPDFHARYRA 129 Query: 108 IRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R+Y YR++T + +K +AW + + L+ +M A + LVG HDF++FR+ CQA+ Sbjct: 130 QERTYHYRVLTGNRQMSVFQKDQAWHVSEELNLTSMMEACKVLVGHHDFSSFRATGCQAN 189 Query: 167 SPIRTIDHFDVNSFGNLIEIRV-------------------------------------- 188 SPIRT+D V Sbjct: 190 SPIRTLDELHVCEMPAWPCFPSPEERQQSSQNAETKDLESTTSELKDPILTSKLGTSEKL 249 Query: 189 -------VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ARSFL+ Q+R VG+LK VG G T D+++ L A+ + +AP GLY Sbjct: 250 RCFVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTITQAPAMAPACGLYL 309 Query: 242 DSVEY 246 +V+Y Sbjct: 310 ANVKY 314 >gi|296119322|ref|ZP_06837890.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] gi|295967714|gb|EFG80971.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM 20306] Length = 297 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 123/257 (47%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R I Y+G+ + GW QK ++QG +E+ + ++ + + AGRTD+GVHA Q Sbjct: 15 VRLRFDIAYDGTDFHGWASQKGQLRTVQGVLEQCLTMILRHPIELTVAGRTDAGVHAAGQ 74 Query: 61 VAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRSYLY 114 VAH D+ E + A L D I I ++S + F ARFSA+RR Y+Y Sbjct: 75 VAHADVPVESLQQRSIDGEPAKLVRRLAKLVDDDIRIHSVSFAPEGFDARFSALRRHYVY 134 Query: 115 RIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 RI T +A + R + +D + M+ AA LVG HDF F A++ + Sbjct: 135 RITTEEAGALPTRLRDTATWTRPVDIDLMQQAATTLVGLHDFAAFCKAKPHATTIRDLQE 194 Query: 174 HFD----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + S NL E V A +F + +RS VG VG+G+ +E L +R Sbjct: 195 FYWVDASTPSEPNLYEAHVSADAFCWSMVRSLVGCCLAVGEGRRDINFVEAMLGESERSS 254 Query: 230 CGPLAPPEGLYFDSVEY 246 P+A +GL V+Y Sbjct: 255 SIPVAAAKGLSLVGVDY 271 >gi|326777220|ref|ZP_08236485.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] gi|326657553|gb|EGE42399.1| tRNA pseudouridine synthase A [Streptomyces cf. griseus XylebKG-1] Length = 284 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLV--GRHDFTTFRSIHCQASSPIRTIDHFD 176 R + L + A L+ + + + Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKREGATTIRTLQKLRWV 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + L+ V A +F H +R+ +G+ VGDG+ + + L A+ R + P Sbjct: 190 RDPATGLLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVAY 259 >gi|309812385|ref|ZP_07706140.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] gi|308433690|gb|EFP57567.1| tRNA pseudouridine synthase A [Dermacoccus sp. Ellin185] Length = 282 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 13/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQ 60 +R+ + Y+G+ + GW RQ +++ + A+ V E V + AGRTD+GVHA Sbjct: 1 MRFRIDFAYDGTDFSGWARQPGRRTVEEELTGALTRVLRREDVRLTVAGRTDAGVHARGG 60 Query: 61 VAHFDLVREWVPVILCK-----------ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 V H D+ + + + LN L + + R Sbjct: 61 VCHGDIDADAWAALPGRSERAPAQALVTRLNGVLAGDVVVKAASEQPASFDARFSALKRR 120 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 SY + L + ++ ++LD + M A+ L+G HDF + A++ Sbjct: 121 YSYRL-LDDAARLDPLRRRDTVVVKRTLDVDAMNAASALLIGLHDFAAYCKPREGATTIR 179 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +D+ ++ R+ A +F H+ +R+ +G + VG+G+ + L A R Sbjct: 180 TLLDYAWTREADGVLTARLEADAFCHSMVRALIGGVVPVGEGRRPIDWPAQVLTAGRRDP 239 Query: 230 CGPLAPPEGLYFDSVEY 246 + PP GL + V Y Sbjct: 240 GVVVMPPHGLCLEEVSY 256 >gi|187734897|ref|YP_001877009.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] gi|238691867|sp|B2UNB6|TRUA_AKKM8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|187424949|gb|ACD04228.1| tRNA pseudouridine synthase A [Akkermansia muciniphila ATCC BAA-835] Length = 265 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 80/255 (31%), Positives = 107/255 (41%), Gaps = 11/255 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R Y+G Y GWQ Q G ++Q +E+A + G +HG+GRTD+GVHAL Q Sbjct: 1 MTRIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQ 60 Query: 61 VAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V H D ALN L TI I + V FHARFSA ++Y Y I Sbjct: 61 VFHADAPDTHRIPADKWPAALNTRL--PRTIRITHAEYVPPGFHARFSATGKTYRYCISR 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------SPIRTI 172 + G AW P + + + A G HDFT F ++ RTI Sbjct: 119 APILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRRTI 178 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECG 231 V G + I FL+ +R G+ GK T +L + + A + Sbjct: 179 TQTQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDKSP 238 Query: 232 PLAPPEGLYFDSVEY 246 APP+GL V Y Sbjct: 239 FCAPPDGLTLMRVHY 253 >gi|171910331|ref|ZP_02925801.1| putative tRNA pseudouridylate synthase I [Verrucomicrobium spinosum DSM 4136] Length = 258 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 80/257 (31%), Positives = 116/257 (45%), Gaps = 13/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G + GWQ Q N ++Q +E A+ +TG V V G+GRTD+GVHAL QV Sbjct: 4 RRLKLTIAYDGRPWRGWQSQANSVTVQDQVETALRDLTGTQVNVQGSGRTDAGVHALAQV 63 Query: 62 AHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D+ + +ALN L S + + +FHARF A+ + Y YR+ Sbjct: 64 AHADVPDALKMGREAWVRALNVRLPQSIRVMDCEDA--AGEFHARFDAVGKIYCYRLWRG 121 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPIR 170 E+GRAW + +LD + + A L G H+F A + R Sbjct: 122 DVMSPFEQGRAWHVYGALDLDLLHHGAGILTGTHNFARLSANRGGMSEDERREDAEALTR 181 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T+ D+ G +I I FL+ +R GSL V G+ L + + Sbjct: 182 TVRRIDIIPEGEVIRIEFEGDGFLYKMVRLMTGSLVQVARGRERLEWLSDLVGDPSGLKS 241 Query: 231 GPLAPPEGLYFDSVEYS 247 AP +GLY V Y+ Sbjct: 242 NQCAPADGLYLVKVFYA 258 >gi|310777852|ref|YP_003966185.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] gi|309747175|gb|ADO81837.1| tRNA pseudouridine synthase A [Ilyobacter polytropus DSM 2926] Length = 243 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 120/247 (48%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + EY+GSG+FG+QRQ + ++QG IE A+ +V E + + +GRTD GVHA Q Sbjct: 1 MKNIKIEYEYDGSGFFGFQRQPSARTVQGEIESALKVVLKEEINLASSGRTDRGVHAYMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + L A+ I + I I ++ V ++FHARFSA R+Y Y + Sbjct: 61 VSNFFTSSKIPLDRLEFAVKNL--IPEDIKIHSMKNVSEEFHARFSAKSRAYEYIM--GW 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A E I +D E + + +VGRH+F FR C +P+R I Sbjct: 117 DRTAFETKYVSGIKGKVDPEKLYKILEPIVGRHNFEGFRLTDCSGKNPVRDISEIRCYPK 176 Query: 181 GNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + +FL +QIR +G+ V K L L+ D K+ +A GL Sbjct: 177 GENKLAVYIKGNAFLKSQIRIIMGTALAVYFEKRPKNYLINKLKNPDSKDEKIVADGSGL 236 Query: 240 YFDSVEY 246 Y +EY Sbjct: 237 YLCDIEY 243 >gi|259506738|ref|ZP_05749638.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|42559821|sp|Q8FS31|TRUA_COREF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|259165679|gb|EEW50233.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 282 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 122/258 (47%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 1 MRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAHFD+ RE + L + I + ++ + F ARFSA+RR Y+ Sbjct: 61 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLLPEDIRVHGVNYAPEGFDARFSALRRHYV 120 Query: 114 YRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ----ASSP 168 YRI T A + R PK +D + M+ AA L+G HDF F Sbjct: 121 YRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKPNASTVRELQ 180 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T + L E VVA +F + +RS VGS VG+G+ + L A +R Sbjct: 181 EFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTATERS 240 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 241 PDVPVAPAKGLSLVGVDY 258 >gi|315104023|gb|EFT75999.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA2] Length = 279 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L ++ + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDIVVTSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLA---LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LDC N + + P+ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCKHREGATTIRPLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|182436598|ref|YP_001824317.1| tRNA pseudouridine synthase A [Streptomyces griseus subsp. griseus NBRC 13350] gi|238689026|sp|B1W3X8|TRUA_STRGG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|178465114|dbj|BAG19634.1| putative pseudouridine synthase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 284 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 5/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G + GW +Q + ++QG IE A+ VT V + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGRTDAGVHARG 69 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L + I + F+ARFSA+ R Y YR+ Sbjct: 70 QVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALWRRYAYRVGD 129 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 R + L + A L+ + ++ IRT+ Sbjct: 130 RPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKREGATTIRTLQKLRWV 189 Query: 179 SFGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + V A +F H +R+ +G+ VGDG+ + + L A+ R + P Sbjct: 190 RDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKVRDPGVHVVRP 249 Query: 237 EGLYFDSVEY 246 GL + V Y Sbjct: 250 HGLTLEEVAY 259 >gi|300088167|ref|YP_003758689.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527900|gb|ADJ26368.1| tRNA pseudouridine synthase A [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 261 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + IEY+G+ Y G Q Q +G+++Q +E A+ +TGE + +H A RTD+GV A QV Sbjct: 7 HKLVLTIEYDGAQYRGSQAQGHGATVQSELETAVARLTGEKIRIHLASRTDAGVSAAEQV 66 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F + ALN +L I++ + V F R A+ R Y YRI+ + Sbjct: 67 ASFRTSLRLPGRTVADALNHFL--PADIAVKKVFRVPDTFDVRRHAVSREYRYRILNTRI 124 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P L + ++ + LD + A LV + + + IR I + S Sbjct: 125 PSPLRERHSYRVYGELDIAAIEQAVGKLVGEHDLAAFASKLGRRPGTTIRRILAAGLTSE 184 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + R+VA+SFL +R+ VG L +G G+ T + EK L A GP AP +GL Sbjct: 185 GEELVFRIVAKSFLPHMVRNIVGVLVKIGTGRLTVAEFEKLLSAAVPGSAGPAAPGKGLC 244 Query: 241 FDSVEYS 247 V Y+ Sbjct: 245 LIKVNYA 251 >gi|289427598|ref|ZP_06429310.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|289159089|gb|EFD07281.1| tRNA pseudouridine synthase A [Propionibacterium acnes J165] gi|313808787|gb|EFS47241.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA2] gi|313824843|gb|EFS62557.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA1] gi|314979788|gb|EFT23882.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA2] gi|315089972|gb|EFT61948.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL072PA1] gi|327325121|gb|EGE66927.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA3] gi|327449322|gb|EGE95976.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA2] gi|332676207|gb|AEE73023.1| tRNA pseudouridine synthase A [Propionibacterium acnes 266] Length = 279 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L ++ + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDIVVTSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLA---LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LDC N + + + Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|39938715|ref|NP_950481.1| tRNA pseudouridine synthase A [Onion yellows phytoplasma OY-M] gi|42559719|sp|P60351|TRUA_ONYPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|39721824|dbj|BAD04314.1| pseudouridylate synthase [Onion yellows phytoplasma OY-M] Length = 243 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y +I+ Y+G+ Y+G+Q+Q ++Q + EKA+ +T + + A RTD GVH+ Q H Sbjct: 6 YKLILSYDGTCYYGYQKQPQKITVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F P K LN L + +N + FHAR+SA + Y Y + Sbjct: 66 FQTTFFLKPTHFQKTLNYLLPPDIRVRQMNFA--TPNFHARYSAKSKIYQYVFSKKPLNA 123 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + + D + + Q + +TI + + Sbjct: 124 FNHHFQIFADKLYFDKITKALKFIEGTHNFFAF---TSETQPKNFSKTIFQAFLKETSHK 180 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + FL IR VGSL +G K + + L K+ LAP + L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKLSLEQFQAMLLGNTTKKATLLAPSKALVLKK 240 Query: 244 VEY 246 + Y Sbjct: 241 IFY 243 >gi|256825854|ref|YP_003149814.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] gi|256689247|gb|ACV07049.1| pseudouridylate synthase I [Kytococcus sedentarius DSM 20547] Length = 297 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 11/257 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M R + Y+G + GW Q ++Q ++E+ + V + V + AGRTD+GVHA Sbjct: 20 MPRLRLDFAYDGRDFHGWATQPGLRTVQETLERGLATVLRAQDVSLTVAGRTDAGVHATG 79 Query: 60 QVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAIRR 110 V H D+ + + AL L + + + V F ARFSA+RR Sbjct: 80 AVCHLDVAHAAWAAVPGRSDRAPAEALVTRLAGVLPADLVVHRATEVPDAFDARFSALRR 139 Query: 111 SYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y Y + R+ +G K LD E M AAQ LVG DF F A++ Sbjct: 140 HYRYLLCDRRETLDPRRRGMVVAWRKPLDAEAMHAAAQQLVGLGDFAAFCKPREGATTVR 199 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + V A +F H+ +R+ VG++ VG+G+ + + ++R Sbjct: 200 TLERFTWHRDEQGWVVGEVSADAFCHSMVRALVGAVVPVGEGRQPVDWPRQVQEGRERLG 259 Query: 230 CGPLAPPEGLYFDSVEY 246 + P GL +V+Y Sbjct: 260 AVQVMPAHGLTLVAVDY 276 >gi|154507834|ref|ZP_02043476.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] gi|153797468|gb|EDN79888.1| hypothetical protein ACTODO_00316 [Actinomyces odontolyticus ATCC 17982] Length = 302 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 83/276 (30%), Positives = 122/276 (44%), Gaps = 33/276 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 4 RRLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQV 63 Query: 62 AHFDLVREWVPVILCKA---------------LNAYL----------------KISDTIS 90 H D+ + + LN L + + + Sbjct: 64 CHADISEAAWARLSPRGGESNEQAVASAIVRRLNKILSGRYGERARGRDLAAARGTCDVR 123 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I + ++VD F ARFSA+ RSY YR+ R L + + + LD M A L+ Sbjct: 124 IYSAAVVDPSFDARFSALGRSYAYRVSDRP--EPLGRWDRLWVEEPLDEAAMNEAGAALL 181 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G HDF F A++ + RV A +F H+ +RS VG+L LVG Sbjct: 182 GEHDFLGFCRPREGATTIRTLRTLLAERDAEGTLVFRVEADAFCHSMVRSLVGALLLVGS 241 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G T + L+A+ R E P+AP GL + VEY Sbjct: 242 GARDVTYPVQILRARSRSEAAPIAPAHGLTLEGVEY 277 >gi|282855153|ref|ZP_06264485.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|295131337|ref|YP_003582000.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|282581741|gb|EFB87126.1| tRNA pseudouridine synthase A [Propionibacterium acnes J139] gi|291375873|gb|ADD99727.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK137] gi|313773224|gb|EFS39190.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL074PA1] gi|313810419|gb|EFS48133.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA1] gi|313812247|gb|EFS49961.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA1] gi|313817968|gb|EFS55682.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA2] gi|313823371|gb|EFS61085.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA2] gi|313830085|gb|EFS67799.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL007PA1] gi|313832643|gb|EFS70357.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL056PA1] gi|314924129|gb|EFS87960.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL001PA1] gi|314925807|gb|EFS89638.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA3] gi|314960817|gb|EFT04918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA2] gi|314964970|gb|EFT09069.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA2] gi|314973066|gb|EFT17162.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA1] gi|314975562|gb|EFT19657.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL045PA1] gi|314982235|gb|EFT26328.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA3] gi|314984846|gb|EFT28938.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA1] gi|314986106|gb|EFT30198.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA2] gi|314988720|gb|EFT32811.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA3] gi|315079903|gb|EFT51879.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL078PA1] gi|315083346|gb|EFT55322.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA2] gi|315086881|gb|EFT58857.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA3] gi|315090495|gb|EFT62471.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA4] gi|315093731|gb|EFT65707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL060PA1] gi|315096707|gb|EFT68683.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL038PA1] gi|327325250|gb|EGE67055.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL096PA2] gi|327325550|gb|EGE67349.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL103PA1] gi|327444051|gb|EGE90705.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA1] gi|327449450|gb|EGE96104.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL043PA2] gi|328756334|gb|EGF69950.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL020PA1] gi|328761333|gb|EGF74860.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL099PA1] Length = 279 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L ++ + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDIVVTSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLA---LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LDC N + + + Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|237739188|ref|ZP_04569669.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] gi|229423788|gb|EEO38835.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31] Length = 246 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 109/247 (44%), Gaps = 5/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L I IL++ VD++F+AR A + Y I Sbjct: 64 SNFYTSSTIPVEKYKYLLTRAL--PKDIDILSVEEVDEKFNARHDA--KMREYVYIISWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + +D E + +G HDF FR C + +R I DV F Sbjct: 120 KNPFEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVKYFS 179 Query: 182 NLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +I + +FL +Q+R VG+ V ++ L ++ L EGLY Sbjct: 180 ENKLKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAEGLY 239 Query: 241 FDSVEYS 247 + + YS Sbjct: 240 LNRINYS 246 >gi|327332268|gb|EGE74004.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL097PA1] Length = 279 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHF 175 + + LD + + A L+G DF F A++ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAK 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF] Length = 282 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 114/247 (46%), Gaps = 5/247 (2%) Query: 5 CMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ + GW RQ G ++Q ++E+A+ +VT + AGRTD+GVHA QV Sbjct: 2 RLDLSYDGTDFHGWARQPGGRRTVQETLEEALRVVTRAPAPYELTVAGRTDAGVHARGQV 61 Query: 62 AHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH + E K L + + ++ + F ARFSAI R Y YR+ + Sbjct: 62 AHVGMADEVWAEHGEKLLKRLAGRLPKDVRVWRVAPAPEGFDARFSAIWRRYAYRVADQA 121 Query: 121 A-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L +G + LD + M AA+ L+G HDF + A++ F Sbjct: 122 GGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCKKREGATTIREMQQLFWTRR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++E V A +F H +RS VG+L VGDG + K L A R + P GL Sbjct: 182 ADGVLEATVRADAFCHNMVRSLVGALLFVGDGHRPPSWPAKVLAAGVRDSAVHVVRPVGL 241 Query: 240 YFDSVEY 246 + V Y Sbjct: 242 TLEEVGY 248 >gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469] Length = 294 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 108/247 (43%), Gaps = 6/247 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+ + G+ Q S+ G + +A+ V V + AGRTD+GVHA Q Sbjct: 40 IKLGYRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYVSLP 99 Query: 66 LVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + K + + D ISI L + F ARF A RSY YRI A Sbjct: 100 VYDADLSFSGEKLVRSLTALTDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSARPI 159 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-----HCQASSPIRTIDHFDVNS 179 L W LD + M AAQ LVG HDF +F R + Sbjct: 160 LGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEIEEA 219 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 LI + + +FLH +R+ VG+L +G G +++ L A++R G AP +GL Sbjct: 220 GEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPAQGL 279 Query: 240 YFDSVEY 246 F +V Y Sbjct: 280 TFVNVRY 286 >gi|293190229|ref|ZP_06608725.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] gi|292821045|gb|EFF79998.1| tRNA pseudouridine synthase A [Actinomyces odontolyticus F0309] Length = 302 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 82/276 (29%), Positives = 121/276 (43%), Gaps = 33/276 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++QG +E A+ + + E VV AGRTD+GVHA QV Sbjct: 4 RRLRLDLGYDGTDFRGWAAQPGLRTVQGEVEAALAMASREDVVTTVAGRTDAGVHARHQV 63 Query: 62 AHFDLVREWVPVILCKA---------------LNAYL----------------KISDTIS 90 H D+ + + LN L + + + Sbjct: 64 CHADISEAAWARLSPRGGESDEQAVASAIVRRLNKILSGRYGERARGRDLAVARGTCDVR 123 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 I + ++VD F ARFSA+ RSY YR+ R L + + + LD M A L+ Sbjct: 124 IYSAAVVDPSFDARFSALGRSYAYRVSDRP--EPLGRWDRLWVEEPLDEAAMNEAGAALL 181 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G HDF F A++ + RV A +F H+ +RS VG+L LVG Sbjct: 182 GEHDFLGFCRPREGATTIRTLRTLLAERDAEGTLVFRVEADAFCHSMVRSLVGALLLVGS 241 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G + L+A+ R E P+AP GL + VEY Sbjct: 242 GARDVAYPVQILRARSRSEAAPIAPAHGLTLEGVEY 277 >gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680] gi|38258718|sp|Q82DM1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680] Length = 285 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 78/251 (31%), Positives = 110/251 (43%), Gaps = 6/251 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHA 57 +R + + Y+G+ + GW +Q ++QG IE A+ VT + AGRTD+GVHA Sbjct: 10 VRVRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDALRTVTRSGETTYELTVAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAH DL E K L + + +L+ F+ARFSAI R Y YR+ Sbjct: 70 RGQVAHVDLPGELWAEHQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARFSAIWRRYAYRV 129 Query: 117 -ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 L + LD + M AA+ LVG HDF + A++ + Sbjct: 130 TDNTGGVDPLLRSHVLWHDWPLDVDAMNEAARRLVGEHDFAAYCKKREGATTIRTLQELS 189 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V +I V A +F H +RS +G+L VGDG K L R + Sbjct: 190 LVRGDDGVITATVCADAFCHNMVRSLIGALLFVGDGHRGPDWPGKVLAVGVRDSAVHVVR 249 Query: 236 PEGLYFDSVEY 246 P GL + V Y Sbjct: 250 PHGLTLEEVGY 260 >gi|332295380|ref|YP_004437303.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] gi|332178483|gb|AEE14172.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM 14796] Length = 283 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 75/254 (29%), Positives = 114/254 (44%), Gaps = 13/254 (5%) Query: 1 MIR-------YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDS 53 M R II Y+G+ + G+Q Q ++Q IE+ + + E V V AGRTD+ Sbjct: 1 MPRSFSLKMDIAAIISYDGTNFHGFQMQNQSRTVQLVIEQKLEKIFKERVCVVPAGRTDA 60 Query: 54 GVHALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA+ QV F L + L LN +L D I I + ++ F++RFSA R Y Sbjct: 61 GVHAIGQVISFRLAKCPFDVEKLQNILNYHL--PDDIRISEMRLMPADFNSRFSAKSRVY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +Y I ++ A W + SL E+++ + R F +F + T+ Sbjct: 119 VYAISAKKDICAHLNRYFWNLDISL--EDLKATLNLIPNRFCFRSFSRVSKDRKLNFGTV 176 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 F + + + A SFL +R G V GK T D ++AL+ + R Sbjct: 177 TFSKCVVFEDFLYFIIEAPSFLWHTVRFLFGEAVAVAKGKRTLEDYKEALEGKKR-LVLY 235 Query: 233 LAPPEGLYFDSVEY 246 APP+GL+ V Y Sbjct: 236 KAPPKGLHLWGVSY 249 >gi|172040043|ref|YP_001799757.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] gi|171851347|emb|CAQ04323.1| tRNA pseudouridine synthase A [Corynebacterium urealyticum DSM 7109] Length = 324 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 13/257 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R M + Y+G+ + GW QK G ++QG +E+ + LV V + AGRTD+GVHA Q Sbjct: 50 VRVRMDVSYDGTDFHGWAAQKGGLRTVQGVLEEKLTLVCRTPVELTVAGRTDAGVHADGQ 109 Query: 61 VAHFDLVREWVPVIL-------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ E + L+ L ++ + Y Sbjct: 110 VCHADIPAEAFTHRSLARPEDLVRRLSRMLPEDIRLNAAVAAPEGFDARFSALRRHYVYR 169 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--- 170 PL + +D E ++IAA LVG ++F + A++ Sbjct: 170 -VCTAPGGPLPRRVRDTARWRRPVDLEKVQIAADALVGLNNFAAYCKAREGATTIRELQE 228 Query: 171 -TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 T + E VVA +F + +RS VG+ VG+GK + L+ +R Sbjct: 229 FTWKDVSTPAEPQTYEAHVVADAFCWSMVRSIVGACLTVGEGKRPEGFTAELLELDERSS 288 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP EGL V+Y Sbjct: 289 QVPVAPAEGLNLVGVDY 305 >gi|15807281|ref|NP_296011.1| pseudouridylate synthase I [Deinococcus radiodurans R1] gi|42559894|sp|Q9RS37|TRUA_DEIRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|6460099|gb|AAF11837.1|AE002061_4 pseudouridylate synthase I [Deinococcus radiodurans R1] Length = 280 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + + ++G Y GWQ Q+N S+Q +++ A+ + GE + AGRTD+GVHA Sbjct: 16 TRLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHAEAM 75 Query: 61 VAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 H+D V L +ALNA+L ++S+L+ + FHARFS R Y+YR+ Sbjct: 76 PLHWDVPTTFRVPLVQLPRALNAWL--PASVSVLSAEVAPAGFHARFSCTERRYVYRLWV 133 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L GRA +P LD E M AAQ L+G HDF F + + + R + +V Sbjct: 134 APQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAFATREDRQTV--RDLLRLEVQ 191 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G L +I V SFL +R VG+L LVG GK + ++E L +++R G PP G Sbjct: 192 PQGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPPGG 251 Query: 239 LYFDSVEY 246 LYF EY Sbjct: 252 LYFAGAEY 259 >gi|126433747|ref|YP_001069438.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] gi|126233547|gb|ABN96947.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS] Length = 299 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 115/260 (44%), Gaps = 18/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA QV Sbjct: 23 TRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQV 82 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L +L + I ++ F ARFSA Sbjct: 83 AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFL--PADVRIRDIIRAPTGFDARFSA 140 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR Y YR+ T + + R D E M A LVG DF F A+ Sbjct: 141 LRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAFCRHREGAT 200 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + IR + + G+L+ V A +F + +RS VG+L VG+ + L A Sbjct: 201 T-IRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLSATR 259 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R APP+GL V+Y Sbjct: 260 RSSEFAAAPPQGLTLVGVDY 279 >gi|108798087|ref|YP_638284.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119867183|ref|YP_937135.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] gi|108768506|gb|ABG07228.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS] gi|119693272|gb|ABL90345.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS] Length = 299 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 78/260 (30%), Positives = 115/260 (44%), Gaps = 18/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q ++ G I++A+ V V V AGRTD+GVHA QV Sbjct: 23 TRLRLDVSYDGTDFAGWAPQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATGQV 82 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L +L + I ++ F ARFSA Sbjct: 83 AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFL--PADVRIRDIIRAPTGFDARFSA 140 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR Y YR+ T + + R D E M A LVG DF F A+ Sbjct: 141 LRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAAFCRHREGAT 200 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + IR + + G+L+ V A +F + +RS VG+L VG+ + L A Sbjct: 201 T-IRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGEHRREPEWCAGLLSATR 259 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R APP+GL V+Y Sbjct: 260 RSSEFAAAPPQGLTLVGVDY 279 >gi|15843050|ref|NP_338087.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|148824665|ref|YP_001289419.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis F11] gi|161352460|ref|NP_217972.2| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv] gi|161511525|ref|NP_857124.2| tRNA pseudouridine synthase A [Mycobacterium bovis AF2122/97] gi|253800500|ref|YP_003033501.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|254234047|ref|ZP_04927372.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|254366056|ref|ZP_04982101.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|289555726|ref|ZP_06444936.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289747288|ref|ZP_06506666.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298526939|ref|ZP_07014348.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308377357|ref|ZP_07441941.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308378330|ref|ZP_07482228.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308379519|ref|ZP_07668975.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|54039781|sp|P65847|TRUA_MYCBO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|54042086|sp|P65846|TRUA_MYCTU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|13883394|gb|AAK47901.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551] gi|124599576|gb|EAY58680.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C] gi|134151569|gb|EBA43614.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str. Haarlem] gi|148723192|gb|ABR07817.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis F11] gi|253322003|gb|ACT26606.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 1435] gi|289440358|gb|EFD22851.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 605] gi|289687816|gb|EFD55304.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis 02_1987] gi|298496733|gb|EFI32027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|308348190|gb|EFP37041.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu008] gi|308352914|gb|EFP41765.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu009] gi|308356757|gb|EFP45608.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu010] gi|328460231|gb|AEB05654.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN 4207] Length = 297 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA QV Sbjct: 22 VRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQV 81 Query: 62 AHFDLVREWVPVILCKA--------------LNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P +A L +L I + + Sbjct: 82 AHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALR 141 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + P+ LD + M A++ L+G HDF F A++ Sbjct: 142 RHYVYRLSTAPYGVEPQ-QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATT 200 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 201 -IRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 259 Query: 228 KECGPLAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 260 SSDFAVAPAHGLTLIQVDY 278 >gi|124024021|ref|YP_001018328.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] gi|166228748|sp|A2CC53|TRUA_PROM3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|123964307|gb|ABM79063.1| tRNA pseudouridine synthase A [Prochlorococcus marinus str. MIT 9303] Length = 295 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ S+Q +E+AI + + + AGRTD+GVHA Q Sbjct: 16 RRIGLSVQYEGSNFCGWQRQPQAVSVQQVLEEAISQLDPQRPIQAVAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +TI + +HA SA R Y Y I + Sbjct: 76 VVHFDCCGPIPAERWAPALNGRL--PNTIRVREAVARPASWHACHSATYRRYRYTIYNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD M++A + L+G D + F+ + + T+ + Sbjct: 134 RPNLFLTPWSWHRYHVRLDETVMQVALEGLLGLQDLSAFQRTGSRRAHARTTVQDVKIER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I + A FL+ +R +G L +G+ + E+ + + R+E AP +GL Sbjct: 194 QGDLIMIEIQASGFLYGMVRLLMGQLVALGEHRLNLQTFERRWKEKRRQEVKEAAPAQGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|313819879|gb|EFS57593.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL036PA1] Length = 279 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L ++ + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRGLTPDIVVTSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLA---LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LDC N + + + Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDCLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|50843266|ref|YP_056493.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289424889|ref|ZP_06426668.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|62901286|sp|Q6A6S8|TRUA_PROAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50840868|gb|AAT83535.1| tRNA pseudouridine synthase A [Propionibacterium acnes KPA171202] gi|289154588|gb|EFD03274.1| tRNA pseudouridine synthase A [Propionibacterium acnes SK187] gi|313763186|gb|EFS34550.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL013PA1] gi|313793310|gb|EFS41368.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA1] gi|313801047|gb|EFS42315.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL110PA2] gi|313828418|gb|EFS66132.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL063PA2] gi|313838001|gb|EFS75715.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL086PA1] gi|314914385|gb|EFS78216.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL005PA4] gi|314917708|gb|EFS81539.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA1] gi|314919564|gb|EFS83395.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL050PA3] gi|314930155|gb|EFS93986.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL067PA1] gi|314957174|gb|EFT01278.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL027PA1] gi|314957815|gb|EFT01918.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL002PA1] gi|314963491|gb|EFT07591.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL082PA1] gi|314969927|gb|EFT14025.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA1] gi|315077220|gb|EFT49285.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL053PA2] gi|315097933|gb|EFT69909.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA2] gi|315100698|gb|EFT72674.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL046PA1] gi|315106086|gb|EFT78062.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA1] gi|315109179|gb|EFT81155.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL030PA2] gi|327451475|gb|EGE98129.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA3] gi|327451552|gb|EGE98206.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL092PA1] gi|327451838|gb|EGE98492.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL083PA2] gi|328752053|gb|EGF65669.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL087PA1] gi|328755550|gb|EGF69166.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL025PA2] Length = 279 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHF 175 + + LD + + A L+G DF F A++ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAK 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|330444180|ref|YP_004377166.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] gi|328807290|gb|AEB41463.1| tRNA pseudouridine synthase A [Chlamydophila pecorum E58] Length = 267 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 123/249 (49%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + +++ Y G+ Y GWQRQ +IQ +E + V + +GRTDSGVHA Q Sbjct: 1 MKKIVLLLAYQGTAYAGWQRQPQHLTIQEVLETLFMPILHSRVPMVASGRTDSGVHAYGQ 60 Query: 61 VAHF---DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V HF D P L K LNA L I + ++++ D FHAR+ AI + Y Y + Sbjct: 61 VVHFSLPDHPLTSDPCKLKKLLNARL--PKDIVVRDIALTDASFHARYCAIAKEYHYTLS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 PL ++ ++ P + + M AQ+L+G HDF +F ++ + +S IRT+ + Sbjct: 119 KNIKPLPWQRNFSYSPPHRIRADLMHQGAQYLIGTHDFASFANLGREYTSTIRTLYKVAI 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL+ +R+ VG+L + G + + L+ ++R++ P AP Sbjct: 179 EETEHTLTLIFKGNGFLYKMVRNLVGALLDINKGAYPPEHILNMLKEKNRRKGPPSAPAH 238 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 239 ALSLHHVCY 247 >gi|308371354|ref|ZP_07424662.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308372553|ref|ZP_07667408.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308373747|ref|ZP_07667643.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308374881|ref|ZP_07667891.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308380705|ref|ZP_07669261.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308406162|ref|ZP_07669527.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|308329092|gb|EFP17943.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu003] gi|308332900|gb|EFP21751.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu004] gi|308336560|gb|EFP25411.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu005] gi|308340435|gb|EFP29286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu006] gi|308360702|gb|EFP49553.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu011] gi|308364317|gb|EFP53168.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu012] gi|323717939|gb|EGB27128.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CDC1551A] Length = 303 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G ++ A+ + V + AGRTD+GVHA QV Sbjct: 28 VRLRLDIAYDGTDFAGWAAQVGQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQV 87 Query: 62 AHFDLVREWVPVILCKA--------------LNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P +A L +L I + + Sbjct: 88 AHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALR 147 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + P+ LD + M A++ L+G HDF F A++ Sbjct: 148 RHYVYRLSTAPYGVEPQ-QARYITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATT 206 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D + G L+ V A +F + +RS VG+L VG+ + +T + L A R Sbjct: 207 -IRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGR 265 Query: 228 KECGPLAPPEGLYFDSVEY 246 +AP GL V+Y Sbjct: 266 SSDFAVAPAHGLTLIQVDY 284 >gi|57867747|ref|YP_189363.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|293368464|ref|ZP_06615088.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|62901168|sp|Q5HM30|TRUA_STAEQ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57638405|gb|AAW55193.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis RP62A] gi|291317422|gb|EFE57844.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis M23864:W2(grey)] gi|329737018|gb|EGG73273.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU045] Length = 267 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] gi|62901178|sp|Q5JI92|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1] Length = 267 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 107/249 (42%), Gaps = 26/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 ++ + + Y+GS ++G+QRQ +++G I K + + + E GA RTD GV A Sbjct: 1 MKLALRVAYDGSAFYGFQRQPGVRTVEGEIIKVLQKLGIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + E + + LN +L + +L ++ V FH RF A ++Y Y ++ Sbjct: 61 FFNVVSF-VPSERPDLARPEVLNHHLS---DVWVLGIAEVPDDFHPRFWAKFKTYRYYLV 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L+ + A L D PIR ++ +V Sbjct: 117 NEGFDLSAMRECASLFVGRHDFSAFAKL-----------------EPGRDPIREVERVEV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I V +SFL +R V +L+ G G + ++E+ L + + + P APPE Sbjct: 160 IERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERML-SGEYGKKIPPAPPE 218 Query: 238 GLYFDSVEY 246 GL +EY Sbjct: 219 GLVLWHIEY 227 >gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 286 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 76/257 (29%), Positives = 113/257 (43%), Gaps = 16/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 Y + I Y+G Y G+Q Q ++ +IQ +E+A+ +TG E + + AGRTD+GVHA Sbjct: 18 YALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHARG 77 Query: 60 QVAHFDLVREWVPV--ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVAHF + KA+N L I + FH+RF A ++Y Y + Sbjct: 78 QVAHFYCEKSLGEDLTRCQKAMNGML--PKDIRVDAFWEPHPLFHSRFHASGKTYHYYVD 135 Query: 118 TRQAPLALEKGR-AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 R + + + D E +R AAQ VG D+ F + S+ R Sbjct: 136 ARATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDRNTTRTI 195 Query: 177 VNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 LI + V FL+ Q+R+ VG+L +V GK L ++ +DR Sbjct: 196 RRFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDRSR 255 Query: 230 CGPLAPPEGLYFDSVEY 246 AP GL+ V Y Sbjct: 256 APMGAPARGLFLHEVFY 272 >gi|27468710|ref|NP_765347.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|32130291|sp|Q8CML6|TRUA_STAES RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|27316258|gb|AAO05433.1|AE016750_38 tRNA pseudouridine synthase A [Staphylococcus epidermidis ATCC 12228] gi|329731249|gb|EGG67619.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU144] Length = 267 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVNETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|218134082|ref|ZP_03462886.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] gi|217991457|gb|EEC57463.1| hypothetical protein BACPEC_01972 [Bacteroides pectinophilus ATCC 43243] Length = 272 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 125/249 (50%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y M +EY+G Y GWQR N +++ I + + +TG V + RT++GVHA Sbjct: 27 MYNYRMTLEYDGGRYAGWQRMGRDDNSNTVSAKITEVLKKMTGSDVEIFCGSRTETGVHA 86 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QVA+F L RE+ + LN YL I++L L ++FH++ +A R+Y+YR+ Sbjct: 87 YGQVANFKLDREYRAREIQNYLNRYL--PQDIAVLELEETQERFHSQLNAKSRTYVYRVD 144 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T+ E+ + D + M AAQ+ +G HD+ F ++ + S +R ++ D+ Sbjct: 145 TKNIANVFERRYMYHTFHKPDVDAMNKAAQYFLGEHDYKVFSTVK-KNKSTVRNVESVDI 203 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+ +EI + A FLH R +G L +G G+ D+ K L E A Sbjct: 204 YDDGDTLEITIKADDFLHNMARLMIGILLDIGSGERRPEDVRKLLDGVKGVEISKPAESY 263 Query: 238 GLYFDSVEY 246 GLY VEY Sbjct: 264 GLYLLEVEY 272 >gi|134103229|ref|YP_001108890.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|291007979|ref|ZP_06565952.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] gi|133915852|emb|CAM05965.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL 2338] Length = 296 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ +FGW +Q + ++QG +E A+ V AGRTD+GVHA Sbjct: 14 VRLRLEVSYDGTDFFGWAKQPDRRTVQGLLEDALRKQPPGRSVPRSVVVAGRTDTGVHAT 73 Query: 59 RQVAHFD-------------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 QV H D L +P + + + +L + F ARF Sbjct: 74 GQVVHVDVVPSAPDEGGRLPLDEHGIPDLDRMRHRWNRILPGDVRVLGARVAPAGFDARF 133 Query: 106 SAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+RR Y Y++ L + + LD + + A++ L+G +DF F Sbjct: 134 SAMRRHYRYQVSDAPWGVDPLRRRDTLSWNRPLDVDALNAASEDLLGLNDFAAFCKQREG 193 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A++ + +L+ RV A +F H+ +RS VG+L +VGDG+ + T +AL+A Sbjct: 194 ATTVRELQRFSWERAEPHLLVARVSADAFCHSMVRSLVGALLMVGDGRRSRTWPAEALRA 253 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 +R +AP GL V+Y Sbjct: 254 AERTST--VAPAHGLTLVGVDY 273 >gi|260435918|ref|ZP_05789888.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] gi|260413792|gb|EEX07088.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8109] Length = 293 Score = 148 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 108/248 (43%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+NG S+Q +E AI + V AGRTD+GVHA Q Sbjct: 16 QRIALSLQYEGSSFCGWQRQRNGRSVQAVLEDAIAQLDPHRPVQTFAAGRTDAGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 76 VVHFDCSGPIPARKWAPALNGRL--PSTIRVRESVARPMDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD MR A ++G HDF+ F + + T+ V Sbjct: 134 RPNLFLSPWSWHRYQHRLDASRMRDALSTMLGLHDFSAFMKAGSRRAHARTTVQEVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R + L VG+ + + E+ + + R E AP GL Sbjct: 194 QGDLLRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVAAFEQRWRERRRHEVKEAAPATGL 253 Query: 240 YFDSVEYS 247 Y+ Sbjct: 254 CLLRAGYT 261 >gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264] Length = 249 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 M+ +Y+GS ++G+QRQKN ++QG IEK I + + + +GRTD GVHAL QV Sbjct: 5 KNIKMVYQYDGSKFYGFQRQKNKKTVQGEIEKVILKNFSQKINMISSGRTDKGVHALGQV 64 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F + + + + +N L I IL++ + ++F++RF A R+YLY + + Sbjct: 65 SNFFIDEKIPLEAIKRQINKNLYGE--IKILSVEEIKREFNSRFDAKSRTYLYIMKKEEE 122 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVNS 179 E I ++ E + + G++DF++F + +R I + Sbjct: 123 ITPFESNYITGIKNDINIEQFQKIMEIFKGKYDFSSFMKKDKAIRNTMREIYNIKCEYEE 182 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + + SFL T IR +GS + GK ++ L+ D + LAP EGL Sbjct: 183 REKKIYVEICGSSFLKTMIRIMIGSAMAIYFGKEREDYIKMRLENPDADKPKILAPSEGL 242 Query: 240 YFDSVEY 246 Y V+Y Sbjct: 243 YLYRVDY 249 >gi|251812078|ref|ZP_04826551.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|282875373|ref|ZP_06284246.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|251804412|gb|EES57069.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis BCM-HMP0060] gi|281296138|gb|EFA88659.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis SK135] gi|329736438|gb|EGG72706.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis VCU028] Length = 267 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 KGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDKNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|326383234|ref|ZP_08204922.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] gi|326197984|gb|EGD55170.1| tRNA pseudouridine synthase A [Gordonia neofelifaecis NRRL B-59395] Length = 296 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 8/251 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R ++I Y+G+ + GW Q ++ +IE+A+ V + + AGRTD+GVHA QVA Sbjct: 16 RLRLLIGYDGTDFSGWATQPGRRTVCETIEQALGTVLRAPIRLTVAGRTDAGVHAAGQVA 75 Query: 63 HFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 H D+ + A L + D + + + V + F ARFSA+ R+Y YR+ Sbjct: 76 HCDVPAASLRTRSIDGDPARLVRRLAKMLPDDVRVKRIEAVSEDFDARFSALARTYEYRL 135 Query: 117 IT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LD E M A+ LVG +DF F +++ IR + F Sbjct: 136 TDAPWGAEPTLARITADWTRPLDVEAMNTASAGLVGLNDFAAFCRYREGSTT-IRELQRF 194 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D G ++ V+A +F + +RS VG++ VGDG+ + L + R P+A Sbjct: 195 DWRREGPVVVGTVIADAFCWSMVRSLVGAVASVGDGRRSLGWCTDLLDQRARSAQVPVAQ 254 Query: 236 PEGLYFDSVEY 246 GL V+Y Sbjct: 255 ARGLSLIGVDY 265 >gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM 13280] Length = 292 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 11/250 (4%) Query: 6 MIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ + G+ Q G ++ G + +A+ + V + AGRTD+GVHA+ Q Sbjct: 36 FRLGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQYVSI 95 Query: 65 DLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + +A+ A L ++ + + F ARF A R+Y YRI+T A Sbjct: 96 PAHADELAITHARWMRAMAALLPSDIALNAVYHARP--GFSARFDARSRTYTYRIVTGDA 153 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + W LD + M AA LV + ++ R + Sbjct: 154 RPLLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIAVSFERA 213 Query: 181 GNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 L E + +FLH+ +R+ VGSL VG G+ L AL A DR+ GP AP Sbjct: 214 SALGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAPA 273 Query: 237 EGLYFDSVEY 246 GL F V Y Sbjct: 274 RGLCFMDVAY 283 >gi|300742028|ref|ZP_07072049.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] gi|300381213|gb|EFJ77775.1| tRNA pseudouridine synthase A [Rothia dentocariosa M567] Length = 316 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 76/278 (27%), Positives = 113/278 (40%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y+G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q Sbjct: 4 QRVRIDCAYDGTWFSGWARQPNLVTVQGVLEDALELVLRTHHRVTVAGRTDAGVHAQAQT 63 Query: 62 AHFDLVREWVPVILCK---------------------------------ALNAYLKISDT 88 H D+ E + + + L+ S Sbjct: 64 IHLDIATETWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLV 123 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + + D + R +Y +P L + AW IP+SLD E++ AA Sbjct: 124 LHQVQPVPQDFDARFSATGRRYTYRILDGQGSSPDPLHRAYAWCIPESLDLEDLNKAAHE 183 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L G HDF +F A++ + +IE V A +F H +RS +G+L L Sbjct: 184 LTGLHDFLSFCKPREGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVLY 243 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK T L + L+ R +APP GL ++Y Sbjct: 244 GTGKRTQAWLRERLENPQRDASLIMAPPHGLALAHIDY 281 >gi|225020488|ref|ZP_03709680.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] gi|224946877|gb|EEG28086.1| hypothetical protein CORMATOL_00495 [Corynebacterium matruchotii ATCC 33806] Length = 290 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 114/261 (43%), Gaps = 15/261 (5%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVH Sbjct: 1 MTPIRIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 A+ QVAHFD+ R + + + +I F ARFSA+RR Sbjct: 61 AVAQVAHFDVPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARFSALRR 120 Query: 111 SYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y+YR+ T PK +D M+ A L+G HDF F A++ Sbjct: 121 HYVYRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAFCRHRDGATTIR 180 Query: 170 R----TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 T + + E V A +F + +RS VG +VG+GK + L Sbjct: 181 DLQEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFATSLLAET 240 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R P+AP GL V+Y Sbjct: 241 SRSALVPVAPAAGLSLVGVDY 261 >gi|305680135|ref|ZP_07402945.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] gi|305660755|gb|EFM50252.1| tRNA pseudouridine synthase A [Corynebacterium matruchotii ATCC 14266] Length = 290 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 113/261 (43%), Gaps = 15/261 (5%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + + Y+G+ + GW RQ + ++Q +E A+ LV + + + AGRTD+GVH Sbjct: 1 MTPIRIRLDLAYDGTHFHGWARQGHSELRTVQQVLEDALTLVLRQPIALTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLV------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 A QVAHFD+ R + + + +I F ARFSA+RR Sbjct: 61 AAAQVAHFDVPAAALDTRSIAGDPGRLVRRLARLLPTDVRVHAATIAPPDFDARFSALRR 120 Query: 111 SYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y+YR+ T PK +D M+ A L+G HDF F A++ Sbjct: 121 HYVYRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAELIGLHDFAAFCRHRDGATTIR 180 Query: 170 R----TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 T + + E V A +F + +RS VG +VG+GK + L Sbjct: 181 DLQEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCCLVVGEGKRPAGFATSLLAET 240 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R P+AP GL V+Y Sbjct: 241 SRSALVPVAPAAGLSLVGVDY 261 >gi|28493493|ref|NP_787654.1| tRNA pseudouridine synthase A [Tropheryma whipplei str. Twist] gi|28476535|gb|AAO44623.1| pseudouridylate synthase I [Tropheryma whipplei str. Twist] Length = 315 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 52 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQV 111 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 112 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 171 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L MR AA L+G DF F S+ + Sbjct: 172 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMGSTVRHLRQFEVIRQP 231 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 232 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 291 Query: 241 FDSVEY 246 ++Y Sbjct: 292 LIGIDY 297 >gi|78189343|ref|YP_379681.1| tRNA pseudouridine synthase A [Chlorobium chlorochromatii CaD3] gi|123757011|sp|Q3AQT7|TRUA_CHLCH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78171542|gb|ABB28638.1| tRNA pseudouridine synthase [Chlorobium chlorochromatii CaD3] Length = 243 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 117/247 (47%), Gaps = 5/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G+ + GWQRQ ++QG+IEK + +T E V+++GAGRTD GVHA + Sbjct: 1 MRTIRLDIEYDGTDFAGWQRQSGTIPTVQGTIEKLLSQITQEEVLLNGAGRTDKGVHARQ 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L L +LN L TI I N V FHARFSA R+Y Y + Sbjct: 61 QVASCALHSSMELSRLAHSLNCLL--PPTIRICNAVHVTDDFHARFSATERTYRYFV--S 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + P AL LD M+ A +VG HDFT F + + + + Sbjct: 117 ETPSALCNRFTGCANALLDVGVMQQMAAMVVGEHDFTAFSREERDSPAKRCKVTSCRWHR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 ++ +++ A FL + +R V ++ G G+ T + +++ AP GL Sbjct: 177 LHGMVVLQISANRFLRSMVRYLVHAMLQGGKGRLAPTLFQDMVESGTSSYRMVAAPASGL 236 Query: 240 YFDSVEY 246 + + Y Sbjct: 237 FLWRIGY 243 >gi|70725835|ref|YP_252749.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] gi|123735013|sp|Q4L882|TRUA_STAHJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|68446559|dbj|BAE04143.1| tRNA pseudouridine synthase A [Staphylococcus haemolyticus JCSC1435] Length = 267 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y GS + G+Q Q+ G ++Q EK + + V +H + RTD GVHA Q Sbjct: 1 MRILVNISYQGSQFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD P A+N+ L D I + + VD FH R+ + + Y Y++ Sbjct: 61 FHFDTDLNIEPKQWKYAMNSAL--PDDIYVKEVQQVDDHFHCRYDCLGKRYRYKVYQATH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E G I + L+ M AA+H +G HDFT F S + S +RT+ ++ Sbjct: 119 RNPFESGLKTFIKEDLNYSKMNEAAKHFIGTHDFTGFCSQKTEVESKVRTLYQSEIIQTD 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK ++++ L ++R AP EGLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKRHASEVSTLLNEKNRDSVPFTAPAEGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|239994150|ref|ZP_04714674.1| tRNA pseudouridine synthase A [Alteromonas macleodii ATCC 27126] Length = 242 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 110/225 (48%), Gaps = 2/225 (0%) Query: 22 KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNA 81 + S+Q +EKA+ V E + V AGRTD+GVHA QV HF+ +NA Sbjct: 1 REVPSVQEHLEKALSTVANEPIEVQCAGRTDAGVHATGQVVHFNCDAPRSERAWTLGVNA 60 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L S ++ V FHARFSA R Y Y I + A+ I + LD + Sbjct: 61 NLPNSVAVTW--AKNVSDDFHARFSATHRRYRYVIHNAKMRPAILHSGVTHIHRELDEKK 118 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M +AAQ L+G DFT+FR+ CQ+ +P R + V G + I + A +FLH +R+ Sbjct: 119 MHVAAQALLGEQDFTSFRAALCQSKTPFRNVTDVSVYRQGRYVIIDIRANAFLHHMVRNI 178 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+L +G G+ + L +DR + A P GLY V Y Sbjct: 179 TGALVEIGAGEQDVNWIAHLLSLKDRSKSAATAKPNGLYLVDVTY 223 >gi|68536845|ref|YP_251550.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] gi|68264444|emb|CAI37932.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411] Length = 328 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 17/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Q Sbjct: 29 VRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASGQ 88 Query: 61 VAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ + P L + L+ L + + S+ + F ARFSA+RR Y+ Sbjct: 89 VCHADIPVDAFEQRSLTRPEDLVRRLSRML--PADVRLHGASVAPQGFDARFSALRRHYI 146 Query: 114 YRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A + R +D E + A+ L+G +DF F A++ R + Sbjct: 147 YRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAFCKAREGATTV-REL 205 Query: 173 DHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F E V A +F + +RS VG+ VG GK L+ R Sbjct: 206 QEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKR 265 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP EGL V+Y Sbjct: 266 SSAVPVAPAEGLNLVRVDY 284 >gi|260579203|ref|ZP_05847093.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] gi|258602689|gb|EEW15976.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734] Length = 328 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 17/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + Y+G+ + GW Q G ++ G +++ + LVT + + AGRTD+GVHA Q Sbjct: 29 VRVRLEVAYDGTDFHGWATQSGGLRTVAGVLQEKLSLVTRHPIELVVAGRTDAGVHASGQ 88 Query: 61 VAHFDLVREWV-------PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V H D+ + P L + L+ L + + S+ + F ARFSA+RR Y+ Sbjct: 89 VCHADIPADAFEQRSLTRPEDLVRRLSRML--PSDVRLHGASVAPQGFDARFSALRRHYI 146 Query: 114 YRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YR+ T A + R +D E + A+ L+G +DF F A++ R + Sbjct: 147 YRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAFCKAREGATTV-REL 205 Query: 173 DHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F E V A +F + +RS VG+ VG GK L+ R Sbjct: 206 QEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGSGKRPDDFTPGLLKETKR 265 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP EGL V+Y Sbjct: 266 SSAVPVAPAEGLNLVRVDY 284 >gi|169630847|ref|YP_001704496.1| tRNA pseudouridine synthase A [Mycobacterium abscessus ATCC 19977] gi|169242814|emb|CAM63842.1| tRNA pseudouridine synthase A [Mycobacterium abscessus] Length = 294 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q N ++ G + +A + G+ V ++ AGRTD+GVHA QV Sbjct: 16 VRLRLDIAYDGTDFAGWATQVNQRTVAGVLGEAFTTIVGDSVQLYAAGRTDAGVHATGQV 75 Query: 62 AHFDLVREW--------------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ L + L+ +L + ++ + Sbjct: 76 AHLDVPVACLPGLRGRYRPAGAPEFDRLVRRLSRFLPSDVRVLDISRAPAHFDARFSALR 135 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y L L + + LD + M A+++L+G DF F A++ Sbjct: 136 RHYEYRLSTA-SFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCRHREGATT 194 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + FD G + V A +F + +RS VG++ VG+G+ L + R Sbjct: 195 -IRELQRFDWGVDGQRLTAYVSADAFCWSMVRSLVGAVLAVGEGRRPVQWCVDLLNKERR 253 Query: 228 KECGPLAPPEGLYFDSVEY 246 AP GL V+Y Sbjct: 254 SSDFAAAPARGLTLVGVDY 272 >gi|326332230|ref|ZP_08198510.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] gi|325949936|gb|EGD41996.1| tRNA pseudouridine synthase A [Nocardioidaceae bacterium Broad-1] Length = 287 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 21/264 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------VVVHGAGRTDSG 54 +R + + Y+G+ + GW Q ++QG ++ A+ V V AGRTDSG Sbjct: 1 MRIRIDLAYDGTMFHGWATQPGLRTVQGELQAALATALRVPSTGERSQVWVTVAGRTDSG 60 Query: 55 VHALRQVAHFDLVREW-----------VPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QVAHFD+ + L + LN L + + + F+A Sbjct: 61 VHARGQVAHFDIDADVLESSRGRSEQSPLDSLVRRLNGIL--PADLRVHRAVEAPEGFNA 118 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ R Y+YRI+ A L +G + LD M +A+ LVG +DF +F Sbjct: 119 RFSALSRRYVYRIVDDPAFVDPLLRGHVLYRTRPLDLSLMNVASADLVGLNDFASFCKPR 178 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 A++ +IE V+A +F H+ +RS VG L ++G+G+ T +++L Sbjct: 179 EGATTIRDLRQLTWDRRPDGIIEATVLADAFCHSMVRSLVGCLMVIGEGRKDVTWAKESL 238 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 A+ R P+AP GL + V Y Sbjct: 239 AARSRSSSIPIAPANGLTLEEVAY 262 >gi|257054500|ref|YP_003132332.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] gi|256584372|gb|ACU95505.1| pseudouridylate synthase I [Saccharomonospora viridis DSM 43017] Length = 300 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 116/267 (43%), Gaps = 29/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSGV 55 +R + + Y+G+ + GW RQ ++QG +E A+ + G V AGRTD+GV Sbjct: 15 VRLRIDLSYDGTDFSGWARQPGRRTVQGVLEDALAKQPPGASIAG---PVVVAGRTDAGV 71 Query: 56 HALRQVAHFDL---------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 HA+ QV H D+ LN L + +L++ Sbjct: 72 HAIGQVVHVDVTRLAGETRSRMPISSDGLPDLDWARYRLNRVL--PADVRVLSIRRAPAG 129 Query: 101 FHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA++R Y Y++ L + P+ L + M AA L+G HDF F Sbjct: 130 FDARFSAVKRHYRYQVSDAPWGVSPLRRRDTLAWPRPLSVDAMNEAASSLLGLHDFAAFC 189 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A++ ++ + + V A +F H+ +RS VG+L VGDG+ Sbjct: 190 KRREGATTIRELMELRWCRVDEYELHLSVSADAFCHSMVRSLVGALLWVGDGRRDVGWPL 249 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 + L+++ R +AP GL V+Y Sbjct: 250 EVLRSRQRSSV--VAPAHGLTLVKVDY 274 >gi|25027130|ref|NP_737184.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] gi|23492410|dbj|BAC17384.1| putative tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314] Length = 300 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 122/258 (47%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + ++Y+G+ + GW RQ + ++Q +E + +V V + AGRTD+GVHA Sbjct: 19 VRIRLDLDYDGTDFHGWARQGDSDLRTVQKVLEDNLGMVLRAPVELTVAGRTDAGVHAAG 78 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAHFD+ RE + L + I + ++ + F ARFSA+RR Y+ Sbjct: 79 QVAHFDIPRESLQQRSIDGDPTKLVRRLSRLLPEDIRVHGVNYAPEGFDARFSALRRHYV 138 Query: 114 YRIITRQAPLALEKGRAWL-IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ----ASSP 168 YRI T A + R PK +D + M+ AA L+G HDF F Sbjct: 139 YRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVAFCKAKPNASTVRELQ 198 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T + L E VVA +F + +RS VGS VG+G+ + L A +R Sbjct: 199 EFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSCMAVGEGRRAGDFTAQLLTATERS 258 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP +GL V+Y Sbjct: 259 PDVPVAPAKGLSLVGVDY 276 >gi|319400595|gb|EFV88820.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis FRI909] Length = 267 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 118/244 (48%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ ++ + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSEIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|256831855|ref|YP_003160582.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] gi|256685386|gb|ACV08279.1| tRNA pseudouridine synthase A [Jonesia denitrificans DSM 20603] Length = 310 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 78/258 (30%), Positives = 111/258 (43%), Gaps = 14/258 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + Y G+ + GW RQ S+QG++E A+ + GE + V AGRTD+GVHA QV Sbjct: 26 RIRCDVAYRGTDFVGWARQPGLRSVQGTLEDALERLMGERIAVTVAGRTDAGVHARGQVV 85 Query: 63 HFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRSYL 113 H D+ + + + AL A L + + ++ F ARFSA+ R+Y Sbjct: 86 HCDVPGDRWERLPGRSDRTPGEALRAKLGGILPSDVVVRRVAPAPPGFDARFSALSRTYY 145 Query: 114 YRI-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 YRI L + LD E M A LVG DF F AS+ Sbjct: 146 YRIADDVMMRDPLTAPFVLWVRSPLDVEAMNRGAAPLVGLRDFAAFCKPRPGASTIRELQ 205 Query: 173 D----HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 D + L+ V A +F H +R+ VG+ VG G L +AL ++ R Sbjct: 206 DFRWERVEQGPDEGLVRATVRADAFCHNMVRALVGASLDVGRGVRGEEWLVQALTSKSRV 265 Query: 229 ECGPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 266 NSSAVVQPHGLTLEQVAY 283 >gi|19704921|ref|NP_602416.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|42559836|sp|Q8R601|TRUA_FUSNN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19712818|gb|AAL93715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 7/249 (2%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA Sbjct: 3 MRRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHAN 62 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 63 HQVSNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYII-- 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 E + + + E + +G HDF FR C + +R I +V Sbjct: 119 SWEKNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVK 178 Query: 179 SFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 FG I + +FL +Q+R VG+ + G+ + L ++ L E Sbjct: 179 YFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAE 238 Query: 238 GLYFDSVEY 246 GLY + +EY Sbjct: 239 GLYLNKIEY 247 >gi|331090989|ref|ZP_08339831.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] gi|330405211|gb|EGG84747.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_46FAA] Length = 248 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR ++ ++I I + I +T E V + RT+ GVHA Sbjct: 1 MRNIKLTLEYDGSRYQGWQRLGKNESSNTIANKIIEVIKKMTNEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ +F + + + LN YL I++ ++ ++FHA +A + Y+YR+ Sbjct: 61 YAQIVNFKTTSDMKLGEIKQYLNRYL--PMDIAVTDIEEKPERFHASLNATSKIYMYRMA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P E+ + + K D + M+ AA LVG+HDF F ++ ++ S ++ I D+ Sbjct: 119 IGEVPSVFERKYTYYVFKKPDVDVMKQAALLLVGKHDFKNFSTVK-KSKSTVKEIYDIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I+I + A FLH R +G+L +G G ++E + + + Sbjct: 178 YTDDEEIQITLHANDFLHNMARMVIGTLIDIGLGNRKKEEIEDIFNPESSVQASSPCDAK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVLY 246 >gi|34762680|ref|ZP_00143671.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887637|gb|EAA24715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A + Y I Sbjct: 64 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNA--KMREYVYIISWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + + + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFG 179 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG+ + G+ + L ++ L EGLY Sbjct: 180 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLNDFTKEYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKISY 245 >gi|311896534|dbj|BAJ28942.1| putative tRNA pseudouridine synthase A [Kitasatospora setae KM-6054] Length = 302 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 78/257 (30%), Positives = 110/257 (42%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW RQ+ ++QG +E A+ +V E + AGRTD+GVHA Sbjct: 20 TRIRLDLAYHGAEFSGWARQRERRTVQGELEDALRIVLRSEENFPLTVAGRTDAGVHARG 79 Query: 60 QVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL K L + + ++ F ARF+AI R Y YR+ Sbjct: 80 QVAHVDLPDALWAQHGEKLLRRLAGRLPADVRVYRVAEAPHGFDARFAAIWRRYAYRVAD 139 Query: 119 RQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--------SPI 169 L +G + LD E M AA+ LVG HDF + A+ Sbjct: 140 HPGGVDPLLRGHVLWHDRPLDLEKMNEAARLLVGEHDFAAYCKKREGATTIRTLLELHWE 199 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R G+L V A +F H +R+ VG++ LVGDG K L R Sbjct: 200 RVPIDPYAAQEGSLAVATVRADAFCHNMVRALVGAMLLVGDGHRPVEFPGKVLAGGVRDS 259 Query: 230 CGPLAPPEGLYFDSVEY 246 + P GL + V Y Sbjct: 260 AVNVIRPHGLTLEEVGY 276 >gi|325282723|ref|YP_004255264.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] gi|324314532|gb|ADY25647.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP] Length = 294 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 84/248 (33%), Positives = 121/248 (48%), Gaps = 3/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + ++GS Y GWQ Q N S+Q ++ A+ + E AGRTD+GVHAL Sbjct: 31 TRVLLTVAWDGSAYGGWQSQPNAPSVQDTLHAALNRLGLEAARPVAAGRTDAGVHALNMP 90 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 AH DL AL ++ ++++L+ FHARFS +R YLY+I+ A Sbjct: 91 AHVDL-HAPRIPPERLALALARQLPRSVAVLSAQAAPAGFHARFSCTQRRYLYQILNAPA 149 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNS 179 LE+GR+ + LD M AAQHL+G HDF F + R Sbjct: 150 RHPLEEGRSLWVRGQLDLSAMNAAAQHLIGLHDFAAFATKEDRQTVRELQRLAVTASPLP 209 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +G + + VV SFL +R VG+L VG GK + + L + DR++ G P+GL Sbjct: 210 YGQRVTLAVVGESFLRHMVRGLVGTLIAVGQGKLAPEAVAEILASGDRRQAGINVAPDGL 269 Query: 240 YFDSVEYS 247 YF Y+ Sbjct: 270 YFAGAGYA 277 >gi|33866624|ref|NP_898183.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] gi|42559753|sp|Q7TTT1|TRUA_SYNPX RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|33633402|emb|CAE08607.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 8102] Length = 299 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+NG+S+Q +E AI + + AGRTD+GVHA Q Sbjct: 16 RRIALSLQYEGSAFCGWQRQRNGNSVQAQLEAAIEQLDPYRPIQTFAAGRTDTGVHAAGQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD P ALN L TI + + K +HA +SA R Y Y I + Sbjct: 76 VVHFDCGDRIPPAKWAPALNGRL--PFTIRVRESVLRPKDWHACYSATYRRYRYTIHNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD MR A ++G HDF+ F + + T+ D+ Sbjct: 134 RPNLFLAPWSWHRYQLRLDESRMRDALNGMLGLHDFSAFMRAGSRRAHARTTVQEVDLVR 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+++ + + A FL+ +R + L VG+ + + D E+ + + R E AP GL Sbjct: 194 QGDMVRVEIQASGFLYGMVRLLIAQLVAVGEHRLSVQDFEQRWRQRRRHEVREAAPGHGL 253 Query: 240 YFDSVEY 246 Y Sbjct: 254 CLLRAGY 260 >gi|311744771|ref|ZP_07718567.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] gi|311311888|gb|EFQ81809.1| tRNA pseudouridine synthase A [Aeromicrobium marinum DSM 15272] Length = 262 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 113/248 (45%), Gaps = 8/248 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++QG IE A+ + + AGRTD+GVHA Sbjct: 1 MRLRIDLAYDGTDFRGWAVQPGQRTVQGVIESALGTMLRLDPTPTLTCAGRTDAGVHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL + + L YL D I I ++ F ARF+A R Y+YR+ Sbjct: 61 QVAHVDLDTHPGVL--ERRLRRYL--PDDIRIKSVVEAPPGFDARFAATERRYVYRMTDH 116 Query: 120 QAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 A R + + M AA+HL+G+HDF F A++ IRT+ Sbjct: 117 PAGPDPLARRMIVHHPRPLSVDLMNAAAEHLLGQHDFAAFCKKRAGATT-IRTLLALRTI 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G I V A +F H +RS +G L VG+ ++ + L + R + P G Sbjct: 176 RGGETIATTVRADAFCHAMVRSLMGCLVAVGERRFPPEFAAEVLSGRVRDGRVKVMEPHG 235 Query: 239 LYFDSVEY 246 L + V Y Sbjct: 236 LVLEEVSY 243 >gi|188997613|ref|YP_001931864.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] gi|188932680|gb|ACD67310.1| tRNA pseudouridine synthase A [Sulfurihydrogenibium sp. YO3AOP1] Length = 243 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 116/245 (47%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y G+ Y GWQRQKNG IQ IE + + E + + GAGRTD+GVHALRQV Sbjct: 4 KNYKLEISYIGTNYNGWQRQKNGIGIQQVIEDLLSELLEEKITLIGAGRTDAGVHALRQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A+F + + LNA L ISIL + V F+ARFSA ++YLY+I T+ Sbjct: 64 ANFKTKKHKNTKTIYTYLNAKL--PRDISILKVEEVPLSFNARFSAKGKTYLYKINTK-- 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P AW K LD M + D ++ I + + G Sbjct: 120 PDPFLFKLAWYYDKKLDLIKMVEGINLIKQYKDLSSLAKAGDYIRKEI-DLRELKLYFDG 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +I I + A FL +R G L +G G + +L+ ++ + APPEGLY Sbjct: 179 KIITIEITASHFLRNMVRRIAGHLVALGRGSLSLEELKDIIEKKSPSHGKFTAPPEGLYL 238 Query: 242 DSVEY 246 +V Y Sbjct: 239 KAVYY 243 >gi|42559799|sp|Q83G11|TRUA_TROWT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 267 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 4 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVVAARTDAGVHALQQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 64 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 123 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L MR AA L+G DF F S+ + Sbjct: 124 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMGSTVRHLRQFEVIRQP 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 184 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LIGIDY 249 >gi|242243978|ref|ZP_04798421.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] gi|242232611|gb|EES34923.1| tRNA pseudouridine synthase A [Staphylococcus epidermidis W23144] Length = 267 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 2/244 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y G+ + G+Q Q+ G ++Q EK + + V +H + RTD GVHA +Q Sbjct: 1 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HFD A+N L D I + N+ VD+ FH R+ + + Y Y++ Sbjct: 61 FHFDTELNIDNKQWQYAMNRAL--PDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNH 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + G + ++LD + M AAQ +G HDFT F S + S +RT+ + + Sbjct: 119 RNPFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSKIVATK 178 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + V FL+ +R V L VG GK D+ K L+ ++R APP+GLY Sbjct: 179 EGFDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYL 238 Query: 242 DSVE 245 + + Sbjct: 239 EKIY 242 >gi|269796221|ref|YP_003315676.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] gi|269098406|gb|ACZ22842.1| pseudouridylate synthase I [Sanguibacter keddieii DSM 10542] Length = 287 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 14/258 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y G+ + GW Q ++QG++E+ + V + AGRTD+GVH+ QV Sbjct: 6 RIRLDVSYRGTDFAGWAVQPGLRTVQGTLEEGLARVLRADTRLTVAGRTDAGVHSRGQVT 65 Query: 63 HFDLVREWVPVILCKALN----AYLKI-----SDTISILNLSIVDKQFHARFSAIRRSYL 113 H D+ RE + + A L + + +S+ F ARFSA+ R Y Sbjct: 66 HLDVPREVWDTVSGRGHRTGEQALLSRMTGVLPTDVVVRAVSVAPPGFDARFSALSRRYR 125 Query: 114 YRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-- 170 YRI+ R A L + LD + M+ A Q LVG DF F A++ Sbjct: 126 YRIVDRHALRDPLRADWVLWSKRPLDVDAMQAAVQPLVGVRDFKAFCRPRPGATTIRHLQ 185 Query: 171 --TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T + D L+ V + +F H +R+ VG+ VG G+ + L+ +R Sbjct: 186 ELTWERVDGGPDDGLVVASVRSDAFCHNMVRALVGASMAVGHGQRPVGWPAEVLRRGERD 245 Query: 229 ECGPLAPPEGLYFDSVEY 246 + PP GL + VEY Sbjct: 246 PLAGVVPPHGLTLEEVEY 263 >gi|12045035|ref|NP_072845.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|255660331|ref|ZP_05405740.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|1351308|sp|P47428|TRUA_MYCGE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3844778|gb|AAC71401.1| tRNA pseudouridine synthase A [Mycoplasma genitalium G37] gi|166078658|gb|ABY79276.1| tRNA pseudouridine synthase A [synthetic Mycoplasma genitalium JCVI-1.0] Length = 244 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 4/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+GS + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D+ E +L + +N +K + L L V+ FHARF + Y Y +I Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIVKTLVL--VNDSFHARFQVKTKVYEY-LINCG 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L+ W + + LD E ++ A +G+ +F +F S S Sbjct: 118 NLNPLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSF-SSSIHTDSIRTISKITIQKET 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + FL +Q+R V L + K + K + + C AP GLY Sbjct: 177 NQLVRLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLY 236 Query: 241 FDSVEY 246 +V Y Sbjct: 237 LKTVVY 242 >gi|257066904|ref|YP_003153160.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] gi|256798784|gb|ACV29439.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548] Length = 246 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 103/248 (41%), Gaps = 4/248 (1%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 MIR + Y+G+ + G+Q QK+ S++ + AI VTGE + GRTDSGVHA Sbjct: 1 MIRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARS 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +F P + +L D I L+ V FHARFS + Y Y I Sbjct: 61 HFVNFLTASNISPKAFSFHIQPHL--PDDILALSSKEVSLDFHARFSCKSKLYKYVIYRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + + I LD + + + L R + +R ID Sbjct: 119 RLMYPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + I SFLH Q+R VGSL + G+ + D K + K P +G Sbjct: 179 EEGDDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQG 238 Query: 239 LYFDSVEY 246 LY VE+ Sbjct: 239 LYLRRVEF 246 >gi|124516114|gb|EAY57622.1| Pseudouridylate synthase [Leptospirillum rubarum] Length = 268 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 116/253 (45%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MPRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT- 118 V H D+ W P L + LN +L S I IL + V FHAR +R+ Y YR ++ Sbjct: 61 VFHCDIAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSL 118 Query: 119 ---RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E + +D ++ A + L G +DFT F R+ID Sbjct: 119 SRKAREVPPTEDPFCGIFFPPVDWTLLQQATKLLEGANDFTRFTVQKSCPEDARRSIDAI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGPL 233 + N +++ V R FLH IR +L G K T + L Sbjct: 179 QWIAGPNTLDLWVAGRGFLHMMIRYLAMALLETGQQKRTLKSFQDLLLPGSLPPVPALHP 238 Query: 234 APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 239 APPQGLSLMRVFY 251 >gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5] gi|14548295|sp|Q9UZZ3|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5] Length = 263 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 108/246 (43%), Gaps = 24/246 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R I Y+G+ + G+QRQ N +++G I KA+ A RTD GV AL V Sbjct: 1 MRVAFKIAYDGTRFHGFQRQPNLRTVEGEIIKALNNSGIMYSDFKSASRTDRGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + LNA L+ + IL+ V + FH RF A + Y Y + + Sbjct: 61 VAITTEDEKALNPMV--LNARLE---DVWILSAIEVPQDFHPRFWAKSKVYRYYLPSIGL 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K + L D +R+ID +V + G Sbjct: 116 EVEKVKECSQLFLGVHDFSAF------------------SRVDGRDTVRSIDRIEVFTLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I + A+SFL +R V +L+L G G+ + ++++ L+ + ++ + P APPEGL Sbjct: 158 PILIIEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLEGKFEKSKKVPPAPPEGLL 217 Query: 241 FDSVEY 246 ++Y Sbjct: 218 LVDIKY 223 >gi|237741391|ref|ZP_04571872.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] gi|229430923|gb|EEO41135.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13] Length = 245 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHANHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 64 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYII--SWK 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + + + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFG 179 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG+ + G+ + L ++ L EGLY Sbjct: 180 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKISY 245 >gi|251772807|gb|EES53368.1| Pseudouridylate synthase [Leptospirillum ferrodiazotrophum] Length = 294 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 103/256 (40%), Gaps = 17/256 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ Y+G + GWQ Q N ++QG++ +A+ + V V G+GRTD+GV A QV Sbjct: 12 RRIALLLAYDGRDFSGWQVQPNRWTVQGTLGEALATLCRAPVGVTGSGRTDAGVSAWGQV 71 Query: 62 AHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH DL L + LN L S + V FHAR SA + Y Y Sbjct: 72 AHADLPEGFSIPVDRLPRILNTRLPGSLRVLDCRS--VSSSFHARHSARGKIYRYVFRHL 129 Query: 120 Q---APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L + +P + R A+ +G HDF F R ID Sbjct: 130 PASLSHHPLATPFSAPLPPNFFLPRAREASTFFLGTHDFRHFSVASSLPDDSTRRIDGIL 189 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA-- 234 + + V FLH +R G L G+G+ ++ L RK P Sbjct: 190 WEERCAELILWVTGPGFLHKMVRMIGGYLLEAGEGRRPLEEIPALL----RKGAPPPFRA 245 Query: 235 ----PPEGLYFDSVEY 246 PP+GL V Y Sbjct: 246 VEPLPPDGLALARVLY 261 >gi|120402449|ref|YP_952278.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] gi|119955267|gb|ABM12272.1| tRNA pseudouridine synthase A [Mycobacterium vanbaalenii PYR-1] Length = 299 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 103/259 (39%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G+I+ A+ V VV AGRTDSGVHA QV Sbjct: 21 VRLRLDIAYDGTDFAGWATQAGQRTVAGAIDDALSTVFRTPVVTRAAGRTDSGVHATGQV 80 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L L + + + Sbjct: 81 AHVDVPADALPYAYPRTTRPGEAEFGPLVRRLGRMLPEDVRVREITRAAPGFDARFSALR 140 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y E P+ LD M AA+ LVG HDF F A++ Sbjct: 141 RHYLYRLSTA-PYGVEPAEARFVTPWPRPLDVAAMAAAARELVGLHDFAAFCRHRDGATT 199 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D G+ +E+ V A +F +RS VG+L VG+ + + L A R Sbjct: 200 -IRELQRLDCVRDGDRVEVHVSADAFCWNMVRSLVGALLAVGEHRRDAAWCAALLDATGR 258 Query: 228 KECGPLAPPEGLYFDSVEY 246 AP GL V+Y Sbjct: 259 SSDFAAAPARGLTLVGVDY 277 >gi|148243240|ref|YP_001228397.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] gi|147851550|emb|CAK29044.1| tRNA pseudouridine synthase A [Synechococcus sp. RCC307] Length = 291 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 111/253 (43%), Gaps = 10/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVV-------HGAGRTDSG 54 R + ++Y+G + GWQRQ S+Q S+++AI + + AGRTD+G Sbjct: 4 QRIALCLQYDGGPFCGWQRQPQHRSVQQSLDEAIEALDPLPAGIAAKLSRTIAAGRTDTG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VHA QV HFD ALN L +I + + V +HA FSA R Y Y Sbjct: 64 VHAAAQVVHFDCHGPIPAARWAPALNGRL--PGSIRVRASAAVAANWHACFSATYRRYRY 121 Query: 115 RIITRQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 I + P L M+ Q L+G HDF+ F+ Q + T+ Sbjct: 122 CIYNARRPNLFLSPFSWHRYQWRLQDHLMQELLQELLGHHDFSAFQRAGSQRAHARTTVQ 181 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + G+++ + + A FL+ +R VG L G+G+ + + + Q R E Sbjct: 182 EVSLQREGDILTLEIQASGFLYGMVRLLVGQLVAAGEGRISPEQFRQRWREQRRDEVKEA 241 Query: 234 APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 242 APPQGLCLLRVGY 254 >gi|296329175|ref|ZP_06871676.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153531|gb|EFG94348.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 247 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ N ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 6 KNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 66 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYII--SWE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + E + +G HDF FR C + +R I +V FG Sbjct: 122 KNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFG 181 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG+ + G+ + L ++ L EGLY Sbjct: 182 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLY 241 Query: 241 FDSVEY 246 + +EY Sbjct: 242 LNKIEY 247 >gi|294784150|ref|ZP_06749451.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] gi|294488220|gb|EFG35565.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ + ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPDKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAYHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 64 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKIREYIYII--SWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + + + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFG 179 Query: 182 NLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +FL +Q+R VG+ + G+ + L ++ L EGLY Sbjct: 180 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKISY 245 >gi|206602902|gb|EDZ39382.1| Pseudouridylate synthase [Leptospirillum sp. Group II '5-way CG'] Length = 268 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 79/253 (31%), Positives = 114/253 (45%), Gaps = 9/253 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ ++ Y+G G+ GWQ Q G+++Q IE+A +T + V + G+GRTD+GV A Q Sbjct: 1 MQRFAFVVSYDGRGFQGWQSQIRGNAVQDHIEEAFCRLTRQDVRISGSGRTDTGVSAAGQ 60 Query: 61 VAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W P L + LN +L S I IL + V FHAR +R+ Y YR ++R Sbjct: 61 VFHCDLAGPGWTPDSLSRGLNHFL--SPAIRILQAAAVAPDFHARHDVVRKIYRYRWVSR 118 Query: 120 QAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E + ++ A + L G +DFT F RTID Sbjct: 119 SRKMREVGPTEDPFCGTFLPPVHWTLLQQATKLLEGSNDFTRFTVQKSCPEDARRTIDAI 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGPL 233 + +++ V R FLH IR +L G K + + L Sbjct: 179 QWIAGPYTLDLWVAGRGFLHMMIRYLAMALLETGQQKRSLKSFQDLLLTGSLPPVPALHP 238 Query: 234 APPEGLYFDSVEY 246 APP+GL V Y Sbjct: 239 APPQGLSLVRVLY 251 >gi|28572394|ref|NP_789174.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] gi|42559794|sp|Q820Z2|TRUA_TROW8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|28410525|emb|CAD66911.1| tRNA pseudouridine synthase A [Tropheryma whipplei TW08/27] Length = 267 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 112/246 (45%), Gaps = 1/246 (0%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ + GW Q ++ G I A+ L+ E + A RTD+GVHAL+QV Sbjct: 4 TRYRLDVAYDGANFCGWAPQPGLRTVGGLILDALRLICSEPPDIVIAARTDAGVHALQQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H DL+ PV L L + LK + IL+ FHARFSAI R Y+YR+I +++ Sbjct: 64 CHVDLISSPDPVWLLHRLRSLLKSETDLHILSAVKAPVNFHARFSAIGRRYVYRVIDKRS 123 Query: 122 PLALEKGRAWLIPK-SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L MR AA L+G DF F S+ + Sbjct: 124 SWYPQNRYFVYRVNAFLQDYRMRRAASGLIGLKDFGAFCKPRRMGSTVRHLRQFEVIRQP 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +F H+ +R+ VGSL VG G T DL + R P PP L Sbjct: 184 DGQIHFFLESDAFCHSMVRNLVGSLIEVGRGALTLQDLFCYTKIAKRTPKIPTLPPHALT 243 Query: 241 FDSVEY 246 ++Y Sbjct: 244 LIGIDY 249 >gi|292557750|gb|ADE30751.1| tRNA pseudouridine synthase [Streptococcus suis GZ1] Length = 222 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-TGEIVVVHGAGRTDSGVHALR 59 M RY II Y+G + G+QRQ + ++Q IEK + + +G+ V VHGAGRTD+GVHA Sbjct: 1 MTRYKAIISYDGHDFSGFQRQPHARTVQEEIEKTLVRLNSGQPVTVHGAGRTDAGVHAYG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL L AL+ + S+ I ++++ V FH R++ ++Y + + Sbjct: 61 QVIHFDLAGSRDVEKLRFALDT--QTSEDIDVVSVEQVADDFHCRYAKHSKTYEFLVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDV 177 + + + A P LD + A Q LVG HDFT F + +RTI + Sbjct: 119 RPKNPMMRHYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTITVASMEY 178 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + FL+ Q+R+ VG+L +G+G+ ++ Sbjct: 179 DQQRQFLIFTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIK 220 >gi|269218953|ref|ZP_06162807.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] gi|269212064|gb|EEZ78404.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str. F0332] Length = 310 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 19/263 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + Y+G+ + GW Q +++G++ +A+ L+TG + AGRTD+GVHA QV Sbjct: 7 HRLRLRMSYDGTDFHGWAVQPGLRTVEGTVTEALNLITGGSHALTVAGRTDAGVHARGQV 66 Query: 62 AHFDLVRE----------WVPVILCKALNAYLKI-------SDTISILNLSIVDKQFHAR 104 AH D+ + + L+A L S +++ + F AR Sbjct: 67 AHVDVSENELARAARRAGDPCQAIMRRLSALLARESPGPKGSSDVAVTGVDFAPAGFDAR 126 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 FSA+ R+Y YR+ A + R + + LD E M AA+ L G HDF ++ Sbjct: 127 FSALSRTYSYRVCDDPARFDPLRRRDVLWLREPLDVEAMGAAARKLTGEHDFISYCKPRE 186 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 A++ IR + V G L+E+ A +F H+ +R+ VGSL VG G+ + L+ Sbjct: 187 GATT-IRELLELKVERKGGLVEVTARADAFCHSMVRTLVGSLLKVGAGRRDEEWPARRLE 245 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + R +APP L +SVEY Sbjct: 246 ERSRNGEVAVAPPHPLTLESVEY 268 >gi|301165600|emb|CBW25171.1| tRNA pseudouridine synthase A [Bacteriovorax marinus SJ] Length = 256 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 122/258 (47%), Gaps = 14/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 M Y +I+ Y G+ Y GWQ+Q + +IQG +EKA+ ++ + + G+GRTDSGVHAL Sbjct: 1 MSFYKIILRYKGTQYQGWQKQPHTSQTIQGQLEKALKKISKSDEIHTIGSGRTDSGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV + E P+ L KALN++L + I ++ + F+ F A ++Y Y Sbjct: 61 GQVVRVQIPLELEPLSLLKALNSHL--PNDIECIHSENSSELFNPVFDAKDKTYKYLFSL 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 AL + + +D E MR A + +G HDF F ++ SS +R I ++ Sbjct: 119 NGRRNALVDDSMTCLDRPMDIEKMREACELFIGEHDFADFYTVGTDISSTVRVIYDCKLH 178 Query: 179 ----------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + V FL +R VG+L +G GK DL+ AL + Sbjct: 179 LEKQQGFLGEVYPEHYIFEVKGSGFLKQMVRLMVGTLWNIGLGKVELADLKMALNSPSGA 238 Query: 229 ECGPLAPPEGLYFDSVEY 246 + +AP GLY V Y Sbjct: 239 KLAAVAPSNGLYLCEVNY 256 >gi|145225544|ref|YP_001136222.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] gi|145218030|gb|ABP47434.1| tRNA pseudouridine synthase A [Mycobacterium gilvum PYR-GCK] Length = 298 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 90/259 (34%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I+ A+ V V+ AGRTDSGVHA QV Sbjct: 20 VRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPVLTRAAGRTDSGVHATGQV 79 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L L + + + Sbjct: 80 AHADIPTDALPHAYPRTVRAGEPEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSALR 139 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y A + A L R + Sbjct: 140 RHYVYRLTTAPYGVEPAEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAFCRHRDGATT- 198 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ R Sbjct: 199 -IRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHARHR 257 Query: 228 KECGPLAPPEGLYFDSVEY 246 AP GL V+Y Sbjct: 258 SSDFAAAPARGLTLVGVDY 276 >gi|94495734|ref|ZP_01302314.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] gi|94425122|gb|EAT10143.1| tRNA pseudouridine synthase A [Sphingomonas sp. SKA58] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 122/246 (49%), Positives = 159/246 (64%), Gaps = 1/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +E++G + GWQRQ +G S+Q +IE AI VTGE V+H AGRTD+GVH L Sbjct: 1 MPRFAFTVEFDGRPFMGWQRQAHGPSVQQTIEDAIAAVTGEAAVIHAAGRTDAGVHGLAM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 AH D+ + P L +A+NA ++ + + ++ D +HARFS RSY+YRI R+ Sbjct: 61 RAHADIAKNIAPFRLMEAINARMRPAPVAILACETVAD-DWHARFSCTGRSYVYRIANRR 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 APL + G W + + LD + M+ AAQHLVGRHDFTTFRS HCQA SP++T+D DV Sbjct: 120 APLTFDAGLVWRVVQPLDADAMQAAAQHLVGRHDFTTFRSAHCQAHSPLKTLDRLDVERQ 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ I I ARSFLH Q+RS VG L +VG G WT+ DL AL A+DR G APP+GLY Sbjct: 180 GDRIAIHAAARSFLHHQVRSMVGCLAMVGMGHWTANDLRDALAARDRAALGLNAPPDGLY 239 Query: 241 FDSVEY 246 F Y Sbjct: 240 FVRATY 245 >gi|320333111|ref|YP_004169822.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] gi|319754400|gb|ADV66157.1| tRNA pseudouridine synthase A [Deinococcus maricopensis DSM 21211] Length = 266 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + ++++G+ + GWQ Q N S+Q + A + + AGRTD+GVHA Sbjct: 13 VRYRLTVQWDGTHFAGWQSQPNARSVQDDLHAAFKALGMQAFRPVAAGRTDAGVHAEAMP 72 Query: 62 AHFD-LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H D L A + +++L+ + FHARFS R+Y YR++ Sbjct: 73 VHVDALSASARIPAARLARALNAHLPTDVAVLDAAPAPAHFHARFSCTERAYSYRVLNAP 132 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L GRA L+ LD M++AA L+G HDF F + + + R + +V Sbjct: 133 QRQPLWAGRALLVHAPLDVAAMQVAATQLLGEHDFAAFATREERQTV--RRLHALEVRPV 190 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G L+E+ V SFL +R VG+L +VG+G+ ++D+ L + R GP PP GLY Sbjct: 191 GPLLEVHVRGESFLRHMVRGIVGTLLMVGEGRLGASDVAGILVGRARSGAGPNVPPHGLY 250 Query: 241 FDSVEYS 247 F Y+ Sbjct: 251 FTDASYA 257 >gi|227485306|ref|ZP_03915622.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] gi|227236766|gb|EEI86781.1| tRNA-pseudouridine synthase I [Anaerococcus lactolyticus ATCC 51172] Length = 246 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 3/246 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + ++G + G+Q Q + S++ + KAI VTGE + GRTD+GVHA Sbjct: 3 KNVLLKLAFDGRDFKGYQYQIDQRSVEEELRKAIKEVTGEDNRIIACGRTDAGVHARSFY 62 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F + P + +L D I L+ V FHARFS ++Y Y I + Sbjct: 63 INFLTACDVNPKGFAYHIQPHL--PDDILALSSKEVGLDFHARFSCKSKTYKYIINQEKN 120 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 P + + I LD + + + L + + R ID Sbjct: 121 PHPIYRSYMENITYRLDYDKLDEGLEILKGDHDFRLFMKEDKNIDINTNRRIDDCYFKRG 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +E+ A SFLH Q+R GSL + GK + D + +K P P GLY Sbjct: 181 ETRLELYFKAESFLHNQVRIMTGSLIELARGKLSLDDFKAYFDPATKKRANPALSPVGLY 240 Query: 241 FDSVEY 246 VEY Sbjct: 241 LWEVEY 246 >gi|94984145|ref|YP_603509.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] gi|94554426|gb|ABF44340.1| tRNA pseudouridine synthase A [Deinococcus geothermalis DSM 11300] Length = 266 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 7/250 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R +++ ++G+ + GWQ Q++ S+Q ++ A+ +T E AGRTD+GVHA Sbjct: 14 RRLRLLLAWDGTDFAGWQAQRDVPSVQDTLYAALLRLTEEAARPVAAGRTDAGVHAEAMP 73 Query: 62 AHFDLVREWVPVILC--KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AH D+ + + +ALNA+L ++++L FHARFS R Y YR++ Sbjct: 74 AHVDVPQSFRIPAKKLARALNAHL--PPSVAVLEAEEAPTGFHARFSCTERRYTYRLLNT 131 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L +GRA +P +LD M AA L+G HDF F + + + Sbjct: 132 PQRHPLWRGRALHVPGALDVPAMNAAAACLLGTHDFAAFATREDRQTVRELRALAVHPGP 191 Query: 180 FGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + E+RV SFL +R VG+L LVG GK D+ L ++R G P Sbjct: 192 VVPGGRIWEVRVAGESFLRQMVRGLVGTLLLVGQGKLGQEDVTAVLVGRERARAGANVPG 251 Query: 237 EGLYFDSVEY 246 GL F Y Sbjct: 252 YGLTFTGASY 261 >gi|289641136|ref|ZP_06473304.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] gi|289509077|gb|EFD30008.1| tRNA pseudouridine synthase A [Frankia symbiont of Datisca glomerata] Length = 279 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 109/243 (44%), Gaps = 7/243 (2%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLV 67 Y+G+ + GW RQ ++QG +E A+ V V + AGRTD+GVHA QVAH D+ Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDAGVHARGQVAHVDIP 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALE 126 + L + LN L + I L+ F ARFSA+ R Y+YRI L Sbjct: 75 DDVPLGGLARRLNGVL--DRAVRITALAPAPPGFDARFSALSRRYVYRIGDAPYGVDPLR 132 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI---RTIDHFDVNSFGNL 183 + P+ LD E M AA LVG DF F A++ R + + Sbjct: 133 RHDTLAWPRPLDAERMADAALALVGERDFAAFCRRREGATTVRTLLRLDVARVPDGHDGV 192 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V A +F H+ +R+ VG+L VG+G+ L R +A P GL Sbjct: 193 VVADVEADAFCHSMVRALVGALLAVGEGRRPHHWPADVLARGVRDPAVTVAAPHGLTLVE 252 Query: 244 VEY 246 V Y Sbjct: 253 VRY 255 >gi|113954813|ref|YP_729642.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] gi|113882164|gb|ABI47122.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9311] Length = 299 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 109/249 (43%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 R + ++Y GS + GWQRQ G S+Q +EKAI + + AGRTDSGVHA Sbjct: 18 QRIAICLQYEGSFFCGWQRQTQGRGQSVQAVLEKAIAALDPHRPIKAIAAGRTDSGVHAS 77 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD ALN L I + +HA +SA R Y Y I Sbjct: 78 GQVVHFDCSGPIPASRWAPALNGRL--PACIRVREAIERPLSWHACYSASYRRYRYTIYN 135 Query: 119 RQAPLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P K LD + M A L+G HDF F+ + S TI ++ Sbjct: 136 GRRPNLFLAPWSWHRYHKRLDEQAMAQALAGLMGEHDFAAFQRAGSRRSHSRTTIQDVNI 195 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+L+ + + A FL+ +R +G L VG+ + T E+ Q + R E APP Sbjct: 196 ERDGDLLSVEIQASGFLYGMVRLLMGQLIAVGEHRLTPQQFEQRWQERRRDEVREAAPPH 255 Query: 238 GLYFDSVEY 246 GL Y Sbjct: 256 GLCLLRAGY 264 >gi|311111942|ref|YP_003983164.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] gi|310943436|gb|ADP39730.1| tRNA pseudouridine synthase A [Rothia dentocariosa ATCC 17931] Length = 327 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 113/278 (40%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y G+ + GW RQ N ++QG +E A+ LV V AGRTD+GVHA Q Sbjct: 33 QRVRIDCAYEGTWFSGWARQPNLVTVQGVLEDALELVLRAHHRVTVAGRTDAGVHAQAQT 92 Query: 62 AHFDLVREWVPVILCK---------------------------------ALNAYLKISDT 88 H D+ E + + + L+ S Sbjct: 93 IHLDIAAETWQKLTGRDGLADPAESLKRKVSGALKRTLAQAEHTLGIPERMRGLLQGSLV 152 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + + D + R +Y +P L + AW IP+SLD E++ AA Sbjct: 153 LHQVQPVPQDFDARFSATGRRYTYRILDGQGSSPDPLRRAYAWCIPESLDLEDLNKAAHE 212 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L G HDF +F A++ + +IE V A +F H +RS +G+L L Sbjct: 213 LTGLHDFLSFCKPREGATTIRELRRIYLTRHDDGVIEATVEADAFCHHMVRSLIGALVLY 272 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK T T L + L+ R +APP GL ++Y Sbjct: 273 GTGKRTQTWLRERLENPQRDASLIMAPPHGLALAHIDY 310 >gi|269955466|ref|YP_003325255.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] gi|269304147|gb|ACZ29697.1| tRNA pseudouridine synthase A [Xylanimonas cellulosilytica DSM 15894] Length = 293 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 20/266 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHGAGRTDSG 54 M+R + + Y+G+ + GW RQ ++QG +E + + + AGRTD+G Sbjct: 1 MVRVRLDLAYDGTQFAGWARQPALRTVQGVLEDGLEQIVRTAPRGLPAPRLTVAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QVAH DL E + + +L L + + ++ F ARF Sbjct: 61 VHARGQVAHVDLPVERWVALPGRSDREPGESLVTRLTGVLPPDVVVHRAALAPAGFDARF 120 Query: 106 SAIRRSYLYRI-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y +RI A L + + LD M A Q L G DF + Sbjct: 121 SALYRRYAFRIADDAAARDPLHRAHVLWHRRPLDVAAMHDAVQPLRGVRDFAAYCKPRPG 180 Query: 165 ASSPIRTIDHFDVN----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 A++ + L+ RVVA +F H +R+ VG+ VG+G+ + + Sbjct: 181 ATTIRELKELSWTRPADGPDAGLVVARVVADAFCHNMVRALVGASIAVGEGRKPVSWPAE 240 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L ++ R+ + PP GL + V Y Sbjct: 241 VLASKQRERAAAVVPPRGLTLEEVVY 266 >gi|262203538|ref|YP_003274746.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] gi|262086885|gb|ACY22853.1| tRNA pseudouridine synthase A [Gordonia bronchialis DSM 43247] Length = 291 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 108/251 (43%), Gaps = 7/251 (2%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y G+ + GW RQ + ++ +E + V V + AGRTD+GVHA QV Sbjct: 16 RLRLDVGYEGTDFAGWARQTDQRTVGAVLEDTLATVLRIPVRLTVAGRTDAGVHATGQVC 75 Query: 63 HFDLVREWVPVILCKALNAYL------KISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 H D+ + + L + D + + ++ V F ARFSA+RR Y YR+ Sbjct: 76 HTDIPVSALQTRSIGGDPSLLVGRLAKMLPDDVRVKEIASVSGDFDARFSALRRHYEYRL 135 Query: 117 IT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 R + + LD + M A+ L+G +DF F A++ Sbjct: 136 TDARWGAEPIHARTTATWRRPLDVDAMNAASASLLGLNDFAAFCRRREGATTIRDLQQFS 195 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 G ++ +V A +F + +RS VG++ VGDG+ L R P+A Sbjct: 196 WTRHAGGVLVGQVSADAFCWSMVRSLVGAVASVGDGRRDIDWCRGLLAETQRSSQVPVAD 255 Query: 236 PEGLYFDSVEY 246 GL V+Y Sbjct: 256 ACGLCLVRVDY 266 >gi|302342258|ref|YP_003806787.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] gi|301638871|gb|ADK84193.1| tRNA pseudouridine synthase A [Desulfarculus baarsii DSM 2075] Length = 279 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 YNG+G+ GWQ Q G +IQG +E+ + + G V + AGRTD+GVHA QVA F Sbjct: 43 YNGAGFAGWQIQARGRTIQGQVERELSRLCGHAVRLWAAGRTDAGVHAFGQVASFQTDSR 102 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 + +AL A L I + L + FHARF A ++Y Y + + P G Sbjct: 103 LEEGRMAQALAAML--PPDIWLRRLGRAPEGFHARFDAAGKTYEYYLWPKARPGVFLDGL 160 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 W + LD E M A L+G D F S + + R + + G +I +R Sbjct: 161 CWPLACDLDMEAMARGAAFLLGEVDLAAFAAHSSEVEGPTVRRISEATVTPAEGGMILVR 220 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + FL +R+ VG+L +G + + + L A R GP APP GLY + Y Sbjct: 221 LSGSGFLRHVVRNVVGTLTQIGQHRLEPEAVGRMLAAGRRIYPGPKAPPGGLYLGQIYY 279 >gi|226227135|ref|YP_002761241.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] gi|226090326|dbj|BAH38771.1| tRNA pseudouridine synthase A [Gemmatimonas aurantiaca T-27] Length = 259 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 6/247 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 ++ +Y+G + GWQRQ + ++QG +E+ + ++G V GAGRTD+GVHA Q Sbjct: 6 ILLVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQGV 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ-A 121 + +W L +A+NA L D I + ++ +FH R+SA R Y Y I T + A Sbjct: 66 GVRMPPQWTAPRLRRAMNALL--PDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELA 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFDVNS 179 + W + + LD E + A L+G H F F H I H Sbjct: 124 SSPFRRRHEWALHRPLDVEALHGEAAELLGEHTFRAFAIAHTAPVDDHHRCIIHHAAWVP 183 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 V A FLH +R VG++ V G+ + + L D + P AP GL Sbjct: 184 REGGWVFEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAHGL 243 Query: 240 YFDSVEY 246 V Y Sbjct: 244 SLREVTY 250 >gi|313816522|gb|EFS54236.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL059PA1] Length = 279 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E I V + + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHF 175 + + LD + + A L+G DF F A++ Sbjct: 119 ESSRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCKHREGATTIRTLLDCHAK 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ + L+ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLPLEEVGY 249 >gi|256846563|ref|ZP_05552020.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] gi|256718332|gb|EEU31888.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2] Length = 245 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 110/246 (44%), Gaps = 5/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y+GS Y+G+QRQ ++QG IEK + +VT E + + AGRTD GVHA QV Sbjct: 4 KNIKIEFRYDGSRYYGFQRQPKKITVQGEIEKILRIVTKEEINLISAGRTDRGVHAYHQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F L L + I IL++ VD+ F+AR +A R Y+Y I Sbjct: 64 SNFYTSSNIPIEKYKYLLTRAL--PNDIDILSVEEVDENFNARHNAKMREYIYII--SWE 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 E + + + E + VG HDF FR C + IR I +V FG Sbjct: 120 KNPFEARYCKFVKEKIVVEKLEKIFSDFVGVHDFKNFRLNDCVSKITIREIYQIEVKYFG 179 Query: 182 NLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +FL +Q+R VG+ + G+ + L ++ L EGLY Sbjct: 180 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLPENHIRLMLTDFTKEYKKNLVEAEGLY 239 Query: 241 FDSVEY 246 + + Y Sbjct: 240 LNKISY 245 >gi|161723265|ref|NP_302320.2| tRNA pseudouridine synthase A [Mycobacterium leprae TN] Length = 320 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 75/258 (29%), Positives = 118/258 (45%), Gaps = 14/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 44 VRLRLDIAYDGTDFAGWAVQAGQRTVAGVLDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 103 Query: 62 AHFDL------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ P L + + +L+++ F ARFSA+R Sbjct: 104 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 163 Query: 110 RSYLYRIITRQAPLALEK-GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + + P+ LD ++M A++ L+G DF F A++ Sbjct: 164 RHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVFCRHRHGATT- 222 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR + + + G LI + A +F + +RS +G+L VGD + T + L R Sbjct: 223 IRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRS 282 Query: 229 ECGPLAPPEGLYFDSVEY 246 AP GL F V+Y Sbjct: 283 SDFTTAPAHGLTFIRVDY 300 >gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] gi|259550478|sp|C6A238|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739] Length = 266 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 27/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ + +++G + K + + + GA RTD GV A Sbjct: 1 MRIALKIAYDGTKFYGFQRQPDLRTVEGELIKVLKKLGIIEDVKEANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ + + + LN +L+ I IL + V + FH RF A + Y Y + Sbjct: 61 LGNVIAFNTAKPELAE--ARILNHHLR---DIWILGKAEVPEDFHPRFWAKNKIYRYYLF 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 D ++ A+ +GRHDF+ F + +R I+ DV Sbjct: 116 DEGI----------------DVIKLKACAEAFLGRHDFSNFARLEEFRKP-VREINRIDV 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S G +I + + +SFL R + +LKL G G + D+E L+ + K+ P APPE Sbjct: 159 FSRGRIIVVEIEGKSFLWEMTRRIITALKLCGLGVLSIGDVELMLKEKVDKKL-PPAPPE 217 Query: 238 GLYFDSVEY 246 L V Y Sbjct: 218 NLVLWEVGY 226 >gi|315445896|ref|YP_004078775.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] gi|315264199|gb|ADU00941.1| pseudouridylate synthase I [Mycobacterium sp. Spyr1] Length = 291 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 90/259 (34%), Gaps = 16/259 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G I+ A+ V ++ AGRTDSGVHA QV Sbjct: 13 VRLRLDIAYDGTDFAGWATQAGQRTVAGVIDDALSTVFRTPMLTRAAGRTDSGVHATGQV 72 Query: 62 AHFDLVREWVPVILC--------------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 AH D+ + +P + L L + + + Sbjct: 73 AHVDIPTDALPHAYPRTVRAGEAEFGPLVRRLGRMLTEDVRVRGIVRAAPGFDARFSALR 132 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + + A L R + Sbjct: 133 RHYVYRLTTAPYGVEPSEARFVTAWPRPLDVDAMAGAAQNVLGLHDFAAFCRHRDGATT- 191 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 IR + D G+ I + V A +F +RS VG+L VG+ + T + L A+ R Sbjct: 192 -IRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGEHRRDDTWCVQLLHARHR 250 Query: 228 KECGPLAPPEGLYFDSVEY 246 AP GL V+Y Sbjct: 251 SSDFAAAPARGLTLVGVDY 269 >gi|330470142|ref|YP_004407885.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] gi|328813113|gb|AEB47285.1| tRNA-pseudouridine synthase i [Verrucosispora maris AB-18-032] Length = 276 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q + ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 VRLRLDVAYDGTDFSGWAAQPDRRTVAGVLVQTLDLVLGAGTATGLTVAGRTDAGVHASG 64 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL E + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPVEVWREHEGRLLRRLARLLPGDVRVRAMTEVPATFDARFSATFRRYEYRVTD 124 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + P+ LD + + A+ LVG HDF + A++ Sbjct: 125 APWGAEPLRRHEVLAWPRPLDTDRLAAASAGLVGEHDFAAYCRRKENATTLREVTRLDWR 184 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 185 RDPDGILVATVQADAFCQAMVRSLVGAMLVAGDGRRPVEWPAGLLTRRERSSEVTVAPAH 244 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 245 GLTLVAVGY 253 >gi|305664970|ref|YP_003861257.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88707800|gb|EAR00040.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 4/219 (1%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q +E AI + + V GAGRTD+GVHA AHFD L +NA+L Sbjct: 2 QEVLENAISKLLRSPISVVGAGRTDAGVHAREMFAHFDFKDSIDSKDLVYRMNAFL--PA 59 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 I++ + +V+ + HARF A R+Y Y I ++ P + RA + +LD + M AA Sbjct: 60 DIAVSQIYLVNGEAHARFDATERTYEYWITQKKNPFYFD--RAHFVKNTLDVKAMNDAAN 117 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 +GR DF F + + + + + + +VA FL +R+ VG+L Sbjct: 118 LFLGRKDFECFSKSNTDVHTYLCDVRKTIWTEEEDKLVFTIVADRFLRNMVRAVVGTLID 177 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG GK + D+++ L+++DR + G P +GLY +EY Sbjct: 178 VGTGKTSLADIQRILESKDRTKAGASVPAKGLYLTKIEY 216 >gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] gi|229470756|sp|B6YTJ2|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1] Length = 267 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVHA 57 +R + I Y+G+ ++G+QRQ +++G I +A+ + E GA RTD GV A Sbjct: 1 MRLALRIAYDGTAFYGFQRQPGLRTVEGEIIRALTKLGIIEDVESSNFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V FD+ ++ + LN +LK + +L + V + FH RF A ++Y Y +I Sbjct: 61 FFNVVAFDVASR-PDLVRPEVLNFHLK---DVWVLGTAEVPEDFHPRFWAKSKTYRYYLI 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 D + MR A+ +G HDF+ F + +P+R + D+ Sbjct: 117 DAGF----------------DEKAMRECAKLFIGTHDFSAFARLE-PHKNPVRELIRADI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + +SFL R V +L+ G G T ++EK L + P A PE Sbjct: 160 IKRQGYYIIELEGKSFLWEMARRIVNALRFCGLGILTEEEVEKMLN-GEYSRKIPPARPE 218 Query: 238 GLYFDSVEY 246 GL +EY Sbjct: 219 GLVLWGIEY 227 >gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3] gi|3915167|sp|O58941|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus horikoshii OT3] Length = 262 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 24/246 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I Y+G+ + G+QRQ N +++G I KA+ + A RTD GV AL V Sbjct: 1 MKVALKIAYDGTKFHGFQRQPNVRTVEGEIIKALNNSGIMFNELKSASRTDKGVSALGNV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 E + + LNA LK + +L+ V FH RF A + Y Y + + Sbjct: 61 VAITTEDERITNPMI--LNAKLK---DVWVLSAVKVPSDFHPRFWARSKVYRYYLPS--- 112 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 LD E ++ ++ +G HDF+ F +R+ID +V G Sbjct: 113 -------------FDLDVEKVKECSKLFLGVHDFSAF--SRVDGRETVRSIDRIEVLDLG 157 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPPEGLY 240 ++ I V A+SFL +R V +L+L G GK +S ++ K L+ + ++ P AP EGL Sbjct: 158 PVLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKMLRGKFEKSRKVPPAPAEGLL 217 Query: 241 FDSVEY 246 V+Y Sbjct: 218 LVEVKY 223 >gi|255533538|ref|YP_003093910.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] gi|255346522|gb|ACU05848.1| tRNA pseudouridine synthase A [Pedobacter heparinus DSM 2366] Length = 269 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I YNG Y GWQ+Q ++QG IE A+ V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYNGLKYNGWQKQPGVMNVQGVIENALSKVLKTPVFIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ ++W ++ + +N L I+I + +D HARF A+ RSY Y I T Sbjct: 61 FHMDVEQDWDFDLVFR-MNKLL--PAGIAIFEVIQMDGLQHARFDAVLRSYDYFIHT-YK 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--VNS 179 L ++ + LD + M+ AA L DF F + + + + V+ Sbjct: 117 DPFLNGLSSFYLLDKLDFDKMKQAAAILPKYKDFRAFCTSPDKYEHTLCNVMSASLAVDE 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + ++ + FL IR +G L +G G + + E L E A P+GL Sbjct: 177 NGDKLRFQISSNRFLSKMIRIIMGQLLKIGRGVLSVDEFEHYLIYNQTPELITPAHPQGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLSKVTY 243 >gi|145596404|ref|YP_001160701.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] gi|145305741|gb|ABP56323.1| tRNA-pseudouridine synthase I [Salinispora tropica CNB-440] Length = 276 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 106/249 (42%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE--IVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q ++ G++ +A+ LV G + AGRTD+GVHA Sbjct: 5 TRVRLDVSYDGADFSGWAVQPERRTVAGALVQALDLVLGVGAATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL+ E + + I ++ F ARFSA R Y YR+ Sbjct: 65 QVCHVDLLTEVWHRHEHTLLRRLARLLPADVRIRAMTEAPDDFDARFSATFRRYEYRVTD 124 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + P LD + +AA LVG HDF + A++ Sbjct: 125 APWGAEPLRRHDTLAWPSRLDLAALNVAADGLVGEHDFAAYCRRKENATTLREVTRLEWR 184 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + V A +F +RS VG++ VGDG+ + L ++R +AP Sbjct: 185 RAPDGTLVATVQADAFCQAMVRSLVGAMLAVGDGRRPADWPAGLLTRRERASEVNVAPAH 244 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 245 GLTLVAVGY 253 >gi|302757930|ref|XP_002962388.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] gi|300169249|gb|EFJ35851.1| hypothetical protein SELMODRAFT_78854 [Selaginella moellendorffii] Length = 268 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 13/255 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ + T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + LN L I + +S FHA+ A + Y Y++ Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRYQYKLFV 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFD 176 L + A+ +P+ LD M A + VG+HDF+TF + +P+R I FD Sbjct: 119 APVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFD 178 Query: 177 VNSFGNLIEIRV--VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG--- 231 + + + F H QIR+ VG + +G G+ + + + L +DR++ Sbjct: 179 LLEQASGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHEARVIPELLAMKDRQKLARVS 238 Query: 232 PLAPPEGLYFDSVEY 246 AP GL SV Y Sbjct: 239 ITAPSRGLTLVSVHY 253 >gi|38233160|ref|NP_938927.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae NCTC 13129] gi|38199419|emb|CAE49063.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae] Length = 295 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 117/258 (45%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 13 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 72 Query: 60 QVAHFDLVREWVPVILCKALNAYLK------ISDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAHFD+ + A L + D + I N+S V +F ARFSA+RR Y+ Sbjct: 73 QVAHFDVDPAALETRSIAGDPARLIRRLARLMPDDVRIHNMSFVPAEFDARFSALRRHYV 132 Query: 114 YRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC----QASSP 168 YR+ T + R P+S+D M+ AA L+G HDF F Sbjct: 133 YRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYREGASTIRDLQ 192 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T L E V A +F + +RS VG+ +VG+GK E L R Sbjct: 193 EFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLGETKRS 252 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+A GL V+Y Sbjct: 253 SSIPVAAACGLSLVGVDY 270 >gi|258651414|ref|YP_003200570.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] gi|258554639|gb|ACV77581.1| tRNA pseudouridine synthase A [Nakamurella multipartita DSM 44233] Length = 305 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 18/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + I Y+G+ + GW Q ++ G + A+ + V + AGRTD+GVHA QV Sbjct: 26 RRLRLDISYDGTDFAGWAIQPGLRTVAGELTSALTTIVRTPVRLVVAGRTDAGVHAAGQV 85 Query: 62 AHFDLVREWVPVILCKALNAY----------------LKISDTISILNLSIVDKQFHARF 105 AH DL + + ++ + + + + + + + F ARF Sbjct: 86 AHVDLPQAALLTVIPRDRADHPDPERAGRLGLLRRLGGLLPPDVRVRAVLAAPEGFDARF 145 Query: 106 SAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+RR Y YRI T ++ + ++LD E M +AAQ LVG HDF F Sbjct: 146 SALRRRYRYRIGTAEWGVEPADRRFVYARRRTLDVEAMTLAAQALVGLHDFHAFCRPREG 205 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A++ IR + V G+ + I VVA +F H+ +R+ VGSL VG+ + + + L A Sbjct: 206 ATT-IRDLQKLTVTRAGDEVRIDVVADAFCHSMVRALVGSLLAVGELRMPTARPAELLAA 264 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 +R +AP GL V+Y Sbjct: 265 GERTSAFAVAPAHGLSLVGVDY 286 >gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro] gi|121729516|sp|Q46CU8|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro] Length = 269 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 25/250 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++G + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEGELFKALRNLGIIESPKSANYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + + +N+ L I + + V F AR A+ R Y Y + Sbjct: 61 LEQVVAFDTD--KLNLAIPRVINSELTPG--IWVWAHAEVPLSFDARRDAVSRHYRYVM- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 K D +R A++ L+G HDF F + S +RTI+ D Sbjct: 116 ---------------SGKEYDISKIREASKFLLGTHDFENFSRTN-GEKSTVRTIERIDA 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI+I VV SFL +R V +L ++G G + L + L + +E AP Sbjct: 160 RIDGELIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWLLQMLNPEIYEEGIESAPAY 219 Query: 238 GLYFDSVEYS 247 GL V Y+ Sbjct: 220 GLTLLKVNYN 229 >gi|42559717|sp|P60349|TRUA_CORDI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 288 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 117/258 (45%), Gaps = 13/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R + + Y+G+ + GW RQ + ++Q IE + LV + + AGRTD+GVHA Sbjct: 6 VRIRLDLAYDGTDFHGWARQGDSDLRTVQKIIEDTLTLVLQRPIDLTVAGRTDAGVHATG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLK------ISDTISILNLSIVDKQFHARFSAIRRSYL 113 QVAHFD+ + A L + D + I N+S V +F ARFSA+RR Y+ Sbjct: 66 QVAHFDVDPAALETRSIAGDPARLIRRLARLMPDDVRIHNMSFVPAEFDARFSALRRHYV 125 Query: 114 YRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC----QASSP 168 YR+ T + R P+S+D M+ AA L+G HDF F Sbjct: 126 YRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAFCKYREGASTIRDLQ 185 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 T L E V A +F + +RS VG+ +VG+GK E L R Sbjct: 186 EFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGEGKRADGFTEHLLGETKRS 245 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+A GL V+Y Sbjct: 246 SSIPVAAACGLSLVGVDY 263 >gi|315452593|ref|YP_004072863.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] gi|315131645|emb|CBY82273.1| tRNA pseudouridine synthase A [Helicobacter felis ATCC 49179] Length = 246 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 98/248 (39%), Gaps = 10/248 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ M++ Y+GS ++G+ +Q N S++G++E A+ + G + AGRTD GVHAL Q Sbjct: 1 MGRFQMLLAYDGSAFYGYAKQPNLPSVEGALESALLKL-GISSPILCAGRTDRGVHALCQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V F L +L I + V FH RF A R Y Y Sbjct: 60 VISFSTPLSLQT------LQRHLPPKLPAPILCKGIQEVPLDFHPRFDATWRLYRYICTN 113 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + A L + F R + T + V Sbjct: 114 IPPSPFLSRFIAHCAYGPLKLIQEALNLFVGTHDFKFFCKRETRHTQRTIHSTKVYQRVL 173 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I I + A SFL Q+R V + GK + DL+ + + R LAPP+G Sbjct: 174 YNHPCIVIAIRAPSFLRAQVRLMVSAALAHSLGKLSLEDLKAQIATRARHHHL-LAPPQG 232 Query: 239 LYFDSVEY 246 LY V Y Sbjct: 233 LYLARVAY 240 >gi|149278992|ref|ZP_01885126.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] gi|149230271|gb|EDM35656.1| tRNA pseudouridine synthase A [Pedobacter sp. BAL39] Length = 267 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + I Y+G Y GWQ+Q ++QG +EK + V V + G GRTD+ VHA + Sbjct: 1 MRYFVHIGYHGLHYNGWQKQPGVLNVQGVLEKTLSQVLKRPVEIIGCGRTDAHVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ W ++ + LN L I++ ++ + HARF A++RSY Y + T Sbjct: 61 FHMDIEEAWDFDLIFR-LNKSL--PTNIAVFDVIPMPGLQHARFDAVQRSYDYFLHT-YK 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--DVNS 179 L+ ++ + K L + M+ AA L DF F + + I + V+ Sbjct: 117 NPFLQGLSSYYLLKDLKFDEMKAAAAILPKYKDFRPFCTSPDKYEHTICNVMSASLTVDP 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ + ++ + FL IR +G L VG G + + E+ L + E A P+GL Sbjct: 177 NGDRMRFQISSNRFLSKMIRIIMGQLLKVGRGVLSVDEFEQYLIDKRTPELITPAHPQGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLSKVTY 243 >gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b] Length = 251 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +Y+GS + G+QRQ ++QG IEK I + + + +GRTD GVHA+ QV Sbjct: 4 RNVKIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F + + + + LN L I IL++ +D++F++RF A R+YLY + Sbjct: 64 SNFMIDQNIPLNAIKRQLNKRL--KGEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDE 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----TIDHFDV 177 E I + +D + + +G+HDF++F +P+R ++D Sbjct: 122 ITPFETNYITGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDK 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I I + FL T +R +GS V GK ++K L+ D LA E Sbjct: 182 NGKEKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSE 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLYKVSY 250 >gi|331085203|ref|ZP_08334289.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407986|gb|EGG87476.1| hypothetical protein HMPREF0987_00592 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 248 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G +++ I + + +T E V + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYL--PMDIAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ + S + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVK-KNKSTEKEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVVY 246 >gi|325661070|ref|ZP_08149697.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472577|gb|EGC75788.1| hypothetical protein HMPREF0490_00430 [Lachnospiraceae bacterium 4_1_37FAA] Length = 248 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+GS Y GWQR G +++ I + + +T E + + RT+ GVHA Sbjct: 1 MRNILLTLEYDGSRYQGWQRLGKGESTNTVSNKILEVLKKMTNEDIELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + +N YL I++L++ ++FHA +A R YLYR+ Sbjct: 61 YGQVVNFKTTTDMTLLEIKHYMNRYL--PMDIAVLSVEEKPERFHASLNAKSRIYLYRVA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P ++ + K D E M+ AA L G+HDF F ++ + S + I + D+ Sbjct: 119 IAEVPSVFDRKYTYHSFKKPDTELMKQAALLLAGKHDFKKFSTVK-KNKSTEKEILNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I+I + A FLH R + +L +G G ++++ P+ Sbjct: 178 YEDLEEIQITLEATDFLHNMPRMILSTLLDIGLGIRRKEEIDEIFSPTSSTVASAPCDPK 237 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 238 GLYLQEVVY 246 >gi|226357340|ref|YP_002787080.1| tRNA-pseudouridine synthase I [Deinococcus deserti VCD115] gi|226319330|gb|ACO47326.1| putative tRNA-pseudouridine synthase I (tRNA pseudouridylate synthase I) (tRNA-uridine isomerase) [Deinococcus deserti VCD115] Length = 266 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 114/247 (46%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + + ++G Y GWQ Q N S+Q ++ A + AGRTD+GVHA Sbjct: 18 RRLRLTLAWDGGPYAGWQSQPNAPSVQDTLHAAFGRLGSGAFRPVAAGRTDAGVHAEAMP 77 Query: 62 AHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 H D+ L +ALNA+L ++S+L FHARFS R Y+YR++ Sbjct: 78 VHVDVPGGFRVPAPKLARALNAWL--PPSVSVLEAFDAPAGFHARFSCTERRYVYRLLVS 135 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L GRA +P +LD M AA +L G HDF F + + + R + V Sbjct: 136 SQRHPLWHGRALHLPGALDAGAMNAAATYLTGTHDFAAFATQEDRQTV--RELRVLRVVP 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + E++V SFL +R VG+L L G GK + L + R + G P GL Sbjct: 194 EGPVWEVQVTGESFLRHMVRGLVGTLLLCGQGKLEPLAVRDVLAHRQRSQAGANVPAYGL 253 Query: 240 YFDSVEY 246 YF Y Sbjct: 254 YFTGASY 260 >gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545] Length = 261 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 73/255 (28%), Positives = 115/255 (45%), Gaps = 14/255 (5%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEI---VVVHGAGRTDSGVHALR 59 Y + + Y+G Y G+Q Q + ++QG +EKA+ +TGE + + +GRTD+GVHA Sbjct: 3 YALTLAYDGENYLGFQYQPRDAKTVQGEVEKALTKITGEDRDFLGIQASGRTDAGVHARG 62 Query: 60 QVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HF R +++N L + ++ FHARF A+R++Y Y + T Sbjct: 63 QVLHFYARRPIEDLARFQRSMNGVL--PRDVRVMKAIRPHPAFHARFHAVRKTYHYYLDT 120 Query: 119 RQAPLALEKGRA-WLIPKSLDCENMRIAAQHL---VGRHDFTTFRSIHCQASSPIRTIDH 174 R + A + D E +R A+ F+ P+RTI Sbjct: 121 RLTMDPFLRRHALHVGWNPPDVEKLRRGAECFVGTRDFSAFSNKPRDKTLVRDPVRTIYR 180 Query: 175 FDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVG-DGKWTSTDLEKALQAQDRKECG 231 FDVN L+ + V F++ Q+R+ VG++ K D+ L+ +DR Sbjct: 181 FDVNELKGDGLLRLEVEGNGFMYKQVRNMVGAMITAATSKKMQPADIAAMLEGKDRGVAP 240 Query: 232 PLAPPEGLYFDSVEY 246 AP GL+ V Y Sbjct: 241 MGAPAHGLFLHDVVY 255 >gi|261415083|ref|YP_003248766.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371539|gb|ACX74284.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325886|gb|ADL25087.1| tRNA pseudouridine synthase A [Fibrobacter succinogenes subsp. succinogenes S85] Length = 250 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 10/251 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 +RY EY GS ++GWQ Q G ++Q ++E+A+ + V G+GRTD+GVH Sbjct: 1 MRYRFRCEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q HFD E P + +++N I I +L F+AR+ A+ R Y Y I Sbjct: 61 ARGQCVHFDFDGELDPQKVVRSVNGL--TKRLIRIRDLEPCASDFNARYDAVLRYYQYTI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 TR L + G +LD E M AQ +G HDF F S + T+ F Sbjct: 119 FTRPVALMRDFG-WECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEFR 177 Query: 177 VNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + FLH Q+R+ VG+L VG G++ + + + ++ K AP Sbjct: 178 LERLNDWSCMFHIKGNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIFE-KNFKGERTWAP 236 Query: 236 PEGLYFDSVEY 246 P+GL ++VEY Sbjct: 237 PQGLVLENVEY 247 >gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304] gi|3915163|sp|O28544|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM 4304] Length = 265 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 23/246 (9%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+++ I Y G + G Q Q + +++G + A+ + E + AGRTD+GVHA Q Sbjct: 1 MMKFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGVENPRLRSAGRTDAGVHAYGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + I + LNA L + I+ + V + F R + R Sbjct: 61 VISFYSEDK----IFPRMLNAEL--PEDITAWAWAKVSEDFDPRRAKSR----------- 103 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D MR A + L+G HDF+ F + S +R I D+ + Sbjct: 104 ------VYTYVMYGSDYDISAMRKAVKELIGVHDFSNFTKKFGEGESCVREIISADIRAD 157 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + +F +R V ++ +G + L + KE APP GL Sbjct: 158 REFIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLI 217 Query: 241 FDSVEY 246 V+Y Sbjct: 218 LKDVKY 223 >gi|227549870|ref|ZP_03979919.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] gi|227078125|gb|EEI16088.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM 44291] Length = 285 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 81/261 (31%), Positives = 118/261 (45%), Gaps = 17/261 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQ---KNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 R + I Y+G+ + GW RQ +G ++Q +I+ A+ V V + AGRTD+GVH Sbjct: 7 RLRLDIAYDGTDFHGWARQREQPDGTPTRTVQQTIQSALSTVLRTPVELTVAGRTDAGVH 66 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARFSAIRR 110 A QVAH D+ + A L + + +S V F ARFSA+ R Sbjct: 67 ASGQVAHADIPAASLDQRSIDGDPARLVRRLAKLLPADVRVYGVSAVSPLFDARFSALTR 126 Query: 111 SYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 SY+YR+ T A + R + + +D M++AA VG HDF F A++ Sbjct: 127 SYVYRVTTHPAGALPTRARDTAVWRRPVDIGAMQVAADAFVGLHDFAAFCRAKPHATTVR 186 Query: 170 RTIDHFDVN----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + ++ V NL E V A +F +RS V + VG+G T +E L Sbjct: 187 KVVEMRWVEASTGEEPNLYEAHVTADAFCWNMVRSLVAACLQVGEGSKDPTWVEPLLGET 246 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R LAP +GL V Y Sbjct: 247 TRHPHVLLAPAKGLTLVDVSY 267 >gi|260072704|gb|ACX30601.1| pseudouridylate synthase [uncultured SUP05 cluster bacterium] Length = 218 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 ++ + +EY G+ + GWQ QK+G ++Q +E+A+ V V V +GRTD+GVHAL Q Sbjct: 1 MKLALGVEYLGTNFHGWQLQKSGIRTVQQVVEQALSSVADHPVRVFCSGRTDAGVHALEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ + N L ++ V+ FHARF A R Y Y+I Sbjct: 61 VIHFETTAKREDKAWVLGGNVNL--PFDVNFKWAKQVNDDFHARFDAHARQYHYKIHNTP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A++ ++LD + M AA+ L+G HDF++FR CQA SPI+T++ + Sbjct: 119 VRSAVKHAYTLWESRTLDIKLMNQAAECLIGEHDFSSFRGSLCQAKSPIKTVEFIRLTQS 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 GN I + + A +FLH +R+ VG+L VG G+ S ++ Sbjct: 179 GNGILLDIKANAFLHHMVRNIVGTLIKVGKGEQDSAWVK 217 >gi|269124177|ref|YP_003306754.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] gi|268315503|gb|ACZ01877.1| tRNA pseudouridine synthase A [Streptobacillus moniliformis DSM 12112] Length = 244 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 113/246 (45%), Gaps = 3/246 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +I +Y+GS ++G QRQK+ ++QG+IE + E V + +GRTD GVHA Q Sbjct: 1 MNNIKIIYQYDGSAFYGSQRQKDKVTVQGTIEDILINSFNEKVNMISSGRTDRGVHAKMQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V++F + ++ I+ + Y + I IL++ VD ++++RF + R+Y + + R+ Sbjct: 61 VSNFIINKDIKLDIIKSKIEKY--SNYAIKILSIEKVDIKYNSRFDCMERTYEFILSNRE 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + I +D E + + + + + + +PIR I Sbjct: 119 NITPFNRKYITSINYEIDVEKLNDILKQFIGKHNFSNFSKKENKANKNPIREIYECYSIK 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + SFL + +R +G+ + GK + +++A + + GL Sbjct: 179 KDKNIHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHFIKEAFDNPNPNTKKYILDGNGL 238 Query: 240 YFDSVE 245 Y V+ Sbjct: 239 YLYHVK 244 >gi|283457578|ref|YP_003362161.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] gi|283133576|dbj|BAI64341.1| pseudouridylate synthase [Rothia mucilaginosa DY-18] Length = 348 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 86/278 (30%), Positives = 123/278 (44%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y+GS + GW Q N ++QG IE A+ L+ V AGRTD+GVHA Q Sbjct: 46 HRVRIDCAYDGSLFSGWAAQPNLVTVQGVIENALELILRAPHRVVVAGRTDAGVHAEAQT 105 Query: 62 AHFDLVREWVPVILCK----------------ALNAYLKISD---------------TIS 90 H DL E + + AL L ++ I Sbjct: 106 LHCDLSDEDWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQ 165 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQH 148 I ++ V F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ Sbjct: 166 IHRVAEVPFDFDARFSATGRRYVYRIADGAADGLNPLHRTYTWAVPEHLDCADLNESAQQ 225 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L+G DF +F A++ + + LIE+ VVA +F H +RS VG+L L Sbjct: 226 LLGLRDFLSFCKPREGATTIRELRELSFTRTESALIEVCVVADAFCHHMVRSLVGALVLY 285 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK + L + ++ R+ LAPP L + Y Sbjct: 286 GTGKRDAAWLRERIENPGREASLTLAPPHALALAEIYY 323 >gi|296130457|ref|YP_003637707.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] gi|296022272|gb|ADG75508.1| tRNA pseudouridine synthase A [Cellulomonas flavigena DSM 20109] Length = 306 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 72/267 (26%), Positives = 114/267 (42%), Gaps = 24/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHGAGRTDSGV 55 +R + + Y+G G+ GW RQ ++QG +E A+ V V AGRTD+GV Sbjct: 12 VRLRLDLAYDGGGFAGWARQPGLRTVQGELEDALATVLRSGPRGEPRPRVTVAGRTDAGV 71 Query: 56 HALRQVAHFDLVREWVPVILCK-----------ALNAYLKISDTISILNLSIVDKQFHAR 104 HA QVAH D+V + + + L L + + + Sbjct: 72 HARGQVAHVDVVPDALAAARGRSDRAAVDVLGTRLAGILPPDVVVHAVRHAPEGFDARFS 131 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R +Y + L +G ++LD M AA+ LVGRHDF + Sbjct: 132 ALRRRYAYR-VCDSEGTRDPLRRGWVLWHRRALDVAAMDAAARSLVGRHDFAAYCKPRPD 190 Query: 165 ASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A++ IRT++ F + L+ V A +F H+ +R+ VG+ VG+G+ T Sbjct: 191 ATT-IRTLEEFTWTRPVDGPDAGLVVAHVQADAFCHSMVRALVGASLAVGEGRRPVTWPR 249 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 L A+ R+ + P+GL + V Y Sbjct: 250 DLLDARTRQGGATVVAPQGLTLEDVGY 276 >gi|149196320|ref|ZP_01873375.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] gi|149140581|gb|EDM28979.1| tRNA pseudouridine synthase A [Lentisphaera araneosa HTCC2155] Length = 276 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 6/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALR 59 M Y + I+++G+ +FGWQ Q + ++Q IEKA+ + + + G+GRTD+GVHA Sbjct: 1 MNSYKLSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFG 60 Query: 60 QVAHFDLVR--EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 A F + ++ L K LNA L +S I FHARFS I ++Y+Y I Sbjct: 61 LCATFTEPKISKFTSDTLRKGLNALLPVSIRIRSALQCET--DFHARFSCIGKTYVYFID 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFD 176 + +W + K L+ E MR + QHL G+HDF+ F IRT+ + Sbjct: 119 NSTTSSPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHAIRTVFKAE 178 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + G+++ + FL+ +RS G + VG AL++ R E G AP Sbjct: 179 LIEIGHIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVTAPA 238 Query: 237 EGLYFDSVEYS 247 +GL+ YS Sbjct: 239 KGLFLGQCYYS 249 >gi|297625831|ref|YP_003687594.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921596|emb|CBL56150.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 292 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 9/252 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R+ + + Y+G+ + GW Q +++G + + + G + V + AGRTD+GVHA Sbjct: 4 RRFRLDLSYDGTHFHGWAMQPGQRTVEGELATWLTRIAGTAQPVRLVVAGRTDAGVHARG 63 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVAH DL L + L L + L ++ ARF+AI R Y+YR+ Sbjct: 64 QVAHADLPATMDAAELKRRLLRALPPDIVVRRLTVAPPGFD--ARFAAIWRRYVYRLWDL 121 Query: 120 QAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L +G LD E M A L+G DF F A++ IRT+ + Sbjct: 122 SSHPDPLLRGMVTTKSLDLDPELMTAAGSRLLGLRDFAPFCRRREGATT-IRTLLQCEAR 180 Query: 179 SF---GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 IE+ V A +F H+ +RS G+L VG G + L++ R + P Sbjct: 181 RVADGCGTIELTVRADAFCHSMVRSLTGALVAVGSGTQSMDWLDEVAAGPTRAGSVTVMP 240 Query: 236 PEGLYFDSVEYS 247 GL + V Y+ Sbjct: 241 ARGLCLEQVAYA 252 >gi|255083272|ref|XP_002504622.1| predicted protein [Micromonas sp. RCC299] gi|226519890|gb|ACO65880.1| predicted protein [Micromonas sp. RCC299] Length = 253 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 84/253 (33%), Positives = 121/253 (47%), Gaps = 14/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y + + Y+G Y G+Q Q G ++QG +E+A+ +TG G +GRTD+GVHA Q Sbjct: 3 YALKLAYDGEAYLGFQYQPKGKTVQGEVERALTKLTGHDREFLGMQASGRTDTGVHARGQ 62 Query: 61 VAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + HF K+LN + + + + FHARF A+R++Y Y + R Sbjct: 63 ILHFYTKEPVSDLERFHKSLNG--IMPKDVRCVEVMRPHPAFHARFHAVRKTYHYFLDPR 120 Query: 120 QAPLAL-EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI---HCQASSPIRTIDHF 175 + K E +R AA VG HDFT+F + SP RTI F Sbjct: 121 LVLDPFVRRHALHCGWKPPSVERLREAAAVFVGTHDFTSFSNKSRDKTLVRSPTRTIYRF 180 Query: 176 DVNSFGN-LIEIRVVARSFLHTQIRSFVGSLKLVG---DGKWTSTDLEKALQAQDRKECG 231 DV + LI + V FL+ +R+ VG+L L DGK+T+ DL L+ +DR Sbjct: 181 DVVEQPDGLIRLEVEGNGFLYRMVRNMVGALMLAATGEDGKFTAEDLRDMLEGKDRGVAP 240 Query: 232 PLAPPEGLYFDSV 244 APP GL+ V Sbjct: 241 MGAPPHGLFLHEV 253 >gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631] Length = 262 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 25/247 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 +R + Y G+ + G+Q Q N ++ G + KA + + AGRTD+GVHA Sbjct: 1 MRIAYKLAYVGTNFHGFQYQPNVRTVAGELFKAFRALGIDPKKAKFRCAGRTDAGVHAFG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ + P + NA+L + ++ + VD++F+ R + R Sbjct: 61 QVIAINVEKPIFP----RMFNAHL--PEDVTFWAWTEVDEKFNPRHAKSR---------- 104 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + D MR A++ L+G HDF+ F + IRTI + ++ Sbjct: 105 -------TYVYVMPAEGYDISAMRKASKLLLGTHDFSNFTKKFGERRRCIRTIYNVELRL 157 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + +V +F +R V +L+ VG G + E L + +E AP GL Sbjct: 158 DDGFVVLEIVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDMLNPERHRERIEPAPAYGL 217 Query: 240 YFDSVEY 246 VEY Sbjct: 218 ILKDVEY 224 >gi|307610015|emb|CBW99548.1| transfer RNA-pseudouridine synthase I [Legionella pneumophila 130b] Length = 253 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 107/213 (50%), Gaps = 2/213 (0%) Query: 34 AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 A+ V + V AGRTD+GVHA QV HFD ++ N +L I + Sbjct: 24 ALSKVADSSISVVCAGRTDTGVHATNQVIHFDCEKDRSIRAWIHGANTFL--PKDICVKW 81 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + + FHAR+SA+ R Y Y I L +G + LD M+ Q L+G + Sbjct: 82 GKEMPENFHARYSAVSRRYRYVIYNGAIRPGLLRGNVTWQYRQLDHRLMQQGGQCLLGEN 141 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DFT+FRS+ CQ+++P+R I V G+L+ + + A +FLH +R+ G L VG GK Sbjct: 142 DFTSFRSVECQSNTPMRNIHQLQVTRHGDLVVLDITANAFLHHMVRNIAGVLIAVGSGKH 201 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ L A+DRK AP GLY V Y Sbjct: 202 PVGWVKDVLNAKDRKLGAETAPSYGLYLVQVTY 234 >gi|302764370|ref|XP_002965606.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] gi|300166420|gb|EFJ33026.1| hypothetical protein SELMODRAFT_84331 [Selaginella moellendorffii] Length = 269 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 14/256 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHALR 59 ++ +++ Y+G+ + GWQ Q + ++QG IE A+ + T E +++ A RTD+GVHAL Sbjct: 1 KWRIVVSYDGTRFSGWQYQPDFPTVQGLIEDALTKLTRYTREELLMAAASRTDAGVHALG 60 Query: 60 QVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + LN L I + +S FHA+ A + Y Y++ Sbjct: 61 QVAHFHSPACIGDLSRIHRGLNGTL--PHEIRVREISPAKSSFHAQACARTKRYQYKLFV 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFD 176 L + A+ +P+ LD M A + VG+HDF+TF + +P+R I F+ Sbjct: 119 APVMDPLLRLYAYHVPERLDVAAMAEACGYFVGKHDFSTFSNSSTLRPLQNPVREILRFE 178 Query: 177 VNSFGNLI---EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG-- 231 + +L + F H QIR+ VG + +G G+ + + + L +DR++ Sbjct: 179 LLEQASLGPVLCFEIEGTGFFHKQIRNMVGLIVAIGKGEHQARVIPELLAMKDRQKLARV 238 Query: 232 -PLAPPEGLYFDSVEY 246 AP GL SV Y Sbjct: 239 SITAPSRGLTLVSVHY 254 >gi|319956627|ref|YP_004167890.1| tRNA pseudouridine synthase a [Nitratifractor salsuginis DSM 16511] gi|319419031|gb|ADV46141.1| tRNA pseudouridine synthase A [Nitratifractor salsuginis DSM 16511] Length = 242 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 116/247 (46%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R +I Y+GS + G+QRQK ++QG++E+A+ + G + G+GRTD+GVHA Sbjct: 1 MQRIKAVIAYDGSAFEGFQRQKRTPRTVQGALERALASL-GIGTPIVGSGRTDAGVHATG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL W L + + D I +L+ V FHAR+ A R Y Y Sbjct: 60 QVIHFDLPPHWAKQPLDELQIHLNRRLDAIRFKHLTPVPADFHARYDAKERIYRYIFRRE 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + + + D + A + GRHDF+ F + + IRTI Sbjct: 120 PS---IFERKYVAGLAIADEAKLSEALKTFQGRHDFSHFLKTGSETAHNIRTITRAYFLR 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G I A FL Q+R V + V +G+ + L++ L+ R LAPPEGL Sbjct: 177 RGKYGYIYFHADGFLRAQVRMMVHAAAAVANGELSLEQLKEQLELGKR-YTTRLAPPEGL 235 Query: 240 YFDSVEY 246 Y V Y Sbjct: 236 YLARVIY 242 >gi|213964809|ref|ZP_03393008.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] gi|213952345|gb|EEB63728.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46] Length = 333 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 53/262 (20%), Positives = 87/262 (33%), Gaps = 17/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 +R I Y+G+ + GW Q++ ++Q ++E + V V + AGRTD+GV Sbjct: 46 VRLRFDIAYDGTDFHGWAAQRDKPTGEPVRTVQATLESTLEKVLRTPVQLTVAGRTDAGV 105 Query: 56 HALRQVAHFDLVREWVPVILC--------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 HA QVAH D+ + + + L T+ + + Sbjct: 106 HASGQVAHADVPVSCLDTRSIAGDPGNLVRRVARLLPADVTLRGASFAPSGFDARFSALR 165 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 Y + A A L R ++ Sbjct: 166 RHYVYRVTSCVSGPLPTRARDTAHWRRSVDIDRMQVAADALLGLNDFAAFCRHKPHATTT 225 Query: 168 PIRTIDHF---DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + L E V A +F + +RS VG+ VG+G+ E+ L Sbjct: 226 RDLQRFQWFDVSTRQEPELYEAHVTADAFCWSMVRSLVGACLSVGEGRREVGFTEQLLSE 285 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 + R P+A GL V+Y Sbjct: 286 EKRSPLVPVAEARGLSLVGVDY 307 >gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] gi|121692939|sp|A0B7V0|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT] Length = 267 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 22/246 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + I Y G Y+G+QRQ +++ + A+ + AGRTD GV AL QV Sbjct: 1 MKIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANGDFCYAGRTDRGVSALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + + + + +N+ L + ++ F AR+SA+ R Y Y + + Sbjct: 61 IDFWIEEDRAYLAFPRVINSLL--PSDVWAWARAVAPVGFSARWSALWREYRYFLFSPDI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 D +R AA HLVG HDF F +R I DVN+ Sbjct: 119 ----------------DLSAVREAAGHLVGTHDFRNFSMSKVDT---VRRIISIDVNAHC 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 ++ V A F+ +R VG+L+L+G G+ + + L P APPEGL Sbjct: 160 GIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLD-PSTPHGAPTAPPEGLML 218 Query: 242 DSVEYS 247 V YS Sbjct: 219 MDVGYS 224 >gi|224438205|ref|ZP_03659140.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313144651|ref|ZP_07806844.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] gi|313129682|gb|EFR47299.1| tRNA pseudouridine synthase A [Helicobacter cinaedi CCUG 18818] Length = 245 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY +I Y+GS ++G+ QK+ S+ G+++ V G + G RTD GVH+ Q Sbjct: 1 MPRYKAVISYDGSAFYGFALQKHKPSVLGALQDGFSRV-GIRGEILGTSRTDKGVHSTGQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F+ L LNA L + L V++ FH RF A+ R+Y + + + Sbjct: 60 VISFESRHFEDSHTLQNLLNAKLYPHIAVRR--LERVNEDFHPRFHALWRAYRFLLSSHA 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + K + + A G+H+F F+ IR I Sbjct: 118 PSPF--QSAYVSYEKIGNRALFQSALSMFKGKHNFALFKKNGSFTKDSIRDIFRIFSYQH 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L + + FL +Q+R VG+ V G+ + L++ +QA+ R P++P GLY Sbjct: 176 KGLDIVYIKGNGFLRSQVRLMVGAALSVSRGELSLESLQEQIQAKKRHYNFPISP-NGLY 234 Query: 241 FDSVEYS 247 V YS Sbjct: 235 LCGVGYS 241 >gi|159039803|ref|YP_001539056.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] gi|157918638|gb|ABW00066.1| tRNA pseudouridine synthase A [Salinispora arenicola CNS-205] Length = 276 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 107/249 (42%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q + ++ G + +A LV G + AGRTD+GVHA Sbjct: 5 TRVRLDVSYDGTDFSGWAVQPDRRTVAGVLVQAFDLVLGSDAATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL+ E + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHVDLLTEVWRRHEGTLLRRLARLLPGDVRVRAVTGVPGDFDARFSATFRRYEYRVTD 124 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + LD + + AA LVG HDF + A++ Sbjct: 125 APWGAEPLRRHDTLAWSSRLDQDALNAAADGLVGEHDFAAYCRRKENATTLREVTRLDWR 184 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S ++ V A +F +RS VG++ +VGDG+ + L ++R +AP Sbjct: 185 RSADGVLVATVQADAFCQAMVRSLVGAMLVVGDGRRPAGWPAGLLARRERANEVNVAPAH 244 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 245 GLTLVAVGY 253 >gi|194334164|ref|YP_002016024.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] gi|194311982|gb|ACF46377.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271] Length = 237 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 10/243 (4%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 MIIEY+G+ + GWQRQ S++QG IE + + E V + GAGRTD GVHA+ Q A F Sbjct: 1 MIIEYDGTDFAGWQRQDGAVSTVQGEIEAVLRRILQEAVSITGAGRTDKGVHAMGQAASF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 LC +LN+ L +I I++L VD FHAR+SA+ R Y Y + R++ + Sbjct: 61 MTGSSMEAGRLCHSLNSLL--PSSIRIMSLIDVDGDFHARYSALSRQYRYMLRQRESAIF 118 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 LD N R A L+GRHDF F + T+ + Sbjct: 119 RRFSGYDRASHDLDQLNSR--ASVLLGRHDFKAFSKSGSDTRTTCCTVSEAQWFREKEFL 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 ++ A FL + +R V + +++ ++ AL ++ + A P GL+ + Sbjct: 177 VFQISANRFLRSMVRYLVSATL-----RFSGEEISYALVSRQPIKGLLPADPAGLFLWEI 231 Query: 245 EYS 247 Y+ Sbjct: 232 GYA 234 >gi|260891283|ref|ZP_05902546.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] gi|260858959|gb|EEX73459.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] Length = 250 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 6/249 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 MI +Y+GS + G+QRQK ++QG IE+A+F + + + +GRTD GVHA+ QV Sbjct: 4 RNLKMIYQYDGSKFCGFQRQKKMKTVQGEIERAVFKTFNQEINMISSGRTDKGVHAMEQV 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++F + + + +N L + +L + K F+ARF A R+YLY + + Sbjct: 64 SNFVIDENIPIEAIKRQINKCL--KGEVKVLEVEEAGKDFNARFDAKSRTYLYIMRNEED 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----TIDHFDV 177 E + S+ E + VG++DF++F +P+R ++D Sbjct: 122 ITPFEANYVTGLRASVSVEKFQEIMNDFVGKYDFSSFMKKDKAYRNPVREIVYIKCYYDE 181 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + + FL T +R +GS V G +++ L+ + + LA E Sbjct: 182 KIGQKQLNVEICGNGFLKTMVRIMIGSALAVYFGNVEEDYIKRRLENPNADDKKILAASE 241 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 242 GLYLYKVNY 250 >gi|312892081|ref|ZP_07751581.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] gi|311295453|gb|EFQ72622.1| tRNA-pseudouridine synthase I [Mucilaginibacter paludis DSM 18603] Length = 268 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 6/247 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +RY + + Y+G+ Y GWQ+ SIQ +E ++ V + G GRTD+ VHA + Sbjct: 1 MRYFVHLGYHGTQYSGWQKHAGVMSIQQVLENSLSQVLKTPTAIVGCGRTDAKVHASQFF 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 H D+ +L + LN L I+I ++ + HARF A +RSY Y I T Sbjct: 61 FHVDIDNPREFDLLFR-LNKIL--PADIAIFDIIPMAGLPHARFDATQRSYDYFIHT-YK 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTIDHFDVNS 179 L ++ +SLD M+ A L HD+ F + + T Sbjct: 117 DPFLNGFSSYYNEQSLDLHEMKKAVALLPLYHDYRAFCKSPDRNEHTLCHVTSAELFACK 176 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + A FL IR VG L +G G+ + + E+ L + A P+GL Sbjct: 177 NADRIRFNISANRFLSKMIRVIVGRLISIGTGEMSVDEFEQNLIKPQNAQTISPAHPQGL 236 Query: 240 YFDSVEY 246 Y V Y Sbjct: 237 YLSKVTY 243 >gi|288919692|ref|ZP_06414019.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] gi|288348881|gb|EFC83131.1| tRNA pseudouridine synthase A [Frankia sp. EUN1f] Length = 275 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 91/239 (38%), Gaps = 3/239 (1%) Query: 9 EYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLV 67 Y+G+ + GW RQ ++QG +E A+ V V + AGRTDSGVHA+ QVAH DL Sbjct: 15 AYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAIGQVAHVDLP 74 Query: 68 REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 L + LN L + + L + + R Y A Sbjct: 75 TGTPVGGLARRLNGVLDRAVRVKGLAPAPAGFDARFSALSRRYVYRITDAPFGAEPLRRF 134 Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 A L R + ++ +RT+ DV+ +I Sbjct: 135 DTLASPRPLDVPAMAEAALLLLGEHDFAAFCR--RREGATTVRTLLRLDVSRVEGVILAD 192 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V A +F H+ +R+ VG+L VG+G+ L R + P GL V Y Sbjct: 193 VEADAFCHSMVRALVGALVAVGEGRRRPEWAAAVLGRGVRDSGVTVLPAHGLTLVEVRY 251 >gi|194246764|ref|YP_002004403.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] gi|254764860|sp|B3R022|TRUA_PHYMT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|193807121|emb|CAP18559.1| tRNA pseudouridine synthase A [Candidatus Phytoplasma mali] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 116/246 (47%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQ 60 Y +++ Y+G+ Y+G+Q+Q + ++IQ +E + + + + ++GA RTD GVHA Q Sbjct: 4 FNYKLVLSYDGTNYYGFQKQLHLNTIQSVLENVLNKITKQKKIKIYGASRTDKGVHASGQ 63 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF L K LN L I I + ++ K+FH RF A +S +Y + + Sbjct: 64 VVHFQLPFLIPNDHFQKILNFCL--PSDIQITKIILISKEFHCRFQA--KSKIYHYVFSK 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + R + ++D ++ A + G+HDF+ F S + R I + Sbjct: 120 KKLNVFNYRFQVYIPNMDFNKIKEAILFIEGKHDFSLFTSQK-SLKNYQRIIFKAFIKET 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + SF+ IR VG L + K T ++ ++ L + ++ LAP +GL Sbjct: 179 KQKYFLIIHGNSFIQHMIRFLVGFLIEIAQNKKTLSEFKQMLDLKINQKARLLAPAKGLI 238 Query: 241 FDSVEY 246 + Y Sbjct: 239 LKKIFY 244 >gi|189500072|ref|YP_001959542.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] gi|189495513|gb|ACE04061.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides BS1] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 113/242 (46%), Gaps = 10/242 (4%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 M IEY+G+ + GWQ+Q ++QG +E + + E VV+ AGRTD GVHA QVA+F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L +LNA L T+ I ++ V FHAR+SA+ YR + P A Sbjct: 61 RTASCLSTGRLLHSLNALL--PSTVCIRDMQEVPDSFHARYSAL--FREYRYFFLEKPSA 116 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 L K A + LD + + A LVGRHDF+ + Q S T+ + Sbjct: 117 LGKRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKV 176 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 R+ A FL T +R V + G G+ T + L+ + + A P GL+ V Sbjct: 177 VFRIAANRFLRTMVRFLVSAQLEAGPGELT-----ERLRRGNVLKNIVPADPAGLFLWKV 231 Query: 245 EY 246 Y Sbjct: 232 LY 233 >gi|238061092|ref|ZP_04605801.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] gi|237882903|gb|EEP71731.1| tRNA-pseudouridine synthase I [Micromonospora sp. ATCC 39149] Length = 276 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV--VHGAGRTDSGVHALR 59 +R + + Y+G+ + GW Q ++ G + + LV G V + AGRTD+GVHA Sbjct: 5 VRLRLTVAYDGTNFSGWAAQPARRTVAGVLTGTLDLVLGAGVATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPAAVWREHEGRLLRRLARLLPTDVRVRAMTEVPADFDARFSATFRRYEYRVTD 124 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L + PK LD + AA LVG HDF + A++ Sbjct: 125 APFGAEPLRRHEVLAWPKPLDPALLNAAAAGLVGEHDFAAYCRRKENATTLREVTRLDWR 184 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G L+ V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 185 RDPGGLLVATVQADAFCQAMVRSLVGAMLVAGDGRRPVDWPGSLLTRRERSSEVTVAPAH 244 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 245 GLTLVAVGY 253 >gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP] Length = 266 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 27/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y+GS ++G+QRQ +++G I + + + + E GA RTD GV A Sbjct: 1 MRIALKIAYDGSKFYGFQRQPGLRTVEGEIIRVLQKLDVIESPENANFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L V F+ + + LN +L+ I +L ++ V FH RF A + Y Y ++ Sbjct: 61 LGNVIAFNTENP--KLAQPRVLNHHLR---DIWVLGVAQVSDDFHPRFWAKSKIYRYYLV 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + K A L + D + PIR ++ ++ Sbjct: 116 DEGFDVNAMKECARLFVGTHDFSAFARVEKF-----------------KDPIREVNRLEI 158 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G+LI I + +SFL +R V +LKL G G + D+ K L+ + K+ P PPE Sbjct: 159 IPRGDLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLEGRTDKKLPPS-PPE 217 Query: 238 GLYFDSVEY 246 L ++Y Sbjct: 218 NLVLWEIKY 226 >gi|167758957|ref|ZP_02431084.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] gi|167663364|gb|EDS07494.1| hypothetical protein CLOSCI_01303 [Clostridium scindens ATCC 35704] Length = 245 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVH 56 M + IEY+GS Y GW R +++ +++ I + + ++GE + ++ RT+ GVH Sbjct: 1 MRNIKLTIEYDGSRYQGWTRLGKEESNNTVSNKIIEVLRKMSGEYLIELNCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q+A+F + + + LN YL I+I + V ++FHA+ +A ++Y+YR+ Sbjct: 61 AYAQIANFKTESKMDVLEIKHYLNRYL--PMDIAITEVEEVPERFHAQLNAASKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + K D M+ AA L+G HDF F + S R I + Sbjct: 119 TIDDVPSVFDRKYTYHCFKIPDKRVMQQAAMLLIGTHDFKNFSTAKKS-KSTERQIFEIE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++I + A FLH R +G+L +G G D+E+ R+ P Sbjct: 178 VYGDTEEMQILIHADDFLHNMARLIIGTLMDIGFGTRRKEDIEEIFAG--RQLASAPCDP 235 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 236 KGLYLQEVAY 245 >gi|206895862|ref|YP_002247302.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] gi|238057727|sp|B5Y955|TRUA_COPPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|206738479|gb|ACI17557.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM 5265] Length = 259 Score = 140 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 4/244 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++Y ++++ G+ Y G+QRQKNG++IQ +E + + VV +GRTD+GVHA Sbjct: 1 MVKYAGLLQFKGTNYAGFQRQKNGTAIQNVLESTLSQINNRATVVRYSGRTDAGVHAWGM 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + LN L + ++++ +F + SA+ + YLY + Sbjct: 61 PFVFWGREDLSADKWMFILNRML--PKDMRVISVVRTSPEFDPQLSAVAKQYLYCATQER 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + A+L S++ + AA+ LVG HDF F S R + V Sbjct: 119 LGPLWDDFFAYLPNLSIETSAVISAARKLVGEHDFKGFSKKGSSVKSTRRKLYEVSVMFT 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + + V FL+ +R VG+L +G GK +++ L AP +GL+ Sbjct: 179 HSRMYFSFVGNGFLYGMVRLMVGTLLQIGWGKQDVNFIDEVLSGN--AVANYSAPAQGLH 236 Query: 241 FDSV 244 V Sbjct: 237 LVKV 240 >gi|220913398|ref|YP_002488707.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] gi|219860276|gb|ACL40618.1| tRNA pseudouridine synthase A [Arthrobacter chlorophenolicus A6] Length = 297 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 111/261 (42%), Gaps = 17/261 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QG++E+A+ L+ + V AGRTD+GVHA QV Sbjct: 18 RIRLDLSYDGGPFSGWAVQPGRRTVQGTLEEALELLVRRPLRVTVAGRTDAGVHARGQVV 77 Query: 63 HFDLVREWVPVI-----------LCKALNAYLKI-----SDTISILNLSIVDKQFHARFS 106 H DL + + + L L + + + ++ F ARFS Sbjct: 78 HLDLAESEWLGMARGHELDPATAMTRRLRGALNRVLGDLTGAVQVRGIAPAPDGFDARFS 137 Query: 107 AIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI A LE+ LD E + A L+G +F +F A Sbjct: 138 ALWRRYSYRIADGPALWDPLERAFTLWHKNPLDVELLNQGAARLLGLQNFLSFCKPREGA 197 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ + I V A +F H +R+ +GS VG+G L + L AQ Sbjct: 198 TTIRELQRFEFARAEDGAIVATVQADAFCHNMVRALIGSALYVGEGTVEPGWLYERLLAQ 257 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R LA P L F+ V Y Sbjct: 258 KRDAKSVLAAPHPLVFEEVAY 278 >gi|227487069|ref|ZP_03917385.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227541767|ref|ZP_03971816.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] gi|227093143|gb|EEI28455.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51867] gi|227182473|gb|EEI63445.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum ATCC 51866] Length = 284 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 91/261 (34%), Gaps = 15/261 (5%) Query: 1 MI-RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVH 56 M I Y+G+ + GW QK G ++Q +IE+A+ LV + + AGRTD+GVH Sbjct: 1 MTVNLRFDIAYDGTNFHGWATQKGGLRTVQQTIEEALRLVLRLDDSYQLTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREW--------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 A QVA+ + P L + LN L ++ ++ + Sbjct: 61 ATGQVANMVVPESCLEQRSIDGDPARLTRRLNKLLPDDISLLAVSAAPEAFDARFGALRR 120 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y A A+ + + + Sbjct: 121 YYEYRVTTRPGGPLPLRRFDTATWKKPVDIDVVSACASAFVGLHDFAALCKHKPHATTIR 180 Query: 169 IRTIDHFDVNSFGNLIEIR---VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ S + V A +F + +RS VG+ VG+G+ + L + Sbjct: 181 TVETFTWEDISTPCEPQTYLAKVSADAFCWSMVRSLVGACLAVGEGRRDLSFAPHLLTLK 240 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 +R P+A GL V+Y Sbjct: 241 ERAADVPVASACGLTLTGVDY 261 >gi|78185547|ref|YP_377981.1| tRNA pseudouridine synthase A [Synechococcus sp. CC9902] gi|123743513|sp|Q3AW68|TRUA_SYNS9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|78169841|gb|ABB26938.1| tRNA pseudouridine synthase [Synechococcus sp. CC9902] Length = 300 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 110/248 (44%), Gaps = 4/248 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ N S+Q +E AI + + AGRTD+GVHA Q Sbjct: 16 RRIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAGVHAAAQ 75 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + + +HA +SA+ R Y Y I + Sbjct: 76 VVHFDCSGPIPAAKWAPALNGRL--PASIRVRESVERPRDWHACYSAVYRRYRYIIHNGR 133 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P L+ ENMR+A + ++G HDF F + TI V Sbjct: 134 RPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMRAGSRRPHSRTTIQDVLVER 193 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI + + A FL+ +R + L VG+ + + E+ + + R + AP GL Sbjct: 194 EGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAAPARGL 253 Query: 240 YFDSVEYS 247 Y+ Sbjct: 254 CLLRAGYA 261 >gi|289706561|ref|ZP_06502911.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] gi|289556696|gb|EFD50037.1| tRNA pseudouridine synthase A [Micrococcus luteus SK58] Length = 297 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 97/260 (37%), Gaps = 16/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDLVREWV------------PVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAI 108 AH DL L + L L + + F ARFSA+ Sbjct: 79 AHLDLTETEWAGLTRGRPGLEPAASLTRRLGGVLSGWGGAVVVHGAGRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y YRI A + D A L + R + Sbjct: 139 WREYEYRIDDAPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRAGATT 198 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + G + R+ A +F H +R+ VG+L VG+G L + + Sbjct: 199 IREVQHLEVRRDEDGVVRV-RIRADAFCHNMVRAIVGALLQVGEGAREPGWLARRVARPA 257 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R LAPP GL +V Y Sbjct: 258 RDSEVRLAPPGGLTLLAVGY 277 >gi|302524024|ref|ZP_07276366.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] gi|302432919|gb|EFL04735.1| tRNA pseudouridine synthase A [Streptomyces sp. AA4] Length = 298 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 74/262 (28%), Positives = 113/262 (43%), Gaps = 19/262 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 +R + + Y+G+ + GW RQ ++Q +E+A+ V AGRTD+GVHA Sbjct: 17 VRLRLDVSYDGTDFSGWARQPGRRTVQAELEQALQRQPPGEAVPKSVVVAGRTDAGVHAT 76 Query: 59 RQVAHFD-------------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 QV H D + +P + + + +LN + F ARF Sbjct: 77 GQVVHVDVVPFAPGAPGRIPVDERGIPDLTRMRGRWNKLLPADVRVLNARVAPDGFDARF 136 Query: 106 SAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SAIRR Y YR+ L + + L E M AA L+G DF + Sbjct: 137 SAIRRHYRYRVSDAPWGVDPLRRNDTLAWGRPLSTERMNAAAAELLGLQDFAAYCKQREG 196 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ +L+E+RV A +F H+ +RS VG L LVGDG+ + + L + Sbjct: 197 GTTIRELQRLEWTRIDEHLLEVRVSADAFCHSMVRSLVGVLLLVGDGRRGTGWPGEVLAS 256 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R +AP GL +V+Y Sbjct: 257 GTRDSA--VAPAHGLTLTAVDY 276 >gi|294660547|ref|NP_853358.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|298286877|sp|Q7NAQ9|TRUA_MYCGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|284812210|gb|AAP56926.2| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(low)] gi|284930851|gb|ADC30790.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. R(high)] Length = 263 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 111/245 (45%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q Sbjct: 23 KNVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQY 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + L + LN Y + I + VD+ FHARFSA ++YLY +I A Sbjct: 83 ISFYIDDRISLEKLREILNRYGQNK--WYIKWIKEVDRNFHARFSAKAKTYLY-LIDYCA 139 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L AW++ LD + A L G H+F +F + RTI D+ Sbjct: 140 NNPLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDKGL--RTIHKIDLKQED 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + FL + +R VG+L +G K+ L+ L + AP GLY Sbjct: 198 NKVYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYL 257 Query: 242 DSVEY 246 V Y Sbjct: 258 YEVYY 262 >gi|239918171|ref|YP_002957729.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] gi|281415639|ref|ZP_06247381.1| tRNA pseudouridine synthase A [Micrococcus luteus NCTC 2665] gi|239839378|gb|ACS31175.1| pseudouridylate synthase I [Micrococcus luteus NCTC 2665] Length = 297 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 67/260 (25%), Positives = 95/260 (36%), Gaps = 16/260 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW RQ S+QG++E + + V AGRTD+GVHA QV Sbjct: 19 VRVRLDLAYDGGAFHGWARQPGLDSVQGALEDGLERILRRPVRTVVAGRTDAGVHARGQV 78 Query: 62 AHFDLVREWV------------PVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAI 108 H DL L + L L + + F ARFSA+ Sbjct: 79 VHLDLAETEWAGLTRGRPGLEPATSLTRRLGGVLSGWGGAVVVHGARRAPAGFDARFSAL 138 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKS--LDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y YRI A + D A L + R + Sbjct: 139 WREYEYRIDDVPAARDPRTRGFTHWHGAALDDRLMALEADAVLGLHDFLSFCRPRAGATT 198 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + G + R+ A +F H +R+ VG+L VG+G L + Sbjct: 199 IREVQHLEVRRDEDGVVRV-RIRADAFCHNMVRAMVGALLQVGEGVREPGWLAHRVARPA 257 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R LAPP GL +V Y Sbjct: 258 RDSEVRLAPPGGLTLLAVGY 277 >gi|116671484|ref|YP_832417.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] gi|116611593|gb|ABK04317.1| tRNA pseudouridine synthase A [Arthrobacter sp. FB24] Length = 280 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 17/262 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G + GW Q ++QG +E A+ L+ V V AGRTD+GVHA QV Sbjct: 1 MRIRLDLAYDGGPFSGWAVQPGLRTVQGVLESALALLIRRKVRVTVAGRTDAGVHARGQV 60 Query: 62 AHFDLVREWVPVILC-----------KALNAYLKIS-----DTISILNLSIVDKQFHARF 105 H DL E + + L L I + ++++ + F ARF Sbjct: 61 VHLDLTEEEWQGLNRGVELDPAVALLRRLRGALSRGLGDLTGAIEVHSVTVAPEGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 SA+ R Y YRI A + + LD + A L+G +F ++ Sbjct: 121 SALWRRYSYRIADGPALWDPLGRYSTLWHKEQLDVSLLNEGASKLLGLQNFRSYCKPREG 180 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +++ +I V A +F H +R+ VGS VG G L + L Sbjct: 181 STTIRELQRFEFARGTDGVIVATVQADAFCHNMVRALVGSALYVGSGAEKPGWLYERLLE 240 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 Q R L+ P L + V Y Sbjct: 241 QKRDAKSVLSAPHPLVLEEVAY 262 >gi|308809101|ref|XP_003081860.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116060327|emb|CAL55663.1| COG0101: Pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 338 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 94/300 (31%), Positives = 136/300 (45%), Gaps = 55/300 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGV 55 RY +EY+G+ + G+QRQ + +++Q ++++A+ TG V G+ RTD GV Sbjct: 12 PRYLAFLEYDGAKFRGFQRQNLGERATTTVQDALDEALETFTGNRGAVASVGSSRTDVGV 71 Query: 56 HALRQVAHFDL--------VREWVPVILCKALNAYLKISDTISILNLSIV----DKQFHA 103 HA R AHFD + + + + LN +LK + + + + FHA Sbjct: 72 HATRNSAHFDCGRVGKDGSMDAYDSESVRRGLNYHLKSRERAMRVTECVRVDTLNPTFHA 131 Query: 104 RFSAIRRSYLYRI-------------------------ITRQAPLALEKGRAWLIPKSLD 138 R A+ R Y Y I R A + LD Sbjct: 132 RHDAVSRRYRYEILVGDRDDGGSVFDRDGAWYLRAVVASDRGAKQTSSRRYTTCEATGLD 191 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI------------EI 186 + MR AA L+G+HDF++FR+ CQA SPIRTI DV S + Sbjct: 192 VDAMRRAASVLIGKHDFSSFRASGCQAKSPIRTITSLDVVSRTTEWPSPEARGTRQEVSV 251 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 RV A SFL+ Q+R VG+LK VG G T D+ + L+A+D + +AP GLY V Y Sbjct: 252 RVEAPSFLYHQVRLLVGALKSVGAGDLTVDDVRELLEAKDVSQAPQMAPAHGLYLMDVGY 311 >gi|311745752|ref|ZP_07719537.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] gi|311302425|gb|EAZ79545.2| tRNA pseudouridine synthase A [Algoriphagus sp. PR1] Length = 274 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 12/250 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y I Y G+ Y GW Q N ++Q +E+ + V G E + GA RTDSGV + Sbjct: 8 YLFSISYYGARYKGWAPQPNQQTVQRRLERVLRHVLGHEDFSLIGASRTDSGVSCVGGFV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E +L N +L I + ++ V F+ S +++Y Y Sbjct: 68 QVFLRDEVEMDLLLPQFNEHL--PQDIHLNSVKEVSTTFNLIQSVKKKTYRYYFSNSSDF 125 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---- 178 + L+ E M A + +G+HDF +F + R + ++ Sbjct: 126 HPFASAFMVNASEELNWEAMNEACKSFIGKHDFKSFCKPSENKTDYNREVLSAEICDSNE 185 Query: 179 -----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ FLH Q+R + +L +G G+ +++E ++ DR E P Sbjct: 186 FMGQYFPHKIYYFQITGTGFLHHQVRMMMSALWQIGKGEMDLSEIEARFESSDRFEKLPP 245 Query: 234 APPEGLYFDS 243 AP GL Sbjct: 246 APANGLVLWE 255 >gi|24212680|sp|Q9X796|TRUA_MYCLE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 286 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 15/258 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I Y+G+ + GW Q ++ G +++A V V + AGRTD+GVHA QV Sbjct: 11 VRLRLDIAYDGTDFAGWAVQAGQRTVAG-LDEAFTTVFRTPVRLRAAGRTDTGVHATGQV 69 Query: 62 AHFDLV------------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AH D+ P L + + +L+++ F ARFSA+R Sbjct: 70 AHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVRVLDIACAPVGFDARFSALR 129 Query: 110 RSYLYRIITRQAPLALEK-GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+ T + + P+ LD ++M A++ L+G DF F A++ Sbjct: 130 RHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDLLGLRDFAVFCRHRHGATTI 189 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R + + + G LI + A +F + +RS +G+L VGD + T + L R Sbjct: 190 -RELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGDHRRTIGWCGELLTKASRS 248 Query: 229 ECGPLAPPEGLYFDSVEY 246 AP GL F V+Y Sbjct: 249 SDFTTAPAHGLTFIRVDY 266 >gi|197303254|ref|ZP_03168295.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] gi|197297680|gb|EDY32239.1| hypothetical protein RUMLAC_01977 [Ruminococcus lactaris ATCC 29176] Length = 242 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + M ++Y+G+ Y GW + K+ ++ +E+ + + G+ V +H A RT+ VHA Sbjct: 1 MNNFKMTLQYDGTRYLGWTKNEKSVKTVSYKLEQVLTRLLGQPVTLHAAVRTEPCVHASC 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F+ + P +L K +N YL I +L+L V +F A +Y Y + T Sbjct: 61 QVCSFEADLPFSPEVLKKQMNQYL--PMDIKVLSLLPVSGRFRADLGIRAYTYEYNVCTA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + D M+ AA L+G+HDF +F + + + + + D Sbjct: 119 SVYDVFHSRYQAHFFPAPDLALMKQAASCLIGKHDFQSFSPVR-KKKGTKKELLYLDFIQ 177 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + R+ A +FL + + VG+L +G GK + + + + G P +GL Sbjct: 178 NKEQLSFRLTANAFLPSMPQLIVGTLLEIGQGKRSPDCILSIFEGNETP--GNFCPSDGL 235 Query: 240 YFDSVEY 246 + ++Y Sbjct: 236 FLTEIQY 242 >gi|163840856|ref|YP_001625261.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] gi|162954332|gb|ABY23847.1| tRNA pseudouridine synthase A [Renibacterium salmoninarum ATCC 33209] Length = 297 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 17/261 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G+ + GW Q ++QG +E ++ ++ +V V AGRTD+GVHA QV Sbjct: 18 RLRLDLAYDGAPFSGWALQPERLTVQGVLEDSLAMILRRLVRVTVAGRTDAGVHARGQVV 77 Query: 63 HFDLVREWVPVILC-----------KALNAYL-----KISDTISILNLSIVDKQFHARFS 106 H + I + L L + + + + ++ + F ARFS Sbjct: 78 HAEFYPHEWEQIARRSTASPEEAVLRRLRGALSRVLGEQTGAVVVHSVRPAEPGFDARFS 137 Query: 107 AIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y Y I R A +++ W LD E + +A Q L+G DF F A Sbjct: 138 ALWRRYSYHIADRPAQWDPVQRQMTWWHKTELDVELLNLAVQPLLGLQDFRAFCKPRPGA 197 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ I++ V A +F H +R+ +GS VG G+ + L + L + Sbjct: 198 TTVRELQRLEFSRQPDGTIKVAVQADAFCHNMVRALIGSAVQVGSGEQSPDWLAERLAIK 257 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R LAPP L + V Y Sbjct: 258 VRDAKSGLAPPHPLVLEEVHY 278 >gi|15639816|ref|NP_219266.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum str. Nichols] gi|189026054|ref|YP_001933826.1| tRNA pseudouridine synthase A [Treponema pallidum subsp. pallidum SS14] gi|6136049|sp|O83802|TRUA_TREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238689345|sp|B2S468|TRUA_TREPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|3323141|gb|AAC65796.1| pseudouridylate synthase (hisT) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018629|gb|ACD71247.1| pseudouridylate synthase [Treponema pallidum subsp. pallidum SS14] Length = 280 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 8/238 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 + + I Y+G+ + GWQ+Q +G S+QG +EK + + + V G+GRTDSGVH Sbjct: 5 RKILLRISYDGTRFCGWQKQVSGSRERAPSVQGELEKVAEKIHHQKIAVIGSGRTDSGVH 64 Query: 57 ALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ Q AHF + A N+ L +I I + V Q HARFSA+ R+Y Y Sbjct: 65 AVGQAAHFCTPMRNILAYRFIPAFNSLL--PHSIRITDAREVSSQLHARFSAVMRTYRYH 122 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + A E W I + D + A L G D T+F + +++S R Sbjct: 123 LHCAPVAYAHELPYCWHIARMPDIHLLNQYAATLKGELDCTSFAAAGDKSASKSRYFYDT 182 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ + A +FL +RS G+L + + + + L A+DR+ GP Sbjct: 183 HFSFNHRVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRLQGPP 240 >gi|166032002|ref|ZP_02234831.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] gi|166028455|gb|EDR47212.1| hypothetical protein DORFOR_01704 [Dorea formicigenerans ATCC 27755] Length = 310 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVH 56 M + IEY+GS Y GW R ++ ++I I + +TGE + ++ RT+ GVH Sbjct: 66 MRNIKITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVH 125 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + LN YL I+I + V +FHA+ +A+ ++Y+YR+ Sbjct: 126 AYAQVANFKTSSNLSTKDIQHYLNRYL--PMDIAITEVEEVPDRFHAQLNAVSKTYVYRM 183 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P E+ + K+ D + M+ AA +G HDF F + + R + D Sbjct: 184 TIMDVPSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNFSTAKKS-KNTTREVYDID 242 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ++I + A FLH R +G+L +G G D+E + K G P Sbjct: 243 IYGDNEEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDP 300 Query: 237 EGLYFDSVEY 246 +GLY VEY Sbjct: 301 KGLYLQEVEY 310 >gi|260906021|ref|ZP_05914343.1| pseudouridylate synthase I [Brevibacterium linens BL2] Length = 284 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 83/264 (31%), Positives = 117/264 (44%), Gaps = 18/264 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ + + Y G+ + GW +Q ++Q S+E + +TG V AGRTD+GVHA RQ Sbjct: 1 MTRFRIDLGYRGTDFHGWAKQPGLRTVQDSLEAGLSRITGAEVATIVAGRTDAGVHARRQ 60 Query: 61 VAHFDLVREWVPVILCK-----------ALNAYLKIS--DTISILNLSIVDKQFHARFSA 107 V H DL E + ++ K L L + D I I +S V + F ARFSA Sbjct: 61 VVHIDLAEEGIEKLIGKSSRPAEAALLSRLRGVLTVDDTDDIVIHAVSEVPEDFDARFSA 120 Query: 108 IRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R+Y YR+ R++ L LD E M AA+ G HDF F A+ Sbjct: 121 LWRTYQYRLADRRSFIDPLLTPVTPRHKGELDAEAMAEAAREAQGLHDFIPFCKPREGAT 180 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + + +I I + A +F H +R+ VG L VG G W T + L D Sbjct: 181 TIRTLHELEVTRDQEAVITIDLRADAFCHHMVRALVGGLIKVGSGTWPVTRPAELLTEAD 240 Query: 227 --RKECGPLA--PPEGLYFDSVEY 246 P+ P GL V Y Sbjct: 241 SGVDPDVPMFVSPAHGLVLTGVGY 264 >gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626] Length = 281 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 5/246 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+ + G+ Q ++ G +++A+ V V + AGRTD+GV AL Q Sbjct: 22 IKLGYRGAAFSGFAEQPKQRTVAGDLKQALTTVLRRPVELTCAGRTDAGVSALAQYVSVP 81 Query: 66 LVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + + L + D ISI + F ARF A+ RSY YRI P+ Sbjct: 82 VDAHEEKIPKRQLLRSLTALTDDDISIQEIYKAQSGFSARFDALARSYRYRISAGLRPVL 141 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-- 182 W A + + +++ R ++ V Sbjct: 142 AWDHAWWYNGALDVAAMNEAAQIFVGEHDFKSFCKALSAVDKPTHRYVESIQVAEIQEAG 201 Query: 183 --LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 LI I +V +FLHT +R+ VG+L VG G + + L A DRK+ GP AP +GL Sbjct: 202 EKLIAIDIVGNAFLHTMVRTMVGTLVEVGRGHRATNWTREVLLACDRKKAGPTAPAKGLV 261 Query: 241 FDSVEY 246 F V Y Sbjct: 262 FTGVLY 267 >gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3] gi|259550472|sp|C5A7E9|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans EJ3] Length = 267 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 ++ + I Y+G+ ++G+QRQ +++G + + + + E GA RTD GV A Sbjct: 1 MKLALRIAYDGTAFYGFQRQPGIRTVEGELINVLTKLKIIESPEKNDFKGASRTDRGVSA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V F + E + + LN L + +L ++ V FH RF AI ++Y Y +I Sbjct: 61 FFNVVSF-VPGERADLARPEVLNHNL---HDLWVLGVAEVPDDFHPRFWAISKTYRYYLI 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L G A L D P+R I H + Sbjct: 117 DEGFELEKMVGCAKLFEGRHDFSAFARL-----------------EPGRDPVREITHISI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + +SFL +R V +L+ G ++ L + ++ P APPE Sbjct: 160 TPRHGYYVIEITGKSFLWEMVRRIVNALRFCGLSLLEPEEVGAML-SGVYEKKVPPAPPE 218 Query: 238 GLYFDSVEY 246 L +EY Sbjct: 219 NLILWHIEY 227 >gi|284931225|gb|ADC31163.1| tRNA pseudouridine synthase A [Mycoplasma gallisepticum str. F] Length = 263 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I Y+G+ + G+ Q + ++Q ++ A+ + + V+ +GRTD GVHA+ Q Sbjct: 23 KNVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQY 82 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + L + LN Y + I + VD+ FHARFSA ++YLY +I A Sbjct: 83 ISFYIDDRISLEKLREILNRYGQNK--WYIKWIKEVDRNFHARFSAKAKTYLY-LIDYCA 139 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L AW++ LD + A L G H+F +F + RTI+ ++ Sbjct: 140 NNPLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDKGL--RTINKINLKQED 197 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N + I + FL + +R VG+L +G K+ L+ L + AP GLY Sbjct: 198 NKVYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYL 257 Query: 242 DSVEY 246 V Y Sbjct: 258 YEVYY 262 >gi|255326873|ref|ZP_05367949.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] gi|255296090|gb|EET75431.1| tRNA pseudouridine synthase A [Rothia mucilaginosa ATCC 25296] Length = 321 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 88/278 (31%), Positives = 126/278 (45%), Gaps = 33/278 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + Y+GS + GW Q N ++QG+IE A+ L+ V AGRTD+GVHA Q Sbjct: 19 HRVRIDCAYDGSLFSGWAAQPNLVTVQGAIENALELILRAPHRVVVAGRTDAGVHAEAQT 78 Query: 62 AHFDLVREWVPVILCK----------------ALNAYLKISD---------------TIS 90 H DL E + + AL L ++ I Sbjct: 79 LHCDLNDEDWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAIQ 138 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAP--LALEKGRAWLIPKSLDCENMRIAAQH 148 I +S V +F ARFSA R Y+YRI A L + W +P+ LDC ++ +AQ Sbjct: 139 IHRVSEVSFEFDARFSATGRRYVYRIADGAANGLNPLHRTYTWAVPEHLDCADLNQSAQQ 198 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 L+G DF +F A++ + + LIE+RVVA +F H +RS VG+L L Sbjct: 199 LLGLRDFLSFCKPREGATTIRELRELSFTRTESGLIEVRVVADAFCHHMVRSLVGALVLY 258 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G GK + L + ++ R+ LAPP L + Y Sbjct: 259 GTGKRDAAWLRERIENPGREASLTLAPPHALALAEIYY 296 >gi|145352156|ref|XP_001420422.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580656|gb|ABO98715.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 35/280 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHAL 58 RY +EY+G+ + G+QRQ + ++QG++++A+ TG + G+ RTD GVHAL Sbjct: 12 PRYLAFLEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVGSSRTDVGVHAL 71 Query: 59 RQVAHFD---------LVREWVPVILCKALNAYLKI----SDTISILNLSIVDKQFHARF 105 R AHFD V + + +N +L+ + + ++ +FHAR Sbjct: 72 RNSAHFDFARTTKDGTTVEPHDGASVRRGVNYHLRKLGAAVRVTECVRVDEMNPKFHARH 131 Query: 106 SAIRRSYLYRIITRQ-------APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 A+ R Y Y I+ + L+ + MR AA L G HDF++F Sbjct: 132 DAVARRYRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMRDAAAALTGTHDFSSF 191 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLI------------EIRVVARSFLHTQIRSFVGSLK 206 R+ CQASSP+RT+ DV I V A SFL+ Q+R G+LK Sbjct: 192 RANGCQASSPVRTLTSIDVKEELTEWPAAEARGTKQKISIAVAAPSFLYHQVRLLAGALK 251 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG T D+++ L+A+D +AP GLY V Y Sbjct: 252 AVGANDLTVKDVQELLEAKDVARAPQMAPAHGLYLADVAY 291 >gi|295395151|ref|ZP_06805359.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] gi|294971913|gb|EFG47780.1| tRNA pseudouridine synthase A [Brevibacterium mcbrellneri ATCC 49030] Length = 303 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 76/267 (28%), Positives = 112/267 (41%), Gaps = 22/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R+ + + Y G+ + GW Q + ++QG +E A+ + V V AGRTD+GVHA RQV Sbjct: 17 QRFRIDLGYVGTHFHGWALQPHLRTVQGELETALARILSAPVRVTVAGRTDAGVHARRQV 76 Query: 62 AHFDLVREWV------------PVILCKALNAYL------KISDTISILNLSIVDKQFHA 103 H D+ + L + L + + I I +++ V F A Sbjct: 77 VHVDIPHTDFPRLVGQPRARAEQRTPARGLTSRLRGVLARQDASDIVIHDVTAVHADFDA 136 Query: 104 RFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 RFSA+ RSY YR+ QA L LD M AAQ + G DF F Sbjct: 137 RFSALWRSYTYRLADPQAFTDPLTAAFTVEHRAELDVAAMSAAAQQVCGLRDFLPFCKPR 196 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 +++ + +IE + A +F H +R+ VG L VG+GKW L Sbjct: 197 EGSTTIRTLEELRVERVGSGVIEFFLRADAFCHHMVRALVGGLVKVGEGKWGPGRLAGMC 256 Query: 223 QAQDRKEC---GPLAPPEGLYFDSVEY 246 + R + P GL + V Y Sbjct: 257 EEAGRGGSEFPMFVFPAHGLVLEDVGY 283 >gi|152990852|ref|YP_001356574.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] gi|151422713|dbj|BAF70217.1| tRNA pseudouridine synthase A [Nitratiruptor sp. SB155-2] Length = 241 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 6/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +I Y+GS + G+Q QK+ +++ + A+ V G + G+GRTD GVHA Q Sbjct: 1 MRIKAVISYDGSRFDGFQIQKHTANTVMHHLYNALQRV-GIESKIVGSGRTDKGVHATAQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL W + + L L S I +V + YR + ++ Sbjct: 60 VIHFDLPPFWSEL---ERLQNLLNESLRPYIQIKRVVKVPKEFHARYSAKRRAYRYLLKK 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + ++ + +LD E ++ GRHDF F S +R I + Sbjct: 117 SEPSVFENAYLHHVSNLDIEIIKRNISLFEGRHDFRYFMKTGSDTKSSVRRIFKTALYEK 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L + FL QIR VG+L +G G+ + L + R LAPP GLY Sbjct: 177 DDLYVLYFEGDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACKAR-YTSTLAPPNGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LCKIIY 241 >gi|88854648|ref|ZP_01129314.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] gi|88815809|gb|EAR25665.1| tRNA pseudouridine synthase A [marine actinobacterium PHSC20C1] Length = 315 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 73/267 (27%), Positives = 116/267 (43%), Gaps = 22/267 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHAL 58 R + I Y+G+ + GW +Q + ++QG+IE A+ ++ G + + AGRTD+GVHA Sbjct: 28 TRMRLDIAYDGTDFAGWGKQPSLRTVQGTIEDALGVIFRRFGAVPSLVVAGRTDAGVHAS 87 Query: 59 RQVAHFDL------------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 QVAH DL R P L + +N + I + +I Sbjct: 88 GQVAHLDLTDAQLISLDRPRRGNLRGKRYDGPASLARRINGIAGLEADIFLSRSAIAADG 147 Query: 101 FHARFSAIRRSYLYRI-ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R Y YRI ++ P +LD + M IA+ L+G HD+ + Sbjct: 148 FDARFSPLWRRYEYRIADNASPRDPRQRNHTVWYPATLDVDAMNIASDELLGLHDWAAYC 207 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A++ V + +I + A +F H+ +RS VG+ VG GK Sbjct: 208 KPREGATTVRSLERFNWVRNEEGIIVAELRADAFCHSMVRSLVGAGVFVGQGKLEVDRPV 267 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 + + + + P +GL V Y Sbjct: 268 EIRDERSKGSEYKVMPAKGLTLVEVGY 294 >gi|325964130|ref|YP_004242036.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] gi|323470217|gb|ADX73902.1| pseudouridylate synthase I [Arthrobacter phenanthrenivorans Sphe3] Length = 296 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 71/261 (27%), Positives = 108/261 (41%), Gaps = 17/261 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QG +E+A+ L+ V V AGRTD+GVHA QV Sbjct: 18 RVRLDLSYDGGPFSGWALQPGLRTVQGVLEEALHLLVRRPVRVTVAGRTDAGVHARGQVV 77 Query: 63 HFDLVREWV-----------PVILCKALNAYLKI-----SDTISILNLSIVDKQFHARFS 106 H DL V + + + L + + + + + F ARFS Sbjct: 78 HLDLTEAEWLGLPRGHELDPAVAMLRRIRGALSRILGDLTGAVEVHRIILAPPGFDARFS 137 Query: 107 AIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI A + LD + + A L+G +F +F A Sbjct: 138 ALWRRYSYRIADGPALWDPLGRYSTLWHKNPLDVDLLNEGASKLLGLQNFLSFCKPREGA 197 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ + +I V A +F H +R+ +GS VG+G L + L AQ Sbjct: 198 TTIRELQRFEFTRAEDGVIVATVQADAFCHNMVRALIGSALYVGEGVEEPGWLYERLLAQ 257 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R LA P L + V Y Sbjct: 258 KRDAKSVLAAPHPLVLEEVAY 278 >gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6] Length = 290 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 109/249 (43%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH---GAGRTDSGVHAL 58 +R + + Y G+ + G+Q Q + +++G + KA + G V AGRTD+GVHA Sbjct: 25 MRVALKLAYIGTDFAGFQYQPDERTVEGELFKAFESL-GINVKASNYKCAGRTDAGVHAF 83 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV D+ +L + +NA L D I + + V F+ R++ R Sbjct: 84 SQVVALDVSD--AKKVLPRVINANL--PDDIVVWAWAKVPDDFNPRYATSR--------- 130 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L + D MR AA+ L+G HDFT F + S +RTI + ++ Sbjct: 131 --------TYIYVLYSREYDISAMRKAAKLLLGTHDFTNFTKKFGEGQSCVRTIYNVELR 182 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G+ + + +F +R + +L+ VG + E+ L + +E AP G Sbjct: 183 VNGDFLIFEIEGNAFTWNMVRCIIAALEAVGSRHRSVEWFEEMLNPEKHRERIEPAPAYG 242 Query: 239 LYFDSVEYS 247 L ++YS Sbjct: 243 LILKDIKYS 251 >gi|150390096|ref|YP_001320145.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] gi|149949958|gb|ABR48486.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF] Length = 248 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 4/249 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y M+I Y+G Y G+ + K+ SIQG +E + + E V V A TD+GVH+ Sbjct: 1 MQNYKMMIAYDGRKYTGYNKSKDNLEKSIQGKLELILSKLYEEEVEVISAVSTDAGVHSK 60 Query: 59 RQVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ +F + YL I + + + Y Sbjct: 61 GQIVNFIAPNSRLDEKEIFDYFEKYLTDDIIILSVETADERFHSRYLMKSATYEYRLWKK 120 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 E+ L+ +++D ++ A ++LVG HDF F + S +T+ DV Sbjct: 121 DAPNRPLFERQYVNLMNQTVDVTKIKKAGKYLVGEHDFLAFTTNRKTTKSI-KTMVSLDV 179 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I I + A FL R VG+L +G G+ +EKA ++++ + G A Sbjct: 180 METRNEIIITMTANGFLLNMERVIVGTLIQIGLGQLPMNTIEKAFESKNMNDVGHKASAG 239 Query: 238 GLYFDSVEY 246 L SVEY Sbjct: 240 ALCLLSVEY 248 >gi|308233892|ref|ZP_07664629.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|328943600|ref|ZP_08241065.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] gi|327491569|gb|EGF23343.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829] Length = 311 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 14/255 (5%) Query: 6 MIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y G+ + G+ Q S++G + +A+ + + AGRTD+GVHA Q F Sbjct: 46 IRFGYVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTDAGVHAHAQYVSF 105 Query: 65 DLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + AL+ +I L + +D +Y + + Sbjct: 106 PITQSELGMSKHKIMSALSGLCPDDISIRTLYRAPLDFSARFSACERSYTYRIALGPLKP 165 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----------SSPIRT 171 L E + ++M A ++L G H+F +F Sbjct: 166 ILTHEFVWWVKNIPHVCMDDMNAAGEYLAGEHNFKSFCKASSAQLLEEQGLSLNRCLTSI 225 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D ++ + + +FLH +R SL VG G ++ L+ Q R Sbjct: 226 KVSRDYIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQDVLRQQTRTAAA 285 Query: 232 PLAPPEGLYFDSVEY 246 AP +GL + V Y Sbjct: 286 MTAPAQGLTLERVGY 300 >gi|313836079|gb|EFS73793.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA2] gi|314929615|gb|EFS93446.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL044PA1] gi|314970609|gb|EFT14707.1| tRNA pseudouridine synthase A [Propionibacterium acnes HL037PA3] Length = 279 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I V G + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLGVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVLDPDVVVKSIRSVPDEFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHF 175 + +P+ LD + + A L+G DF F A++ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAFCKYREGATTIRTLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ L++ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219] Length = 273 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 80/249 (32%), Positives = 106/249 (42%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y GS Y G Q Q S+I+G I +A+ + +GRTD+GVHA Sbjct: 1 MRVALKIAYIGSSYRGSQVQPGVSTIEGKIFEALQSLEIIEDPSSARFVSSGRTDTGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV FD + + + + +N+ L I + + VD FH R AI R+Y Y Sbjct: 61 MGQVVAFDTDKPK--LAIPRVINSKL--PGDIWAWSRAEVDSDFHPRRYAINRTYRYITP 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D +R A L G HDF F S IR I+ DV Sbjct: 117 S----------------MDADISKLRAACSILEGSHDFANFC-FRDTGRSTIRRIEKIDV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNL+ I + A SFL IR V L LVG G LE L +E A P Sbjct: 160 RLAGNLLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLDPASYEEGIKPAKPY 219 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 220 GLILTNVNY 228 >gi|153854831|ref|ZP_01996054.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] gi|149752533|gb|EDM62464.1| hypothetical protein DORLON_02059 [Dorea longicatena DSM 13814] Length = 245 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 M + IEY+GS Y GW R ++G++I I + + +T E + + RT+ GVH Sbjct: 1 MRNIKLTIEYDGSRYQGWTRLGKDESGNTISNKITEVLKKMTEEDDLELFCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q+A+F + LN YL I+I+++ V ++FHA+ +A ++Y+YR+ Sbjct: 61 AYAQIANFKTSSSTTTQNIKHYLNRYL--PMDIAIIDVKEVPERFHAQLNATSKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + + D M+ AA+ L GRHDF F S + S +R I D Sbjct: 119 TIDDVPSVFDRKYTYHCYRIPDKRLMQQAAEKLTGRHDFRNFSSAK-KTKSTVREIFDID 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + ++I + A FLH R VG+L +G G + D++ E P Sbjct: 178 IYGDIEEMQILIHADDFLHNMARIIVGTLMDIGLGNRSVQDIDDIFAG--ILEASAPCDP 235 Query: 237 EGLYFDSVEY 246 +GLY + Y Sbjct: 236 KGLYLQEITY 245 >gi|162456345|ref|YP_001618712.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] gi|161166927|emb|CAN98232.1| tRNA pseudouridine synthase A [Sorangium cellulosum 'So ce 56'] Length = 281 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 7/245 (2%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G + G+ RQ++ ++ G + A+ ++ I + GA RTD+GVHA Q FD Sbjct: 2 LSVAYDGRPFAGFARQRDQRTVSGELLGALRVIDPGIREIRGASRTDAGVHARDQRVAFD 61 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 P A +L D I I ++V F RF ++R+ Y Y I+ Sbjct: 62 TTAPLPPRGWVLATARHL--PDEIVIRRAAVVRLGFSPRFESLRKRYRYLILRDLVRDPF 119 Query: 126 EKGRAWLIPKSLD--CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---VNSF 180 RAW + D E R A G HDF FR+ + ++ +RT+ + + Sbjct: 120 LSRRAWRVEGITDEAIERARAEALAAKGTHDFAAFRTSADERTTTVRTLYGVELSLDPAD 179 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ I V +FLH +R VG+L V G + +AL + DR++ G APP+GLY Sbjct: 180 PRVVRIDVEGNAFLHNMVRILVGTLMDVARGHLAPGAIARALSSLDRRDAGITAPPDGLY 239 Query: 241 FDSVE 245 + + Sbjct: 240 LERIH 244 >gi|328906179|gb|EGG25954.1| tRNA pseudouridine synthase A [Propionibacterium sp. P08] Length = 279 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 7/251 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHAL 58 M R+ + I Y+G+ + GW Q + ++QG +E+ I V + AGRTD+GVHA Sbjct: 1 MTRWRLDIAYDGANFSGWAVQPDRRTVQGDLERWIPRVLRLSVPTPLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH DL + + L+ L + + + ARFSA+ R Y+YR+ Sbjct: 61 GQVAHVDLPDGVDTSSMLRRLSRVLDPDVVVKSIRSVPDEFD--ARFSALWRRYVYRLWD 118 Query: 119 RQAPLALEKGRAW-LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHF 175 + +P+ LD + + A L+G DF F A++ Sbjct: 119 ESSRPDPVTRFHVASVPRHLDLDRLNAAGASLLGLRDFAAFCKYREGATTIRTLLDCHAE 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ +E+ V A +F H+ +RS VG+L V G+ L++ + R + P Sbjct: 179 RLDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGQRNQGWLDEVAASASRASSVLVMP 238 Query: 236 PEGLYFDSVEY 246 GL + V Y Sbjct: 239 ACGLTLEEVGY 249 >gi|212697539|ref|ZP_03305667.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] gi|212675538|gb|EEB35145.1| hypothetical protein ANHYDRO_02112 [Anaerococcus hydrogenalis DSM 7454] Length = 242 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 3/219 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + I+Y+GS + G+Q QK+ ++Q +E+AI VTGE + +GRTDSGVHA Sbjct: 4 QNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEMY 63 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +F ++ L YL I L+ VDK FHARFS ++Y Y I + Sbjct: 64 VNFLTAKDIRADKFHFHLKKYL--PADILALSSKKVDKNFHARFSVKTKTYKYVISLEKI 121 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + I LD + ++ + L S + IR ID Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILD 181 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 N++ + A SFLH Q+R GSL + GK + D + Sbjct: 182 NNILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFK 220 >gi|225568181|ref|ZP_03777206.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] gi|225162900|gb|EEG75519.1| hypothetical protein CLOHYLEM_04255 [Clostridium hylemonae DSM 15053] Length = 245 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 9/250 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 M + IEY+GS Y GW R +++ +++ I + + +TGE I+ ++ RT+ GVH Sbjct: 1 MRNIRLTIEYDGSRYQGWCRLGKEESNNTVSNKIIEVLRKMTGEYIIELNCGCRTEVGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + + + LN YL I+I N+ V +FHA+ +A ++Y+YR+ Sbjct: 61 AYAQVANFKTDSDMDILEIKHYLNRYL--PMDIAITNVEDVPDRFHAQLNATSKTYVYRM 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 P ++ + K D + M+ A+ +G+HDF F ++ + + ++ I + Sbjct: 119 TIDDVPSVFDRKYTYHCFKIPDKKLMQQASLLFIGKHDFKNFSTVK-KNKTTVKEIFEIE 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V ++I + A FLH R VG+L +G G D+E+ Sbjct: 178 VYGDTEEMQILIHADDFLHNMARLVVGTLLEIGFGTRKKEDIEEIFAGTKTPSS--PCDA 235 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 236 KGLYLQEVSY 245 >gi|13507935|ref|NP_109884.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae M129] gi|2499079|sp|Q50291|TRUA_MYCPN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1215692|gb|AAC43685.1| hypothetical 28k protein (alkaline endoglucanase); GT9_orf321 [Mycoplasma pneumoniae] gi|1674340|gb|AAB96283.1| pseudouridylate synthase I [Mycoplasma pneumoniae M129] gi|301633310|gb|ADK86864.1| tRNA pseudouridine synthase A [Mycoplasma pneumoniae FH] Length = 243 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 6/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ YNG+ + GW +Q ++QG IE+ + L+ + ++G+GRTD GVHA+ Q Sbjct: 1 MPRYLAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQTPINIYGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 H DL + L LN I + L V +FHARF+ + Y Y +I + Sbjct: 61 TFHVDLPDKLPLKQLIAKLNQL--NYPDIFVKALVPVAPRFHARFAVKTKVYEY-LINTR 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + W LD + +GR DF +F + RTI V Sbjct: 118 AFNPAQYHTVWQYNHPLDLAQLEADTTLFLGRKDFWSFSTAS--QKDTQRTISKIIVQQD 175 Query: 181 GNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + FL QIR V SL + + +++ + C AP GL Sbjct: 176 HTGTVKLTFFGNGFLRNQIRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGL 235 Query: 240 YFDSVEY 246 Y +V Y Sbjct: 236 YLKTVLY 242 >gi|84494739|ref|ZP_00993858.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] gi|84384232|gb|EAQ00112.1| tRNA pseudouridine synthase [Janibacter sp. HTCC2649] Length = 283 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 77/260 (29%), Positives = 116/260 (44%), Gaps = 14/260 (5%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVH 56 M R + + Y+G+ + GW Q +++G + A+ + E V + AGRTD+GVH Sbjct: 1 MTLLRVRIDLAYDGTDFSGWAAQPGRRTVEGELSAALTTLLRAPEPVRLTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSA 107 A QV H D+ + + A L + + +S F ARF+A Sbjct: 61 ARGQVVHADVDDTLYAALPGRSSRSPEEAARTRLAGILPSDVVVRAVSRAPDGFDARFAA 120 Query: 108 IRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 +RR YLYRI A L +G ++ LD M AA LVG HDF F A+ Sbjct: 121 LRRRYLYRICDDPGALDPLRRGDTVVLKDPLDVAAMNEAAGRLVGLHDFAAFCKKRDGAT 180 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + +D+ V + +E VVA +F H+ +R+ VGS+ VG G+ + L Sbjct: 181 TVRTLLDYSWVRAPDGTVEATVVADAFCHSMVRALVGSVVPVGMGRAEVDFPREVLTGGA 240 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R + P GL + V Y Sbjct: 241 RDPRVKVMPAHGLSLEEVTY 260 >gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A] gi|30913395|sp|Q8TU65|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A] Length = 269 Score = 135 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q N +++ + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPNVETVEKELFKALRNLSIIESPKSADYTCAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + + +N+ L I + V F AR SA+ R Y Y + Sbjct: 61 LGQVVAFDTEKP--NLAIPRVINSEL--PPAIWAWAHAEVPYYFDARRSAVSRHYHYVM- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR A++ L+G HDF F + S +RT++ +V Sbjct: 116 ---------------SGEDYDISKMREASKLLLGTHDFENFSRSN-GEKSTVRTLERINV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G + +I VV SFL +R V +L ++G+G + L + L + +E APP Sbjct: 160 RVDGEITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYEEGIEPAPPY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLTLMGVNY 228 >gi|26554422|ref|NP_758356.1| tRNA pseudouridine synthase A [Mycoplasma penetrans HF-2] gi|42559813|sp|Q8CXQ1|TRUA_MYCPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|26454432|dbj|BAC44760.1| tRNA pseudouridine synthase [Mycoplasma penetrans HF-2] Length = 241 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 + Y + I Y+GS + G+ +QK N ++Q +EK + L + G+GRTD VHA+ Sbjct: 1 MTYKLKISYDGSFFRGYAKQKDENLITVQSELEKYLSLFFNTKISTFGSGRTDKYVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q F ++ P + LN+ L I + ++ V FHARFS ++Y+Y +I Sbjct: 61 QTVSFKCDSDYDPKSIQNFLNSKLTN---IYVNSIEKVPNSFHARFSIKSKTYMY-VINT 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 ++ + KS+D + +G DF +F + + ++ RTI + Sbjct: 117 GEFDVFKQRYEYQYNKSIDIKKCEDIINLFIGTKDFLSFSTSKLENTT--RTIRWIRIIK 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I + FL +R VG + + K T ++ + + P GL Sbjct: 175 KNKKIYIFINGEGFLRNMVRMIVGIILTYCENKITYQEVLDLFKNPKKGSAVIKVPGCGL 234 Query: 240 YFDSVEY 246 Y Y Sbjct: 235 YLYRTIY 241 >gi|303328364|ref|ZP_07358802.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] gi|302861694|gb|EFL84630.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 14/227 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 +R +++ Y G+GY GWQ Q+ +IQG +E A+ ++ G V VHG+GRTD+GVHA Sbjct: 1 MRLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHGSGRTDAGVHAH 60 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAH D+ + ++LNA L I IL FHAR A+R++Y+Y+ Sbjct: 61 GQVAHCDVPDAKAGLRWQRSLNALL--PPEIRILAAEPAAADFHARKDALRKTYVYQFWQ 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A + + + LD E MR A HL+G HDF ++ S RT+ +++ Sbjct: 119 ERAFVPPQLAPFFWNCGPLDVEAMRAALPHLLGEHDFAGLQNAGTDMESTTRTVFRAELD 178 Query: 179 SFGNLIEIR---------VVARSFLHTQIRSFVGSLKLVGDGKWTST 216 V A FL +R+ G L G GK Sbjct: 179 IPPPCEFYPPHAPGLRLTVTANGFLKQMVRNMAGLLAACGQGKIRPE 225 >gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE] Length = 279 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 23/246 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--FLVTGEIVVVHGAGRTDSGVHALRQ 60 + + Y G+ + G Q Q +++G + K + + GE V +GRTD+GVHAL Q Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALGQ 73 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F V + + + +N+ L + + ++V F R A+ R+Y Y + Sbjct: 74 VIAF--VPKNDKLTEPRIINSVL--PADMWVYAKAVVPDDFDPRRHAVSRTYRYLLYAPD 129 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L P + D N +P+RT+ V Sbjct: 130 VIERRIVTYSQLFPGTHDFTNFSSV-----------------EPNKNPVRTVKSISVTKR 172 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G++ I + A SFL +R V L+LVG K + +E+ L+ + +E P A GLY Sbjct: 173 GDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPALAAGLY 232 Query: 241 FDSVEY 246 VEY Sbjct: 233 LMKVEY 238 >gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084] Length = 284 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 13/254 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G+G+ G+ Q ++ G + A+ + V + AGRTD+GV+AL Q Sbjct: 22 VRLGYRGAGFAGFAEQPGQRTVAGELRTALETLLHRPVDLTCAGRTDAGVNALAQYVSLP 81 Query: 66 LVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + R + + +++ + D +S+ L D F ARF A+ R Y YR+ A Sbjct: 82 VTRGELEREGRRLVSSLVALTPDDLSVRGLYKADVSFSARFDALERGYRYRVACGSARPV 141 Query: 125 LEKGRAWLIPKSLDCENMRIAAQH---LVGRHDFTTFRSI---------HCQASSPIRTI 172 L G W + D + + L + ++ Sbjct: 142 LSWGHTWWLRSVADLDVDAMGEAASALLGEHDFRSFCKASSAGLLEADGRSTCRRLSAVS 201 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + L+ I V +FLH +R G+L VG G ++ + +AL A DR GP Sbjct: 202 VVRAREAGEELVAIDVRGNAFLHNMVRVIAGTLVEVGRGHRDASWVARALAAHDRSAAGP 261 Query: 233 LAPPEGLYFDSVEY 246 AP GL F+ V Y Sbjct: 262 TAPAHGLTFEWVGY 275 >gi|218658453|ref|ZP_03514383.1| tRNA pseudouridine synthase A [Rhizobium etli IE4771] Length = 244 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 132/215 (61%), Positives = 165/215 (76%), Gaps = 2/215 (0%) Query: 33 KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLK-ISDTISI 91 + + +TGE V V GAGRTDSGVHA+ QV H DL +EW P L ALNA+L+ + +SI Sbjct: 12 RVLS-LTGETVSVRGAGRTDSGVHAMGQVIHVDLSKEWSPYQLQNALNAHLRLAGERVSI 70 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 L++ V + F ARFSA+RR YLYRI++R+APLALE G+AW +PK+LD E M AAQ LVG Sbjct: 71 LDVEAVPEFFDARFSALRRHYLYRIVSRRAPLALEAGKAWWVPKTLDHEVMHAAAQRLVG 130 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 RHDF+TFRS HCQA+SP+RT+D DV G LIEIR A+SFLH QIRSF G+LKL G+G Sbjct: 131 RHDFSTFRSAHCQANSPVRTLDRLDVTRSGALIEIRATAQSFLHNQIRSFAGTLKLAGEG 190 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 KWT D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 191 KWTPDDVEAALEARNRKACGPVAPPDGLYFLQVDY 225 >gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] gi|34395892|sp|Q8PWT1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1] Length = 269 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + + Y G+ + G Q Q + +++ + KA+ + + + AGRTD+GVHA Sbjct: 1 MRVALKLAYIGTEFHGSQIQPSVETVEKELFKALRNLRIIESPKSANYICAGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD R + + + +N+ L TI + + V F AR A+ R Y Y I Sbjct: 61 LGQVIAFDTDRP--NLAIPRIINSGL--PPTIWVWAHAEVPYDFDARRHAVSRHYRYVI- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR A++ L+G HDF F + S +RT++ +V Sbjct: 116 ---------------SGEGYDISKMREASKLLLGTHDFENFSRSN-GEKSTVRTLERINV 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G++ +I VV SFL +R V +L ++G G + L + L +E AP Sbjct: 160 RVDGDITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIYEEGIEPAPAY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLTLMGVNY 228 >gi|224010986|ref|XP_002294450.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] gi|220969945|gb|EED88284.1| hypothetical protein THAPSDRAFT_264420 [Thalassiosira pseudonana CCMP1335] Length = 264 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 109/265 (41%), Gaps = 26/265 (9%) Query: 7 IIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 + Y+G+ + GWQ Q S++QG IE+ + + V GAGRTD+GVHA Q HFDL Sbjct: 1 RVAYHGTPFNGWQLQPGRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDL 60 Query: 67 VREWVPVIL-------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +P ++N + + + L L+ +HA A + Y YR+ Sbjct: 61 FHDEIPFKPPTPPEILQHSMNRMMPLDIRMFHLQLAPYTP-WHAIQRAQSKWYSYRLTLG 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF---------RSIHCQASSPIR 170 + LD E + Q VG HDF F + + + +R Sbjct: 120 PTLWNPMERFTRTHFVHLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGKRINTVR 179 Query: 171 TIDHFDVNSFGNLIEIRVVAR--------SFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 T+ ++ L I L+ +R+ VG+ V G+ L + L Sbjct: 180 TVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELL 239 Query: 223 QAQDRKECG-PLAPPEGLYFDSVEY 246 + DRK+ APPEGL + V Y Sbjct: 240 KIPDRKDNPSKPAPPEGLTLECVYY 264 >gi|94968472|ref|YP_590520.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] gi|94550522|gb|ABF40446.1| tRNA pseudouridine synthase A [Candidatus Koribacter versatilis Ellin345] Length = 257 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 82/259 (31%), Positives = 116/259 (44%), Gaps = 15/259 (5%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + + + Y+G + GWQ Q +IQG++ + I +TGE + G+GRTD+GVHAL Sbjct: 1 MPRNFKITLAYDGHEFHGWQIQPGKPTIQGTLAETIERITGEQTLPQGSGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA L L ALN L S + FHAR SA ++Y YRI Sbjct: 61 QVASVALQTPIPADGLHIALNDKLPPSIRALTVG--EAAPDFHARHSAKGKTYRYRIYRA 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD--- 176 W P LD M+ A + G HDFT+F + + IR + D Sbjct: 119 AICSPFLAHYVWHYPWRLDESVMQSATAFIQGEHDFTSFAASDPDRAQRIRDAEDEDGPS 178 Query: 177 ---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + G+ + V FLH +R+ VG+ G + + + K L+ + R Sbjct: 179 NVRTIYDAVWRTEGHELIFEVRGNGFLHHMVRNLVGTFVDFGKWQHPAESMAKILREKSR 238 Query: 228 KECGPLAPPEGLYFDSVEY 246 GP AP GLY +VEY Sbjct: 239 SAAGPAAPASGLYLVNVEY 257 >gi|325262993|ref|ZP_08129729.1| tRNA pseudouridine synthase A [Clostridium sp. D5] gi|324032087|gb|EGB93366.1| tRNA pseudouridine synthase A [Clostridium sp. D5] Length = 244 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 122/249 (48%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M +++EY+G+ Y GWQR G +++ + + I +T E V + RT+ GVHA Sbjct: 1 MHNIKLVLEYDGARYQGWQRLGKGESTNTVANKLLEVIHKMTAEDVELFCGARTEVGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV +F + + + LN YL I++L+ + ++FHA +A R+Y YRI Sbjct: 61 YGQVVNFKTTSDMKTDEIRQYLNRYL--PMDIAVLSAEEMPERFHASLNAKSRTYQYRIA 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 P + + ++ D M+ AA L GRHDF F ++ ++ S + I + D+ Sbjct: 119 IGAVPSVFNRKYTYYAFRTPDIGIMQQAALLLAGRHDFKNFSTVK-KSKSTEKEIYNIDI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + I+I + A FLH R +G+L +G GK +E + ++ E P+ Sbjct: 178 YGDTDEIQISLRANDFLHNMPRMIIGTLMDIGLGKRKMECIEAIFKGEE--EASAPCDPK 235 Query: 238 GLYFDSVEY 246 G++ +V Y Sbjct: 236 GMFLKNVGY 244 >gi|116075742|ref|ZP_01473001.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] gi|116067057|gb|EAU72812.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9916] Length = 278 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+ G+S+Q ++++AI + V AGRTD+GVHA Q Sbjct: 3 RRIALSLQYEGSAFCGWQRQRQGNSVQAALDEAISQLDPIRPVHTVAAGRTDAGVHAAGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L TI + +HA +SA R Y Y I + Sbjct: 63 VVHFDCCGPIPAWRWAPALNGRL--PGTIRVREAVERPLDWHACYSATYRRYRYTIYNGR 120 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD M A Q L+G HDF F + + TI + Sbjct: 121 RPNLFLTPWTWHRYQARLDDSLMGEALQGLLGLHDFGAFMRAGSRRAHSRTTIQDVSLER 180 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+L+ + + A FL+ +R +G L VG+ + + E+ + + R E APP+GL Sbjct: 181 EGDLVTVEIQASGFLYGMVRLLMGQLVAVGEHRLSLEAFERRWRERRRSEVKDAAPPQGL 240 Query: 240 YFDSVEY 246 Y Sbjct: 241 CLLRAGY 247 >gi|317483422|ref|ZP_07942412.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] gi|316915108|gb|EFV36540.1| tRNA pseudouridine synthase A [Bifidobacterium sp. 12_1_47BFAA] Length = 303 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ V Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R A+ + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFADKMAEPVREGSSGPIAP-QGLTLEHIAY 284 >gi|311115139|ref|YP_003986360.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] gi|310946633|gb|ADP39337.1| tRNA-pseudouridine synthase I [Gardnerella vaginalis ATCC 14019] Length = 310 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 111/288 (38%), Gaps = 44/288 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------IVVVHGAGRTDSG 54 +R + + Y+G ++GW RQ N ++QG++E A++ V + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALYKVLRVHDGDSCFPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-----------ALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ + + + L L +I ++++ Sbjct: 61 VHASYQVCHLDVEDDILQNCVGHTNLTPVKALEYRLRGVLPKDISIHSVSIAPSGFDARF 120 Query: 104 RFSAIRR-SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 + R+ +G I LD +M AAQ +VG HDF +F + Sbjct: 121 SALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQAAQMIVGLHDFGSFARPN 180 Query: 163 CQASSPIRTIDHFDVNSF-----------------------GNLIEIRVVARSFLHTQIR 199 ++ LIE +VA +F H +R Sbjct: 181 PGGTTIRCVKKAVWNRVCLDGCAPVGSSIASRSTGNIPPIEHGLIEFTIVADAFAHNMVR 240 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 S V + VG GK + + ++ R+ GP+A GL + VEY Sbjct: 241 SLVQACVQVGCGKRSVDWFKDKIENPIREGSTGPIA-SNGLTLEYVEY 287 >gi|126654438|ref|ZP_01726177.1| pseudouridylate synthase I [Bacillus sp. B14905] gi|126589112|gb|EAZ83311.1| pseudouridylate synthase I [Bacillus sp. B14905] Length = 214 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 4/216 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M R +II Y+G+ + G+Q Q ++Q IE+ + ++ E V V +GRTD+ VHA Sbjct: 1 MRRLKVIISYDGTLFSGYQVQPGERTVQAEIERVLAIMHKEEKVKVTASGRTDARVHATG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q HFD KALN L I ++++ V+ FHAR+S + Y Y Sbjct: 61 QTLHFDTPLAIPADKYRKALNVQL--PRDIRVMSVEEVEHDFHARYSVTGKRYRYIWSCE 118 Query: 120 QAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + D M+ AAQ ++G HDF+ F + + +RT+ Sbjct: 119 PIQNPFRRHYTVETNGVKPDVVAMQKAAQAIIGTHDFSCFCASNTSVQDKVRTVTSLQFE 178 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 G + + + FL+ +R G+L VG + T Sbjct: 179 WHGEELHMVIEGSGFLYNMVRIIAGTLWEVGIDRRT 214 >gi|302869940|ref|YP_003838577.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315501401|ref|YP_004080288.1| tRNA-pseudouridine synthase i [Micromonospora sp. L5] gi|302572799|gb|ADL49001.1| tRNA-pseudouridine synthase I [Micromonospora aurantiaca ATCC 27029] gi|315408020|gb|ADU06137.1| tRNA-pseudouridine synthase I [Micromonospora sp. L5] Length = 277 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 4/249 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDSGVHALR 59 R + + Y+G+ + GW Q ++ G + + + LV G + AGRTD+GVHA Sbjct: 5 TRLRLDVSYDGTDFSGWAPQPARRTVAGVLMQTLDLVLGAGTATGLTVAGRTDAGVHATG 64 Query: 60 QVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL + + + ++ V F ARFSA R Y YR+ Sbjct: 65 QVCHLDLPTPVWREHEGRLLRRLARLLPPDVRVRAMTEVPADFDARFSATFRRYEYRVTD 124 Query: 119 -RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +G PK LD + AA LVG HDF + A++ Sbjct: 125 APWGAEPLRRGDTLAWPKPLDLAALNAAAAGLVGEHDFAAYCRRKENATTLREVTRLDWR 184 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ V A +F +RS VG++ + GDG+ L ++R +AP Sbjct: 185 RDPDGILVATVQADAFCQNMVRSLVGAMLVAGDGRRPVQWPAGLLTRRERSSEVTVAPAH 244 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 245 GLALVAVGY 253 >gi|168333393|ref|ZP_02691673.1| tRNA pseudouridine synthase A [Epulopiscium sp. 'N.t. morphotype B'] Length = 259 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 76/254 (29%), Positives = 110/254 (43%), Gaps = 16/254 (6%) Query: 5 CMIIEYNGSGYFGWQRQKNGS-------SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 I+ Y G+ Y G+ RQ +I +E AI +T + V + GAGRTD+GVHA Sbjct: 10 KFIVAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHA 69 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV ++ + L ALN L + I + + FH FS R+ Y Y+I+ Sbjct: 70 LAQVCIANIDTQIGNSGLLLALNNKLPVDIVIKSIEDAEE--GFHPTFSGKRKMYRYQIL 127 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P LD E M++AA LVG HDF F + + Sbjct: 128 NTTVSCPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTIF 187 Query: 178 NS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + +I+I V FL+ +R G+L G G+ + K L+ ++RK G Sbjct: 188 DIVVARGDDEIIKIDVTGDGFLYNMVRIIAGTLIDKGLGRGMP--IAKILEMRERKNAGK 245 Query: 233 LAPPEGLYFDSVEY 246 AP GL VEY Sbjct: 246 TAPASGLTMIGVEY 259 >gi|148238745|ref|YP_001224132.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] gi|147847284|emb|CAK22835.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7803] Length = 297 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 114/247 (46%), Gaps = 4/247 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQ 60 R + ++Y GS + GWQRQ+ G+S+QG +E+AI + V AGRTD+GVHA Q Sbjct: 22 QRIAISLQYAGSFFCGWQRQRQGTSVQGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQ 81 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD ALN L +I + +HA +SA R Y Y + + Sbjct: 82 VVHFDSSGPIPASRWAPALNGRL--PASIRVREAVERPLSWHACYSATYRRYRYTLYNGR 139 Query: 121 APLALE-KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 P LD + M A + ++G HDF F+ + + TI V Sbjct: 140 RPNLFLAPWTWHRYQARLDEQAMAAALEGMLGSHDFAAFQRAGSRRAHSRTTIQDVSVQR 199 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI++ V A FL+ +R +G L VG+ + T E+ + + R E APP+GL Sbjct: 200 RGDLIDLEVQASGFLYGMVRLMMGQLVAVGEHRLTPDQFERRWRERRRDEVKDGAPPQGL 259 Query: 240 YFDSVEY 246 Y Sbjct: 260 CLLRAGY 266 >gi|184200291|ref|YP_001854498.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] gi|183580521|dbj|BAG28992.1| tRNA pseudouridine synthase TruA [Kocuria rhizophila DC2201] Length = 331 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 116/304 (38%), Gaps = 59/304 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW RQ S+Q ++E A+ LV AGRTD+GVHA Q Sbjct: 8 VRLRIDLAYDGAPFRGWARQPGLPSVQEAVEDALCLVFRVRCPTVVAGRTDTGVHARSQT 67 Query: 62 AHFDLVREWVPVILCK-------------------------------------------- 77 H D+ RE + Sbjct: 68 VHVDVPREAWERVTRSRGTGRVAGALPASPDPAHASAPAATTGTVAASDARGPVDPVLAR 127 Query: 78 ----ALNAYLKISDTISILNL----------SIVDKQFHARFSAIRRSYLYRIIT-RQAP 122 ALN L + F ARFSA+ R+Y YR+ R Sbjct: 128 RLNGALNRVLGKDRADRGWEPVVGAVVVQSVAQAPPGFDARFSALSRAYRYRVADARTGH 187 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 L + +W + LD M A + L+G HDF ++ A++ Sbjct: 188 DPLTRTFSWWVDPQLDVAAMDGAVRELLGLHDFLSYCKPRAGATTVRELQRATVDRDEHG 247 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I + + A +F H +RS VG+L VG+G+ + + L+A+ R +AP GL D Sbjct: 248 MITVALTADAFCHHMVRSVVGALVRVGEGRHGPSWPGERLRARTRDAAIVMAPAHGLVLD 307 Query: 243 SVEY 246 +V Y Sbjct: 308 AVAY 311 >gi|238916468|ref|YP_002929985.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] gi|238871828|gb|ACR71538.1| tRNA-pseudouridine synthase I [Eubacterium eligens ATCC 27750] Length = 245 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 7/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M Y + IEY+G Y GWQR + ++I+ + + I +TGE V ++ RT+ GVHA Sbjct: 1 MYNYRIEIEYDGGRYDGWQRLGKDASTNTIESRLCEIIARMTGETVDMYAGSRTEKGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q A+F L +E + + LN YL I++++++ D++FH++ +A + Y YR+ Sbjct: 61 LCQTANFKLEKEVKAIEIKNYLNRYL--PRDIAVMSVTEADERFHSQLNAKSKIYEYRLD 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T + A+ D + MR AA + G+HDF F + ++ S +TI V Sbjct: 119 TGNVANVFRRKYAYHTFDKPDFDAMRKAAGYFEGKHDFKAFTTAK-KSKSTEKTIKKISV 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G IR+ A FLH R +G + VG+G D+++ L ++ + P A Sbjct: 178 EYEGARAYIRIEADDFLHNMARYIIGMMLDVGNGIKKPEDVKRCLDGENIQMSLP-AESY 236 Query: 238 GLYFDSVEY 246 GL+ V Y Sbjct: 237 GLFLVKVVY 245 >gi|225010595|ref|ZP_03701066.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225005424|gb|EEG43375.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 218 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 4/216 (1%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTIS 90 +E+A L+ + + GAGRTD+GVHA + VAHFD + I+ LNA+L +I Sbjct: 1 MEQAFSLLLATPIELMGAGRTDAGVHAKKMVAHFDTELGFDKQIIKDRLNAFLAADISID 60 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + V ++ HARF+A R+Y Y ++ ++ + A + + LD ++M AAQ L+ Sbjct: 61 QILA--VTQETHARFTATSRTYEYIVVNQK--DPFQHHGAHYVFQPLDIQSMNKAAQILL 116 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 G DF F + + I I H + + + A FL +R+ VG+L +G Sbjct: 117 GEKDFECFSKSNSDVHTFICDITHAKWVATKGQLVFTITANRFLRNMVRAIVGTLLEIGT 176 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK TD+ L+ + R + GP P +GLY + Y Sbjct: 177 GKRPVTDIPLLLETKSRSKAGPSVPAKGLYLTQINY 212 >gi|301167543|emb|CBW27126.1| putative tRNA pseudouridine synthase [Bacteriovorax marinus SJ] Length = 267 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 15/247 (6%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVR 68 YNG YFGWQ+QKN +IQ +IE A+ ++ E + G+ RTD+GVH+ V + Sbjct: 11 YNGENYFGWQKQKNFKTIQDTIEDALRVIAPSEKIRTMGSSRTDTGVHSRANVCFIQIQE 70 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + P L K LN L I+ + + + Y+++I Sbjct: 71 DLEPHELTKKLNQELPNDIRITKCERTYRHFKVVYFAKRKQYLYIFKINNSD-----HST 125 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---------NS 179 I ++LD E M+ AA+ +G HDF F + R I + N+ Sbjct: 126 FYHSIEENLDIEKMKEAAKVFIGTHDFRNFCHKVSENVDKKREIFECKIIEDQDFISENN 185 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + FL +R +GSL +G GK T + +++AL + + K+ G +AP GL Sbjct: 186 CHGSYALVIEGSGFLKQMVRIIMGSLINIGLGKTTLSQIQEALVSTEFKKTGFIAPGGGL 245 Query: 240 YFDSVEY 246 Y + +E+ Sbjct: 246 YLNEIEF 252 >gi|322691842|ref|YP_004221412.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456698|dbj|BAJ67320.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. longum JCM 1217] Length = 303 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ V Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R A+ + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAY 284 >gi|227546504|ref|ZP_03976553.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213053|gb|EEI80932.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 305 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ V Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 122 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R A+ + Sbjct: 123 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 182 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + L+ +VA +F +RS V Sbjct: 183 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 242 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 243 GSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAY 286 >gi|23466158|ref|NP_696761.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|46190438|ref|ZP_00121526.2| COG0101: Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|189440597|ref|YP_001955678.1| pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239621038|ref|ZP_04664069.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454842|ref|YP_003661986.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|312133902|ref|YP_004001241.1| trua [Bifidobacterium longum subsp. longum BBMN68] gi|322689901|ref|YP_004209635.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] gi|42559815|sp|Q8CY46|TRUA_BIFLO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|238692041|sp|B3DQE2|TRUA_BIFLD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|23326895|gb|AAN25397.1| tRNA pseudouridine synthase A [Bifidobacterium longum NCC2705] gi|189429032|gb|ACD99180.1| Pseudouridylate synthase [Bifidobacterium longum DJO10A] gi|239516139|gb|EEQ56006.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516444|emb|CBK70060.1| pseudouridylate synthase I [Bifidobacterium longum subsp. longum F8] gi|296184274|gb|ADH01156.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. longum JDM301] gi|311773196|gb|ADQ02684.1| TruA [Bifidobacterium longum subsp. longum BBMN68] gi|320461237|dbj|BAJ71857.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis 157F] Length = 303 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ V Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDAR 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R A+ + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLTVDEALDLELMNRAASLTIGLHDFGSFATPNP 180 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAP-QGLTLEHIAY 284 >gi|301094360|ref|XP_002896286.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262109681|gb|EEY67733.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 300 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 106/270 (39%), Gaps = 25/270 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNG-SSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVH 56 +R ++EY+G+ +FG Q Q ++Q IE A+F TGE + A RTD+GVH Sbjct: 30 VRRRCVVEYDGAAFFGSQAQDQPGALRTVQEVIEDALFRTTGEKGLPRLRFASRTDTGVH 89 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN-LSIVDKQFHARFSAIRRSYLYR 115 AL QV F + ALN L + ++ + F R R+ Y Y Sbjct: 90 ALGQVMVFVSQCIESDRVFRDALNTRLPDDVLCHSMTTMTEAEADFDPRSDTKRKRYEYE 149 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +I + W + K LD M+ A HL+ F + Q + + Sbjct: 150 LIVGGLRPVAHRRNVWYVHKPLDVAKMQEAIDHLMTPPTTKDFSAFTPQKAVDRERGNIC 209 Query: 176 DVNSFGNLIEIR-------------------VVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +++ + F + +R VG+L +G G+ Sbjct: 210 TISTIELHSTMMDDRGDAQYREDVATRIRLVFEGNRFRYKMVRILVGTLVDIGLGRLKPD 269 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 D+ L +Q+R + G AP +GL V+Y Sbjct: 270 DIPVILASQNRGKAGQGAPSQGLTLIWVKY 299 >gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] gi|121691685|sp|Q12VJ7|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242] Length = 275 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 107/249 (42%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y GS + G Q Q N +++G + K + + +GRTDSGVHA Sbjct: 1 MRVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV FD + + + +N+ L TI +IV + F R A+ RSY Y + Sbjct: 61 MGQVVAFDTDAP--NLAMPRVINSKL--PGTIWAWAHAIVPENFDPRRHALSRSYRYIL- 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D +R A++ L+G HDF+ F + + +R + D+ Sbjct: 116 ---------------YGEQFDISKIRSASKLLLGSHDFSNFSTSRGSKKT-VRIVKRIDI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 GNL I V A SFL +R V +L +VG G L L + +E A Sbjct: 160 RVSGNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGY 219 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 220 GLVLMDVNY 228 >gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2] Length = 299 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 108/249 (43%), Gaps = 10/249 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y+G+ Y G+ Q + ++ G + +A+ + + AGRTD+GVHA+ Q Sbjct: 44 LKLGYDGTRYSGFAEQPDRCTVAGEVRQAMETFLRRPIELICAGRTDAGVHAIGQHVSVA 103 Query: 66 L---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + E +A++A L IS+ + + F ARF A R+Y YRI Sbjct: 104 VLPAECEIPRARWLRAMDALL--PPDISVAGVFRARRGFSARFDARDRTYTYRIAAGSVR 161 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 AL + W LD MR AA LV + R+ R + D Sbjct: 162 PALIRPYVWWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRPTSRRVLDVDFAHES 221 Query: 182 NLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 L E + +FLH+ +R+ VGSL VG + L AL A+DR GP AP Sbjct: 222 ELGENVLAFTIRGNAFLHSMVRTIVGSLAEVGTHRRDPAWLADALAARDRAAAGPTAPAC 281 Query: 238 GLYFDSVEY 246 GL F V Y Sbjct: 282 GLCFMDVSY 290 >gi|89953446|gb|ABD83318.1| Fgenesh protein 88 [Beta vulgaris] Length = 278 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 9/238 (3%) Query: 18 WQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 WQ Q + ++Q +IEKA+ +T + + V GAGRTD+GVHA QVAHF + + Sbjct: 26 WQYQASPPTVQCAIEKALTKITHLDRKELSVVGAGRTDTGVHAWGQVAHFFTPFNYDSLD 85 Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 A L I + +S QFHARFSA + Y Y I + + Sbjct: 86 EVHAAFNGLL-PSDIRVREVSPASPQFHARFSAKGKIYRYSIYNSSFMDPFLRYHVYHST 144 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 L+ M AA++ G+HDFT F + + + PI+TI FDV G L+E+ V Sbjct: 145 YKLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVTERGPLLELEVEGSG 204 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEGLYFDSVEYS 247 FL+ Q+R+ V L +G + + L+ ++R+E PP GL SV+Y+ Sbjct: 205 FLYRQVRNMVALLLQIGREAIPPDIVPEILETKNRRELAKYTKSTPPHGLSLVSVKYN 262 >gi|320459238|dbj|BAJ69859.1| tRNA pseudouridine synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 303 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ Sbjct: 61 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R AA + Sbjct: 121 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 180 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + + L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 241 GSCIKVGSGRKSLEWFAGKMADPVREGSSGPIAP-QGLTLEHIAY 284 >gi|213693060|ref|YP_002323646.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524521|gb|ACJ53268.1| tRNA pseudouridine synthase A [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 305 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 100/285 (35%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q N ++QG+IE A+ V E + + AGRTD+ Sbjct: 3 MTRLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPADDAAEPLRLTVAGRTDT 62 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + + L A L I + ++ Sbjct: 63 GVHASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPAGFDAR 122 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + R AA + Sbjct: 123 FSALERTYVYRVADRSSEIDPRLRGCVLTVDESLDLELMNRAAALTIGLHDFGSFATPNP 182 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + + L+ +VA +F +RS V Sbjct: 183 GGTTIREVKTAYWRRVPITPLVPDAMASHEAYRTPSLESGLVVFTIVADAFARNMVRSLV 242 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ + + R+ GP+AP +GL + + Y Sbjct: 243 GSCIKVGSGRKSLEWFAGKMADPVREGSSGPIAP-QGLTLEHIAY 286 >gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 276 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 109/249 (43%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + I Y G+ Y G+Q Q + +I+ + + + + + G+GRTD+GV+A Sbjct: 1 MRIALKIAYIGTEYHGYQIQPDVPTIEKELFRTLEELKIITDPKSARYIGSGRTDAGVNA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV F+ + + + +N+ L +I + + + V F R A+ R Y Y + Sbjct: 61 LGQVVAFNTDNP--KLAIPRVINSKL--PPSIWVWSRAEVPDDFDPRRHAVSREYKYFVC 116 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++L + + L+ + D N S +RT++ D+ Sbjct: 117 GECLNISLLRKASKLLRGTHDFANFA-----------------TPDMDKSTVRTVERIDI 159 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G LI + + A SF+ +R V +L++VGD L++ L + +E AP Sbjct: 160 RVEGRLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLHPDEFEEGLEPAPAC 219 Query: 238 GLYFDSVEY 246 GL +V Y Sbjct: 220 GLLLKNVNY 228 >gi|168009447|ref|XP_001757417.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691540|gb|EDQ77902.1| predicted protein [Physcomitrella patens subsp. patens] Length = 299 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 119/238 (50%), Gaps = 11/238 (4%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 WQ QKN SIQ +E A+ T + + + GAGRTD+GVHA QVAHF + + Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95 Query: 75 LCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 +LN L I IL +S V FHAR+SA R++Y Y+ + A+ I Sbjct: 96 PLHTSLNGIL--PPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHI 153 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 S++ M AA + VG H+F+ F S + +R + F V+S G + V + Sbjct: 154 KNSVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGK 213 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG---PLAPPEGLYFDSVEY 246 SF++ Q+R+ VG L VG + + L +DR+E P+AP GLY SV Y Sbjct: 214 SFMYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGY 271 >gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon] Length = 275 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 105/251 (41%), Gaps = 28/251 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q +++G + KA+ + + AGRTD GVH Sbjct: 7 RVALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGILEDRKTANYSYAGRTDKGVH 66 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV FD + + +N L + I L ++ F+AR AIRR Y Y + Sbjct: 67 ALAQVVSFDT---LNQNMTPRMINTML--PNDIWALAIAKPHAGFNARKEAIRREYRYFL 121 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHF 175 + LD MR A++ L+G + + S I+ I Sbjct: 122 ---------------FLQTELDISRMRDASELLIGAHDFSNFSQRDGLEGKSLIKEIKQV 166 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 ++ I I + A FL +R V +L +VG GK + ++ L + +++ AP Sbjct: 167 NIVKSDLFIIIDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQDLLDLKIKEQ-IEPAP 225 Query: 236 PEGLYFDSVEY 246 GL V Y Sbjct: 226 AFGLVLKDVSY 236 >gi|242310521|ref|ZP_04809676.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] gi|239522919|gb|EEQ62785.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489] Length = 241 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 71/246 (28%), Positives = 106/246 (43%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ M I YNG+ + G+Q+QK+ S+ G +E+ V G + G+GRTD GVHA Q Sbjct: 2 MMKVAMKIAYNGANFCGFQKQKDRQSVSGFLEEVFGSV-GIFEKIIGSGRTDKGVHASAQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + + + + LK+ + I + VD FHARF A RR Y Y I Sbjct: 61 VISLKIPDFHKDLQKLQEI-LNLKLYPLVKIKKIWRVDDDFHARFDAKRRGYCYVISQEY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + L + ++ A +R I + Sbjct: 120 SPFIAPFAHYYCFQNVGIIKEALREFEGL--HNFKAFMKNDGSGAKGSVREIYKARLLKR 177 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G FL +QIR VG L + G +DL+K L +R P APP GL+ Sbjct: 178 GKFYIFLFWGNGFLRSQIRLMVGYLLEIDKGNLQISDLKKQLL-GERIFSIP-APPNGLF 235 Query: 241 FDSVEY 246 SV+Y Sbjct: 236 LSSVKY 241 >gi|291457231|ref|ZP_06596621.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] gi|291381066|gb|EFE88584.1| tRNA pseudouridine synthase A [Bifidobacterium breve DSM 20213] Length = 303 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 97/285 (34%), Gaps = 40/285 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 M R + + Y+G G++GW +Q ++QG+IE A+ V E + + AGRTD+ Sbjct: 1 MTRLRIDLAYDGGGFYGWAKQPELRTVQGTIEDALHKVLRVPVGDEREPLRLTVAGRTDT 60 Query: 54 GVHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFH 102 GVHA QVAH D+ E + + L A L I + ++ Sbjct: 61 GVHASHQVAHLDVSDETLARCQGHMDVPLTEALARRLKAVLPADIVIHGIAIAPQGFDAR 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH--------- 153 Y + + L + AA + Sbjct: 121 FSALERTYVYRVADRSSEVDPRLRGCVLRVDESLDLDAMNAAAAMTIGLHDFGSFATPNP 180 Query: 154 -----------DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + L+ +VA +F +RS V Sbjct: 181 GGTTIREVKTAYWRRVPVASLVPDVLAENEAYRTPSLESGLVVFTIVADAFARNMVRSLV 240 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRK-ECGPLAPPEGLYFDSVEY 246 GS VG G+ T + R+ GP+AP +GL + +EY Sbjct: 241 GSSIKVGSGRKTLEWFADKMANPVREGSSGPIAP-QGLTLEHIEY 284 >gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis str. Marburg] Length = 273 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M + + + Y G+ Y G+QRQ + +++G + A+ + AGRTD GVH Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLDALKEAGVIRSPGDSRFQIAGRTDRGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL F E + L I +L + V F R+ R Sbjct: 61 ALGNFVSFFTEEEIHVNQINDLL------PHDIKVLAWASVMYPFKVRYPLERHYR---- 110 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +S+D + M AA+H G HDF+ F + +PIR I+ Sbjct: 111 ------------YILHRGESMDIDAMAKAAEHFRGTHDFSNF--SRRRDRNPIRKINDVR 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V+ N I + V SFL +R V L LV +G+ + D+ + L +R P APP Sbjct: 157 VSEDDNSILVDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTDERVFIDP-APP 215 Query: 237 EGLYFDSVEY 246 E L ++Y Sbjct: 216 ENLILMDLKY 225 >gi|283954398|ref|ZP_06371918.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] gi|283794015|gb|EFC32764.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 414] Length = 240 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q + +A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKSVQDVLGEALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + L L I I + +S YR I A Sbjct: 60 ASVEC---GEYFTNLEYLKKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHA 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLSFFVGKKDLKFFCKSGGDNKTTLREIFLARAYTYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFRFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNRFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRIHY 240 >gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303] Length = 277 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 113/249 (45%), Gaps = 25/249 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 R + + Y G+ Y G Q Q +I+G + K++ + + +GRTD+GVH+ Sbjct: 3 KRMALKLAYIGTEYHGSQVQPELPTIEGELFKSLKNLEIIDDPKSANFVSSGRTDTGVHS 62 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L QV FD + + + +N+ L ++I ++V +F+ R A R YLY + Sbjct: 63 LGQVVTFDTDNPR--LAVPRVINSQL--PESIWAWAYAVVPDEFNPRHGAFSRRYLYIMS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D +R A+++L+G HDF F + S +RT+ ++ Sbjct: 119 ----------------GEEYDISRIRTASKYLIGTHDFANFC-TPVKGKSTVRTVQRINI 161 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G L I + A SFL +R V +L +VG G + LE+ L + +E AP Sbjct: 162 RVKGTLTLIDIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLNPEYYEEGIEPAPSY 221 Query: 238 GLYFDSVEY 246 GL V+Y Sbjct: 222 GLILKDVDY 230 >gi|153951132|ref|YP_001398256.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] gi|166228691|sp|A7H426|TRUA_CAMJD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|152938578|gb|ABS43319.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. doylei 269.97] Length = 241 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 92/246 (37%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q + +A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDVLSEALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + + L L I I + +S YR I Sbjct: 60 VASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSH 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + D VG+ D F + +R I ++ Sbjct: 117 SSYSPFMASYVYFYPKFDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKKQCNH-FLAPPNGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LSRICY 241 >gi|218135248|ref|ZP_03464052.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] gi|217990633|gb|EEC56644.1| hypothetical protein BACPEC_03153 [Bacteroides pectinophilus ATCC 43243] Length = 196 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 2/176 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R +I+ Y+G+ Y GWQ Q N +I+G + A+ + GE + V GA RTD+GVHAL Sbjct: 1 MRRIKLIVAYDGTKYSGWQVQNNADTIEGRLNAALSSICGENIRVIGASRTDAGVHALGN 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +A FD ALNA L + I + V +H R + ++Y Y I+ R Sbjct: 61 IAVFDTESRIPAEKFAYALNARL--PEDIVVQKSCEVPPDYHPRHCSTIKTYEYHILNRT 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L + + +LD E M AAQ+L+G HDF +F S++ QA + +RTI + Sbjct: 119 FRLPQMRNNTFFCHYALDLETMNEAAQYLLGEHDFKSFCSVNTQAETTVRTIYSIE 174 >gi|87124988|ref|ZP_01080835.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] gi|86167308|gb|EAQ68568.1| tRNA pseudouridine synthase A [Synechococcus sp. RS9917] Length = 274 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 108/241 (44%), Gaps = 4/241 (1%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDL 66 ++Y GS + GWQRQ+ G+S+QG +EKAI + V AGRTD+GVHA QV HFD Sbjct: 1 MQYEGSSFCGWQRQRQGTSVQGELEKAIAALDPHRPVQAVAAGRTDAGVHAAGQVVHFDC 60 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 ALN L TI + +HA SA R Y Y I + P Sbjct: 61 CGPIPAQRWAPALNGRL--PGTIRVREAVERPLHWHACHSASYRRYRYTIYNGRRPNLFL 118 Query: 127 -KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 LD + MR L+G HDF+ F + + T+ + G+++ Sbjct: 119 APWSWHRYHCRLDEDAMRRGLDGLIGSHDFSAFMRAGSRRAHARTTVQDVSLERQGDVLI 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + + A FL+ +R G L VG+ + E+ + + R+E APP+GL Sbjct: 179 LEIQASGFLYGMVRLLTGQLVAVGEHRLHPQAFEQRWRQRRRQEVKEAAPPQGLCLLRAG 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gi|317418864|emb|CBN80902.1| tRNA pseudouridine synthase-like 1 [Dicentrarchus labrax] Length = 285 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 85/275 (30%), Positives = 119/275 (43%), Gaps = 33/275 (12%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q +Q +E AI + V + + RTD GVHA Sbjct: 6 RYLIFFQYIGTKYSGVVKVPPHQLPSKGVQDHLEDAIRKLMPLNPVSLSVSSRTDRGVHA 65 Query: 58 LRQVAHFDLVREWVPVIL-----CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 L AHFDL R+ +ALN YLK I N V FHAR+ A R+Y Sbjct: 66 LSNSAHFDLQRKNNLPPFTEGILIEALNFYLKTEQI-RITNAHRVPDDFHARYQAQSRTY 124 Query: 113 LYRIITRQAPLALEK-----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 +YRI L L LD MR AA LVG HDF++FR++ + + Sbjct: 125 VYRIALGIPNQLLLPLTELKFCWSLRNTELDVGAMRKAAALLVGNHDFSSFRAVSTEMAF 184 Query: 168 PIR-------------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + E+ ARSFL+ Q+R G+L VG G+ + Sbjct: 185 KNPVKVLDVASIQPGGSFVQSHFQREVLFWEVTFKARSFLYKQVRRMTGALVAVGQGRLS 244 Query: 215 STDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 L++ L+A+D P +AP GL+ V+Y Sbjct: 245 VPQLKEILEARD-TMAYPKNLVAPAHGLFLTRVDY 278 >gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c] gi|254789642|sp|B8GFU5|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c] Length = 280 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 98/248 (39%), Gaps = 28/248 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R + Y+G+ + G Q Q +++G + A V AGRTD GVHA Sbjct: 1 MRLAFQLSYDGNQFRGSQLQPAYRTVEGELITACQRVQLFDDPCKAGFALAGRTDRGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F +ALN L S + + V FH RF AI R+Y Y Sbjct: 61 RGQVGAFSTPFP---ERAVEALNGQL--SPDLWCNGFAEVPPSFHPRFDAISRTYRYFFA 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 LD M AA L+G HDF R + SPIRT+ V Sbjct: 116 D----------------WPLDIRAMDQAAAALIGTHDF--SRLARVREKSPIRTVKSARV 157 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + V A ++L +R +L L+G + +E+ L + R+ P AP + Sbjct: 158 FQDRGIPVFEVTAHTYLWHMVRCMAAALLLIGTHEREPELMERLLSGKCRRN-PPAAPAD 216 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 217 GLVLWDVD 224 >gi|86153529|ref|ZP_01071733.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843255|gb|EAQ60466.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni HB93-13] Length = 241 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + + L L I I + +S YR I Sbjct: 60 VASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSH 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + D + VG+ D F + +R I ++ Sbjct: 117 SSYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LSRICY 241 >gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [uncultured methanogenic archaeon RC-I] gi|121687867|sp|Q0W2P8|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [uncultured methanogenic archaeon RC-I] Length = 266 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 96/247 (38%), Gaps = 24/247 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSGVHALR 59 ++ + I Y G+ ++G Q Q +++ + KA+ + AGRTD+GVHAL Sbjct: 1 MKTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAIKLGTKIAMAGRTDAGVHALG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV F + + + +N+ L + + V F R A R Y Y + Sbjct: 61 QVVAF--EQADPKLTAPRIINSKL--PKDLWAYARAEVPDDFDPRRHATSREYRYILYAP 116 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 K + + D N P+RT+ D+ Sbjct: 117 DVIERRLKECSSRFLGTHDFTNFSSV-----------------EAGKYPVRTVTRLDIAK 159 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+ I + A SFL +R V +L+LVG+ K +EK + R+ P AP GL Sbjct: 160 RGDFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEYREGIPPAAPG-GL 218 Query: 240 YFDSVEY 246 Y V Y Sbjct: 219 YLSRVNY 225 >gi|315636694|ref|ZP_07891924.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] gi|315479009|gb|EFU69712.1| tRNA pseudouridine synthase A [Arcobacter butzleri JV22] Length = 240 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++ Y+GS + G Q+Q NG +++ + KA + + +GRTD VH+ QV Sbjct: 1 MNLKFVVAYDGSLFQGSQKQPNGKTVENELLKAFENI-NIKTQIVLSGRTDKEVHSSGQV 59 Query: 62 AHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + W K LN L S I ++ FH+RFSA +R Y Y I T++ Sbjct: 60 FNCQIPSYWEDFFKLKEILNKNLPTSIKIKKISKVEES--FHSRFSAKKRVYRYLITTKE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + KS+D + ++ A + +G HDF F + R I + Sbjct: 118 TTPFND--KFITYVKSVDEKLLKKAIKEFIGVHDFKYFHKTGSDKENTNREIFDTKFYKY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + A S+L +QIR VG L + D K T DL+K L ++ P GLY Sbjct: 176 KDIYVFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLKKQLN-CEKSIFKTPIKPNGLY 234 Query: 241 FDSVEY 246 ++Y Sbjct: 235 LAKIKY 240 >gi|317125837|ref|YP_004099949.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] gi|315589925|gb|ADU49222.1| tRNA pseudouridine synthase A [Intrasporangium calvum DSM 43043] Length = 303 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 12/257 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALR 59 +R + + Y G+ + GW Q +++G + A+ V V + AGRTD+GVHA Sbjct: 20 VRLRLDLAYEGTAFSGWAAQPGLRTVEGELATAVTTVLRAPAPVSLTVAGRTDAGVHARG 79 Query: 60 QVAHFDLVREWVPVILCKALN---------AYLKISDTISILNLSIVDKQFHARFSAIRR 110 QV H D+ + + ++ + + + ++ + F ARFSA R Sbjct: 80 QVVHVDVEPAALAALPGRSNRTPEEALLRRLGGLLDPDVVVHRVARAPEGFDARFSAQER 139 Query: 111 SYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 YLYR+ A L + P+ LD E M AA+ LVG DF F A++ Sbjct: 140 RYLYRLADADALRDPLRRHDTVWWPRPLDAERMDEAARPLVGLRDFAAFCKRREGATTVR 199 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +++ V ++ V A +F H+ +RS VG+ VG+G+ ++ + Q R Sbjct: 200 TLLEYRWVRLGDGVLAATVRADAFCHSMVRSLVGAAVAVGEGRRPTSWPAELQQRTQRAA 259 Query: 230 CGPLAPPEGLYFDSVEY 246 + P GL ++V Y Sbjct: 260 DVRVMPAHGLSLEAVTY 276 >gi|289805625|ref|ZP_06536254.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 2/209 (0%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 + E + V AGRTD+GVH QV HF+ +NA L I++ + V Sbjct: 1 MANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTV 58 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 FHARFSA R Y Y I + A+ + LD E M AAQ L+G +DFT+ Sbjct: 59 PDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTS 118 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 FR++ CQ+ +P R + H +V G + + + A +F+H +R+ VGSL VG + Sbjct: 119 FRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESW 178 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L A+DR A EGLY +V+Y Sbjct: 179 IAELLAARDRTLAAATAKAEGLYLVAVDY 207 >gi|212716584|ref|ZP_03324712.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] gi|212660288|gb|EEB20863.1| hypothetical protein BIFCAT_01513 [Bifidobacterium catenulatum DSM 16992] Length = 306 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTDFYGWAKQPDMRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + V AL L+ + I+I ++ + F ARF Sbjct: 65 VHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRMLPNDIAIHSIKEAPEGFDARF 124 Query: 106 SAIRRSYLYRIITRQAPLALEKG----RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 SA+ R+Y+YRI R + + L F T Sbjct: 125 SALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIAVMNKAAEMTIGLHDFGSFATPNPG 184 Query: 162 HCQASSPIRTIDHFDVNSF------------------GNLIEIRVVARSFLHTQIRSFVG 203 L+ +VA +F +RS V Sbjct: 185 GTTIREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVRSLVN 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK + + R+ GP+AP +GL + +EY Sbjct: 245 GCVQVGIGKRSLDWFAGKMATPLREGSTGPIAP-QGLTLEHIEY 287 >gi|157738399|ref|YP_001491083.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] gi|157700253|gb|ABV68413.1| tRNA pseudouridine synthase A [Arcobacter butzleri RM4018] Length = 240 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + ++ Y+GS + G Q+Q NG +++ + KA + + +GRTD VH+ QV Sbjct: 1 MNLKFVVAYDGSLFQGSQKQPNGKTVENELLKAFENI-NIKTQIVLSGRTDKEVHSSGQV 59 Query: 62 AHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + + W K LN L +I I +S VD+ FH+RFSA +R Y Y I T++ Sbjct: 60 FNCQIPSYWEDFFKLKEILNKNL--PTSIKIKKISKVDESFHSRFSAKKRVYRYLITTKE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + KS+D + ++ A + +G HDF F + R I + Sbjct: 118 TTPFND--KFITYVKSVDEKLLKKAIKEFIGIHDFKYFHKTGSDKENTNREIFDTKFYKY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + A S+L +QIR VG L + D K T DL K L + P+ P GLY Sbjct: 176 KDIYVFKFTANSYLRSQIRLMVGFLLAINDKKLTIEDLRKQLNCEKIIFKTPI-KPNGLY 234 Query: 241 FDSVEY 246 ++Y Sbjct: 235 LAKIKY 240 >gi|121613330|ref|YP_001000512.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] gi|166228692|sp|A1VZH1|TRUA_CAMJJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|121504241|gb|EAQ72335.2| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 241 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + L L I I + +S YR I Sbjct: 60 VASVGC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSH 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + D + VG+ D F + +R I ++ Sbjct: 117 SSYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LSRICY 241 >gi|13358100|ref|NP_078374.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761947|ref|YP_001752621.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508635|ref|ZP_02958135.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|26006901|sp|Q9PPV4|TRUA_UREPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|189030149|sp|B1AJH7|TRUA_UREP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|11269468|pir||B82879 pseudouridylate synthase I UU536 [imported] - Ureaplasma urealyticum gi|6899540|gb|AAF30949.1|AE002152_8 pseudouridylate synthase I [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827524|gb|ACA32786.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182676096|gb|EDT88001.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 241 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+GS ++GW RQ ++QG +E+ + + + G+GRTD GVHA Q Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQ 60 Query: 61 VAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y +I Sbjct: 61 TFSVKHSALKYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQY-VIND 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + + A + VG HDF +F + + ++ Sbjct: 118 YEFDLFRNNYELFVNQKINDQKILEALELFVGEHDFKSFSTSELTMTIR---RINWVKIK 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + A FL +R V S K + + + L + LAP GL Sbjct: 175 RDTHLIIYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAPACGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|282890286|ref|ZP_06298816.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499943|gb|EFB42232.1| hypothetical protein pah_c014o179 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 231 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 106/222 (47%), Gaps = 4/222 (1%) Query: 27 IQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 IQ +EK I + + V V +GRTD+GVHA QVAHF E ++N L Sbjct: 3 IQEIVEKEIGKIVRQPVRVVASGRTDAGVHARGQVAHFSTNAEIDLRRFLVSINGLL--P 60 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 I + ++ V FHA++S ++Y Y + + + AW I + LD +++AA Sbjct: 61 KDIRVKDICQVPPDFHAQYSVSGKAYHYHLTLSRVQSPFSRFYAWHIRQKLDLSQLQVAA 120 Query: 147 QHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 Q VG HDFT+F + + +RTI DV + FL+ +R+ VG Sbjct: 121 QLFVGTHDFTSFANEAHREHPQNAVRTIKRVDVIMEDEGCRLEFEGDGFLYKMVRNMVGI 180 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L V G TD+ A+DRK+ G APP GL+ V + Sbjct: 181 LIEVATGYRPITDIPAIFAAKDRKKAGKAAPPHGLFLHQVNF 222 >gi|171920798|ref|ZP_02931982.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179091|ref|ZP_02964822.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024013|ref|ZP_02996773.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518366|ref|ZP_03003873.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524280|ref|ZP_03004323.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867909|ref|ZP_03079907.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273508|ref|ZP_03206044.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554225|ref|YP_002284984.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550684|ref|ZP_03771633.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551354|ref|ZP_03772300.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|238057738|sp|B5ZC44|TRUA_UREU1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|171903560|gb|EDT49849.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184208984|gb|EDU06027.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019040|gb|EDU57080.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998036|gb|EDU67133.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659898|gb|EDX53278.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660386|gb|EDX53645.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250028|gb|EDY74808.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541726|gb|ACI59955.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379169|gb|EEH01534.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379838|gb|EEH02200.1| tRNA pseudouridine synthase A [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 241 Score = 128 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + I Y+GS ++GW +Q ++Q +E + + + G+GRTD GVHA Q Sbjct: 1 MNYKISIRYDGSLFYGWAKQPQKRTVQEHLETVFKTIFKINDIKIIGSGRTDRGVHAYEQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI-ITR 119 V + + L + L + S Y+ I Sbjct: 61 VFSV---NHHQLNYEPQVIYQALCSQIDPDVQILKVQSVHDTFHAQHDAISKTYQYIIND 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + I + ++ + + A + VG +DF +F + ++ ++ + Sbjct: 118 YEFDLFKHNYEYFIHQKINDQKLLEALELFVGEYDFKSFSTSELPLTTR---KINWVKIT 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +EI + FL +R + + K + T ++ L + LAPP GL Sbjct: 175 RNTRLEIYINGNGFLKNMVRMIISACIDYVFNKISLTQIKTLLTNPKKGASVKLAPPCGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091] gi|121725515|sp|Q2NHB4|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091] Length = 274 Score = 128 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 26/252 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVH 56 M R + I Y GS + G+QRQ N +++G + + AGRTD GVH Sbjct: 1 MRRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNIIEDTWTAHYSVAGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + V F + LN L D I I+ + V F RF Sbjct: 61 STGNVISFITDEDIHINQ----LNGLL--PDDIKIIGEARVPYGFKVRFP---------- 104 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + K+LD M +A + +G+H+F F +P R I + Sbjct: 105 --LTRTYTYIQPISPFEKKNLDITKMHVAMESFIGKHNFRNF--SKRNEKNPNRKIIDVN 160 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG--PLA 234 + +++ +V SFL +R V S+ VG GK D+ + L+ ++ ++ A Sbjct: 161 LEVDEDVLIFTIVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPKELRQFIRLQPA 220 Query: 235 PPEGLYFDSVEY 246 P GL +EY Sbjct: 221 PANGLILSDMEY 232 >gi|171920141|ref|ZP_02931545.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701850|ref|ZP_02971512.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902508|gb|EDT48797.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701145|gb|EDU19427.1| tRNA pseudouridine synthase A [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 241 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 8/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQ 60 + Y + + Y+GS ++GW RQ ++QG +E+ + + + G+GRTD GVHA Q Sbjct: 1 MNYKISLRYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQ 60 Query: 61 VAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + ++ I+ +AL + + S I IL + VD FHA+++A ++Y Y +I Sbjct: 61 IFSVKHSALKYDSHIIYQALCS--RTSSDIQILEVQKVDDSFHAQYNATSKTYQY-VIND 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ + + A + VG HDF +F + + ++ Sbjct: 118 YEFDLFRNNYELFVNQKINDQKILEALELFVGEHDFKSFSTSELTMTIR---RINWVKIK 174 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + I + A FL +R V S K + + + L + LAP GL Sbjct: 175 RDTRLIIYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAPACGL 234 Query: 240 YFDSVEY 246 Y V Y Sbjct: 235 YLYKVYY 241 >gi|86150269|ref|ZP_01068496.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597547|ref|ZP_01100781.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|148926529|ref|ZP_01810211.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] gi|218562455|ref|YP_002344234.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|24212598|sp|Q9PP96|TRUA_CAMJE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|85839385|gb|EAQ56647.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190139|gb|EAQ94114.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 84-25] gi|112360161|emb|CAL34955.1| tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845223|gb|EDK22317.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni CG8486] Length = 241 Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 91/246 (36%), Gaps = 5/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA Sbjct: 1 MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYA 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA + + L L I I + +S YR I Sbjct: 60 VASVEC---GDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSH 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + D VG+ D F + +R I ++ Sbjct: 117 ASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAY 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 KDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLY 235 Query: 241 FDSVEY 246 + Y Sbjct: 236 LSRICY 241 >gi|34557089|ref|NP_906904.1| tRNA pseudouridine synthase A [Wolinella succinogenes DSM 1740] gi|34482804|emb|CAE09804.1| TRNA PSEUDOURIDINE SYNTHASE [Wolinella succinogenes] Length = 267 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +EY+GS +FG Q QK S+ ++++ + + G V +GRTD GVHA RQ Sbjct: 15 MPTLLAFLEYDGSAFFGSQIQKEEPSVALALQRGLKSM-GIASKVRFSGRTDRGVHATRQ 73 Query: 61 VAHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F++ + K LN L + L + YL Sbjct: 74 AVSFEVPYKKSDWGYFKEELNKKLFPYLRVRRLYPIREGLDPRFEAKSRAYRYLLSEEPL 133 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A + R D ++ A + LVG HDF F+ Q S +R + + Sbjct: 134 SAFAS----RYVTHAHLGDERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYR 189 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GL Sbjct: 190 YRSYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFCEG-APPYGL 248 Query: 240 YFDSVEY 246 Y V + Sbjct: 249 YLCKVSF 255 >gi|86157969|ref|YP_464754.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] gi|85774480|gb|ABC81317.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-C] Length = 272 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 16/258 (6%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L + LN L + I +L+ + V FHAR SA R+Y+Y + Sbjct: 60 AQVVSFSARAALDPAALRRGLNEGL--PEGILVLDAARVGPSFHARGSAASRTYVYLVGA 117 Query: 119 R------QAPLALEKGRAWLIPKSLDCENMRIAAQHL----VGRHDFTTFRSIHCQASSP 168 L RA+ + + + L R + + Sbjct: 118 PPPEGLRPYAWTLPDARAFPELAEVPPLDAAAMREALGAAVGEHDFVGFARPGEQRGTVR 177 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + L+ + + + FL +R+ VG+ VG G+ + L + R Sbjct: 178 TLLRAEVVEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAVGLGRAPPDVIRTLLATRGR- 236 Query: 229 ECGPLAPPEGLYFDSVEY 246 G AP GL +V Y Sbjct: 237 YRGVRAPGWGLTLAAVRY 254 >gi|332669550|ref|YP_004452558.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] gi|332338588|gb|AEE45171.1| tRNA pseudouridine synthase A [Cellulomonas fimi ATCC 484] Length = 316 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 82/266 (30%), Positives = 119/266 (44%), Gaps = 22/266 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----GEI-VVVHGAGRTDSGV 55 +R + + Y+G+ + GW RQ ++QG +E A+ V GE V AGRTD+GV Sbjct: 17 VRLRLDLAYDGTSFSGWARQPALRTVQGVLEDALATVLRTAAHGEPAPHVTVAGRTDAGV 76 Query: 56 HALRQVAHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARFS 106 HA QVAH D+ AL A L + + +++ F ARFS Sbjct: 77 HARGQVAHMDVAPHVLDAVRGRSDRTPTDALVARLAGVLPADVVVHRVAVAPLGFDARFS 136 Query: 107 AIRRSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+RR Y YRI A L + + LD M AA+ LVGRHDF + A Sbjct: 137 ALRRRYAYRICDDSGARDPLSRAHVLWHRRPLDVAAMDAAARTLVGRHDFAAYCKPREGA 196 Query: 166 SSPIRTIDHFDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 ++ IRT++ F L+ RV A +F H+ +R+ VG+ VG+G+ + Sbjct: 197 TT-IRTLEEFVWERASGGAEAGLVVARVQADAFCHSMVRALVGASVAVGEGRRPVAWPAQ 255 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 L R + GL + V Y Sbjct: 256 LLAGGRRDAAAHVVAAHGLTLEEVGY 281 >gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7] Length = 284 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 88/250 (35%), Gaps = 19/250 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVH 56 R + I Y G+ Y G+Q Q +I+G + KA+ + AGRTD+GVH Sbjct: 9 RIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYSAAGRTDTGVH 68 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QV F + + +N+ L R + R Y Sbjct: 69 ALAQVVSFVTSNQ---NTTPRMINSVLPDGSIWVSAIAKPYSGFNARRDAISREYRYYLF 125 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + L + + R + + S IR I + Sbjct: 126 LQTELDLDITRMREASELFVGTHDFSNFSLLQGNEYEVAGY---------STIRDIKRIE 176 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V + + I + A FL +R V +L++VG G +E L + KE AP Sbjct: 177 VKTKKPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIEDLLDLRI-KEGIEPAPA 235 Query: 237 EGLYFDSVEY 246 GL +V Y Sbjct: 236 FGLVLKNVSY 245 >gi|255994429|ref|ZP_05427564.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] gi|255993142|gb|EEU03231.1| tRNA pseudouridine synthase A [Eubacterium saphenum ATCC 49989] Length = 304 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 108/287 (37%), Gaps = 44/287 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M I Y+GS + G+Q+ +S+QG IE A+ + G V + RTD+GVHA Q Sbjct: 1 MKHIAFKISYDGSAFKGFQKNHGITSVQGEIENALKPIVG-DVEISAVSRTDAGVHAFSQ 59 Query: 61 VAHFDLVREWVPVILCKAL-NAYLKISDTISILN------LSIVDKQFHARFSAIRRSYL 113 + F L + L NA+ + + + + R+ + Y+ Sbjct: 60 IFSFSYDTNIPHGRLAEVLTNAFSTRKSDYRKQAAIAIEGWAELGRAMNPRYFVKGKRYI 119 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----- 168 Y + L L+ M+ A+ VG HDF+ FR+ ++ Sbjct: 120 YVFKKNAGSDIFARNYMLLTNGDLNVGRMKEEAKAFVGEHDFSAFRTQDGRSPIRKVFSA 179 Query: 169 ------------------------------IRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 R + ++++ + V FL+ + Sbjct: 180 NVISCEELNDGFHEPLTDEYGRISDIIALKKRLLPRLNLSNLQGYVFFAVTGEGFLYNMV 239 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 R G+L VG K+ + L++++R+ G APP+GLY D V Sbjct: 240 RIMAGTLLEVGKNKFD-KPVCDVLKSKNRQMAGITAPPQGLYLDEVF 285 >gi|268679755|ref|YP_003304186.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] gi|268617786|gb|ACZ12151.1| tRNA pseudouridine synthase A [Sulfurospirillum deleyianum DSM 6946] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 8/249 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 +R +I+ Y+GS ++G+QRQ N + ++ G +EK++ G + G+GRTD GVHA Sbjct: 1 MRVKLILSYDGSHFYGFQRQNNENEHFQTVTGILEKSL-KALGIHTPIVGSGRTDRGVHA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 LRQV H DL + L + L S + I + + LYR Sbjct: 60 LRQVVHLDLP--LFWEKEYEKLRSLLNRSLMPHLYIQQIHPTLPNFHARFSAQKRLYRYF 117 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 L +LD + + AQ G H+F F+ + R + Sbjct: 118 LYDGVYQPFYAHYALHVNALDVQRLHHVAQSFQGAHNFEFFKKQGGGLTRDERILYKVGA 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +LI I + +FL +QIR +L V + +L L+ +++K L PP Sbjct: 178 YRYKHLIVIYFLGDAFLRSQIRMMCDALLKVCYDEIREEELIAQLR-REKKVSTTLLPPS 236 Query: 238 GLYFDSVEY 246 GLY + Y Sbjct: 237 GLYLSRIFY 245 >gi|57167827|ref|ZP_00366967.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] gi|57020949|gb|EAL57613.1| tRNA pseudouridine synthase A [Campylobacter coli RM2228] Length = 240 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 94/245 (38%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA V Sbjct: 1 MKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + L + I ++ + +S YR I Sbjct: 60 ACVEC---GEHFRDLNYLKKQINKFSHPFIHVKNLKIMPSNFEVRYDVKSREYRYIFYHG 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +D + Q+ VG DF F + IR I S+ Sbjct: 117 VYNPFLASYVHFYPFIDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R A FL QIR V S+ V + K + +L++ ++A+ + LAPP GLY Sbjct: 177 DFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEAKK-QYNHFLAPPCGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRISY 240 >gi|283782782|ref|YP_003373536.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] gi|283442111|gb|ADB14577.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 409-05] Length = 305 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 113/284 (39%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGEIEGALHTVLRVPEGDSAEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL LK IS+ +S+ F ARF Sbjct: 61 VHASHQVCHLDVCEETLLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ------------------ 147 SA+ R+Y+YRI + + K D ++ Q Sbjct: 121 SALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFARPN 180 Query: 148 ----HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + R ++ L+E +VA +F H +RS V Sbjct: 181 PGGTTIRDVKSACWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRSLVQ 240 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 + +G GK T + + R+ GP+AP +GL + V Y Sbjct: 241 ACVQIGCGKRTLDWFVEKINTPLREGSTGPIAP-QGLTLEYVAY 283 >gi|153807552|ref|ZP_01960220.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] gi|149129914|gb|EDM21126.1| hypothetical protein BACCAC_01832 [Bacteroides caccae ATCC 43185] Length = 220 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 7/217 (3%) Query: 33 KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 KA+ + V GAGRTD+GVHA VAHFD V + + LN L IS+ Sbjct: 2 KALSTFLRCEIEVVGAGRTDAGVHASLMVAHFDYDGLLDTVSVAEKLNRLL--PPDISVY 59 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + V + HARF A R+Y Y + + W I SLD E M AA+ L Sbjct: 60 RVCRVKPEAHARFDATARTYKYYV--TAVKYPFNRQYRWRIYSSLDYERMNEAARTLFEY 117 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNL---IEIRVVARSFLHTQIRSFVGSLKLVG 209 DFT+F +H + I I H + + + A FL +R+ VG+L VG Sbjct: 118 SDFTSFSKLHTDVKTNICHITHAEWTKVTDDEATWVFTIRADRFLRNMVRAIVGTLIEVG 177 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 GK + D + ++ QDR + G AP + L+ +VEY Sbjct: 178 RGKLSVEDFRRIIEQQDRCKAGTSAPGQALFLVNVEY 214 >gi|307721208|ref|YP_003892348.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] gi|306979301|gb|ADN09336.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294] Length = 236 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 110/247 (44%), Gaps = 13/247 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R + + YNG+ +FG Q QK ++ G +E + + G V +GRTD GVHA Q Sbjct: 1 MRVALHLAYNGTHFFGSQTQKETSKTVLGELENVLKKL-GIEQKVIASGRTDKGVHATMQ 59 Query: 61 VAHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V H DL W K LN L + + + V FHAR+SA +R+Y Y I T Sbjct: 60 VCHIDLPPYWEDTQKLKRVLNEMLND--ALHVKRIRPVSDDFHARYSAKKRTYRYIIKTT 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 Q+ + K ++ EN++ VG+HDF F + S R I Sbjct: 118 QSNPF--EKDFVTFLKDINFENIQENIALFVGKHDFKQFMKTGSEVKSTTRIIYKAFAYK 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + + + A FL +QIR VG+L + +++ L + AP GL Sbjct: 176 YKDYVVLNFQANGFLRSQIRLMVGALLS-----LNAQQIQEQLNCSN-NYKIKPAPANGL 229 Query: 240 YFDSVEY 246 Y ++ Y Sbjct: 230 YLSTITY 236 >gi|42559739|sp|Q7M9U3|TRUA_WOLSU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 253 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 7/247 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M +EY+GS +FG Q QK S+ ++++ + + G V +GRTD GVHA RQ Sbjct: 1 MPTLLAFLEYDGSAFFGSQIQKEEPSVALALQRGLKSM-GIASKVRFSGRTDRGVHATRQ 59 Query: 61 VAHFDLVREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 F++ + K LN L + L + YL Sbjct: 60 AVSFEVPYKKSDWGYFKEELNKKLFPYLRVRRLYPIREGLDPRFEAKSRAYRYLLSEEPL 119 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 A + R D ++ A + LVG HDF F+ Q S +R + + Sbjct: 120 SAFAS----RYVTHAHLGDERKIQEAMKLLVGWHDFALFKKSGSQEKSTLREMRRCWLYR 175 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + + A FL QIR VG+L VG G+ + + ++ L+A+ R C APP GL Sbjct: 176 YRSYWVFYFEANGFLRLQIRLLVGALLKVGRGEMSLEEFKEQLEAKRRFFCEG-APPYGL 234 Query: 240 YFDSVEY 246 Y V + Sbjct: 235 YLCKVSF 241 >gi|225351017|ref|ZP_03742040.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158473|gb|EEG71715.1| hypothetical protein BIFPSEUDO_02599 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 331 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 107/284 (37%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G+ ++GW +Q + ++QG IE+ + + E + + AGRTD+G Sbjct: 30 VRLRIDLAYDGTDFYGWAKQPDIRTVQGEIERVLHTILRVPEGDDNEPLRLTVAGRTDTG 89 Query: 55 VHALRQVAHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + V AL L+ + I+I ++ + F ARF Sbjct: 90 VHASHQVCHLDINEETLARCVGHMQVEPVMALTRRLQRMLPNDIAIRSIKEAPEGFDARF 149 Query: 106 SAIRRSYLYRIITRQAPLALEKG----RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 SA+ R+Y+YRI R + + L F T Sbjct: 150 SALERTYVYRIADRSSEIDPRTRNSVLHIDDNLDIGAMNKAAEMTIGLHDFGSFATPNPG 209 Query: 162 HCQASSPIRTIDHFDVNSF------------------GNLIEIRVVARSFLHTQIRSFVG 203 L+ +VA +F +RS V Sbjct: 210 GTTIREVKTAYWRRIPQHPLIDDGTTMGERYRTPALESGLLCFTIVADAFARNMVRSLVN 269 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK + + R+ GP+AP +GL + +EY Sbjct: 270 GCVQVGIGKRSLDWFAGKMATPLREGSTGPIAP-QGLTLEHIEY 312 >gi|309802980|ref|ZP_07697081.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] gi|308220447|gb|EFO76758.1| tRNA pseudouridine synthase A [Bifidobacterium dentium JCVIHMP022] Length = 302 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 114/284 (40%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + AL L+ + I+I ++ + F ARF Sbjct: 61 VHASHQVCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKG-RAWLIPKSLDCENMRIAAQHLV-------------- 150 SA+ R+Y+YRI R + + + LD E M AA + Sbjct: 121 SALERTYVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPG 180 Query: 151 -------GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + + + L +VA +F +RS V Sbjct: 181 GTTIREVKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRSLVN 240 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK + + R+ GP+AP +GL + +EY Sbjct: 241 GCVQVGIGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEY 283 >gi|154486775|ref|ZP_02028182.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] gi|154084638|gb|EDN83683.1| hypothetical protein BIFADO_00600 [Bifidobacterium adolescentis L2-32] Length = 306 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + + AL L+ I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPNGFDARF 124 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV--------------- 150 SA+ R+Y+YRI R + + L A + Sbjct: 125 SALERTYVYRIADRSSEVDPRTRNFVLHIDDELDLKAMNEAAAMTIGLHDFGSFATPNPG 184 Query: 151 -------GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + + L+ +VA +F +RS V Sbjct: 185 GTTIREVKTAYWRRVPQRTLIDDGMTMGERYRTPTVESGLVCFVIVADAFARNMVRSLVN 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK + + A R+ GP+AP +GL + +EY Sbjct: 245 GCVQVGIGKRSLDWFAGKMAAPLREGSTGPIAP-QGLTLEHIEY 287 >gi|295133853|ref|YP_003584529.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] gi|294981868|gb|ADF52333.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87] Length = 262 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 15/261 (5%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGV 55 M R Y + ++Y G GWQ+Q N +++G I K + V E V G RTD+ V Sbjct: 1 MQRVRYYYLIKVQYLGYRLHGWQKQPNFKTVEGLITKTLRYVMPETRYKVLGCSRTDAMV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 + + + + + L + I + ++ V F+ + + Y Y Sbjct: 61 SSNGSAFELFVDEQPLENLEDFLALFNLNLPQDIRVTDIEEVGANFNIIQHSKIKEYAYL 120 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 LD + M+ AQ G H+F + + S+ R I Sbjct: 121 FSFGSKNHPFCAPFMANFQFDLDIDKMKKGAQLFNGTHNFRNYCVRVSEKSTFEREILKA 180 Query: 176 D---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + V + FL Q+R +G++ +G G+++ D+E++L+ + Sbjct: 181 EIVENKLYTANFFPKKSYIFHVHGKGFLRHQVRLMMGAMIQLGRGEFSLGDIEQSLKEGN 240 Query: 227 RKECG-PLAPPEGLYFDSVEY 246 AP GL + + + Sbjct: 241 EHLQMDYSAPASGLILNDIHF 261 >gi|119025367|ref|YP_909212.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] gi|118764951|dbj|BAF39130.1| tRNA pseudouridine synthase A [Bifidobacterium adolescentis ATCC 15703] Length = 306 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 40/284 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G+G++GW +Q ++QG IE+ + + E + + AGRTD+G Sbjct: 5 VRLRIDLAYDGTGFYGWAKQPEIRTVQGEIERVLHTILRVPEGDPTEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + V AL L+ I+I ++ F ARF Sbjct: 65 VHASHQVCHLDVNEDVLKRCVGHMDVPPVIALTRRLQRMLPADIAIRGIAPAPDGFDARF 124 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV--------------- 150 SA+ R+Y+YRI R + + L A + Sbjct: 125 SALERTYVYRIADRSSEVDPRTRNFVLHIDDELDLKSMNEAAAMTIGLHDFGSFATPNPG 184 Query: 151 -------GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + + L+ +VA +F +RS V Sbjct: 185 GTTIREVKTAYWRRVPQRTLIDDGMTMGERYRTPTVESGLVCFVIVADAFARNMVRSLVN 244 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK + + A R+ GP+AP +GL + +EY Sbjct: 245 GCVQVGIGKRSLDWFAGKMAAPLREGSTGPIAP-QGLTLEHIEY 287 >gi|332185222|ref|ZP_08386971.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] gi|332014946|gb|EGI57002.1| tRNA pseudouridine synthase A [Sphingomonas sp. S17] Length = 223 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 113/219 (51%), Positives = 142/219 (64%), Gaps = 1/219 (0%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q ++E AI VTGE VH AGRTD+GVH L AH D+ + P L +A+NA Sbjct: 2 QQALEDAIHAVTGERTAVHAAGRTDAGVHGLAMRAHVDIAKVIAPFRLMEAINAR-IRPA 60 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 +++L+ V +HARFS IRRSY YRI+ R+APL E G AW +P++LD M AA Sbjct: 61 PVAVLDCVEVASDWHARFSCIRRSYEYRIVNRRAPLTHELGLAWQVPQALDEAAMAEAAA 120 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 LVGRHDFTTFRS+HCQA SP+RT+D V G + IR ARSFLH Q+RS VG L L Sbjct: 121 RLVGRHDFTTFRSVHCQADSPVRTLDLLSVERDGARLFIRAAARSFLHHQVRSMVGCLAL 180 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG G+WT D+E AL A+DR + G AP +GL+F +Y Sbjct: 181 VGMGRWTPDDVEAALVARDRAQLGLNAPSDGLFFVRADY 219 >gi|219682884|ref|YP_002469267.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|254789603|sp|B8DW40|TRUA_BIFA0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|219620534|gb|ACL28691.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis AD011] gi|289178185|gb|ADC85431.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis BB-12] Length = 298 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 35/280 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI----VVVHGAGRTDSGVH 56 M R + + YNG+ + GW Q ++QG++E+A+ +T + + AGRTD+GVH Sbjct: 1 MTRLRIDLAYNGAAFHGWAAQPGCRTVQGTVEEALRRITRMPDAGSLRLTVAGRTDAGVH 60 Query: 57 ALRQVAHFDLVRE-------WVPVILCKALNAYL--KISDTISILNLSIVDKQFHARFSA 107 A QV H D+ + + + +AL L + D I+I +S+ F ARFSA Sbjct: 61 ATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHGISVAPAGFDARFSA 120 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLI--------------------PKSLDCENMRIAAQ 147 + R+Y+YRI + P Sbjct: 121 LERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGLHDFGSFAIANPGGT 180 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + R P + L+ +VA +F +RS VG+ Sbjct: 181 TIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESGLLCFTIVADAFARNMVRSLVGACVQ 240 Query: 208 VGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK ++ R+ GP+AP +GL + + Y Sbjct: 241 VGMGKRDVDWFAGKMRVPLREGSTGPIAP-QGLTLEHIAY 279 >gi|298709054|emb|CBJ31003.1| conserved unknown protein [Ectocarpus siliculosus] Length = 412 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 27/272 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 R+ + Y+G+ Y G+Q Q +G ++QG +EKA+ V V AGRTD+GVH++ Q Sbjct: 137 TRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQ 196 Query: 61 VAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 HFDL + ++ + + + S + + +A + Sbjct: 197 AVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKR 256 Query: 112 YLYRIITRQAPLALEKGRAWLIPK----SLDCENMRIAAQHLVGRHDFTTF--------- 158 Y YR+ L++ + ++ + + LVG+HDF F Sbjct: 257 YSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRAT 316 Query: 159 --RSIHCQASSPIRTIDHFDVNSFGNLIE-IRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + + +RT+ ++ G + L+ +R+ VG+L V G+ Sbjct: 317 LKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEP 376 Query: 216 TDLEKALQAQDR-KECGPLAPPEGLYFDSVEY 246 +++ + R AP GL D+V Y Sbjct: 377 EVIDEIFATRVRDSRLIYAAPAHGLTLDTVLY 408 >gi|197122727|ref|YP_002134678.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] gi|196172576|gb|ACG73549.1| tRNA pseudouridine synthase A [Anaeromyxobacter sp. K] Length = 272 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 16/258 (6%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GLRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L + LN L + I +L+ + V FHAR SAI R+Y+Y + Sbjct: 60 AQVVSFSARAALDPAALRRGLNEGL--PEGILVLDAARVGPSFHARGSAIARTYVYLVGA 117 Query: 119 R------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG----RHDFTTFRSIHCQASSP 168 L RA+ + + + L R + + Sbjct: 118 PPPEGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRGTVR 177 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + L+ + + + FL +R+ VG+ G G+ + L + R Sbjct: 178 TLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGR- 236 Query: 229 ECGPLAPPEGLYFDSVEY 246 G AP GL +V Y Sbjct: 237 YRGVRAPGWGLTLAAVRY 254 >gi|297242940|ref|ZP_06926878.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] gi|296889151|gb|EFH27885.1| tRNA pseudouridine synthase [Gardnerella vaginalis AMD] Length = 301 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 98/279 (35%), Gaps = 34/279 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPTLRTVQGDIEAALHMVLRVPENDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-----------ALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + + L L I ++++ Sbjct: 61 VHASHQVCHLDISDETLQRCIGHTGLDGVSALEYRLRHVLAQDIVIHKVSVAPYGFDARF 120 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 Y +A L S + A L+ + Sbjct: 121 SALERTYVYRIADGYCKAKYDPRMRGFVLRFDSELDIDAMNQAARLMVGLHDFGSFAKPN 180 Query: 164 QASSPIRTIDHFDVNS----------------FGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + IR + + +L+E +VA +F H +RS V + Sbjct: 181 PGGTTIRKVKQARWHRVGSKDAQNSTGFVLPIEQSLLEFTIVADAFAHNMVRSLVQACVQ 240 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +G GK + E+ + R+ P GL + V Y Sbjct: 241 IGCGKRSVDWFEEKINVPLREGSTGPIDPHGLTLEYVAY 279 >gi|86152100|ref|ZP_01070312.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] gi|85840885|gb|EAQ58135.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 260.94] Length = 240 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + L L I I + +S YR I + Sbjct: 60 ASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRICY 240 >gi|305432148|ref|ZP_07401314.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] gi|304444813|gb|EFM37460.1| tRNA pseudouridine synthase A [Campylobacter coli JV20] Length = 240 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + S+Q +++ A+ + G V A RTD GVHA V Sbjct: 1 MKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHL-GIFSSVLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + L + I ++ + +S YR I Sbjct: 60 ACVEC---GEHFRDLNYLKKQINKFSHPFIHVKNLKIMPSNFEVRYDVKSREYRYIFYHG 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +D + Q+ VG DF F + IR I S+ Sbjct: 117 VYNPFLASYVHFYPFIDVLKADLVLQNFVGIKDFKFFCKSGGDNKTTIREIFLAKAYSYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R A FL QIR V S+ V + K + +L++ ++ + + LAPP GLY Sbjct: 177 DFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQIEVKK-QYNHFLAPPCGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRISY 240 >gi|57237668|ref|YP_178916.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|62901173|sp|Q5HUW9|TRUA_CAMJR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|57166472|gb|AAW35251.1| tRNA pseudouridine synthase A [Campylobacter jejuni RM1221] gi|315058277|gb|ADT72606.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni S3] Length = 240 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+G+ + G Q + +Q ++ A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGTAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + L L I I + +S YR I + Sbjct: 60 ASVEC---GDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRICY 240 >gi|319955610|ref|YP_004166877.1| tRNA pseudouridine synthase a [Cellulophaga algicola DSM 14237] gi|319424270|gb|ADV51379.1| tRNA pseudouridine synthase A [Cellulophaga algicola DSM 14237] Length = 264 Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 112/260 (43%), Gaps = 14/260 (5%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGV 55 M R Y + +++ G Y GWQ+Q +I+ + K + + + + GAGRTD+ V Sbjct: 1 MQRIRYYYLVKLQFLGFRYSGWQKQPGQKTIEAMLVKTLKFILPDQKFKILGAGRTDAKV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL L + V+ + I IL+++ VD+ F+ ++ + Y+Y Sbjct: 61 SALDAAFELYLDDTPIEVLEDFLALFNKNLPPDIRILSMTEVDESFNIIQNSKEKEYIYL 120 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + +LD + M+ A++ G H+F ++ + + + IRT++ Sbjct: 121 FSFGEKSHPFCAPYLVTFLDNLDLDKMKTVAKYFEGTHNFKSYTARIQENTKVIRTVNSC 180 Query: 176 DVNSFGNL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + L V F+ QIR +G L VG G+ + ++ +L+ ++ Sbjct: 181 GIIENKILEANFFPEKSYAFHVKGEGFMRYQIRMMMGVLVQVGKGELSEEEVLNSLKEEN 240 Query: 227 RKECGPLAPPEGLYFDSVEY 246 + +AP GL + V++ Sbjct: 241 NMQLPFVAPGSGLILNQVDF 260 >gi|220917510|ref|YP_002492814.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] gi|219955364|gb|ACL65748.1| tRNA pseudouridine synthase A [Anaeromyxobacter dehalogenans 2CP-1] Length = 272 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 16/258 (6%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y+G + G+QRQ ++Q ++E+A+ + G +H A RTD+GVHAL Sbjct: 1 MERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F PV L LN L + I +L+ + V FHAR SAI R+Y+Y + Sbjct: 60 AQVVSFSARAALDPVALRGGLNEGL--PEGILVLDAARVGPSFHARGSAIARTYVYLVGA 117 Query: 119 R------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVG----RHDFTTFRSIHCQASSP 168 L RA+ + + + L R + + Sbjct: 118 PPPVGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRGTVR 177 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + L+ + + + FL +R+ VG+ G G+ + L + R Sbjct: 178 TLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGR- 236 Query: 229 ECGPLAPPEGLYFDSVEY 246 G AP GL +V Y Sbjct: 237 YRGVRAPGWGLTLAAVRY 254 >gi|283957185|ref|ZP_06374649.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] gi|283791361|gb|EFC30166.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 1336] Length = 240 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + L L I I + +S YR I + Sbjct: 60 ASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRICY 240 >gi|115375174|ref|ZP_01462441.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115367825|gb|EAU66793.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 221 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 96/203 (47%), Gaps = 3/203 (1%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 + AGRTDSGVHA QV FD R+ + LN L + I+++ V F R Sbjct: 1 MVAAGRTDSGVHATGQVVCFDTERQLPLKAYHRGLNGLL--PEDIAVVRAEEVSAAFDPR 58 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + + Y YR+ + L + W I L E M AA L+GRHD++ FR+ CQ Sbjct: 59 RWSRGKRYRYRVSNLPSRSPLRRHTHWEIYAPLQVEAMARAATSLLGRHDYSAFRASDCQ 118 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 A+ +R + V VV +FL +R+ VG+L VG G+ + + L Sbjct: 119 AAHAVREVRRLSVEGTPGDAVAFVVEGTAFLKHMVRNLVGTLVEVGKGRRPEAWVAEVLA 178 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 + DR GP APP GL + V Y Sbjct: 179 SGDRTLAGPTAPPHGLVLEEVFY 201 >gi|164686559|ref|ZP_02210587.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] gi|164604428|gb|EDQ97893.1| hypothetical protein CLOBAR_00126 [Clostridium bartlettii DSM 16795] Length = 201 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 V +GRTD+GVHAL QVA+F + L ALNA L ISI++ VD FHA Sbjct: 2 KVTASGRTDAGVHALGQVANFKTESKIPADRLPDALNAKL--PKDISIISCEEVDIDFHA 59 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R++A ++Y Y I + L K ++ + LD + +R+ A+ L+G HDF F S Sbjct: 60 RYNACGKTYRYLIYNKPYRSPLYKDLSYHVRYDLDLDKIRLEAKSLIGTHDFGGFMSSGS 119 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RTI D+ +I I V FL+ +R VG+L +G G+ ++E+ + Sbjct: 120 SVKDTVRTIYDVDIQENDGMISIEVSGNGFLYNMVRIIVGTLVDIGRGRIK-HNMEEIIN 178 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 ++ R CG AP GL+ V Y Sbjct: 179 SKSRSMCGHTAPAHGLFLKKVNY 201 >gi|167005448|ref|ZP_02271206.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81-176] Length = 240 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + L L I I + +S YR I + Sbjct: 60 ASVGC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRICY 240 >gi|154503357|ref|ZP_02040417.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] gi|153796024|gb|EDN78444.1| hypothetical protein RUMGNA_01181 [Ruminococcus gnavus ATCC 29149] Length = 252 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 8/249 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQ---RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + +EY+G+ Y GW+ +++N ++ G I A+ + E + + A +TD GVHA Sbjct: 1 MQTLMLTVEYDGTRYAGWKAAPKKENLDTVLGRIHTALARLLKEDIQLFCAAKTDPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ F +P L +LN L I++L+ V ++FHA + I Sbjct: 61 RGQILSFQTTSSLLPSALKSSLNQVL--PQDIAVLDARQVSERFHAELLPKHCIWELCIK 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T P + +P D M+ A L GRHD F + + + +R + + Sbjct: 119 TGPTPDVFRQKYTLFLPDLPDPLRMQEAFSFLKGRHDVRCFSPVK-KKKAIMRELYSLRI 177 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + +++ + FL + + L +G G + + A + G AP Sbjct: 178 EHSDDEMQLFLEGSDFLPFMPATLMQLLLDIGTGTLDACCIPSIF-AGEHSYSGH-APAH 235 Query: 238 GLYFDSVEY 246 LY + Y Sbjct: 236 ALYLHDIVY 244 >gi|157415094|ref|YP_001482350.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 81116] gi|172047118|sp|A8FLN6|TRUA_CAMJ8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|157386058|gb|ABV52373.1| putative tRNA pseudouridine synthase [Campylobacter jejuni subsp. jejuni 81116] gi|284926072|gb|ADC28424.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni IA3902] gi|307747736|gb|ADN91006.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni M1] gi|315927713|gb|EFV07042.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315931164|gb|EFV10137.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni 327] Length = 240 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 90/245 (36%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHL-GIFSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + L L I I + +S YR I A Sbjct: 60 ASVEC---GDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHA 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY Sbjct: 177 DFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYL 235 Query: 242 DSVEY 246 + Y Sbjct: 236 SRICY 240 >gi|291276765|ref|YP_003516537.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] gi|290963959|emb|CBG39798.1| putative tRNA pseudouridine synthase [Helicobacter mustelae 12198] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 11/251 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M+ I Y+GS +FG+ +Q +G S+ ++E A+ G + GAGRTD GVHA Sbjct: 1 MMFIAAKIAYDGSKFFGFAKQDDGHKSVVQALEFAL-KSLGITSNIIGAGRTDRGVHATG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV ++ W L LN L S + + FH RFSA +R Y Y Sbjct: 60 QVIRVEIPDFWELERLRNLLNQKLHPSIFLRRIWRVEAS--FHPRFSAKKREYRYIFGNY 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + D + + A VG+ DF F + IR I H + + Sbjct: 118 LGNVW--MASYVSWERYGDKKRISEALNLFVGKRDFGYFCKSGSDNKTTIRQIYHTRLYT 175 Query: 180 FGNLIE----IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + A FL+ QIR +G++ + T +LE + A+ R P A Sbjct: 176 HQIFKHDYLVACIQANGFLYGQIRLMMGAVLAYSRKELTYEELELQVLAKKRFYSIP-AS 234 Query: 236 PEGLYFDSVEY 246 P GLY + Y Sbjct: 235 PNGLYLSKIFY 245 >gi|229818212|ref|ZP_04448494.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] gi|229784463|gb|EEP20577.1| hypothetical protein BIFANG_03510 [Bifidobacterium angulatum DSM 20098] Length = 302 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 105/283 (37%), Gaps = 39/283 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW Q + ++QG IE+A+ + E + + AGRTD+G Sbjct: 1 MRLRIDLAYDGGGFYGWAVQPDIRTVQGEIEQALHRILRVDPNDASEPLRLVVAGRTDTG 60 Query: 55 VHALRQVAHFDLVRE-------WVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + V AL L+ D I+I +S F ARF Sbjct: 61 VHASHQVCHIDMSPDILERAVGHMKVPAVTALEHRLQRVLPDDITIHRISEAPVGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKS-----------------LDCENMRIAAQH 148 SA+ R+Y+YRI R + + L D + Sbjct: 121 SALERTYVYRIADRSSEVDPRLRGCVLHIDGDLDIEAMNLAAAQTIGLHDFGSFATPNPG 180 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI----EIRVVARSFLHTQIRSFVGS 204 + A I +VA +F +RS V Sbjct: 181 GTTIREVKQADWARVPAQPLIAQPMAGKGYVVPTFESGLVCFTIVADAFARNMVRSLVNG 240 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG K + + R+ GP+AP +GL + V Y Sbjct: 241 CVQVGLDKRDLDWFKGKMAVPKREGSTGPIAP-QGLTLEHVAY 282 >gi|322378343|ref|ZP_08052800.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] gi|321149229|gb|EFX43672.1| tRNA pseudouridine synthase A [Helicobacter suis HS1] Length = 244 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 106/250 (42%), Gaps = 10/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R+ +++ Y+GS + G+ +Q +++G + KA+ + + AGRTD GVHA Q Sbjct: 1 MRRFKLVLAYDGSAFSGFAKQAGLYTVEGRLIKALESL-QIPSKILAAGRTDRGVHATHQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F+ W L K L L I+ +L V FH RF A RR Y Y + + Sbjct: 60 VIAFNTCDIWSSSKLLKHLAPKL--GYFIACKSLEEVPLSFHPRFEATRRRYRYFLSLAK 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L R D ++ A + G HDF F S IR+I + Sbjct: 118 PSPFL--SRFVGYHPCGDMGILKQALELFKGEHDFKFFSKSGSDPKSTIRSIYKAFCYPY 175 Query: 181 GNLI----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + A SFL +Q+R +G+ + + DL K + Q R ++P Sbjct: 176 MLYNLPCLVLVFEANSFLRSQVRLMLGAALACSLKQISLEDLYKQITLQRRFLMRAVSPS 235 Query: 237 EGLYFDSVEY 246 GLY SV Y Sbjct: 236 -GLYLSSVFY 244 >gi|120436099|ref|YP_861785.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] gi|117578249|emb|CAL66718.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803] Length = 262 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 101/261 (38%), Gaps = 15/261 (5%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGV 55 M R Y + ++Y G GWQ+Q + +++G + K + ++ + G RTD+ V Sbjct: 1 MFRKRFYYFIKVQYLGYRLHGWQKQPDVKTVEGLVTKTLGWVIPDAKYKILGTSRTDAMV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A L E + + + I L++ VD +F+ + + Y Y Sbjct: 61 SAEESAFELFLDHEPLEDLDGFLHLFNKNLPQDIRALSIEEVDDKFNIIQHSKTKEYAYL 120 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + LD + M+ AA+ G H+F + + S+ R + Sbjct: 121 FSIGDKFHPFCAPFMANFQEDLDVDRMKEAAKLFHGIHNFRNYCIRVSEKSTFEREMLKS 180 Query: 176 D---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + + A FL Q+R +GSL LVG G+ + D+E +L+ Sbjct: 181 ELVENDIYTANFFPEKSYIFHIHASGFLRHQVRLMMGSLVLVGRGELSLQDIEDSLKPDS 240 Query: 227 RKECG-PLAPPEGLYFDSVEY 246 + +AP GL +E+ Sbjct: 241 PQLQMDYIAPASGLILRKIEF 261 >gi|269925860|ref|YP_003322483.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] gi|269789520|gb|ACZ41661.1| tRNA pseudouridine synthase A [Thermobaculum terrenum ATCC BAA-798] Length = 240 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 9/246 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + ++I Y G + G Q Q ++Q +E A VTG AGRTD+GV AL Q Sbjct: 1 MSTWKLVISYKGEYFSGSQIQPGKRTVQEELENAWEKVTGSRCRAVLAGRTDAGVSALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VA P L + L YL I I + V F AR SAI R Y Y Sbjct: 61 VATIKADWPGTPEELLEKLRKYLTQG--IEIRKVERVSDNFDARKSAIWRRYRYVF---- 114 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + + + + + + F + + + + + + Sbjct: 115 SKDEIARFGFISVESMRQAARALVGEKDF---AAFASQSELGPRGTVRRILDINVIWDKA 171 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 N + I +VA +FL +R V +L VG GK +L +A++ + R+ AP + L Sbjct: 172 ANNLCIEIVADAFLRQMVRRIVSALIWVGTGKIEVVELLRAVEIKARQLLPGPAPAKNLT 231 Query: 241 FDSVEY 246 V Y Sbjct: 232 LVEVGY 237 >gi|294786442|ref|ZP_06751696.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315226006|ref|ZP_07867794.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] gi|294485275|gb|EFG32909.1| tRNA pseudouridine synthase A [Parascardovia denticolens F0305] gi|315120138|gb|EFT83270.1| tRNA pseudouridine synthase A [Parascardovia denticolens DSM 10105] Length = 338 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 103/318 (32%), Gaps = 73/318 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT--------GEIVVVHGAGRTDS 53 +R + Y+G+ + GW RQ ++QG +E I V G + + AGRTD+ Sbjct: 1 MRLRIDCSYDGTAFHGWARQPGQRTVQGELEATIAKVLHLWKPDDDGHPITLVVAGRTDA 60 Query: 54 GVHALRQVAHFDLVR----------EWVPVILCKALNAYLKI--SDTISILNLSIVDKQF 101 GVHA QV H DL + +AL L+ IS+ ++ F Sbjct: 61 GVHASGQVCHLDLEDEVLSVAMGHLDPATYRPWEALAYRLRRILPADISVRSIFPSPAGF 120 Query: 102 HARFSAIRRSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFR 159 ARFSA R Y+YR+ + +G +P+ LD + M AAQ LVG + Sbjct: 121 DARFSASDRVYVYRVADESSAYDPRLRGFVLNLPRRLDLDLMNQAAQSLVGLHDFGSFSS 180 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL------------------------- 194 + ++ L + L Sbjct: 181 PNPGGTTIREVKFARWERVPTHPLGSSSYAGGASLSPTQAIGADPSAAGSISGFESCSGS 240 Query: 195 --------------------------HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 +RS V + VG GK L R+ Sbjct: 241 NPDSPYRVDSVESGLLIFTIIADAFAKNMVRSLVNACLQVGMGKKGLDWFAGKLAHPVRE 300 Query: 229 ECGPLAPPEGLYFDSVEY 246 AP GL + V Y Sbjct: 301 GASGPAPACGLTLEKVNY 318 >gi|313140894|ref|ZP_07803087.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] gi|313133404|gb|EFR51021.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 304 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 127/282 (45%), Gaps = 38/282 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+G Sbjct: 5 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTG 64 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL L+ I+I ++++ F ARF Sbjct: 65 VHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARF 124 Query: 106 SAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC- 163 SA+ R+Y+YR+ R + +G + LD M AA +G HDF +F + + Sbjct: 125 SALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPG 184 Query: 164 -------QASSPIRTIDHF-----------DVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + + R + +L+ +VA +F +RS VG Sbjct: 185 GTTIREVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGC 244 Query: 206 KLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 245 IQVGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAY 285 >gi|311064868|ref|YP_003971594.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] gi|310867188|gb|ADP36557.1| TruA tRNA pseudouridine synthase A [Bifidobacterium bifidum PRL2010] Length = 303 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 96/282 (34%), Gaps = 38/282 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+G Sbjct: 4 MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTG 63 Query: 55 VHALRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFHA 103 VHA QV H D+ E + + L L TI + ++ Sbjct: 64 VHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARF 123 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD--------- 154 Y + L L AA + Sbjct: 124 SALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPG 183 Query: 155 ---------FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 R + + +L+ +VA +F +RS VG Sbjct: 184 GTTIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGC 243 Query: 206 KLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 VG GK ++ + + R+ GP+AP +GL + V Y Sbjct: 244 IQVGMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAY 284 >gi|237752928|ref|ZP_04583408.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] gi|229375195|gb|EEO25286.1| tRNA pseudouridine synthase A [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 9/247 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + M I YNG +FG+Q Q N S+ +E V G + +GRTD GVH+ QV Sbjct: 10 FKVAMRIAYNGGAFFGFQSQSNVQSVANVLEDVFKSV-GVFSKIAASGRTDKGVHSSAQV 68 Query: 62 AHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 ++ W + K LNA L + I + V FHARFSA RR Y Y + Sbjct: 69 ISLEIPYFWKNLENLKVCLNAKLAPNLFIKHIW--EVGDDFHARFSATRRGYCYVLSKHF 126 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + + ++ A + LVG H+F F+ S +R+I D+ F Sbjct: 127 SPFLTPFSLHYNLK---NPNLIKQALKLLVGTHNFGAFKKQGSGEKSSVRSIFRADLREF 183 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + FL +Q+R VG L + G T LE L + R P+AP GLY Sbjct: 184 KGFWILSFWGNGFLRSQVRLMVGFLLEIDKGNLTLEALEAQLNGEMR-YRIPIAP-NGLY 241 Query: 241 FDSVEYS 247 V+++ Sbjct: 242 LSRVDFN 248 >gi|308178101|ref|YP_003917507.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] gi|307745564|emb|CBT76536.1| tRNA pseudouridylate synthase A [Arthrobacter arilaitensis Re117] Length = 311 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 79/257 (30%), Positives = 120/257 (46%), Gaps = 13/257 (5%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R M++ Y+G+ Y GW RQ N +Q +E+A+ ++ V V AGRTD+GVHA RQV Sbjct: 26 RMRMVLGYDGAAYSGWARQPNVLGVQQLVEEALEMLIRRQVRVVVAGRTDAGVHARRQVV 85 Query: 63 HFDLVREWVPVILCKA-----------LNAYL-KISDTISILNLSIVDKQFHARFSAIRR 110 HFDL E + KA +N L + + + + F ARFSA+ R Sbjct: 86 HFDLTEEEYTSLPRKAPLAPGPALVRRINGILGRQDGAVWVHEAERAPEGFDARFSALAR 145 Query: 111 SYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y YRI +Q L + + LD E M A+ ++GRHDF T+ A++ Sbjct: 146 RYSYRIADGQQRWDPLTRQLTTWHREELDVEAMNREARSVLGRHDFLTYCKPRPHATTIR 205 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + L+ + A +F H +R+ +G+ +VGDG+ L + L+ R Sbjct: 206 TLQEFTFTRGADGLVLAHLKADAFCHNMVRALIGAAMMVGDGREQPGFLAERLELMVRDS 265 Query: 230 CGPLAPPEGLYFDSVEY 246 L+ P L + V Y Sbjct: 266 KTKLSHPRALVLEEVYY 282 >gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP-6] Length = 271 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 22/245 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + + Y G Y+G+Q+Q + ++ + +A+ + AGRTD GV AL QV Sbjct: 1 MKVALKLAYLGDNYYGFQKQPDRVTVDSQVRRALAQIGVIHGDFCYAGRTDRGVSALGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F + + + + + +N L I SI F AR++A+ R Y Y + Sbjct: 61 IDFWIDEDKIDLTRPRCVNGRL--PRDIWTWAWSIAPVGFSARWNALWREYQYLLWHPGL 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L + A ++ D FR+ ++ ++ ++ Sbjct: 119 DRDLMEEAADMLLGEHD-------------------FRNFSSAKVGTVKRVEKLEIRERD 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 L + A FL +R VG+ + VG G+ + L+ + P AP EGL Sbjct: 160 GLFIFDIRADGFLWNMVRKIVGATEKVGSGQKDMRWFKDLLR-PELNHGAPTAPAEGLIL 218 Query: 242 DSVEY 246 V Y Sbjct: 219 MEVGY 223 >gi|140053519|gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula] Length = 361 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 140/316 (44%), Gaps = 71/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ +FG+Q+Q ++ G +E A G+ V V + RTD+GVHAL V Sbjct: 42 QRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALSNV 101 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFSAIR 109 H D+ + P ++ +A+N +L+ + ++++++ V FHAR+ A Sbjct: 102 CHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKAQE 161 Query: 110 RSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ + EK RAW IP+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 162 RTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSP 221 Query: 169 IRTIDHFD--------------------------VNSFGNLIEIRVVARSFLHTQI---- 198 IR++D N + + S ++ Sbjct: 222 IRSLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASK 281 Query: 199 -----------RSFVGSL-----------KLVG------DGKWTSTDLEKALQAQDRKEC 230 R V + LVG G T TD+E+ L A+ Sbjct: 282 EDVGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTAT 341 Query: 231 GPLAPPEGLYFDSVEY 246 P+AP GLY V+Y Sbjct: 342 SPMAPACGLYLGEVKY 357 >gi|189023111|ref|YP_001932852.1| tRNA pseudouridine synthase A [Brucella abortus S19] gi|189021685|gb|ACD74406.1| tRNA pseudouridine synthase [Brucella abortus S19] Length = 207 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 110/202 (54%), Positives = 142/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L + + ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|306840229|ref|ZP_07473004.1| tRNA pseudouridine synthase A [Brucella sp. BO2] gi|306289834|gb|EFM61013.1| tRNA pseudouridine synthase A [Brucella sp. BO2] Length = 207 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 111/202 (54%), Positives = 142/202 (70%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L + + ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA++ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVDYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G++IE+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMIEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|91215693|ref|ZP_01252663.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91186159|gb|EAS72532.1| putative tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 5/225 (2%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL-CKALNA 81 + S+Q + A+ E V V GAGRTD+GVHA VAHFD ++ + LN+ Sbjct: 2 HEISVQSQVNLALKTALQETVDVVGAGRTDTGVHASGYVAHFDSSQKIFDFKMLAFKLNS 61 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L + + FHARF AI R+Y Y II Q GR++L+ L+ + Sbjct: 62 ILPPDIAVQSVVGVKD--DFHARFDAISRTYRYSII--QTKDPFSVGRSYLVKNELNLQV 117 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A+ L +F +F + + I+ + G+ + + A FL +R+ Sbjct: 118 MQNASNLLFNHKNFKSFSKVKTDVYTFDCHIEKVEWQKEGHHLFFEITANRFLRNMVRAI 177 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+L VG K + + + A+DR + G P L +++Y Sbjct: 178 VGTLIEVGLEKISVEEFNDIILAKDRSKAGKSVPAHALVLTNIKY 222 >gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter thermautotrophicus str. Delta H] gi|3915162|sp|O26928|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus str. Delta H] Length = 275 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 M + + + Y G+ Y G+QRQ + +++G + +A+ + AGRTD GVH Sbjct: 1 MRKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGIIEDPKRARFQIAGRTDRGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL F + + L I +L + V F R+ R Sbjct: 61 ALGNFVSFFTEEDIHVNQINDLL------PRDIRVLAWASVMYPFKVRYPLERHYR---- 110 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 +S+D +M AA H G HDF+ F P+R I+ Sbjct: 111 ------------YILHREESMDTYSMAEAAAHFRGTHDFSNF--SRRSDRDPVRRINDVR 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ G+ I I V SFL +R V +L +V +G+ D+ L DR+ PP Sbjct: 157 ISEVGDSIIIDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDT-DRRVFLEPMPP 215 Query: 237 EGLYFDSVEY 246 E L ++Y Sbjct: 216 ENLILMDLKY 225 >gi|306838494|ref|ZP_07471334.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] gi|306406426|gb|EFM62665.1| tRNA pseudouridine synthase A [Brucella sp. NF 2653] Length = 207 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 110/202 (54%), Positives = 141/202 (69%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L + + ISILN+ F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMADERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLVGVDYA 204 >gi|298253049|ref|ZP_06976841.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] gi|297532444|gb|EFH71330.1| tRNA pseudouridine synthase A [Gardnerella vaginalis 5-1] Length = 305 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 110/283 (38%), Gaps = 38/283 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSG 54 +R + + Y+G G++GW +Q ++QG IE A+ +V E + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGGFYGWAKQPVLRTVQGDIEAALHMVLRVPKNDPTESLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ E + + AL LK IS+ +S+ F ARF Sbjct: 61 VHASHQVCHLDVCEETLLRCVGHTGLDGVCALEYRLKHVLPQDISLHKVSVAPIGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ------------------ 147 SA+ R+Y+YRI + + K D ++ Q Sbjct: 121 SALERTYVYRICDASDYCDYDPRMRGFVLKLDDVLDVDAMNQAARLMIGLHDFGSFARPN 180 Query: 148 ----HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 + R ++ L+E +VA +F H +RS V Sbjct: 181 PGGTTIRDVKSVCWERVGTRANDVRVKLKTGCVPPVEQGLLEFTIVADAFAHNMVRSLVQ 240 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +G GK + E+ + R+ P GL + V Y Sbjct: 241 ACVQIGCGKRSFDWFEEKINVPLREGSTGPIDPHGLTLEYVAY 283 >gi|296274435|ref|YP_003657066.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] gi|296098609|gb|ADG94559.1| tRNA pseudouridine synthase A [Arcobacter nitrofigilis DSM 7299] Length = 240 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + M I Y+G Y G QRQ N S++ + + F + + +GRTD VHA QV Sbjct: 1 MNVKMTISYDGFSYQGSQRQTNKKSVEDRLIEV-FKILNIEPKITLSGRTDKQVHATGQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + W + K + Y K+ +I I + V+ +FHARF A +R Y Y I T++ Sbjct: 60 FNIVIPAYWSNFLKLKQVMNY-KLPSSIRIRKIQKVNDEFHARFHAKKRVYRYVISTKEV 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L K ++ E ++ A + +G HDF F + + +R I + Sbjct: 119 SPFLAN--YVTFVKEINEEKIKEAIKLFIGVHDFEYFHKSGSEKDNKVREIFDAKFYKYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + R A S+L +QIR VG L + +GK + DL+ L ++++ A P GLY Sbjct: 177 DFYIFRFEANSYLRSQIRIMVGFLLKISEGKLSKNDLKAQL-SREKYIYKTPALPNGLYL 235 Query: 242 DSVEY 246 V+Y Sbjct: 236 SQVKY 240 >gi|89890078|ref|ZP_01201589.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] gi|89518351|gb|EAS21007.1| tRNA pseudouridine synthase A [Flavobacteria bacterium BBFL7] Length = 267 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 11/250 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q + +++ +++ + V V AGRTD+ V + Sbjct: 11 YLIKLQYLGFRFHGWQKQPDVPTVEKMVKRTLRFVLDHHNFKVLAAGRTDARVSVNETII 70 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E + + A L + I L++ + QF+ + Y+Y + Sbjct: 71 ELFLDDEALNLDTFLAEF-NLNLPSDIRALDIEETNAQFNVIQHPKEKEYIYLFSHGEKF 129 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + LD E M+ AA+ G H+F ++ + + T++ + Sbjct: 130 HPFCASLMVYMKTELDIELMKTAARLFEGTHNFWSYTYKPSDTTDTVSTVNSCHIEENNL 189 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 RV F Q+R +G+L +G K T D + L + + Sbjct: 190 FTANFFPEESFVFRVTGMGFKRHQVRLMMGALFDLGMHKITLEDFKATLDGSKKIHLSHI 249 Query: 234 APPEGLYFDS 243 AP GL Sbjct: 250 APASGLMLYR 259 >gi|313674169|ref|YP_004052165.1| tRNA pseudouridine synthase a [Marivirga tractuosa DSM 4126] gi|312940867|gb|ADR20057.1| tRNA pseudouridine synthase A [Marivirga tractuosa DSM 4126] Length = 261 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 102/253 (40%), Gaps = 12/253 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ Q ++QG +EK + + GE + GAGRTD+ V A Sbjct: 9 YLVEIQYLGFRYHGWQFQHGLKTLQGMLEKTLNFLFQGEKFKILGAGRTDAMVSAESAYF 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + LN L I++LN+ IVD +F+ ++Y Y + Sbjct: 69 ELFTNQALDLESFARELNENL--PADINVLNVEIVDSKFNIIQDVRLKTYQYYFASVNKK 126 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 I SLD M+ AA+ G +DF F + S +R I + Sbjct: 127 YPFAAPLMNCIHHSLDISKMKEAARLFEGENDFRHFMVGDAENKSIVREIKESRIEENTA 186 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 L V + F+ Q+R +G+L +G + + DLE ALQ Sbjct: 187 LRASFFPEKSYVFIVKGKGFMRYQVRMMMGALIRIGRNEISLQDLEHALQGNPPNFTKLN 246 Query: 234 APPEGLYFDSVEY 246 A GL VE+ Sbjct: 247 AAASGLMVKEVEF 259 >gi|224418450|ref|ZP_03656456.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253827766|ref|ZP_04870651.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313141982|ref|ZP_07804175.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|253511172|gb|EES89831.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] gi|313131013|gb|EFR48630.1| tRNA pseudouridine synthase A [Helicobacter canadensis MIT 98-5491] Length = 240 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 95/246 (38%), Gaps = 6/246 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 MI+ M I Y G +FG+QRQK+ +I G +E+ V V + G+GRTD GVHA Q Sbjct: 1 MIKVAMRIAYYGGEFFGFQRQKDKITICGVLEEVFRSVGIFDVCM-GSGRTDKGVHASAQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + + K L + + +FH RFS RR Y Y + + Sbjct: 60 VISVSIPEFHRDLQRLKQLLNVKLYPWIKIKQIWQVEN-EFHVRFSVKRRGYCYVLSQKY 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 +P + + ++ +R I H + Sbjct: 119 SPFLALFSHFYPLKNPF--LVQESLDIFRGVYDFSAFMKNGGSGCEGSVREIFHTKLLKR 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G I FL +QIR VG L + G DL+K L + K APP GL+ Sbjct: 177 GEFYLISFWGNGFLRSQIRLMVGFLLEIDRGNLGIEDLKKQLLGE--KIFSIPAPPNGLF 234 Query: 241 FDSVEY 246 V+Y Sbjct: 235 LSRVDY 240 >gi|147865780|emb|CAN81146.1| hypothetical protein VITISV_020811 [Vitis vinifera] Length = 403 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 24/254 (9%) Query: 16 FGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 GWQ Q++ +IQ +EKA+ T E + + GA RTD+GVHA QVAHF + Sbjct: 123 RGWQYQQSPPTIQCIVEKALTRATKLEREDLYLVGASRTDTGVHAWGQVAHFLTPFNYDG 182 Query: 73 VILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + A LN L I + +S +FHARFS + Y Y+I + + Sbjct: 183 LESIHAALNGLL--PPDIRVREISPAVPEFHARFSXKSKIYHYKIYNDAVMDPFLRHYVY 240 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--RTIDHFDVNSFGNLI----- 184 L+ MR AA+H G+HDF+ F + SP + I FDVN L Sbjct: 241 HSVYKLNTLAMREAAKHFTGKHDFSAFVNASHNDRSPNPVKNIFRFDVNEMMFLELIVNC 300 Query: 185 --------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---L 233 ++ V FL+ Q+R+ V L +G + L +DRKE Sbjct: 301 IIAQGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPPNIVPWILATRDRKELAKYALS 360 Query: 234 APPEGLYFDSVEYS 247 APP GL SV+Y+ Sbjct: 361 APPHGLCLMSVKYN 374 >gi|289581033|ref|YP_003479499.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Natrialba magadii ATCC 43099] Length = 293 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 98/261 (37%), Gaps = 27/261 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGV 55 +R + Y+G+GY+G+QRQ + +++ ++ A+ + + AGRTD+GV Sbjct: 1 MR-AFRLAYDGTGYYGFQRQPDVPTVEDAMFDALRALDVLAPDADKPAGYAAAGRTDAGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL Q F+ + +A N L I + +FHA A R Y Y Sbjct: 60 SALAQTVAFEAPDW----LTPRAFNGEL--PADIRAWAAADAPDEFHATHHAREREYTYY 113 Query: 116 IITRQAPLAL--------EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 + A + + ++D + + A L G HDF Sbjct: 114 LYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRFQAACDALSGPHDFHNLTPDDHNTER 173 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 D + + V A F +R V + VG G+ +E+AL++ Sbjct: 174 SPVLESTRDGH----FRILTVTAGGFCRELVRRLVSLARDVGTGEANLQTIERALESDPL 229 Query: 228 K--ECGPLAPPEGLYFDSVEY 246 E APPE L VEY Sbjct: 230 PGHEGIAPAPPEPLVLTDVEY 250 >gi|255637177|gb|ACU18919.1| unknown [Glycine max] Length = 370 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 134/316 (42%), Gaps = 71/316 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q N ++ G +E+A G+ V V + RT +GVHAL V Sbjct: 50 QRYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGVHALSNV 109 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L+ + ++++ V FHARF A Sbjct: 110 CHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQE 169 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y YR+++ P EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SP Sbjct: 170 RIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSP 229 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIR-----------------------SFVGSL 205 IRT+D VN + H ++ + S Sbjct: 230 IRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASS 289 Query: 206 KLVGDGKW-----------------------------------TSTDLEKALQAQDRKEC 230 + VG GK T D+E+ L A+ Sbjct: 290 QDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAA 349 Query: 231 GPLAPPEGLYFDSVEY 246 P+AP GLY V+Y Sbjct: 350 SPMAPACGLYLGEVKY 365 >gi|306846234|ref|ZP_07478796.1| tRNA pseudouridine synthase A [Brucella sp. BO1] gi|306273485|gb|EFM55346.1| tRNA pseudouridine synthase A [Brucella sp. BO1] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 105/202 (51%), Positives = 137/202 (67%), Gaps = 1/202 (0%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ-FHARF 105 AGRTD+GVHA QVAH DL ++W + A+NA+L +++ + F ARF Sbjct: 3 AAGRTDAGVHATAQVAHVDLAKDWGAGKVRDAVNAHLVMAEERISILNVEKTTDTFDARF 62 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 SA R YLYRI R+APLA+ RAW + K LD + M AAQ L+G HDFTTFR+ CQA Sbjct: 63 SARARHYLYRIHNRRAPLAVNYQRAWWVQKQLDADAMHEAAQRLLGEHDFTTFRATQCQA 122 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 SP++T+D DV G+++E+RV ARSFLH Q+RSF GSL VG G+WT+ DL+ AL+A+ Sbjct: 123 KSPVKTLDRLDVTRNGDMVEMRVSARSFLHNQVRSFAGSLMEVGVGRWTADDLQAALEAR 182 Query: 226 DRKECGPLAPPEGLYFDSVEYS 247 DRK CG +APP GLY V+Y+ Sbjct: 183 DRKACGQVAPPYGLYLIGVDYA 204 >gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21] Length = 271 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 81/250 (32%), Gaps = 26/250 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVH 56 M++ + Y G+ Y G+QRQ N +I+G + +A + E AGRTD GV Sbjct: 1 MLKIAFKVAYIGTDYHGFQRQPNLPTIEGELLRAFKKSGISDSPEKSDYSIAGRTDRGVS 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V ++ + L + ++I + + N + R Sbjct: 61 ALGNVVCLKTDKDVTINRINYYLPSNIRIIGSTMVSNGFK-PRYAKLRHYRYILDKSLCP 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T L + + + +P R + D Sbjct: 120 NTLNLKLMKQAAKQMEGKHNYINF--------------------SKRSERAPERMVYSVD 159 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + I VV SFL +R V L + G + T +LE D Sbjct: 160 LVETPDNIVFDVVGESFLWNMVRKMVKVLVMFGREELTLENLETLFN-PDVPAAIKPVAS 218 Query: 237 EGLYFDSVEY 246 +GL V Y Sbjct: 219 DGLILMDVVY 228 >gi|261338249|ref|ZP_05966133.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] gi|270276903|gb|EFA22757.1| tRNA pseudouridine synthase A [Bifidobacterium gallicum DSM 20093] Length = 313 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 106/284 (37%), Gaps = 39/284 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVT---GEI---VVVHGAGRTD 52 M+R + + Y+G + GW Q N ++QG IE+A+ + E + AGRTD Sbjct: 1 MVRLRIDLAYDGFSFNGWAVQPQSNIRTVQGEIEQALARLLHDGNEPDYVPRLTVAGRTD 60 Query: 53 SGVHALRQVAHFDLVRE-------WVPVILCKALNAYL--KISDTISILNLSIVDKQFHA 103 +GVHA QV H D+ + V KAL L + D I+I +S + F A Sbjct: 61 AGVHASHQVCHLDVTEPMLDACVGHMRVEPVKALETRLSRMMPDDIAIHRVSFAPEGFDA 120 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL-------------- 149 RFSA+ R+Y+YRI + L + A L Sbjct: 121 RFSALERTYVYRISDAATDYDPRQLSYVWHTDHLLNMDAMNEAAALTLGLHDFGSFATPN 180 Query: 150 ------VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 R + + L+ +VA +F +RS V Sbjct: 181 PGGTTIREVKTAYWSRIPTRPLIANPMGERYHTPAIESGLLCFTIVADAFARNMVRSLVN 240 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 + VG GK + R+ GP+AP +GL + V Y Sbjct: 241 ACVQVGLGKRDVAWFAHKMAVPLREGSTGPIAP-QGLTLEHVAY 283 >gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1] gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1] Length = 276 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 27/247 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R I Y G+ +FG Q Q + +++G IE A + ++ + +GRTD GVHA Sbjct: 11 VRLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSGRTDRGVHA 70 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ P + +ALN L I + + + F+ R+ I R+Y Y Sbjct: 71 KCQILALST---HNPDLAVRALNGQL--PPDIWVSAWAYAPESFYPRYDVIIRTYRYYFS 125 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + D MR AA +G HDF F I SP++TID +V Sbjct: 126 RPPS----------------DINAMRDAAGLFLGTHDFRCFARIE-PGKSPVKTIDRIEV 168 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 S N + V A+SFL +R GSL V +G+ DL + L+ + + + P APPE Sbjct: 169 ISDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVKP-APPE 227 Query: 238 GLYFDSV 244 GL V Sbjct: 228 GLILWDV 234 >gi|78777192|ref|YP_393507.1| pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] gi|78497732|gb|ABB44272.1| Pseudouridylate synthase [Sulfurimonas denitrificans DSM 1251] Length = 236 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 93/246 (37%), Gaps = 11/246 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +II YNG+ + G Q QK ++I G++E A+ + E + +GRTD GVHA Q Sbjct: 1 MRCALIIAYNGTNFLGSQTQKESKNTILGTLEIALKKINIE-TKIVASGRTDRGVHASGQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V H DL W + L L SIL I + +YR I ++ Sbjct: 60 VCHIDLPPYWSDITK---LQDSLGRVLPPSILIKKIKIVDDTFHARYSAKRRVYRYIIKK 116 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A + D ++ + G DF F S R I Sbjct: 117 AKSNPFEENFVTFIDDTDFFEIQKNIKLFCGAFDFKFFMKSGGDIKSTTRVIYRAFAYEH 176 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + A FL +QIR VG+L ++ L+ + A GLY Sbjct: 177 KGFIVLNFEANGFLRSQIRLMVGALLS-----LNEDEILDKLECR-VNHKIKPAKSNGLY 230 Query: 241 FDSVEY 246 ++Y Sbjct: 231 LSKIKY 236 >gi|288932131|ref|YP_003436191.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] gi|288894379|gb|ADC65916.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642] Length = 256 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 89/242 (36%), Gaps = 29/242 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 I Y G+ + G Q Q +++G I KA E + AGRTD+GVHA+ V F Sbjct: 2 AFKIAYIGTNFHGSQYQPELRTVEGEIRKAFEKAGIEYGKIMFAGRTDAGVHAIGNV--F 59 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 E + K LN+ L + +S+ +VD+ F R + Sbjct: 60 ATDLEEFSKKVVKKLNSNL--PEDVSVWGYKVVDENFKPRKAK----------------- 100 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 R + + N+ + F + S +R + DV GNLI Sbjct: 101 ---WRKYCYVILDEGYNLEEMKEAAKHFVGKHDFGIFVRGSESCVREVYESDVEKRGNLI 157 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + A +F +R SL + GK + K L+ + APP GL V Sbjct: 158 YFSIKANAFAWNMVRRMASSLMIA--GKEGIEEFFKILKG---ERAVSAAPPNGLVLVDV 212 Query: 245 EY 246 Y Sbjct: 213 HY 214 >gi|302851591|ref|XP_002957319.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] gi|300257414|gb|EFJ41663.1| tRNA pseudouridine synthase [Volvox carteri f. nagariensis] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y MI+ Y+G+ Y GWQ Q + ++Q +E A+ V E V G AGRTD+GVHA Q Sbjct: 5 YRMIVSYDGTAYCGWQLQPSAPTVQRFLEGALCTVLREERAVLGVRAAGRTDAGVHARGQ 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F +E + LN+ L I +L +S F SA+ + Y Y I + Sbjct: 65 VVQFSCDKELDVTKMPYKLNSVL--PHDIRVLRMSRTAPDFSVTCSALGKCYRYSITNGE 122 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A + + LD MR AA L G HDF+ F +I + SP N Sbjct: 123 THDPLRHRYALHVRRHLDLAAMRSAAALLTGTHDFSQFSNIGEEGGSPDVQRRRRQRNPV 182 Query: 181 GNLIEIRVV-ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 L + VV FL+ +R G L VG+GK + + + L+ Sbjct: 183 KTLRRVDVVEGNGFLYKMVRHISGVLVAVGEGKLQTKAVGRMLE 226 >gi|118616627|ref|YP_904959.1| tRNA pseudouridine synthase A [Mycobacterium ulcerans Agy99] gi|118568737|gb|ABL03488.1| pseudouridine synthase a, TruA [Mycobacterium ulcerans Agy99] Length = 260 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 16/240 (6%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL----- 75 Q ++ G +++A+ V V + AGRTD+GVHA QVAH D+ + +P Sbjct: 2 QTGQRTVAGVLDEALTTVLRTPVRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSAR 61 Query: 76 ---------CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + L +L + + + Y Sbjct: 62 AGDPEFLPLVRRLARFLPADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQA 121 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 + + + + L + R + ++ IR + D + G+L+ Sbjct: 122 RYVTVWPRELDIDAMTVASQELLGLHNFAAFCR--RREGATTIRDLQRLDWSRNGHLVTA 179 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +V A +F + +RS VG+L VG+ + T + L A R AP GL V+Y Sbjct: 180 QVSADAFCWSMVRSLVGALLAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDY 239 >gi|313201346|ref|YP_004040004.1| tRNA pseudouridine synthase a [Methylovorus sp. MP688] gi|312440662|gb|ADQ84768.1| tRNA pseudouridine synthase A [Methylovorus sp. MP688] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 112/209 (53%), Gaps = 2/209 (0%) Query: 38 VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 + V V AGRTD+GVHAL QV HF+ E + +NA L ++ +L V Sbjct: 1 MACHPVRVIAAGRTDTGVHALAQVVHFETTTERPLNAWVRGVNAGL--PSSVRVLWAQQV 58 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 D +FHARFSA +R Y Y + + A+ G+ + LD + M AA HL+G HDF+ Sbjct: 59 DDEFHARFSARQRYYQYILFDQAVAPAILAGKVGWFHQPLDVDAMAEAAAHLIGEHDFSA 118 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 FR+ CQA SP+RT+ +V G I +FLH Q+R+ VG+L VG G Sbjct: 119 FRAAECQAKSPVRTLQQAEVRRAGQAILFEFSGNAFLHHQVRNMVGALVYVGKGSQPPAF 178 Query: 218 LEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +++ LQ+ DR+ P P+GLY V Y Sbjct: 179 IQQLLQSHDRRLAPPTFSPDGLYLSGVGY 207 >gi|170780769|ref|YP_001709101.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. sepedonicus] gi|169155337|emb|CAQ00440.1| putative pseudouridylate synthase [Clavibacter michiganensis subsp. sepedonicus] Length = 323 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 32/277 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHAL 58 +R + + Y+G+G+ GW +Q ++QGS+E A+ + T + AGRTD+GVHA Sbjct: 1 MRLRLDVAYDGTGFAGWAKQPGLRTVQGSLEDALAQLLARTPPAPTLVVAGRTDAGVHAT 60 Query: 59 RQVAHFDLVREWV----------------------------PVILCKALNAYLKISDTIS 90 QVAH DL + L + LN L + Sbjct: 61 GQVAHLDLTEAQIASLDRPPRGRAAEATAGEGQHVPTAARAASALARRLNGVLGARSDVV 120 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHL 149 +L + F ARFSA R+Y YR+ P L++ R +P +LD ++ AA L Sbjct: 121 VLACAPAPDGFDARFSATWRAYRYRVADADGPRDPLQRHRTVEVPVALDAAVLQEAADAL 180 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 +G HDF + AS+ + + + +E V A +F H+ +R+ VG+ Sbjct: 181 LGLHDFAAYCKPREGASTIRTLQELTWIRAADGALEAVVRADAFCHSMVRALVGACVAAA 240 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+ L + L+ ++R + P GL + V Y Sbjct: 241 SGRVPVARLRELLELRERTSEFTVMPARGLVLERVGY 277 >gi|222823975|ref|YP_002575549.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] gi|222539197|gb|ACM64298.1| tRNA pseudouridine synthase A [Campylobacter lari RM2100] Length = 244 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 5/243 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + Y+GS + G Q + S+Q ++E+A+ + + A RTD GVHA VA Sbjct: 3 LKLTFSYDGSKFQGSATQPHKLSVQDALEQALSHLGIYNKTLF-ASRTDKGVHANNGVAC 61 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + ++ K + + V + F RF +R+Y Y I + Sbjct: 62 VKVGEHFKDLLYLKNKINHFAHPFIHIKH-IQKVHENFQVRFDVKKRAYRYIISHERYNP 120 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 L ++ + + A G HDF F+ + R I V ++ N Sbjct: 121 FL--ASYVHFYPKINIQLAKKIASLFEGEHDFKLFQKEGSDNKTTTRIIYKSKVYTYKNC 178 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 A FL +QIR + S+ V + K + +L++ + A+ LAP GLY Sbjct: 179 TIFYFEANGFLRSQIRMMIASILKVLEKKISQENLKEQIDAKK-AHIRLLAPASGLYLSK 237 Query: 244 VEY 246 + Y Sbjct: 238 ISY 240 >gi|50364970|ref|YP_053395.1| tRNA pseudouridine synthase A [Mesoplasma florum L1] gi|62901303|sp|Q6F1W2|TRUA_MESFL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|50363526|gb|AAT75511.1| tRNA pseudouridine synthase I [Mesoplasma florum L1] Length = 251 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 11/253 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV-VVHGAGRTDSGVHALR 59 M ++ + +EY+GS + GW Q S+IQG + KAI VT V GA +TD+GVHA+ Sbjct: 1 MFKFLITLEYDGSDFHGWIEQPKTSTIQGELNKAINRVTKNAVFKTIGASKTDTGVHAID 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 Q DL + KA+N L + + + D + + Y Y I + Sbjct: 61 QKVLLDLGFNPKLDLFKKAINKALPETIKVRSIEEVKQDFN---IRDVLYKEYSYTINDK 117 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT-----TFRSIHCQASSPIRTIDH 174 + + + + +D + ++ +G H+F + + + IR I+ Sbjct: 118 EYNILSNRFELNWDFEEIDIDKLQNIFNLFIGEHEFKLFSGLNHKELDSNKITTIREIES 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD-GKWTSTDLEKALQAQDRKECGPL 233 DV + + I A+ F+ QIR V S K ++ ++++ LQ + K Sbjct: 178 IDVKRALDKVVITFKAKGFIRYQIRMIVQSALNCYLNKKISADEIKEKLQGKGNKP-PFN 236 Query: 234 APPEGLYFDSVEY 246 AP +GL + + + Sbjct: 237 APAKGLKLNKIVF 249 >gi|281202734|gb|EFA76936.1| hypothetical protein PPL_09688 [Polysphondylium pallidum PN500] Length = 275 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 129/275 (46%), Gaps = 47/275 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY + +Q +E+++ + + V + G+ RTD+GV+AL Q Sbjct: 1 MTRYRIK-----------------KPVQQVLEESLEVFIRKKVRLVGSSRTDTGVNALHQ 43 Query: 61 VAHFDLV----------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 VAHFD+ P ++ ALN + +++ IVD FH+RFSA R Sbjct: 44 VAHFDVDTRISKTGEEIDMMPPEVITMALNQN-VQGYPVRVISTEIVDDSFHSRFSAKSR 102 Query: 111 SYLYRI---ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 +YLYR+ + R K R W + LD M+ AA L GRH+F +FRS CQA + Sbjct: 103 TYLYRMLGGMHRNQAPFELKDRVWAVTNQLDVPKMQEAATLLCGRHNFNSFRSSKCQADN 162 Query: 168 PIRTIDHFDVNSFGNLIEIRV----------------VARSFLHTQIRSFVGSLKLVGDG 211 P+RTI F V N + AR+FLH Q+R V +L+ VG Sbjct: 163 PVRTISSFQVFDLPNPDIWQYNSAPLGVNPQLIGIEVKARAFLHNQVRIMVSTLERVGSH 222 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L++ + A+DR++ P APP L V Y Sbjct: 223 QMSLDQLQELIDAKDRQKAPPTAPPYPLTLTKVSY 257 >gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088] gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088] Length = 277 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 29/250 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIV--VVHGAGRTDSGVH 56 M + + + Y G+ +FG+QRQ + +++G + KA+ + E AGRTD GVH Sbjct: 1 MKKIALKVAYIGTHFFGFQRQPDLRTVEGELIKALVETGILDESGVARFRSAGRTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V F + + +N+ L I + A RR Y Y + Sbjct: 61 ALGNVVTFFTDEDVIINQ----INSCLPDDVYILGKASVPYGFKT---RYAYRRHYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + L K + D N S + +PIR I+ D Sbjct: 114 PNDGLNIELMKEASKKFEGRHDFTNF-----------------SRRVEERNPIRYIEKVD 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V G I + V+ SFL +R V L +G ++ +++ L +++ P+ PP Sbjct: 157 VVDKGEYIWVDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDTEEKVYIEPM-PP 215 Query: 237 EGLYFDSVEY 246 E L V Y Sbjct: 216 ENLILMKVMY 225 >gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5] Length = 265 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 101/256 (39%), Gaps = 14/256 (5%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M R Y + + Y G + G+QRQ ++Q ++E A+ L G + A RTD+GVHAL Sbjct: 1 MERRFYALRVAYEGGRFRGFQRQPGLPTVQDALEGAL-LAAGVRATLAVAARTDAGVHAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F P L ALNA L + +++L + V FHAR +A R Y+Y + Sbjct: 60 DQVVSFSARAALDPAALRGALNAAL--PEGVAVLEVLRVAPSFHARNTARARRYVYLVGA 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMR--------IAAQHLVGRHDFTTFRSIHCQASSPIR 170 P++ R A + R + + Sbjct: 118 PPPESLAAYAWTLPDPRAFPDGEARLDVAAMSAALAHAVGTHDFTAFARPGEQRGTVRTV 177 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T ++ L + FL IR+ G+ VG G+ + + L A+ R Sbjct: 178 TRAEVVSATWAPLHALVFEGHGFLRAMIRNLAGTAVTVGVGRAAPEIVRELLLARGR-YR 236 Query: 231 GPLAPPEGLYFDSVEY 246 G AP GL SV Y Sbjct: 237 GVRAPGWGLTLASVVY 252 >gi|159469598|ref|XP_001692950.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158277752|gb|EDP03519.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 239 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 100/237 (42%), Gaps = 16/237 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---AGRTDSGVHALRQ 60 Y +I+ Y+G+ Y GWQ Q ++Q +E A+ V E V G AGRTDSGVHA Q Sbjct: 5 YRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHARGQ 64 Query: 61 VAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 V L LNA L I ++ + F S I ++Y Y I Sbjct: 65 VRTGLTGRGGLPVDKLAYKLNAVL--PPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNS 122 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF----------RSIHCQASSPI 169 +A L A+ + K LD MR AA LVG HDFT F R + + Sbjct: 123 EAHDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRR 182 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + D +F + I V FL+ +R G L VG+ K + + L+ D Sbjct: 183 MDVVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >gi|147903104|ref|NP_001085529.1| tRNA pseudouridine synthase-like 1 [Xenopus laevis] gi|82236585|sp|Q6GQ53|PUSL1_XENLA RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|49115069|gb|AAH72895.1| MGC80334 protein [Xenopus laevis] Length = 298 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 29/272 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSI---QGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ Y G S+ Q +E A + + + RTDSGVHA+ Sbjct: 7 RYLVFFQYYGTKYSGVMETPITQSVLGVQNYLEVAAQKLRPVGTIKFFISSRTDSGVHAI 66 Query: 59 RQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 +AH D+ + IL +A+N +L+ + I +L V FHAR +A+ R+Y+ Sbjct: 67 CNLAHVDIERAKGKPPFTEEILVQAMNHHLQ-PEPIRLLKAIRVCDNFHARHNALSRTYV 125 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCEN---MRIAAQHLVGRHDFTTFRSIHCQA----- 165 YR+ + L L D N + A++ L+G H+F+ FRS + + Sbjct: 126 YRVAAGCSRPELPVFEGNLCWAIQDGLNVTAINEASKMLLGTHNFSAFRSANSENAFKSP 185 Query: 166 ---------SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + + H + + ARSFL+ Q+R G+L VG G+ T Sbjct: 186 IKTLQQADINPSCGILTHHWQSRNLQFWDFTFRARSFLYKQVRRMTGALVAVGQGRLTPQ 245 Query: 217 DLEKALQAQDRK--ECGPLAPPEGLYFDSVEY 246 +++ L+ QD +APP GL+ VEY Sbjct: 246 QIKEFLENQDPNCFLGNFVAPPHGLFLKDVEY 277 >gi|291550669|emb|CBL26931.1| Pseudouridylate synthase [Ruminococcus torques L2-14] Length = 260 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 22/264 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M + ++Y+G+ Y GW+R + N ++ IE + VTG V + RT+ GVHA Sbjct: 1 MQNIKLTLQYDGTRYLGWKRPEKDHNDRTVSYKIENVLEKVTGTPVTLFSGVRTEPGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDT---------------ISILNLSIVDKQFH 102 +F + P LN YL + Sbjct: 61 RNLTVNFLTESQLTPAEFKTVLNQYLPQDIAVLDAVSTPERFRADLNAREITYEYAMDLS 120 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 + ++Y R+ + + + + M AA L+G HDF F SI Sbjct: 121 PIYDLFHKNYRGRLTDLLSDSLFDLP-PEQTAELPNILLMETAAHSLLGTHDFKHFSSIR 179 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + I + + + IR+ A FL+ +G+L +G GK + L Sbjct: 180 -KKKGTEKEIKTITFVTEESTLYIRMTANDFLYQMAPFILGTLLDIGIGKRPVECINAIL 238 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 + +++ +GL + Y Sbjct: 239 EGKEKPSA--SCDTKGLILYDIVY 260 >gi|325287844|ref|YP_004263634.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] gi|324323298|gb|ADY30763.1| tRNA pseudouridine synthase A [Cellulophaga lytica DSM 7489] Length = 270 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 10/249 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + +++ G + GWQ+Q +I+G + K + + E + GAGRTD+ V AL Sbjct: 14 YLIRLQFLGYRFSGWQKQPGYKTIEGMLAKTLKFILPERQYKILGAGRTDAKVSALDAAF 73 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E + + + + I I+++ V ++F+ + + Y+Y + Sbjct: 74 ELFLDGEPLQDLDFFLKDFNKNLPSDIRIVSVKHVKEKFNIIQHSKEKEYVYLFSFGEKN 133 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 I +LD + M+ A VG H+F +F + + IR ++ ++ Sbjct: 134 HPYTAPFMANIQDNLDLDLMKKATSLFVGTHNFKSFTAKPKENGKFIRKVNSAEIKENTI 193 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 L + F+ Q+R +G+L +G G+ T +D+E+AL+ + + Sbjct: 194 LKANFFPKKSYAFHIKGEGFMRYQVRMLMGALIQLGKGEVTLSDIEEALKPNSTTKFVFV 253 Query: 234 APPEGLYFD 242 AP GL Sbjct: 254 APGSGLMLH 262 >gi|307168411|gb|EFN61571.1| tRNA pseudouridine synthase-like 1 [Camponotus floridanus] Length = 305 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 37/283 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTGEIVV---VHGAGRT 51 M+RY + Y G+ Y G Q+Q ++ SIQG++E A+ ++ + ++ + + RT Sbjct: 1 MVRYLLKFSYIGTQYRGLQKQIGNDFVRDTDSIQGALETALLTISPKSLIRPFIILSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKAL-----NAYLKISDTISILNLSIVDKQFHARFS 106 D+GVHAL H +L ++ + + + K I +L + + FHAR+ Sbjct: 61 DAGVHALCNTGHVELENKYGQIYDTSRIKQYVNRYFTKCGHNIRLLECIPITQDFHARYC 120 Query: 107 AIRRSYLYRIITRQAPLALEK------GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 R+Y+YR + + L + D + + + +G DFTTF + Sbjct: 121 VKSRTYIYRFMIPKVDEEHRIPLVEGIHTFHLRTYNFDIDRTKRGTKLFMGIKDFTTFSA 180 Query: 161 IHCQASSPIRTIDHFDVN--------------SFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + ARSFL+ QIR VG+L Sbjct: 181 KDEGKRNIRYVRSLHSFTLEETQPLMPFDPLSKHFTYWNFICSARSFLYNQIRRMVGALF 240 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +G GK T D+ LQ P APP GL+ +VEY Sbjct: 241 ALGLGKITEKDIIVMLQVPSHYNWNPHATCAPPHGLHLLNVEY 283 >gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM 11571] Length = 261 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 97/246 (39%), Gaps = 28/246 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA---IFLVTG-EIVVVHGAGRTDSGVHA 57 +R ++ Y G+ ++G Q+Q +++G A + L + +GRTD+GVHA Sbjct: 1 MRIAFLVSYIGTDFYGSQQQPGIRTVEGEFIGACIDLGLFSDWRDARFQFSGRTDAGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 Q+ FD A+N L I + V + F+ RF R Y Y Sbjct: 61 RSQICAFDTDYP---ERAVSAINRKL--PGDIRCRGWAGVPEGFNPRFEVSERIYRYFFP 115 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 +LD M +AA++L G HDF R + +P R I ++ Sbjct: 116 DG----------------NLDWGKMSLAAEYLPGVHDF--SRFARVEGKNPERKIFLAEI 157 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 I + SFL +R +L LVG G + + AL D P APPE Sbjct: 158 IPDKEGIIFEIRGESFLWNMVRCISHALWLVGSGSESPEVISAALSNTDGPRF-PAAPPE 216 Query: 238 GLYFDS 243 GL Sbjct: 217 GLVLWD 222 >gi|148273765|ref|YP_001223326.1| tRNA pseudouridine synthase A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831695|emb|CAN02664.1| putative tRNA pseudouridine synthase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 334 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 32/277 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---TGEIVVVHGAGRTDSGVHAL 58 R + I Y+G+G+ GW +Q ++QG++E A+ + T + AGRTD+GVHA Sbjct: 12 TRLRLDIAYDGTGFAGWAKQPGLRTVQGALEDALAQLLARTPPAPTLVVAGRTDAGVHAT 71 Query: 59 RQVAHFDLVREWV----------------------------PVILCKALNAYLKISDTIS 90 QVAH DL E + L + LN L + Sbjct: 72 GQVAHLDLTDEQIASLDRPPRGRAAAADAGEGAHVPSVDRAAAALARRLNGVLGARSDVV 131 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL-ALEKGRAWLIPKSLDCENMRIAAQHL 149 +L + F ARFSA R+Y YRI P L++ R +P +LD ++ AA L Sbjct: 132 VLACAPAPDGFDARFSATWRAYRYRISDVDGPRDPLQRHRTVELPVALDAAVLQEAADAL 191 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 +G HDF + AS+ + + +E V A +F H+ +R+ VG+ Sbjct: 192 LGLHDFAAYCKPREGASTIRTLQELTWTRASDGALEATVRADAFCHSMVRALVGACVAAA 251 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+ T L + L+ ++R + P GL + V Y Sbjct: 252 SGRVGVTRLRELLELRERTSEFTVMPARGLVLERVGY 288 >gi|119477629|ref|ZP_01617779.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] gi|119449132|gb|EAW30372.1| hypothetical protein GP2143_09210 [marine gamma proteobacterium HTCC2143] Length = 261 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 15/259 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFLVTG-EIVVVHGAGRTDS 53 M + + I Y G+ YFGWQ Q +I+G+I KA+ ++ + + A RTD Sbjct: 1 MHYFRVTIAYKGTHYFGWQAQSKDTLKEEYPTIEGTILKALKKMSNYQHCTISAASRTDG 60 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVHA Q+A L + L LN+ L + I S + Q + + Y Sbjct: 61 GVHAQGQLAKISLSIDISADHLLLGLNSALPLDIRILECASSTKNFQPNVSSVSKEYHYY 120 Query: 114 YRI--ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + A + + +D +R A Q VGRHDF F +S +R Sbjct: 121 FTASKTDNVAISEISLRLSTHDDGPIDMALLRTACQLFVGRHDFYNFSVRDLNNASSVRQ 180 Query: 172 IDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 I + D+ + ++++ FL IR +G+L +G G+ T D+ LQ Q Sbjct: 181 ISYCDILQANFSPLVDEVYYLKIIGDGFLKYMIRYVMGALIELGKGRITLEDIAFYLQHQ 240 Query: 226 DRKECGPLAPPEGLYFDSV 244 + A +GL+ + Sbjct: 241 QDDKLSAKAKAKGLHLIKI 259 >gi|326671566|ref|XP_683563.5| PREDICTED: tRNA pseudouridine synthase-like 1-like [Danio rerio] Length = 291 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 80/274 (29%), Positives = 120/274 (43%), Gaps = 32/274 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGS---IEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y GS Y G + ++QG +E A+ + V V + RTD+GVHAL Sbjct: 7 RYLIFFQYTGSKYSGVMKAPAHQAVQGVGNHLENAVRKLKPVNEVCVSISSRTDTGVHAL 66 Query: 59 RQVAHFDLVREWVPVILCK-----ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R L + ALN LK + I I V FHAR+ A R+Y+ Sbjct: 67 CNSAHVDIQRRADKPPLSEQSLLEALNFQLKE-EPIRITRAYRVHSDFHARYQAQSRTYV 125 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFR--SIHCQAS 166 YR+ L + L+ + MR A+ L+G HDF+TFR S Sbjct: 126 YRLALGCQHHTLMPLTEKDLCWALRDTRLNIDAMREASALLLGTHDFSTFRALSSDAPFK 185 Query: 167 SPIRT-----------IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 P++T E+ +RSFL+ Q+R G L +G G+ + Sbjct: 186 CPVKTLDLAQLEPGESFSQRHFQRDIQFWELTFKSRSFLYRQVRRMTGVLVAIGQGRLSV 245 Query: 216 TDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 + ++ L+A+D P AP GL+ +V+Y Sbjct: 246 SKIQDLLEARD-SLAFPNNLTAPAHGLFLTNVQY 278 >gi|224373193|ref|YP_002607565.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] gi|223588941|gb|ACM92677.1| tRNA pseudouridine synthase A [Nautilia profundicola AmH] Length = 223 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 92/229 (40%), Gaps = 6/229 (2%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK 77 Q+Q + ++QGSIE A+ + V AGRTD GVHAL QV F L W L Sbjct: 1 MQKQPDKITVQGSIENALKRL-NINSDVLHAGRTDRGVHALNQVVSFKLPSFWNQNKLLT 59 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 LN L + I D Y+ P + Sbjct: 60 ELNKILHPNIHIKKFYNVNDDFNPRFDAKKRSYRYIL----NPNFNPFSANYTTYYPHKI 115 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 + ++ A + G HDF F ++ IR I DV + N I++V FL Q Sbjct: 116 NISLLKKALKEFEGIHDFEYFAKTGSDVNNYIREIYKTDVYKYKNFTVIKIVGNGFLRAQ 175 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR V + + + K T DL+K L ++ LAPP GLY D + Y Sbjct: 176 IRLIVDFVLKINENKLTVQDLQKQL-SKQELISKHLAPPNGLYLDRIWY 223 >gi|323454991|gb|EGB10860.1| hypothetical protein AURANDRAFT_58785 [Aureococcus anophagefferens] Length = 305 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 97/270 (35%), Gaps = 25/270 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALR 59 RY + + Y+G+ + GWQ Q G ++QG + A+ G + GA RTD+GVHA Sbjct: 33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARG 92 Query: 60 QVAHFDLVREW----VPVILCKALNAYLKISDTISILNLSIVDKQFHARF---------- 105 Q AH DL +L +N L + L + K + AR Sbjct: 93 QCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANA 152 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF------- 158 + R +Y A R + + +D + A VG HDF F Sbjct: 153 AGKRYAYRLTARRGSADPLGRLYRGHVAYRDVDFGRLDDALSCFVGEHDFAAFANNAPGL 212 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 S+ ++ G + L+ +R+ VG+ V DG + Sbjct: 213 DPSGAARSTTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAI 272 Query: 219 EKALQAQDRKECGP--LAPPEGLYFDSVEY 246 L R+ P AP GL + V Y Sbjct: 273 PALLAPGARRADNPAKAAPACGLCLEEVYY 302 >gi|261839825|gb|ACX99590.1| pseudo uridylate synthase I [Helicobacter pylori 52] Length = 242 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAK----LFYHLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNAKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Haloterrigena turkmenica DSM 5511] Length = 295 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 98/264 (37%), Gaps = 28/264 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 M I Y+G+GY G+QRQ + +++ +I A+ + AGRTD+G Sbjct: 1 MPTRAFRIAYDGTGYHGFQRQPDVPTVEDAIFDALRDLEVLAADADRPDGYAAAGRTDAG 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V AL Q + + +ALN L I + +FHA A RR Y Y Sbjct: 61 VSALAQTVALEAPDW----LTPRALNGEL--PADIRAWAAADAPPEFHATHHAERREYAY 114 Query: 115 RIITRQAPLALEKG----------RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + A R +++D + R A + L G HDF Sbjct: 115 HLYAPPADSRRRDRAAPVSDRAGTRGSPGQRAVDDDRFRAACEALSGSHDFHNLTPDDRN 174 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + G+ + + V A F+ +R V + VG G +++A Sbjct: 175 TER----SPTLEAIRDGDFLVVTVTAGGFVRELVRRLVSLARAVGTGDAPLEKIDRAFDP 230 Query: 225 QDRK--ECGPLAPPEGLYFDSVEY 246 + E APPE L +V+Y Sbjct: 231 EPLPGHEGVAPAPPEPLVLTAVDY 254 >gi|307110841|gb|EFN59076.1| hypothetical protein CHLNCDRAFT_19189 [Chlorella variabilis] Length = 300 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 113/265 (42%), Gaps = 23/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFLVTGE---IVVVHGAGRTDSG 54 Y +++Y+G+ Y+G+Q Q ++Q +E+A+ TG+ + V AGRTD+G Sbjct: 4 YAAVLQYDGTAYWGFQLQPAPQGRRAKPTVQLRVEQALCRATGQGRQALRVQAAGRTDAG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF-SAIRRSYL 113 VHA QV F R L +ALNA + I + + V ++ R+ S +Y Sbjct: 64 VHARGQVVQFCCARRQGAAPLLRALNAL--MPPDIRAVAVQEVPLDWNVRYASRKTYAYD 121 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ--ASSPIRT 171 + P P+ L + M AA VG HDF+ F ++ SP++T Sbjct: 122 LHLDPVADPFLHRWRCHPRRPERLRLDAMADAAALFVGTHDFSRFANLGPDATRKSPVKT 181 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + + + V FL+ Q+R G+L VG G + D+ AL +R Sbjct: 182 VLSYRLLPLEGGARLEVTGTGFLYKQVRHMTGALLAVGGGSLGADDIAAALAGGERARSA 241 Query: 232 P---------LAPPEGLYFDSVEYS 247 +A GL V Y+ Sbjct: 242 AQRNAFRGWQVAEARGLCLQQVVYA 266 >gi|328783921|ref|XP_001121186.2| PREDICTED: tRNA pseudouridine synthase-like 1-like [Apis mellifera] Length = 313 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 39/285 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGEIVV---VHGAG 49 M RY + Y G+ Y G Q+ ++ +IQG++E A + + + + + Sbjct: 1 MTRYLIKFSYLGTQYRGMQKNVIQTENVIRDIDTIQGALETAFTTLIPKCIEWPKITCSS 60 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC----KALNA-YLKISDTISILNLSIVDKQFHAR 104 RTD GVH++ +AH D+ ++ + K +N + I +L V K FH R Sbjct: 61 RTDIGVHSMCNLAHIDIKNKYDSIYYPNDTLKYVNRYFFDCHHNIRLLEFIPVKKTFHVR 120 Query: 105 FSAIRRSYLYRIITRQAPLALE------KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 R+YLYR + + + D E ++ A Q +G DF TF Sbjct: 121 KFIHSRTYLYRFSVTKNKDEHRIPITEINRCFHIRSDTFDLERIKRATQLFIGTKDFRTF 180 Query: 159 --RSIHCQASSPIRTIDHFDVN------------SFGNLIEIRVVARSFLHTQIRSFVGS 204 + + + + +R ++ + I +R FL+ Q+R VG+ Sbjct: 181 SAKIVGNKPINYVRNLNSLTIEKGYPLMPNDPLSQNFEYWNIICSSRGFLYKQVRRIVGA 240 Query: 205 LKLVGDGKWTSTDLEKALQAQ---DRKECGPLAPPEGLYFDSVEY 246 L +G GK T D+ LQ + AP GLY +VEY Sbjct: 241 LFALGSGKITEKDITVMLQVPGCHNYLSQIETAPAYGLYLMNVEY 285 >gi|149193965|ref|ZP_01871063.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] gi|149135918|gb|EDM24396.1| Pseudouridylate synthase [Caminibacter mediatlanticus TB-2] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 18 WQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK 77 Q+Q N +IQG IE A+ + + V AGRTD GVHAL QV F + W L Sbjct: 1 MQKQPNKKTIQGEIELALNKLNINSI-VQHAGRTDKGVHALNQVISFTIPNFWDLNKLQT 59 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 +LN I I I + + F+ RF+A +RSY Y I +P + K + Sbjct: 60 SLNK--IIHPYIHIKKIKFIKNDFNPRFNAKKRSYRYIISPIFSPHKAD--YETYYDKKI 115 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 + E ++ A + G +DF F + ++ IRTI D+ + N + ++++ FL Q Sbjct: 116 NIELLKKAIKKFEGTYDFEYFAKTGSEVNNYIRTIYKTDIIEYKNKVILKIIGNGFLRGQ 175 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR L ++ + K T DL+K L +D+ LAPP GLY + + Y Sbjct: 176 IRIITNFLLMINENKLTIDDLQKQLN-KDQLFTKHLAPPNGLYLERIWY 223 >gi|157164133|ref|YP_001466582.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] gi|112800733|gb|EAT98077.1| tRNA pseudouridine synthase A [Campylobacter concisus 13826] Length = 243 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 97/245 (39%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q Q + + ++ +E+A+ V G V + RTD VHA Q Sbjct: 1 MKIQLIYSYDGSKFQGSQTQPHENGVEDELERALAHV-GIFERVVSSSRTDKSVHANNQS 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + + L + +VD+ F ARF A+ RSY Y I Sbjct: 60 SSVICGDHFTNLERLRDLINHHAHPSIHIKRIN-LVDESFQARFDAVARSYRYVI--DHG 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + D E ++ +G HDF+ + SP+R I ++ Sbjct: 117 KFDVFSSNYKVFLPKFDIEKANEILRNFIGEHDFSAYMKTGSDTKSPVREIYKAFCYTYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I A FL Q+R V +L K ++ +L AP EGLY Sbjct: 177 EQTIIVFKANGFLRGQVRLMVANLLKALKQKDGGKLIKASLNGHP-ALTRIPAPAEGLYL 235 Query: 242 DSVEY 246 + V Y Sbjct: 236 NRVFY 240 >gi|55379749|ref|YP_137599.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] gi|62901222|sp|Q5UXW0|TRUA_HALMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|55232474|gb|AAV47893.1| tRNA pseudouridine synthase A [Haloarcula marismortui ATCC 43049] Length = 275 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 91/253 (35%), Gaps = 26/253 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT------GEIVVVHGAGRTDSGV 55 +R + Y+G Y G+QRQ + +++G + A+ + G AGRTD+GV Sbjct: 1 MR-AYRVAYDGQPYHGFQRQPDVDTVEGRLRSALVRLGVCERGEGLPDRYAAAGRTDAGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A Q FD P L + + + + V + FHA A R+Y Y Sbjct: 60 SARTQTVAFDAPAWLSPAAFNGEL------PNDVRVWASADVPEDFHATHDAAERTYTYY 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + E + +D A L G HDF + Sbjct: 114 LYAPADADRPE-------HEPVDDGRWADAVDALAGTHDFHNLTTDETGTER----TVAI 162 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGPL 233 D G + +++ A F +R V V DG + +++ L + + P Sbjct: 163 DWTRDGQFLVVQLTAGGFCRQLVRRLVSLAAAVADGSAPLSKVDRILSPEPVSGPDGVPP 222 Query: 234 APPEGLYFDSVEY 246 APPE L V Y Sbjct: 223 APPEPLVLTDVRY 235 >gi|310287995|ref|YP_003939254.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] gi|309251932|gb|ADO53680.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum S17] Length = 298 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 94/279 (33%), Gaps = 38/279 (13%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSGVHA 57 + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Sbjct: 2 RIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHA 61 Query: 58 LRQVAHFDLVREWVPVIL-----------CKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV H D+ E + + L L TI + ++ Sbjct: 62 SHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSAL 121 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD------------ 154 Y + L L AA + Sbjct: 122 ERTYVYRVADRASEVDPRLRGFVLHLDADLDVVAMNEAAAMTIGLHDFGSFATPNPGGTT 181 Query: 155 ------FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 R + + +L+ +VA +F +RS VG V Sbjct: 182 IREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQV 241 Query: 209 GDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 G GK ++ + + R+ GP+AP +GL + V Y Sbjct: 242 GMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAY 279 >gi|119963259|ref|YP_948625.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] gi|119950118|gb|ABM09029.1| tRNA pseudouridine synthase A [Arthrobacter aurescens TC1] Length = 296 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 108/261 (41%), Gaps = 17/261 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 R + + Y+G + GW Q ++QGS+E+A+ L+ V V AGRTD+GVHA QV Sbjct: 18 RVRLDLSYDGGPFSGWALQPGLRTVQGSLEEALALLLQRPVRVTVAGRTDAGVHARGQVV 77 Query: 63 HFDLVREWVPVILC-----------KALNAYLKISDTISILNLSIV-----DKQFHARFS 106 H DL + + L L ++ + + F ARFS Sbjct: 78 HLDLTEAEWLSLPRGHELDPAVALLRRLRGALSRILGDLTGSIEVHDAGLAPEGFDARFS 137 Query: 107 AIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 A+ R Y YRI + + +G L+ E M A L+G DF ++ A Sbjct: 138 ALWRRYSYRIADGPERWDPVLRGITLWHKAPLNVELMNEGAFALLGLQDFRSYCKPREGA 197 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ ++I V A +F H +RS VGS VG+G T L L + Sbjct: 198 TTIRELQQFSFDRGSDDVIVATVQADAFCHNMVRSLVGSALRVGEGLETPGWLHSRLLER 257 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R LA P L + V Y Sbjct: 258 KRDAKSVLAAPHPLVLEEVAY 278 >gi|224283738|ref|ZP_03647060.1| tRNA pseudouridine synthase A [Bifidobacterium bifidum NCIMB 41171] Length = 298 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 38/279 (13%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------EIVVVHGAGRTDSGVHA 57 + + Y+G G+FGW +Q ++QG IE+ + +T E + + AGRTD+GVHA Sbjct: 2 RIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHA 61 Query: 58 LRQVAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAI 108 QV H D+ E + + AL L+ I+I ++++ F ARFSA+ Sbjct: 62 SHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSAL 121 Query: 109 RRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---- 163 R+Y+YR+ R + +G + LD M AA +G HDF +F + + Sbjct: 122 ERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPGGTT 181 Query: 164 ----QASSPIRTIDHF-----------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + + R + +L+ +VA +F +RS VG V Sbjct: 182 IREVKTAYWRRIPTRPLVVDGVGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQV 241 Query: 209 GDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 G GK ++ + + R+ GP+AP +GL + V Y Sbjct: 242 GMGKRSTDWFREKMAVPLREGSTGPIAP-QGLTLEHVAY 279 >gi|302818580|ref|XP_002990963.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] gi|300141294|gb|EFJ08007.1| hypothetical protein SELMODRAFT_132613 [Selaginella moellendorffii] Length = 289 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 17/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------------EIVVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + + +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F K A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNS--AMPTILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y+Y ++ ++ + + ++L+ ++ A + ++ + C Sbjct: 132 RRYIYIFP-LRSRDEIDVSKVATLLRALEGHSLSYAIFARDTKIARSSGPATVCTLYHAR 190 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + N++ + +VA FL +R V + L ++ DR+ Sbjct: 191 AALAKLPFPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRA 250 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 251 SAPPAPAHGLCLAEVGY 267 >gi|224370989|ref|YP_002605153.1| TruA2 [Desulfobacterium autotrophicum HRM2] gi|223693706|gb|ACN16989.1| TruA2 [Desulfobacterium autotrophicum HRM2] Length = 257 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 98/253 (38%), Gaps = 12/253 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GW +Q +++ +EK + + G + G+ RTD+ V A Sbjct: 6 YLIHIQYLGFRYHGWLKQPGLKTVEAMVEKTVAFILGHSDFKILGSSRTDAMVSANHSAF 65 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + L K N L + I ++ VD+ F + ++Y+Y + Sbjct: 66 ELFVHEPLNVEQLVKDFNQNL--PNDIRVIKAQGVDRNFSIINAPRTKAYIYLFAFGEKC 123 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 LD + M+ A GRH+F ++ + ++ R + + Sbjct: 124 HPFCAPLISSFCHWLDIDLMKQGALLFQGRHNFRSYCTKPGTRTTFKREVLVSKIEENRI 183 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + ++ F+ Q+R +G L +G G+ D++ +L+ + Sbjct: 184 FKANFFPAESYAYHIHSKGFMRYQVRLIMGQLLSLGRGEIGLEDIKVSLKGMSHLPLRHI 243 Query: 234 APPEGLYFDSVEY 246 AP GL + +E+ Sbjct: 244 APSSGLMLNKIEF 256 >gi|306823540|ref|ZP_07456915.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] gi|304553247|gb|EFM41159.1| tRNA pseudouridine synthase A [Bifidobacterium dentium ATCC 27679] Length = 296 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 111/278 (39%), Gaps = 40/278 (14%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ + + AL L+ + I+I ++ + F ARFSA+ R+ Sbjct: 61 VCHLDVSETILARCVGHMDVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERT 120 Query: 112 YLYRIITRQAPLALEKG-RAWLIPKSLDCENMRIAAQHLV-------------------- 150 Y+YRI R + + + LD E M AA + Sbjct: 121 YVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIRE 180 Query: 151 -GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + + + L +VA +F +RS V VG Sbjct: 181 VKTAYWRRIPQRPLIDGEMTMGERYHTPSMESGLACFTIVADAFARNMVRSLVNGCVQVG 240 Query: 210 DGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 GK + + R+ GP+AP +GL + +EY Sbjct: 241 IGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEY 277 >gi|58696853|ref|ZP_00372372.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] gi|58536935|gb|EAL60107.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila simulans] Length = 188 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 92/183 (50%), Positives = 123/183 (67%), Gaps = 2/183 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AP ALE G W + LD MR AA+HL+G+HD ++FRS C A++PIRTID D+ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQN 179 Query: 181 GNL 183 GN Sbjct: 180 GNH 182 >gi|163755611|ref|ZP_02162730.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] gi|161324524|gb|EDP95854.1| tRNA pseudouridine synthase A [Kordia algicida OT-1] Length = 262 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 17/258 (6%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGV 55 M R Y + ++Y G Y GWQ+Q + +++Q E+ + V G + +GRTD+ V Sbjct: 1 MKRNRKYYLITLQYLGFRYHGWQKQPDVNTVQRMTERTLAYVFGHKNFKLLASGRTDAKV 60 Query: 56 HALRQVAHFDLVREWVPVILCKAL-NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A L E + + L N L I L ++ +++F+ + Y+Y Sbjct: 61 SANEIAIELFLDNETLNIPEFLPLFNKNL--PQDIRALAITETNEKFNIIQHPKVKEYIY 118 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + LD E M+ A+ G H T+ + + I+ Sbjct: 119 LFAFGEKYHPFAAPYMTNVLGDLDVELMKKGAKLFEGNHYLKTYCYKPTEHTILEGEIEL 178 Query: 175 FDVNSFGNL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 ++ +RV F QIR +G+L L+G + ++++L Sbjct: 179 CEITENDLYTASFFPEKSYVLRVQGAGFKRHQIRMMMGTLILLGRHELDLDFIKRSLLPN 238 Query: 226 DRKECGPLAPPEGLYFDS 243 E +AP GL + Sbjct: 239 STLEVNYIAPASGLMLNK 256 >gi|213582886|ref|ZP_03364712.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 214 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 2/198 (1%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GRTD+GVH QV HF+ +NA L I++ + V FHARFSA Sbjct: 1 GRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSAT 58 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R Y Y I + A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P Sbjct: 59 ARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 118 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 R + H +V G + + + A +F+H +R+ VGSL VG + + + L A+DR Sbjct: 119 WRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHNQPESWIAELLAARDRT 178 Query: 229 ECGPLAPPEGLYFDSVEY 246 A EGLY +V+Y Sbjct: 179 LAAATAKAEGLYLVAVDY 196 >gi|283455394|ref|YP_003359958.1| 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] gi|283102028|gb|ADB09134.1| rplQ 50S ribosomal protein L17 [Bifidobacterium dentium Bd1] Length = 296 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 111/278 (39%), Gaps = 40/278 (14%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGVHALRQ 60 + Y+G G+FGW +Q + ++QG IE+ + V GE + + AGRTD+GVHA Q Sbjct: 1 MAYDGGGFFGWAKQPDRRTVQGEIERILHTVLRVPVDDAGEPLRLTVAGRTDTGVHASHQ 60 Query: 61 VAHFDLVREWVPVILCK-------ALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRS 111 V H D+ + + AL L+ + I+I ++ + F ARFSA+ R+ Sbjct: 61 VCHLDISETILARCVGHMNVPPVVALTRRLQRMLPNDITIHGINEAPQGFDARFSALERT 120 Query: 112 YLYRIITRQAPLALEKG-RAWLIPKSLDCENMRIAAQHLV-------------------- 150 Y+YRI R + + + LD E M AA + Sbjct: 121 YVYRIADRSSEIDPRMRGFVLHVDDDLDLETMNQAAAMTIGLHDFGSFATPNPGGTTIRE 180 Query: 151 -GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + + + L +VA +F +RS V VG Sbjct: 181 VKTAYWRRIPQRPLVDGEMTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVG 240 Query: 210 DGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 GK + + R+ GP+AP +GL + +EY Sbjct: 241 IGKRSLDWFADKMATPLREGSTGPIAP-QGLTLEHIEY 277 >gi|58699455|ref|ZP_00374196.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534027|gb|EAL58285.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 201 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 123/202 (60%), Gaps = 1/202 (0%) Query: 45 VHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 ++ GRTD+GVHAL QVAHFD+ +E + A+N +LK S I +LN +VD FHAR Sbjct: 1 MYCGGRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHAR 59 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 FSA +R Y YRI+ R AP ALE G W + LD MR AA+HL+G+HD ++FRS C Sbjct: 60 FSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCH 119 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 A++PIRTID D+ GN I I++ A SFLH Q+R G+L G + ++ L Sbjct: 120 AANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQ 179 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 R G APP GLY ++Y Sbjct: 180 CKRSAAGVTAPPFGLYLVKIDY 201 >gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum] Length = 491 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 57/266 (21%), Positives = 96/266 (36%), Gaps = 24/266 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVV------VHGAGRTD 52 RY M+I Y G Y G Q QK+ +I+G + A+ +T E V+ A RTD Sbjct: 62 TRYAMLIAYQGKNYCGMQVQKDAPTIEGCLLNAMQKYGLITDEEVIKPNLFFFQRAARTD 121 Query: 53 SGVHALRQVAHFDLVREWV-PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A+RQ+ L + P + LN L + + + A S Sbjct: 122 RAVSAVRQMCSMMLNFDEQLPKTVPDELNKLLPEDIRVMGIRRATRTFNAQKDCDARTYS 181 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y L + ++++ N + + + F S R Sbjct: 182 YTLPTYAFAKVDELTSSAYRITDETINEINALLQI-FVGTHNFFNYTSKREFSDRSCFRY 240 Query: 172 IDHFDV-----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I F N + I + +SF+ QIR +G + + G +D+++ Sbjct: 241 IIDFKCGAKFLFKNELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLLYKSDIQR 300 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ + P AP GL + V Y Sbjct: 301 SFESA--RMDVPKAPGLGLLLEKVHY 324 >gi|294621109|ref|ZP_06700300.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599345|gb|EFF30371.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 165 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 3/160 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M+RY II Y+G+ + G+Q+Q NG ++Q +EK + + G+ + V G+GRTD+GVHA+ Sbjct: 1 MVRYKAIIAYDGTNFNGFQKQPNGRTVQEEVEKTLQKMANGKEITVFGSGRTDAGVHAIG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD E + AL+ + + I++ + IV + FHAR+ ++Y +R+ Sbjct: 61 QVIHFDYPEERPLERMRFALDT--QSPEDIAVRQVEIVSEDFHARYLVKEKTYQFRVDIG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + + A P LD E ++ A L+G HDFT+F Sbjct: 119 KPRSPFRRHYASYFPYPLDLEKIQRALPDLLGTHDFTSFC 158 >gi|302802211|ref|XP_002982861.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] gi|300149451|gb|EFJ16106.1| hypothetical protein SELMODRAFT_117099 [Selaginella moellendorffii] Length = 289 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 17/257 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-------------EIVVVHGAGR 50 + +++ Y+G+ + GWQ+Q ++Q +EK + + +V AGR Sbjct: 14 FKIVLSYSGTAFAGWQKQPGFLTVQSVLEKQLGRFVDGKRASNLEKQGKIKEALVSVAGR 73 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GVHA QV F K A+N+ + + ++ S V++ FH FSA Sbjct: 74 TDKGVHACGQVCSFYTWMRECKEEDVKSAVNS--AMPTILRAVSASEVNRDFHPIFSAKW 131 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y+Y ++ ++ + + + L+ ++ A + ++ + C Sbjct: 132 RRYIYIFP-LRSRDEIDVSKVATLLRGLEGHSLSYAIFARDTKIARSSGPATVCTLYHAR 190 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + V + N++ + +VA FL +R V + L ++ DR+ Sbjct: 191 AALAKLPVPNEENVMVVELVADRFLRKMVRVLVSTAIKEAFAGANDDALVALMEETDRRA 250 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL V Y Sbjct: 251 SAPPAPAHGLCLAEVGY 267 >gi|163788523|ref|ZP_02182969.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] gi|159876843|gb|EDP70901.1| tRNA pseudouridine synthase A [Flavobacteriales bacterium ALC-1] Length = 261 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 10/253 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G + GWQ+Q + +I I++ + + + GAGRTD+ V A Sbjct: 8 YLIKIQYLGYRFHGWQKQPDVKTIHLMIDRTLKFILKDVRFKTLGAGRTDAMVSANEAAL 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + E + + I L++S VDK F+ + + Y Y + Sbjct: 68 ELFIYNEPITDFEAFLKLFNHNLPQDIRALSISEVDKAFNIIQDSKIKEYHYVFSEGEKN 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD------ 176 I + LD E M+ A+ G H+F T+ RTI+ + Sbjct: 128 HPFCAPILTTILEPLDVELMKKGAKLFEGSHNFKTYCYRATDKGEYFRTIESSEIIDNSL 187 Query: 177 ---VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 +V + F+ QIR G L +G G+ T +E L+ + + Sbjct: 188 YTANFFPEQSYVFKVRGKGFMRNQIRLMFGCLIKLGRGEVTLQYIENTLKHDSTEVMDYI 247 Query: 234 APPEGLYFDSVEY 246 AP GL S+++ Sbjct: 248 APASGLILHSIDF 260 >gi|312150754|gb|ADQ31889.1| pseudouridylate synthase-like 1 [synthetic construct] Length = 303 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 120/276 (43%), Gaps = 36/276 (13%) Query: 3 RYCMIIEYNGSGYFGW------QRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + +Y G+ + G QR +Q +E+A + E V + RTD+GV Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQR---AVGVQNYLEEAAERLNSVEPVRFTISSRTDAGV 69 Query: 56 HALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ + P +L +ALN +L+ +L V FHAR +A R Sbjct: 70 HALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAI-RVLRAFRVPSDFHARHAATSR 128 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR+ T + LD M+ AAQHL+G HDF+ F+S Sbjct: 129 TYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPV 188 Query: 166 SSPIRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SP+RT+ + + + ++SFL+ Q+R L VG G Sbjct: 189 PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGA 248 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 249 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|23503259|ref|NP_699170.1| tRNA pseudouridine synthase-like 1 [Homo sapiens] gi|52783232|sp|Q8N0Z8|PUSL1_HUMAN RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|21706547|gb|AAH34304.1| Pseudouridylate synthase-like 1 [Homo sapiens] gi|22761287|dbj|BAC11527.1| unnamed protein product [Homo sapiens] gi|56204950|emb|CAI23172.1| pseudouridylate synthase-like 1 [Homo sapiens] gi|119576649|gb|EAW56245.1| pseudouridylate synthase-like 1 [Homo sapiens] Length = 303 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 80/276 (28%), Positives = 120/276 (43%), Gaps = 36/276 (13%) Query: 3 RYCMIIEYNGSGYFGW------QRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + +Y G+ + G QR +Q +E+A + E V + RTD+GV Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQR---AVGVQNYLEEAAERLNSVEPVRFTISSRTDAGV 69 Query: 56 HALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ + P +L +ALN +L+ +L V FHAR +A R Sbjct: 70 HALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAI-RVLRAFRVPSDFHARHAATSR 128 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR+ T + LD M+ AAQHL+G HDF+ F+S Sbjct: 129 TYLYRLATGCHRRDELPVFERNLCWTLPADCLDMVAMQEAAQHLLGTHDFSAFQSAGSPV 188 Query: 166 SSPIRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SP+RT+ + + + ++SFL+ Q+R L VG G Sbjct: 189 PSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGA 248 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K +AP GL+ SV Y Sbjct: 249 LAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVLY 284 >gi|290999771|ref|XP_002682453.1| predicted protein [Naegleria gruberi] gi|284096080|gb|EFC49709.1| predicted protein [Naegleria gruberi] Length = 377 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 114/304 (37%), Gaps = 61/304 (20%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 RY +I +Y G+ Y G+Q+Q N G++IQ IE ++ + + + G+ RTDSGVH Sbjct: 58 RYKLIFQYRGNNYDGYQKQNNKGEPRGNTIQKHIEGSLHKLFNTNDIYIVGSSRTDSGVH 117 Query: 57 ALRQVAHFDLVREWVPVILCK-------ALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 AL HFD+ E + LN YLK + I I + D FHAR Sbjct: 118 ALHNTCHFDVASEIIEKRENYTAKNVIFGLNFYLK-DEDIVICSCEKKDMNFHARHRVKE 176 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD----------------------------CEN 141 R Y YR++ L ++ + ++ Sbjct: 177 REYQYRVLLTGPKPDLAYKVPFIQDQYWIVNGAKYEQGGPTKQEISLDFRSLETYFRIDD 236 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQAS------------------SPIRTIDHFDVNSFGNL 183 +R A Q+ +G H+F F F S Sbjct: 237 VREACQYFIGTHNFNNFCKSDLPERVSRIKTINSVTVEEIDLQQDQTISPLFFSTSKCKE 296 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 I + SFLH Q+R V +L VG GK T L +Q + R APP GL+ Sbjct: 297 IRFTIRGNSFLHNQVRIMVDALVKVGIGKMNPTYLRALVQNPNMRYPEKGSAPPHGLFLT 356 Query: 243 SVEY 246 +V Y Sbjct: 357 NVVY 360 >gi|15644989|ref|NP_207159.1| tRNA pseudouridine synthase A [Helicobacter pylori 26695] gi|2499078|sp|P56144|TRUA_HELPY RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|2313463|gb|AAD07429.1| pseudouridylate synthase I (hisT) [Helicobacter pylori 26695] Length = 242 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEDALN-ALGIKSVVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|66811154|ref|XP_639285.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] gi|60467961|gb|EAL65974.1| hypothetical protein DDB_G0283061 [Dictyostelium discoideum AX4] Length = 343 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 81/301 (26%), Positives = 129/301 (42%), Gaps = 57/301 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 RY +I EY G + G+QR K +Q +E ++ + G + + G+ RTD GV A Sbjct: 3 PRYKIIYEYIGKSFTGFQRLKYPVVKLP-VQQVLEDSLEKIHGYKIPIVGSSRTDHGVSA 61 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV------------DKQFHARF 105 + QV+HFD+ + L + +++ I+ D +FH RF Sbjct: 62 VGQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCRF 121 Query: 106 SAIRRSYLYRIITRQAPLAL---EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 +A R+YLYR++ + R +L+ L+ + MR A++ +G HDF++FRS Sbjct: 122 NATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSAK 181 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRV---------------------------------- 188 C ++ PIR+I H + + Sbjct: 182 CSSTRPIRSISHIKIYDLPLPDIFQYNPSFQNISRSNTNYPIGDGEKNLDKKNTGLQYFG 241 Query: 189 ---VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 AR+FLH Q+R V SL VG+G+ + LE+ +DR P A PE L +V Sbjct: 242 IEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPLTLLTVS 301 Query: 246 Y 246 Y Sbjct: 302 Y 302 >gi|118101049|ref|XP_417580.2| PREDICTED: similar to MGC80334 protein [Gallus gallus] Length = 291 Score = 116 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 86/276 (31%), Positives = 128/276 (46%), Gaps = 31/276 (11%) Query: 2 IRYCMIIEYNGSGYFG-WQRQKN--GSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G Q G +Q +EKA + + H + RTDSGVHA Sbjct: 6 TRYLVFFQYWGTKYSGVMQTSAEQSGIGVQNYLEKAAQNLKPVVPIKFHISSRTDSGVHA 65 Query: 58 LRQVAHFDLVREWVPVILCKA-----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 L AH D+ R + LN +LK + I IL+ V FHARFSA+ R+Y Sbjct: 66 LCNSAHLDIQRAPGKPAFQERVLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRTY 124 Query: 113 LYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFR--SIHCQA 165 +YR++ + + L+ M+ AAQ L+G HDF+TF + Sbjct: 125 IYRLLMGCTHHSEIPVFERDLCWAPPGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETPF 184 Query: 166 SSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 SP++TI H E++ +RSFL+ Q+R VG+L VG GK Sbjct: 185 RSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKL 244 Query: 214 TSTDLEKALQAQDRKE--CGPLAPPEGLYFDSVEYS 247 +++ L+ +D + +AP GL+ SVEY+ Sbjct: 245 APHHIKELLEMKDARAFPAFAMAPSSGLFLKSVEYN 280 >gi|317180826|dbj|BAJ58612.1| tRNA pseudouridine synthase A [Helicobacter pylori F32] Length = 242 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFCTPKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|32266100|ref|NP_860132.1| tRNA pseudouridine synthase A [Helicobacter hepaticus ATCC 51449] gi|42559757|sp|Q7U328|TRUA_HELHP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|32262149|gb|AAP77198.1| tRNA pseudouridine synthase [Helicobacter hepaticus ATCC 51449] Length = 248 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 5/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 M Y +I Y+GS + G+ QK+ S+ G++++ V G + GAGRTD GVHA Sbjct: 1 MPTYKAVIAYDGSVFSGFALQKDKRLKSVLGTLKEGFARV-GIKSDIIGAGRTDKGVHAT 59 Query: 59 RQVAHFDLVRE-WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F V ++L L I+ S+ YR + Sbjct: 60 GQVICFQSAHFLDSQVQAIESLRFLLNAKLYPHIMVRSLHIVDDTFHPRFDALWRSYRFL 119 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + K D + A Q G+H+F F+ + IRTI Sbjct: 120 LSPTQPSPFAAPYVSYEKIGDETLFKNALQAFQGQHNFVFFKKNGSYTKNCIRTIFAIKH 179 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 ++ L + V FL Q+R VG+ + + L++ + Q + P++P Sbjct: 180 YTYKGLDIVYVRGNGFLRAQVRLMVGAALAYSRAELSFHSLQEQINGQKQHYTYPISP-N 238 Query: 238 GLYFDSVEY 246 GLY V Y Sbjct: 239 GLYLCEVGY 247 >gi|305666822|ref|YP_003863109.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] gi|88709046|gb|EAR01280.1| tRNA pseudouridine synthase A [Maribacter sp. HTCC2170] Length = 282 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 13/251 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q +++G I K + + + AGRTDS V AL Sbjct: 30 YVIKLQYLGFRFSGWQKQPGQKTVEGMITKTLKFILPNSEFKILSAGRTDSKVSALDAAF 89 Query: 63 HFDLVREWVPVILCKAL-NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + L N L I ++++ V++ F+ + Y+Y Sbjct: 90 ELFINEPLTDFEAFIGLFNKNL--PSDIRVMSIKEVNEDFNIIQDPKVKEYVYLFSYGSK 147 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + LD E M+ AA VG HD + + + RTI ++ Sbjct: 148 NHPYSSPFITNVLDELDLELMKKAASLYVGTHDLSVYTVKAQNNAHKKRTITSCEIIENK 207 Query: 182 NL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 L RV F+ QIR +G+L +G G+ D+E +L + E Sbjct: 208 ILQANFFPEKSYAFRVEGPGFMRYQIRMMMGALIQLGKGELLFADIENSLSNPESIELTY 267 Query: 233 LAPPEGLYFDS 243 +AP GL + Sbjct: 268 VAPGSGLLLNR 278 >gi|327288532|ref|XP_003228980.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Anolis carolinensis] Length = 293 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 82/274 (29%), Positives = 122/274 (44%), Gaps = 31/274 (11%) Query: 3 RYCMIIEYNGSGYFG-WQRQKNGSS--IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + +Y+G+ Y G + + ++ +Q +EKA + V + RTD+GVHAL Sbjct: 7 RYLISFQYSGTMYSGVMETPPHQATLGVQNYLEKAAEKLRPLVPVKFVISSRTDTGVHAL 66 Query: 59 RQVAHFDLVREWVPVILCK-----ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R + ALN LK + I +L V FHARFSA+ R+Y+ Sbjct: 67 CNTAHIDIERSGGKPPFSESVLVQALNRNLKH-EPIRVLAARRVSDTFHARFSALSRTYV 125 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFR--------- 159 YR++T + + + LD M+ AA LVG HDF+TFR Sbjct: 126 YRVVTGCSCPSDLPVFERNLCWVTQRGHLDLTAMQEAAGLLVGTHDFSTFRSASSELPAK 185 Query: 160 -SIHCQASSPIRTI----DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + IR H +S E+ +RSFL+ Q+R G L VG + Sbjct: 186 NPVKTIDQLEIRPSSGFLMHHVKSSDLKFWELEFTSRSFLYKQVRRMAGVLVAVGQHRLD 245 Query: 215 STDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 ++ L +D P +AP GL+ +VEY Sbjct: 246 PECVKTLLDIRDLMAYPPSTIAPACGLFLKNVEY 279 >gi|311258299|ref|XP_003127542.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Sus scrofa] Length = 306 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQ--RQK-NGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G R + +Q +E+A + V + RTD+GVHAL Sbjct: 13 RYLVYFQYLGTDFNGVAAVRGPQHAVGVQNYLEEAAERLNSVVPVKFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ + P +L +ALN +L+ +L V FHAR++A R+YL Sbjct: 73 SNAAHLDIQRRSGQPPFSPEVLTEALNTHLRHPAI-RVLQAFRVPSHFHARYAATSRTYL 131 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T LD M+ AAQHL+G HDF+ F+S A+SP Sbjct: 132 YRLATGCPRPDHLSVFERNRCWPLRADCLDVAAMQEAAQHLLGTHDFSAFQSTGSPATSP 191 Query: 169 IRTIDHFDVNSFG-------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ V+ + ++SFL+ Q+R L VG G T Sbjct: 192 VRTLRRASVSPEPSSPLVLPGESRGLRFWSLEFESQSFLYRQVRRMTAVLVAVGLGALTP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D + +AP GL+ SV Y Sbjct: 252 AQVKMILESRDPLGRHQSRVAPAHGLFLKSVLY 284 >gi|151554108|gb|AAI49177.1| PUSL1 protein [Bos taurus] Length = 312 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 120/273 (43%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + V + RTD+GVHAL Sbjct: 34 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 93 Query: 59 RQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ + P +L +ALN +LK +L V FHAR +AI R+YL Sbjct: 94 SNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHPAI-RVLQAFRVPSHFHARHAAISRTYL 152 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T LD M+ AAQHL+G HDF+ F+S ASSP Sbjct: 153 YRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSP 212 Query: 169 IRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ + + + ++SFL+ Q+R L VG G Sbjct: 213 VRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMP 272 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D K +AP GL+ SV Y Sbjct: 273 AQVKAILESRDPLGKHQSRVAPAHGLFLKSVLY 305 >gi|76637689|ref|XP_875031.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|297484219|ref|XP_002694181.1| PREDICTED: pseudouridylate synthase-like 1 [Bos taurus] gi|296479092|gb|DAA21207.1| pseudouridylate synthase-like 1 [Bos taurus] Length = 303 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 120/273 (43%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + +Q +E+A + V + RTD+GVHAL Sbjct: 9 RYLVYFQYLGTDFNGVAAVRGVQRAVGVQNYLEEAAERLNSVMPVKFTISSRTDAGVHAL 68 Query: 59 RQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ + P +L +ALN +LK +L V FHAR +AI R+YL Sbjct: 69 SNAAHLDIQRRSDLPPFSPEVLTEALNTHLKHPAI-RVLQAFRVPSHFHARHAAISRTYL 127 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T LD M+ AAQHL+G HDF+ F+S ASSP Sbjct: 128 YRLATGCPRPDRLPVFERNRCWALQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPASSP 187 Query: 169 IRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ + + + ++SFL+ Q+R L VG G Sbjct: 188 VRTLRRASVSPDPASPFVLPEESRQLQFWSMEFESQSFLYKQVRRMTAVLVAVGLGALMP 247 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L+++D K +AP GL+ SV Y Sbjct: 248 AQVKAILESRDPLGKHQSRVAPAHGLFLKSVLY 280 >gi|313682232|ref|YP_004059970.1| tRNA pseudouridine synthase a [Sulfuricurvum kujiense DSM 16994] gi|313155092|gb|ADR33770.1| tRNA pseudouridine synthase A [Sulfuricurvum kujiense DSM 16994] Length = 242 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 74/248 (29%), Positives = 102/248 (41%), Gaps = 8/248 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M R + + YNGS + G Q+Q N +++ G + + + +GRTD GVHA Sbjct: 1 MSRVKITLSYNGSAFMGSQQQPNTDNTVMGHLITVLHRL-KITATPKASGRTDRGVHATH 59 Query: 60 QVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV H DL W + + LN L S I + FHAR+SA RR Y Y I Sbjct: 60 QVIHVDLPDFWTDLHRLREMLNVQLPPSMRIQRIEFVED--DFHARYSAKRRVYRYVIKE 117 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + SL+ E + A VG HDF F+ R I Sbjct: 118 GLSNPFEDNF--ITFVPSLNREAICDAIGCFVGTHDFEFFKKSGNDLEHHTRIIYRAYAY 175 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 S+ I FL +QIR VG L + GK T L + + R +AP G Sbjct: 176 SYKGHFIIVFEGNGFLRSQIRLMVGFLLRISAGKATKEQLIEQINCVKRHTTD-IAPHNG 234 Query: 239 LYFDSVEY 246 LY ++Y Sbjct: 235 LYLTHIKY 242 >gi|118462566|ref|YP_883531.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] gi|254776828|ref|ZP_05218344.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. avium ATCC 25291] gi|118163853|gb|ABK64750.1| tRNA pseudouridine synthase A [Mycobacterium avium 104] Length = 251 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ V V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGP 62 Query: 79 ----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 L +L + + + Y L + P Sbjct: 63 LLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTA-PWGVLPQQARYVTAWP 121 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD E M A++ L+G HDF F A++ R + D G+LI RV A +F Sbjct: 122 RPLDVEAMAAASRDLLGLHDFAAFCRHRENATTI-RDLQRLDWTRDGDLIIARVSADAFC 180 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 181 WSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDY 232 >gi|217034467|ref|ZP_03439879.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] gi|216943069|gb|EEC22546.1| hypothetical protein HP9810_890g12 [Helicobacter pylori 98-10] Length = 242 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N S+Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLSVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFCAQKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGAMTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + GK T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLGKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|167948002|ref|ZP_02535076.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 201 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + +EY+GSG+ GWQ+Q + S+Q +E A+ V + V VH AGRTD+GVH QV Sbjct: 19 MKIALGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQV 78 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 HF+ E P N L + +S+ V FHARFSA R Y Y I+ R Sbjct: 79 VHFETTAERPPRAWVLGSNVNL--PNDVSVSWARQVADDFHARFSATGRHYRYLILNRGT 136 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 AL + RA LD M+ A + G Sbjct: 137 RSALWRNRATWHHHPLDEHRMQPAGTGIGGHPRL 170 >gi|41410333|ref|NP_963169.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. paratuberculosis K-10] gi|51316707|sp|Q73S41|TRUA_MYCPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|41399167|gb|AAS06785.1| TruA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 251 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ V V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGP 62 Query: 79 ----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 L +L + + + Y L + P Sbjct: 63 LLRRLGRFLPTDVRVVDITRAPAGFDARFSALRRHYVYRLSTA-PWGVLPQQARYVTAWP 121 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD E M A++ L+G HDF F A++ R + D G+LI RV A +F Sbjct: 122 RPLDVEAMAAASRDLLGLHDFAAFCRHRENATTI-RDLQRLDWTRDGDLITARVSADAFC 180 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +RS VG+L VG+ + + + L A +R AP GL V+Y Sbjct: 181 WSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDY 232 >gi|20094324|ref|NP_614171.1| TruD family pseudouridine synthase [Methanopyrus kandleri AV19] gi|30913397|sp|Q8TWZ3|TRUA_METKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|19887376|gb|AAM02101.1| Pseudouridylate synthase of the TruA family [Methanopyrus kandleri AV19] Length = 256 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 102/246 (41%), Gaps = 26/246 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+GS Y G+Q Q + +I+G++ KA+ + E+V A RTD+G HA QV Sbjct: 1 MRVALRVAYDGSRYHGFQYQPDVPTIEGALRKALSELGLELVGY--ASRTDAGAHARYQV 58 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + E + +NA L I ++ + V ++F R A+R+ Y Y + Sbjct: 59 VVVEGDPE---LAQPDPINARL--PKDIRVIAKTEVHEEFDPRRDALRKEYRYFLGPLNR 113 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 P A AA+ L G+HDF+ FR + + Sbjct: 114 PEAA-----------------ARAARKLEGKHDFSAFRREDGRNPIITVERCELVEITPN 156 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA-PPEGLY 240 +RVVA FL +R G + VG G D E L + P P EGL Sbjct: 157 AY-VLRVVAPRFLWEMVRRIAGFVWEVGHGLREEGDAEALLSGKFEPSKKPRCLPAEGLI 215 Query: 241 FDSVEY 246 +EY Sbjct: 216 LWHIEY 221 >gi|109947020|ref|YP_664248.1| tRNA pseudouridine synthase A [Helicobacter acinonychis str. Sheeba] gi|122973397|sp|Q17YM7|TRUA_HELAH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|109714241|emb|CAJ99249.1| pseudouridylate synthase I [Helicobacter acinonychis str. Sheeba] Length = 242 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q + +Q IE A+ + G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPDKLGVQDKIESALN-LLGIKSVVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSF----HAQKHWSADKLFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 L A SLD N + +G+HDF+ F+ A++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDSLNTA--LKQFIGKHDFSMFKKEGGAATNPKRIIFNAFAYKA 173 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIMQACVQYSLEKITLAEIKTQINNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVHY 242 >gi|99034196|ref|ZP_01314273.1| hypothetical protein Wendoof_01000930 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 166 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 84/164 (51%), Positives = 112/164 (68%), Gaps = 2/164 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE V ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSNFSGWQKQQHSANSIQEKIENAIFNFSGEKVTLYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 VAHFD+ +E+ + A+N +LK S I +LN +VD FHARFSA +R Y YRI+ R Sbjct: 61 VAHFDMEKEFELYRIRNAINYHLK-SIPIVVLNAEVVDDAFHARFSAKKRYYEYRIVNRY 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 AP ALE G W + LD MR AA+HL+G+HD ++FRS CQ Sbjct: 120 APAALETGYVWQVFSPLDVNIMREAAKHLLGKHDLSSFRSKDCQ 163 >gi|91217701|ref|ZP_01254658.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] gi|91184205|gb|EAS70591.1| tRNA pseudouridine synthase A [Psychroflexus torquis ATCC 700755] Length = 261 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G Y GWQ+Q + +++ + K + + + V AGRTD+ V A + Sbjct: 8 YLIQLQYLGFRYHGWQKQPDVLTVEHMLHKTLNFILENQRFKVLAAGRTDAMVSANQTYI 67 Query: 63 H-FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 F E + N L I L++ F+ + Y Y ++ Sbjct: 68 ELFIYEDELDLETFLEQFNKNL--PQDIRALSIEETTADFNIIQHPKIKEYFYFFCVKEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD----- 176 + + LD E M++ A+ G HDF +F + I+ + Sbjct: 126 MHPFCAPFMVNLQEDLDIELMKLGAKLFEGEHDFYSFTFRPNPETKTEGNIERCELTEND 185 Query: 177 ----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++VV F QIR +G+L +G K + +LEK + + + Sbjct: 186 IYTANFFPNQSFVLKVVGEGFKRQQIRLMMGALIDLGRHKISLEELEKTIDGSHKIKLEH 245 Query: 233 LAPPEGLYFDSV 244 +A GL + V Sbjct: 246 IAQASGLILNKV 257 >gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium M1] Length = 290 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 16/254 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV------VVHGAGRTDSG 54 M R + I Y G+ + G+QRQ + +++ + + + E + AGRTD+G Sbjct: 1 MKRTALKIAYIGTHFHGFQRQPDVRTVEEELIYHLRKL--EYIDDLKASRFRIAGRTDAG 58 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 VH+L V F +E + +L D I I+ + V F RF+ R Sbjct: 59 VHSLGNVISFQSEKEVRVNQINNSL------PDDIQIIAWAPVRFGFKPRFAKRRWYRYI 112 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 L K + + V + + D Sbjct: 113 LFEEDLDIDLLRKTAEVFKGTHDFTNFTKRKQKTTVRTIEDIRITKPIIDEEDKNKKSDF 172 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGP 232 +N + I + + SFL +R + V GK T D+E+ L + + + Sbjct: 173 AHLNKSYSPIFVDIYGESFLWNMVRKMMRIFLDVNYGKLTLDDVERLLNPEEGEPRAYIK 232 Query: 233 LAPPEGLYFDSVEY 246 + E L +EY Sbjct: 233 VVDAENLILMDIEY 246 >gi|317498140|ref|ZP_07956442.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894617|gb|EFV16797.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 206 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 98/180 (54%), Gaps = 6/180 (3%) Query: 1 MIR-YCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M R + IEY+GS Y GWQR N ++IQG +E + +TGE V ++G+GRTD+GVH Sbjct: 1 MKRNIRLTIEYDGSRYQGWQRLGGDSNANTIQGKLESVLSKMTGEDVNINGSGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QVA+F + L YL I I+ +S ++FH+R +A ++YLYRI Sbjct: 61 AYGQVANFHTDCMMSVNEIKNYLTKYL--PSDIGIVEVSEASERFHSRLNAKEKTYLYRI 118 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 E+ W P++LD + M AA L+G HDF F SI S +RTI + + Sbjct: 119 AIPGVSNVFERKYLWYFPETLDIKKMEEAASLLIGTHDFKGFSSIKKTKKSTVRTIYNIE 178 >gi|317011288|gb|ADU85035.1| tRNA pseudouridine synthase A [Helicobacter pylori SouthAfrica7] Length = 242 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFSGYAKQPNKLGVQDKIESALN-LLGIKSAVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAD----RLFSYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 L A SLD N + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDFGSLDLLNTA--LKQFIGKHDFSMFKKEGGALTNPKRIIFNAFAYKT 173 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T + + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAAITAQIHNIQAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|282933805|ref|ZP_06339157.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|281302070|gb|EFA94320.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 223 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 5/210 (2%) Query: 40 GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVD 98 G+ +VVHG+GRTD+GVHAL QV HFD + +P ALN+ + I + IV+ Sbjct: 2 GQRIVVHGSGRTDAGVHALGQVIHFDFPNDNIPANRMVLALNSM--MPTDIIFKDAEIVN 59 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + FH ++S + Y Y + + ++ P L+ M+ AA L+G HDFT+F Sbjct: 60 EDFHVQYSTHGKWYRYIVNQDRFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSF 119 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIE--IRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + Q +RTI + + E + FL+ +R VG+L +G+ + Sbjct: 120 AASGGQIIDKVRTIYYVKIWQKSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVH 179 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 DL++ + A+DR+E AP GLY V Y Sbjct: 180 DLKRVILAKDRQEVINTAPASGLYLYHVFY 209 >gi|326932368|ref|XP_003212291.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Meleagris gallopavo] Length = 292 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 86/277 (31%), Positives = 129/277 (46%), Gaps = 33/277 (11%) Query: 2 IRYCMIIEYNGSGYFG----WQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVH 56 RY + +Y G+ Y G Q +Q +EKA + + H + RTDSGVH Sbjct: 6 TRYLVFFQYWGTKYSGVMHTSAEQSGV-GVQNYLEKAAQNLKPVVPIKFHISSRTDSGVH 64 Query: 57 ALRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 AL AH D+ + +L LN +LK + I IL+ V FHARFSA+ R+ Sbjct: 65 ALCNSAHLDIQRAPGKPAFQEKMLIGCLNHHLK-PEPIRILSAYRVTNNFHARFSALSRT 123 Query: 112 YLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFR--SIHCQ 164 Y+YR++ + + L+ M+ AAQ L+G HDF+TF + Sbjct: 124 YIYRLLMGCTHHSEIPVFERDLCWAPTGGYLNVPAMQDAAQFLLGTHDFSTFCSLNSETP 183 Query: 165 ASSPIRTI------------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SP++TI H E++ +RSFL+ Q+R VG+L VG GK Sbjct: 184 FRSPVKTILQADIQPSSGFLSHHYEYRGLQFWELKFKSRSFLYRQVRRMVGALVAVGQGK 243 Query: 213 WTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEYS 247 +++ L+ +D + P +AP GL+ SVEY+ Sbjct: 244 LAPYHIKELLEMKDARAFPPFAMAPSSGLFLKSVEYN 280 >gi|108760886|ref|YP_632235.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] gi|108464766|gb|ABF89951.1| putative tRNA pseudouridine synthase A [Myxococcus xanthus DK 1622] Length = 281 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 89/249 (35%), Gaps = 11/249 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y G + G+QRQ G ++Q ++E+A+ V G + +GRTD GVHA QV Sbjct: 11 VALWIWYRGGIFRGFQRQPEGPTVQSALEEALRSV-GVPATLMPSGRTDRGVHARMQVVS 69 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 L L K L L + + FHA++SA + Y YR A + Sbjct: 70 VRLEAGDSAESLEKRLPPRLPPGLGLCGV---RRPTSFHAQWSACGKEYRYRFQLGGAVM 126 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHL-----VGRHDFTTFRSIHCQASSPIRTIDHFD-V 177 A + + + + L + RT++ Sbjct: 127 PEWAPYALDVSAEPLLQATAVTPERLAALLRSAEGTRDFIAFHEKSSPRKPRTLESATLH 186 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 G L E R+ F QIR VGS V G AL+ G AP Sbjct: 187 ALGGGLYEARLRGDGFARYQIRYLVGSALKVAAGLLPEEAWLAALETGQ-AMEGFKAPAH 245 Query: 238 GLYFDSVEY 246 GL V Y Sbjct: 246 GLVLWEVRY 254 >gi|241896974|ref|NP_001028662.1| tRNA pseudouridine synthase-like 1 [Mus musculus] gi|218525914|sp|A2ADA5|PUSL1_MOUSE RecName: Full=tRNA pseudouridine synthase-like 1; AltName: Full=tRNA pseudouridylate synthase-like 1; AltName: Full=tRNA-uridine isomerase-like 1 gi|123295163|emb|CAM18398.1| pseudouridylate synthase-like 1 [Mus musculus] Length = 291 Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 116/273 (42%), Gaps = 30/273 (10%) Query: 3 RYCMIIEYNGSGYFGWQR---QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHAL 58 RY + ++Y G+ + G + +E+A + + V + RTD+GVHAL Sbjct: 13 RYLVFLQYLGTDFNGVAAVRGNPRAVGVLNFLEEAAKRLNSVDPVRFTISSRTDAGVHAL 72 Query: 59 RQVAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R KALN +LK +L V FHAR +A R+Y Sbjct: 73 SNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHPAI-RVLKAFRVPNDFHARHAATSRTYQ 131 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR+ T + + LD M+ AAQHL+G HDF+ F+S ++ Sbjct: 132 YRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAGSPVTNT 191 Query: 169 IRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +RT+ + + + ++SFL+ Q+R L VG G Sbjct: 192 VRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAP 251 Query: 216 TDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 T ++ L++QD K +AP GL+ SV Y Sbjct: 252 TQVKVILESQDPLGKYQARVAPARGLFLKSVLY 284 >gi|296206475|ref|XP_002750239.1| PREDICTED: tRNA pseudouridine synthase-like 1-like, partial [Callithrix jacchus] Length = 301 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 81/276 (29%), Positives = 121/276 (43%), Gaps = 36/276 (13%) Query: 3 RYCMIIEYNGSGYFGW------QRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + ++Y G+ + G QR +Q +E+A + E V + RTD+GV Sbjct: 11 RYLVYLQYVGTDFNGVAAVRGAQR---AVGVQNYLEEAAERLNSVEPVRFTISSRTDAGV 67 Query: 56 HALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ + P +L +ALN +L+ +L V FHAR +A R Sbjct: 68 HALSNAAHLDVQRRSGRPPFPPEVLTEALNTHLRHPAI-RVLRAFRVPSDFHARHAATSR 126 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR++T + LD M+ AAQHL+G HDF+ F+S Sbjct: 127 TYLYRLVTGCHRSDELPVFERNLCWALRADRLDVAAMQEAAQHLLGTHDFSAFQSAGSPV 186 Query: 166 SSPIRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 SP+RT+ + + ++SFL+ Q+R L VG G Sbjct: 187 PSPVRTLRRVSVSPGLTSPLVTPQESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLGA 246 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 ++ L++QD K LAP GL+ SV Y Sbjct: 247 LAPAQVKTILESQDPLGKHQTRLAPAHGLFLKSVVY 282 >gi|42559721|sp|P60353|TRUA_SPIKU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|34849384|gb|AAP58883.1| tRNA pseudouridine synthase [Spiroplasma kunkelii CR2-3x] Length = 260 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNARTIQGELEKAFFGICHQKIWTLGASKTDAGVHACDQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L + + + + + + + ++ I Q Sbjct: 61 KVLVKLTFQPRHLAFFIKTVSQTLPPNINIKGYQFVAE---NFSVRTVKVKEYVYTINDQ 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHFDVN 178 + L+ + + +Q VG HDF F + + + Sbjct: 118 EYDLFNHRYELKVNAPLNVKKLHQISQIFVGTHDFAYFAGVKPTEDIATVHTINKIWVKR 177 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR-KECGPLAPPE 237 + IEI + F+ QIR ++ GK + T+L+ L + A P Sbjct: 178 NKAKKIEIHFRGKIFIRYQIRMLTQNILACYAGKVSLTELQAQLNCPPKGTTTKYCAKPY 237 Query: 238 GLYFDSVEY 246 GL ++Y Sbjct: 238 GLCLKKIKY 246 >gi|317014476|gb|ADU81912.1| tRNA pseudouridine synthase A [Helicobacter pylori Gambia94/24] Length = 242 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSGVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAK----LFHYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + +G+HDF+ F+ A++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDLLNTA--LKQFIGKHDFSMFKKEGGAATNPNRIIFNALAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVAFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|241745612|ref|XP_002412440.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505839|gb|EEC15333.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 350 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 118/292 (40%), Gaps = 49/292 (16%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLV--TGEIVVVHGAGRTDSGV 55 RY + Y G+ Y G QRQ + ++QG+IE A+ + E V + A RTD+GV Sbjct: 4 RYLLKFSYLGTRYRGMQRQSSRPCLENWTVQGAIEGALRNLRPLSEPV-LILASRTDTGV 62 Query: 56 HALRQVAHFD-----LVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIR 109 HA H D + + P+ + LN + + I + + V FHAR+ A Sbjct: 63 HASLSAGHVDLVPANTAQCYQPLQIFSVLNRHFARRDHDIVVREVLPVPSWFHARYLAKS 122 Query: 110 RSYLYRI---------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 RSY+YR+ T + L L + + LD + A + L G HD Sbjct: 123 RSYVYRVAVLRPHVLEQSTVLGTTIRHLLPLNEINSCCAVPPLDFSRVHEAMELLSGEHD 182 Query: 155 FTTFRSIHCQASSPIRTIDHF-----------------DVNSFGNLIEIRVVARSFLHTQ 197 F TF+++ + + +L E + +RSFL+ Q Sbjct: 183 FRTFKNVGRTKAEDEVNTVRNVLDFTLRPSQPASAVADPLYDNVDLWEFHIKSRSFLYRQ 242 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDSVEY 246 +R V + VG + + + L+ + +AP GLY ++EY Sbjct: 243 VRRMVSVVLHVGMHPESLPLVRRMLENPHKDSWDNKVRIAPACGLYLTNIEY 294 >gi|298208691|ref|YP_003716870.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] gi|83848614|gb|EAP86483.1| tRNA pseudouridine synthase A [Croceibacter atlanticus HTCC2559] Length = 266 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + ++Y G + GWQ+Q + ++++ +E+ + V G + +GRTD+ V Sbjct: 14 YIIQLQYLGFRFHGWQKQPDVNTVERMVERTLAYVLGHKKFKLLASGRTDAKVSVNNTFV 73 Query: 63 HFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + K N L I L++ D F+ + Y+Y + Sbjct: 74 ELFIDDKPLEVDSFFKDFNVNL--PQDIKALSIKETDANFNIIQHPKLKEYIYLFTYGEK 131 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD----- 176 K L+ E M+ AA G HDF + + + I ID + Sbjct: 132 MHPFCAPYMVCYNKPLNIELMQEAAALFQGEHDFKNYTYKPTEDTQTIGVIDACELSENT 191 Query: 177 ----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 ++VV + F QIR +G+L +G G++ +K L + + + Sbjct: 192 VYTANFFPEKSYMLKVVGQGFKRHQIRLMMGALFDLGSGEFDMQFFKKTLTSTEFIKLTH 251 Query: 233 LAPPEGLYFDSV 244 +A GL SV Sbjct: 252 IAQASGLILQSV 263 >gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239] Length = 293 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 103/254 (40%), Gaps = 28/254 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGE--------IVVVHGAGRTDSG 54 + Y+G Y G+QRQ + ++++G++ +A+ + AGRTD+G Sbjct: 10 AFRVAYDGREYAGFQRQPHATTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRTDAG 69 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ Q F+ + +A N +L ++ + + V FHA A+RR+Y Y Sbjct: 70 VSAVAQTVAFEAPDW----LTPRAFNGHL--PGSVRVWAAADVPAGFHATHDAVRRTYRY 123 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + ++D +R A L G DF S + T Sbjct: 124 HLYAPARVEETD------HDHAVDDGRVRDALARLSGEQDFHNLTSDETGTVRDLTTTAT 177 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK--ECGP 232 + G+++ + V A F +R V +++ VG G + +++ L ++ Sbjct: 178 RE----GDILVVEVSAGGFPRALVRRLVAAVRAVGRGTADPSLIDRLLASEPISGEFGIG 233 Query: 233 LAPPEGLYFDSVEY 246 APPE L V Y Sbjct: 234 PAPPEPLVLWDVSY 247 >gi|260062928|ref|YP_003196008.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] gi|88784496|gb|EAR15666.1| tRNA pseudouridine synthase A [Robiginitalea biformata HTCC2501] Length = 274 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 91/261 (34%), Gaps = 18/261 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVA 62 + + I + G + GWQ Q ++ G I K ++ V + GAGRTD+ V A Sbjct: 9 FLIRIAFLGFRFHGWQEQPGQRTVAGMIRKTFRFVLPDTPVKILGAGRTDARVSARDFAV 68 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +P A + I + ++ V F+ ++Y Y T P Sbjct: 69 QVIARAPELPPFGVLADALNENLPPDIRVNSIRPVPPGFNPIRDCASKTYRYYFQTGNHP 128 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF------- 175 A +P S D MR AA G H+F F + + +R + Sbjct: 129 DAYWTPFVGFLPGSPDITRMREAAPLFEGMHNFRCFTASPSEDKKYVRRVTRCRLGVGSP 188 Query: 176 ----------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + ++ + V A F Q+R + +L VG + L K L Sbjct: 189 MDGVVAGKDPEGDTGFTAHMLEVRAPGFGRNQVRLMMAALAAVGRQELQPETLVKVLDEG 248 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + P GL+ VE+ Sbjct: 249 QGWMSDSIVPASGLHLMHVEF 269 >gi|332293112|ref|YP_004431721.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171198|gb|AEE20453.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 259 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ V + +GRTD+ V A Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSANVAYV 67 Query: 63 HFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L K LN L I L ++ VDK+F+ + I + Y+Y + Sbjct: 68 ELFLNDSPLPEEGFLKLLNNNL--PQDIRCLEITQVDKKFNVMDAPIAKEYVYLFSYGEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH------- 174 I SLD E M+ AA+ G HDF ++ + I I Sbjct: 126 NHPFAAPYMINIAGSLDIELMKEAARLFEGEHDFRSYAYKPNPETKTIGNISSSLIEPNE 185 Query: 175 --FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV + F QIR +G L +G+GK +K L A + + Sbjct: 186 LYTANFFPKESFAFRVSGKGFKRHQIRLMMGMLFDIGEGKVDLDFFKKTLDASNDIKLSR 245 Query: 233 LAPPEGLYFDSV 244 +A GL +V Sbjct: 246 IAQASGLLLQNV 257 >gi|308062368|gb|ADO04256.1| tRNA pseudouridine synthase A [Helicobacter pylori Cuz20] Length = 242 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSTVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L ++ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYTQKHWNAAK----LFYHLAPKLAPHVVLKRLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGAITNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|301788920|ref|XP_002929883.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Ailuropoda melanoleuca] Length = 290 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 119/273 (43%), Gaps = 31/273 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKN-GSSI--QGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ + G + ++ Q +E+A + V + RTD+GVHAL Sbjct: 11 RYLVYFQYLGTDFNGVAAVRGSQRAVAXQNYLEEAAKRLNSVVPVKFTISSRTDAGVHAL 70 Query: 59 RQVAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ R +ALNA+L+ IL V FHAR +A R+YL Sbjct: 71 CNAAHLDVQRRSGQPPFSPEVLAEALNAHLRHPAI-RILQAFRVPSDFHARHAATSRTYL 129 Query: 114 YRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 YR++T LD + M+ AAQHL+G HDF+ F+S A+S Sbjct: 130 YRLVTGCHRPDQLSVFERNRCWPLRAGCLDVDAMQEAAQHLLGTHDFSAFQSAGSPAASS 189 Query: 169 IRTIDHFD------------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 +RT+ + + ++SFL+ Q+R L VG G Sbjct: 190 VRTLRRASVSPDPGSPFVLPQENRLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALMPA 249 Query: 217 DLEKALQAQD---RKECGPLAPPEGLYFDSVEY 246 ++ L+++D R + +AP GL+ SV Y Sbjct: 250 QVKVILESRDPLGRHQAR-VAPAHGLFLKSVLY 281 >gi|315586982|gb|ADU41363.1| tRNA-pseudouridine synthase I [Helicobacter pylori 35A] Length = 242 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGVYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL ++ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAK----LFYYLAPKLAPHVVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQTQIHNTKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|261838425|gb|ACX98191.1| pseudouridylate synthase I [Helicobacter pylori 51] Length = 242 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYHLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|217032587|ref|ZP_03438076.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298735906|ref|YP_003728431.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] gi|216945723|gb|EEC24348.1| hypothetical protein HPB128_159g13 [Helicobacter pylori B128] gi|298355095|emb|CBI65967.1| tRNA pseudouridine synthase A [Helicobacter pylori B8] Length = 242 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + + I Y+G+ + G+ +Q N +Q IE A+ + G VV AGRTD GVHA Q Sbjct: 1 MRCFKVTIAYDGAYFLGYAKQPNKLGVQDKIESALN-MLGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L L I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAK----LFYCLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYKT 173 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|15612084|ref|NP_223736.1| tRNA pseudouridine synthase A [Helicobacter pylori J99] gi|8134768|sp|Q9ZKC0|TRUA_HELPJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|4155610|gb|AAD06601.1| PSEUDOURIDYLATE SYNTHASE I [Helicobacter pylori J99] Length = 242 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSGVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 ALSFHAPKHWNAAK----LFHYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N+ + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNIA--LKQFIGKHDFSMFKKEGGATTNPNRIIFNALAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|154174016|ref|YP_001408137.1| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] gi|153793037|gb|EAU00484.2| tRNA pseudouridine synthase A [Campylobacter curvus 525.92] Length = 241 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 86/245 (35%), Gaps = 5/245 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q Q + + +Q ++ +A+ V G + + RTD GVHA Q Sbjct: 1 MKIQLIFSYDGSKFQGSQTQPHENGVQDALSRALAHV-GIFDKLALSSRTDKGVHATAQS 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + K L + D + ++ LYR I Sbjct: 60 ATVECGEHFKDLDRLKNLINRHAHPFIHIKNIKRVND---DFQARYDAKARLYRYIIDHG 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + L D + +G HDF+ F SPIR I + Sbjct: 117 RYDVFHAEHCLFAPKFDTARANHILKIFIGEHDFSAFMKTGSGTKSPIREIYKAYCYEYK 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 N I A FL Q+R V SL +L + A +GLY Sbjct: 177 NKTVIVFKANGFLRAQVRLMVASLLK-ALNLKDGDELLNLAINHKKPLTRIPAAAQGLYL 235 Query: 242 DSVEY 246 V Y Sbjct: 236 SRVFY 240 >gi|270014158|gb|EFA10606.1| hypothetical protein TcasGA2_TC012867 [Tribolium castaneum] Length = 315 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 74/296 (25%), Positives = 101/296 (34%), Gaps = 51/296 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--------SIQGSIEKAIFLVTGE-IVVVHGAGRTDS 53 RY + Y G+ + G QRQ G ++QG +E A+ + VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-----ISILNLSIVDKQFHARFSAI 108 GVHAL H DL R K + L I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRI--------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 R+YLYRI + ++D + Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNS--------------------FGNLIEIRVVARSFL 194 R H R + DV +I V A FL Sbjct: 185 TFMGRGSHDPDKITRRVVTRVDVCDGRALTYSSFSWPRFASGSAENYQFYDIYVQATGFL 244 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDSVEYS 247 + Q+R V SL VG GK T +L+ L+ + P GLY VEYS Sbjct: 245 YRQVRRMVASLIAVGQGKKTRRELKLMLEVPSHRSWDERIKTVPAYGLYLCEVEYS 300 >gi|317182345|dbj|BAJ60129.1| tRNA pseudouridine synthase A [Helicobacter pylori F57] Length = 242 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P RTI + Sbjct: 116 KTPFLVPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGAITNPKRTIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FITGHECVVFKIIGDAFLRSSVRLIVQACVKYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|156538761|ref|XP_001607889.1| PREDICTED: similar to CG34140-PA [Nasonia vitripennis] Length = 298 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 119/283 (42%), Gaps = 38/283 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHG-AGRTDSGV 55 RY + + Y G+ Y G Q+ N +IQG+IE ++ + AGRTD+GV Sbjct: 6 RRYLLKLSYIGTSYRGSQKHVNNAVVDIDTIQGAIEYSMRRFNFSNIPTISLAGRTDAGV 65 Query: 56 HALRQVAHFDLVREWVPVILC--KALNAYLKI-SDTISILNLSIVDKQFHARFSAIRRSY 112 HAL AH DL + +N L + I I++ V K FHAR+SA R+Y Sbjct: 66 HALCTSAHVDLEHSGTLDTEYLVRMMNRNLINANHEIRIMSAHEVSKDFHARYSAKSRTY 125 Query: 113 LYRIITRQAPLALEKG--------RAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIH 162 LYR+I + PL + P++ D E +R + G DF TF R Sbjct: 126 LYRLIIPKDPLDHRFPIAEANRSLFLNMYPQNFDIERLRSGIKLFCGTKDFMTFSARKRD 185 Query: 163 CQASSPIRTIDHFDVNSFG----------------NLIEIRVVARSFLHTQIRSFVGSLK 206 +R ++ + + +RSFL+ QIR VGSL Sbjct: 186 RNPEFEMRRNFVRTLHVTMKEAGPLMSFDPLSKNLDYWHLEFTSRSFLYNQIRRIVGSLI 245 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +G K + D++ +Q P A P GLY +VEY Sbjct: 246 ALGSHKVSEEDIQTMIQVPSHHNWNPHVTPAAPRGLYLKNVEY 288 >gi|210135252|ref|YP_002301691.1| tRNA pseudouridine synthase A [Helicobacter pylori P12] gi|238057731|sp|B6JMT3|TRUA_HELP2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|210133220|gb|ACJ08211.1| pseudouridylate synthase I [Helicobacter pylori P12] Length = 242 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWSADK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID----HFD 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDLLNTA--LKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|254819223|ref|ZP_05224224.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC 13950] Length = 251 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 16/232 (6%) Query: 29 GSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---------- 78 G +++A+ + V + AGRTD+GVHA QVAH D+ +P +A Sbjct: 3 GVLDEALTTIFRTPVRLRAAGRTDAGVHATGQVAHVDVPAAALPNAYSRAPHVGEAEFLP 62 Query: 79 ----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 L +L + + + Y + P Sbjct: 63 LLRRLGRFLPTDVRVVDIVRAPAGFDARFSALRRHYVYRLSTA-PWGVDPQQVRYVTAWP 121 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD E M A++ L+G HDF F A++ R + + G+LI RV A +F Sbjct: 122 RPLDVEAMATASRDLLGLHDFAAFCRHRENATTI-RDLQRLEWTREGDLITARVSADAFC 180 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +RS VG+L VG+ + + + L A R AP GL V+Y Sbjct: 181 WSMVRSLVGALLAVGEHRRPVSWCRELLSATARSSDYATAPAHGLTLVGVDY 232 >gi|108563457|ref|YP_627773.1| tRNA pseudouridine synthase A [Helicobacter pylori HPAG1] gi|122980474|sp|Q1CSH3|TRUA_HELPH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|107837230|gb|ABF85099.1| pseudouridylate synthase I [Helicobacter pylori HPAG1] Length = 242 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ + G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIENALNTL-GIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNVAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDLLNSA--LKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTA 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQTCVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 +GLY V Y Sbjct: 233 DGLYLHRVYY 242 >gi|332673893|gb|AEE70710.1| tRNA pseudouridine synthase A [Helicobacter pylori 83] Length = 242 Score = 113 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHADNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAK----LFYHLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P R I Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFDAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|115730971|ref|XP_781664.2| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] gi|115939533|ref|XP_001190679.1| PREDICTED: similar to MGC80334 protein [Strongylocentrotus purpuratus] Length = 306 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 38/283 (13%) Query: 1 MIRYCMIIEYNGSGYFG-------WQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTD 52 M R+ + +Y G+ Y G + +Q IE A+ + V +H + RTD Sbjct: 1 MGRFLIYFQYIGTRYRGVVRATSLSASGEKFVGVQDVIEGALDELKPVIPVKLHVSSRTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCK---------ALNAYLKISDTISILNLSIVDKQFHA 103 +GVHAL AHFD++ + + A+N L+ I I+ V FH+ Sbjct: 61 TGVHALCNTAHFDMIFKSKRTGEPRDILAESITAAVNKKLE-DHDIRIIKTLRVQDSFHS 119 Query: 104 RFSAIRRSYLYRIITRQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + A+ R+YLYR+ EK R+W + LD +M+ A+ VG HDFT FR+ Sbjct: 120 QHLAMGRTYLYRLAMGCRQIELPVFEKNRSWAFDQRLDIPSMKEASGRFVGTHDFTAFRN 179 Query: 161 IHCQASS-----------PIRT----IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 RT H + + +E+ +RSFL+ QIR G+L Sbjct: 180 SSMDDDKKSPIKTIDMIEFRRTRGFLYHHCNKMAQLEFLELTFHSRSFLYKQIRRMTGAL 239 Query: 206 KLVGDGKWTSTDLEKALQAQDRKEC--GPLAPPEGLYFDSVEY 246 VG G+ + + L+++D +AP GLY + Y Sbjct: 240 VAVGLGRIAPSHITTILESRDNSHMHRTTMAPAHGLYLKEISY 282 >gi|195436014|ref|XP_002065973.1| GK25867, isoform B [Drosophila willistoni] gi|194162058|gb|EDW76959.1| GK25867, isoform B [Drosophila willistoni] Length = 313 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 103/302 (34%), Gaps = 56/302 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ Q + +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRYH 120 Query: 107 AIRRSYLYR------------------IITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 AI R+YLYR L++ A Sbjct: 121 AIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARLF 180 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDV---------------------NSFGNLIEIR 187 L T + S + N + EI Sbjct: 181 LGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSV 244 + A+SFL+ Q+R VG+L +G GK + + L + P LAP GLY V Sbjct: 241 IKAKSFLYKQVRRIVGTLLALGTGKIDEKCIYQMLTIPSKNSWEPRILLAPACGLYLCQV 300 Query: 245 EY 246 Y Sbjct: 301 HY 302 >gi|330790485|ref|XP_003283327.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] gi|325086752|gb|EGC40137.1| hypothetical protein DICPUDRAFT_25596 [Dictyostelium purpureum] Length = 323 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 119/288 (41%), Gaps = 43/288 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 RY + EY G + GWQR N +Q +E ++ + + + V G+ RTDSGV AL Sbjct: 3 PRYKITYEYVGKYFTGWQRLTYDINPLPVQNVLENSLKHICNKEIKVFGSSRTDSGVSAL 62 Query: 59 RQVAHFDLVREWVPVILCKAL------------NAYLKISDTISILNLSIVDKQFHARFS 106 +HFD+ + L N + D + I+ IVD FH+RF Sbjct: 63 GNTSHFDIDQRTSRKGKPLPLLTTDELTMAINYNVGEQYLDRVRIIKTEIVDDNFHSRFH 122 Query: 107 AIRRSYLYRIITRQAPLA---LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 A R+YLY+I+ R I LD M+ AA+ LVGRHDF++FRS C Sbjct: 123 ATSRTYLYKILANCGKKQTPLELLDRVLEISFILDVNKMKEAAEILVGRHDFSSFRSKDC 182 Query: 164 QASS-------------------------PIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + + +VN I I + A+SFLH Q+ Sbjct: 183 TKNPVRTIEYIKIIELPTPEIIRYHPDFINCSKEINNNVNHGLQYIGIEIKAQSFLHNQV 242 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R +L VG G T L++ L+ +DR E L V Y Sbjct: 243 RIMSSALIEVGKGTITKDQLKEILEKKDRLAAPSTIASEPLTLIKVSY 290 >gi|225011098|ref|ZP_03701561.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] gi|225004732|gb|EEG42691.1| tRNA pseudouridine synthase A [Flavobacteria bacterium MS024-3C] Length = 268 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 16/259 (6%) Query: 1 MIR----YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI--VVVHGAGRTDSG 54 M + Y + + Y G Y GWQ+Q +I+ + K I V GE + GAGRTD+ Sbjct: 1 MQKKKYYYLVRVSYLGFRYSGWQKQPGVKTIESMLTKTISFVLGETRSFKILGAGRTDAK 60 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V ++ + E + + L + I + +++ V+++F+ SA ++Y Y Sbjct: 61 VSSIHGAFELFIEHEPLKNLDALMDLFNLNLPADIRVESITAVEEKFNIIHSAKEKTYCY 120 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR-SIHCQASSPIRTID 173 P+ L+ M+ AA+ G HDF F + S IRTI Sbjct: 121 LFSFGSKAHPFCAPIMANYPEDLNITLMQEAAKLFEGTHDFKNFTARKDKKNSQTIRTIA 180 Query: 174 HFD---------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + + V + FL QIR +G+L +G + +++ L + Sbjct: 181 SCELKKNKAISASFFPEDSYVLEVRGKGFLRYQIRLMMGALICLGRNEIDLEGIKRLLNS 240 Query: 225 QDRKECGPLAPPEGLYFDS 243 +A GL+ Sbjct: 241 DLDDFIPYVAAGSGLHLKE 259 >gi|222630953|gb|EEE63085.1| hypothetical protein OsJ_17893 [Oryza sativa Japonica Group] Length = 279 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 8/212 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T + + + GAGRTD+GVHA Sbjct: 64 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWG 123 Query: 60 QVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + A+N L + ++ + +FHAR S + Y Y+I Sbjct: 124 QVAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKP--EFHARTSTRSKIYHYKIYN 181 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFD 176 A+ L+ + MR AA+H VG HDFT+F + + + SPI+ I FD Sbjct: 182 GPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFD 241 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 V G ++++ + FL+ Q+R+ GS V Sbjct: 242 VIEMGAILQLEIEGTGFLYRQVRNMAGSSLAV 273 >gi|260188510|ref|ZP_05765984.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CPHL_A] gi|289449159|ref|ZP_06438903.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] gi|289422117|gb|EFD19318.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis CPHL_A] Length = 256 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 16/238 (6%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---- 78 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P +A Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 79 ----------LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 L +L I + + Y + Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ-QAR 120 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 P+ LD + M A++ L+G HDF F A++ R + D + G+L+ V Sbjct: 121 YITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTI-RDLQRLDWSRAGSLVTAHV 179 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 180 TADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDY 237 >gi|313125232|ref|YP_004035496.1| pseudouridylate synthase i [Halogeometricum borinquense DSM 11551] gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551] Length = 272 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 35/253 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGV 55 +R I Y+G ++G+QRQ + +++ SI A+ + + AGRTD+GV Sbjct: 1 MR-AFRIAYDGRPFYGFQRQPSVPTVEDSIFDALRSLGVLDEDARKPTGYAAAGRTDAGV 59 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 AL Q FD +A+NA L +++ + V ++FHA A RR+Y+Y Sbjct: 60 SALAQTVAFDCPEW----CTPRAMNAEL--PESVRAWAAADVGERFHATHDAARRAYVYD 113 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + +A D + AA L G HDF + Sbjct: 114 LYAPEA----------------DESKAQAAADALTGEHDFHNLTPDDTGTVRDVTVSVEA 157 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPL 233 D G + + V A F + +R + V G D+E L + E P Sbjct: 158 D----GEFLVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPETVPGPEGVPT 213 Query: 234 APPEGLYFDSVEY 246 AP E L + V Y Sbjct: 214 APAEPLVLERVVY 226 >gi|121639375|ref|YP_979599.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663320|ref|YP_001284843.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|215405494|ref|ZP_03417675.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 02_1987] gi|215413368|ref|ZP_03422053.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis 94_M4241A] gi|215428962|ref|ZP_03426881.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T92] gi|215432426|ref|ZP_03430345.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis EAS054] gi|215447792|ref|ZP_03434544.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T85] gi|218755231|ref|ZP_03534027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis GM 1503] gi|219559524|ref|ZP_03538600.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T17] gi|224991871|ref|YP_002646560.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|254552559|ref|ZP_05143006.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260202637|ref|ZP_05770128.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|260206826|ref|ZP_05774317.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis K85] gi|289445055|ref|ZP_06434799.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289571689|ref|ZP_06451916.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289576191|ref|ZP_06456418.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289752179|ref|ZP_06511557.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289755588|ref|ZP_06514966.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289759618|ref|ZP_06518996.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|289763637|ref|ZP_06523015.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|297636114|ref|ZP_06953894.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207] gi|297733114|ref|ZP_06962232.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN R506] gi|306777802|ref|ZP_07416139.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|306782521|ref|ZP_07420858.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|306809459|ref|ZP_07446127.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|313660445|ref|ZP_07817325.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN V2475] gi|2104378|emb|CAB08721.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium tuberculosis H37Rv] gi|31620228|emb|CAD95671.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97] gi|121495023|emb|CAL73509.1| Probable tRNA pseudouridine synthase A truA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148507472|gb|ABQ75281.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] gi|224774986|dbj|BAH27792.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo 172] gi|289417974|gb|EFD15214.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46] gi|289540622|gb|EFD45200.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85] gi|289545443|gb|EFD49091.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17] gi|289692766|gb|EFD60195.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92] gi|289696175|gb|EFD63604.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis EAS054] gi|289711143|gb|EFD75159.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM 1503] gi|289715182|gb|EFD79194.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85] gi|308213887|gb|EFO73286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu001] gi|308324838|gb|EFP13689.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu002] gi|308344299|gb|EFP33150.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis SUMu007] gi|326905301|gb|EGE52234.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis W-148] Length = 256 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 16/238 (6%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA---- 78 ++ G ++ A+ + V + AGRTD+GVHA QVAH D+ + +P +A Sbjct: 2 GQRTVAGDLDAALTTIFRTPVRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVG 61 Query: 79 ----------LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 L +L I + + Y + Sbjct: 62 DPEFLPLLRRLGRFLPADVRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQ-QAR 120 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 P+ LD + M A++ L+G HDF F A++ R + D + G L+ V Sbjct: 121 YITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTI-RDLQRLDWSRAGTLVTAHV 179 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 180 TADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDY 237 >gi|307637758|gb|ADN80208.1| tRNA pseudo uridine synthase A [Helicobacter pylori 908] gi|325996359|gb|ADZ51764.1| tRNA pseudouridine synthase A [Helicobacter pylori 2018] gi|325997947|gb|ADZ50155.1| tRNA pseudouridine synthase A [Helicobacter pylori 2017] Length = 242 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 ALSFHAPKHWNADK----LFHYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + +G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDLLNTA--LKQFIGKHDFSMFKKEGGATTNPNRIIFNALAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K +++ + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIKACVQYSLEKIALAEIQAQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|328702786|ref|XP_003242010.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Acyrthosiphon pisum] Length = 358 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 79/290 (27%), Positives = 117/290 (40%), Gaps = 44/290 (15%) Query: 1 MI--RYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG-EIVVVHGAG 49 M RY + Y G+ + G QRQ + SS+QG +E A+ + +H + Sbjct: 1 MTINRYLLYFSYIGTRFRGVQRQLTYDMVHNDDPSSVQGLLEYALKQLQPLNTPKLHLSS 60 Query: 50 RTDSGVHALRQVAHFD--LVREWVPVILCKALNAYL-KISDTISILNLSIVDKQFHARFS 106 RTD GVH+ + AH D L P L +N +L I +++ IV F+AR Sbjct: 61 RTDQGVHSFKSSAHLDLELPYTCHPNKLVFQVNNFLSSCEVPIKLVSAQIVPNDFNARSC 120 Query: 107 AIRRSYLYRI--------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 A R YLYR+ P+ +K ++ D E ++ +G Sbjct: 121 AKWRKYLYRLAVVKSEFKDLYAERFVFPIPITEDKRCYFIQKSDFDVELVKNVLPLFIGT 180 Query: 153 HDFTTF-------------RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 D+ TF R+ + P R+ D++ + N +IRV ARSFL+ QIR Sbjct: 181 KDYKTFMGKSGLNTELSTIRTWNNIEIVPGRSFYPTDIDKYYNYWDIRVNARSFLYKQIR 240 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 VG L V T D++ P AP GLY + Y Sbjct: 241 RTVGVLIKVAQNIITYDDVKYMFDNPSINSWNPKISTAPSYGLYLYDIGY 290 >gi|328875656|gb|EGG24020.1| hypothetical protein DFA_06158 [Dictyostelium fasciculatum] Length = 403 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 124/257 (48%), Gaps = 33/257 (12%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV--------- 73 NG SIQ +IE + + + + + G+ RTDSGV++L QVAH DL + Sbjct: 82 NGRSIQYAIEHGLSHIMRQRIQIVGSSRTDSGVNSLCQVAHCDLPNQRYDKKGTIEQEQL 141 Query: 74 ---ILCKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL---E 126 I+ ALN L + + I I+++ VD +FH+R++A R+YLY+I+T P + Sbjct: 142 TPSIIKIALNQQLKRHNHDIRIVSVEKVDNEFHSRYNATSRTYLYKIMTGVRPTEVPLEL 201 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 K + W I ++LD + M+ A L G HDF + RS CQA SPIR+I H + Sbjct: 202 KNKVWPIWETLDIDQMKETASFLQGLHDFDSLRSAKCQAKSPIRSISHIKIIDLPLPDIW 261 Query: 187 RV-----------------VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 R RSFLH Q+R L +G G T +L++ ++ +DR Sbjct: 262 RYNNDDSTPPKIQYIGLEIKGRSFLHNQVRIMSSCLAEIGRGHMTLDNLKEIMKGRDRTL 321 Query: 230 CGPLAPPEGLYFDSVEY 246 AP L V Y Sbjct: 322 APATAPAYPLTLVKVSY 338 >gi|152993424|ref|YP_001359145.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] gi|151425285|dbj|BAF72788.1| tRNA pseudouridine synthase A [Sulfurovum sp. NBC37-1] Length = 240 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 117/246 (47%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +R +I Y+GS + G+Q+Q + ++ +IE A+ + I + G+GRTD+GVHA Q Sbjct: 1 MRVKAVIAYDGSAFQGFQKQTRTNRTVTTTIENALADL-QIISPLTGSGRTDAGVHASGQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFDL L + N+ K TI ++S FHARFSA + +YR I ++ Sbjct: 60 VIHFDLP--EFWSDLNRLKNSLNKKLSTIRFKHISAAPDDFHARFSA--KKRIYRYIFKE 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L++ + + S D + ++ A VG HDF F + +R I + Sbjct: 116 NELSVFERKYVAHYSSFDPDILKRALLMFVGEHDFIYFHKTGSDIHTTVRKIYDANYRQE 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + A FL +Q+R V S L + T L+K + A+ R PPEGLY Sbjct: 176 GKYHFLYFTANGFLRSQVRMMVESAMLCAQNELTLEQLQKQINAEKRYHSRLS-PPEGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LARILY 240 >gi|57242355|ref|ZP_00370294.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] gi|57017035|gb|EAL53817.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis RM3195] Length = 240 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 65/246 (26%), Positives = 103/246 (41%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q ++ A+ + G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSACQPHLNSVQDALAAALAHL-GIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + V L + +N + I I +L V + + RF R Y Y + Sbjct: 60 ACVECGEHFKDLVYLKRQINRF--THPFIHIKSLERVSENYAVRFDVRAREYRYIFHHGE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L + D + H VG DF F+ A + +R + ++ Sbjct: 118 FNPFLSP--YVCFSERFDIKKANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L A FL QIR V S+ V G+ + L++ ++A+ LAP GLY Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEAKKCHY-RFLAPANGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRIIY 240 >gi|317177844|dbj|BAJ55633.1| tRNA pseudouridine synthase A [Helicobacter pylori F16] Length = 242 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G +V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSIVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAK----LFYHLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLVPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|308063876|gb|ADO05763.1| tRNA pseudouridine synthase A [Helicobacter pylori Sat464] Length = 242 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL ++ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYYLAPKLAPHVVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|188527873|ref|YP_001910560.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] gi|238691941|sp|B2UUJ8|TRUA_HELPS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|188144113|gb|ACD48530.1| tRNA pseudouridine synthase A [Helicobacter pylori Shi470] Length = 242 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL ++ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYYLAPKLAPHVVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|308184830|ref|YP_003928963.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] gi|308060750|gb|ADO02646.1| tRNA pseudouridine synthase A [Helicobacter pylori SJM180] Length = 242 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I+ Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKAIVAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNADK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKSL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN-- 178 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDLLNTA--LKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYKT 173 Query: 179 --SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 SIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|86143390|ref|ZP_01061792.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] gi|85830295|gb|EAQ48755.1| tRNA pseudouridine synthase A [Leeuwenhoekiella blandensis MED217] Length = 261 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 90/251 (35%), Gaps = 10/251 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +++ + V G AGRTD+ V Sbjct: 8 YLLKIQYLGFRYHGWQKQPDLLTVERMMQRTLKYVLGRNNFKFIAAGRTDAKVSVNETYV 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L E + + + I +L + Q + + + Y+Y + Sbjct: 68 ELILKEESLTDLQEFHKLFNENLPQDIRLLEIIEKADQTNIIQAPKLKEYIYLFSFGEKN 127 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-------- 174 L+ E M+ A + G HD+ + + + TI+ Sbjct: 128 HPFCAPYMINAKGELNIELMQKGAALMQGTHDYRNYAYKASAETQTVMTIESSVIEENTL 187 Query: 175 -FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + RVV F Q+R +G+L +G G + EK+L + + + Sbjct: 188 YTANFFPKHSYVFRVVGAGFKRHQVRLMMGALFDLGSGVLSWEAFEKSLDGKIPFKLTHI 247 Query: 234 APPEGLYFDSV 244 A GL V Sbjct: 248 AQASGLILQEV 258 >gi|315638468|ref|ZP_07893645.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] gi|315481459|gb|EFU72086.1| tRNA pseudouridine synthase A [Campylobacter upsaliensis JV21] Length = 240 Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 104/246 (42%), Gaps = 7/246 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q + +S+Q ++ A+ + G V A RTD GVHALR V Sbjct: 1 MRLKLVFSYDGSAFLGSASQPHLNSVQDALAAALAHL-GIFSPVLFASRTDKGVHALRAV 59 Query: 62 AHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 A + V L + +N + I I +L V + + RF R Y Y + Sbjct: 60 ACVECGKHFKDLVYLKRQINRF--AHPFIHIKSLERVSENYAVRFDVRAREYRYIFHHGE 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L R + D + H VG DF F+ A + +R + ++ Sbjct: 118 FNPFL--SRYVCFSERFDIKRANELLSHFVGEKDFKFFQKAGGSAKTSVRIMFFARAYAY 175 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 +L A FL QIR V S+ V G+ + L++ ++A+ LAP GLY Sbjct: 176 KDLSIFCFRANGFLRAQIRLSVASVMAVLRGELSEDKLKEQIEAKACHY-RLLAPANGLY 234 Query: 241 FDSVEY 246 + Y Sbjct: 235 LSRIIY 240 >gi|308183197|ref|YP_003927324.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] gi|308065382|gb|ADO07274.1| tRNA pseudouridine synthase A [Helicobacter pylori PeCan4] Length = 242 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEDALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKRFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +V+ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKVIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|86130141|ref|ZP_01048741.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] gi|85818816|gb|EAQ39975.1| tRNA pseudouridine synthase A [Dokdonia donghaensis MED134] Length = 259 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 Y + I+Y G Y GWQ+Q + +++ +E+ V + +GRTD+ V A Sbjct: 8 YLLKIQYLGFRYHGWQKQPDVLTVERMMERTFSYVLDRKNFKLLASGRTDAKVSANVAYV 67 Query: 63 HFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L +P LN L I L ++ VDK+F+ + I + Y+Y + Sbjct: 68 ELFLNDSPLPAEGFLTLLNDNL--PQDIRCLQITQVDKKFNVMDAPIAKEYVYLFSYGEK 125 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 I LD E M+ AA+ G HDF ++ + I + + Sbjct: 126 NHPFAAPYMINIAGDLDIELMKEAARLFEGEHDFRSYAYKPNPQTQTIGHVLSSTIEIND 185 Query: 182 NL---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 RV + F QIR +G+L +G G +K L A + + Sbjct: 186 LYTASFFPEESYAFRVSGKGFKRHQIRLMMGALFDLGQGNIDLEFFKKTLDASNDIKLTR 245 Query: 233 LAPPEGLYFDSV 244 +A GL V Sbjct: 246 IAQASGLLLQDV 257 >gi|194746922|ref|XP_001955903.1| GF24924 [Drosophila ananassae] gi|190623185|gb|EDV38709.1| GF24924 [Drosophila ananassae] Length = 307 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 108/303 (35%), Gaps = 57/303 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ Q + ++IQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTSFRGIQKTVNKSEQPRLDTNTIQGCLELALRVFRPTNDIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I IL+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLQRYDGQPYDTGTLTGVLNRTLDKQRLPIRILSSQVVSDSFHCRYH 120 Query: 107 AIRRSYLYRI------------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 A R+YLYR P+ +L S D E +R AA+ Sbjct: 121 ATGRTYLYRFAVSRNTGAVESGNLRNKGYESFIPVEELDRCYFLQSTSFDIERVRNAARM 180 Query: 149 L---VGRHDFTTFRSIHCQASSPIRTIDH-------------------FDVNSFGNLIEI 186 F + + R + + EI Sbjct: 181 FIGVHDFRTFMSVSRQKSPSRDHPRFTLRKIDDISIRPGRALAVAGNAALAANSYDYWEI 240 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDS 243 + A+SFL+ Q+R VG+L +G G+ + + L + LAP GLY Sbjct: 241 EIRAKSFLYKQVRRIVGTLLALGCGRIDEKSVYQMLTIPSKNSWDHRVLLAPACGLYLCR 300 Query: 244 VEY 246 V Y Sbjct: 301 VHY 303 >gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374] Length = 288 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L A + + + N Q + + + + Sbjct: 114 FRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQK-TTTRTIDDIKITKANLNDYHKKEF-PN 171 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLA 234 ++ + + + + SFL +R + V GK + +E+ L D + + Sbjct: 172 LHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAENDPRANIKVL 231 Query: 235 PPEGLYFDSVEY 246 P+ L ++Y Sbjct: 232 DPDYLILMDIKY 243 >gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC 35061] gi|226708656|sp|A5ULI2|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii ATCC 35061] Length = 290 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L A + + + N Q + + + + Sbjct: 114 FRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQK-TTTRTIDDIKITKANLNDYHKKEF-PN 171 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLA 234 ++ + + + + SFL +R + V GK + +E+ L D + + Sbjct: 172 LHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAENDPRANIKVL 231 Query: 235 PPEGLYFDSVEY 246 P+ L ++Y Sbjct: 232 DPDYLILMDIKY 243 >gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] gi|222434713|gb|EEE41878.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii DSM 2375] Length = 288 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG----EIVVVHGAGRTDSGVH 56 M R + I Y G+ + G+QRQ + +++ + + + + AGRTD+GVH Sbjct: 1 MKRTALKIGYIGTNFHGFQRQPDLRTVEEELIYHLRKLGYIDDLKKSRFRIAGRTDAGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L V F +E + +L D I IL + V F R+ A R Y Y + Sbjct: 61 SLGNVISFQSEKEVRVNEINNSL------PDDIQILAKAPVRFGFKPRY-AEMRQYRYVL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 L A + + + N Q + + + + Sbjct: 114 FRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQK-TTTRTIDDIKITKANLNDYHKKEF-PN 171 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLA 234 ++ + + + + SFL +R + V GK + +E+ L D + + Sbjct: 172 LHDTLSPVFVDIYGESFLWNMVRKMMRVFVDVAIGKLSLEKVEELLNPAENDLRANIKVL 231 Query: 235 PPEGLYFDSVEY 246 P+ L ++Y Sbjct: 232 DPDYLILMDIKY 243 >gi|322374719|ref|ZP_08049233.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280219|gb|EFX57258.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 163 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 3/161 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVHAL Sbjct: 1 MTRYKATISYDGFAFAGFQRQPHARSVQEEIEKTLTRLNKGQAIAVHGAGRTDSGVHALE 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 61 QVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVDRG 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + + + A P LD E M+ A + L G HDFT + Sbjct: 119 RPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGLQH 159 >gi|317178604|dbj|BAJ56392.1| tRNA pseudouridine synthase A [Helicobacter pylori F30] Length = 242 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFCAPKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 181 ----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIAGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQVQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|208434988|ref|YP_002266654.1| pseudo uridylate synthase I [Helicobacter pylori G27] gi|238057732|sp|B5Z889|TRUA_HELPG RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|208432917|gb|ACI27788.1| pseudo uridylate synthase I [Helicobacter pylori G27] Length = 242 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 F + W L L I+ + +K FHARF A +R+Y Y + Sbjct: 60 TLSFHAPKHWNAAK----LFYCLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSLFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNLKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|303233145|ref|ZP_07319818.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] gi|302480730|gb|EFL43817.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4] Length = 321 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 62/254 (24%), Positives = 88/254 (34%), Gaps = 13/254 (5%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G + G+ Q+ +++G + + V V + AGRTD+GVHA Q F Sbjct: 58 LRLGYEGEQFAGYAFQEGQRTVEGCVRDVLQRVLRRDVTLTCAGRTDAGVHAHAQYVSFP 117 Query: 66 LVREWVPVILCKALNAYLK-ISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL- 123 + E L + I+I + F ARF A RSY YRI T Sbjct: 118 VTHEECACAKSSLLRSLNMLCPADIAIRTIYQAAPDFSARFDARSRSYTYRIATAPLKPV 177 Query: 124 ---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--------SPIRTI 172 + +D N A + + Sbjct: 178 LTAPFVWWNRHVHHVCMDDMNAAAQALIGEHNFESFCKATSADVLKSQGLSLQRCITSIN 237 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 H D LI I + +FLH +R GSL VG G + L L A+ R Sbjct: 238 VHRDYVLGEQLICIDIEGNAFLHNMVRIIAGSLLEVGRGARSVAWLGDVLAARTRTAAAQ 297 Query: 233 LAPPEGLYFDSVEY 246 AP GL + V Y Sbjct: 298 TAPACGLTLEHVAY 311 >gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1] gi|166228738|sp|A3CXX4|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1] Length = 270 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 94/250 (37%), Gaps = 31/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA--IFLVTG--EIVVVHGAGRTDSGVHA 57 + Y G +FG Q Q + +++G A + + AGRTD GVHA Sbjct: 1 MNLAFRFSYFGDRFFGSQMQPDLCTVEGEFIGACRLLRLFDDWREANFATAGRTDRGVHA 60 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F + +ALN L I + FH R+SA+ R+Y Y Sbjct: 61 RSQVCSFLTDKP---ERAIEALNRVL--PADIWCTGWAEAPDGFHPRYSAVSRTYRYYF- 114 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 D M AAQ +GRHDF+ F +P R I V Sbjct: 115 ----------------SAPGDAAAMHEAAQEFLGRHDFSAF--ARAGDRNPERRILASRV 156 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-DRKECGPLAPP 236 G V SFL +R L VG G+ + ++ + L +R+ APP Sbjct: 157 FIDGEFAVFEVTGESFLWNMVRCMATMLGRVGRGEAEAGEIARLLTGPVERRVAA--APP 214 Query: 237 EGLYFDSVEY 246 EGL ++Y Sbjct: 215 EGLILWDIDY 224 >gi|86134196|ref|ZP_01052778.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] gi|85821059|gb|EAQ42206.1| tRNA pseudouridine synthase A [Polaribacter sp. MED152] Length = 260 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 13/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 Y + + + G + GWQ+Q N ++ ++K++ V + GAGRTD+ V A R + Sbjct: 7 YLISLGFLGFRFSGWQKQTNAKTLHDIVDKSLSFVLKDVDYKTIGAGRTDAKVSANRYLF 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + LN+ L +S V +F+ + + Y Y Sbjct: 67 QLFTNEVLQQDVFLNELNSNL--PADFKAYTVSEVATKFNIINAPKIKEYHYYFSFGAVN 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV----- 177 L+ + M+ A G H F + + + RTI+ + Sbjct: 125 HPFAAPFIVNEESELNIKLMKKGASLFEGEHYFHKYCTKPSAKTEFKRTIESCSIIENSI 184 Query: 178 ----NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGP 232 ++V + FL QIR + +L +G G + +E +L + DR+ Sbjct: 185 LTASFFPQKSYVLKVRGKGFLRYQIRLMMATLFELGKGNLSLQYIEDSLKEDNDRQFLRT 244 Query: 233 LAPPEGLYFDSVE 245 +AP GL +++ Sbjct: 245 IAPGSGLQLYTID 257 >gi|254779646|ref|YP_003057752.1| tRNA pseudouridine synthase A [Helicobacter pylori B38] gi|254001558|emb|CAX29576.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Helicobacter pylori B38] Length = 242 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEGALN-ALGIKSVVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD---- 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIARGDYGSLDLLNTA--LKQFTGKHDFSLFKKEGGATTNPNRIIFNAFAYTA 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T ++E + P+ Sbjct: 174 FIMGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|110004220|emb|CAK98558.1| hypothetical trna pseudouridine synthase a protein [Spiroplasma citri] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 6/249 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M+ + IEY+G Y GW +QKN +IQG +EKA F + + + GA +TD+GVHA Q Sbjct: 1 MLYLLLSIEYDGYDYSGWVKQKNAWTIQGELEKAFFGICHQKIWTLGASKTDAGVHASDQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L + ++ + + + + + + I Q Sbjct: 61 KVLVKLPFQSQHLVFFIKTVSKTLPPNINIKGYQLVSE---NFSVRTAKVKEYVYTINDQ 117 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTIDHFDVNS 179 + L+ + +Q VG HDF F + + RTI+ V Sbjct: 118 EYDLFNHRYELKVNTPLNVRKLHQISQIFVGTHDFGYFAGVKPTENIVTQRTINKIWVKR 177 Query: 180 FG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE-CGPLAPPE 237 IEI + +SF+ QIR ++ GK + ++L+ L+ + A P Sbjct: 178 NKAKKIEIHFMGKSFIRYQIRMLTQNILACYAGKVSLSELQAQLKHPPQGATTKYCAKPY 237 Query: 238 GLYFDSVEY 246 GL ++Y Sbjct: 238 GLCLKKIKY 246 >gi|297380269|gb|ADI35156.1| tRNA pseudouridine synthase A [Helicobacter pylori v225d] Length = 242 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVVAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L +L ++ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAQKHWNAAK----LFYHLAPKLAPHVVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQVQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|195490008|ref|XP_002092963.1| GE26463, isoform B [Drosophila yakuba] gi|194179064|gb|EDW92675.1| GE26463, isoform B [Drosophila yakuba] Length = 306 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 55/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRYH 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 AI R+YLYR + + ++ I + M Sbjct: 121 AIGRTYLYRFAVAKDPSLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAARMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVE 245 A+SFL+ Q+R VG+L +G+G+ L + L + P LAP GLY V Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDPRILLAPACGLYLCKVH 300 Query: 246 Y 246 Y Sbjct: 301 Y 301 >gi|195375299|ref|XP_002046439.1| GJ12898 [Drosophila virilis] gi|194153597|gb|EDW68781.1| GJ12898 [Drosophila virilis] Length = 513 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 101/301 (33%), Gaps = 58/301 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLV-TGEIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MRRYLLNIAYIGTNFRGIQKTVNKLEEARLDTNSVQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L + I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDNKFYDTTTLTGVLNRTLDKQNLPIRVLSTQRVPDTFHCRYH 120 Query: 107 AIRRSYLYR--------------------IITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 AI R+YLYR + +++ A Sbjct: 121 AIGRTYLYRVAVAKNVTQSNTINSLRNKGYESFVPVEEIDRCYFLQNNNFDIERLKNAAR 180 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---------------------SFGNLIE 185 L + ++ S + + + Sbjct: 181 MFLGVHDFRSFMSVSRQKSPSRDHPMFTVRKIDEINIRAGQSLALGPNATLASQIYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFD 242 I + A+SFL+ Q+R VG+L + +G+ + + L + P +AP GLY Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANGRIDERCIYEMLTIPSKHTWEPRILVAPASGLYLC 300 Query: 243 S 243 Sbjct: 301 R 301 >gi|15669871|ref|NP_248685.1| tRNA pseudouridine synthase A [Methanocaldococcus jannaschii DSM 2661] gi|3915177|sp|Q59069|TRUA_METJA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|1500579|gb|AAB99697.1| pseudouridylate synthase I (truA) [Methanocaldococcus jannaschii DSM 2661] Length = 259 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 96/249 (38%), Gaps = 33/249 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + A+ + V++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKQTVCDILLDALEETGFLAKKKVIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E + +NA LK + I + R Y Y + Sbjct: 60 VVVELKKEPILS----YINAKLKDKGIWVLGYREIDE-----IPKVKYRHYRYILPNIGY 110 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K A + + + + SPIRTI ++ Sbjct: 111 DVDAIK---------------EGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKISENE 155 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + ++ SFL +R VG+L LVG GK ++K L ++ +E P PPEGL Sbjct: 156 FYLTVDIIGESFLWNMVRKIVGALDLVGRGKKPVEWIDKLLD-ENHREGVPTFPPEGLIL 214 Query: 242 ----DSVEY 246 +EY Sbjct: 215 VEAKVDIEY 223 >gi|195012380|ref|XP_001983614.1| GH25313, isoform B [Drosophila grimshawi] gi|193897096|gb|EDV95962.1| GH25313, isoform B [Drosophila grimshawi] Length = 317 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 99/304 (32%), Gaps = 58/304 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLV-TGEIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I IL+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRYH 120 Query: 107 AIRRSYLYR--------------------IITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 A R+YLYR + +++ A Sbjct: 121 ATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAAR 180 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---------------------SFGNLIE 185 L T ++ S + + + Sbjct: 181 MFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFD 242 I + A+SFL+ Q+R VG+L + + + + + L + +AP GLY Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANSRIDERCIYQMLTIPSKHNWDSRVVVAPACGLYLC 300 Query: 243 SVEY 246 V Y Sbjct: 301 RVHY 304 >gi|51246208|ref|YP_066092.1| tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] gi|62901427|sp|Q6AKP0|TRUA2_DESPS RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA pseudouridylate synthase I 2; AltName: Full=tRNA-uridine isomerase I 2 gi|50877245|emb|CAG37085.1| related to tRNA pseudouridine synthase A [Desulfotalea psychrophila LSv54] Length = 261 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 13/258 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDS 53 M + + I Y G+ YFGWQ Q + +++G+I A+ +T + V GA RTD Sbjct: 1 MNYFRVKIAYKGTHYFGWQAQSIDTLHEEKPTVEGTILNALKKITNYQPCTVSGASRTDG 60 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTI--SILNLSIVDKQFHARFSAIRRS 111 GVHA Q+A + ++ P L LN+ L I + + + Sbjct: 61 GVHARGQIAKITISQKISPEHLLLGLNSLLPTDIRILECVPSTKEYQASRGSVSKEYHYY 120 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH----CQASS 167 ++ + A + D +R A + VGRHDF F S + Sbjct: 121 FIASPVDNVATSDIALHLPIDSIGPDDLALLRSACRLFVGRHDFYNFSSRGSGTSFREIF 180 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 ++ ++++ FL IR +G+L + G+ D+ LQ Sbjct: 181 YCDIHRANFSPLANDMFYLKIIGDGFLKYMIRYIMGALLELVRGRIVLDDISLYLQQHQE 240 Query: 228 KECGPLAPPEGLYFDSVE 245 + P A +GL+ +E Sbjct: 241 DKLSPRAKAKGLHLIRIE 258 >gi|88802196|ref|ZP_01117723.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] gi|88781054|gb|EAR12232.1| pseudouridylate synthase I [Polaribacter irgensii 23-P] Length = 260 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 13/253 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALRQVA 62 Y + +E+ G + GWQ+Q N ++ ++K++ V G GRTD+ V A Sbjct: 7 YLIRLEFLGFRFSGWQKQLNAKTVHDIVDKSLSFVFEDSAYKTIGVGRTDAKVSANAYYF 66 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 E V +LN+ + + V ++ ++ R+ Y Y Sbjct: 67 QLFRDSEIKEVSFLASLNSN--FPPDFRAITVQEVGTDYNVIQASKRKEYHYYFSFGAKN 124 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + LD + M AA+ G H F + + + R ID ++ Sbjct: 125 HPFAAPFLVNVAADLDLKKMMDAARLFEGEHYFHKYCTKPSAQTVFKRVIDVCEIVENTI 184 Query: 183 L---------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGP 232 L +RV + FL QIR + +L VG G +T + +L + DRK Sbjct: 185 LTASFFPEKSYMLRVQGKGFLRYQIRLMMATLFEVGKGTLDATFIIASLKEDNDRKFMRN 244 Query: 233 LAPPEGLYFDSVE 245 +AP GL +E Sbjct: 245 IAPSSGLQLYDIE 257 >gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545] Length = 313 Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + + + Y G GY G QR +I+ +EKAI G V A RTD Sbjct: 2 RKVAIFLAYVGKGYQGMQRNPGAVTIEDELEKAIVAAGGISDLNAGDFAKVQWMRAARTD 61 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q +V + V +NA L + V F+A+ RR Y Sbjct: 62 KGVSAVGQCVSLRMVIDPPGV--IDRVNAAL--PEGFEFFGYERVTGGFNAKTMCDRRRY 117 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS----IHCQASSP 168 Y + + + P D + + L F + + S Sbjct: 118 EYVVPVKAFDPRAKNSDDASPPFEFDETMRQRVNKILGNYVGTHNFHNFTVRVSPDEPSA 177 Query: 169 IRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +R I FD ++ + VV +SF+ QIR +G + V G W+ D AL Sbjct: 178 MRYIISFDCSAPFVVDGVAFVRCVVVGQSFMLHQIRKLIGMMLGVIRGAWSEEDQLFALN 237 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 ++ P+AP GL+ Y Sbjct: 238 TKE-SVNVPMAPELGLFLCECIY 259 >gi|317012865|gb|ADU83473.1| tRNA pseudouridine synthase A [Helicobacter pylori Lithuania75] Length = 242 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 100/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE + G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIEGTLN-ALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFHAPKHWNAAK----LFHYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SLD N + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSLDALNTA--LKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R V + K T ++E + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIVQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|47097169|ref|ZP_00234734.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] gi|47014428|gb|EAL05396.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 1/2a F6854] Length = 133 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 3/135 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY II Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRVTASGRTDTGVHAKG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD + KAL + IS L + V FHARF + + Y Y + Sbjct: 61 QVIHFDSELDITAEKFQKAL--QVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRT 118 Query: 120 QAPLALEKGRAWLIP 134 + + A P Sbjct: 119 KIFDPFSRNFALHYP 133 >gi|195135262|ref|XP_002012053.1| GI24889, isoform B [Drosophila mojavensis] gi|193918317|gb|EDW17184.1| GI24889, isoform B [Drosophila mojavensis] Length = 320 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 77/307 (25%), Positives = 118/307 (38%), Gaps = 61/307 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L S I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRYH 120 Query: 107 AIRRSYLYRI----------------------ITRQAPLALEKGRAWLIPKSLDCENMRI 144 AI R+YLYR+ P+ +L + D E + Sbjct: 121 AIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLIA 180 Query: 145 AAQHLVGRHDFTTF----RSIHCQASSPIRTIDHFDVNS------------------FGN 182 A++ L+G HD+ TF R P+ T+ D + + Sbjct: 181 ASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENYD 240 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGL 239 +I + A+SFL+ Q+R VG+L + +G+ + + L + LAP GL Sbjct: 241 YWDIEIKAKSFLYKQVRRIVGTLLALAEGRIDERCIYQMLTIPSKHSWDHRIQLAPACGL 300 Query: 240 YFDSVEY 246 Y V Y Sbjct: 301 YLCRVHY 307 >gi|94270473|ref|ZP_01291754.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93450785|gb|EAT01835.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA V Sbjct: 1 MNIKLTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F R+ LN+ L I IL V FHARFSA + Y+Y T Sbjct: 61 ASFQTARQLPLAAYRHGLNSML--PPAIRILAAREVAADFHARFSARGKIYVYGFTTAAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + + P S + ++ A L+G HDFT+F + + Sbjct: 119 ISPRRRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEAAGSRRR 163 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V FL +R+ VG+L +G GK T L + L +DR GP AP GL Sbjct: 257 YYLVVAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLTLWR 316 Query: 244 VEY 246 V Y Sbjct: 317 VLY 319 >gi|94266218|ref|ZP_01289926.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] gi|93453191|gb|EAT03652.1| tRNA pseudouridine synthase [delta proteobacterium MLMS-1] Length = 319 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + I ++G+ + GWQRQ++ +IQ ++E + + GE VV+HGAGRTD+GVHA V Sbjct: 1 MNIKLTIAFDGTAFAGWQRQRHQPTIQATLEDGLARLLGEKVVLHGAGRTDAGVHAAGMV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A F R+ LN+ L I IL V FHARFSA + Y+Y T Sbjct: 61 ASFQTARQLPLAAYRHGLNSML--PPAIRILAAREVAADFHARFSAKGKIYVYGFTTAAI 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + + P S + ++ A L+G HDFT+F + + Sbjct: 119 ISPRRRLYSAHFPGSFNPGPVQEALPGLLGEHDFTSFEAAGSRRR 163 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V FL +R+ VG+L +G GK T L + L +DR GP AP GL Sbjct: 257 YYLVVAGDGFLRHMVRNLVGTLLEIGRGKRTPESLPQLLAGRDRCRAGPTAPAHGLTLWR 316 Query: 244 VEY 246 V Y Sbjct: 317 VLY 319 >gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z] gi|166228737|sp|A2SU30|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z] Length = 281 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 30/248 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGS-----IEKAIFLVTGEIVVVHGAGRTDSGVH 56 ++ + Y G + G Q Q + +++G IE +F E AGRTD GV Sbjct: 1 MKLAFLAGYRGQNFAGSQYQPHKRTVEGEFVAGGIELGLFSDAKEA-HFRTAGRTDKGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A RQ+ + + +ALN +L D I + + VD++F+ R++A RSY Y Sbjct: 60 ARRQLFSITTEKP---ELAIEALNFHL--PDDIWCIGAAEVDEEFYPRYAARERSYRYYF 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 D M+ AA L+G H+F+ F + Sbjct: 115 P-----------------YPADVSRMQDAASRLIGTHNFSGFAKMEAGRDPVRTVTRAEV 157 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V A+SFL +R G+L+ +G G +E+ L + AP Sbjct: 158 FEGKDGCPVFEVAAKSFLWNMVRGMAGALQTIGLGLCEPDVIEELLSSP--TARVHPAPA 215 Query: 237 EGLYFDSV 244 EGL F V Sbjct: 216 EGLVFWDV 223 >gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus corporis] Length = 410 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 89/259 (34%), Gaps = 20/259 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI---------VVVHGAGRTD 52 +++ YNGS Y G Q+ + +I+ + A+ + A RTD Sbjct: 74 RNVALLMAYNGSNYHGMQKNLDFKTIEYELLNALVKANLIPSEAIDNLPLIHFQRAARTD 133 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A +QV F + + +N +L + + + +A SY Sbjct: 134 KGVSAAKQVVSFKIAENFQVEK----INMFLPEDIRVFSIKRVTKGFNCKNQCTARTYSY 189 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 E + + I K + I +Q+L + S R I Sbjct: 190 TLPTFALAPEFHDEYPKNYRIDKLTIQKTNEILSQYLGTHPFHNFTSKKDGRDPSAKRYI 249 Query: 173 DHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F+ + + I ++V +SF+ QIR VG V G + K + Sbjct: 250 MSFEAEEPFLENEEEFITLKVKGQSFMLHQIRKMVGYTIAVMKGFASEAIQSKIWTNEKV 309 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP GL + V Y Sbjct: 310 SL--PMAPGLGLVLEDVHY 326 >gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Candidatus Methanoregula boonei 6A8] gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8] Length = 276 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 90/247 (36%), Gaps = 30/247 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHA 57 +R + Y G+ ++G Q+Q++ +++G +A + AGRTD GVHA Sbjct: 15 VRLACRVSYLGTRFYGSQQQESSRTVEGEFIEACRRLALFSDWRTAGFASAGRTDRGVHA 74 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV F P +ALN+ L I ++V FH R+ A R+Y Y Sbjct: 75 CGQVIAFST---QTPDRARQALNSQL--PPDIWCTATAVVPDHFHPRYDARSRTYRYYFG 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + A + N +P R I + Sbjct: 130 EPPRDPVAMETAAREFSGDHNFTNFA------------------RVGDKNPWRKILEIRI 171 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-QAQDRKECGPLAPP 236 + G+ + V A+SFL Q+R + G G+ + + L +A R AP Sbjct: 172 GTEGSFTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLLLNEAASRP--IQPAPA 229 Query: 237 EGLYFDS 243 EGL Sbjct: 230 EGLVLWD 236 >gi|242083078|ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] gi|241942657|gb|EES15802.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor] Length = 387 Score = 108 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 13/199 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 66 QRYLVAVEYIGTRFSGSQQQPNQRTVVGVLEEAFHRFIGQPVSIFCSSRTDAGVHALSNV 125 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L ++ I + ++ V FHAR+ A+ Sbjct: 126 CHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKNEGDIMVTDVRCVAPDFHARYKALE 185 Query: 110 RSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ ++ E AW I + LD + M+ A LVG HDF++FR+ CQA+SP Sbjct: 186 RTYHYRLLSGPESTSVFETNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGCQANSP 245 Query: 169 IRTIDHFDVNSFGNLIEIR 187 +RT+D V + Sbjct: 246 MRTLDELSVTEVFPFMFFP 264 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG LK VG G T+ D+E+ L A+ +AP GLY Sbjct: 318 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPRMAPAYGLY 377 Query: 241 FDSVEY 246 +V+Y Sbjct: 378 LANVKY 383 >gi|254756839|ref|ZP_05208867.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 185 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 3/177 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+G + G+Q Q ++Q IEKA+ + GE+V V +GRTDS VHA Sbjct: 6 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 65 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD ALN L D I I + ++FHAR+ R+ Y YR++ Sbjct: 66 QVIHFDTPLSLEEWQWSNALNTML--PDDIVITQVEKKTEEFHARYGVERKEYRYRVLVS 123 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + P L+ ++R A + +G HDFT+F S +RTI + Sbjct: 124 KTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIE 180 >gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 442 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 19/260 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVV------HGAGRTD 52 + + + YNG Y G QR +I+ + +A++ + E V V A RTD Sbjct: 71 KKMALCMSYNGKDYLGMQRNPGTKTIEDDLLQAMYKGDLILKEHVDVPQAMKFQRAARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+RQ+ L + +N++L D I ++++ + F+ + S R+Y Sbjct: 131 KGVSAVRQIVSLKLPTNLTVEEMVDKINSHLV--DQIRVIDIKRTTRGFNCKNSCDSRTY 188 Query: 113 LYRIITRQAPL---ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y + T E+ + + N+ + H+FT+ + ++ Sbjct: 189 TYVLPTFAFAPPESPAEESYRITEERIGEVNNVLALYKGCHNYHNFTSGKKSEDPSAMRY 248 Query: 170 RTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 E ++ +SF+ QIR VG + + G T + +A Sbjct: 249 IISAECAQPFVQGDQEFVQVQIKGQSFMLHQIRKMVGLVIAIMRGCTKETTIRRAW--GP 306 Query: 227 RKECGPLAPPEGLYFDSVEY 246 K P+AP GL + V Y Sbjct: 307 EKLDLPIAPALGLMLEEVHY 326 >gi|315304909|ref|ZP_07875014.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626716|gb|EFR95744.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 127 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M RY +I Y+GSG++G+Q Q N ++Q IEKA+ + G+ V V +GRTD+GVHA Sbjct: 8 MTRYKAVISYDGSGFYGYQVQPNTRTVQAEIEKALKKMHKGKSVRVTASGRTDTGVHAKG 67 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD KAL + IS + + FHARF + + Y Y I Sbjct: 68 QVIHFDSELAISAEKFQKAL--QVMTPFDISFITVEETPADFHARFGTVGKEYRYIIKRY 125 Query: 120 QA 121 Sbjct: 126 CV 127 >gi|194699074|gb|ACF83621.1| unknown [Zea mays] Length = 414 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 107/283 (37%), Gaps = 41/283 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGAGR 50 + ++I Y+G + GWQ+Q +++QG +EK + E AGR Sbjct: 121 FKVVISYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGR 180 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV AL+QV F R+ V K D + L++S V ++FH F+A R Sbjct: 181 TDKGVTALQQVCSFYTWRKDVKSGDIKGAI-NEAAPDKLKPLHVSEVSREFHPNFAAKWR 239 Query: 111 SYLYRIITR----------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 Y+Y Q+ LE + P+S D + + L G+ + Sbjct: 240 RYMYIFPLDEDADLILGEAQSSKTLENSEHNIKPQSFDVSKVDEILKPLAGKTLSYKMFA 299 Query: 161 IHCQASSPIRTIDHFDVNSF-----------------GNLIEIRVVARSFLHTQIRSFVG 203 QAS + + ++ + +VA FL +R V Sbjct: 300 RDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKGGMVVMCVELVANRFLRKMVRVLVA 359 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L ++A DR+ P APPEGL V Y Sbjct: 360 TAIREAAAGAGADALLNLMEATDRRATAPPAPPEGLCLVDVGY 402 >gi|157137669|ref|XP_001657123.1| hypothetical protein AaeL_AAEL003683 [Aedes aegypti] gi|108880780|gb|EAT45005.1| conserved hypothetical protein [Aedes aegypti] Length = 325 Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 112/299 (37%), Gaps = 53/299 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + + Y G+ + G Q+ ++ S++G +E A+ + + RT Sbjct: 1 MNRYLINLSYIGTHFRGIQKNLLKDSGYLEDPHSVEGVLEIALKKFAPVNEFKIKLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L + I IL+ +V HAR Sbjct: 61 DAGVHALHNTVHVDLERPSGKPYKTYKLTQGLNRTFGSQGLPIRILDTKLVPMSCHARLC 120 Query: 107 AIRRSYLYRI---------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 A R+YLYR+ R P+ ++ K D E ++ A G Sbjct: 121 AKSRTYLYRLGVLRPQYCDKVESHPFNRFVPIDEYDRCYFIAHKHFDIERLKRVASTFQG 180 Query: 152 RHDFTTFRSIHCQASSPIRT---------------------IDHFDVNSFGNLIEIRVVA 190 HDF TF S+ + + + +IR+ Sbjct: 181 YHDFRTFMSVARGNDRQHDPSFTLRTIEHISIDRGISMASAFNREQAERYYDYWDIRIKG 240 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKEC--GPLAPPEGLYFDSVEY 246 RSFL+ Q+R VG+ + + + D+ + L R C +AP GL+ VEY Sbjct: 241 RSFLYKQVRRMVGAWIGAAENRLSERDIYRMLTVPSQRSWCDQAVVAPAYGLFLCRVEY 299 >gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 308 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 89/259 (34%), Gaps = 22/259 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 + Y G+GY G QR +I+G +E AI G V A RTD GV Sbjct: 6 AVTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAARTDKGV 65 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV P + + +NA L + + + V F+A+ RR Y Y Sbjct: 66 SAVGQVVAL--KMVLEPSGMVERINAAL--PERFEVFGIDRVTGGFNAKTMCDRRRYEYV 121 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMR--------IAAQHLVGRHDFTTFRSIHCQASS 167 I TR L A + R + + Sbjct: 122 IPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYCGTHNFHNYTVKVKPTDAQAKRYI 181 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + +VV +SF+ QIR +G++ V G+ T D + AL + Sbjct: 182 ISFECSAPFEVEGEQFVRCQVVGQSFMLHQIRKLIGTMLAVVRGELTEDDQKFALLTHEF 241 Query: 228 KECGPLAPPEGLYFDSVEY 246 P+AP GL+ Y Sbjct: 242 VPT-PMAPELGLFLCECIY 259 >gi|219120077|ref|XP_002180785.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407501|gb|EEC47437.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 347 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 101/305 (33%), Gaps = 62/305 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---------------------KNGSSIQGSIEKAIFLVTG 40 +RY + Y+G+ + G+Q Q K ++QG +E + Sbjct: 37 VRYRARVAYDGTSFQGFQIQGSNKVVDDKNCNGITHQNRKDKQQRTVQGELETVLSTRWN 96 Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL---CKALNAYLKISDTISILNLSIV 97 + V V AGRTD+GVHA Q HFD+ P ++L L T+ L + Sbjct: 97 QPVRVVAAGRTDAGVHARGQAIHFDVNVSETPTDHASLERSLARMLPTDVTLWNLQFAPS 156 Query: 98 DKQ-----------FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 + ++ + + Y YR+ T L + W + Sbjct: 157 ARTKLVDGQERVLPWNVMYDNTHKLYSYRLSTAAVMDPLSRQHRWHPDNVDAYVVGKAGL 216 Query: 147 QH----LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE------------IRVVA 190 L FR+ + D I V Sbjct: 217 AQLTRLLKHYEGTHDFRAFASAMEQLEKHSDGPIDTVRTVYSVNVVPEANEGDVRIDFVL 276 Query: 191 RSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECG--------PLAPPEGLYF 241 + L+ Q+R+ VG++ G+ +D+ + LQ D G APP+GL Sbjct: 277 KGALYKQVRNMVGTVLETCRGEIMKESDMLRLLQ--DATASGLSRADNPSKPAPPQGLTL 334 Query: 242 DSVEY 246 ++V + Sbjct: 335 ENVYF 339 >gi|226496511|ref|NP_001146958.1| pseudouridylate synthase [Zea mays] gi|195605848|gb|ACG24754.1| pseudouridylate synthase [Zea mays] Length = 386 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 13/199 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 65 QRYLVAVEYIGTRFSGSQKQPNQRTVTGVLEEAFHRFIGQPVSIIFSSRTDAGVHALSNV 124 Query: 62 AHFDLVR-----------EWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ R P ++ +A+N +L S+ I + ++ V FHAR+ ++ Sbjct: 125 CHVDVERISKRKPGEVLTPHEPGVVKRAVNHFLLKSEGDIMVTDVCCVAPDFHARYKSLE 184 Query: 110 RSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR++ ++ EK W I + LD ++M+ A LVG HDF++FR+ CQA+SP Sbjct: 185 RTYHYRLLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSP 244 Query: 169 IRTIDHFDVNSFGNLIEIR 187 +RT+D V + Sbjct: 245 VRTLDELSVTEVFPFMFFP 263 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG LK VG G T+ D+E+ L A+ +AP GLY Sbjct: 317 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLY 376 Query: 241 FDSVEY 246 +V+Y Sbjct: 377 LANVKY 382 >gi|317009700|gb|ADU80280.1| tRNA pseudouridine synthase A [Helicobacter pylori India7] Length = 242 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 12/250 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G VV AGRTD GVHA Q Sbjct: 1 MRCFKTTIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSVVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F + W L YL I+ + +K FHARF A +R+Y Y + Sbjct: 60 VLSFYAPKHWNAAK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRAYRYLLTKNL 115 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF----D 176 L A SL + A + G+HDF+ F+ ++P R I + Sbjct: 116 KTPFLAPYIACGDYGSL--VALNTALKQFTGKHDFSMFKKEGGATTNPKRAIFNAFAYKT 173 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + +++ +FL + +R + + K T +++ + P+ Sbjct: 174 FIIGHECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIQAQIHNIKAAIRTPIM-A 232 Query: 237 EGLYFDSVEY 246 GLY V Y Sbjct: 233 NGLYLHRVYY 242 >gi|118374735|ref|XP_001020555.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89302322|gb|EAS00310.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 309 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 100/277 (36%), Gaps = 32/277 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 ++Y Y G Y G+Q Q K SIQ +++ A+ +T + +H + RTD GV+A Sbjct: 15 VKYLATCSYIGMNYSGFQTQILNGKRIPSIQDALQDALKKITKQDTPIHTSSRTDQGVNA 74 Query: 58 LRQVAHFDLVREWVPV-----ILCKALNAYLKISDTISIL------NLSIVDKQFHARFS 106 L F + R I+ K++N +LK + + +L+ D + ++ Sbjct: 75 LAHPFVFIINRNQNQKILEPSIIKKSMNMHLKDAKHQISIENIYYVHLTDFDVKANSLKK 134 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + A + + + + +D E + A Q VG H+F F S Sbjct: 135 EYNYFIEANLKDNWANTFQQHKQVTTMTERIDQEKLNQALQQYVGTHNFQNFTIKAEHIS 194 Query: 167 SPIRTIDHFDVNSFGNLIE----------IRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 + D + N I A+SFL QIR VG GK Sbjct: 195 HFGCYVRTIDSITIENYSHPFYEEAQCIKIIFKAKSFLAYQIRFMVGEALQYALGKLDFD 254 Query: 217 DLEKALQAQD-------RKECGPLAPPEGLYFDSVEY 246 K L + A P GL V+Y Sbjct: 255 SFLKLLDPPKELTPQEVHENNRIRAQPRGLMLKRVDY 291 >gi|153824082|ref|ZP_01976749.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] gi|126518399|gb|EAZ75622.1| tRNA pseudouridine synthase A [Vibrio cholerae B33] Length = 205 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 2/186 (1%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD E V NA L I++ V +FHARFSA R Y Y I Sbjct: 1 MVHFDTTAERQMVAWTMGANANL--PKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHV 58 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + LD E M+ A Q+L+G +DFT+FR++HCQ+ SP R + H +V Sbjct: 59 YRPGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPWRNVMHLNVTRH 118 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + I + A +F+H +R+ GSL VG G+ ++ L +DR A EGLY Sbjct: 119 GRYVVIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLLAQKDRTLAAATAKAEGLY 178 Query: 241 FDSVEY 246 SV+Y Sbjct: 179 LVSVDY 184 >gi|219123859|ref|XP_002182234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406195|gb|EEC46135.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 308 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 94/309 (30%), Gaps = 63/309 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ--------------KN-----------GSSIQGSIEKAI 35 M Y +I+ Y+G+ + G+QRQ + ++Q +E+A+ Sbjct: 1 MPLYKLIVAYDGTRFNGFQRQSTTTDMSKKIALKRPHWDSATGKRKGIALTVQECLEQAL 60 Query: 36 FLVTGEIVVVHG-----AGRTDSGVHALRQVAHFDLVR---EWVPVILCKALNAYLKISD 87 TG V AGRTD GVHA QV L + KALN+ L + Sbjct: 61 MDWTGNETNVEAFRFRFAGRTDKGVHARGQVVAVQLPIVVEPTELWRVHKALNSRLPVDI 120 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 ++ + L F R + Y Y I R+ E + + + Sbjct: 121 SVERVELCENQLDFDPRHDVQSKQYSYTIKFRRKAYNEEGQLLPICTSGPQSARSAMDSP 180 Query: 148 HLVG----------RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI----------- 186 L + H S R + + Sbjct: 181 CLWLCPWVLDDSKLYELCQRLQGQHSFRSFVHRADRNLRDHILTLDRVWVEALSCTREDA 240 Query: 187 -------RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEG 238 A+ F + +R+ VG V G + + + D AP G Sbjct: 241 PVVTVRLWFQAKGFRRSMVRNLVGFCVDVCRGMYQPDW-DALWEGSDEIAQKVHSAPACG 299 Query: 239 LYFDSVEYS 247 L +SV YS Sbjct: 300 LCLESVAYS 308 >gi|292655987|ref|YP_003535884.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] gi|291370921|gb|ADE03148.1| tRNA pseudouridine synthase A [Haloferax volcanii DS2] Length = 283 Score = 106 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 91/252 (36%), Gaps = 32/252 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 +R + Y+G Y G+QRQ + +++ +I A + E AGRTD+GV Sbjct: 1 MR-AFRVAYDGRPYHGFQRQPDVPTVEDAIFDACRALGVCDDDEEPTDYAAAGRTDAGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q F+ +ALN+ L T+ + FHAR RR Y+Y + Sbjct: 60 ALAQTVAFECPDW----CTPRALNSEL--PGTVRAWADADAPDDFHARHWPTRREYVYDL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 ++ +A D + ++ R Sbjct: 114 HAPTEGFDDDRAKAAFDACRGDHD---------FRNLTPDDHGTVRAIDGGLTRDG---- 160 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLA 234 + + +RV A F +R V ++ VG + ++ AL D E A Sbjct: 161 -----DFLLVRVEAGGFARELVRRLVSLVRAVGSDAAPLSKVDDALGPDHLDGPEGIAPA 215 Query: 235 PPEGLYFDSVEY 246 PP L +V+Y Sbjct: 216 PPTPLLLTAVDY 227 >gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 531 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 101/271 (37%), Gaps = 30/271 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSG 54 + + Y+G+ Y G Q+ +I+ +EKAIF V G + RTD G Sbjct: 132 VAICVGYSGTNYRGMQKNPGFPTIEDELEKAIFKVGGISPDNMYCHRKIDWIRCARTDKG 191 Query: 55 VHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A+R + L + + K A+NA L + I + + V+ FHA+ RRSY+ Sbjct: 192 VSAIRNMVSCKLEYDPPTLDEMKTAINAQL--PNDIRVFAIKRVNNTFHAKNCVDRRSYI 249 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV----GRHDFTTFRSIHCQASSPI 169 Y T + + L H++T+ + + ++ Sbjct: 250 YITPTFAFEPIFANNKPAQYKFDELERTRLNSLLKLFVGTRKYHNYTSKKESNDPSAVRT 309 Query: 170 RTIDHFDVNSFGNLIE---IRVVARSFLHTQIRSFVGSLKLVGDG---------KWTSTD 217 +E I +V +SF+ QIR +G + + Sbjct: 310 VNSFECSEPFMNEGVELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSESDEAALSK 369 Query: 218 LEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 ++K ++A R+ P+AP GL D Y Sbjct: 370 MKKLVEATFAHRQFNLPMAPGAGLLLDRCLY 400 >gi|270719040|ref|ZP_06223281.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270315483|gb|EFA27724.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 96 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 46/90 (51%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEYNG Y+GWQRQ+ S+Q +EKA+ + E + + AGRTDSGV QV Sbjct: 1 MKIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSCIANEKIEIFCAGRTDSGVSGTGQV 60 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISI 91 HF+ NA L +S Sbjct: 61 VHFETNAVRPEKAWAFGTNANLPDDIAVSW 90 >gi|15790870|ref|NP_280694.1| tRNA pseudouridine synthase A [Halobacterium sp. NRC-1] gi|169236616|ref|YP_001689816.1| tRNA pseudouridine synthase A [Halobacterium salinarum R1] gi|24212587|sp|Q9HNP6|TRUA_HALSA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|229470757|sp|B0R6V1|TRUA_HALS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|10581435|gb|AAG20174.1| pseudouridylate synthase I [Halobacterium sp. NRC-1] gi|167727682|emb|CAP14470.1| tRNA-pseudouridine synthase A [Halobacterium salinarum R1] Length = 266 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 88/254 (34%), Gaps = 35/254 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 M R + Y+G Y G+QRQ + S++ G + A+ + + AGRTD+GV Sbjct: 1 MPRRAFRVAYDGRPYHGFQRQPDVSTVAGELFGALRRLDVFDGAKPPGYAAAGRTDAGVS 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q FD P AL D I + + +FHA A+ R+Y+Y Sbjct: 61 ARAQTVAFDAPAWLTPDAFTGAL------PDPIQVWAHADAPPEFHATHDAVARTYVYYW 114 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + A L G HDF ++ Sbjct: 115 YAPDSRATDD--------------RAAGALDRLTGTHDFHNL----TPNTTNTVRELDAT 156 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG----P 232 ++ G I V A F +R V SL + + ++ L D G P Sbjct: 157 LDRDGAFRVITVRAGGFCRELVRRVV-SLVQLVTETGDTDRIDTVL--GDEPVAGPDGVP 213 Query: 233 LAPPEGLYFDSVEY 246 A P L +V Y Sbjct: 214 PADPHPLVLHAVAY 227 >gi|269976928|ref|ZP_06183902.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] gi|269934759|gb|EEZ91319.1| tRNA pseudouridine synthase A [Mobiluncus mulieris 28-1] Length = 326 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 46/79 (58%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKAL 79 VAHFDL ++ L A Sbjct: 61 VAHFDLPDQFSGDWLRDAH 79 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 68/153 (44%), Gaps = 1/153 (0%) Query: 95 SIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 V F ARFSA+ R Y Y +I A L + W L+ M A+ L+G H Sbjct: 152 RPVPDAFDARFSALARHYEYLVIDEPTARNPLTRNTCWWYGAPLNVARMHEASAGLLGTH 211 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DF F A++ I V A +F H+ +RS VG+L VG GK Sbjct: 212 DFAAFCKPREGATTIRTLKQLGVSRLAPGEIRFDVAADAFCHSMVRSLVGALTEVGRGKR 271 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LE+AL + R PLAP +GL V+Y Sbjct: 272 DADWLEQALHSAVRIPEIPLAPAQGLTLVRVDY 304 >gi|227876165|ref|ZP_03994281.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|306819440|ref|ZP_07453147.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] gi|227843126|gb|EEJ53319.1| tRNA-pseudouridine synthase I [Mobiluncus mulieris ATCC 35243] gi|304647732|gb|EFM45050.1| tRNA pseudouridine synthase A [Mobiluncus mulieris ATCC 35239] Length = 326 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 46/79 (58%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKAL 79 VAHFDL ++ L A Sbjct: 61 VAHFDLPDQFSGDWLRDAH 79 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 68/153 (44%), Gaps = 1/153 (0%) Query: 95 SIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 V F ARFSA+ R Y Y +I A L + W L+ M A+ L+G H Sbjct: 152 RPVPDAFDARFSALARHYEYLVIDEPTARNPLTRNTCWWYGAPLNVARMHEASAGLLGTH 211 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DF F A++ I V A +F H+ +RS VG+L VG GK Sbjct: 212 DFAAFCKPREGATTIRTLKQLGVSRLAPGEIRFDVAADAFCHSMVRSLVGALTEVGRGKR 271 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LE+AL + R PLAP +GL V+Y Sbjct: 272 DADWLEQALHSAVRIPEIPLAPAQGLTLVRVDY 304 >gi|213622913|ref|ZP_03375696.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 91 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 34/81 (41%), Positives = 45/81 (55%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH QV Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAGRTDAGVHGTGQVV 70 Query: 63 HFDLVREWVPVILCKALNAYL 83 HF+ +NA L Sbjct: 71 HFETTALRKDAAWTLGVNANL 91 >gi|307701658|ref|ZP_07638674.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] gi|307613161|gb|EFN92414.1| tRNA pseudouridine synthase A [Mobiluncus mulieris FB024-16] Length = 340 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 46/78 (58%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R I Y+G + GW RQ ++QG++E A+ ++ + V + AGRTD+GVHA Q Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 61 VAHFDLVREWVPVILCKA 78 VAHFDL ++ L A Sbjct: 61 VAHFDLPDQFSGDWLRDA 78 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 67/147 (45%), Gaps = 1/147 (0%) Query: 101 FHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFSA+ R Y Y +I A L + W LD M A+ L+G HDF F Sbjct: 158 FDARFSALARHYEYLVIDEPTARNPLTRNTCWWYGAPLDVARMHEASAGLLGTHDFAAFC 217 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 A++ I V A +F H+ +RS VG+L VG GK + LE Sbjct: 218 KPREGATTIRTLKQLGVSRLAPGEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLE 277 Query: 220 KALQAQDRKECGPLAPPEGLYFDSVEY 246 +AL + R PLAP +GL V+Y Sbjct: 278 QALHSAVRIPEIPLAPAQGLTLVRVDY 304 >gi|256810921|ref|YP_003128290.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] gi|256794121|gb|ACV24790.1| tRNA pseudouridine synthase A [Methanocaldococcus fervens AG86] Length = 259 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 93/249 (37%), Gaps = 33/249 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + + + +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKQTVCDILLDTLENTDFLAKKKIIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E + +NA LK + I + R Y Y + Sbjct: 60 VVLELKKEPILS----YINAKLKSKGIWVLGYREIDE-----IPKVKYRYYRYILPNINY 110 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K A + + + + SPIRTI ++ Sbjct: 111 NVDAIK---------------EGAKKMIGTHSFHNLSKRDRTKEKSPIRTIYDIKISENE 155 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I ++ SFL +R VG+L L+G GK ++K L R E P PP+GL Sbjct: 156 FYLTIDIIGESFLWNMVRKIVGALDLIGRGKKPVEWIDKLLDENYR-EGVPTFPPDGLIL 214 Query: 242 ----DSVEY 246 V+Y Sbjct: 215 VEAKVDVDY 223 >gi|237751255|ref|ZP_04581735.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] gi|229372621|gb|EEO23012.1| tRNA pseudouridine synthase A [Helicobacter bilis ATCC 43879] Length = 253 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 16/255 (6%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 II Y+GS + G+ QK+ S+ E + + G + G+GRTD VHA Sbjct: 4 NIVCIIAYDGSKFCGFSHQKHTKGVLSVANFFELTLQKI-GIKAKIIGSGRTDKDVHATN 62 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV +F + K LN L I + ++ + +YR + Sbjct: 63 QVINFHAKLYMPLDKMKKLLNDRLYPFVLIKRIFIADSSFHARF----SAKLRIYRYVFT 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN- 178 QA L + D ++ A +G HDF+ F+ + IRTI + Sbjct: 119 QAELLPFYSNYIAKVRHGDISLLQTALNEFIGTHDFSLFKKNGSETKDFIRTIVKAHIFP 178 Query: 179 ---SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ---DRKECG- 231 + + A FL +Q+R + + G+ T +L + +Q ++ C Sbjct: 179 AKIHNISCFVAHIGANGFLRSQVRIMLKACFEFSLGRITLQNLVRQIQNDITLEKSLCVR 238 Query: 232 PLAPPEGLYFDSVEY 246 LAP GLY + Y Sbjct: 239 ELAPACGLYLHRIIY 253 >gi|289192063|ref|YP_003458004.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] gi|288938513|gb|ADC69268.1| tRNA pseudouridine synthase A [Methanocaldococcus sp. FS406-22] Length = 262 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 33/247 (13%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQVAH 63 + I Y+G Y +Q+Q + ++ + + + + +++ GRTD GV AL Sbjct: 8 LKIAYDG-RYS-FQQQPHKQTVCDILLDTLEEIDFLAKKKIIYSGGRTDKGVSALGNFVI 65 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 +L +E + +NA LK + I + R Y Y + + Sbjct: 66 VELKKEPILS----YINAKLKDKGIWVLGYREIDE-----IPKVKYRHYRYILPNINYNI 116 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 K A + + + + SPIRTI ++ Sbjct: 117 DAIK---------------EGAKKMIGTHSFHNLSKRDKSKEKSPIRTIYDIKISENEFY 161 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF-- 241 + I ++ SFL +R VG+L LVG GK + K L ++ +E P PP+GL Sbjct: 162 LTIDIIGESFLWNMVRKIVGALDLVGRGKKPVDWIGKLLD-ENHREGVPTFPPDGLILVE 220 Query: 242 --DSVEY 246 V+Y Sbjct: 221 AKVDVDY 227 >gi|240167785|ref|ZP_04746444.1| tRNA pseudouridine synthase A [Mycobacterium kansasii ATCC 12478] Length = 248 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 16/230 (6%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE--------------WVPVILC 76 ++ A+ + + + AGRTD+GVHA QVAH D+ + L Sbjct: 2 LDAALTTIFRTPIRLRAAGRTDAGVHASGQVAHADVPVDALPNAYSHSVRAGHPEFRPLV 61 Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 + L+ +L + + + D Y L + Sbjct: 62 RRLSRFLPSDVRVIDIVRAPRDFDARFSALCRHYVYRLSTAPYGVVPQLARYVTAWPRDL 121 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 + + L R + IR + D G+L+ V A +F + Sbjct: 122 DVEAMTIASRELLGLHDFAAFCRHRDGATT--IRDLQRLDWARDGDLVTAHVTADAFCWS 179 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +RS VG++ VG+ + ++ + L A R AP GL V+Y Sbjct: 180 MVRSLVGAVLAVGEHRRSTAWCRELLTATGRSSDFAAAPAHGLTLVQVDY 229 >gi|257387360|ref|YP_003177133.1| tRNA pseudouridine synthase A [Halomicrobium mukohataei DSM 12286] gi|257169667|gb|ACV47426.1| tRNA pseudouridine synthase [Halomicrobium mukohataei DSM 12286] Length = 263 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 33/251 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 +R I Y+G Y G+QRQ + +++G + + + AGRTD+GV A Sbjct: 1 MR-AYRIAYDGQPYHGFQRQPDVETVEGELLATLDRLGVTAGDVPAGYAAAGRTDAGVSA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q F+ P A N+ L ++ + + V FHA A R Y+Y + Sbjct: 60 LAQTVAFEAPEWLSPA----AFNSEL--PASVRVWASADVPDDFHATHDAREREYVYYLY 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + A + D N+ V D+ Sbjct: 114 APERHDDRARRAADALSGEHDFHNLTPDDSGTVR--------------------ALSIDL 153 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAP 235 G + R+ A F +R VG + + G + +++ L ++ D A Sbjct: 154 TREGEFLVCRLRAGGFCRQLVRRVVGLVDEIRRGDAPLSKVDRVLGSKPIDGAAGVGPAS 213 Query: 236 PEGLYFDSVEY 246 P L +V+Y Sbjct: 214 PTPLVLVAVDY 224 >gi|115756434|ref|XP_001202324.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115938206|ref|XP_796203.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 494 Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 97/260 (37%), Gaps = 22/260 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGE-------IVVVHGAGRTD 52 + +++ Y G+ Y G QR +I+ + A+ E + RTD Sbjct: 71 RKVAILLSYAGANYVGMQRNPGVQTIEEDLVNALVKSGAIPEDCGRNMNKMSFQRCARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV + + L + +N +L I ++ ++ F+ + + R+Y Sbjct: 131 KGVSAAGQVVSLKV---LMLDNLMERINEHL--PPVIRVMGVTRTTGGFNCKNNCEFRTY 185 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS----- 167 +Y I T + E + + +G H+F F S Sbjct: 186 MYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIGTHNFHNFTSGKAFTDPSANRY 245 Query: 168 -PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T + V+ I+V +SF+ QIR +G + V G + +E+A Q Sbjct: 246 IKEFTCEKGFVDDGMEFAVIKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVERAFQEP- 304 Query: 227 RKECGPLAPPEGLYFDSVEY 246 K P AP GL ++V Y Sbjct: 305 -KLDIPRAPGLGLVLEAVHY 323 >gi|221115363|ref|XP_002163885.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 446 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 87/280 (31%), Gaps = 43/280 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--------------EIVVVHG 47 + +++ Y G+ Y G Q+ + +I+ + A+ + + Sbjct: 90 RKVALLLAYCGANYSGMQKNPDVETIEEKLLDALCEMKAIRAEHKHEFLVNNVNQISFQR 149 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A RTD GV A RQ + + K L D I + L V K F+A+ Sbjct: 150 AARTDKGVSAARQTVSLKITSNTFLEDVNKLL------PDDIRVFGLERVTKSFNAKCCC 203 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN-------------------MRIAAQH 148 R+Y Y + + + + + + + Sbjct: 204 SGRAYEYLVPSFAFAPSNDVNFFVFVYRFFLHHIGFQKFISDEQFAKLNRLFSCYEGTHN 263 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 F + I I + +SF+ QIR +G + V Sbjct: 264 FHNFTSGKPFSDQSANRYIISFKANKPFECQGHEFIAIEISGQSFMIHQIRKMIGLVIAV 323 Query: 209 GDGKWTSTDLEKA-LQAQDRKECGPLAPPEGLYFDSVEYS 247 G +EK+ LQA+ P AP GL V Y+ Sbjct: 324 CRGHCPEDTIEKSWLQAK---ADIPKAPGLGLLLCKVFYN 360 >gi|65317910|ref|ZP_00390869.1| COG0101: Pseudouridylate synthase [Bacillus anthracis str. A2012] Length = 175 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 3/175 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M Y + I+Y+G+ + GWQR N ++IQG IE I + G+ + G RTD+GVHAL Sbjct: 1 MNNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKETEIIGCSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QVA+F + V + K LN YL + ISI N+ V +FHAR+++ ++YLY+I Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYL--PNDISITNVEEVHDRFHARYNSKAKTYLYKIWNE 118 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + + + K L+ ++M+ AA+HLVG HDFT F + + S H Sbjct: 119 EHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSMQNQRKSLWYEKYIH 173 >gi|256371245|ref|YP_003109069.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] gi|256007829|gb|ACU53396.1| tRNA pseudouridine synthase [Acidimicrobium ferrooxidans DSM 10331] Length = 294 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 5/247 (2%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 +++ Y+G + G Q ++ G++ A+ LV + AGRTD+GVHA Q+ Sbjct: 7 LLLVVGYDGREFAGAAPQPGVRTVVGALRSALELVLQRPTSLAIAGRTDAGVHARAQLVS 66 Query: 64 FDL-VREWVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 L E + + L L + + + ++ AR A R YLYR+ Sbjct: 67 VPLQPGERARLGDVERLCGRLGRLAGRGLWVRSAGVLPGSVDARRVARWRHYLYRLDLGH 126 Query: 121 APLALEKGRAW--LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 L+ + + A L G D T R + Sbjct: 127 GDRRGRVILEPTAWACGPLELDVLAGALATLRGDLDATGLCRAGAAGGYRRRVLSTRVWA 186 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +++ V+ SF H +R VG+ V G+ + + +R +APP G Sbjct: 187 RARDRVDVSVIGVSFCHEFVRRAVGNAVAVAQGRLDGERWREGVDRGERALLATVAPPWG 246 Query: 239 LYFDSVE 245 L V Sbjct: 247 LSLWRVG 253 >gi|110667083|ref|YP_656894.1| tRNA pseudouridine synthase A [Haloquadratum walsbyi DSM 16790] gi|109624830|emb|CAJ51238.1| tRNA-pseudouridine synthase [Haloquadratum walsbyi DSM 16790] Length = 276 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 36/254 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSG 54 +R + Y+G + G+QRQ + +++ ++ A+ + + AGRTD+G Sbjct: 5 MR-AFRLAYDGRPFSGFQRQPSVPTVEDALFDALDSLDVFNRDTDSKPSGYAAAGRTDAG 63 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V ALRQ F+ +ALN+ L ++ + V FHA A++R+Y Y Sbjct: 64 VSALRQTVGFECPSW----CTPRALNSEL--PTSVRAWASADVQSGFHATHDALQRTYTY 117 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + LD + AA+ L G+HDF F S + + Sbjct: 118 YL----------------YGPELDMNRLNTAAEILSGKHDFHNFTSDDDGTTRKLSITLE 161 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--QDRKECGP 232 FD I R+ A F + IR + +L+ VG T L L Q + P Sbjct: 162 FD----DPFITARITADGFPRSLIRRLMSALRGVGSESMTIETLTGLLNTVPQTGPDGIP 217 Query: 233 LAPPEGLYFDSVEY 246 A PE L V Y Sbjct: 218 TASPEPLILTRVTY 231 >gi|218186563|gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group] Length = 391 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 13/186 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 71 QRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNV 130 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ Sbjct: 131 CHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALE 190 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP Sbjct: 191 RTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSP 250 Query: 169 IRTIDH 174 +RT+D Sbjct: 251 MRTLDE 256 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG LK VG G T+ D+E+ L + P+AP GLY Sbjct: 322 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPMAPACGLY 381 Query: 241 FDSVEY 246 +V+Y Sbjct: 382 LANVKY 387 >gi|115487730|ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113648859|dbj|BAF29371.1| Os12g0194800 [Oryza sativa Japonica Group] gi|215678805|dbj|BAG95242.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616774|gb|EEE52906.1| hypothetical protein OsJ_35509 [Oryza sativa Japonica Group] Length = 391 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 107/186 (57%), Gaps = 13/186 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +E+A G+ V + + RTD+GVHAL V Sbjct: 71 QRYLVAVEYVGTRFSGSQQQLNQRTVVGVLEEAFHKFIGQPVSIFCSSRTDTGVHALSNV 130 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ ++ I + ++ V FHAR+ A+ Sbjct: 131 CHVDVERISKRKPGEMLPPHEPGVVKRAVNHFLQKNEGDIMVTDVRCVAPDFHARYKALE 190 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P EK AW IP+ L+ + M+ A LVG HDF++FR+ CQA+SP Sbjct: 191 RTYHYRLLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSP 250 Query: 169 IRTIDH 174 +RT+D Sbjct: 251 MRTLDE 256 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG LK VG G T+ D+E+ L + P+AP GLY Sbjct: 322 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPMAPACGLY 381 Query: 241 FDSVEY 246 +V+Y Sbjct: 382 LANVKY 387 >gi|261403437|ref|YP_003247661.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] gi|261370430|gb|ACX73179.1| tRNA pseudouridine synthase A [Methanocaldococcus vulcanius M7] Length = 259 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 100/250 (40%), Gaps = 35/250 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q Q + +++ + + + +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQTQPHRNTVCDKVLNTLDEIDLLERRKIIYCGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 +L +E P +NA LK + I R Y Y + Sbjct: 60 IVVELKKEPSPS----YINAKLKNEGIWVLGYREIEK-----IPEVRYRHYRYILPN--- 107 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSF 180 D E ++ A L G H F + + SPIRTI DV+ Sbjct: 108 -------------MGYDVEAIKRGASILTGTHSFHNLSKKDRTKDRSPIRTIFKIDVSEN 154 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I + + +SFL +R VG+L LVG G+ +EK L+ +D KE P PP+GL Sbjct: 155 EFYITLDIFGKSFLWNMVRKMVGALDLVGRGERPVNWIEKLLR-EDHKEGVPTFPPDGLI 213 Query: 241 F----DSVEY 246 V+Y Sbjct: 214 LVEANVDVDY 223 >gi|255571004|ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis] gi|223534233|gb|EEF35948.1| pseudouridylate synthase, putative [Ricinus communis] Length = 372 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 69/183 (37%), Positives = 103/183 (56%), Gaps = 13/183 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q NG ++ G +E+A G+ V V + RTD+GVHAL V Sbjct: 54 QRYLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNV 113 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ ++ I + ++ V FHARF A Sbjct: 114 CHVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQE 173 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR ++ P EK RAW + + LD M+ A + LVG HDF++FR+ CQA SP Sbjct: 174 RTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSP 233 Query: 169 IRT 171 IRT Sbjct: 234 IRT 236 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%) Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + + SS T F + + ARSFL+ Q+R V Sbjct: 266 NSCCKKFKTDLPMGSHSNTNVAESSFGETDLGFGIRRRHRCFVVTARARSFLYHQVRLLV 325 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G LK VG G T++D+E+ L A+ P+AP GLY V+Y Sbjct: 326 GVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARGLYLGHVKY 369 >gi|116007752|ref|NP_001036574.1| CG34140 [Drosophila melanogaster] gi|113194868|gb|ABI31225.1| CG34140 [Drosophila melanogaster] gi|238231868|gb|ACR40402.1| RE01995p [Drosophila melanogaster] Length = 306 Score = 103 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 111/301 (36%), Gaps = 55/301 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N SIQG +E A+ + + + RT Sbjct: 1 MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRIITRQAPLALEK-----------------GRAWLIPKSLDCENMRIAAQHL 149 AI R+YLYR + P + +L S D + ++ AA+ Sbjct: 121 AIGRTYLYRFAVAKVPTLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAAARMF 180 Query: 150 ---VGRHDFTTFRSIHCQASSPIRTIDHFDVNSF------------------GNLIEIRV 188 F + P+ T+ D + N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVE 245 A+SFL+ Q+R VG+L +G+G+ L + L + LAP GLY V Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH 300 Query: 246 Y 246 Y Sbjct: 301 Y 301 >gi|289597197|ref|YP_003483893.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] gi|289534984|gb|ADD09331.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Aciduliprofundum boonei T469] Length = 253 Score = 103 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 35/242 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF 64 + Y+G+ ++G+QRQK+ +++G I KA+ + + + A RTD GV AL V Sbjct: 2 LLKFAYDGTRFYGYQRQKDVPTVEGEILKALENMGIKNLK--SASRTDRGVSALGNV--I 57 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + + L LNA LK S NL I + R Sbjct: 58 WIKTDIDGKELIGRLNANLKHIYFHSFANLDINPRYARIR-------------------- 97 Query: 125 LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 R L+ D + ++ AA G HDF F + I+ DVN G++I Sbjct: 98 --WYRYHLLDMGQDMDRLKEAAMIFQGEHDFRNFTRVRKNTVIEIK---KIDVNKRGSII 152 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I R++L IR V +++ GK ++ RK G +APPE L + Sbjct: 153 TIDFYGRNYLWNLIRRIVAAMETYSLGKEFGQEIFTI-----RKNFG-IAPPEPLILMDI 206 Query: 245 EY 246 +Y Sbjct: 207 QY 208 >gi|294464718|gb|ADE77866.1| unknown [Picea sitchensis] Length = 382 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 69/200 (34%), Positives = 106/200 (53%), Gaps = 13/200 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + ++Y G+ + G Q+Q N ++QG +E A G+ V + RTD+GVHAL V Sbjct: 29 QRYLVAVDYIGTNFAGMQKQPNFRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHALTNV 88 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ ISI+++ V FHAR+ A Sbjct: 89 CHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYRAQE 148 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YRI++ + P EK RAW +P+ L M+ A + LVG HDF++FR+ CQA SP Sbjct: 149 RTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQAKSP 208 Query: 169 IRTIDHFDVNSFGNLIEIRV 188 I+ +D V + Sbjct: 209 IKILDELRVCEMPAWPAFPM 228 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + A+SFL+ Q+R VG+LK VG GK + D+E L+A+ P+AP Sbjct: 298 HRRGHRGYVVVARAQSFLYHQVRLLVGTLKCVGTGKLSVDDVESILKARTITVAPPMAPA 357 Query: 237 EGLYFDSVEY 246 GLY +V+Y Sbjct: 358 CGLYLAAVKY 367 >gi|297849290|ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] gi|297338368|gb|EFH68785.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata] Length = 373 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 13/209 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G ++ A G+ V + + RTD+GVHAL V Sbjct: 56 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQDAFHKFIGQPVKIFCSSRTDAGVHALSNV 115 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 116 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 175 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR++ P LEK R W +P+ L+ +M+ A + LVG HDF++FR+ CQA SP Sbjct: 176 RTYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQEACRVLVGYHDFSSFRAAGCQAKSP 235 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 +R +D ++ + + Sbjct: 236 MRYLDELNITEVPSTPYFPSITERAWSNL 264 >gi|149184026|ref|ZP_01862387.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] gi|148848263|gb|EDL62552.1| tRNA pseudouridine synthase A [Bacillus sp. SG-1] Length = 150 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 3/139 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVHALR 59 M R + Y+GS + G+Q Q ++Q IEKA+ + G+ V + +GRTD+GVHA Sbjct: 11 MQRIKCTVAYDGSPFAGYQVQPGKRTVQLEIEKALSAIHKGDQVKITASGRTDAGVHAKG 70 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 QV HFD LN+ L I + + V++ FHARFSA+++ Y Y + Sbjct: 71 QVFHFDTGLSIPEEKWPTVLNSKL--PPEIVVTSAEEVEEGFHARFSAVKKEYRYSVYQT 128 Query: 120 QAPLALEKGRAWLIPKSLD 138 + ++ A P L+ Sbjct: 129 KTADPFKRDFALHYPFPLN 147 >gi|322368335|ref|ZP_08042904.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] gi|320552351|gb|EFW93996.1| tRNA pseudouridine synthase A [Haladaptatus paucihalophilus DX253] Length = 263 Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 32/250 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK---AIFLVTGEIVVVHGAGRTDSGVHAL 58 +R + Y+G ++G+QRQ + +++ S+ + A+ + AGRTDSGV AL Sbjct: 1 MR-AFRVAYDGRPFYGFQRQPDVPTVEDSLFESLRALGVADRVPDGYAAAGRTDSGVSAL 59 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 Q F+ P A N+ L I + + V FHA A R Y+Y Sbjct: 60 AQTVAFECPEWLTPS----AFNSEL--PAEIRVWASADVVPAFHATHDAYYREYVYHCYA 113 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 +A L L K + + D N+ + V DV Sbjct: 114 PRANLGLAKEASDRLSGEHDFHNLTSDTEGTVR--------------------DLGIDVV 153 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPP 236 G + A F +R V + + G ++ L + D + P A Sbjct: 154 QDGEYLVFTFQAGGFARNLVRRVVSLIHSIATGDAEMAKIDTVLAPEPLDGRAGVPCASA 213 Query: 237 EGLYFDSVEY 246 LY V Y Sbjct: 214 HPLYLADVGY 223 >gi|225448126|ref|XP_002263416.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297739525|emb|CBI29707.3| unnamed protein product [Vitis vinifera] Length = 380 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 13/188 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G++++A G+ V + + RTD+GVHAL V Sbjct: 62 QRYLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSNV 121 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ ++ + ++++ V FHAR+ A Sbjct: 122 CHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKARE 181 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P + EK RAW +P+ LD M+ A + LVG HDF++FR+ CQA SP Sbjct: 182 RTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSP 241 Query: 169 IRTIDHFD 176 IRT+D Sbjct: 242 IRTLDELC 249 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG +K VG G T +D+E+ L A+ P+AP GLY Sbjct: 312 HRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACGLY 371 Query: 241 FDSVEY 246 +V Y Sbjct: 372 LGNVNY 377 >gi|312892438|ref|ZP_07751932.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] gi|311295072|gb|EFQ72247.1| tRNA pseudouridine synthase A [Mucilaginibacter paludis DSM 18603] Length = 358 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 5/199 (2%) Query: 49 GRTDSGVHALRQVAHF-DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 T+ G+ H + ++LNA L I++ + V HARF A Sbjct: 161 STTNHGLSTTSSTTHHGPSTIDHGLPQKTRSLNALL--PHDIAVKRIIPVHADAHARFDA 218 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 RSY Y + +W + D M AAQ ++ DF+ F + Q + Sbjct: 219 TLRSYEYHVH--FEKDPFLNNLSWQLRDRPDVGLMNQAAQIVMEYTDFSCFSKSNTQVKT 276 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 I + S G+ + + A FL +R+ VG+L +VG G ++ + +++++R Sbjct: 277 NNCKISRAEWVSNGDKLIFHISADRFLRNMVRAIVGTLMMVGKGDIKPEEVRRIIESKNR 336 Query: 228 KECGPLAPPEGLYFDSVEY 246 G P GLY V Y Sbjct: 337 SNAGVSVPACGLYLTEVRY 355 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 39/65 (60%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + + Y+G+ Y GWQ Q N S+Q + KA+ + V G GRTD+GVHA + Sbjct: 5 QRYFIELAYDGTNYHGWQIQHNAISVQQVLNKALSTLLRMPVETLGCGRTDTGVHAKQLY 64 Query: 62 AHFDL 66 AHFD+ Sbjct: 65 AHFDI 69 >gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940] gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940] Length = 275 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 89/252 (35%), Gaps = 34/252 (13%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSGVH 56 R I Y+G + G+QRQ + +++ +I A+ + AGRTD+GV Sbjct: 6 RRAFRIAYDGRPFHGFQRQPDVATVSDAILDALRELDVLEDGDNVPPGYAAAGRTDAGVS 65 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q FD P ALN+ L + + V +FHA A+ R Y Y + Sbjct: 66 ALAQTVAFDCPDWLSPA----ALNSEL--PADVRAWASADVPAEFHATHDAVAREYTYHL 119 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A ++ + D N V + Sbjct: 120 HAPDASVSRAGDALDALAGEHDFHNFTPDDTGTVR--------------------DLTGE 159 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP- 235 S G+ + + + A F +R V + + G +E+ L + +AP Sbjct: 160 ARSEGDFLVVTLRADGFPRQFVRRAVTVIDALASGVAELDRIEQLLGDDPVEGPAGVAPA 219 Query: 236 -PEGLYFDSVEY 246 PE L +VEY Sbjct: 220 APEALVLTAVEY 231 >gi|297742024|emb|CBI33811.3| unnamed protein product [Vitis vinifera] Length = 402 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 39/283 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +E ++ E +V AGR Sbjct: 110 FKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGR 169 Query: 51 TDSGVHALRQVAHFDLVREWVPVILC-KALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV AL+QV F ++ V V A+N + ++ + Sbjct: 170 TDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRH 229 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH---------------LVGRHD 154 Y++ + + + + S + + + L + Sbjct: 230 YFYIFPLNDGDDGEQISENEMDIQKISFNENRKKPSTFSISRVDQLLRQLEGKLLSYKIF 289 Query: 155 FTTFRSIHCQASSPIRTIDH----------FDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 ++ + H D ++ I +VA FL +R V + Sbjct: 290 ARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLRKMVRVLVAT 349 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 L K + A R+ P APP+GL V ++ Sbjct: 350 SIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFT 392 >gi|195170621|ref|XP_002026110.1| GL16086 [Drosophila persimilis] gi|194110990|gb|EDW33033.1| GL16086 [Drosophila persimilis] Length = 504 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 102/297 (34%), Gaps = 56/297 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRYH 120 Query: 107 AIRRSYLYRI-----------------------------------ITRQAPLALEKGRAW 131 AI R+YLYR T R + Sbjct: 121 AIGRTYLYRFAVARKPLFDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAARMF 180 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIR 187 + + L H T R I P RT+ + + +I Sbjct: 181 IGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWDIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYF 241 + A+SFL+ Q+R VGSL +G + + + L + AP GLY Sbjct: 241 IKAKSFLYKQVRRIVGSLLSLGSDRIDEKCIYQMLTIPSKHSWDSRVVPAPACGLYL 297 >gi|198462560|ref|XP_001352470.2| GA20054 [Drosophila pseudoobscura pseudoobscura] gi|198150878|gb|EAL29967.2| GA20054 [Drosophila pseudoobscura pseudoobscura] Length = 504 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 102/297 (34%), Gaps = 56/297 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTINKLEPQSLDTNSVQGCLELALRVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVHVDLARRDGQPYDTTTLTGVLNRTLDKQRLPIRVLSSQVVPDTFHCRYH 120 Query: 107 AIRRSYLYRI-----------------------------------ITRQAPLALEKGRAW 131 AI R+YLYR T R + Sbjct: 121 AIGRTYLYRFAVARRPLFDDGKLRNKGFEAFVPVEEIDRCYFLLAPTFDIERIRNAARMF 180 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIR 187 + + L H T R I P RT+ + + +I Sbjct: 181 IGVHDFRTFMSVSRQKSLSRDHPMFTLRKIDEINIRPGRTLALPSNATLAAETYDYWDIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYF 241 + A+SFL+ Q+R VGSL +G + + + L + AP GLY Sbjct: 241 IKAKSFLYKQVRRIVGSLLSLGSDRIDEKCIYQMLTIPSKHSWDSRVVPAPACGLYL 297 >gi|308813608|ref|XP_003084110.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116055993|emb|CAL58526.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 450 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 16/251 (6%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 + Y G+GY G QR +I+G +E AI G V A RTD GV Sbjct: 45 ALTFAYVGAGYAGMQRNPGVRTIEGELEGAIARAGGISDANAGDFAKVQWTRAARTDKGV 104 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV P + +N L + ++ ++ A + Sbjct: 105 SAVGQVIAL--KMVMEPDGMLARINEALPERFEVFGIDRVTGGYEYVIPTWAFDPNLFVE 162 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 ++ E+ R + + + + Sbjct: 163 GAEKEKFTFTEETRRRVERVLGNYC----GTHNFHNYTVKVKPTDAQAKRYILSFECSQP 218 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + VV +SF+ QIR +G++ V G D + A+ + P+AP Sbjct: 219 FEVDGEEFVRCEVVGQSFMLHQIRKLIGTMLAVMRGTLDEDDQKFAILSHQFVPT-PMAP 277 Query: 236 PEGLYFDSVEY 246 GL+ Y Sbjct: 278 ELGLFLCECIY 288 >gi|224083654|ref|XP_002193509.1| PREDICTED: similar to Pseudouridylate synthase 3 [Taeniopygia guttata] Length = 462 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 96/265 (36%), Gaps = 27/265 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N +I+ + +A+ + H GRTD GV A Sbjct: 68 VALRIAYLGWGYQGFASQENTPNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDL---------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 QV DL + + LN L I +L + V +F A Sbjct: 128 GQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVL--PPDIRVLAWAPVGPEFSA 185 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFS + R+Y Y Q +AL A + D N+ R+I Sbjct: 186 RFSCLSRTYRYFFPCAQLDVALMDTAAQRYVGTHDFRNLCKMDV---ANGVLNFQRTILR 242 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + L + V ++FL+ Q+R + L L+G G + +++ L Sbjct: 243 ARVTRVSGGGEARPRDPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMESPDVIDELLN 302 Query: 224 AQD--RKECGPLAPPEGLYFDSVEY 246 + RK +A L E+ Sbjct: 303 VEKNPRKPQYSMAVEFPLVLYDCEF 327 >gi|254282596|ref|ZP_04957564.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] gi|219678799|gb|EED35148.1| tRNA pseudouridine synthase A [gamma proteobacterium NOR51-B] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 2/200 (1%) Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 AGRTD+GVH Q+ HFD N+ L T+ + V+ FHARFS Sbjct: 5 CAGRTDTGVHGFAQIVHFDDPVGRSEKAWVMGTNSAL--PSTVRVHWAHPVEDDFHARFS 62 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 A R+Y Y I + A G + ++LD + M AAQ LVG HDF+ FR+ C A+ Sbjct: 63 AELRTYRYVIANTRVHPAQLAGLVTWVRRALDADVMNKAAQALVGEHDFSAFRAASCGAN 122 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +P+R ++ + G+L+ I + A +FLH +R+ GSL +VG G T+ + +D Sbjct: 123 TPMRRVEQISITRRGDLVVIEIAANAFLHHMVRNIAGSLIMVGSGLRTADWFRDIFRGRD 182 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R A GLY V Y Sbjct: 183 RTVAADTAAAAGLYLIHVSY 202 >gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum] Length = 588 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 28/263 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVV------VHGAGRTD 52 ++ +++ Y+G+ Y+G QR N +I+ KA++ ++ E A RTD Sbjct: 255 RKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTD 314 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A RQV L + + + L + I + + V K F+++ RSY Sbjct: 315 KGVSAARQVVSLKLREDIDISKINEQL------PEVIRVFGIRRVTKGFNSKVQCDSRSY 368 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR-------HDFTTFRSIHCQA 165 Y + T LD + L + + ++ A Sbjct: 369 TYLLPTVSFTPH--DQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 426 Query: 166 SSPIRT--IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++T + V I++ +SF+ QIR VG L V G + L+ L Sbjct: 427 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD--LA 484 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 K P AP GL D V Y Sbjct: 485 FGMDKVNIPKAPGLGLLLDYVHY 507 >gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545] Length = 281 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 82/259 (31%), Gaps = 21/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKN------GSSIQGSIEKAIFL-------VTGEIVVVHGAGR 50 + + Y G Y G+ Q N +I+G++ A+ T V GR Sbjct: 18 IALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTDVDYTRCGR 77 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD+GV A+ Q+ + L+ R + Sbjct: 78 TDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRALPD-DIRVTGWCY 136 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI- 169 K L LD E MR AA+ L G HDF F + + Sbjct: 137 VDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMRDAARRLEGEHDFRNFCKMDVKNVHNHA 196 Query: 170 ----RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + L I V +FL Q+R L LVG GK + ++ L + Sbjct: 197 RRILESASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGLGKEPPSVIDDLLDLE 256 Query: 226 D--RKECGPLAPPEGLYFD 242 RK +AP E L Sbjct: 257 KTTRKPQYEMAPEEPLLLW 275 >gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris RN66] Length = 332 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 90/270 (33%), Gaps = 28/270 (10%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHA 57 R+ I Y G+ Y+G Q +I+ A + E + GRTD GVH+ Sbjct: 26 RFLFRISYIGTNYYGMAYQNETIPTIEREFYNACLRLKLIKNREDCDLIRCGRTDKGVHS 85 Query: 58 LRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 +L R+ P + +N L I IL V+ F ARF R Y Y Sbjct: 86 TGNYISINLRTRDTSPYNYQEMINGVL--PWDIRILGFCQVNNNFSARFDCDSRVYKYIF 143 Query: 117 ITRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q L +D N F + + +RTI F Sbjct: 144 PIDQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDIKNRPNQTYVRTIYDF 203 Query: 176 DVNSFGN----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 V F N L I ++ +FL Q+R VG L + GK S + Sbjct: 204 RVEVFNNNKISSSSFDNSINDTKLGVITIIGSAFLWHQVRLMVGILFEISLGKIRSECIT 263 Query: 220 KALQA---QDRKECGPLAPPEGLYFDSVEY 246 K L +D P+A GL + Sbjct: 264 KLLDNYFDKDEIPFFPMASEIGLILWDCNF 293 >gi|330902540|gb|EGH33555.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 231 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Query: 3 RYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R + +EY GS Y GWQRQ ++Q ++E A+ V V + AGRTD+GVHA QV Sbjct: 8 RIALGVEYKGSRYCGWQRQASGVLTVQETLEDALSKVAASPVSLMCAGRTDAGVHACGQV 67 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD 98 HFD E N L +++ + Sbjct: 68 VHFDTQAERTLKAWVMGANINLPHDVSVTWARVMPAS 104 >gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like [Saccoglossus kowalevskii] Length = 320 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 94/255 (36%), Gaps = 19/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y+G GY G QR K +I+G + KAI + + RTD Sbjct: 56 RKVVLLLSYSGKGYMGMQRNKGVETIEGDLIKAIVTAGAVPQSHADIPQKMQFQRCARTD 115 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+RQV + + + +N L +I ++ F+A+ + R+Y Sbjct: 116 KGVSAVRQVVSLKM---MLVDNAVEQINNSL--PPSIRVITYKRTTGGFNAKNTCSHRTY 170 Query: 113 LYRIITRQAPLALEKGRAWL---IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y + T + K+ D N + F Sbjct: 171 SYLMPTFALSSNCNENYRVTDEVHQKAQDLLNCYKGTHNFHNFTSGKAFTEQSAMRFMRE 230 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + V + I ++ +SF+ QIR +G + + G + L+K +A K Sbjct: 231 LNVSQAFVRCGLEFVVITIIGQSFMIHQIRKMIGLVIAIIRGVAPKSTLDKCWEAG--KM 288 Query: 230 CGPLAPPEGLYFDSV 244 P AP GL ++V Sbjct: 289 DIPKAPSLGLMLENV 303 >gi|322374718|ref|ZP_08049232.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] gi|321280218|gb|EFX57257.1| tRNA pseudouridine synthase A [Streptococcus sp. C300] Length = 191 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 4/191 (2%) Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + QV HFDL + L AL+ + + I ++++ IV FH R++ ++Y + + Sbjct: 1 MEQVIHFDLPYQMDEEKLRFALDT--QSPEDIDVISIEIVADDFHCRYAKHSKTYEFIVD 58 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 + + + A P LD E M+ A + L G HDFT F + +RTI Sbjct: 59 RGRPKNPMRRHYATHFPYPLDVERMQEAVKKLEGTHDFTGFTASGTSVEDKVRTITEASL 118 Query: 177 -VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 V+ G + FL+ QIR+ VG+L +G+ + ++ L+ +DR+ GP A Sbjct: 119 SVDETGQFLTFTFSGNGFLYKQIRNMVGTLLKIGNNRMPVEQIDLILEKKDRQLAGPTAA 178 Query: 236 PEGLYFDSVEY 246 P GLY + Y Sbjct: 179 PNGLYLKEIRY 189 >gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens] Length = 385 Score = 99 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 17/257 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ + G+GYFG QR + +I+ + A+F + + A RTD Sbjct: 46 RKVALLLGFCGAGYFGMQRNRGTKTIEEDLINALFKAGAIPEAAKEHEQKMAFQRASRTD 105 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA QV F + +V + +N++L + A Y Sbjct: 106 KGVHAAAQVVSFKM---FVVDDVIAKINSHLPREIRVFGHFRVTKGFNSKTACDARTYKY 162 Query: 113 ---LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 Y ++ I D M + ++ + + Sbjct: 163 VMPTYAFANKEKKNMYILVIEATIKHVRDILAMYVGTRNFHNFTSKKAYEDDSAKRYIMQ 222 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 V + + + V +SF+ QIR +G + + G T +EKA + +DR Sbjct: 223 FDCGLPFVRNNLEFVTLTVKGQSFMLHQIRKMIGLMIGIVRGDATIEAMEKAWE-KDR-V 280 Query: 230 CGPLAPPEGLYFDSVEY 246 P AP GL + Y Sbjct: 281 DIPRAPGLGLMLYQLHY 297 >gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis] gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis] Length = 507 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 17/253 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N +++ ++ A+ + + H GRTD GV AL Sbjct: 61 VALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTRLVESRQTSNYHRCGRTDRGVSAL 120 Query: 59 RQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV DL + LN L I +L+ + V F ARFS R+Y Y Sbjct: 121 AQVISLDLRCSAEGKPEIRYVHILNRVL--PPDIRVLSWAPVPPSFSARFSCGSRTYRYL 178 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q + A L+ + D N+ + F A Sbjct: 179 FPCAQLDVEAMDKAARLLEGTHDFRNLCKMDVA----NGVLNFTRTVLSARVGPVPEIPG 234 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPL 233 D+ F L +++ +FL+ Q+R +G L LVG GK + + L RK + Sbjct: 235 DMGPFQ-LYHLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVVKNPRKPQYNM 293 Query: 234 APPEGLYFDSVEY 246 A L + + Sbjct: 294 AVEFPLVLYNCHF 306 >gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138] gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata] Length = 438 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +I+G+I +A+ +T + GRTD G Sbjct: 88 IALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFSRCGRTDKG 147 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV + N + +I + L D + A Sbjct: 148 VSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAV-----CLRPP 202 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + LD + M+ AA+ G HDF F + Q ++ RT+ Sbjct: 203 NSFDARFSCEYRHYKYLFHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDGSKQITNYNRTM 262 Query: 173 DH-FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKE 229 + + + ++ +FL Q+R L LVG G T +EK L + +K Sbjct: 263 ISANIKHVYNDFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEKMLDVTSMPQKP 322 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 323 MYEMASDIPLLLYDCKF 339 >gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi] gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi] Length = 430 Score = 99 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 92/250 (36%), Gaps = 13/250 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G +Q + +I+ + +A+ + + GRTD GV AL Sbjct: 70 IALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNCEFTKCGRTDKGVSAL 129 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV F+ + +N+ L D I +L V K F ARF ++R+Y Y I Sbjct: 130 GQVVSFNCRYNPKKNDYVRLINSLL--PDDIRVLAWCPVSKDFDARFGCLQRTYKYYFIR 187 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + K A D N + + R + + + Sbjct: 188 QNLNIEKMKQAAAHFVGEHDFRNFCKINEEVTNFRR----RILSMEIIKSDLLHQQHGND 243 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE--CGPLAPP 236 + + EI V SFL Q+R L L+G+GK + + + L + K +A Sbjct: 244 EYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIPELLDIEKYKARPVYHIASE 303 Query: 237 EGLYFDSVEY 246 L + Sbjct: 304 FPLVLYDCVF 313 >gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum] Length = 390 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 28/263 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVV------VHGAGRTD 52 ++ +++ Y+G+ Y+G QR N +I+ KA++ ++ E A RTD Sbjct: 57 RKFAVLLGYSGTNYYGMQRNPNTPTIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTD 116 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A RQV L + + + L + I + + V K F+++ RSY Sbjct: 117 KGVSAARQVVSLKLREDIDISKINEQL------PEVIRVFGIRRVTKGFNSKVQCDSRSY 170 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR-------HDFTTFRSIHCQA 165 Y + T LD + L + + ++ A Sbjct: 171 TYLLPTVSFTPH--DQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSA 228 Query: 166 SSPIRT--IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++T + V I++ +SF+ QIR VG L V G + L+ L Sbjct: 229 KRYMKTLICEKPFVKDDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD--LA 286 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 K P AP GL D V Y Sbjct: 287 FGMDKVNIPKAPGLGLLLDYVHY 309 >gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Acyrthosiphon pisum] Length = 441 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 23/257 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---LVTGE------IVVVHGAGRTDSGV 55 +++ Y+G GY G QR K +++ + A+ L+T E + A RTD GV Sbjct: 69 AILLAYSGLGYLGLQRNKGVKTVEEELLLALKSKNLITDEGFEQIQTMQFQRAARTDKGV 128 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 ALRQ+ L + ++ AL + I +L++ V K F+++ S R+Y Y Sbjct: 129 SALRQIISLLLPEDVDKQVINTAL------PEQIRVLDIRRVTKGFNSKNSCDGRTYSYT 182 Query: 116 IITR---QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 T A ++ + + H++T+ + ++ Sbjct: 183 CPTFAFAPAETTIDFSYRIDATVIDRINEVVKSFLGCHNYHNYTSKKKPGDPSAQRYMVS 242 Query: 173 DHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + D + LI + V +SF+ QIR VG + + G +E+A Q DR Sbjct: 243 FYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAWQ-PDR-L 300 Query: 230 CGPLAPPEGLYFDSVEY 246 P+AP GL + V Y Sbjct: 301 DLPIAPGLGLVLEEVHY 317 >gi|115376217|ref|ZP_01463459.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] gi|115366790|gb|EAU65783.1| tRNA pseudouridine synthase A [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 99.6 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 97/247 (39%), Gaps = 10/247 (4%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + + Y G G+ G+QRQ G ++Q ++E + TG V AGRTD GVHA QV Sbjct: 31 LWLWYRGGGFHGFQRQPEGPTVQSTLEAVLRS-TGVPATVMPAGRTDRGVHARMQVVSLR 89 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 L P L L A + + + + FHA++SA ++Y YR+ Sbjct: 90 LEAGDTPEALAARLPA--LLPPDLGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSET 147 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVG-----RHDFTTFRSIHCQASSPIRTIDHFDVNS- 179 + + IA + L + + RT++ V+ Sbjct: 148 WRPYVLEAAEEPRLAQRAIAPERLAELLQGAVGQRDFWAFHASSSPRKPRTLESATVHEL 207 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L EI++ SF Q+R VGS L G+ AL++ + G A GL Sbjct: 208 EGGLFEIQLRGDSFARYQVRYLVGSALLTAAGQLPEAQWRAALESAE-AIPGLRAAAAGL 266 Query: 240 YFDSVEY 246 V Y Sbjct: 267 ILWEVRY 273 >gi|46931324|gb|AAT06466.1| At1g09800 [Arabidopsis thaliana] Length = 372 Score = 99.6 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 114 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 115 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 174 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 175 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 234 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 +R++D ++ + + L Sbjct: 235 MRSLDELNITEVPSTPYFPSITERTLSNL 263 >gi|42561874|ref|NP_172451.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332190374|gb|AEE28495.1| tRNA pseudouridine synthase A [Arabidopsis thaliana] Length = 372 Score = 99.6 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 114 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 115 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 174 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 175 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 234 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 +R++D ++ + + L Sbjct: 235 MRSLDELNITEVPSTPYFPSITERTLSNL 263 >gi|51971559|dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] gi|51971573|dbj|BAD44451.1| unnamed protein product [Arabidopsis thaliana] Length = 368 Score = 99.6 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 13/209 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 51 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNV 110 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 111 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 170 Query: 110 RSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR+++ P LEK R W +P+ L+ M+ A + LVG HDF++FR+ CQA SP Sbjct: 171 RTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQAKSP 230 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 +R++D ++ + + L Sbjct: 231 MRSLDELNITEVPSTPYFPSITERTLSNL 259 >gi|125556371|gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group] gi|125598125|gb|EAZ37905.1| hypothetical protein OsJ_22255 [Oryza sativa Japonica Group] Length = 417 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 94/283 (33%), Gaps = 40/283 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGAGR 50 + +++ Y+G + GWQ+Q +++QG +EK + E AGR Sbjct: 123 FKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGR 182 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKIS--DTISILNLSIVDKQFHARFSA 107 TD GV AL+QV F R+ V K A+N F A++ Sbjct: 183 TDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRR 242 Query: 108 IRRSYLYRII------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 + Q+ +E + P+S D + + L G+ + Sbjct: 243 YLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFAR 302 Query: 162 HCQASSPIRTIDHFDVNS------------------FGNLIEIRVVARSFLHTQIRSFVG 203 QAS + + I I +VA FL +R V Sbjct: 303 DTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVA 362 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L ++A R+ P APP+GL V Y Sbjct: 363 TAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGY 405 >gi|301117110|ref|XP_002906283.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] gi|262107632|gb|EEY65684.1| tRNA pseudouridine synthase A, putative [Phytophthora infestans T30-4] Length = 316 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 50/287 (17%) Query: 3 RYCMIIEYNGSGYFGWQRQK-------NGSSIQGSIEKAIFLVTG--EIVVVHGAGRTDS 53 RYC+ I Y G+G+ GWQRQ+ S+Q +E A+ G + V V G RTD+ Sbjct: 18 RYCLHIAYYGTGFVGWQRQQQETKSSSGHDSVQEVVEAAVTETLGTSKRVNVTGVSRTDA 77 Query: 54 GVHALRQ--VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 G HAL Q D L +N L I + V +R + + Sbjct: 78 GTHALYQFGFIRLDSELPMTMDELKDRVNTKLDIGRVAVLGVT--VPTTGPSRIRSRYKK 135 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y+Y + P +W + + LD + +R A + L G HDF F + T Sbjct: 136 YIYYLQQGHRPDLELGKYSWFLGRRLDIQRIRDALKFLEGTHDFRPFSQGLQKPKFEDMT 195 Query: 172 -----------------------------------IDHFDVNSFGNLIEIRVVARSFLHT 196 + N+ + + I +VA FL Sbjct: 196 TLRTVMSAKVVARRNVNFSLDPPVSGSGEIIDAADMYREPGNTPVHFVCIELVANGFLRH 255 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 +R +G+L+ +G+G ++ +++ L + + GP AP +GL+ Sbjct: 256 MVRRIIGTLRPIGEGTQPASRMQQVLAGE--VQPGPSAPTKGLWLHR 300 >gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus] Length = 431 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 94/259 (36%), Gaps = 26/259 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + A+ ++ E + A RTD GV Sbjct: 98 ILMGYSGVNYFGMQRNPGTKTIEEELLVAMLKNEWISDEAFKQPQQIQFQRAARTDKGVS 157 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L L K L + I + + V K F+++ + R+Y Y + Sbjct: 158 AATQVVSIKLPENLDIAGLNKDL------PEQIRVFAVKRVTKGFNSKSNCDARTYTYTL 211 Query: 117 ITRQAPLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 T E+ D + ++ + G +F F S ++ Sbjct: 212 PTVAFAAHDEEVSVETYRAPEDRIQKVQETLKLFEGTKNFHNFTSRKEFIDPSVKRFIMS 271 Query: 176 DVNSFGNLIE--------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + E I++ +SF+ QIR VG V G + KA + + Sbjct: 272 FECEAPFVPEGTTVEFATIKIKGQSFMLHQIRKMVGLTLAVVRGLTPPETIMKAFE--ET 329 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P AP GL + Y Sbjct: 330 RYGVPTAPGLGLVLSRIHY 348 >gi|296108989|ref|YP_003615938.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] gi|295433803|gb|ADG12974.1| tRNA pseudouridine synthase A [Methanocaldococcus infernus ME] Length = 258 Score = 99.2 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 90/250 (36%), Gaps = 33/250 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y + I Y+G Y +Q+Q + ++ + + + E +++ GRTD GV AL Sbjct: 2 YILKIAYDG-RYS-FQQQPHKETVCDKLLNTLEKLNFLEERKIIYSGGRTDKGVSALGNF 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 L +E + + L + + + H R+ Y ++ Sbjct: 60 VILKLKKEPILSYINHELKKFGIWILGYKEIEEIPKVQYRHYRYIMPNLDYNLELM---- 115 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + + + + + SPIR I +N +G Sbjct: 116 --------------------RKAGEKLIGEHSFHNLSKRDRSKEKSPIRKIYDIKINDYG 155 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ VV SFL +R VG L L+G + + ++K L + +E P EGL Sbjct: 156 FFLEVDVVGESFLWQMVRKIVGLLHLIGREEKSLEWVDKILD-PNYREGVITFPAEGLIL 214 Query: 242 ----DSVEYS 247 + Y+ Sbjct: 215 VEAKVDINYN 224 >gi|297805092|ref|XP_002870430.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316266|gb|EFH46689.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 420 Score = 99.2 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 97/318 (30%), Gaps = 72/318 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI--------FLVTGEIV-----VVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ + + V A Sbjct: 93 VNFKIVLSYNGTSFDGWQKQPDLHTVQGVVEKSLGGFVDDRKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVI------------------LCKALNAYLKISDTIS 90 GRTD GV AL QV F R+ + I + K ++ Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKW 212 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE------------------------ 126 L I ++ I Sbjct: 213 RRYLYIFPLDDAESLHESGENHENFIFDENHEKQRNGLLSEENTEEVILSEDDELEIEET 272 Query: 127 -------KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----- 174 + + +D ++ + L + ++ + + H Sbjct: 273 SNGLEVVEKPSDFSVIKVDQLLQQLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAE 332 Query: 175 -----FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 D ++ + +VA FL +R V + + L K L+A R+ Sbjct: 333 IRLSCSDCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAENDALLKLLEASCRRA 392 Query: 230 CGPLAPPEGLYFDSVEYS 247 P AP EGL V Y+ Sbjct: 393 TAPPAPSEGLCLFDVGYA 410 >gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta] gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta] Length = 410 Score = 99.2 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L + A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEDLDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI-------HCQASSP 168 + T EK + E ++ + L F + + Sbjct: 187 LPTMAFAPFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 246 Query: 169 IRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 I + D IE +V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFTSSDPFRSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|118474657|ref|YP_891922.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] gi|166228690|sp|A0RNY9|TRUA_CAMFF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|118413883|gb|ABK82303.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. fetus 82-40] Length = 258 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 100/262 (38%), Gaps = 20/262 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ Q Sbjct: 1 MMKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V+ + W I I N+ V +FH R+ A+ RSY Y I + Sbjct: 60 VSCVECGEFWNERFERLKNQINKHTKPYIYIKNIQKVSDEFHPRYDAVARSYRYIIYHDE 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + L K+L+ + + IA + +G+HDFT F + S +R I + Sbjct: 120 QNVFLAD--YVHFYKTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREIFYAKAYQI 177 Query: 181 GN----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 L I A FL Q+R V + + Sbjct: 178 YKTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVANALQACKSDENLYKFISNFKE 237 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 Q +PP GLY V Y Sbjct: 238 QK-PLTRMPSPPNGLYLKRVFY 258 >gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 78/253 (30%), Gaps = 17/253 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N +++ ++ A+ + + H GRTD GV AL Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123 Query: 59 RQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV DL + LN L + + YL+ Sbjct: 124 GQVISLDLRCSGEGKPEIRYVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFS 183 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + R A ++ + P Sbjct: 184 CAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVMNFIRTVLSARVEPVPEIPG------ 237 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPL 233 L +++ +FL+ Q+R +G L LVG GK + + L RK + Sbjct: 238 -DMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNM 296 Query: 234 APPEGLYFDSVEY 246 A L + + Sbjct: 297 AVEFPLVLYNCHF 309 >gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae] gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae] Length = 410 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 102/261 (39%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E V + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L D I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPDELDLE----AFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + T + EK + E + + L F + + + + F Sbjct: 187 LPTVAFASSEEKIEDLHDTYRITPELLEKVRETLKLYEGTKNFHNFTSKKNFLDPSAKRF 246 Query: 176 DV----------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTESLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster] gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster] Length = 410 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTI 172 + T EK + E ++ + L +F F S + Sbjct: 187 LPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 246 Query: 173 DH-------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia] gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia] Length = 411 Score = 98.8 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTI 172 + T E+ + E ++ + L +F F S + Sbjct: 187 LPTVAFASFEEQVEDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 246 Query: 173 DH-------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster] gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster] Length = 442 Score = 98.8 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 105 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 164 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 165 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 218 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTI 172 + T EK + E ++ + L +F F S + Sbjct: 219 LPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 278 Query: 173 DH-------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 279 IMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 336 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 337 EERLDLPMAPGLGLVLDTVHY 357 >gi|224079884|ref|XP_002194368.1| PREDICTED: similar to MGC80334 protein [Taeniopygia guttata] Length = 427 Score = 98.4 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 119/248 (47%), Gaps = 28/248 (11%) Query: 27 IQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVIL-----CKALN 80 +Q +EKA + + H + RTD+GVHAL AH D+ R + LN Sbjct: 153 VQNYLEKAAERLKPSAPIKFHISSRTDAGVHALANAAHLDIQRPPGKAPFSGQQLVQGLN 212 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL--- 137 +L+ + I IL+ V FHARF A+ R+Y+YR++ A + + + Sbjct: 213 HHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRLLLGCAHHSQIPVFEQDLCWAPAGG 271 Query: 138 --DCENMRIAAQHLVGRHDFTTFR--SIHCQASSPIRTIDH------------FDVNSFG 181 D MR AAQ L+G HDF++FR A SP+RT+ ++S Sbjct: 272 PLDVAAMREAAQFLLGTHDFSSFRSLHAEAAAQSPVRTLQQLQLQPAPGFLQQHYLHSGL 331 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEGL 239 E++V +RSFL+ Q+R VG+L VG G+ L + L+ +D P +AP GL Sbjct: 332 EFWEVKVKSRSFLYRQVRRMVGALVAVGQGRLAPVQLRELLELRDPHAFPPHAMAPAAGL 391 Query: 240 YFDSVEYS 247 + VEYS Sbjct: 392 FLQRVEYS 399 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQV 61 RY + +Y G+ Y I + +A + + H + RTD+GVHAL Sbjct: 7 RYLVFFQYLGTRYR----------IIAELTRAAERLKPSAPIKFHISSRTDAGVHALANA 56 Query: 62 AHFDLVREWVPVIL-----CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH D+ R + LN +L+ + I IL+ V FHARF A+ R+Y+YR+ Sbjct: 57 AHLDIQRPPGKAPFSSQQLVQGLNHHLR-PEPIRILSAQRVSSTFHARFCALSRTYIYRL 115 Query: 117 ITRQAPLALEKGRAWLIPK 135 + A + + Sbjct: 116 LLGCAHHSQIPVFEQDLCW 134 >gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans] gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans] Length = 411 Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTI 172 + T EK + E ++ + L +F F S + Sbjct: 187 LPTVAFASFEEKVDDVHDTFRISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 246 Query: 173 DH-------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F + ++V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|52075919|dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group] Length = 495 Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 94/283 (33%), Gaps = 40/283 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGAGR 50 + +++ Y+G + GWQ+Q +++QG +EK + E AGR Sbjct: 123 FKIVLSYHGGSFDGWQKQPGLNTVQGLVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGR 182 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKIS--DTISILNLSIVDKQFHARFSA 107 TD GV AL+QV F R+ V K A+N F A++ Sbjct: 183 TDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRR 242 Query: 108 IRRSYLYRII------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 + Q+ +E + P+S D + + L G+ + Sbjct: 243 YLYIFPLDEDVKLISGEEQSAKTVEGPECNIKPQSFDVGKVDKIIRQLEGKSLSYKMFAR 302 Query: 162 HCQASSPIRTIDHFDVNS------------------FGNLIEIRVVARSFLHTQIRSFVG 203 QAS + + I I +VA FL +R V Sbjct: 303 DTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLRKMVRVLVA 362 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L ++A R+ P APP+GL V Y Sbjct: 363 TAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGY 405 >gi|213622844|ref|ZP_03375627.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 188 Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 2/172 (1%) Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +NA L I++ + V FHARFSA R Y Y I + A+ Sbjct: 1 WTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYY 58 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V G + + + A +F+ Sbjct: 59 EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFV 118 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 H +R+ VGSL VG + + + L A+DR A EGLY +V+Y Sbjct: 119 HHMVRNIVGSLLEVGAHNQPESWIAELLAARDRTLAAATAKAEGLYLVAVDY 170 >gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST] gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST] Length = 451 Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 96/259 (37%), Gaps = 26/259 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + +A+ + E + A RTD GV Sbjct: 115 ILLGYSGVNYFGMQRNPGTKTIEEDLLRAMQKREWINDEGFRQPQQIQFQRAARTDKGVS 174 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L ALN+ L + I + + V K F+++ + R+Y Y + Sbjct: 175 AAMQVVSIKLPDNLDIE----ALNSEL--PEDIRVYAVKRVTKGFNSKTNCDARTYTYTL 228 Query: 117 ITRQAPLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 T EK + + VG +F F S ++ Sbjct: 229 PTIAFAPNEEKVDIQTYRLPAERLARVNEVLALYVGTKNFHNFTSRKEFLDPSVKRFIMS 288 Query: 176 DVNSFGNLIE--------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L E I++ +SF+ QIR VG V G S +EKA QDR Sbjct: 289 FECDPPFLPEGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVRGLAESDIIEKAF-GQDR 347 Query: 228 KECGPLAPPEGLYFDSVEY 246 P AP GL + Y Sbjct: 348 -YGIPTAPGLGLVLSRIHY 365 >gi|271962666|ref|YP_003336862.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] gi|270505841|gb|ACZ84119.1| tRNA-pseudouridine synthase I [Streptosporangium roseum DSM 43021] Length = 360 Score = 98.4 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHAL 58 M+R + + Y+G+ + GW +Q ++QG IE+A+ + E V+ AGRTD+GVHA Sbjct: 1 MVRLRLDLAYDGTDFSGWAKQPGRRTVQGEIEEALGKILRLPEPPVLTVAGRTDAGVHAR 60 Query: 59 RQVAHFDL 66 QVAH DL Sbjct: 61 GQVAHVDL 68 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 2/162 (1%) Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL-DCENMRI 144 + + +++ + F ARFSA+ R Y YR+ + + R + D + + Sbjct: 179 PPDVRVYRVTVAPRGFDARFSAMSRRYAYRVSDAPGGVDPLRRREVIWYGRPLDVDRLNA 238 Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AA L+G HDF F A++ R + D +++ VVA +F H+ +R+ VGS Sbjct: 239 AAAVLLGEHDFAAFCKKREGATTI-RELQRLDWVRQDDILVATVVADAFCHSMVRALVGS 297 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L VG+G+ + L R +AP GL + V Y Sbjct: 298 LLPVGEGRLAVDWPGRVLTRAVRDSGVHVAPAHGLCLEEVRY 339 >gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 542 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 92/269 (34%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + Y+G+ Y G Q+ S+I+ +EKA F + + RTD Sbjct: 116 KKIAFCVGYSGTNYCGMQKNWGYSTIEEELEKACFKTGSISPNNFYSQRKIDWIRCARTD 175 Query: 53 SGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GV A+R + L + + K A+N++L + I + + V+ FHA+ RS Sbjct: 176 KGVSAVRNMVSCKLEYDPPTLEELKNAINSHL--PEDIKVFGIKRVNNSFHAKNCVDGRS 233 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA--------AQHLVGRHDFTTFRSIHC 163 YLY T K + E R+ Sbjct: 234 YLYITPTFAFEPVHATSGRPETYKFDETERSRVNSMLAMFLGTHKFHNYTSRKDSGDPSA 293 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD---------GKWT 214 + + + V + I ++ SF+ QIR +G + V + Sbjct: 294 KRTMSLFQCSEPFVMEGIEFVSINIIGGSFMLHQIRKMIGFVMSVMRRGFFWEKNNDTES 353 Query: 215 STDLEKALQA--QDRKECGPLAPPEGLYF 241 + K + A R+ P+AP GL Sbjct: 354 LDYVRKIITATLCHRQFNLPMAPGTGLML 382 >gi|332261432|ref|XP_003279774.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase-like 1-like [Nomascus leucogenys] Length = 287 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 109/245 (44%), Gaps = 26/245 (10%) Query: 27 IQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLV-----REWVPVILCKALN 80 +Q +E+A + E V + RTD+GVHAL AH D+ + P +L +ALN Sbjct: 25 VQNYLEEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLTEALN 84 Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK----- 135 +L+ +L V FHAR +A R+YLYR+ T + Sbjct: 85 THLRHPAI-RVLRAFRVPNDFHARHAATSRTYLYRLATGCNRRDELPVFERNLCWALPAD 143 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG------------NL 183 LD M+ AAQHL+G HDF+ F+S SP+RT+ V+ Sbjct: 144 CLDVVAMQEAAQHLLGTHDFSAFQSTGSPVPSPVRTLRRVSVSPGQASPLVTQESRKLRF 203 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYF 241 + ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ Sbjct: 204 WSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFL 263 Query: 242 DSVEY 246 SV Y Sbjct: 264 KSVLY 268 >gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis] Length = 505 Score = 98.0 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 17/253 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G GY G+ Q+N +++ ++ A+ + + H GRTD GV AL Sbjct: 64 VALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTRLVESRQTSNYHRCGRTDRGVSAL 123 Query: 59 RQVAHFDLVREWVPVILCKA---LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 QV DL + LN L I +L+ + V F ARFS R+Y Y Sbjct: 124 GQVISLDLRCSGEGKPEIRYVHILNRVL--PPDIRVLSWAAVPPSFSARFSCRSRTYRYL 181 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 Q + A L+ + D N+ R++ P+ + Sbjct: 182 FPCAQLDVEAMDKAARLLEGTHDFRNLCKMDV---ANGVMNFIRTVLSARVEPV--PEIP 236 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPL 233 L +++ +FL+ Q+R +G L LVG GK + + L RK + Sbjct: 237 GDMGPFQLYRLQITGLAFLYHQVRCIMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNM 296 Query: 234 APPEGLYFDSVEY 246 A L + + Sbjct: 297 AVEFPLVLYNCHF 309 >gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 390 Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 84/266 (31%), Gaps = 34/266 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV---------VVHGAGRTDS 53 +Y M + Y G Y G Q N +++ I +A+ + V A RTD Sbjct: 53 KYAMFLAYRGKNYHGMQVNPNVPTVEKYIMEALQKLNLITVDQVVQPSLFKFQRAARTDK 112 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A +Q+ L + L K F ++ RSY Sbjct: 113 GVSATKQICSLLLPTIEGKE-----------NDTVNLLNGLQRATKSFDSKKWCDYRSYS 161 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + + + R + D E + VG H+F F S + Sbjct: 162 YTLPSYCFRHQSDLERDKFRLDNKDIEEINRILMQYVGTHNFYNFTSGKLHKDESCKRFI 221 Query: 174 HFDVNSFGNLI------EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 L + + +SFL QIR +G + G +K Q + Sbjct: 222 IRCECGKRFLYNNIEYLTVDIKGQSFLIHQIRKMIGFCISLIRGDLDPCLQQKVWQNE-- 279 Query: 228 KECGPLAPPEGLYFDSV------EYS 247 + P AP GL + V Y+ Sbjct: 280 RIKVPKAPSLGLVLEEVRMPHYEHYN 305 >gi|167590068|ref|ZP_02382456.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 77 Score = 97.6 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 43/77 (55%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + I+Y+G+ + GWQ Q +G ++Q ++E+A+ + AGRTD+GVH L QV Sbjct: 1 MRIALGIQYDGAAFCGWQSQPHGKTVQDALERALAEFAQTPLHTTVAGRTDTGVHGLGQV 60 Query: 62 AHFDLVREWVPVILCKA 78 HFD + + Sbjct: 61 VHFDTELDRADFSWVRG 77 >gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri] Length = 813 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 90/261 (34%), Gaps = 32/261 (12%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 + + Y G Y G+ Q +++ ++ +A+ + GRTD Sbjct: 456 IALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRLVAAAADVFKTASYARCGRTD 515 Query: 53 SGVHALRQVAHFDLVREWVPVILCKA-----LNAYLKISDTISILNLSIVDKQFHARFSA 107 GV L Q+ + + LN L + L + VD++ +ARF Sbjct: 516 RGVSGLGQIVTLQVRSNGASDPREELDYVGLLNRAL--PSDVRALGWAPVDEELNARFDC 573 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y Y A G A + + +F + + ++ + Sbjct: 574 KWRQYKYFFEKTTALDLEAMGE------------AARAFEGVHDFRNFCRMDAENVKSFT 621 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQ 225 + G L+ I V +FL Q+R+ L +VG G + +E+ L+ Sbjct: 622 RRVLECTIEEAGDGKLMYINVRGTAFLWHQVRNMASVLFMVGLGHEPPSVVERLLDLERT 681 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 RK P+AP E L Y Sbjct: 682 PRKPQYPMAPEESLLLWRSGY 702 >gi|255609446|ref|XP_002539049.1| pseudouridylate synthase, putative [Ricinus communis] gi|223509026|gb|EEF23334.1| pseudouridylate synthase, putative [Ricinus communis] Length = 132 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + IEY+G+ + GWQ Q N + +Q +IE AI V GE V +H AGRTDSGVHAL QV Sbjct: 16 MKIAIGIEYHGAYFQGWQSQPNAAGVQDAIEHAIKQVGGETVRLHAAGRTDSGVHALMQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 AHF+ + NA+L + IL + V FHARFSA RSY Y + Sbjct: 76 AHFETSVVRPLSAWVRGTNAHL--PAWVRILWATEVAADFHARFSARARSYQYVLHNM 131 >gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum] Length = 473 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 93/274 (33%), Gaps = 31/274 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +++ Y G Y G Q+ +I+ +E AIF G + RTD Sbjct: 68 KKVAVLLGYLGKNYAGMQKNPGLRTIEEELEMAIFKAGGILPDNLYFQHKIDWVRCARTD 127 Query: 53 SGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GV ALR V + + KALN L + I + + V+ FHA+ RS Sbjct: 128 KGVSALRNVVSLKMEVGPPELDEMVKALNKLL--PEDIHVFKIMRVNNSFHAKNGVDARS 185 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCEN---MRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+Y T + K + R+ + +L S Sbjct: 186 YVYVCPTSAFEPKFATNKLVEPFKFTEETRETLNRVLSYYLGNHRFHNYTSRKESNDVSV 245 Query: 169 IRTIDHFDVNSFGNLIEIRV-----VARSFLHTQIRSFVGSLKLVGDGKW---------T 214 R I F+ + L + + + SF+ QIR +G L Sbjct: 246 FRKIIKFECSVPFILEGVEMVSINVIGESFMLHQIRKMIGCLMSFMRKGIFQDAQDKESA 305 Query: 215 STDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 + K ++A + P+AP GL D + Sbjct: 306 FDQIRKYIEATFYHQPLNLPVAPGAGLLLDHCIF 339 >gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3] Length = 266 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 65/252 (25%), Positives = 98/252 (38%), Gaps = 34/252 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHA 57 +R I Y+G+ Y+G+QRQ + +++G + A+ + + AGRTD GV A Sbjct: 1 MR-AFRIAYDGAPYYGFQRQPDVETVEGVLFDALDRLVTFEGEKPAGYAAAGRTDRGVSA 59 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L Q F+ P A N+ L T+ + FHAR+ A R+Y Y + Sbjct: 60 LAQTVAFEAPEWLTPA----AFNSEL--PGTVRAWASADAPDDFHARYDARSRTYAYYLH 113 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 A D E +R L G HDF + RTI Sbjct: 114 APGA----------------DVEAIRGVLSRLSGTHDFHNLTPEDGPTT---RTITRARA 154 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR---KECGPLA 234 N G + + + A FL +R V + V + T +E+ L +++R E A Sbjct: 155 NREGPFVVLTLRADGFLKRLVRRVVTLVVDVLRSERDPTYVERVL-SKERLSGPEGIASA 213 Query: 235 PPEGLYFDSVEY 246 P E L Y Sbjct: 214 PSEPLVLVHTAY 225 >gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis] Length = 444 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 86/267 (32%), Gaps = 37/267 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 Y G Y G QK+ +++G+I + + + + GRTD G Sbjct: 98 VAFKFAYLGWNYNGLAIQKDATPLPTVEGTILETMNKCKLVPSMVPQEYKFSRCGRTDRG 157 Query: 55 VHALRQVAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 V A+ QV D + + LN L +S + L K F Sbjct: 158 VSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRP-PKGFD 216 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y + L + A D N F Sbjct: 217 ARFSCKSRHYKYLFSSEGLDLERMQLAAKHYEGEHDFRN-------------FCKLDGSK 263 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + ++ ++ +V +FL Q+R V +L LVG G +++ L Sbjct: 264 QITNYKRTIKSSNIMHVSEDMYCFDLVGSAFLWHQVRCMVANLFLVGQGLEDPNLIKEML 323 Query: 223 QAQD--RKECGPLAPPEGLYFDSVEYS 247 + RK +A L E+S Sbjct: 324 DIEKMPRKPIYEMASDIPLILYECEFS 350 >gi|3047089|gb|AAC13601.1| contains similarity to pseudouridylate synthases [Arabidopsis thaliana] gi|10178103|dbj|BAB11490.1| unnamed protein product [Arabidopsis thaliana] Length = 364 Score = 97.3 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 89/265 (33%), Gaps = 22/265 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVA-----HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GRTD GV AL QV+ +F I L+ S + +K+ Sbjct: 153 GRTDKGVSALNQVSRSFHPNFSAKWRRYLYIFPLDDAEPLRKSGENHENFIFDENKKKQR 212 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 I++ L +E+ L + L+ + + Sbjct: 213 NGLLSEEIAEEVIMSEDDELEIEETSNALEVVEKPSDFSVSKVDQLLQHLQ---GKVLSY 269 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFL-HTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + + A L + +R V + L K L Sbjct: 270 KMFARDTKAARNEGPPTECFMYHARAAEIRLSSSMVRVLVATSIREAAAGAEDDALLKLL 329 Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +A R+ P AP EGL V Y+ Sbjct: 330 EASCRRATAPPAPSEGLCLFDVGYT 354 >gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis] gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis] Length = 401 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 25/259 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E V + A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E K L + I I + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLEAFNKDL------PEQIRIFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDC-ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + T ++ ++ E + + G +F F S + Sbjct: 187 LPTIAFAAFDDQHDQETYRIPIERLEKVSATLKLYEGTKNFHNFTSKKNFLDPSAKRFIM 246 Query: 175 FDVNSFGN-------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 S + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 247 SFTCSTPFLSPQSVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALT--EE 304 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHY 323 >gi|320094550|ref|ZP_08026316.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978465|gb|EFW10042.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 94 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R + + Y+G+ + GW Q ++QG +E + + + V AGRTD+GVHA QV Sbjct: 16 VRVRIDLAYDGTRFHGWAAQPGLRTVQGELEAVLSTLVRQPVATTVAGRTDAGVHARHQV 75 Query: 62 AHFDLVREWVPVILCK 77 AH DL + + Sbjct: 76 AHVDLPGAAWRALAPR 91 >gi|76803149|ref|YP_331244.1| tRNA pseudouridine synthase A [Natronomonas pharaonis DSM 2160] gi|121697999|sp|Q3IMP6|TRUA_NATPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|76559014|emb|CAI50612.1| tRNA-pseudouridine synthase [Natronomonas pharaonis DSM 2160] Length = 267 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 95/252 (37%), Gaps = 32/252 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 +R I Y+G+G+ G+QRQ +G +++ ++ +A+ + G AGRTD+GV Sbjct: 1 MR-AFRIAYDGTGFRGFQRQPHGETVENALFEALSSLGVAFEDGRPPGYAAAGRTDAGVS 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A Q F+ +L +ALN L ++ + V FHA A R+Y Y + Sbjct: 60 ARAQTVAFEAPAW----LLPRALNGEL--PASVRAWAAADVGDAFHATHDATARAYRYFL 113 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + S D R A L G HDF F Sbjct: 114 --------------YAPEPSADTTRARAACARLSGSHDFHNFTPDDRGTER----TLSMR 155 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC--GPLA 234 + G + + A F +R V ++ V G+ + L +AL A Sbjct: 156 LRRQGPFLVVDCRAGGFARQLVRRLVAAVAAVARGERPLSFLGRALDDDPLSGADGIAAA 215 Query: 235 PPEGLYFDSVEY 246 PPE L V Y Sbjct: 216 PPEPLLLADVVY 227 >gi|154148265|ref|YP_001406534.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] gi|153804274|gb|ABS51281.1| tRNA pseudouridine synthase A [Campylobacter hominis ATCC BAA-381] Length = 278 Score = 96.9 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 96/279 (34%), Gaps = 41/279 (14%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 + +I ++GS + G Q Q NG +++ + A+F G V A RTD GVHAL QV+ Sbjct: 6 KIRLIYSFDGSKFCGSQTQPNGKAVEDRLNSALFR-CGINEKVISASRTDKGVHALSQVS 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 W L +N + +I + + D+ F RF A RSY Y + Sbjct: 65 TTHCAAFWDLQNLRHFINRH--AKPSIYVRKIERADENFQVRFDAKARSYRYIL-NHDEF 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + P+ + +S S R I + N Sbjct: 122 SPFFSNYFYFYPEISPFLLNLSLGIFVGKHDFSEFMKSGSASGSV--REIYKAFAYRYKN 179 Query: 183 LIEIRVVARSFLHTQIRSFVGS---LKLVGDGKWTSTDLE---------------KALQA 224 I A FL Q+R V + + + +++ ++ + L+ Sbjct: 180 FTIINFKANGFLRAQVRLMVANALKCVKILEKSFSNKKIDEISNFYKNNKNLKFNEILKN 239 Query: 225 QD-----------------RKECGPLAPPEGLYFDSVEY 246 +D + APP GLY + + Y Sbjct: 240 KDFNIEKIINDNNFPLNINKAITRIPAPPNGLYLNKIWY 278 >gi|224119986|ref|XP_002331109.1| predicted protein [Populus trichocarpa] gi|222872837|gb|EEF09968.1| predicted protein [Populus trichocarpa] Length = 326 Score = 96.9 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 100/183 (54%), Gaps = 13/183 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + +EY G+ + G Q+Q N ++ G +++A G+ V + + RTD+GVHAL V Sbjct: 6 QRYLVAVEYIGTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNV 65 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ KA+N +L+ + I + ++ V FHARF A Sbjct: 66 CHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVSAHFHARFKAQE 125 Query: 110 RSYLYRIITRQA-PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y YR++ EK RAW + + LD +M+ A + LVG HDF++FR+ CQA SP Sbjct: 126 RTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQAKSP 185 Query: 169 IRT 171 RT Sbjct: 186 FRT 188 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I +RSFL+ Q+R VG LK VG G T +D+E+ L A+ P+AP GLY Sbjct: 258 HRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLY 317 Query: 241 FDSVEY 246 V+Y Sbjct: 318 LGHVKY 323 >gi|331703685|ref|YP_004400372.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802240|emb|CBW54394.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 251 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 63/249 (25%), Positives = 102/249 (40%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQATLNKAIKKVIKTDQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + + Y I Q Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDSNFNIREVEYKIYH-YYINDYQFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNS 179 + + + + +D ++ +G H+F F + RTID V Sbjct: 122 IFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I A F+ QIR + L + K ++T L + L+ K+ + +G Sbjct: 182 INNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLK-GIGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|224118612|ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1| predicted protein [Populus trichocarpa] Length = 428 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 93/312 (29%), Gaps = 68/312 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGAGR 50 + +++ Y+G + GWQ+Q +++QG +EK++ E AGR Sbjct: 107 FKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGR 166 Query: 51 TDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 TD GV AL+QV F R+ V + A+N + ++ + R Sbjct: 167 TDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRR 226 Query: 110 RSYLYRIITRQAPLALEKGRAWLIP-KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y++ + + +E +CE R L + Sbjct: 227 YLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSIISDEDELQG 286 Query: 169 IRTIDHFDVNSFGNL--------------------------------------------- 183 + F V L Sbjct: 287 AKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSP 346 Query: 184 --------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + ++A FL +R V + L K + A R+ P AP Sbjct: 347 DHEKGIRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAP 406 Query: 236 PEGLYFDSVEYS 247 P+GL V Y+ Sbjct: 407 PDGLCLVDVGYT 418 >gi|126640496|ref|YP_001083480.1| tRNA pseudouridine synthase A [Acinetobacter baumannii ATCC 17978] Length = 205 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 2/187 (1%) Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 VAHFD N+ L ISI + +D++FHARF A R Y Y + Sbjct: 1 MVAHFDTNAIRPERGWIMGANSQL--PKDISIQWIKQMDEEFHARFKATARRYRYVVYNA 58 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 AL + I + LD + M AA G H+F TFR+ CQ++ P+R + H + Sbjct: 59 PHRPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFE 118 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G + + + A FLH +R+ +G L +G G + ++ A+DRK G APP+GL Sbjct: 119 HGRYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGL 178 Query: 240 YFDSVEY 246 YF Y Sbjct: 179 YFIQCYY 185 >gi|221230534|ref|YP_002503950.1| putative pseudouridylate synthase [Mycobacterium leprae Br4923] gi|4539110|emb|CAB39831.1| putative tRNA pseudouridine synthase A [Mycobacterium leprae] gi|13093610|emb|CAC30910.1| probable pseudouridylate synthase [Mycobacterium leprae] gi|219933641|emb|CAR72052.1| probable pseudouridylate synthase [Mycobacterium leprae Br4923] Length = 249 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 14/229 (6%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLV------------REWVPVILCKA 78 +++A V V + AGRTD+GVHA QVAH D+ P L Sbjct: 2 LDEAFTTVFRTPVRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLL 61 Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK-GRAWLIPKSL 137 + + +L+++ F ARFSA+RR Y YR+ T + + P+ L Sbjct: 62 RRLSRLLPVDVRVLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPREL 121 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D ++M A++ L+G DF F A++ R + + + G LI + A +F + Sbjct: 122 DLDSMSAASRDLLGLRDFAVFCRHRHGATTI-RELQRLEWSREGYLITAHITADAFCWSM 180 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +RS +G+L VGD + T + L R AP GL F V+Y Sbjct: 181 VRSLIGALLAVGDHRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDY 229 >gi|18312431|ref|NP_559098.1| tRNA pseudouridine synthase ACD [Pyrobaculum aerophilum str. IM2] gi|24212564|sp|Q8ZXR6|TRUA_PYRAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|18159888|gb|AAL63280.1| tRNA pseudouridine synthase A [Pyrobaculum aerophilum str. IM2] Length = 256 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 91/247 (36%), Gaps = 36/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ N +E + L+ GEI + RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTMFYGFTGHPNS------LEPRLRLIFGEI--LGRGSRTDPGVSAVGN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + +N+ K+ ++ V + F+ R + Sbjct: 52 VV------MTGRKMALGYVNS--KMPKGAWAWGIAEVPEGFNPRRAK------------- 90 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 L + D + MR AA+ L + + + + + T+ DV Sbjct: 91 ----LRRYLYVAPHWGEDVDVMREAAKLLTGTHDYSSFIQLRGEKHTPTVTTVYDIDVTL 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G+LI I R F + IR +L G G + DL L+ + R P AP EGL Sbjct: 147 RGDLIFIYFAGRGFRNKMIRKMAWALLAAGRGVLSVDDLADLLK-KPRPGAVPSAPAEGL 205 Query: 240 YFDSVEY 246 + Y Sbjct: 206 VLLDIVY 212 >gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba] gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba] Length = 410 Score = 96.5 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 27/261 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ ++G QR +I+ + K + E + + A RTD GV Sbjct: 73 AILLSYCGANFYGMQRNPGMQTIEEELFKVMLKHKWITEESFEQIQISCFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPIRTI 172 + T EK + E ++ + L +F F S + Sbjct: 187 LPTVAFASFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRF 246 Query: 173 DH-------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F + + V +SF+ QIR VG + G T+ LE+AL Sbjct: 247 IMSFTSSEPFRSPQGIEFVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|296187337|ref|ZP_06855732.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] gi|296047859|gb|EFG87298.1| tRNA pseudouridine synthase A domain protein [Clostridium carboxidivorans P7] Length = 120 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 7/116 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN-----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGV 55 M M+I+Y+GS Y GWQ+Q + S+IQ IE + +TGE + V G GRTD+GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 HA VA+F + K L +L + I + +L ++FHAR++A ++ Sbjct: 61 HAENYVANFHTDSILTVEDMLKYLYEFL--PEDIVVKSLRDTSERFHARYNAKYKN 114 >gi|256384180|gb|ACU78750.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|256385012|gb|ACU79581.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. capri str. GM12] gi|296455760|gb|ADH21995.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 251 Score = 96.1 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 100/249 (40%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTDQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + + Y I Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIREVEYKIYH-YYINDHHFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNS 179 + + + +D ++ +G H+F F + RTID V Sbjct: 122 IFTNRYEYFWKHSKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I A F+ QIR + L + K ++T L + L+ K+ + +G Sbjct: 182 INNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLK-GIGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|254756838|ref|ZP_05208866.1| tRNA pseudouridine synthase A [Bacillus anthracis str. Australia 94] Length = 145 Score = 96.1 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 69/144 (47%) Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 R+ R+ Y YR++ + + + P L+ ++R A + +G HDFT+F S Sbjct: 1 RYGVERKEYRYRVLVSKTADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKT 60 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +RTI ++ + + R V FL+ +R VG+L VG GK + + L Sbjct: 61 DKKDKVRTIYEIELIEQDDELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILA 120 Query: 224 AQDRKECGPLAPPEGLYFDSVEYS 247 Q+R+ G +AP GLY V Y+ Sbjct: 121 KQNRQFAGKMAPGHGLYLWQVNYN 144 >gi|58699252|ref|ZP_00374050.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58534228|gb|EAL58429.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 100 Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 1/100 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 +RY + +EYNGS + GWQ+Q++ +SIQ IE AIF +GE + ++ GRTD+GVHAL Q Sbjct: 1 MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 VAHFD+ +E + A+N +LK + + + Sbjct: 61 VAHFDMEKECELYRIRNAINYHLKSIPIVCDEHGVVDTDW 100 >gi|323455279|gb|EGB11148.1| hypothetical protein AURANDRAFT_21872 [Aureococcus anophagefferens] Length = 264 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 96/269 (35%), Gaps = 30/269 (11%) Query: 2 IRYCMIIE--YNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +R ++ E Y G + GWQ Q N S+ A+ AGRTD GV+A Sbjct: 1 MRSKLVFELQYLGDAFAGWQPQPNERSVHDVFAAALSNAGITDCGAVAAGRTDRGVNAAH 60 Query: 60 QVAHFDLVREWVPVILCKALNAY-LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV + L L + + +L+ FHA SA + Y Y + Sbjct: 61 QVVSVRSDADRGDEDLSAVLRDVSAALPGDVRVLSCRQAPASFHAITSARSKRYAYYL-- 118 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS------------ 166 +W P LD +R A LVG DF F + + Sbjct: 119 --GFSEDAARYSWQAPPGLDVGRVRRGAALLVGERDFRAFCAPGGRKCGSTVRSLRSVEI 176 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ- 225 + T + V L+ I FL Q R VG+L +G G + +E AL Sbjct: 177 DDLETAELPFVGRVRGLLRIAFDGDGFLKHQCRKIVGALVRLGTGALSEAQVEAALADPR 236 Query: 226 -------DRKECGPLAPPEGLYFDSVEYS 247 R+ AP GL+ + V+Y+ Sbjct: 237 GAHPAVSSRRFA---APARGLWLERVDYA 262 >gi|326773999|ref|ZP_08233281.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636138|gb|EGE37042.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 113 Score = 95.7 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 42/77 (54%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALATVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCK 77 VAH D+ E + + Sbjct: 67 VAHLDVSPEAWAALPGR 83 >gi|42561241|ref|NP_975692.1| tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|62901321|sp|Q6MSQ4|TRUA_MYCMS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|42492739|emb|CAE77334.1| pseudouridylate synthase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 251 Score = 95.3 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + + Y I Q Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIREVEYKIYH-YYINDHQFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNS 179 + + + + +D ++ +G H+F F + RTID V Sbjct: 122 IFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I+ A F+ QIR + L + K ++T L + LQ K+ + +G Sbjct: 182 INNKVVIQFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQ-GIGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|183981112|ref|YP_001849403.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] gi|183174438|gb|ACC39548.1| pseudouridine synthase a, TruA [Mycobacterium marinum M] Length = 237 Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 16/217 (7%) Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVIL--------------CKALNAYLKISDTI 89 + AGRTD+GVHA QVAH D+ + +P + L +L + Sbjct: 2 RLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRV 61 Query: 90 SILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 + + Y + + + + L Sbjct: 62 LDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELL 121 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + R + ++ IR + D + G+L+ +V A +F + +RS VG+L VG Sbjct: 122 GLHNFAAFCR--RREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVG 179 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + T + L A R AP GL V+Y Sbjct: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDY 216 >gi|119872780|ref|YP_930787.1| tRNA pseudouridine synthase ACD [Pyrobaculum islandicum DSM 4184] gi|166228754|sp|A1RU12|TRUA_PYRIL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|119674188|gb|ABL88444.1| Pseudouridylate synthase [Pyrobaculum islandicum DSM 4184] Length = 255 Score = 95.3 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 35/246 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ + S +E A+ V GEI + RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFTG--HSRS----LEPALKRVFGEI--LGRGSRTDPGVSAVAN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +N+ L + ++ V + F+ R + Sbjct: 52 TVMVSQKLPIA------LVNSKL--PRGVWAWAIAEVPQSFNPRRAK------------- 90 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 D +M AA+ L G HDF +F + S I T+ V Sbjct: 91 ----FRHYLYVAPHWGEDLGSMHEAAEVLAGTHDFASFIQRRGEKISTIATVMEIKVELR 146 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI + V R F + IR ++ G G + D+ + L+ + R P AP EGL Sbjct: 147 GDLIYMHFVGRGFKNKMIRKLAWAILAAGRGIFNIRDIRELLE-RPRPGVVPSAPAEGLV 205 Query: 241 FDSVEY 246 ++EY Sbjct: 206 LLNIEY 211 >gi|301320977|gb|ADK69620.1| putative tRNA pseudouridine synthase A [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 251 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 9/249 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ ++ KAI V GA +TD+ VHAL Q Sbjct: 5 ILLSLCYDGSNYHGWINQTNAISIQTTLNKAIKKVIKTGQFKTIGASKTDTNVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I IL+ VD F+ R + + Y I Q Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PSDIKILDAKFVDPNFNIREVEYKIYH-YYINDHQFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC---QASSPIRTIDHFDVNS 179 + + + + +D ++ +G H+F F + RTID V Sbjct: 122 IFTNRYEYFWKHQKIDIIKLQEIFNLFIGEHEFKLFSGLKENEWNQYQTKRTIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVG-SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I A F+ QIR + L + K ++T L + LQ K+ + +G Sbjct: 182 INNKVVIEFKASGFIRYQIRIIIANCLNAYLNHKISTTKLVEMLQ-GIGKKTPFIIDAKG 240 Query: 239 LYFDSVEYS 247 L ++++ Sbjct: 241 LVLQKIQFN 249 >gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti] gi|108876737|gb|EAT40962.1| pseudouridylate synthase [Aedes aegypti] Length = 455 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 92/261 (35%), Gaps = 30/261 (11%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSI-----------EKAIFLVTGEIVVVHGAGRTDSG 54 +++ Y+G Y G QR +I+ + E+A + + A RTD G Sbjct: 120 IVMGYSGVNYLGMQRNPGTKTIEEELLVAMLKHNWISEEAFNQ--PQQIQFQRAARTDKG 177 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A QV L ALN L + I + + V K F+++ + R+Y Y Sbjct: 178 VSAATQVVSIKLPDNVDID----ALNKDL--PEQIRVFAVKRVTKGFNSKSNCDARTYTY 231 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG--RHDFTTFRSIHCQASSPIRTI 172 + T L +K + + L ++ S R I Sbjct: 232 TLPTMAFALHEDKVDMESYRVPEERLKVVEETLKLFEGTKNFHNFTSRKEFIDPSSKRFI 291 Query: 173 DHFDVNSFG-------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 F+ + +++ +SF+ QIR VG V G + KA + Q Sbjct: 292 MSFECEAPFVPEGSTVEFATLKIKGQSFMLHQIRKMVGLTLAVVRGLTPQETIVKAFEEQ 351 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + P AP GL + + Y Sbjct: 352 --RYGVPTAPGLGLVLNRIHY 370 >gi|81022386|gb|ABB55198.1| tRNA pseudouridine synthase [Enterococcus faecium] Length = 89 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQR-QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 M + IEY+G Y GWQR + +IQG IEK + +T E + + G+GRTD+G HA Sbjct: 1 MRNIKLTIEYDGKRYSGWQRLGDDDKTIQGKIEKVLHQMTNEEIEIIGSGRTDAGTHARG 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDT 88 QVA+F E + +N YL Sbjct: 61 QVANFKTNTEIGLAEMIDFMNRYLPRDIV 89 >gi|325068064|ref|ZP_08126737.1| tRNA pseudouridine synthase A [Actinomyces oris K20] Length = 89 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 42/77 (54%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + + Y+G+ + GW Q +++G + A+ +V E V + AGRTD+GVHA Q Sbjct: 7 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTSALAIVLREPVRLTVAGRTDAGVHAAAQ 66 Query: 61 VAHFDLVREWVPVILCK 77 V H D+ E + + Sbjct: 67 VVHLDVSPEAWAALPGR 83 >gi|261885752|ref|ZP_06009791.1| tRNA pseudouridine synthase A [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 257 Score = 94.9 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 99/261 (37%), Gaps = 20/261 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ + YNGS + G Q Q + ++++ + A+ V G V + RTD GVHA+ QV Sbjct: 1 MKIALTYSYNGSKFKGSQTQPDKNAVEDCLNFALNRV-GIFKPVVSSSRTDKGVHAISQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + W I I N+ V +FH R+ A+ RSY Y I + Sbjct: 60 SCVECGEFWNERFERLKNQINKHTKPYIYIKNIQKVSDEFHPRYDAVARSYRYIIYHDEQ 119 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + L K+L+ + + IA + +G+HDFT F + S +R I + Sbjct: 120 NVFLAD--YVHFYKTLNIQRLNIALKLFIGKHDFTPFYKVGSGEKSTVREIFYAKAYQIY 177 Query: 182 N----------------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 L I A FL Q+R V + + Q Sbjct: 178 KTKDAKFSAKFKTQKPTLTIINFKANGFLRAQVRLMVANALQACKSDENLYKFISNFKEQ 237 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 +PP GLY V Y Sbjct: 238 K-PLTRMPSPPNGLYLKRVFY 257 >gi|116072175|ref|ZP_01469443.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] gi|116065798|gb|EAU71556.1| tRNA pseudouridine synthase [Synechococcus sp. BL107] Length = 253 Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 28 QGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 Q +E AI + + AGRTD+GVHA QV HFD ALN L Sbjct: 2 QAVLETAIAQLDPLRPIQSFAAGRTDAGVHAAAQVVHFDCSGPIPAAKWAPALNGRL--P 59 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIA 145 +I + + +HA +SA+ R Y Y I + P L+ ENMR+A Sbjct: 60 ASIRVRESVERPQDWHACYSAVYRRYRYIIHNGRRPNLFLTPWTWHRYHHRLNEENMRVA 119 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + ++G HDF F + TI V G+LI + + A FL+ +R + L Sbjct: 120 LEGMIGLHDFAAFMRAGSRRLHSRTTIQDVLVEREGDLIRVEIQASGFLYGMVRLLMAQL 179 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 VG+ + + E+ + + R + AP GL Y+ Sbjct: 180 VAVGEHRLSVEAFEQRWRDRRRDQVKEAAPARGLCLLRAGYA 221 >gi|150403192|ref|YP_001330486.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C7] gi|150034222|gb|ABR66335.1| tRNA pseudouridine synthase [Methanococcus maripaludis C7] Length = 262 Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDDKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + + LK + + I Sbjct: 60 NYIVYEMDKKPVLP----RVQSNLKKDGIWVLG---------------------CKEIDT 94 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + + L K+ D E M+ A++ L+G H F + + P+RT+ ++ Sbjct: 95 FPEIEYRHYQYNLPNKNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLHDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK-WTSTDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L VG K + + ++D + P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDVGKHKFEDPEKFIELILSKDYNKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia] Length = 414 Score = 94.9 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 94/253 (37%), Gaps = 10/253 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + Y G Y G ++Q N ++I+ + KA+ V + AGRTD GV Sbjct: 49 TRVAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRMIDNRDDCNYTRAGRTDKGVS 108 Query: 57 ALRQVAHFDL-VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ V ++ + + LN L + I IL+ IVD++F+AR+ I+R Y Y Sbjct: 109 AIGNVVALNVRKIGKSDKLYAQILNRVL--PEDIQILDECIVDEKFNARYDCIKRVYKYY 166 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--HCQASSPIRTID 173 + L L D N T + R Sbjct: 167 FYKMDYNIELMTEAMLLFIGEHDFRNFCKLDVIANQNFVRTIMNITIEEVFPENAPRCST 226 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 F + L + + +FL QIR + L L+G G S+ + D K + Sbjct: 227 LFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLIGKGIEKSSVITDLFTKFDGKPNYQM 286 Query: 234 APPEGLYFDSVEY 246 AP L + E+ Sbjct: 287 APDYPLVLHNCEF 299 >gi|159905071|ref|YP_001548733.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C6] gi|238686937|sp|A9A828|TRUA_METM6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|159886564|gb|ABX01501.1| tRNA pseudouridine synthase [Methanococcus maripaludis C6] Length = 262 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGR--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVSALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L + I Sbjct: 60 NYIVYEMDKKPVLPRVQSKL-------------------------KWDGVWVLGCKEIDT 94 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + + L K+ D E M+ A++ L+G H F + + P+RT+ + ++ Sbjct: 95 FPEIEYRHYQYNLPNKNHDVELMKKASEKLIGTHYFQNLSKRDKSKVKDPVRTLYNIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L +G K + + ++D + P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIKDPEKFIELILSEDYSKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|88807910|ref|ZP_01123421.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] gi|88787949|gb|EAR19105.1| tRNA pseudouridine synthase A [Synechococcus sp. WH 7805] Length = 251 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 28 QGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 QG +E+AI + V AGRTD+GVHA QV HFD ALN L Sbjct: 2 QGVLEQAIADLDPHRPVHAVAAGRTDAGVHAAGQVVHFDSSGPIPANRWAPALNGRL--P 59 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE-KGRAWLIPKSLDCENMRIA 145 +I + +HA +SA R Y Y + + P LD M A Sbjct: 60 ASIRVREAVERPLSWHACYSATYRRYRYTLYNGRRPNLFLAPWSWHRYQARLDEHAMADA 119 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 ++G HDF F+ + + TI V G+LI++ + A FL+ +R +G L Sbjct: 120 LGGMLGSHDFAAFQRAGSRRAHSRTTIQDVSVQRRGDLIDLEIQATGFLYGMVRLLMGQL 179 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+ + T E+ + + R+E APP+GL Y Sbjct: 180 VAVGEHRLTPEQFERRWRERRREEVKDGAPPQGLCLLRAGY 220 >gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 596 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 91/289 (31%), Gaps = 45/289 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +I+ Y+G+ Y G Q+ +++ +E A+F G + V RTD Sbjct: 140 KKVAIILGYSGTNYAGMQKNPGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIRCARTD 199 Query: 53 SGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GV A+R V + K ALN L I++ ++ V+ FHA+ + RS Sbjct: 200 KGVSAIRNVVSLKMEMGPPDFEGMKIALNKEL--PKDITVFHIMRVNNSFHAKNAVDARS 257 Query: 112 YLYRIITRQAPLAL---------------EKGRAWLIPKSLDCENMRIA-------AQHL 149 Y+Y T E + D ++ Sbjct: 258 YIYVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKVLSFYLGNHRF 317 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + V ++ I VV SF+ QIR +G L Sbjct: 318 HNYTSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFMLHQIRKMIGCLISFI 377 Query: 210 DGKWTSTD---------LEKALQA--QDRKECGPLAPPEGLYFDSVEYS 247 ++ + + + P+AP GL D ++ Sbjct: 378 RKGMFEDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLDYCIFN 426 >gi|145590498|ref|YP_001152500.1| pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] gi|166228752|sp|A4WHI1|TRUA_PYRAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|145282266|gb|ABP49848.1| Pseudouridylate synthase [Pyrobaculum arsenaticum DSM 13514] Length = 257 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 36/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ N S++ + A+ + G RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFTGHPN--SLEPKLRAALGEILGR------GSRTDPGVSAVAN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + +N+ L + ++ V + F+ R + RR Sbjct: 52 VV------MTSQRLHLGYVNSKL--PRGVWAWGVAEVPEGFNPRRAKARR---------- 93 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 D E MR AA LV + + +A+ + T+ +V Sbjct: 94 -------YLYVAPHWGEDVEAMREAAAVLVGTHDYSSFIKRRGDKATPTVTTVYKIEVEQ 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G LI + V R F + IR ++ G G ++DL + ++ + R P AP EGL Sbjct: 147 RGGLIYMMFVGRGFRNKMIRKMAWAILATGRGVLKASDLRELVE-RPRPGAVPSAPAEGL 205 Query: 240 YFDSVEY 246 ++Y Sbjct: 206 VLLDIDY 212 >gi|149580877|ref|XP_001519338.1| PREDICTED: similar to FKSG32 [Ornithorhynchus anatinus] Length = 695 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 93/268 (34%), Gaps = 30/268 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + H GRTD GV A Sbjct: 63 VALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRLIERRQTANYHRCGRTDKGVSAF 122 Query: 59 RQVAHFD------------------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 QV D + + LN L I +L + V Sbjct: 123 GQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVL--PPDIRVLAWAPVGSG 180 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARF+ ++R+Y Y L A + D N+ + R+ Sbjct: 181 FSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKMDV---ANGVTSFQRT 237 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 I + + D L + V ++FL+ Q+R + L LVG +++ Sbjct: 238 ILSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFLVGQRMEGPEVIDE 297 Query: 221 ALQAQD--RKECGPLAPPEGLYFDSVEY 246 L + RK +A L ++ Sbjct: 298 LLDVEKNPRKPQYSMAVELPLVLYDCQF 325 >gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Pichia angusta DL-1] Length = 404 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 82/261 (31%), Gaps = 21/261 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTD 52 R + Y G Y G Q N +++ I KA+ + GRTD Sbjct: 58 RRIALKFSYLGWNYHGLAYQNDTSNIPTVELFILKALEKTKLIRNLDPTDCDFSRCGRTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + LN ++ + + D + H+ Sbjct: 118 KGVSAMNQVISLVVRSNLTQDEMANPLNDVKELDYVKILNKVLPEDIRIHSI-----CLR 172 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-----CQASS 167 + + + +L+ E M+ AA + VG DF F + Sbjct: 173 PPEGFDARFSCLSRHYKYFFEQANLNIEKMQQAASYFVGEQDFRNFCKVDGSKQIVNYKR 232 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ-- 225 I + + +FL Q+RS + L LVG + K L + Sbjct: 233 KIISSSIERTKFGHKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEPEIVRKLLDVKLF 292 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + +A P L E+ Sbjct: 293 PGRPNYTIASPLPLVLYDCEF 313 >gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi] gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi] Length = 477 Score = 94.6 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 85/284 (29%), Gaps = 48/284 (16%) Query: 2 IRYCMIIEYNGSGYFGWQ----RQKNGSSIQGSIEKAIFLVTG---------EIVVVHGA 48 R + I Y G+ Y G Q N +++ ++ KA+ G V H + Sbjct: 116 RRVAIFIGYLGTNYNGSQTSNFTNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVHFHRS 175 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GVHA V L+ + + L + + I V K F+A+ Sbjct: 176 SRTDKGVHAASNVLEMKLLMKPGLEEEMRKL-----LPEDIVFYGYKKVSKSFNAKEHCT 230 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSL-------------DCENMRIAAQH------- 148 R+Y Y + + + D N + Sbjct: 231 ARTYEYLLPAFALSPDPKAATWFGQINIDKITKEDVESENLNDIYNYDPTDEQIEKANRV 290 Query: 149 ---------LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 T + ++++ V SF++ QIR Sbjct: 291 LKNFVGTNSFHNYTQLTKAKPNSFNRHITKFECSKAFEIDGMKVVKLTVTGSSFIYNQIR 350 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 VG + V G +D ++ ++ PLAP GL Sbjct: 351 KMVGFMIAVMRGSLNESDFSTSVD-KEVTANVPLAPANGLLLCE 393 >gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM 70294] Length = 446 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 90/257 (35%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G I +A+ + + GRTD G Sbjct: 97 IALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTDKG 156 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV + P + N +I + L D + Sbjct: 157 VSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDD-----IRVSAVCLRPP 211 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + + + LD E M AA++ G +DF F + Q ++ RTI Sbjct: 212 KDFDARFSCKHRHYKYLFNKEGLDLEKMEQAAKYYEGENDFRNFCKLDGSKQITNYKRTI 271 Query: 173 DHFDVNSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKE 229 + + ++ +FL Q+R + +L LVG G T ++ L + RK Sbjct: 272 ISASIMHVSGDFYCFDLIGSAFLWHQVRCMMANLFLVGQGLEDHTLIKDMLDIEKTPRKP 331 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 332 IYDMASDVPLILYDCKF 348 >gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi] Length = 443 Score = 94.2 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 23/258 (8%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDSGVH 56 +++ Y+G YFG QR +I+ + +A+ + E + A RTD GV Sbjct: 108 ILLGYSGVDYFGMQRNPGTRTIEEDLLRAMLKQEWINDEGFRQPQQIQFQRAARTDKGVS 167 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A QV L ALN L + + A +Y Sbjct: 168 AAVQVVSIKLPDNLDVA----ALNGELPPQIRVYAVKRVTKGFNSKTNCDARTYTYTLPT 223 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 I A + + + + +G +F F S ++ Sbjct: 224 IAFAANDEKDLDILTYRAPADRLQRVNEVLALYLGTKNFHNFTSRKEFIDPSVKRYIMEF 283 Query: 177 VNSFGN--------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 IR+ +SF+ QIR VG V G + +EKA + Sbjct: 284 ECGTPFVPDGTTAEFATIRIKGQSFMLHQIRKMVGLTLAVVRGLSQADIIEKAF--GQER 341 Query: 229 ECGPLAPPEGLYFDSVEY 246 P AP GL + Y Sbjct: 342 YGIPTAPGLGLVLSRIHY 359 >gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 364 Score = 94.2 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 90/277 (32%), Gaps = 46/277 (16%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDSGVHAL 58 + Y G Y+G QR +I+ + A+ +T E + A RTD GV A+ Sbjct: 2 LGYLGKNYYGMQRNPGMKTIEEDLVNALLKANLITTEQFENLRTINFQRAARTDKGVSAV 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 RQ+ L I +N +L D I + + V K F+++ R+Y Y I + Sbjct: 62 RQIVSLKLPENPDKTI----INQFL--PDVIRVFGIKRVTKGFNSKNQCDARTYRYIIPS 115 Query: 119 RQAPLALE-----------------------KGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + + + + + G H+F Sbjct: 116 FTFAMEDQSLLKMGEEVDINERIKQISTIDGEPYIDYRLSIESLNRLNSILKLFEGTHNF 175 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVG 209 F S R + + V +SF+ QIR V ++ V Sbjct: 176 HNFTSKTKPLDPRARRYIINFHCVDTFVSKGIEFVVLEVKGQSFMLHQIRKMVATVIAVA 235 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +A + K P+AP GL V Y Sbjct: 236 RNIIPEETINEAF--KTVKMEIPIAPSLGLCLCHVHY 270 >gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus cuniculus] Length = 391 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 98/269 (36%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 57 RKIVLLLAYSGKGYHGMQRNVGSSQFRTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 115 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 116 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCD 170 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + + G H F F S Sbjct: 171 ARTYFYMLPTFAFAHKDRDPQDETYRLSAETLQRVNRLLACYQGTHSFHNFTSQKGPREP 230 Query: 168 PIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R IRV +SF+ QIR VG + + G + LE++ Sbjct: 231 SARRYILQMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERS 290 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 D K P AP GL + V Y+ Sbjct: 291 W--GDEKVDVPKAPGLGLVLERVHFEKYN 317 >gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor] Length = 459 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 89/257 (34%), Gaps = 30/257 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + + GRTD GV A Sbjct: 124 VALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGVSA 183 Query: 58 LRQVAHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV D++ E + K LN L I +L V FHARF+ Sbjct: 184 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 241 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R Y Y + + A D N R S Sbjct: 242 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDA---ANVSNYRRRITEFTIS 298 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--A 224 + R ++ + L + + +FL Q+R V L L+G G + + ++ L Sbjct: 299 ACDRRSNNDE------LCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITK 352 Query: 225 QDRKECGPLAPPEGLYF 241 RK +AP L Sbjct: 353 TPRKPQYKMAPELPLIL 369 >gi|2446915|dbj|BAA22474.1| tRNA pseudouridine synthase I [Synechococcus elongatus PCC 6301] Length = 81 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 41/66 (62%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 R ++I+Y G G+ GWQRQ S+QG +E AI V G V V AGRTD+GVH QV Sbjct: 15 QRIALVIQYLGQGFCGWQRQPRQRSVQGELESAIAAVVGHPVSVQSAGRTDTGVHRAAQV 74 Query: 62 AHFDLV 67 AHF+ Sbjct: 75 AHFETT 80 >gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 93/265 (35%), Gaps = 35/265 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAI--FLVTGEIVV--VHGAGRTDSG 54 + + Y+G+ Y G QR ++I+ I AI V +I GRTD G Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKVVDDIGTADYIAGGRTDKG 124 Query: 55 VHALRQVAHFDLVREWVPVILCKA-----------LNAYLKISDTISILNLSIVDKQFHA 103 VHA+ V + + + +N L D I I + + + F A Sbjct: 125 VHAVNNVISLFVNSRLSEDEINENVTVGERNFVAIINRQL--PDDIWITSWAPISFDFSA 182 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 RFS R Y Y + + L K A + D N A I Sbjct: 183 RFSCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRVCFAADIKQ 242 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + ++ + A FL+ QIR + L LVG+ ST +++ L Sbjct: 243 VPN-------------MSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLD 289 Query: 224 AQD--RKECGPLAPPEGLYFDSVEY 246 + R+ A P+GL EY Sbjct: 290 VEKYPRRPSYKYANPDGLVLIDCEY 314 >gi|224102643|ref|XP_002312761.1| predicted protein [Populus trichocarpa] gi|222852581|gb|EEE90128.1| predicted protein [Populus trichocarpa] Length = 232 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHAL 58 ++ ++I Y+G+ Y GWQ Q+ +IQ +EKA+ T + + + GA RTD GVHA Sbjct: 57 FKWRLLISYDGTHYKGWQFQQTPPTIQCILEKALTRATKLERKDLHLVGASRTDGGVHAW 116 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QVAHF + + A L D ++V +FHARFSA ++Y Y+I Sbjct: 117 GQVAHFVTPFNYDSLDSIHAALNGLLPPDIRVREISAVVP-EFHARFSAKGKTYHYKIFN 175 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 ++ A+ + L+ MR AA H +G DF+ F + Sbjct: 176 DTVMDPFQRLYAYHVTHKLNAAVMREAANHFIGTRDFSAFVNSSRND 222 >gi|167583949|ref|ZP_02376337.1| tRNA pseudouridine synthase A [Burkholderia ubonensis Bu] Length = 193 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 2/167 (1%) Query: 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDC 139 NA+L T+++ + FHARFSA R+Y Y + + RA I LD Sbjct: 2 NAFL--PPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPVRSPMLDARAGWIHTPLDD 59 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + MR AA HL+G HDF+ FRS CQ+ +P++ + D+ G+ + R A +FLH +R Sbjct: 60 DAMRAAAAHLIGEHDFSAFRSSECQSKTPVKHLYQIDIRRAGHFLHFRFRANAFLHHMVR 119 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +G L VG G++ + + L +DR P +GLY V Y Sbjct: 120 NLMGCLVAVGRGRYPAEWIADVLAGRDRNRAAPTFMADGLYLAHVGY 166 >gi|134046431|ref|YP_001097916.1| tRNA pseudouridine synthase A [Methanococcus maripaludis C5] gi|132664056|gb|ABO35702.1| tRNA pseudouridine synthase [Methanococcus maripaludis C5] Length = 262 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 33/248 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDKVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + L + I Sbjct: 60 NYVVYEMDKKPVLPRVQSKL-------------------------KWDGIWVLGCKEIEI 94 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVN 178 + + L K+ D E M+ A++ L+G H F + + P+RT+ ++ Sbjct: 95 FPEIEHRHYQYTLPNKNHDVELMKKASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKIS 154 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW-TSTDLEKALQAQDRKECGPLAPPE 237 S I I + SFL +R + L +G K + + +++ K+ P +P E Sbjct: 155 SNDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIEDPEKFIELILSEEYKKGYPPSPAE 214 Query: 238 GLYFDSVE 245 GL V+ Sbjct: 215 GLILVDVK 222 >gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex] Length = 319 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 17/258 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 ++ +++ Y+G Y G Q +++G + +A + + + V A RTD Sbjct: 3 KKFAILLSYSGQNYLGMQFNHGFKTVEGELFQAFMKLEIMDDESFKSPQTVHFQRAARTD 62 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+RQV + ++ LN+ L + + + SY Sbjct: 63 KGVSAVRQVISLKIRTPDEDLVNQ--LNSLLPNCIKVFAMRKVTGGFNSKIACDSRSYSY 120 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENM-RIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + + K LD N + H+FT+ R + T Sbjct: 121 VMPTFAFTSKEVAPTHGYRVTSKILDEVNSLLSVFKGTRNYHNFTSGRPAQDPSCKRYIT 180 Query: 172 IDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 +E + +SF+ QIR +G V G L+KA + + Sbjct: 181 QFSCGDPFMIKEVEFVKITIKGQSFMLHQIRKMIGLTISVMRGFVPREILDKAF--KMER 238 Query: 229 ECGPLAPPEGLYFDSVEY 246 P AP L + Y Sbjct: 239 VNVPTAPSLNLLLEEPHY 256 >gi|218460354|ref|ZP_03500445.1| tRNA pseudouridine synthase A [Rhizobium etli Kim 5] Length = 141 Score = 93.8 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 76/116 (65%), Positives = 92/116 (79%) Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVA 190 W +PK+LD E M AAQ LVGRHDF+TFRS HCQA+SP+RT+D DV G LIEIR A Sbjct: 5 WWVPKTLDHEVMHAAAQRLVGRHDFSTFRSAHCQANSPVRTLDRLDVTRSGALIEIRATA 64 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SFLH QIRSF G+LKL G+GKWT D+E AL+A++RK CGP+APP+GLYF V+Y Sbjct: 65 QSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLYFLQVDY 120 >gi|322792295|gb|EFZ16279.1| hypothetical protein SINV_03177 [Solenopsis invicta] Length = 290 Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 110/268 (41%), Gaps = 37/268 (13%) Query: 16 FGWQRQ------KNGSSIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHALRQVAHFDL 66 G QRQ ++ SIQG+IE A+ V+ + + V+ + RTD+GVHA AH +L Sbjct: 1 RGLQRQSSDNFVRDTDSIQGAIETALLTVSPKSLIRPVLTLSSRTDAGVHAFGNTAHVEL 60 Query: 67 VREWVPVIL----CKALNAYL-KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ++ + K +N Y K I +L+ + + FHAR S R+YLYR + + Sbjct: 61 ENKYNTIYNSSDVKKYVNRYFAKCGHFIRLLDSTPITNDFHARHSCKSRTYLYRFMIPKI 120 Query: 122 PLALEK------GRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASSP 168 L D + R Q +G DFTTF R I + Sbjct: 121 CNEQRISLPETIHTHHLRAYDFDIDKARRGIQLFMGTKDFTTFSAKSITSRKIQYVRALH 180 Query: 169 IRTIDHFDVNS-------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 T++ +SFL+ Q+R +G+L +G GK T D+ Sbjct: 181 AFTLEEAQPLMPFDPLSNNFTYWHFTCKGKSFLYNQVRRMIGALIALGLGKITEKDITVM 240 Query: 222 LQAQDRKECGP---LAPPEGLYFDSVEY 246 LQ P PP GL+ +VEY Sbjct: 241 LQVPSHHNWDPRVTPVPPNGLHLLNVEY 268 >gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis] gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis] Length = 409 Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 100/259 (38%), Gaps = 25/259 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQ+ L E A NA L + I + + V K F+A+ R+Y Y Sbjct: 133 SAARQICSVKLPEELDLE----AFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + T A E + + ++ + G +F F S + Sbjct: 187 LPTVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFIM 246 Query: 175 -------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 247 AFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLERALT--EE 304 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHY 323 >gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis] gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis] Length = 464 Score = 93.4 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 83/276 (30%), Gaps = 31/276 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 R + + Y G G+ Q+ ++++ + A+ E GRTD GV Sbjct: 80 RRIALRLSYLGWDMHGFASQEKIDNTVEAHLFDALIKACLVKSRESCSYSRCGRTDKGVS 139 Query: 57 ALRQVAHF----------------------DLVREWVPVI-LCKALNAYLKISDTISILN 93 A QV D + + I LN L + Sbjct: 140 AFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKEIRVLAWA 199 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAP-LALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 +D S + YL+ + L + + M +A + Sbjct: 200 PVELDFDARFSCSYRKYKYLFPSANLDIDLMNLASKKLEGEHDFRNFCKMDVANGVIQFT 259 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + T+F+ ++ ++ + E + +FL Q+R + L +VG G Sbjct: 260 RNITSFKVQKVSNATYSAPGENKAKQRGYEMCEAVICGSAFLWHQVRCMMSILLMVGQGL 319 Query: 213 WTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 ++ L + ++ +A L Y Sbjct: 320 EQPEVIDWLLDIEKCPQRPQYNMASELPLVLYDCVY 355 >gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895] gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895] Length = 432 Score = 93.4 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +++G+I +A+ + + GRTD G Sbjct: 84 IALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTDKG 143 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV + P N +I + L D + A Sbjct: 144 VSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAI-----CLRPP 198 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + + LD M AA+ G HDF F + Q ++ RTI Sbjct: 199 KGFDARFSCKYRHYKYLFNKSGLDLSKMEEAARLYEGEHDFRNFCKLDGSKQITNFKRTI 258 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + G++ ++ +FL Q+R + +L +VG G T + L + + Sbjct: 259 LSAKILHVDGDMYCFDLLGSAFLWHQVRCMMANLFIVGQGLEPLTLINNLLDVEKNPQKP 318 Query: 232 P--LAPPEGLYFDSVEY 246 +A L ++ Sbjct: 319 VYDMASDIPLILYDCKF 335 >gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis] gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis] Length = 408 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 25/259 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + K + +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIASFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E + +A NA L D I + + V K F+A+ R+Y Y Sbjct: 133 SAARQVCSVKLPEE----LDLQAFNADL--PDQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDH 174 + T E+ L + + L +F F S + Sbjct: 187 LPTIAFAAFDEQHEQETYRIPLKLQEVVNTTLKLYEGTKNFHNFTSKKNFLDPSAKRYIM 246 Query: 175 FDVN-------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + ++V +SF+ QIR VG + G T+ LE+AL + Sbjct: 247 SFTCSAPFLSPQSIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLERALT--EE 304 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHY 323 >gi|73956519|ref|XP_546716.2| PREDICTED: similar to pseudouridylate synthase-like 1 [Canis familiaris] Length = 294 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 73/257 (28%), Positives = 110/257 (42%), Gaps = 31/257 (12%) Query: 16 FGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 G QR + +E+A + V + RTD+GVHAL AH D+ R Sbjct: 30 RGSQR---AVGVLNYLEEAAKRLNSVVPVRFTISSRTDAGVHALSNAAHLDVQRRSGQPP 86 Query: 75 LC-----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 +ALNA+++ +L V FHAR +A R+YLYR++T Sbjct: 87 FSPEVLAEALNAHVRHPAI-RVLQAFRVPSDFHARHAATSRTYLYRLVTGCHRPDQLSVF 145 Query: 130 AWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG--- 181 LD + M+ AAQHL+G HDF F+S +S +RT+ V+ Sbjct: 146 ERNRCWPLRADCLDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSP 205 Query: 182 ---------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKE 229 + + +RSFL+ Q+R L VG G ++ L+++D R + Sbjct: 206 FVLAQEKRLHFWNLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQ 265 Query: 230 CGPLAPPEGLYFDSVEY 246 +AP GL+ SV Y Sbjct: 266 AR-VAPAHGLFLKSVLY 281 >gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis] Length = 455 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 94/267 (35%), Gaps = 29/267 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q+N + +I+ + +A+ + H GRTD GV A Sbjct: 66 VALKIAYLGWEYQGFASQENTNNTIEEKLFEALGKTRLVKNRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPV-----------------ILCKALNAYLKISDTISILNLSIVDKQF 101 QV DL LN L I +L + V+ F Sbjct: 126 GQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVL--PPDIRVLAWAPVEPNF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARF+ ++R+Y Y +AL A + D N+ + R+I Sbjct: 184 SARFNCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDFRNLCKMDV---ANGVTSFHRTI 240 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 P+ + + + V ++FL+ Q+R + L L+G +++ Sbjct: 241 LAAEVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMMAILFLIGQRMERPEIIDEL 300 Query: 222 L--QAQDRKECGPLAPPEGLYFDSVEY 246 L + RK +A L ++ Sbjct: 301 LDIEKNPRKPQYSMAVEFPLVLYDCDF 327 >gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior] Length = 398 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 93/280 (33%), Gaps = 45/280 (16%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEI------VVVHGAGRTDSGV 55 M++ Y G Y+G QR +I+ + A+ +T E + A RTD GV Sbjct: 46 AMLLGYVGKDYYGMQRNPGMKTIEEDLIIALLKADLITKEQFENTRAINFQRAARTDKGV 105 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+RQ+ L + +N +L D I + + V K F+++ R+Y Y Sbjct: 106 SAIRQIVSLKLPENSNKTV----INQFL--PDAIRVFGIKRVTKGFNSKNQCDARTYRYV 159 Query: 116 IITRQA----------------PLALEKGRAWLIPKSLDCENMRIAAQHLV--------G 151 I + +++ D + L Sbjct: 160 IPSYAFALEDQSLLKLGEEVDEDERIKQLSIIDGKPYTDYRLSPESLDRLNSILKLFEGS 219 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI-----EIRVVARSFLHTQIRSFVGSLK 206 + + R I F L + + +SF+ QIR V + Sbjct: 220 HNFHNFTSKVKPLDPRARRYIISFCCTETFVLNDIELAVLEIKGQSFMLHQIRKMVAIVI 279 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + +++A + D K PLAP GL V Y Sbjct: 280 AIARNMISKETIDEAFKTMD-KMDLPLAPSLGLCLCHVHY 318 >gi|301629805|ref|XP_002944022.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 207 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 6/192 (3%) Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD P + N +L I++ V FHAR A R Y Y ++ Sbjct: 1 MQVVHFDTPLRRTPFAWVRGSNTFL--PPDIAVQWAQAVPASFHARACATARRYAYVLLQ 58 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH---- 174 ++E R + + LD MR AAQHL+G HDFT+FR+ CQA +P++T+ Sbjct: 59 SPVRPSVESARVGWVFQPLDGAAMRAAAQHLLGEHDFTSFRASACQAKTPVKTLHRIGIT 118 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 +FLH +R+ +G L VG G+ + + + L A+ R P Sbjct: 119 RRGAGPHGYWRFEFEGNAFLHHMVRNIMGCLIAVGQGRKPADWMAEVLAARSRDAAAPTF 178 Query: 235 PPEGLYFDSVEY 246 P+GLYF Y Sbjct: 179 APDGLYFLGPVY 190 >gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei gambiense DAL972] Length = 458 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 85/255 (33%), Gaps = 20/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G RQ +++ + A+ + GRTD GV Sbjct: 55 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 114 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V F + ++ + SY+ Sbjct: 115 ALGNVVSFTSRASSWATDEH----------QQPPLDYCEKLNNVLPPTIRIVGWSYVNAD 164 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHF 175 + R + + L+ E MR A +L G H+F F ++ R + H Sbjct: 165 FDARFSCTGRTYRYYFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNNYERHVRHA 224 Query: 176 DVNSFGNLI----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D+ L + A SFL+ QIR + L LVG +++ L DRK Sbjct: 225 DIVGSEMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGDRKPVY 284 Query: 232 PLAPPEGLYFDSVEY 246 PLA L + Sbjct: 285 PLADATPLVLWECHF 299 >gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus] Length = 480 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 28/268 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 64 VALRIAYLGWGYQGFASQENTTNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNA-----------------YLKISDTISILNLSIVDKQF 101 QV DL ++ ++ N+ + I IL + VD F Sbjct: 124 GQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRILAWAPVDPGF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + A + D N+ R+I Sbjct: 184 SARFSCLERTYHYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDV---ANGVINFQRTI 240 Query: 162 -HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + +++ L + V ++FL+ Q+R + L L+G G +++ Sbjct: 241 LSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPDIIDE 300 Query: 221 ALQAQD--RKECGPLAPPEGLYFDSVEY 246 L + +K +A L ++ Sbjct: 301 LLNVEKNPQKPQYSMAVEFPLVLHDCKF 328 >gi|118101846|ref|XP_417852.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 390 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 93/271 (34%), Gaps = 33/271 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 68 VALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDDRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDLVREWVPV---------------------ILCKALNAYLKISDTISILNLSIV 97 QV DL LN L I +L + V Sbjct: 128 GQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVL--PPDIRVLAWAPV 185 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARFS ++R+Y Y +AL A + D N+ Sbjct: 186 EPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDV---ANGVINF 242 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 R+I + + L + V ++FL+ Q+R + L L+G Sbjct: 243 QRTILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEI 302 Query: 218 LEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +++ L + RK +A L E+ Sbjct: 303 IDELLDVEKNPRKPQYSMAVEFPLVLYDCEF 333 >gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura] gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura] Length = 409 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 25/259 (9%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 73 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFDQVQIACFQRAARTDKGV 132 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQ+ L E A NA L + I + + V K F+A+ R+Y Y Sbjct: 133 SAARQICSVKLPEELDLE----AFNADL--PEQIRLFGVERVTKGFNAKDQCNARTYTYT 186 Query: 116 IIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + T A E + + ++ + G +F F S + Sbjct: 187 LPTVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTKNFHNFTSKKNFLDPSAKRFIM 246 Query: 175 -------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + ++V +SF+ QIR VG + G T+ L++AL + Sbjct: 247 AFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLDRALT--EE 304 Query: 228 KECGPLAPPEGLYFDSVEY 246 + P+AP GL D+V Y Sbjct: 305 RLDLPMAPGLGLVLDTVHY 323 >gi|255086349|ref|XP_002509141.1| predicted protein [Micromonas sp. RCC299] gi|226524419|gb|ACO70399.1| predicted protein [Micromonas sp. RCC299] Length = 452 Score = 93.0 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 33/167 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT------------------GEIV 43 RY + ++Y+G+ + G+QRQ N ++QG +E A+ + Sbjct: 63 PRYLLRVQYDGTNFHGFQRQANARTVQGCVEDALDAFAGGGGGGGGGGGGDGADTMRSSI 122 Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK------------ALNAYLKI---SDT 88 V HG+ RTD+GVHAL H DL + ALN +LK D Sbjct: 123 VTHGSSRTDAGVHALDNTMHVDLPPRVSRREPTRALPPHEPHVVASALNHFLKKRGAPDV 182 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 + + FHARFSA R+Y YR+ P +L + Sbjct: 183 AVTRCIRVDPNAFHARFSATGRTYHYRMHVSPTPPSLFERGRVWHVC 229 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 + V SFL+ Q+R V +L+ VG G+ + L A+ + +AP GLY V Sbjct: 372 VVTAVGPSFLYHQVRLMVATLRAVGAGEIDPASVPALLAARTPRAVPAMAPAHGLYLGRV 431 Query: 245 EY 246 Y Sbjct: 432 HY 433 >gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo] Length = 710 Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 96/271 (35%), Gaps = 33/271 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRLVDSRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPV---------------------ILCKALNAYLKISDTISILNLSIV 97 QV DL LN L I +L + V Sbjct: 126 GQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVL--PPDIRVLAWAPV 183 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARFS ++R+Y Y +AL + A + D N+ Sbjct: 184 EPDFSARFSCLKRTYRYFFPCADLDVALMQAAAQRYVGTHDFRNLCKMDV---ANGVINF 240 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 R+I + + + L + V ++FL+ Q+R + L L+G Sbjct: 241 QRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEI 300 Query: 218 LEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +++ L + RK +A L E+ Sbjct: 301 IDELLDVEKNPRKPQYSMAVEFPLVLYDCEF 331 >gi|171184695|ref|YP_001793614.1| tRNA pseudouridine synthase ACD [Thermoproteus neutrophilus V24Sta] gi|229470755|sp|B1YAT9|TRUA_THENV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|170933907|gb|ACB39168.1| tRNA-pseudouridine synthase I [Thermoproteus neutrophilus V24Sta] Length = 255 Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 35/246 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y I Y+G+ ++G+ S++ + +A+ V G RTD GV A+ Sbjct: 1 MP-YLYRIAYDGTLFYGFTGHP--RSLEPHLRRALGDVLGR------GSRTDPGVSAVGN 51 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + A N+ L + + + V + F+ R + R Sbjct: 52 VVMTSAKVQPA------AANSKL--PRGVWVWAAAEVPEGFNPRRARSRH---------- 93 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 D ++MR AA+ L G HD+ +F + +S + TI V + Sbjct: 94 -------YLYVAPHWGEDLDSMREAAELLAGTHDYASFVQRRGEPASTVTTIFSITVETR 146 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+L+ + V R F + IR ++ G G D+ L+ + + P AP EGL Sbjct: 147 GDLVFLHFVGRGFRNKMIRKLAWAILAAGRGVLRKRDIADLLE-RPKPGAVPSAPAEGLV 205 Query: 241 FDSVEY 246 ++Y Sbjct: 206 LLDIDY 211 >gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni] gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni] Length = 412 Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 94/261 (36%), Gaps = 21/261 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ YFG QR +I+ + K + E V + A RTD GV Sbjct: 67 AILLSYCGANYFGMQRNPGMQTIEEELFKVMLKHKWITEDSFEQVQIACFQRAARTDKGV 126 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L + + L +++ + Q +AR + Sbjct: 127 SAARQVCSVKLPDDLDLKAFNEDLPEQIRLFGVERVTKGFNAKDQCNARTYTYTLPTVAF 186 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + E+++ + L F + + + + F Sbjct: 187 APCQSESDKEAQPPEEQSTYCISPEHLQKVRETLQLYEGTKNFHNFTSKKNFLDPSAKRF 246 Query: 176 DVNSFG----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 + + ++V +SF+ QIR VG + G T++ LE+AL Sbjct: 247 IMLFSCSDPFKSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTSTLERALT-- 304 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + + P+AP GL D+V Y Sbjct: 305 EERLDLPMAPGLGLVLDTVHY 325 >gi|226325156|ref|ZP_03800674.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] gi|225206504|gb|EEG88858.1| hypothetical protein COPCOM_02948 [Coprococcus comes ATCC 27758] Length = 255 Score = 92.6 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 74/247 (29%), Positives = 112/247 (45%), Gaps = 9/247 (3%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + IEY+GS Y G+ +K +SI+ + AI VTG+ + A +T+ GVHA Q Sbjct: 12 MTTIKLTIEYDGSRYPGFSTKKKSTSIESKLTLAIRDVTGQSTQLFAAVKTEPGVHAAHQ 71 Query: 61 VAHFDLVREWVPVIL---CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + F L +E LNA L I++ +L I D++F A + +Y RI Sbjct: 72 IVSFQLEKESFSDNTELLKMKLNAAL--PADIAVTSLEIADERFVASLAVKSCTYTCRIA 129 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 T A + ++ +SLD E+M+ AAQ L G HDF F + S +RT++ + Sbjct: 130 TDPAAALFSRPYTCVVTESLDLESMQQAAQLLTGTHDFAAFSN-GRTRKSTVRTVETIKI 188 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N LI+I++ A SFL + G++ G K T L + P P Sbjct: 189 NREDQLIQIQLTANSFLRHMPQLLAGTILTAGKEKKTDG---TTLTLAGVESVAPACPSH 245 Query: 238 GLYFDSV 244 V Sbjct: 246 AFTLTDV 252 >gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus] Length = 330 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 95/287 (33%), Gaps = 50/287 (17%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEI------VVVH 46 M + +++ Y G Y+G QR +I+ + A+ +T E + Sbjct: 40 MQKIKRKNHAILLGYLGKDYYGMQRNPGMKTIEEDLVTALLKADLITTEHFKNIRSISFQ 99 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 A RTD GV A+RQ+ L + ++ K L D I I + V K F+++ Sbjct: 100 RAARTDKGVSAIRQIVSLKLPEKPDKTVINKFL------PDVIKIFGIKRVTKGFNSKNQ 153 Query: 107 AIRRSYLYRIITRQA----------------PLALEKGRAWLIPKSLDCENMRIAAQHLV 150 R+Y Y I T +++ +D + L Sbjct: 154 CDARTYRYIIPTFAFAPEDLTLLKIGEEINEEERIKQLSTIDGKSYVDYRLSPESLNRLN 213 Query: 151 GRHDFTTFRSIHCQASSPIRT-------------IDHFDVNSFGNLIEIRVVARSFLHTQ 197 +S ++ +++ + + +SF+ Q Sbjct: 214 SILKLMEGTHNFHNFTSKVKPLDPRAQRYIIKFHCVETFISNGMEFAILEIKGQSFMLHQ 273 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 IR V + + + + +A + DR P+AP GL V Sbjct: 274 IRKMVAVVVGIARNIISEEIINEAFKTMDR-LEIPIAPSLGLCLCHV 319 >gi|153840131|ref|ZP_01992798.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] gi|149746249|gb|EDM57337.1| tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ3810] Length = 142 Score = 92.6 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 67/115 (58%) Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 LD + M A Q+L+G +DF++FR+ HCQ+ SP R + H +V G+ + I + A Sbjct: 7 HYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDYVVIDIKAN 66 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +F+H +R+ GSL VG G+ ++ L+A+DRK G A EGLY V+Y Sbjct: 67 AFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYLVDVDY 121 >gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica] Length = 402 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 25/260 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIV-------VVHGAGRT 51 + + Y+G+ Y G QR ++I+ I A + V GRT Sbjct: 65 RKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDA---MLRTKVVDDIGTADYIAGGRT 121 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA+ V + +N + + + + ++ + Sbjct: 122 DKGVHAVNNVISLFVNSRLSEDE----INENVTVGERNFVAIINRQLPDD---IWITSWA 174 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + + LD E M+ AA +L+G HDF F + + +R Sbjct: 175 QISSDFSARFNCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRV 234 Query: 172 IDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-- 226 D+ + ++ + A FL+ QIR + L LVG+ ST +++ L + Sbjct: 235 CFAADIKQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKYP 294 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R+ A P+GL EY Sbjct: 295 RRPSYKYANPDGLVLIDCEY 314 >gi|320165424|gb|EFW42323.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 387 Score = 92.3 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 100/262 (38%), Gaps = 19/262 (7%) Query: 3 RYCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 R+ + +EY+G+ + G + S+ +++AI T + V + RTD+GVHAL Sbjct: 79 RFLLAVEYDGTAFSGVAASPDEPPDRPSVGSVLDRAIAQATRQDARVTFSSRTDAGVHAL 138 Query: 59 RQVAHFDLVRE-------WVPVILCKALNAYLKI------SDTISILNLSIVDKQFHARF 105 H D+ AL + + +S+ + V +Q HARF Sbjct: 139 WNTCHVDIEPRTRRGDLMTQQQWTPLALGSAINYFSRGKVPYPMSVRAVCAVPEQVHARF 198 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +A +R Y+YR++ ++ A + + + E + A+ + + + Sbjct: 199 NATQRVYIYRVVVGESSAASVFDLRYHLTAAPIDE-SLVQARTTTRHISQFSVQIDKHKT 257 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +P ++ + + FL+ Q+R VG + V GK T DL Sbjct: 258 DNPWANSLPDALSKPTVALTFTIRGSGFLYHQVRIMVGHVLSVASGKSTLADLVHLRDNP 317 Query: 226 DRKECGP-LAPPEGLYFDSVEY 246 + P GL V Y Sbjct: 318 QVIHLHKDMLPAHGLCLKEVCY 339 >gi|45357831|ref|NP_987388.1| tRNA pseudouridine synthase A [Methanococcus maripaludis S2] gi|62901319|sp|Q6M0K2|TRUA_METMP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|45047391|emb|CAF29824.1| tRNA pseudouridine synthase Related [Methanococcus maripaludis S2] Length = 262 Score = 92.3 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 31/247 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALR 59 Y I Y+G +Q Q +G ++ I A+ +L + V ++ GRTD GV AL Sbjct: 2 YIFKIAYDGK--LSFQTQPHGETVCDKISNALLDCGYLDNKDRVPLYHGGRTDRGVAALG 59 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 +++ ++ V + + LK + Y+ Sbjct: 60 NYVVYEMDKKPVLP----RVQSKLKWDGIWVLGCKK-------IEIFPEIEHRHYQYTLP 108 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 +E + + + + + + + + P+RT+ ++S Sbjct: 109 NKNHDVELMK-------------KASEKLIGTHYFQNLSKRDKTKVKDPVRTLYDIKISS 155 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT-STDLEKALQAQDRKECGPLAPPEG 238 I I + SFL +R + L +G K + + ++D K+ P +P EG Sbjct: 156 NDYFITIDIFGESFLWNMVRRIIRLLSDIGKHKIENPEKFIELILSEDYKKGYPPSPAEG 215 Query: 239 LYFDSVE 245 L V+ Sbjct: 216 LILVDVK 222 >gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei] gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 428 Score = 92.3 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 85/255 (33%), Gaps = 20/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G RQ +++ + A+ + GRTD GV Sbjct: 25 RKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERLRFVEPSGPKDFSRCGRTDKGVS 84 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V F + ++ + SY+ Sbjct: 85 ALGNVVSFTSRASSWATDEQ----------QQPPLDYCEKLNNVLPPTIRIVGWSYVNAD 134 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHF 175 + R + + L+ E MR A +L G H+F F ++ R + H Sbjct: 135 FDARFSCTGRTYRYYFCNRGLNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNNYERHVRHA 194 Query: 176 DVNSFGNLI----EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 D+ L + A SFL+ QIR + L LVG +++ L DRK Sbjct: 195 DIVGSDMLPDLVSYFEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGDRKPVY 254 Query: 232 PLAPPEGLYFDSVEY 246 PLA L + Sbjct: 255 PLADATPLVLWECHF 269 >gi|308235466|ref|ZP_07666203.1| tRNA pseudouridine synthase A [Gardnerella vaginalis ATCC 14018] Length = 173 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 16/162 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------IVVVHGAGRTDSG 54 +R + + Y+G ++GW RQ N ++QG++E A++ V + + AGRTD+G Sbjct: 1 MRLRLDLAYDGGDFYGWARQPNLRTVQGTLEDALYKVLRVHDGDSCFPLRLTVAGRTDTG 60 Query: 55 VHALRQVAHFDLVREWVPVI-------LCKALNAYLKI--SDTISILNLSIVDKQFHARF 105 VHA QV H D+ + + KAL L+ ISI ++SI F ARF Sbjct: 61 VHASYQVCHLDVEDDILQNCVGHTNLTPVKALEYRLRGVLPKDISIHSVSIAPSGFDARF 120 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 SA+ R+Y+YRI L+ + + ++ Q Sbjct: 121 SALDRTYVYRISDAANRENLDPRMRGFVLQIDYDLDVNSMNQ 162 >gi|146093784|ref|XP_001467003.1| pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 499 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 99/262 (37%), Gaps = 34/262 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 --------ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 R D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDTFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y R L + AA L + + S+ Sbjct: 178 HRTYRYYFFHRGLNLEAMQ---------------EAAAFFLGTHNFRNFCKMDVVNVSNF 222 Query: 169 IRTIDHFDVNSFGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +RT+ ++ L E+ A SFL+ QIR + L LVG G + ++ L+ Sbjct: 223 VRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLER 282 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 283 GDRKPTYPLADGTPLVLWDCGF 304 >gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta] Length = 444 Score = 91.9 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 86/255 (33%), Gaps = 14/255 (5%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q+ N ++I+ + A+ + E H GRTD GV + Sbjct: 94 ILLKFYYLGWDYHGFTVQEDNCNTIEHHLFAALLKSCCIESRESANYHRCGRTDKGVSSF 153 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISD-----TISILNLSIVDKQFHARFSAIRRSYL 113 QV D+ + P N +I ++ + + Sbjct: 154 SQVISLDIRSKLAPEDQGNLSNELPYCKMLNRLLPTNIRCVAWCPVASNFSARFDCKYRR 213 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y+ + L ++ D + I + F+ A Sbjct: 214 YKYFFPRGNLDIDAMNKAAKYVVGDHDFRNICKMDVAN--GIINFKRTVIDAKVSFVNEQ 271 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECG 231 + ++ ++ E+ + +++FL QIR +G L LVG K + K L + +K Sbjct: 272 SMEKSTGYDMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEVILKLLDTETCPQKPQY 331 Query: 232 PLAPPEGLYFDSVEY 246 +A L +Y Sbjct: 332 NMAHQVPLNLWHCDY 346 >gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 257 Score = 91.9 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 88/264 (33%), Gaps = 40/264 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--VTGEIVVVH------GA 48 + + + Y G Y G+ Q +++ ++ A+ + V Sbjct: 11 RKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKVADYARC 70 Query: 49 GRTDSGVHALRQVAHFDLVRE-----WVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GRTD GV L Q+ + LN L + + L + VD + +A Sbjct: 71 GRTDRGVSGLGQIVTLRARSNGAEGVDEELDYVALLNRAL--PNDVRALGWAPVDDELNA 128 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG-RHDFTTFRSIH 162 RF R Y Y LD MR AA+ G R Sbjct: 129 RFDCEWRQYKYFFE---------------KTNGLDLGAMREAARAFEGVHDFRNFCRMDA 173 Query: 163 CQASSPIRTIDHF--DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 S R + + + G L+ I V +FL Q+R L +VG G + T + + Sbjct: 174 ENVKSFTRNVLECTIEESHDGKLMYINVRGTAFLWHQVRCMASVLFMVGLGHESPTVVTE 233 Query: 221 A--LQAQDRKECGPLAPPEGLYFD 242 L+ RK P+AP L Sbjct: 234 LLDLERTPRKPQYPMAPEHALLLW 257 >gi|223040118|ref|ZP_03610398.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] gi|222878595|gb|EEF13696.1| tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) [Campylobacter rectus RM3267] Length = 483 Score = 91.9 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 90/237 (37%), Gaps = 9/237 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGAALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + K+L D FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFRDFTRLKSLINRHAHPAVHVKFISRARDC-FHPRYDATARAYRYVINHGEF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L D VG HDF+ F + SP+R + + G Sbjct: 119 SPFLAP--YETFLPRFDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYARG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGD----GKWTSTDLEKALQAQDRKECGPLA 234 I A FL Q+R V S+ + GK+ TD+ + + + K A Sbjct: 177 ERSIIVFKANGFLRAQVRLMVASVFKALELAKNGKFKETDVRE-FKFKSAKAANLSA 232 >gi|322501100|emb|CBZ36178.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 499 Score = 91.9 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 99/262 (37%), Gaps = 34/262 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 --------ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 R D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y R L + AA L + + S+ Sbjct: 178 HRTYRYYFFHRGLNLEAMQ---------------EAAAFFLGTHNFRNFCKMDVVNVSNF 222 Query: 169 IRTIDHFDVNSFGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +RT+ ++ L E+ A SFL+ QIR + L LVG G + ++ L+ Sbjct: 223 VRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLER 282 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 283 GDRKPTYPLADGTPLVLWDCGF 304 >gi|157872401|ref|XP_001684749.1| pseudouridine synthase A-like protein [Leishmania major strain Friedlin] gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 498 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 34/262 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 --------ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 R D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNAFSLTARASCTGDAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y R LA + AA L + + S+ Sbjct: 178 HRTYRYYFFHRGLNLAAMQ---------------EAAAFFLGTHNFRNFCKMDVVNVSNF 222 Query: 169 IRTIDHFDVNSFGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +RT+ ++ L E+ A SFL+ QIR + L LVG G + ++ L+ Sbjct: 223 VRTVFSVGLHPSEALPELISYLEIRANSFLYHQIRCIMEVLFLVGRGLEVPSVVQTLLEL 282 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 DRK PLA L + Sbjct: 283 GDRKPTYPLADGTPLILWDCGF 304 >gi|255022149|ref|ZP_05294152.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] gi|254968413|gb|EET25972.1| tRNA pseudouridine synthase A [Acidithiobacillus caldus ATCC 51756] Length = 206 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 2/186 (1%) Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + HFD + + +N YL +IS+L V + FHARF+A+ R Y Y I+ R Sbjct: 1 MVHFDAPVTRPALAWTRGVNRYL--PSSISVLWARPVPRDFHARFAAVGRRYRYCILNRS 58 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 AL GRA +P+ L E M+ AA L+GRHDF+ FR+ CQA PIR + V+ Sbjct: 59 ERSALYAGRAAWVPRPLAVEPMQEAASLLLGRHDFSAFRAAACQAKHPIRELRQLRVSRQ 118 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + + A +FLH +R+ VG L +G G + L ++ R G AP EGLY Sbjct: 119 GDWVFVDAEANAFLHHMVRNLVGVLLGIGWGDRPPHWAAEVLASRKRALAGVTAPAEGLY 178 Query: 241 FDSVEY 246 F + Y Sbjct: 179 FVAALY 184 >gi|150400596|ref|YP_001324362.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] gi|150013299|gb|ABR55750.1| tRNA pseudouridine synthase A [Methanococcus aeolicus Nankai-3] Length = 310 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 31/247 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSS-IQGSIEKAIFL---VTGEIVV-VHGAGRTDSGVHAL 58 Y + I Y+G+ G+Q + + + I A+ + E + GRTD+GV AL Sbjct: 39 YILKIAYDGNN-DGFQSHPHKKNNVCDIIINALLKCGYMDKEETKPLLRGGRTDNGVLAL 97 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 +L +E + + A LK + + I + R Y Y + Sbjct: 98 GNFIIVNLNQEPILSHVY----AKLKYTGVWVLGYSKISEL-----PEIKYRHYKYILPN 148 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + L + A + + + + + +P+RTI + Sbjct: 149 EGQNINLM---------------IEGANKLIGTHSFHNLSKRDNTKNKNPLRTIYDIKIK 193 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I I + ++FL +R V +L VG ++K L + E AP G Sbjct: 194 ENDFFITIDIFGKNFLWNMVRRIVTALSEVGKENKPLNWIDKLLDI-NHTEGVAPAPANG 252 Query: 239 LYFDSVE 245 L V+ Sbjct: 253 LILVDVK 259 >gi|58699741|ref|ZP_00374392.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] gi|58533741|gb|EAL58089.1| tRNA pseudouridine synthase A [Wolbachia endosymbiont of Drosophila ananassae] Length = 156 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 90/152 (59%) Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 +VD FHARFSA +R Y YRI+ R AP ALE G W + LD MR AA+HL+G+HD Sbjct: 5 EVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFSPLDVNIMREAAKHLLGKHD 64 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 ++FRS C A++PIRTID D+ GN I I++ A SFLH Q+R G+L G + Sbjct: 65 LSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTN 124 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ L R G APP GLY ++Y Sbjct: 125 PQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY 156 >gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Pichia pastoris CBS 7435] Length = 422 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 78/259 (30%), Gaps = 21/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G Q+ + +I+ I +A+ + GRTD G Sbjct: 50 IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTDKG 109 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ P L N ++ + L D + H Sbjct: 110 VSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIH-----GVCLRPP 164 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + + + LD E+M+ AA G HDF F + T Sbjct: 165 KGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAV 224 Query: 175 FDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + +FL Q+R V L ++G G + + K L Q + Sbjct: 225 RSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLLDIQSHPQ 284 Query: 230 CGPLAPPE--GLYFDSVEY 246 L Y Sbjct: 285 KPVYVMAHDIPLVLYDCIY 303 >gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei] gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei] Length = 438 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-------GEIVVVH--GAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ + A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQRDKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ A + D I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDDKYQTDGAGVLNNLLPDDIRVFGMRRTINFFHPQKQCDYRTYS 153 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTI 172 Y + E + + G H+F + + R I Sbjct: 154 YTCPSFVFAKPTELTNSAFRLPKETLAEVNDILSIYKGTHNFFNYTAKRAYNDMSSNRYI 213 Query: 173 DHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ ++I V +SF+ QIR VG + V + ++++ Sbjct: 214 VSFECKEPFLFRDEFRKEDVEFVQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRS 273 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + Q + P+AP GL + Y Sbjct: 274 FEGQ--RMDIPMAPGLGLLLERTHY 296 >gi|303284649|ref|XP_003061615.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456945|gb|EEH54245.1| predicted protein [Micromonas pusilla CCMP1545] Length = 390 Score = 91.5 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 15/130 (11%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVH---GAGRTDSGVHALR 59 RY + I+Y+G + G+QRQ N ++QG +E+A+ TG VH G+ RTD+GVHAL Sbjct: 7 RYLLRIQYDGGAFHGFQRQANARTVQGCVEEAMAKFTGVEGGVHAITGSSRTDAGVHALD 66 Query: 60 QVAHF----------DLVREWVPVILCKALNAYLKI--SDTISILNLSIVDKQFHARFSA 107 AH + KA+N YL+ + + FHAR+ A Sbjct: 67 ATAHVDIDDGDAGDAPPPPPHSARTVMKAVNHYLRKTAPMASIASCARVCPETFHARYCA 126 Query: 108 IRRSYLYRII 117 R+Y Y I Sbjct: 127 TARTYRYLIY 136 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKECGPLAPPEGLYF 241 I I A SFL+ Q+R VG+L+ VG G+ + D+ L+ D P+AP GLY Sbjct: 285 HIVITARAPSFLYHQVRLMVGTLRAVGAGELSPDDVTDLLEGTTDASRAPPMAPAHGLYL 344 Query: 242 DSVEY 246 + V Y Sbjct: 345 ERVHY 349 >gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC 50983] Length = 427 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 62/279 (22%), Positives = 94/279 (33%), Gaps = 44/279 (15%) Query: 5 CMIIEYNGSGYFGWQRQKNGS------SIQGSIEKAIF---------LVTGEIVVVHGAG 49 + + Y+G G G Q Q N +I+G +KA+ L + + A Sbjct: 76 LVALGYSGEGLKGMQIQTNEKGEEIHSTIEGIFQKALLATNLSTEEILADKKKLKFSRAA 135 Query: 50 RTDSGVHALRQVAHFDLV------------------REWVPVILCKALNAYLKISDTISI 91 RTD GVHA + L + KALN +L+ + + Sbjct: 136 RTDKGVHAALNILALALPVTLDKTLPQGEGDATRNVWTFDEKKNVKALNDFLE-PLNMQV 194 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + V +F AR RR Y Y + + + + +N Sbjct: 195 FGIQRVSNKFDARKQCERRRYEYLLPEFALDGKADAAKLEEVMSQYVGKNKNFF------ 248 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 I I I++V +SFL QIR +G V G Sbjct: 249 NFTAKIPAEDPSAKRHIISITCQPTEIDANTFIRIQLVGQSFLLHQIRKMIGLAVEVCRG 308 Query: 212 KWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 +E+ L A++RK LAP EGL+ D V Y+ Sbjct: 309 SAPEGAIEECLAAKERKH-IHLAPAEGLFLDRVYFDCYN 346 >gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii] gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii] Length = 431 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 84/267 (31%), Gaps = 39/267 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 + Y G Y G QK+ +++G I A+ + GRTD G Sbjct: 82 IALKFSYLGWNYNGLAVQKDVTPLPTVEGVIIDALMKCRLVASSNVQDFRFSRCGRTDKG 141 Query: 55 VHALRQVAHF------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 V A+ QV D + + + LN L IS + L + F Sbjct: 142 VSAMNQVISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAMCLRP-PEGFD 200 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 AR+S R Y Y + L + A L D N F Sbjct: 201 ARYSCEYRHYKYLFSGKGLMLDRMQKAAALYHGEHDFRN-------------FCKLDGSK 247 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + N+ +V +FL Q+R + L LVG G + + L Sbjct: 248 QITNYTRNILGSEIQHISDNMYCFDLVGSAFLWHQVRCMMAILFLVGQGLEEPSVITNLL 307 Query: 223 QAQDRKECGP---LAPPEGLYFDSVEY 246 D+ P +A L ++ Sbjct: 308 DV-DKTPQKPIYEMASDLPLILYDCKF 333 >gi|195436012|ref|XP_002065972.1| GK25867, isoform A [Drosophila willistoni] gi|194162057|gb|EDW76958.1| GK25867, isoform A [Drosophila willistoni] Length = 508 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 95/285 (33%), Gaps = 53/285 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQR------QK--NGSSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ Q + +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLDQPRLDTNSVQGCLELALRVFRPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTIHVDLERYDGQPYALTTLTGVLNRTLGKQRLPIRVLSTELVPDTFHCRYH 120 Query: 107 AIRRSYLYR------------------IITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 AI R+YLYR L++ A Sbjct: 121 AIGRTYLYRFAVARNSPVDDGKLKNRGYEAFIPVEELDRCYFLQAASFDIERVRSAARLF 180 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDV---------------------NSFGNLIEIR 187 L T + S + N + EI Sbjct: 181 LGIHDFRTFMSVSRQKGPSRDHPMFTVRKIDEINIRPGHSLALNAHAKLANETYDHWEIE 240 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + A+SFL+ Q+R VG+L +G GK + + L + P Sbjct: 241 IKAKSFLYKQVRRIVGTLLALGTGKIDEKCIYQMLTIPSKNSWEP 285 >gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi] Length = 376 Score = 91.5 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 93/265 (35%), Gaps = 28/265 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E + GRTD GV A Sbjct: 75 ILLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKVCLIESRETSNYNRCGRTDKGVSAF 134 Query: 59 RQVAHFDLVREWVPVI-------------LCKALNAYLKISDTISILNLSIVDKQFHARF 105 QV D+ + P C LN L + + ARF Sbjct: 135 HQVISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPMVNP-GYSARF 193 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + + + + D N+ G RSI Sbjct: 194 DCRSRTYRYFFPRGNLRIDAMQEACRHLVGAHDFRNLCKMDV---GNGVVNFVRSIDECT 250 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 +T +++ +++ ++FL Q+R + L LVGDGK T +++ L Sbjct: 251 IHASQTDSSG--MGSYDMMYLQLRGKAFLWHQVRCIMAVLLLVGDGKEDPTIVKELLDV- 307 Query: 226 DRKECGP---LAPPEGLYFDSVEYS 247 DR C P +A L +++ Sbjct: 308 DRNPCKPQYSMASDVPLNLYDCQFN 332 >gi|303245000|ref|ZP_07331323.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] gi|302484652|gb|EFL47593.1| tRNA pseudouridine synthase A [Methanothermococcus okinawensis IH1] Length = 263 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 91/251 (36%), Gaps = 32/251 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHALRQ 60 Y + + YN ++G+Q Q + ++ I A+ + + + + GRTD GV A+ Sbjct: 2 YILKVAYN-KHHYGFQTQPHKETVCDKIMDALKECNYLANDKI-IFCGGRTDKGVSAIGN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +L +E + + L + + I + Sbjct: 60 FIVVELSQEPILSHIYSKL---------------------KNKGIWIFGYKKIDTIPEVK 98 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 + + M A++ L+G H F + + SPIRTI + Sbjct: 99 YRHYRYILPIIPHIDEYNIDLMIEASKKLIGEHSFHNLSKKDRTKEKSPIRTIYDIKIEK 158 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I V+ +SFL +R + +L VG +++ L ++ K P AP EGL Sbjct: 159 NLYYITIDVIGKSFLWNMVRKIITALSEVGKENKPVGWIDELL-CENHKGGVPPAPAEGL 217 Query: 240 YFD----SVEY 246 +EY Sbjct: 218 ILMEAKTDIEY 228 >gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Pichia pastoris GS115] Length = 438 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 78/259 (30%), Gaps = 21/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G Q+ + +I+ I +A+ + GRTD G Sbjct: 66 IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTDKG 125 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ P L N ++ + L D + H Sbjct: 126 VSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILNQLLPSDIRIH-----GVCLRPP 180 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + + + LD E+M+ AA G HDF F + T Sbjct: 181 KGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTNYTRAV 240 Query: 175 FDVNS-----FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + +FL Q+R V L ++G G + + K L Q + Sbjct: 241 RSSQILPLEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSKLLDIQSHPQ 300 Query: 230 CGPLAPPE--GLYFDSVEY 246 L Y Sbjct: 301 KPVYVMAHDIPLVLYDCIY 319 >gi|311264306|ref|XP_003130101.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa] Length = 479 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + +N L I L+ + Sbjct: 124 GQVISLDLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDIRVLAWAPVEPSF 183 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR A L + + + + + Sbjct: 184 SARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSA 243 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++++ L + VV ++FL+ Q+R + L L+G G +++ L Sbjct: 244 QVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLN 303 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 304 IEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 287 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 87/276 (31%), Gaps = 31/276 (11%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL--VTGE-------IVVVHGAGR 50 RY + + Y G + G+ RQ N ++I+G + A+ + E + GR Sbjct: 10 TRYVALELMYVGWAFQGFARQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAYSRCGR 69 Query: 51 TDSGVHALRQVAHFDLVRE---------WVPVILCKALNAYLKISDTISILNLSIVDKQF 101 TD GV AL QV L + +C L+ Sbjct: 70 TDRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYPRLINK 129 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 + A G SLD + MR AA H +G HDF F Sbjct: 130 ALPPEVRILGWTPVPADFNARCGGRAGEWVYQQHSLDIQAMRTAAAHFIGEHDFRNFCKP 189 Query: 162 HCQASSPIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 R + + V +FL Q+R L +VG G+ Sbjct: 190 DVATVRSFRRRILSFTVEPVTTSAADAAHQVYALTVRGTAFLWHQVRCMAAILLMVGRGQ 249 Query: 213 WTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + + L +A RK +AP E L + + Sbjct: 250 EAPDVVARLLDVEACPRKPQYSMAPEEPLLLYACGF 285 >gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae] gi|187040672|emb|CAP20635.1| CBR-PUS-1 protein [Caenorhabditis briggsae AF16] Length = 437 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 91/265 (34%), Gaps = 23/265 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE---------IVVVHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMEKAGWITAAQREKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ + + + I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDEKYKVDGPGILNNLLPNDIRVFGMKRTINFFHPQKQCDYRTYS 153 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS-PIRTI 172 Y T E A + G H+F + + R I Sbjct: 154 YTCPTFVFAKPTELTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAKRAYDDMSSNRYI 213 Query: 173 DHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ I+I V +SF+ QIR VG + V + ++++ Sbjct: 214 VSFECKEPFLFRDEFRKEDVEFIQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRS 273 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + Q + P+AP GL + Y Sbjct: 274 FEGQ--RMDIPMAPGLGLLLERTHY 296 >gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus] Length = 322 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 30/248 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 72 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 131 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ LN L I +L + V+ Sbjct: 132 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVL--PADIRVLAWAPVEP 189 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y +A A + D N ++ + V T Sbjct: 190 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 249 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + + + ++FL+ Q+R + L L+G G + Sbjct: 250 CAQVQLVAQSPGEERRQEPFQLCQFEV---IGQAFLYHQVRCMMAILFLIGQGMEKPEII 306 Query: 219 EKALQAQD 226 ++ L Q Sbjct: 307 DELLNIQK 314 >gi|226533212|ref|NP_001145731.1| hypothetical protein LOC100279238 [Zea mays] gi|219884209|gb|ACL52479.1| unknown [Zea mays] Length = 486 Score = 91.1 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 83/257 (32%), Gaps = 30/257 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + GRTD GV A Sbjct: 151 VALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSA 210 Query: 58 LRQVAHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV D++ E + K LN L I +L V FHARF+ Sbjct: 211 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 268 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R Y Y + + A D N Sbjct: 269 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRN-------FCKMDAANVSNYRRHITE 321 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--A 224 ++ L + + +FL Q+R V L L+G G + + ++ L Sbjct: 322 FT--ISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMK 379 Query: 225 QDRKECGPLAPPEGLYF 241 RK +AP L Sbjct: 380 TSRKPQYKMAPELPLIL 396 >gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica] Length = 443 Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 90/265 (33%), Gaps = 27/265 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + ++I Y G Y G Q +I+ + +A+ + Sbjct: 81 KKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSCS 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ VA LC+ +NA+L D I + + V K F A+ Sbjct: 141 RTDKGVSAIGNVASLKCKIP---KNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTH 195 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD-----CENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y T + R S + E ++ + + R Sbjct: 196 RTYSYYCPTICFGSKEDWDRPSSFRISTEKLEGVRELLKKYIGTRSYHNFTSGKRQGDES 255 Query: 165 ASSP---IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 A R + + +E+RVV +SF+ QIR VG + E+A Sbjct: 256 AKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDDHWERA 315 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 Q E P AP GL V Y Sbjct: 316 FQRPF--EDVPKAPGNGLVLRQVHY 338 >gi|297666734|ref|XP_002811665.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Pongo abelii] Length = 287 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 27/243 (11%) Query: 30 SIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYL 83 +++A + E V + RTD+GVHAL AH D+ + P +L + LN +L Sbjct: 27 VLQEAAERLNSVEPVRFTISSRTDAGVHALSNAAHLDVQRRSGRPPFPPEVLAEVLNRHL 86 Query: 84 KISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-----SLD 138 + +L V FHAR +A R YLYR+ T + LD Sbjct: 87 RHPAI-RVLRAFRVPSDFHARHAATSRIYLYRLATGCHRRDELPVFERNLCWALPADCLD 145 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-------------FDVNSFGNLIE 185 ++ AAQHL+G HDF+ F+S SP+RT+ + + Sbjct: 146 VVAVQEAAQHLLGTHDFSAFQSTGSPVPSPVRTMRRVSVSPGQASPLVTPEESRKLRFWN 205 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDS 243 + ++SFL+ Q+R L VG G ++ L++QD K +AP GL+ S Sbjct: 206 LEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKS 265 Query: 244 VEY 246 V Y Sbjct: 266 VLY 268 >gi|73994983|ref|XP_852307.1| PREDICTED: similar to tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Canis familiaris] Length = 409 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 61 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQ-SGCIPENHGEDMRKMSFQRC 119 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 120 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCD 174 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + + G H+F F S + Sbjct: 175 ARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNGLLACYKGTHNFHNFTSQKGPQEA 234 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG L + G + LE++ Sbjct: 235 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLERS 294 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 D K P AP GL + V Y+ Sbjct: 295 W--GDAKVDVPKAPGLGLVLERVHFEKYN 321 >gi|194706182|gb|ACF87175.1| unknown [Zea mays] gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays] Length = 457 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 83/257 (32%), Gaps = 30/257 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + + Y G ++G+ + N +++ I KA+ + GRTD GV A Sbjct: 122 VALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSA 181 Query: 58 LRQVAHF-----------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV D++ E + K LN L I +L V FHARF+ Sbjct: 182 TGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRIL--PRDIRVLGWCPVPADFHARFT 239 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R Y Y + + A D N Sbjct: 240 CLSREYKYLFWKGDLDILEMQKAASKFIGEHDFRN-------FCKMDAANVSNYRRHITE 292 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--A 224 ++ L + + +FL Q+R V L L+G G + + ++ L Sbjct: 293 FT--ISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMK 350 Query: 225 QDRKECGPLAPPEGLYF 241 RK +AP L Sbjct: 351 TSRKPQYKMAPELPLIL 367 >gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus] Length = 316 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 30/248 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ LN L I +L + V+ Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVL--PADIRVLAWAPVEP 183 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y +A A + D N ++ + V T Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + + + ++FL+ Q+R + L L+G G + Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEV---IGQAFLYHQVRCMMAILFLIGQGMEKPEII 300 Query: 219 EKALQAQD 226 ++ L Q Sbjct: 301 DELLNIQK 308 >gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 429 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 88/255 (34%), Gaps = 20/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 40 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 99 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V + P ++ ++++ + +Y+ Sbjct: 100 ALGNVFSLTVRASSWPT----------DSPQKPALDYCAMLNSALPVTIRIVGWAYVDDT 149 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF- 175 + R + + L+ E M AA L G H+F F S Sbjct: 150 FDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVRSV 209 Query: 176 ----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 210 GIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKPVY 269 Query: 232 PLAPPEGLYFDSVEY 246 PLA L + Sbjct: 270 PLADGTPLVLWDCHF 284 >gi|30692743|ref|NP_198390.2| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|27311599|gb|AAO00765.1| putative protein [Arabidopsis thaliana] gi|30725698|gb|AAP37871.1| At5g35400 [Arabidopsis thaliana] gi|332006580|gb|AED93963.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 420 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 88/318 (27%), Gaps = 72/318 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVH-----ALRQVAHFDLVREWVPVILCKAL-------------NAYLKISDTIS 90 GRTD GV D+ + + K ++ Sbjct: 153 GRTDKGVSALNQVCSFYTWRKDIEPIAIEDAINKDASGKLRVVSISKVSRSFHPNFSAKW 212 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE------------------------ 126 L I ++ I Sbjct: 213 RRYLYIFPLDDAEPLRKSGENHENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIEET 272 Query: 127 -------KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----- 174 + + +D + + L + ++ + + H Sbjct: 273 SNALEVVEKPSDFSVSKVDQLLQHLQGKVLSYKMFARDTKAARNEGPPTECFMYHARAAE 332 Query: 175 -----FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 D ++ + +VA FL +R V + L K L+A R+ Sbjct: 333 IRLSSSDCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRA 392 Query: 230 CGPLAPPEGLYFDSVEYS 247 P AP EGL V Y+ Sbjct: 393 TAPPAPSEGLCLFDVGYT 410 >gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299] gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299] Length = 290 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 79/266 (29%), Gaps = 24/266 (9%) Query: 4 YCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTD 52 + + Y G Y G+ Q +++ ++ +A+ V T + GRTD Sbjct: 15 VALHVMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPDATWKTCDYTRCGRTD 74 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAY-----LKISDTISILNLSIVDKQFHARFSA 107 +GV AL QV L + L D I + R Sbjct: 75 AGVSALGQVVSARLRCRVPRRDDDDDDDDLSETGRLHEGDEIDYPAVLNRALPRDIRILG 134 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R + LD M AA VG HDF F + + Sbjct: 135 WTYVPP-AFSARFDCDYRHYKYFFTDWNGLDVRAMNEAASAFVGEHDFRNFCKMDARNVH 193 Query: 168 PIRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R + I VV +FL Q+R L LVG G+ + L Sbjct: 194 NYRRRIDSCRVVLAAGEPPGVAHIEVVGTAFLWHQVRCIASVLFLVGLGREPPGVVAHML 253 Query: 223 Q--AQDRKECGPLAPPEGLYFDSVEY 246 RK +AP E L + Sbjct: 254 DLARCPRKPQYEMAPEEPLLLWRCGF 279 >gi|4220415|gb|AAD12460.1| Homology to pseudouridine synthetase X02743 [Mycoplasma genitalium] Length = 102 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M RY I+ Y+G + GW Q N ++IQG +E++ L+ G + V G+GRTD GVHA+ Q Sbjct: 1 MARYLGIVSYDGIYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTI 89 H D+ E +L + +N +K + Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIV 89 >gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis] Length = 412 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 86/273 (31%), Gaps = 36/273 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 75 VALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVSAF 134 Query: 59 RQVAHFDLVREWVP-----------------------VILCKALNAYLKISDTISILNLS 95 QV + + K LN L I I N + Sbjct: 135 SQVITIESRSTQFCGGLGVKLPENVDADKKSQTAVSELPYVKMLNRVL--PHDIRIWNWA 192 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + F ARF R+Y Y + L A + D N+ + Sbjct: 193 PAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKMDVG----NGV 248 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 F +S +H ++ V +FL+ Q+R + L L+G Sbjct: 249 LQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIGQKLEAP 308 Query: 216 TDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + + L + RK +A L + Sbjct: 309 EIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHF 341 >gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus] Length = 402 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 59 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 174 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 233 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 234 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 293 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 294 --GEEKVDVPKAPGLGLVLERVHFEKYN 319 >gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus] Length = 393 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 165 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 224 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 225 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 284 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 285 --GEEKVDVPKAPGLGLVLERVHFEKYN 310 >gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus] Length = 402 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 59 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 118 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 119 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 173 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 174 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPREPS 233 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 234 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 293 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 294 --GEEKVDVPKAPGLGLVLERVHFEKYN 319 >gi|296471772|gb|DAA13887.1| tRNA pseudouridine synthase 3 [Bos taurus] Length = 481 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 92/265 (34%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 65 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV DL + N I I+++ + + + Sbjct: 125 GQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHF 175 + + R + +LD M AAQ VG HDF + + RTI Sbjct: 185 SARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 176 D------------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|17565126|ref|NP_507242.1| PseudoUridine Synthase family member (pus-1) [Caenorhabditis elegans] gi|3880517|emb|CAA16518.1| C. elegans protein W06H3.2a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 415 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV---------VHGAGRTDS 53 +Y M++ Y G Y+G Q QK+ +I+ + +A+ A RTD Sbjct: 34 KYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDR 93 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 V A RQ+ L R+ A + I + + FH + R+Y Sbjct: 94 AVSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIRVFGMRRTTNFFHPQKQCDHRTYS 153 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIA-AQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + E + + + +L + F S R I Sbjct: 154 YTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSSNRYI 213 Query: 173 DHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 F+ ++I + +SF+ QIR VG + V + ++++ Sbjct: 214 ISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRS 273 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + Q + P+AP GL + Y Sbjct: 274 FEGQ--RMDIPMAPGLGLLLERTHY 296 >gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi] gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi] Length = 395 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 92/258 (35%), Gaps = 20/258 (7%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ +I A RTD GV Sbjct: 61 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHNWITEDSFKQVQIASFQRAARTDKGV 120 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR----- 110 A RQV L E V K L +++ + +Q +AR Sbjct: 121 SAARQVCSIKLPDELDLVAFNKDLPETIRLFGVERVTKGFNAKEQCNARTYTYTLPSIAF 180 Query: 111 --SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 + QA L I ++L + + +F + S Sbjct: 181 AGCNEQQNQQDQATFRLTPALHEQICETLKLYEGTKNFHNFTSKKNFLDPSAKRFIMSFT 240 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 H + ++V +SF+ QIR VG + G T LE+AL + + Sbjct: 241 SSAPFHS--PQGIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTRITLERALT--EER 296 Query: 229 ECGPLAPPEGLYFDSVEY 246 P+AP GL D+V Y Sbjct: 297 LDLPMAPGLGLVLDTVHY 314 >gi|302818082|ref|XP_002990715.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii] gi|300141453|gb|EFJ08164.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii] Length = 318 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 M + + + Y G+GY G QR +I+G +E+A+ + + A RTD Sbjct: 1 MEKAALFVVYCGAGYKGMQRNPGALTIEGVLEEALGRAGAIGSNGCSRNWLDWKRAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V AL QV L ++ L N +L +I +L V F A+ R Y Sbjct: 61 KEVSALGQVVSARL---YLTPDLVHRTNEFL--PGSIQLLGFKRVPDDFSAKKMCDSRRY 115 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + + N + + RT+ Sbjct: 116 EYVLPVFAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVRPGDREARRTV 175 Query: 173 DHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + I V+ARSF+ QIR VG V T + +AL++ + Sbjct: 176 VEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALRS-EV 234 Query: 228 KECGPLAPPEGLYFDSVEY 246 P AP GL D Y Sbjct: 235 DVIVPTAPEVGLLLDESFY 253 >gi|307595363|ref|YP_003901680.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] gi|307550564|gb|ADN50629.1| tRNA-pseudouridine synthase I [Vulcanisaeta distributa DSM 14429] Length = 272 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS + G+ + +SI+ + +AI + A RTD GV A+ Sbjct: 1 MPTVAFKVFYDGSLFSGFTG--STNSIEYYLRRAIRYFIK-DFKLSKASRTDPGVSAIGN 57 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + + V LN+ L + I + VD+ F AR + R Sbjct: 58 VVSINYIDSIRLVPGM--LNSRL--PNGIRAWAWAEVDEGFRARAAVSR----------- 102 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D + MR AA+ VG HD + F+ + + + Sbjct: 103 ------TYVYVMPWLYEDIDLMRSAAKLFVGVHDLSNFQVKEKGVPTTVMINNVNIERFG 156 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L V+ R F + IR V +L++VG G T +L ++ + RK P APP GL Sbjct: 157 DYL-VFIVIGRGFRNKMIRKIVNALRMVGSGILTIDELRDLIELRIRKP-IPPAPPYGLL 214 Query: 241 FDSVEY 246 +V Y Sbjct: 215 LLNVNY 220 >gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis] Length = 531 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 20/260 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAI--FLVT-------GEIVVVHGAG 49 + M+ Y G+ Y G Q + +I+G + +A+ V + A Sbjct: 69 RKVAMLFAYCGANYHGLQMNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPHKMTYKSAS 128 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV QVA L V +N +L + + + + Sbjct: 129 RTDKGVSTCGQVASLKLRLNENVVG---LINQHLPEDIVVMAVRRTTQGFNAQLKAEGRT 185 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 SY K L +++ + H+FT+ + + ++ Sbjct: 186 YSYTLPTFAFADYGTGNTSYKITEDKLLKVKSILYRYKGTHSFHNFTSGKRMGEMSAQRF 245 Query: 170 RTIDHF---DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + I + + +SF+ QIR +G L + +G +A Sbjct: 246 IIEFEHGDPFLVQNVEFITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIRAFSEP- 304 Query: 227 RKECGPLAPPEGLYFDSVEY 246 E P AP GL + V Y Sbjct: 305 -LEDIPKAPGTGLVLEKVHY 323 >gi|77735971|ref|NP_001029684.1| tRNA pseudouridine synthase 3 [Bos taurus] gi|119391067|sp|Q3SX07|PUS3_BOVIN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus] Length = 481 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 92/265 (34%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + H GRTD GV A Sbjct: 65 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVENRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN-AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV DL + N I I+++ + + + Sbjct: 125 GQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRVLAWAPVETSF 184 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS--SPIRTIDHF 175 + + R + +LD M AAQ VG HDF + + RTI Sbjct: 185 SARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 176 D------------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana) tropicalis] Length = 399 Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG----------EIVVVHGA 48 + +++ Y+G GY G QR +I+ + +A+ +++G + + Sbjct: 55 RKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDELVQAL-VLSGCIPDNHAEDMKKMSFQRC 113 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N L I IL L V +F+++ S Sbjct: 114 ARTDKGVSAAGQVVSLKI---WLIDNVVEKINENL--PSHIRILGLKRVTGRFNSKNSCD 168 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM-------RIAAQHLVGRHDFTTFRSI 161 R+Y Y + T ++ + S + N ++ R Sbjct: 169 ARTYSYTLPTFAFSHKDKEAQDENFRLSQETLNRVNELLALYKGTRNFHNFTSQKGPRDP 228 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + + L I+V +SF+ QIR +G + V G ++ +E++ Sbjct: 229 SAKRYIMEMHCEPPFQQGGLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIERS 288 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 289 W--GEEKVDIPKAPGLGLVLERVHFEKYN 315 >gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila] gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena thermophila SB210] Length = 481 Score = 89.9 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 88/251 (35%), Gaps = 19/251 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 Y + + Y G Y G Q+ ++++ + KA+ T + +GRTD GV AL Sbjct: 114 YALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKTTLIKNRDNCNFTRSGRTDKGVSAL 173 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV L + D I IL S VD F+ARF +R Y Y Sbjct: 174 GQVIGITLRTSIKIGENIDEI-------DDIRILGCSKVDPAFNARFDCQKRIYKYYFFE 226 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 Q + K A L D N + I Q + ++ Sbjct: 227 NQMDIQRMKEAANLFLGEHDFRNFCKIDV-----LQTLNYVRIIYQLDIEEVQANFGTLD 281 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPP 236 L + +FL QIR+ + L LVG + + + + L Q K +AP Sbjct: 282 PRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVTELLDIQKNPSKPNYEMAPD 341 Query: 237 EGLYFDSVEYS 247 L Y+ Sbjct: 342 YPLVLFDCLYN 352 >gi|156405521|ref|XP_001640780.1| predicted protein [Nematostella vectensis] gi|156227916|gb|EDO48717.1| predicted protein [Nematostella vectensis] Length = 300 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 77/255 (30%), Gaps = 26/255 (10%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDSGV 55 ++I Y G GY G Q +I+ + A+ + RTD GV Sbjct: 5 ALLISYCGVGYAGMQINPGVRTIEEQLINALHQAEVITDDAKECLGKMSFQRCARTDKGV 64 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV + + +N++L I + + SA YL Sbjct: 65 SAARQVVSLKISALSSLLPK---INSFLPPEIRIFGMIKTTKAFDCKQNCSARTYEYLTP 121 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + I K+L + F + S Sbjct: 122 TFAFAKDYVSRTEKIEEINKALSNYKGTKNYHNFTSGKKFEDPSANRYIISFKC---GKP 178 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + V +SF+ QIR +G + V G S+ + P AP Sbjct: 179 FERNGREFVVLTVKGQSFVLHQIRKMIGLVIAVVRGVAPSSTFDLI--------DIPKAP 230 Query: 236 PEGLYFDSVE---YS 247 GL D+V Y+ Sbjct: 231 ALGLVLDTVHFDAYN 245 >gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens] Length = 432 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 89 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 147 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 148 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 204 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 205 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 264 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 265 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 323 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 324 -GTEKVDVPKAPGLGLVLERVHFEKYN 349 >gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus] Length = 393 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 165 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPREPS 224 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 225 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 284 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 285 --GEEKVDVPKAPGLGLVLERVHFEKYN 310 >gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus musculus] gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus] gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus] gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus] Length = 393 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 165 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 224 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 225 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 284 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 285 --GEEKVDVPKAPGLGLVLERVHFEKYN 310 >gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus] Length = 393 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 110 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 164 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 165 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 224 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 225 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 284 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 285 --GEEKVDVPKAPGLGLVLERVHFEKYN 310 >gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti] gi|108879706|gb|EAT43931.1| pseudouridylate synthase [Aedes aegypti] Length = 467 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 90/263 (34%), Gaps = 28/263 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E H GRTD GV A Sbjct: 76 ILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRVCLIENRETSNYHRCGRTDKGVSAF 135 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV D+ ++ P C+ LN L + + ARF Sbjct: 136 HQVVSLDVRSKFAPENQLEPESIANEINYCQLLNRVLPQDIRCVAWMPMVNP-NYSARFD 194 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R+Y Y + K + + D N+ + Sbjct: 195 CRSRTYRYFFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVG------NGVVTFTRRISY 248 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I S +++ + + ++FL Q+R + L LVG+GK + +++ L + Sbjct: 249 VSIEDSQSDAKESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEPSVVKELLDV-N 307 Query: 227 RKECGP---LAPPEGLYFDSVEY 246 + C P LA L EY Sbjct: 308 KNPCKPQYSLASDLPLNLYECEY 330 >gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine synthase 3 [Callithrix jacchus] Length = 477 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 19/262 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALN------------AYLKISDTISILNLSIVDKQFHARFS 106 QV DL ++ + N L I L+ + Sbjct: 124 GQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 183 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 YR +A L + + + + + Q Sbjct: 184 FSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQ 243 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QA 224 ++ D L + V ++FL+ Q+R + L L+G G +++ L + Sbjct: 244 PVGQSPDEERWQVPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK 303 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 +K +A L ++ Sbjct: 304 NPQKPQYSMAVEFPLVLYDCKF 325 >gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1 [Acyrthosiphon pisum] gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2 [Acyrthosiphon pisum] Length = 402 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 57/251 (22%), Positives = 89/251 (35%), Gaps = 15/251 (5%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQ 60 I Y G Y G+ Q + +I+ + +A+ + + H GRTD GV + Q Sbjct: 61 FKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVSSFSQ 120 Query: 61 VAHFDLV---REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 V + + + CK LN L I ++ V F ARF R+Y Y Sbjct: 121 VISLTVRSNGDDSEELPYCKMLNRLL--PKDIRVVAWGPVKDDFSARFDCGSRTYKYWFP 178 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L + + D N+ +R I + F Sbjct: 179 RGDLDVDLMNQAIQQVVGTHDFRNLCKMDV---ANGVVQFYRRITSADIKICSENNQFSK 235 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAP 235 N ++ E+ +V ++FL QIR V L LVG K + L + RK LA Sbjct: 236 NRDYDMCELTIVGKAFLWHQIRCIVSVLILVGCRKENPNIFKDLLNIENCPRKPQYCLAS 295 Query: 236 PEGLYFDSVEY 246 L ++ Sbjct: 296 DLPLNLFDCQF 306 >gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4] Length = 470 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 61/303 (20%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 RY + + + G Y G Q + +I+ +E+A+F G + + A RTD Sbjct: 71 RRYGLWVAFCGKNYCGMQMNEGVKTIEAELERALFEAGGIAESNYGYLQKIGWSRAARTD 130 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA Q+ L ++A L + I ++++ V K F+A+ + +R+Y Sbjct: 131 KGVHAAGQLLTAKLHVGDDIAGFMAKVDAAL--PEDIRVMHMVTVTKNFNAKMTCDQRTY 188 Query: 113 LYRII-----------------------TRQAPLALEKGRAWLIPKSLDCENMRIA---- 145 Y + + + +D + Sbjct: 189 EYLAPTFIFGKRMRSSASKNEEKQAEGTNQWPSNLRDSEEGFDSNVVIDNTTLEAHKAFR 248 Query: 146 ------------------AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + + + V + + +R Sbjct: 249 LSDEILEQLNATLKQYVGTHNFHNFTSKMEPTNPQANRFIISFEAERPFVQNDMEWVRLR 308 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 VV +SFL IR +G+ V G + +E+A++ P AP GLY Sbjct: 309 VVGQSFLLHHIRKMIGTAVEVVSGVSDPSTIERAMELTKMDL--PKAPSVGLYLAQAHFE 366 Query: 246 -YS 247 Y+ Sbjct: 367 VYN 369 >gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis] Length = 409 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 85/270 (31%), Gaps = 33/270 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 75 VALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKTCLIQDRQSSNYHRCGRTDKGVSAF 134 Query: 59 RQ----------VAHFDLVREWVPV----------ILCKALNAYLKISDTISILNLSIVD 98 Q F L K LN L I I N + Sbjct: 135 SQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVKMLNRVL--PHDIRIWNWAPAA 192 Query: 99 KQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + F ARF R+Y Y + L A + D N+ + F Sbjct: 193 EGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDFRNLCKMDVG----NGVLQF 248 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +S +H ++ V +FL+ Q+R + L L+G + Sbjct: 249 ERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMALLLLIGQKLEAPEII 308 Query: 219 EKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + L + RK +A L + Sbjct: 309 NQLLDVQSNPRKPQYSMAVDYPLVLYHCHF 338 >gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 401 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 96/266 (36%), Gaps = 26/266 (9%) Query: 4 YCMIIEYNGSGYFG-WQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 +I Y G GYFG N +I+G IE A++ + V RTD Sbjct: 43 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 102 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A + + + + +N++L + I + R + Y+ Sbjct: 103 GVSAANNLISLKMGLDGNY---IERINSFLPETIRIQDVVKVSHSFNAKTRVDSRTYEYI 159 Query: 114 Y-RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + ++ + P+ D + + V H+F + + + ++ Sbjct: 160 FPSYAIQKIDSEHPEINVEYNPQQEDIDYFNSVISNYVKTHNFQNYTFNTKETKADSKSN 219 Query: 173 DHFDVNSFGNLIE--------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + ++ L++ + + +SF+ QIR +G ++ + + + + ++ Sbjct: 220 NRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIMKT 279 Query: 225 Q----DRKECGPLAPPEGLYFDSVEY 246 + + P AP GL+ D + Sbjct: 280 SFTLINWRSVIPTAPAHGLFLDQCHF 305 >gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii] Length = 318 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--------TGEIVVVHGAGRTD 52 M + + + Y G+GY G QR ++I+G +E+A+ + + A RTD Sbjct: 1 MEKAALFVVYCGAGYKGMQRNPGAATIEGVLEEALVRAGAIGSNGCSRNWLDWKRAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V AL QV L ++ L N +L +I +L V F A+ R Y Sbjct: 61 KEVSALGQVVSARL---YLTPDLVHRTNEFL--PGSIRLLGFKRVPDDFSAKKMCASRRY 115 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + + N + + RT+ Sbjct: 116 EYVLPIFAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVRPGDREARRTV 175 Query: 173 DHFD-----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 F + I V+ARSF+ QIR VG V T + +AL++ + Sbjct: 176 VEFRAADKIWIGGSEFVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALRS-EV 234 Query: 228 KECGPLAPPEGLYFDSVEY 246 P AP GL D Y Sbjct: 235 DVIVPTAPEVGLLLDESFY 253 >gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta] Length = 483 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 140 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 198 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 199 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 255 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 256 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSA 315 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 316 RRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 374 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 375 -GTEKVDVPKAPGLGLVLERVHFEKYN 400 >gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio] gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio] Length = 460 Score = 89.9 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 90/271 (33%), Gaps = 33/271 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 60 VALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVSAF 119 Query: 59 RQVAHFDLVREWV---------------------PVILCKALNAYLKISDTISILNLSIV 97 QV DL + K LN L I IL + V Sbjct: 120 SQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVL--PHDIRILQWAPV 177 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARF R+Y Y L L A + D N+ G Sbjct: 178 ESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDV---GNGVLQF 234 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 R+I + P + N L +V + L+ Q+R + L L+G Sbjct: 235 QRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMALLLLIGQKLEAPEV 294 Query: 218 LEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +++ L + RK +A L + Sbjct: 295 IDQLLDVEKNPRKPQYSMAVDYPLVLYDCHF 325 >gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis] gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis] Length = 438 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 88/275 (32%), Gaps = 42/275 (15%) Query: 2 IRY-CMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDS 53 RY + + Y G ++G+ Q + +++ I KA+ + + GRTD Sbjct: 101 KRYVALKVMYFGQRFYGFSSEGQMD-PTVESEIFKALERTRLLIGDKKEIQYSRCGRTDK 159 Query: 54 GVHALRQVAHFDL--------------------VREWVPVILCKALNAYLKISDTISILN 93 GV A+ QV L + + LN L + I I+ Sbjct: 160 GVSAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVL--PNDIRIIG 217 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 V F ARFS + R Y Y L + D N Sbjct: 218 WCPVPNDFSARFSCLSREYKYFFRGDNLNLLAMESAGKKFIGEHDFRN-------FCKMD 270 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 S I + L I++ +FL Q+R V L ++G G Sbjct: 271 AMNVHNYRRNITSFEISPCH--ERYEGNQLFAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 328 Query: 214 TSTDLEKALQA--QDRKECGPLAPPEGLYFDSVEY 246 + ++ L RK P+AP L S ++ Sbjct: 329 SPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDF 363 >gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL YB-4239] Length = 491 Score = 89.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 17/236 (7%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M + Y G Y G Q + +++ I KA+ V E V GRTD Sbjct: 128 MRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKCGRTD 187 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV L P ++ I D + HA Sbjct: 188 KGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPADIKVHAICLR----P 243 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS-----S 167 R + + +LD + M AA++ G HDF F + Sbjct: 244 PENFDARFSCKERHYRYLFRKTSTLDIDLMAQAAEYYEGLHDFRNFCKLDGSKQLTSFVR 303 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 IR ++S GNL ++ +FL Q+R V L LVG + ++ + Sbjct: 304 DIRRSKIIPLDSDGNLYCFDLIGNAFLWHQVRCMVAILFLVGQKLESPEIVKDLMD 359 >gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo sapiens] gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens] gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct] gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct] gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens] gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 399 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 56 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 114 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 115 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 171 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 172 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 231 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 232 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 290 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 291 -GTEKVDVPKAPGLGLVLERVHFEKYN 316 >gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760] gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760] Length = 403 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 96/266 (36%), Gaps = 26/266 (9%) Query: 4 YCMIIEYNGSGYFG-WQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDS 53 +I Y G GYFG N +I+G IE A++ + V RTD Sbjct: 45 VAVIFSYVGRGYFGLMYLNNNPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCARTDK 104 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV A + + + + +N++L + I + R + Y+ Sbjct: 105 GVSAANNLISLKMGLDGNY---IERINSFLPETIRIQDVVKVSHSFNAKTRVDSRTYEYI 161 Query: 114 Y-RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + ++ + P+ D + + V H+F + + + ++ Sbjct: 162 FPSYAIQKIDSEHPEINVEYNPQQEDVDYFNSVISNYVKTHNFQNYTFNTKETKADSKSN 221 Query: 173 DHFDVNSFGNLIE--------IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + ++ L++ + + +SF+ QIR +G ++ + + + + ++ Sbjct: 222 NRYIISMSAQLVQRNGLNVIAVSIHGQSFMLWQIRRMIGFAIVLTNFRLPIEQMNEIMKT 281 Query: 225 Q----DRKECGPLAPPEGLYFDSVEY 246 + + P AP GL+ D + Sbjct: 282 SFTLINWRSVIPTAPAHGLFLDQCHF 307 >gi|322823466|gb|EFZ29213.1| hypothetical protein TCSYLVIO_4538 [Trypanosoma cruzi] Length = 409 Score = 89.6 bits (220), Expect = 4e-16, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 88/255 (34%), Gaps = 20/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 79 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V + P ++ ++++ + +Y+ Sbjct: 80 ALGNVFSLTVRASSWPT----------DSPQKPALDYCAMLNSALPVTIRIVGWAYVDDT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF- 175 + R + + L+ E M AA L G H+F F S Sbjct: 130 FDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVRSV 189 Query: 176 ----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 190 GIFASEALPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKPVY 249 Query: 232 PLAPPEGLYFDSVEY 246 PLA L + Sbjct: 250 PLADGTPLVLWDCHF 264 >gi|255322348|ref|ZP_05363494.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] gi|255300721|gb|EET79992.1| tRNA pseudouridine synthase A [Campylobacter showae RM3277] Length = 317 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 4/205 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 +R ++ Y+GS + G Q Q + + ++ ++ A+ V G + + RTD GVHA QV Sbjct: 1 MRLKLVFSYDGSKFQGSQTQPHENGVEDALGVALAHV-GIFSKIISSSRTDKGVHANNQV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + ++L + D FH R+ A R+Y Y I + Sbjct: 60 ACVECGEHFKDFVRLRSLVNRHAHPAIHVKFISRVKD-GFHPRYDATARAYRYVINHGEF 118 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 L D VG HDF+ F + SP+R + G Sbjct: 119 SPFLSP--YETFIPKFDLNLANELLALFVGEHDFSAFMKLGSDVKSPVRRVSKAFCYERG 176 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLK 206 I A FL Q+R V S+ Sbjct: 177 ERTIIVFKANGFLRAQVRLMVASVL 201 >gi|148683104|gb|EDL15051.1| mCG23338, isoform CRA_b [Mus musculus] Length = 284 Score = 89.2 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 27/241 (11%) Query: 32 EKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-----KALNAYLKI 85 ++A + + V + RTD+GVHAL AH D+ R KALN +LK Sbjct: 10 QEAAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKH 69 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-----SLDCE 140 +L V FHAR +A R+Y YR+ T + + LD Sbjct: 70 PAI-RVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMA 128 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-------------FDVNSFGNLIEIR 187 M+ AAQHL+G HDF+ F+S ++ +RT+ + + + Sbjct: 129 AMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLE 188 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVE 245 ++SFL+ Q+R L VG G T ++ L++QD K +AP GL+ SV Sbjct: 189 FESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGLFLKSVL 248 Query: 246 Y 246 Y Sbjct: 249 Y 249 >gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens] Length = 365 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 22 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 80 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 81 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 137 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 138 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 197 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 198 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 256 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 257 -GTEKVDVPKAPGLGLVLERVHFEKYN 282 >gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo sapiens] gi|114152895|sp|Q9Y606|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens] gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens] gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens] gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens] gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct] gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens] Length = 427 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 142 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 143 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 199 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 200 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 259 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 260 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 318 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 319 -GTEKVDVPKAPGLGLVLERVHFEKYN 344 >gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Anolis carolinensis] Length = 406 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + + Sbjct: 61 RKIVLLVAYSGKGYHGMQRNVGNSQFKTIEDDLVLALIQSGCIPENHGEDMKKMSFQRCA 120 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + W+ + + +N +L I IL L V F+++ Sbjct: 121 RTDKGVSAAGQIVSLKV---WLIEDILQKINNHL--PPHIRILGLKRVTGGFNSKNKCDA 175 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA-------AQHLVGRHDFTTFRSIH 162 R+Y Y + T + + + + + Sbjct: 176 RTYSYMLPTFAFAHKDCDFQDHTFHLNTETLATVNRLLAGYKGTHNFHNFTSQKGPKDPS 235 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + V ++V +SF+ QIR +G + + G + + +E++ Sbjct: 236 AKRYIMEMYCEEPFVRQGMEFAVMKVKGQSFMMHQIRKMIGLVIAIVKGYASESIMEQSW 295 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 296 --GEEKVDVPKAPGLGLVLERVHFEKYN 321 >gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2 [Sus scrofa] gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus scrofa] Length = 400 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 57 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 115 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 116 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCD 170 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + + G H+F F S Sbjct: 171 ARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQKGPREP 230 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG + + G + LE++ Sbjct: 231 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLERS 290 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 291 W--GEAKVDVPKAPGLGLVLERVHFEKYN 317 >gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus] gi|182676393|sp|Q4KM92|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus] gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus] Length = 423 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 195 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNFHNFTSQKGPREPS 254 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 255 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 314 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 315 --GEEKVDVPKAPGLGLVLERVHFEKYN 340 >gi|57085889|ref|XP_536533.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) [Canis familiaris] Length = 480 Score = 89.2 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 92/274 (33%), Gaps = 40/274 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + A+ + + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVP-------------------VILCKALNAYLKISDTISILNLSIVDK 99 QV DL + + LN L I +L + V+ Sbjct: 124 GQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVL--PPDIRVLAWAPVEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA-----QHLVGRHD 154 F ARFS + R+Y Y + A + D N+ + Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVL 241 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F + L + VV ++FL+ Q+R + L L+G G Sbjct: 242 FAQVELVGQSLD-------KEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFLIGQGMEK 294 Query: 215 STDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +++ L + +K +A L ++ Sbjct: 295 PEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus musculus] gi|114152896|sp|Q9WU56|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I; Flags: Precursor gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus] gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus] Length = 423 Score = 88.8 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 195 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 254 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 255 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 314 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 315 --GEEKVDVPKAPGLGLVLERVHFEKYN 340 >gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus] Length = 423 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV + W+ + +N++L I IL L V F+++ Sbjct: 140 RTDKGVSAAGQVVSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDA 194 Query: 110 RSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R+Y Y + T ++ + + H+FT+ + + Sbjct: 195 RTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPS 254 Query: 166 SSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + I+V +SF+ QIR VG + + G + LE++ Sbjct: 255 ARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 314 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 315 --GEEKVDVPKAPGLGLVLERVHFEKYN 340 >gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda melanoleuca] Length = 426 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 89 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQ-SGCIPENHGEDMRKMSFQRC 147 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 148 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCD 202 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + G H+F F S + Sbjct: 203 ARTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPHEA 262 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG + V G + LE++ Sbjct: 263 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLERS 322 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 323 W--GEAKVDVPKAPGLGLVLERVHFEKYN 349 >gi|260220773|emb|CBA28673.1| tRNA pseudouridine synthase A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 192 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 85/175 (48%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + ++ +++ + FH R SAI R Y Y ++ ++E GR Sbjct: 1 MRVCARSFRRHVQRPGIPGLAKXXXXXXXFHCRASAISRRYAYVLLESPIRPSVETGRVG 60 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 +LD +MR AA +L+G HDFT+FR+ CQA SP++ + D + G I A Sbjct: 61 WTFNNLDEMSMRKAADYLIGEHDFTSFRAAQCQALSPVKNVMRIDFHKRGAYWRIEFEAN 120 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +FLH IR+ +G L +G K +E+ L A+ RK P P+GLYF Y Sbjct: 121 AFLHHMIRNIMGCLVQIGQRKKPPEWMEEVLAARSRKVAAPTFSPDGLYFLGPRY 175 >gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 409 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 87/255 (34%), Gaps = 20/255 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G Y G +Q+ ++++ + A+ V + + GRTD GV Sbjct: 20 RKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQDGPIDLARCGRTDKGVS 79 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL V + P + ++++ + +Y+ Sbjct: 80 ALGNVFSLTVRASSWPT----------DSPQKPPLDYCAMLNSALPVTIRIVGWAYVDDT 129 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF- 175 + R + + L+ E M AA L G H+F F S Sbjct: 130 FDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVHNFRNFCKTDVVNVSNYERDVRSV 189 Query: 176 ----DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + + A SFL+ QIR + L LVG G + + L+ DRK Sbjct: 190 GIFASEAFPELVSYLEIHANSFLYHQIRCTMEVLFLVGRGLEDPEVVTQLLERGDRKPVY 249 Query: 232 PLAPPEGLYFDSVEY 246 PLA L + Sbjct: 250 PLADGTPLLLWDCHF 264 >gi|223558061|gb|ACM91066.1| tRNA pseudouridine synthase A [uncultured bacterium 34R1] Length = 189 Score = 88.8 bits (218), Expect = 6e-16, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 5/188 (2%) Query: 60 QVAHFDLVREW-VPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 AHFD+ LC++LN L +++ + V HARF A R+Y Y + T Sbjct: 1 MYAHFDVDAPIADTDGLCRSLNGLL--GRDVAVYAIFPVADDAHARFDATSRTYKYFLHT 58 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 ++P +W LD E M AA+HL+ DFT+F +H + + + Sbjct: 59 AKSP--FLYPLSWECHFDLDFELMNEAAEHLLHYTDFTSFSKLHTDVKTNNCRVTYAHWE 116 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 G + A FL +R+ VG+L VG + T + + ++A+DR E G P Sbjct: 117 RVGEQWVFTITADRFLRNMVRAVVGTLVEVGRHRITVDEFCRIIEAKDRCEAGNSMPGNA 176 Query: 239 LYFDSVEY 246 L+ + Y Sbjct: 177 LFLWDITY 184 >gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana) tropicalis] Length = 394 Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 28/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAI---------FLVTGEIVVVHGAG 49 ++ +++ Y G GY+G Q N +I+ ++ A+ F + + + Sbjct: 69 RKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQRCA 128 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV AL Q+ L+ + +N++L I I+++ V K F + + Sbjct: 129 RTDKGVSALSQLVSVRLLPSC--SNPVEKINSHL--PPEILIIDMKRVTKGFCPKKMCDK 184 Query: 110 RSYLYRIITRQ-APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 RSY Y + T + A + D N+ G H+F F S Sbjct: 185 RSYSYMVPTFALSCCAPSVPDSNFRMPREDFHNINNLLSFYKGTHNFHNFTSRKAFEDPS 244 Query: 169 IRTID------HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 V +I + +SF+ QIR VG + + G + L + + Sbjct: 245 SFRHMLDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFLPQCM 304 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 Q + K P AP GL + V Y+ Sbjct: 305 QRE--KINIPPAPGLGLVLERVHFDWYN 330 >gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar] gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar] Length = 392 Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 88/267 (32%), Gaps = 26/267 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---VTG------EIVVVHGAG 49 + +++ Y+G GY+G QR +I+ + A+ + + + Sbjct: 50 RKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCA 109 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV L W+ + + +N+ L + L A Sbjct: 110 RTDKGVSAAGQVVSLKL---WMIEDVMEKINSNLPPQIRVLGLKRVTGGFNSKNSCDART 166 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 SY+ + K A + + + G H+F F S Sbjct: 167 YSYMLPTVAFSPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFTSQKAAWDPSA 226 Query: 170 RTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 R EI V +SF+ QIR +G + V G L+++ Sbjct: 227 RRYITEMSCGEPFVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEVLKRSW- 285 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 286 -GEEKVDVPKAPGLGLVLEKVHFDRYN 311 >gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan troglodytes] Length = 427 Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 142 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 143 ARTDKGVSAAGQVVSLKV---WLIEDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 199 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 200 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSA 259 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 260 CRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW- 318 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 319 -GTEKVDVPKAPGLGLVLERVHFEKYN 344 >gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta] Length = 480 Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 95/268 (35%), Gaps = 28/268 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALN-----------------AYLKISDTISILNLSIVDKQF 101 QV DL ++ + N + I IL + V+ F Sbjct: 124 GQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRILAWAPVEPSF 183 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 ARFS + R+Y Y + A + D N+ R+I Sbjct: 184 SARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGTHDFRNLCKMDV---ANGVINFQRTI 240 Query: 162 -HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 Q ++ L + V ++FL+ Q+R + L L+G G +++ Sbjct: 241 LSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDE 300 Query: 221 AL--QAQDRKECGPLAPPEGLYFDSVEY 246 L + +K +A L ++ Sbjct: 301 LLNIEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|224071794|ref|XP_002194956.1| PREDICTED: similar to pseudouridylate synthase 1 [Taeniopygia guttata] Length = 474 Score = 88.8 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 89/268 (33%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + + Sbjct: 128 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCA 187 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + + + + +N +L I IL L V F+++ Sbjct: 188 RTDKGVSAAGQIVSLKV---RLIDDILEKINNHL--PSHIRILGLKRVTGGFNSKNKCDA 242 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDC-------ENMRIAAQHLVGRHDFTTFRSIH 162 R+Y Y + T + L D + R Sbjct: 243 RTYSYMLPTFAFAHKDHDVQEELFRLDRDTLERVNRLLACYKGTHNFHNFTSQKGPRDPS 302 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + V I+V +SF+ QIR +G + + G + +E++ Sbjct: 303 AKRYIMEMYCGEPFVRENVEFAVIQVRGQSFMMHQIRKMIGLVIAIVKGYAAESIMERSW 362 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 363 --GEEKVDVPKAPGLGLVLEKVHFEKYN 388 >gi|50756277|ref|XP_415090.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 409 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 93/268 (34%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + + Sbjct: 64 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRCA 123 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A Q+ + + + + +N +L I IL L V F+++ Sbjct: 124 RTDKGVSAAGQIVSLKV---RLIDDILEKINNHL--PSHIRILGLKRVTGGFNSKNKCDA 178 Query: 110 RSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y + T A + E + G H+F F S Sbjct: 179 RTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFTSQKGPKDPS 238 Query: 169 IRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I+V +SF+ QIR +G + + G + +E++ Sbjct: 239 ARRYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIERSW 298 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 299 --GEEKVDVPKAPGLGLVLERVHFEKYN 324 >gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus] Length = 481 Score = 88.4 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 32/270 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ LN L I +L + V+ Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVL--PADIRVLAWAPVEP 183 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y +A A + D N ++ + V T Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + + + ++FL+ Q+R + L L+G G + Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEV---IGQAFLYHQVRCMMAILFLIGQGMEKPEII 300 Query: 219 EKALQAQD--RKECGPLAPPEGLYFDSVEY 246 ++ L Q +K +A L ++ Sbjct: 301 DELLNIQKNPQKPQYSMAVEFPLVLYDCKF 330 >gi|313665546|ref|YP_004047417.1| tRNA pseudouridine synthase A [Mycoplasma leachii PG50] gi|312949580|gb|ADR24176.1| putative tRNA pseudouridine synthase A [Mycoplasma leachii PG50] Length = 249 Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 95/248 (38%), Gaps = 9/248 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N SIQ + KAI V GA +TD+ VHAL Q Sbjct: 5 ILLTLCYDGSNYHGWINQINSISIQTVLNKAIKKVIKTSEFKTIGASKTDANVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + KA+N L I ILN V+ F+ R + Y Y I + Sbjct: 65 LLIIYFTPILEKFIKAINKAL--PKDIRILNAKFVNSDFNIR-EVEYKIYNYYINDYKFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ---ASSPIRTIDHFDVNS 179 + + + +D ++ VG H+F F + R ID V Sbjct: 122 IFTNRYEYFWKHSKIDILKLQEIFNLFVGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG-KWTSTDLEKALQAQDRKECGPLAPPEG 238 N + I+ A F+ QIR + + K L + LQ K+ + +G Sbjct: 182 INNKVVIQFKATGFIRYQIRIIIANCLNAYLNYKINVNTLIEMLQ-GIGKKTPFIIEAKG 240 Query: 239 LYFDSVEY 246 L +++ Sbjct: 241 LVLQQIKF 248 >gi|227499255|ref|NP_075781.3| tRNA pseudouridine synthase 3 [Mus musculus] gi|52783242|sp|Q9JI38|PUS3_MOUSE RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus] gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus] Length = 481 Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 95/270 (35%), Gaps = 32/270 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ LN L I +L + V+ Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVL--PADIRVLAWAPVEP 183 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN-MRIAAQHLVGRHDFTTF 158 F ARFS + R+Y Y +A A + D N ++ + V T Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 243 Query: 159 RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + + + + ++FL+ Q+R + L L+G G + Sbjct: 244 CAQVQLVAQSPGEERRQEPFQLCQFEV---IGQAFLYHQVRCMMAILFLIGQGMEKPEII 300 Query: 219 EKALQAQD--RKECGPLAPPEGLYFDSVEY 246 ++ L Q +K +A L ++ Sbjct: 301 DELLNIQKNPQKPQYSMAVEFPLVLYDCKF 330 >gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407] Length = 522 Score = 88.4 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 84/291 (28%), Gaps = 50/291 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVT---------GEIVVVHGA---- 48 + + Y G Y G++ Q +G +I+ + KA+ + V + Sbjct: 60 IALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGASADEVDLVRCEYSK 119 Query: 49 -GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV A QV + + K LN L D + + F ARFS Sbjct: 120 CGRTDRGVSAFGQVVALRVRSNKR-AVYAKVLNRLLP-PDIRVLAWCATPPADFSARFSC 177 Query: 108 IRRSYLYRIITRQAPLALEKG-----------RAWLIPKSLDCENMR-IAAQHLVGRHDF 155 R Y Y + +D L +F Sbjct: 178 RERQYRYFFTQPAYFTEDGSRPGPTSSAGSASQPPDGWLDIDAMRDAATRFVGLHDFRNF 237 Query: 156 TTFRSIHCQASSPIRTI------------------DHFDVNSFGNLIEIRVVARSFLHTQ 197 + R SF + V +FL Q Sbjct: 238 CKVDPSKQITNFERRIFAAGITEVADVHSSLRCLSSSASSVSFPRVYSFDVRGSAFLWHQ 297 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 IR V L LVG G+ + + + L AQ + P+A L + Sbjct: 298 IRHMVAVLFLVGQGREPADVVSQLLGVAAQPGRPNYPMADETPLVLWDCIF 348 >gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864] Length = 548 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 71/276 (25%), Gaps = 33/276 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTGEIVVV---HGAGRTDSGVHALR 59 + I Y G Y G Q + +++G + A+ + + GRTD+GV A Sbjct: 142 IALKIAYLGWKYNGLAIQPDVETVEGHLISALKTCMLIPDLSWANYSRCGRTDAGVSAFG 201 Query: 60 QVAHFD-------------------------LVREWVPVILCKALNAYLKISDTISILNL 94 QV D + LN L + Sbjct: 202 QVVSLDVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPADIRVVAWTP 261 Query: 95 SIVDKQFHARFSAIRRSYLY--RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + + Y + + +A + C+ R Sbjct: 262 VPLAFDARFSCLYRKYKYFFPKNNMNIEAMQRAAQYFVGTHDYRNFCKTNFDNGVKSFVR 321 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 T + E+ V+ +FL+ Q+R L +VG G Sbjct: 322 RILAFDVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQVRCMTSILFMVGQGL 381 Query: 213 WTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +E L + + +A L + Sbjct: 382 EPPEVVEHMLDIEKCPNRPNYNMASDVPLVLYDCVF 417 >gi|222834648|gb|EEE73111.1| predicted protein [Populus trichocarpa] Length = 225 Score = 88.4 bits (217), Expect = 9e-16, Method: Composition-based stats. Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 24/210 (11%) Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV HFD + P + N +L I++ V FH+R A R Y Y ++ Sbjct: 1 MQVVHFDTPLDRAPFSWVRGTNTFL--PPDIAVQWAQPVPDAFHSRACATARRYAYVLLQ 58 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH---- 174 ++E GR + +LD + M+ AAQHL+G HDF++FR+ CQA SP++T+ Sbjct: 59 SPVRPSVEAGRVGWVFHALDGDAMQAAAQHLLGEHDFSSFRASGCQAKSPVKTLHRLSIT 118 Query: 175 ------------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 D +FLH +R+ +G L +G G + Sbjct: 119 RRMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGAYAPQ 178 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +++ L A+ R P P+GLYF Y Sbjct: 179 WMQQVLDARSRDAAAPTFSPDGLYFLGPVY 208 >gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera] Length = 466 Score = 88.0 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 89/291 (30%), Gaps = 57/291 (19%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSG 54 RY + + Y G ++G+ + + +++ I KA+ + + GRTD G Sbjct: 100 KRYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKG 159 Query: 55 VHALRQVAHF-------------------------------------DLVREWVPVILCK 77 V ++ QV D + + + Sbjct: 160 VSSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYEERREVKDEGGGDSLASEGEIDYMR 219 Query: 78 ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL 137 LN L I ++ V FHARFS + R Y Y + + Sbjct: 220 VLNRVL--PKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEH 277 Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D N S + L I++ +FL Q Sbjct: 278 DFRN-------FCKMDAVNVHNYRRHIISFE--IAPTNNRYDGNQLWAIKIKGSAFLWHQ 328 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 +R V L ++G G + ++ L + RK +AP L +S E+ Sbjct: 329 VRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEF 379 >gi|126323933|ref|XP_001378494.1| PREDICTED: similar to Pseudouridine synthase 1 [Monodelphis domestica] Length = 435 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 89/268 (33%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 100 RKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQ-SGCIPENHGEDMRKMAFQRC 158 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A Q+ + W+ + + +N++L I L R A Sbjct: 159 ARTDKGVSAAGQIVSLKV---WLIDNILEKINSHLPSHIRILGLKRVTGSFNSKNRCDAR 215 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 Y+ A + S E + G H F F S Sbjct: 216 TYFYMLPTF-AFAHKDHDVQDETYRLSSETLEKVNQLLASYKGTHSFHNFTSQKGPKEPS 274 Query: 169 IRTIDHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 R I+V +SF+ QIR VG + + G + +E++ Sbjct: 275 ARRYIMEMHCEAPFVREGMEFAVIKVKGQSFMMHQIRKMVGLVIAIMKGYVPESVMERSW 334 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 335 --GEEKVDIPKAPGLGLVLERVHFEQYN 360 >gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus] Length = 481 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 94/274 (34%), Gaps = 40/274 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 66 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 125 Query: 59 RQVAHFDLVREWVPVI-------------------LCKALNAYLKISDTISILNLSIVDK 99 QV DL ++ LN L I +L + V+ Sbjct: 126 GQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVL--PADIRVLAWAPVEP 183 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA-----QHLVGRHD 154 F ARFS + R+Y Y +A A + D N+ Sbjct: 184 SFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVIDFQRTIL 243 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + + R L + V+ ++FL+ Q+R + L L+G G Sbjct: 244 CAQVQLVAQSPGEERRQEP-------FQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEK 296 Query: 215 STDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +++ L Q +K +A L ++ Sbjct: 297 PEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKF 330 >gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299] gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299] Length = 294 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 81/255 (31%), Gaps = 26/255 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + + Y G GY G+QR +I+ +E+AI G V A RTD Sbjct: 5 RKIAAFLAYVGKGYQGFQRNPGARTIEDELERAIVAAGGISADNAGDFTKVQWTRAARTD 64 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q +V + V + +NA L + I V F+A+ RR Y Sbjct: 65 KGVSAVGQCIALRMVLDPPGV--LERINAAL--PEGFKIFGYKRVTGGFNAKTMCDRRRY 120 Query: 113 LYRIITRQAPLALEKGRAWLIP----KSLDCENMR---------IAAQHLVGRHDFTTFR 159 Y I T R D E + Sbjct: 121 EYVIPTCAFDPRRCLPRREDDKEAKAFVFDEELRARVNKILGNYCGTHNFHNYTVRVDPN 180 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 V + VV +SF+ QIR +G++ V G D Sbjct: 181 DAAAMRYIISFECGEPFVIDGVEFVRTTVVGQSFMLHQIRKLIGTMLCVVRGYLAEEDQI 240 Query: 220 KALQAQDRKECGPLA 234 AL+ ++ PLA Sbjct: 241 FALKTKESCSHEPLA 255 >gi|76638649|ref|XP_593895.2| PREDICTED: pseudouridylate synthase 1 isoform 1 [Bos taurus] gi|297484682|ref|XP_002694500.1| PREDICTED: pseudouridylate synthase 1 [Bos taurus] gi|296478661|gb|DAA20776.1| pseudouridylate synthase 1 [Bos taurus] Length = 433 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 100/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 90 RKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 148 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 149 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCD 203 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y+Y + T A + + + G H+F F S Sbjct: 204 ARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPHEP 263 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG + + G + LE+ Sbjct: 264 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLERC 323 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 324 W--GEAKVDVPKAPGLGLVLERVHFEKYN 350 >gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera] Length = 400 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 87/259 (33%), Gaps = 23/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++I+ + +A+ + E H GRTD GV + Sbjct: 57 ILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKSCCIESRETSNYHRCGRTDKGVSSF 116 Query: 59 RQVAHFDLVREWVPV---------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + P CK LN L I + V F ARF+ Sbjct: 117 SQVISLDIRSKLNPEDQYKLEDELPYCKILNRLL--PSNIRCIAWCPVPNDFSARFNCKF 174 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R+Y Y + I D N+ R + Sbjct: 175 RTYKYFFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDV---ANGVINYIRKVINAEVRMY 231 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDR 227 R + I A FL QIR +G L L+G+GK + + + L + + Sbjct: 232 RQDFRNISGYDMYQLIITSQA--FLWHQIRCLMGVLFLIGEGKEEAEIMLELLDIENCPK 289 Query: 228 KECGPLAPPEGLYFDSVEY 246 K LA L EY Sbjct: 290 KPQYNLAHEIPLNLWYCEY 308 >gi|149716663|ref|XP_001505142.1| PREDICTED: pseudouridylate synthase 3 [Equus caballus] Length = 479 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 86/265 (32%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 63 VALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 122 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL + + N L I L+ + Sbjct: 123 GQVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRVLAWAPVEPSF 182 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + + Sbjct: 183 SARFSCLERTYRYFFPRADLDIITMNSAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 242 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 Q +++ L + V+ ++FL+ Q+R + L L+G G +++ L Sbjct: 243 QVQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEVIDELLN 302 Query: 224 AQD--RKECGPLAPPEGLYFDSVEY 246 Q +K +A L ++ Sbjct: 303 IQKNPQKPQYSMAVEFPLVLYDCKF 327 >gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa] gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa] Length = 414 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 83/275 (30%), Gaps = 30/275 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R ++ Y G Y G Q+ +I+ + KA+ + E + GRTD GV Sbjct: 32 RRIALMFMYFGWEYNGLVEQQEIAGTIEEEMRKALMKTKLVESWENCGWNRCGRTDKGVS 91 Query: 57 ALRQVAHFDLVREWVP---------------------VILCKALNAYLKISDTISILNLS 95 A +QVA + + K LN+ L + + Sbjct: 92 AFKQVASLIVRSNEPEGEGVFWPAIAHTSSETAVKGELQYVKMLNSTLPTNIRVLAWAPV 151 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL--VGRH 153 + R + +Y + + + + + + Sbjct: 152 PENFSARYRCTQRTYTYAFPRANFDIEAMRQACQFLVGEHDFRNFCRIDMNKGRVEMNYI 211 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 ++ I +++ + D + +++ V FL QIR + L +G G Sbjct: 212 RTISYADISLISNNSLLASKQSDEVTHYEFLQLTVKGSGFLWHQIRCIMALLCEIGLGNE 271 Query: 214 TSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 + + L + K LAP L Y Sbjct: 272 KPEVISELLDIKLTPSKPIYGLAPAFPLCLFDCVY 306 >gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens] Length = 481 Score = 88.0 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 85/265 (32%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + LN L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|83320035|ref|YP_424629.1| tRNA pseudouridine synthase A [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123753714|sp|Q2SRI4|TRUA_MYCCT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|83283921|gb|ABC01853.1| tRNA pseudouridine synthase A, putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 249 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 93/249 (37%), Gaps = 11/249 (4%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHALRQVA 62 + + Y+GS Y GW Q N S Q + KAI V GA +TD+ VHAL Q Sbjct: 5 ILLTLCYDGSNYHGWINQTNSISTQTVLNKAIKKVIKTSEFKTIGASKTDANVHALDQKV 64 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + A+N L + I ILN VD F+ R + Y Y I + Sbjct: 65 LLIIYFTPILEKFINAINKAL--PEDIRILNAKFVDPNFNIR-EVDYKIYNYYINDHKFD 121 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ---ASSPIRTIDHFDVNS 179 + + + +D ++ +G H+F F + R ID V Sbjct: 122 IFTNRYEYFWKHSKIDILKLQEIFNLFIGEHEFKLFSGLKENEWDNYQTKRIIDDIKVLR 181 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG-KWTSTDLEKALQA-QDRKECGPLAPPE 237 N + I+ A F+ QIR + + K L + LQ + A + Sbjct: 182 INNKVVIQFKATGFIRYQIRIIIANCLNAYLNYKVNINTLTEMLQGIGKKTPFIIKA--K 239 Query: 238 GLYFDSVEY 246 GL +++ Sbjct: 240 GLVLQEIKF 248 >gi|298229126|ref|ZP_06962807.1| tRNA pseudouridine synthase A [Streptococcus pneumoniae str. Canada MDR_19F] Length = 57 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-GEIVVVHGAGRTDSGVH 56 M RY I Y+G + G+QRQ + S+Q IEK + + G+ + VHGAGRTDSGVH Sbjct: 1 MTRYKATISYDGYAFAGFQRQPHARSVQEEIEKTLTRLNKGQTITVHGAGRTDSGVH 57 >gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa] gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa] Length = 465 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 82/287 (28%), Gaps = 45/287 (15%) Query: 2 IRY-CMIIEYNGSGYFGW----QRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRT 51 RY + + Y G ++G+ Q +++ I KA+ + + GRT Sbjct: 92 RRYVALKVMYFGQRFYGFSLEAQMDP---TVESEIFKALETTRLLIGDRKEIQYSRCGRT 148 Query: 52 DSGVHALRQVAHFDL----------------------VREWVPVILCKALNAYLKISDTI 89 D GV A+ QV L + + + LN L I Sbjct: 149 DKGVSAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRI 208 Query: 90 SILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL---------EKGRAWLIPKSLDCE 140 D + Y + + R + ++ Sbjct: 209 VGWCPVPSDFSARFSCLSREYKYFFWNDNLNLLVMETAGKKLIGEHDFRNFCKMDAVKVH 268 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 N R + S I L I++ +FL Q+R Sbjct: 269 NYRRNVMSFEISPCDMSHSSGMGSVKWMITKPSIRTRFEGHQLYAIKIKGSAFLWHQVRC 328 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFDSVEY 246 V L ++G G + ++ L + RK +AP L S E+ Sbjct: 329 MVAVLFMIGQGLESPEVIDALLDTRTLRKPQYLMAPEIPLVLLSCEF 375 >gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio] gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio] Length = 376 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 94/268 (35%), Gaps = 29/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAI--FLVTGE-------IVVVHGAG 49 + +++ Y+G GY+G QR +I+ + A+ E + + Sbjct: 40 KKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRSA 99 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ +V + W+ + + +NA+L I +L V F+++ + Sbjct: 100 RTDKGVSAVGRVVSLKV---WMIENILEKINAHL--PPRIRVLGCKRVTGGFNSKNNCYA 154 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG--RHDFTTFRSIHCQASS 167 R+Y Y + T + D L + + S Sbjct: 155 RTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKGTHNFHNFTSQKGHRDPS 214 Query: 168 PIRTIDHFDVNSFG-----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 +R I H I V +SF+ QIR +G + V G +EK+ Sbjct: 215 AMRYITHMSCGEPFIRKDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVMEKSW 274 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 + K AP GL + V Y+ Sbjct: 275 --GEEKVGVSKAPGLGLVLERVHFDGYN 300 >gi|195135260|ref|XP_002012052.1| GI24889, isoform A [Drosophila mojavensis] gi|193918316|gb|EDW17183.1| GI24889, isoform A [Drosophila mojavensis] Length = 499 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 69/287 (24%), Positives = 110/287 (38%), Gaps = 58/287 (20%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTRFRGIQKTINKLEESRVDTNSVQGCLELALRVFRPVNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L S I +L+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERNDGKCYDTTILTGVLNRTLDKQSLPIRVLSTQRVADTFHCRYH 120 Query: 107 AIRRSYLYRI----------------------ITRQAPLALEKGRAWLIPKSLDCENMRI 144 AI R+YLYR+ P+ +L + D E + Sbjct: 121 AIGRTYLYRVAVSKQKTTVLPDAKSSSLRNRAFEAFLPVEEWDRCYFLQNNNFDIERLIA 180 Query: 145 AAQHLVGRHDFTTF----RSIHCQASSPIRTIDHFDVNS------------------FGN 182 A++ L+G HD+ TF R P+ T+ D + + Sbjct: 181 ASRMLIGVHDYRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGRSLALGPNATLATENYD 240 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 +I + A+SFL+ Q+R VG+L + +G+ + + L + Sbjct: 241 YWDIEIKAKSFLYKQVRRIVGTLLALAEGRIDERCIYQMLTIPSKHS 287 >gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus] gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus] Length = 470 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 97/262 (37%), Gaps = 26/262 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G + G+ Q++ ++I+ + A+ V E H GRTD GV A Sbjct: 76 ILLRFFYLGWDFQGYATQEDSANTIEHHLFNALTRVCLIESRESSNYHRCGRTDKGVSAF 135 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV D+ ++ P C+ LN L ++ + + + + ARF Sbjct: 136 HQVVSLDVRSKFPPESQLAPESLQNELNYCQLLNRVLP-AEIRCVAWMPTANPNYSARFD 194 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R+Y Y + + + S D N+ G T R++H Sbjct: 195 CRSRTYRYFFPRGSLDVDAMRKGCEFLVGSHDFRNLCKMDV---GNGVVTFQRNVHYAV- 250 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 IR +S +++ + ++FL Q+R + L LVG G+ T + + L + Sbjct: 251 --IRDSLKDGGDSSYDMLYFELRGKAFLWHQVRCIMAILILVGQGREDPTVIRELLDVEK 308 Query: 227 --RKECGPLAPPEGLYFDSVEY 246 RK LA L Y Sbjct: 309 NPRKPQYSLANDVPLNLYECLY 330 >gi|194208171|ref|XP_001496445.2| PREDICTED: similar to LOC617640 protein [Equus caballus] Length = 389 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 99/230 (43%), Gaps = 26/230 (11%) Query: 42 IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSI 96 V + + RTD+GVHAL AH D+ R KALN +L+ +L Sbjct: 141 PVKLTISSRTDAGVHALSNAAHLDVQRRSGQPPFSPEVLAKALNTHLRHPAI-RVLQAFR 199 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVG 151 V FHAR+SA R+YLYR+ T SLD M AAQHL+G Sbjct: 200 VPSDFHARYSATSRTYLYRLATGCPQPDQLSVFEQNRCWALRADSLDVAAMEEAAQHLLG 259 Query: 152 RHDFTTFRSIHCQASSPIRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQI 198 HDF+ F+S +S +RT+ + + ++SFL+ Q+ Sbjct: 260 THDFSAFQSAGSPTTSSVRTLRRASVSPDLPSPFVLPQESRRLRFWSLEFESQSFLYRQV 319 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 R L VG G T ++ L+++D + +AP GL+ SV Y Sbjct: 320 RRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQTRVAPAHGLFLKSVLY 369 >gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis mellifera] Length = 389 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 97/284 (34%), Gaps = 48/284 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTG------EIVVVHGAGRTDSG 54 + M++ Y G Y G Q + +I+GS+ A+ +T + + A RTD G Sbjct: 49 FVMVLGYLGKNYSGMQINRGIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTDKG 108 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+RQ+ L + K L I + ++ V + F+++ R+Y Y Sbjct: 109 VSAVRQIVSLQLPNHVNKEDINKHL------PKDIKVFDIKRVTRNFNSKNKCDARTYRY 162 Query: 115 RIITR------------------------QAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + T + ++ + D + L Sbjct: 163 VLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMIDGKPYNEFRLNSDMLDKLNEILKLF 222 Query: 151 G-----RHDFTTFRSIHCQASSPIRTIDHFDVN--SFGNLIEIRVVARSFLHTQIRSFVG 203 + + R + +A I + + + + V +SF+ QIR V Sbjct: 223 EGTHNFHNFTSKIRPMDPRAKRYIVYFRCIETFIANNMEFVVLEVQGQSFMLHQIRKMVS 282 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + T ++ A + K P+AP GL V Y+ Sbjct: 283 LIIGICRNIITIDFVKDAFSLE--KVDIPIAPGLGLSLHFVHYT 324 >gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca] Length = 359 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 28 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQ-SGCIPENHGEDMRKMSFQRC 86 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 87 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PPHIRILGLKRVTGGFNSKNKCD 141 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + G H+F F S + Sbjct: 142 ARTYFYMLPTFAFAHKDHDVQDERYRLSAETLRRVNGLLACYRGTHNFHNFTSQKGPHEA 201 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG + V G + LE++ Sbjct: 202 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLERS 261 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 262 W--GEAKVDVPKAPGLGLVLERVHFEKYN 288 >gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850 [Aureococcus anophagefferens] Length = 266 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 87/263 (33%), Gaps = 27/263 (10%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQK----NGSSIQGSIEKAIFLVT----GEIVVVHG 47 M RY + I Y G Y G+ Q +++ + A+ E Sbjct: 11 MSRYEQRCIALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKTCLVESRESCGYSR 70 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKI-SDTISILNLSIVDKQFHARFS 106 GRTD GV AL QV + +N ++ D + L V +F ARFS Sbjct: 71 CGRTDKGVSALGQVVGLRVRSAARAGEPLDYVNMLNRVLPDDVRALAWRPVVPEFSARFS 130 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQA 165 R+Y Y + + D M AA LV + Sbjct: 131 CASRTYRY----------FFPATSPNTGAAYDVPAMAAAAARLVGDHDFRNFCKMDVLHV 180 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-- 223 + R + DV G+ + ++FL +RS V L LVG+G ++ L Sbjct: 181 KNFRRVVYAADVRKTGDGFFFEIHGQAFLWHMVRSLVAVLFLVGEGLEPPAVVDALLDVA 240 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 RK +A L + Sbjct: 241 RTPRKPQYLIADERPLVLHDCAF 263 >gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta] gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta] Length = 497 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 89/253 (35%), Gaps = 24/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 100 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALSRTCLIDSRANSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPVI------------LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + ARF Sbjct: 160 CQVISIDLRSKHSPEFQLDPTALSTEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 218 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + RSY Y + L+ + D N H + +S A Sbjct: 219 CVSRSYRYYFPKGDLDIGAMSQACDLLERHADFRNFCKMDVHNGVTNYMRNLQSARVVAC 278 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T +D+ + + A +FL QIR + L LVG K + T + + L + Sbjct: 279 DENHTNSGYDMY------YLEIQANAFLWHQIRCIMAVLLLVGQKKESPTVISELLDVES 332 Query: 227 RKECGPLAPPEGL 239 +P GL Sbjct: 333 NPCKPQYSPAIGL 345 >gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74698445|sp|Q9UTB3|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05 gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 450 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 84/257 (32%), Gaps = 27/257 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 Y G Y G Q +++G + +A+ GRTD GV Sbjct: 94 VAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVS 153 Query: 57 ALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV ++ E P+I C LN L I I + + F ARFS +R Y Y Sbjct: 154 AMGQVISLNVRHSERRPIIYCDVLNRLL--PADIRITGYAFPPEGFDARFSCKQRHYKYL 211 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTID 173 +L+ R AA +L + + R + Sbjct: 212 FTKDYPGGSLDIDRM-----------NEAAALYLGEHDFRNFCKIDASKQITNYHRRILS 260 Query: 174 H--FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KE 229 ++ L + +FL Q+R + L L+G ++ + L + K Sbjct: 261 SKVICIDPSTGLYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPTKP 320 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 321 IYDMASEYPLILYDCDF 337 >gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries] gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries] Length = 400 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 98/269 (36%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 57 RKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 115 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I IL L V F+++ Sbjct: 116 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCD 170 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + G H+F F S Sbjct: 171 ARTYFYMLPTFAFAHKDHDLQDETYRLSAETLGRVNRLLACYKGTHNFHNFTSQKGPHEP 230 Query: 168 PIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R + V I+V +SF+ QIR VG + + G LE+ Sbjct: 231 SARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPEGVLERC 290 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 291 W--GEAKVDVPKAPGLGLVLERVHFEKYN 317 >gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1] Length = 491 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 75/259 (28%), Gaps = 18/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 131 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 190 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV ++ L+I + D + H+ Sbjct: 191 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSI-----CLR 245 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPI 169 + R + LD E M A+ G HDF F + Sbjct: 246 PPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVR 305 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--R 227 ++ + + +FL Q+R V L +G G + + + + Sbjct: 306 EIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLESPSIITDLMDTNKFPT 365 Query: 228 KECGPLAPPEGLYFDSVEY 246 K +A L E+ Sbjct: 366 KPQYEMAHDIPLVLYDCEF 384 >gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A-like [Pongo abelii] Length = 424 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 81 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 139 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 140 ARTDKGVSAAGQVVSLKV---WLIDNILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 196 Query: 109 RRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 Y + ++ + + H+FT+ + ++ Sbjct: 197 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQEPSA 256 Query: 167 SPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + IRV +SF+ QIR VG + + G LE++ Sbjct: 257 RRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPECVLERSW- 315 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 316 -GTEKVDVPKAPGLGLVLERVHFEKYN 341 >gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine synthase 3 [Nomascus leucogenys] Length = 481 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPELIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis] gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis] Length = 500 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 84/253 (33%), Gaps = 20/253 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 M I Y G Y G+ Q++ +I+G + +A+ H GRTD V A Sbjct: 103 VLMKITYFGWDYQGFACQEDSADTIEGYLFRALERTCLIESRATSNYHRCGRTDKEVSAF 162 Query: 59 RQVAHFDLVREWVPVILCK------------ALNAYLKISDTISILNLSIVDKQFHARFS 106 QV +L + P K LN L + + + + + + ARF Sbjct: 163 CQVISINLRSKHSPDTQMKPESLNTEIDYCSLLNRVLP-KNIQCVSWMPLRNPDYSARFD 221 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 I R+Y Y + + L+ D N + H + Sbjct: 222 CISRTYRYYFPKGDLDIDSMQQACQLLVCHGDFRNF--CKMDVHNGVTNYMRNLQHAEIR 279 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T + NS + + + A +FL QIR + L LVG + + K L Sbjct: 280 PCDNTERQLEQNSGYIMYYLEIKANAFLWHQIRCIMAVLLLVGQKNEQPSIITKLLDVGS 339 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 340 NPCKPQYTPAIGL 352 >gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda melanoleuca] Length = 480 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 32/270 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREW-------------------VPVILCKALNAYLKISDTISILNLSIVDK 99 QV DL + + LN L I +L + V+ Sbjct: 124 GQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVL--PPDIRVLAWAPVEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y + A + D N+ R Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDV---ANGVINFQR 238 Query: 160 SI-HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +I Q +++D L + V ++FL+ Q+R + L L+G G + Sbjct: 239 TILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEII 298 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 ++ L + +K +A L ++ Sbjct: 299 DELLNIEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|156538138|ref|XP_001608257.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 437 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 91/285 (31%), Gaps = 48/285 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 Y M++ Y G Y+G QR ++I+ + KA+ T + + A RTD Sbjct: 72 KNYAMMLGYCGKNYYGMQRNPGFNTIEEELIKAMLKADLITSEAFETIQNINFQRAARTD 131 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+RQV L + + + L + I + + V K F+++ R+Y Sbjct: 132 KGVSAVRQVVSLKLPEDPSKDSINETL------PEDIRVFAIKRVTKGFNSKSQCDARTY 185 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRI---------------------------- 144 Y + T + + + + M Sbjct: 186 SYTMPTFALAPENLELFQEMSEYNDVEKRMEQLSTIDGKPFHEYRLPQERKEKLTELLKV 245 Query: 145 --AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + + + + I ++V +SF+ QIR V Sbjct: 246 LEGTHNFHNFTSKVLPLDPRAKRYIMSFIAEEPFLVNNMEFITLKVKGQSFMLHQIRKMV 305 Query: 203 GSLKLVGDGKWTSTDLEK-ALQAQDRKECGPLAPPEGLYFDSVEY 246 + V + EK + K +AP GL + V Y Sbjct: 306 AMVIGVIRNIVPREEFEKTVFEQA--KYDITIAPSLGLMLNIVHY 348 >gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca] Length = 479 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 32/270 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREW-------------------VPVILCKALNAYLKISDTISILNLSIVDK 99 QV DL + + LN L I +L + V+ Sbjct: 124 GQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVL--PPDIRVLAWAPVEP 181 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y + A + D N+ R Sbjct: 182 SFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNLCKMDV---ANGVINFQR 238 Query: 160 SI-HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +I Q +++D L + V ++FL+ Q+R + L L+G G + Sbjct: 239 TILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEII 298 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 ++ L + +K +A L ++ Sbjct: 299 DELLNIEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82] Length = 446 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 56/271 (20%), Positives = 87/271 (32%), Gaps = 34/271 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL--VTGEIVVVHGAG-----RT 51 + + Y+G Y G Q +++G + A+ + + G G RT Sbjct: 50 RKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQEAGFEGCGWEKCGRT 109 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GV A QV + DTI +L S V +F ARFS + R Sbjct: 110 DRGVSAAGQVVSLWATTSKPTFEHDYLSILNRLLPDTIRVLAWSPVAPKFSARFSCLYRH 169 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 Y Y + + A + D N+ L + T FR A + Sbjct: 170 YKYFFSPLGLDIPRMQQAALRLVGDHDFRNL----CKLDPQKQITIFRRKVITAEIEPLS 225 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ------ 225 + + +V +FL+ Q+R + L LVG G + + L + Sbjct: 226 LAEN----GEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLEPPSVVSSLLNVEAGVEPT 281 Query: 226 ----------DRKECGPLAPPEGLYFDSVEY 246 DRK +A L Y Sbjct: 282 KDGDSPYEVVDRKPEYQMADALPLMLWECGY 312 >gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 91/290 (31%), Gaps = 50/290 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---VTGEIV------------- 43 + Y G Y G + +++ + KA+ ++ E Sbjct: 117 IALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSDRAERVP 176 Query: 44 -----------VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 AGRTD GV A QV + + + I LN L + Sbjct: 177 MRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRTDEMNYINV--LNRVLPEDIRVLAW 234 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL------------EKGRAWLIPKSLDCE 140 + F ARFS R Y Y RA LD E Sbjct: 235 CPNPPP-GFDARFSCRERRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWLDIE 293 Query: 141 NMRIAAQHLVGRHDFTTFR--SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 MR AA+H G HDF F + Q + R I H S + + +FL Q+ Sbjct: 294 AMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIHHSISQSIPQVYSFNLHGSAFLWHQV 353 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 R V L LVG G + + + + L RK +A L + Sbjct: 354 RHMVAILFLVGQGLESPSIVPELLDVAKNPRKPTYAMADDAPLVLWDCIF 403 >gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus] gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus] gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus] Length = 479 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 64 VALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRLVESRQTSNYHRCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 124 GQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRVLAWAPAEPSF 183 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR A L + + + + + Sbjct: 184 SARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSA 243 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q + ++ L + V+ ++FL+ Q+R + L L+G G +++ L Sbjct: 244 QVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 303 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 304 IEKNPQKPQYSMAVEFPLVLYDCKF 328 >gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine synthase 3-like [Pongo abelii] Length = 481 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAIEFPLVLYDCKF 329 >gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine synthase 3 [Pan troglodytes] Length = 481 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 83/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL + + N L I L+ + Sbjct: 125 GQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|320532726|ref|ZP_08033515.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] gi|320135064|gb|EFW27223.1| hypothetical protein HMPREF9057_01391 [Actinomyces sp. oral taxon 171 str. F0337] Length = 57 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHA 57 M R + + Y+G+ + GW Q +++G + A+ V E V + AGRTD+GVHA Sbjct: 1 MPRIRLDLAYDGTFFSGWAAQPGLRTVEGVLTCALATVVREPVRLTVAGRTDAGVHA 57 >gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8] Length = 455 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 88/268 (32%), Gaps = 34/268 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAI--FLVTGEIVVVHGAG-----RT 51 + + Y G + G QK+ +++G + A+ + + G G RT Sbjct: 79 RKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 138 Query: 52 DSGVHALRQVAHFD------------LVREWVPVILCKALNAYLKISDTISILNLSIVDK 99 D GV A QV +N +L DTI IL S VD Sbjct: 139 DRGVSAAGQVISLWVRSALSQEELTPTATPTEEHPFIYMINRHL--PDTIKILAWSPVDP 196 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F +R+S R Y Y +A + +P + D N+ + Sbjct: 197 SFSSRYSCTWRHYKYFFSPVGLDVAAMRAACAYLPGTHDFRNLCKIDPT---------KQ 247 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + +I D ++ G + + SFL+ +R+ +G L +G T L Sbjct: 248 LDQFRRDILHASISPVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLLP 307 Query: 220 KALQ-AQDRKECGPLAPPEGLYFDSVEY 246 + A + +A L Y Sbjct: 308 ALMNVAPGCRPEYMMADALPLTLWDCGY 335 >gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax] Length = 472 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 87/273 (31%), Gaps = 36/273 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 73 VALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRLIQDRQSSNYHRCGRTDKGVSAF 132 Query: 59 RQVAHFDLVREWVP-----------------------VILCKALNAYLKISDTISILNLS 95 QV DL + K LN L I IL+ + Sbjct: 133 SQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVL--PQDIRILDWA 190 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 + F ARF R+Y Y +AL A + D N+ + Sbjct: 191 PAAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVG----NGV 246 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 F AS H L + +FL+ Q+R + L L+G Sbjct: 247 LQFERTILSASVKPVQPQHVSSTDQYELFMFEIKGLAFLYHQVRCMMALLLLIGQKLEAP 306 Query: 216 TDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + + + + RK +A L + Sbjct: 307 EIINQLMDVQSNPRKPQYSMAVDYPLVLYDCHF 339 >gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens] gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct] gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct] gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct] gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct] Length = 481 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens] Length = 481 Score = 86.9 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|300782641|ref|YP_003762932.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] gi|299792155|gb|ADJ42530.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32] Length = 238 Score = 86.9 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 96/219 (43%), Gaps = 16/219 (7%) Query: 42 IVVVHGAGRTDSGVHALRQVAHFDLVR-------------EWVPVILCKALNAYLKISDT 88 V AGRTD+GVHA QV H D+V E +P + A + Sbjct: 2 PKSVVVAGRTDAGVHATGQVVHVDVVPLAPGSAGRVPVFAEGIPDLTRMAGRWNRLLPGD 61 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIIT-RQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 + +L I + F ARFSA+RR Y YR+ L + + L + M AA Sbjct: 62 VRVLGARIAPEGFDARFSAVRRHYRYRVSDAPWGVDPLRRHDTLAWNRPLSTDAMNAAAA 121 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 L+G HDF + ++ +L+E+RV A +F H+ +RS VG L L Sbjct: 122 ELLGLHDFAAYCKQRETGTTIRELQRLEWTRVDEHLLEVRVSADAFCHSMVRSLVGVLLL 181 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VGDG+ T K L++ R +AP GL V+Y Sbjct: 182 VGDGRRTDAWPAKVLESGIRDSA--VAPAHGLTLLGVDY 218 >gi|199559785|ref|NP_112597.3| tRNA pseudouridine synthase 3 [Homo sapiens] Length = 481 Score = 86.9 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1] Length = 415 Score = 86.9 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 95/264 (35%), Gaps = 25/264 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 +Y +++ + G+ Y G QR +I+ ++ +A+ + T + + RTD Sbjct: 31 KKYALLMGFQGTSYAGMQRNIGFETIESTLLRALLVTGCIDKNNYETPQSMHFQRCARTD 90 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA RQV + + LNA L D I I K F+ + + R Y Sbjct: 91 KGVHAARQVVAMRM---ILTENTVDELNAKL--PDDIRIFGAFRTTKGFNPKNACTGRRY 145 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-- 170 Y + T + R + +G H F F + + R Sbjct: 146 EYLLPTYALMPKEKVPVPEYRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDSCRRY 205 Query: 171 ----TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T+ + I+V +SF+ QIR +G + G +++ D Sbjct: 206 ITDFTVSEPFEREGIEWVRIQVKGQSFILHQIRKMIGLAVAIVRGHVKDDYMDRCFS--D 263 Query: 227 RKECGPLAPPEGLYFDSV---EYS 247 + P P GL+ D V Y+ Sbjct: 264 ERVDVPKIPGLGLFLDCVFFDYYN 287 >gi|126327379|ref|XP_001371991.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 575 Score = 86.9 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 95/269 (35%), Gaps = 28/269 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N ++I+ + +A+ + + H GRTD GV A Sbjct: 68 VALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 127 Query: 59 RQVAHFDLVREWVPV-------------------ILCKALNAYLKISDTISILNLSIVDK 99 QV +L + LN L I +L + V+ Sbjct: 128 GQVISLNLRSQLPRDKDPEDKNLKDTVNDSVEEICYTHILNRVL--PPDIRVLAWATVES 185 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 F ARFS + R+Y Y + A + D N+ + T Sbjct: 186 SFSARFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHDFRNLCKMDVANGVINFQRTIL 245 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 S Q + + L + V+ ++FL+ Q+R + L L+G + ++ Sbjct: 246 SAKVQLVAFGSPEEKLQQQESFQLCQFEVIGQAFLYHQVRCMMAILFLIGQRMEKAEIID 305 Query: 220 KAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + L + +K +A L ++ Sbjct: 306 ELLNIEKNPQKPQYSMAVEFPLVLYDCKF 334 >gi|126459314|ref|YP_001055592.1| tRNA pseudouridine synthase ACD [Pyrobaculum calidifontis JCM 11548] gi|166228753|sp|A3MU09|TRUA_PYRCJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|126249035|gb|ABO08126.1| Pseudouridylate synthase [Pyrobaculum calidifontis JCM 11548] Length = 257 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 82/247 (33%), Gaps = 36/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y + Y+G+ + G+ N +E A+ V G ++ RTD GV A+ Sbjct: 1 MP-YLYRVAYDGALFHGFTGHSNS------VEAALRRVFGH--LLGRGSRTDPGVSAVG- 50 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 NA L S S + R Sbjct: 51 -------------------NAVLAPSRLPLGYINSRLP-----RGVWTWAVAEVGEGFNP 86 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + D E MR A+ + + + + P+ T+D V Sbjct: 87 RRARRRRYLYVAPHWGEDVEAMREVAELFKGTHDFSSFIQFRGERGTPPVTTVDEVGVEV 146 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 G L+ + V + F + QIR ++ G G + +E+ L+ + R P AP EGL Sbjct: 147 AGRLVYLYFVGKGFRNKQIRKMAWAILAAGRGVVSRRYVEELLE-RPRPGAVPSAPAEGL 205 Query: 240 YFDSVEY 246 +EY Sbjct: 206 ILLDIEY 212 >gi|294461715|gb|ADE76416.1| unknown [Picea sitchensis] Length = 448 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 95/314 (30%), Gaps = 70/314 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +EK++ E V AGR Sbjct: 126 FKIVLSYDGNLFDGWQKQPGMNTVQGLVEKSLGKFVDEKKAQELEAKKASVEAAVAVAGR 185 Query: 51 TDSGVHALRQVAHFDLVREW-----------------------------VPVILCKALNA 81 TD GV A +QV F R+ Sbjct: 186 TDKGVSAFQQVCSFYTWRKDTSLEDIESEINAAALGKLKVVSISEVSREFHPNFSAKWRR 245 Query: 82 YLKI---------------SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 YL I ++ +L + D+ + + I+ Sbjct: 246 YLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNISATGKHQAS 305 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH---------FDV 177 +++ ++ Q L R ++ + + + H + Sbjct: 306 VKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARAAVATLPYMG 365 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK----WTSTDLEKALQAQDRKECGPL 233 + + + +R V L + T +L K + A R+ P Sbjct: 366 QDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAAGATPDNLLKLMHATCRRASAPP 425 Query: 234 APPEGLYFDSVEYS 247 APPEGL + Y+ Sbjct: 426 APPEGLCLVDIGYT 439 >gi|296187338|ref|ZP_06855733.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] gi|296047860|gb|EFG87299.1| tRNA pseudouridine synthase A [Clostridium carboxidivorans P7] Length = 141 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 72/141 (51%) Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 ++YLY I + + A+ + ++L+ MR AA+ L G HDF +F S+ Sbjct: 1 MQNTKTYLYTINNNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNT 60 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 S +RTI++ + +I I V SFL +R VG+L VG G +D+EK L + Sbjct: 61 KSTVRTINYISITEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEK 120 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 R E GP+A +GL ++Y Sbjct: 121 KRAEAGPMAAAKGLCLKDIQY 141 >gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis G3] Length = 353 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 74/251 (29%), Gaps = 9/251 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G G+ Q + + +++ I +A+ GRTD+GV + Sbjct: 22 IALRIAYIGWNLKGFVLQNDTNETVEYHIFEALKRAKLIRNENECNYSLCGRTDAGVSGV 81 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 V + + + ++ + R + + Sbjct: 82 GNVISVRVRSVCPTGLGSIPREGAKVQKEEMNYAQILNGILPPSIRVTGVAYVKPDFNAR 141 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + K++D A L + +R I + Sbjct: 142 FDCATRGYRYFFHKFDKNIDLMK-EAAEHLLGEHDYRAFCKFSPDSTKHCVRKIYKCEFG 200 Query: 179 SFGN-LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAP 235 G + +V F+ QIR L VG+G + ++ L + P+A Sbjct: 201 DAGGGVWYFEIVGSGFIWHQIRCIASILFAVGNGFEKPSITKELLNTAKYPGRPNYPIAD 260 Query: 236 PEGLYFDSVEY 246 PE L F + Y Sbjct: 261 PEPLVFWNAGY 271 >gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii] Length = 363 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 88/308 (28%), Gaps = 65/308 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y+G GY G QR K +I+G +E+A+F + A RTD Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + +N++L + R Y Sbjct: 61 KGVSAAGQVVSG--RFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCDRRRYEY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCE-------------------------------- 140 + + + D Sbjct: 119 VLPVFALDPASHRVESPTIEAANPGDNPGEAITSEDVEEDTTSTTGTTTGRFTPTCTCTS 178 Query: 141 ------------NMRIAAQHLVGRHDFTTF----RSIHCQASSPIRTIDHFDVNSFGNLI 184 + L F + + S R I ++ + Sbjct: 179 SDLETGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQ 238 Query: 185 EIRVV-----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 + V +SF+ QIR +G V G T E+A + +D K P+AP GL Sbjct: 239 GCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFR-RDTKIGVPMAPELGL 297 Query: 240 YFDSVEYS 247 + D Y+ Sbjct: 298 FLDECLYT 305 >gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior] Length = 443 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 91/259 (35%), Gaps = 22/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q+ N +I+ + A+ + E H GRTD GV + Sbjct: 76 ILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAALLKSCCIESRESSNYHRCGRTDKGVSSF 135 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + V F ARF Sbjct: 136 SQVISLDVRSRLEPENQDNLSDELPYCKILNRLL--PANIRCIAWCPVSSIFSARFDCKF 193 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 RSY Y + A + D N+ + F+ A Sbjct: 194 RSYRYFFPRGNLDIEAMDKAAKYVIGDHDFRNICKMDVA----NGVINFKRTVMDARVNS 249 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDR 227 + + ++ ++ E+ + +++FL QIR +G L L+G K + K L + + Sbjct: 250 LNDQNVEKSTGYDMCELEITSQAFLWHQIRCLMGILLLIGQRKEEPEIILKLLDIETCPQ 309 Query: 228 KECGPLAPPEGLYFDSVEY 246 K +A L +Y Sbjct: 310 KPQYNMAHQVPLNLWYCDY 328 >gi|126302589|sp|Q9BZE2|PUS3_HUMAN RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens] gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens] Length = 481 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 22/265 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G GY G+ Q+N + +I+ + +A+ + + H GRTD GV A Sbjct: 65 VALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVREWVPVILCKALN---------------AYLKISDTISILNLSIVDKQFHA 103 QV DL ++ + N L I L+ + Sbjct: 125 GQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSF 184 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 YR +A L + + + + + Sbjct: 185 SARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSA 244 Query: 164 QASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL- 222 Q ++ L + V ++FL+ Q+R + L L+G G +++ L Sbjct: 245 QVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLN 304 Query: 223 -QAQDRKECGPLAPPEGLYFDSVEY 246 + +K +A L ++ Sbjct: 305 IEKNPQKPQYSMAVEFPLVLYDCKF 329 >gi|195490006|ref|XP_002092962.1| GE26463, isoform A [Drosophila yakuba] gi|194179063|gb|EDW92674.1| GE26463, isoform A [Drosophila yakuba] Length = 495 Score = 86.5 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 100/284 (35%), Gaps = 52/284 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MNRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALRVFHPINEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQGLPIRVLSSKLVSNSFHCRYH 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 AI R+YLYR + + ++ I + M Sbjct: 121 AIGRTYLYRFAVAKDPSLEDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVQAAARMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 A+SFL+ Q+R VG+L +G+G+ L + L + P Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNSWDP 284 >gi|94502328|ref|ZP_01308801.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451115|gb|EAT14067.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 192 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 4/189 (2%) Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + F + + N++L ++ I + HARF+AI R Y YRI Sbjct: 1 MFAHFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKK--IHARFTAISRVYEYRIS 58 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + P +L+ WL K + + A+ L D+++F C + I I + Sbjct: 59 LGKNPFSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKW 118 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + N++ + A +L +RS VG+L +G GK T D L A+DR AP + Sbjct: 119 HIKNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRN--IISAPAK 176 Query: 238 GLYFDSVEY 246 GL+ + Y Sbjct: 177 GLFLTKINY 185 >gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC 50983] Length = 387 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 89/277 (32%), Gaps = 50/277 (18%) Query: 3 RYCMIIEYNGSG--------------------YFG--WQRQK--NGSSIQGSIEKAIFLV 38 R+ M Y G+ Y G WQ Q+ ++++ + K + Sbjct: 34 RFVMKFAYVGTRQASFPSTTMALKVCVEAVLRYAGVAWQNQEAFGVNTVENELFKGLVKT 93 Query: 39 TGEIVVVHG----AGRTDSGVHALRQVAHFDL--VREWVPVILCKALNAYLKISDTISIL 92 + GRTD GVHA A L + + +N L + + Sbjct: 94 CLIESRMSCDFSRCGRTDKGVHARGNYATLRLRLKPDGTEFPYIQMINRVLPDDIRVLRI 153 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 D F ARFS R+Y Y + L + A + D N Sbjct: 154 CSVPSD-DFDARFSCKSRTYKYFFPSTGLDLEVMAEAAQRLVGQHDYRNF---------- 202 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 R Q ++ RTI F++ + + + +FL Q+R + L L+G G Sbjct: 203 -----CRMDVEQTTNFERTIYSFEICNGDVISHAVITGSAFLWHQVRCMMEVLMLIGKGL 257 Query: 213 WTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 ++ ++ P A GL +Y Sbjct: 258 EKPEVIDMLFDI-NKTPGKPSYDLADGAGLVLFDCKY 293 >gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 426 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 82/254 (32%), Gaps = 20/254 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + Y G Y G Q +++G + +A+ GRTD GV Sbjct: 74 IALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHLIKDPSTCSFSRCGRTDKGVS 133 Query: 57 ALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A+ QV ++ E P+ C LN L + + + + F ARFS +RR Y Y Sbjct: 134 AMGQVVSLNVRYSEERPIAYCDVLNRLLPEDIRVIAYSPNP-PEGFDARFSCVRRHYKYL 192 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + L+ R E+ + T + + Sbjct: 193 FLKQYPGGELDIERMSQAAALYLGEHDFRNFCKIDASKQITNYNRGILHSKIICVDPQK- 251 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--- 232 L + +FL Q+R + L LVG + + L ++ C P Sbjct: 252 ------QLYAFDLQGTAFLWHQVRCMMAILFLVGQHLEPVDIVSELLNV-EKNPCKPVYD 304 Query: 233 LAPPEGLYFDSVEY 246 +A L + Sbjct: 305 MASDLPLVLYDCVF 318 >gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 499 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 98/262 (37%), Gaps = 34/262 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ + GRTD GV Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 --------ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 R D + P+ C LN L TI I+ ++VD F ARFS + Sbjct: 120 ALGNALSLTARASCTADAEPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDAFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y R LA + AA L + + S+ Sbjct: 178 HRTYRYYFFHRGLNLAAMQ---------------EAAAFFLGTHNFRNFCKMDVVNVSNF 222 Query: 169 IRTIDHFDVNSFGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 +RT+ + L E+ A SFL+ QIR + L LVG G + ++ L+ Sbjct: 223 VRTVFSVGLYPSEELPELISYLEIRANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTLLEL 282 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 D K PLA L + Sbjct: 283 GDCKPTYPLADGTPLVLWDCGF 304 >gi|195012378|ref|XP_001983613.1| GH25313, isoform A [Drosophila grimshawi] gi|193897095|gb|EDV95961.1| GH25313, isoform A [Drosophila grimshawi] Length = 496 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 91/284 (32%), Gaps = 55/284 (19%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLV-TGEIVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTNFRGIQKTINKLEEARLDTNSIQGCLELALRVFRPKNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R L L I IL+ V FH R+ Sbjct: 61 DAGVHALHSTVHVDLERSDGKPYDTSTLTGVLNRTLDKHKLPIRILSSQRVVDTFHCRYH 120 Query: 107 AIRRSYLYR--------------------IITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 A R+YLYR + +++ A Sbjct: 121 ATGRTYLYRVAVAKSVSEASKGSSLKNKGYESFVPVEEIDRCYFLHCDNFDVERLHGAAR 180 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---------------------SFGNLIE 185 L T ++ S + + + Sbjct: 181 MFLGLHDFRTFMSVSRQKSPSRDHPMFTVRKIDEINIRPGQTLALGPNAKLATQTYDYWD 240 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 I + A+SFL+ Q+R VG+L + + + + + L + Sbjct: 241 IEIKAKSFLYKQVRRIVGTLLALANSRIDERCIYQMLTIPSKHN 284 >gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum] Length = 454 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 92/267 (34%), Gaps = 27/267 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q SI+ + + AI + + RTD Sbjct: 91 KKVAVLIGYCGTGYRGMQLNPPHKSIESDLFEAFVQAGAISKANSDDPKKSSLVRCARTD 150 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N+YL + I + + F + R Y Sbjct: 151 KGVHAAGNVISLKLIIEDP--DITEKINSYL--PEQIRVWGIVRTVGSFSSYHQCDSRRY 206 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQASSPI 169 Y + + K + + ++ + H+F F Sbjct: 207 EYLVPSHCFIPPHPKSYLAKKTYRISPKRLQRVREGFRSYEGTHNFHNFTIQKTFNDPSS 266 Query: 170 RTIDH------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + + + + +RV +SF+ QIR VG + +V +++A Sbjct: 267 KRFIKSFEVLDPIIINNTEWLSLRVHGQSFMMHQIRKMVGMVMMVVRTGCPLERIKEA-- 324 Query: 224 AQDRKECGPLAPPEGLYFDSVE---YS 247 R P AP GL +S Y+ Sbjct: 325 CGPRVVSIPKAPSLGLLLESPVFDAYN 351 >gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium parvum Iowa II] Length = 283 Score = 86.1 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 82/248 (33%), Gaps = 18/248 (7%) Query: 15 YFG--WQRQKNGSSIQGSIEKAIFLV-TGEIVV---VHGAGRTDSGVHALRQVAHFDLVR 68 + G +Q+ +I+G I KA+ + + + + GRTD GVH+ +L Sbjct: 4 FQGIAFQKDDKIPTIEGEIYKALLQLRLIKDIDSCDLVRCGRTDRGVHSAGNYISVNLRT 63 Query: 69 EWVP---VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + LN L I ++ V F ARF R Y Y + Sbjct: 64 RAKNLEPYNYMEMLNGVL--PWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLNHERTKI 121 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---FGN 182 K + F + + + IRTI FD+N Sbjct: 122 SKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVDENRT 181 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEG 238 + +FL Q+R +G L +G K+ + + L ++K +A G Sbjct: 182 FAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELSFQMATELG 241 Query: 239 LYFDSVEY 246 L + Sbjct: 242 LVLWDCVF 249 >gi|215737309|dbj|BAG96238.1| unnamed protein product [Oryza sativa Japonica Group] Length = 223 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 8/195 (4%) Query: 58 LRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 + VAHF + + A+N L + ++ + +FHAR S + Y Y+I Sbjct: 1 MHGVAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKP--EFHARTSTRSKIYHYKI 58 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDH 174 A+ L+ + MR AA+H VG HDFT+F + + + SPI+ I Sbjct: 59 YNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMR 118 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL- 233 FDV G ++++ + FL+ Q+R+ V L VG + K + A+DRKE + Sbjct: 119 FDVIEMGAILQLEIEGTGFLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVA 178 Query: 234 --APPEGLYFDSVEY 246 APP GLY SV Y Sbjct: 179 LSAPPHGLYLMSVNY 193 >gi|18399149|ref|NP_564438.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana] gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana] gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 446 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 81/270 (30%), Gaps = 44/270 (16%) Query: 2 IRY-CMIIEYNGSGYFGW----QRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRT 51 RY + I Y G ++G+ Q + SI+ + KA+ + GRT Sbjct: 89 KRYVALKIMYFGKRFYGFSAEAQMEP---SIESEVFKALERTRLLVGDKKDSCYSRCGRT 145 Query: 52 DSGVHALRQVAHFDL------------------VREWVPVILCKALNAYLKISDTISILN 93 D GV + QV L E + LN L D I ++ Sbjct: 146 DKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRAL--PDDIRVIG 203 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 S FHARFS R Y Y + L+ D N Sbjct: 204 WSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGEHDFRN-------FCKMD 256 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + + L + +FL QIR V L ++G G Sbjct: 257 VANVHCYTRRVTFFEVSPCQNS--HEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVE 314 Query: 214 TSTDLEKALQAQD--RKECGPLAPPEGLYF 241 + ++ L + RK LA L Sbjct: 315 SVDVIDTLLDTKKTPRKPQYLLASEIPLVL 344 >gi|152964686|ref|YP_001360470.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] gi|151359203|gb|ABS02206.1| tRNA-pseudouridine synthase I [Kineococcus radiotolerans SRS30216] Length = 252 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 94/231 (40%), Gaps = 12/231 (5%) Query: 28 QGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK-------A 78 QG + A+ V + AGRTD+GVHA QVAH DL R + + A Sbjct: 2 QGVLTAALGRVLRLDPAPRLTVAGRTDAGVHASGQVAHADLPRAVWEALPGRSDAPPAAA 61 Query: 79 LNAYLKI--SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA-PLALEKGRAWLIPK 135 L L + + F ARF A+RR Y YR+ A L + + Sbjct: 62 LVRRLAGVLPPDVRVHGARPAPPGFDARFGALRRRYAYRVCDDPAGVPPLRRFDVLHHRR 121 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLH 195 LD M +AA LVG +F F AS+ + + L+ V A +F H Sbjct: 122 PLDAAAMDLAAGSLVGLREFAAFCRPREGASTVRTLLAYSWRRDEDGLLVADVQADAFCH 181 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + +R+ VG++ VGDG+ A R + P+GL + V Y Sbjct: 182 SMVRALVGAVLAVGDGRRDVDWPRVVQDAAVRDPAVAVVGPQGLTLEEVVY 232 >gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] Length = 443 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 81/270 (30%), Gaps = 44/270 (16%) Query: 2 IRY-CMIIEYNGSGYFGW----QRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRT 51 RY + I Y G ++G+ Q + SI+ + KA+ + GRT Sbjct: 89 KRYVALKIMYFGKRFYGFSAEAQMEP---SIESEVFKALERTRLLVGDKKDSCYSRCGRT 145 Query: 52 DSGVHALRQVAHFDL------------------VREWVPVILCKALNAYLKISDTISILN 93 D GV + QV L E + LN L D I ++ Sbjct: 146 DKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRAL--PDDIRVIG 203 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 S FHARFS R Y Y + L+ D N Sbjct: 204 WSPAPVDFHARFSCYAREYKYFFWRQNLNLSAMDIAGKKFIGEHDFRN-------FCKMD 256 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + + L + +FL QIR V L ++G G Sbjct: 257 VANVHCYTRRVTFFEVSPCQNS--HEGDQLCTFTMRGSAFLWHQIRCMVAVLFMIGQGVE 314 Query: 214 TSTDLEKALQAQD--RKECGPLAPPEGLYF 241 + ++ L + RK LA L Sbjct: 315 SVDVIDTLLDTKKTPRKPQYLLASEIPLVL 344 >gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8] Length = 296 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 91/261 (34%), Gaps = 27/261 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAI--FLVTGEIVVVHGAG-----RT 51 + + Y G Y G QK+ +++G + A+ + + G G RT Sbjct: 46 RKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLVDPKGGLEGCGWERCGRT 105 Query: 52 DSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GV A QV + E +P +N +L D I IL S VD F +R+S Sbjct: 106 DRGVSAAGQVISLWVRSALSQEELLPHPFTYMINRHL--PDPIKILAWSPVDLSFSSRYS 163 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 R Y Y + + +P + + N+ + + Sbjct: 164 CTWRHYKYFFPPVGLDIPAMRAACAYLPGTHEFRNLCKIDPT---------KQLDQFRRD 214 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQ 225 +I H D ++ G + + SFL+ +R+ +G L +G T L + A Sbjct: 215 ILHASISHVDASNPGGMHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLLPSLMNVAP 274 Query: 226 DRKECGPLAPPEGLYFDSVEY 246 + +A L Y Sbjct: 275 GCRPEYMMADALPLTLWDCGY 295 >gi|194864517|ref|XP_001970978.1| GG25359, isoform B [Drosophila erecta] gi|190652761|gb|EDV50004.1| GG25359, isoform B [Drosophila erecta] Length = 288 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 100/281 (35%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +VD FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRYD 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 AI R+YLYR + + ++ I + M Sbjct: 121 AIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNS 281 >gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A [Callithrix jacchus] Length = 428 Score = 85.7 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 97/269 (36%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 85 RKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 143 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A QV + W+ + + +N +L I IL L V F+++ Sbjct: 144 ARTDKGVSAAGQVVSLKV---WLIDGILEKINRHL--PSHIRILGLKRVTGGFNSKNKCD 198 Query: 109 RRSYLYRIITR-QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + T A + + + + G H+F F S Sbjct: 199 ARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYEGTHNFHNFTSQKGPQEP 258 Query: 168 PIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R IRV +SF+ QIR VG + + G + LE++ Sbjct: 259 SARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESLLERS 318 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 K P AP GL + V Y+ Sbjct: 319 W--GTEKVDVPKAPGLGLVLERVHFEKYN 345 >gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404] gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404] Length = 437 Score = 85.7 bits (210), Expect = 6e-15, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 80/268 (29%), Gaps = 36/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ I K + V E V GRTD Sbjct: 73 MRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLAKVKLIKEPIEEVKFSRCGRTD 132 Query: 53 SGVHALRQVAHFDL------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GV A+ QV +L + V LNA L + + L + Sbjct: 133 KGVSAMNQVISIELRSNLSKEDQANPELDDKEVDYLSILNANLPSDIKVHSICLRP-PED 191 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS I R Y Y + + L A L D N F Sbjct: 192 FDARFSCISRHYRYIFKKQNLDIDLMNQGASLYQGIHDFRN-------------FCKLDG 238 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + ++ + + +FL Q+R V L +G G + + Sbjct: 239 SKQITNFQREIYSSKILHLHDDYYCFDLKGSAFLWHQVRCMVAILFTIGQGLEKPEIVTE 298 Query: 221 ALQAQDR--KECGPLAPPEGLYFDSVEY 246 + + K +A L E+ Sbjct: 299 LMDMEKYPTKPQYEMAHDIPLVLYDCEF 326 >gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi] Length = 423 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 91/270 (33%), Gaps = 27/270 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + + I Y G Y G+ Q++ +I+G + A+ E H GRTD GV Sbjct: 60 RKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRTCLIRSRETSNYHRCGRTDKGVS 119 Query: 57 ALRQVAHFDLV---------REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A RQV +L ++ N + S + A Sbjct: 120 AFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEEIDYCKILNSNLPPDIQVIAWA 179 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 + + R E + + + D ++ A L+G HDF F + Sbjct: 180 PLTNRDFSA--RFDCKIREYKYIFPLGAARDLSRIQEAGAKLLGSHDFRNFCKMDVSNGV 237 Query: 168 PIRTIDHFDV---------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 +V +L+E+++V +FL QIR V L +G G + + Sbjct: 238 LTYIRRMLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVTVLFHIGQGLEEPSLI 297 Query: 219 EKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 ++ L + R+ LA L Y Sbjct: 298 DELLDVEKHPRRPQYGLASEIPLNLFDCSY 327 >gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS] gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS] Length = 366 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 86/273 (31%), Gaps = 49/273 (17%) Query: 4 YCMIIEYNGSGYFGWQRQK-------------NGSSIQGSIEKAIFLV----TGEIVVVH 46 + + Y G Y G Q N +I+ + KA+F + + Sbjct: 38 IAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRLIQNTKDCKYN 97 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPV-----------ILCKALNAYLKISDTISILNLS 95 GRTD GV A QV + C+ LN L Sbjct: 98 RCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPTDIRCLGWCGV 157 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 D + Y + P S D M+ AAQ +G HDF Sbjct: 158 PDDFNSRFSCQSRTYHYYFD------------------PSSYDVPKMKEAAQLFLGEHDF 199 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 T F S +R ++ F+V L V +F+ Q+R VG+L +G G Sbjct: 200 TNFCKKDPAVSHCVRRVNSFEVEETDGLSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANP 258 Query: 216 TDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 +++ L + + AP L +Y Sbjct: 259 ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKY 291 >gi|149634330|ref|XP_001510884.1| PREDICTED: similar to Pseudouridine synthase 1 [Ornithorhynchus anatinus] Length = 469 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 31/269 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY+G QR +I+ + A+ +G I HG Sbjct: 100 RKIVLLMAYSGKGYYGMQRHVGSSQFKTIEDDLVSALVQ-SGCIPENHGDDMKKMSFQRC 158 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD GV A Q+ + W+ + + +N++L I IL L V F+++ + Sbjct: 159 ARTDKGVSAAGQIVSLKV---WLIDNILEKINSHL--PSQIRILGLKRVTGGFNSKNNCT 213 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCE-------NMRIAAQHLVGRHDFTTFRSI 161 R+Y Y + T + S + H + Sbjct: 214 ARTYFYMLPTLAFAHKDHDPQDETYRLSPEVLERVNRLLACYKGTHHFHNFTSQKGPKDA 273 Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + V I+V +SF+ QIR +G + + G + +E++ Sbjct: 274 SGMRYIMEMYCEEPFVREGMEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYADQSVMERS 333 Query: 222 LQAQDRKECGPLAPPEGLYFDSVE---YS 247 + K P AP GL + V Y+ Sbjct: 334 W--GEEKVDIPKAPGLGLVLERVHFESYN 360 >gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator] Length = 368 Score = 85.3 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 90/259 (34%), Gaps = 23/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + A+ + E H GRTD GV + Sbjct: 19 ILLKLYYLGWNYDGFTVQEDSNATIEHHLFAALTKSCCIESRETSNYHRCGRTDKGVSSF 78 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ + P CK LN L I + + F ARF Sbjct: 79 CQVISLDIRSKLEPEQQSNLSKELPYCKILNKLL--PTNIRCIAWCPISSDFSARFDCKY 136 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y Y + + D N+ + T + Sbjct: 137 RKYKYFFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDV-----ANGVTNFKRKVIDAKIS 191 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDR 227 D ++ ++ E+ + +++FL QIR +G L LVG + + K L + + Sbjct: 192 MNNQAVDKSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEIISKLLDIETCPQ 251 Query: 228 KECGPLAPPEGLYFDSVEY 246 K +A L +Y Sbjct: 252 KPQYNMAHEVPLNLWYSDY 270 >gi|225427081|ref|XP_002275354.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 448 Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 90/314 (28%), Gaps = 70/314 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGAGR 50 + +++ Y+G+ + GWQ+Q +++QG +E ++ E +V AGR Sbjct: 125 FKIVLSYHGASFDGWQKQPGLNTVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGR 184 Query: 51 TDSGVH-----ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 TD GV D+ + + + A L++ + + + R Sbjct: 185 TDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRH 244 Query: 106 SAIRR------------------------------------------SYLYRIITRQAPL 123 + I Sbjct: 245 YFYIFPLNDGDDGEQISENEMDIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEF 304 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--------- 174 K + +D ++ + L + ++ + H Sbjct: 305 ESRKKPSTFSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ 364 Query: 175 -FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 D ++ I +VA FL +R V + L K + A R+ P Sbjct: 365 FSDDGEGTKVMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPP 424 Query: 234 APPEGLYFDSVEYS 247 APP+GL V ++ Sbjct: 425 APPDGLCLIDVGFT 438 >gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760] gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760] Length = 366 Score = 85.3 bits (209), Expect = 7e-15, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 86/273 (31%), Gaps = 49/273 (17%) Query: 4 YCMIIEYNGSGYFGWQRQK-------------NGSSIQGSIEKAIFLV----TGEIVVVH 46 + + Y G Y G Q N +I+ + KA+F + + Sbjct: 38 IAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEYQLFKALFKTRLIQNTKDCKYN 97 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPV-----------ILCKALNAYLKISDTISILNLS 95 GRTD GV A QV + C+ LN L I Sbjct: 98 RCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPIDIRCLGWCGV 157 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 D + Y + P S D M+ AAQ +G HDF Sbjct: 158 PDDFNSRFSCQSRTYHYYFD------------------PSSYDVPKMKEAAQLFLGEHDF 199 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 T F IR ++ F+V L V +F+ Q+R VG+L +G G Sbjct: 200 TNFCKKDPAVPHCIRRVNSFEVEEINGLSRFVVCGTAFVWHQVRYMVGALFAIGQG-ANP 258 Query: 216 TDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 +++ L + + AP L +Y Sbjct: 259 ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKY 291 >gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae] Length = 352 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 92/264 (34%), Gaps = 25/264 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y+G GY G QR + +I+ + A + + + RTD Sbjct: 42 RKVACLLAYSGVGYMGMQRNQGFKTIEEDLLAAFYKAGAIPKDHMDCMQKMHFQRCARTD 101 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A Q+ + ++ + +N L S I ++ + F ++ + R+Y Sbjct: 102 KGVSAAGQIVSLKM---YMIEDAVQKINDCLAES--IRLIGIKRTTNGFDSKNACDARTY 156 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 +Y + T E+ E + G H+F F S + Sbjct: 157 MYVLPTYSFAPTKEETEQDFRATDDVMEKVNDVLSAYKGTHNFHNFTSGKKFKDPSAKRY 216 Query: 173 DHFDVN------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 I + +SF+ QIR +G + + G + LE+A Q Sbjct: 217 IIESKCLDTFVRDDIEWTVISIKGQSFMIHQIRKMIGMMLAIVRGLAPRSMLERAWQEG- 275 Query: 227 RKECGPLAPPEGLYFDSV---EYS 247 K P AP GL D V Y+ Sbjct: 276 -KCDIPKAPGLGLVLDKVHFDHYN 298 >gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus] Length = 345 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 88/259 (33%), Gaps = 23/259 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ + +I+ + A+ + E H GRTD GV + Sbjct: 19 ILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLKSCCIESRESANYHRCGRTDKGVSSF 78 Query: 59 RQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + V F ARF Sbjct: 79 SQVISLDIRSRLEPENQHNLSEELPYCKILNRLL--PTNIRCIAWCPVSPNFSARFDCKY 136 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R+Y Y + D N+ + + Sbjct: 137 RTYKYFFPKSNLDIDAMDKSVKYAIGDHDFRNICKMDV-----ANGVINFKRTVIDAKVS 191 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDR 227 + + + + N+ E+ + +++FL QIR +G L LVG K + K L + + Sbjct: 192 MSNQNVEKITGYNMCELEITSQAFLWHQIRCLMGILLLVGQRKEEPEIILKLLNIETCPQ 251 Query: 228 KECGPLAPPEGLYFDSVEY 246 K +A L +Y Sbjct: 252 KPQYNMAHEVPLNLWYCDY 270 >gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus leucogenys] Length = 421 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 93/268 (34%), Gaps = 28/268 (10%) Query: 2 IRYCMIIEYNGSGYFGWQ-RQKN---GSSIQGSIEKAIFLVTGEIVVVHG---------- 47 + +++ Y+G GY G Q R +I+ + A+ +G I HG Sbjct: 77 RKIVLLMAYSGKGYHGMQWRNLGSLQAQTIEDDLVSALVR-SGCIPENHGEDMRKMSFQR 135 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 RTD GV A QV + W+ + + +N++L I L R A Sbjct: 136 CARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDA 192 Query: 108 IRRSY--LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 Y + ++ + + H+FT+ + + Sbjct: 193 RTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQEPS 252 Query: 166 SSPIRTIDHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + IRV +SF+ QIR VG + + G + LE++ Sbjct: 253 ARRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW 312 Query: 223 QAQDRKECGPLAPPEGLYFDSVE---YS 247 ++ K P AP GL + V Y+ Sbjct: 313 GSE--KVDVPKAPGLGLVLERVHFEKYN 338 >gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum] Length = 334 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 90/260 (34%), Gaps = 22/260 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F + V A +TD V Sbjct: 50 AILMMYSGWGYYGMQRGPIYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASKTDKYV 109 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH--ARFSAIRRSYL 113 AL QV L + L LN L I + + Sbjct: 110 SALGQVCSLKL---YDDADLLNKLNTALPQDIRILDIIRVTRSFSSYNSCTHRVYDYLLP 166 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH-CQASSPIRTI 172 ++ + + + + G H+F F S S R I Sbjct: 167 TFALSSGNLSLSDSTCWTYRVTAEKITKLNNLLERYKGTHNFYNFTSGRLPTDKSCYRHI 226 Query: 173 DHFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + IR++ +SF+ Q+R +G + + G T D+ + ++R Sbjct: 227 KSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMIGLVLGILRGYAT-EDVFDIVFCKER 285 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P AP GL + V++S Sbjct: 286 -VDIPKAPGLGLMLNQVDFS 304 >gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314] Length = 489 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 74/259 (28%), Gaps = 18/259 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 129 MRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTD 188 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV ++ L+I + D + H+ Sbjct: 189 KGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHSI-----CLR 243 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPI 169 + R + LD E M A+ G HDF F + Sbjct: 244 PPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITNFVR 303 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--R 227 ++ + + +FL Q+R V L +G + + + + Sbjct: 304 EIYQSQIIHLHQDYYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDLMDTNKFPT 363 Query: 228 KECGPLAPPEGLYFDSVEY 246 K +A L E+ Sbjct: 364 KPQYEMAHDIPLVLYDCEF 382 >gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36] gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36] Length = 444 Score = 84.9 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 78/268 (29%), Gaps = 36/268 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTD 52 M Y G Y G Q +++ KA+ V E V GRTD Sbjct: 86 MRFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEPIEEVKFSRCGRTD 145 Query: 53 SGVHALRQVAHFDL------------VREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 GV A+ QV D+ + + LNA L + + L + Sbjct: 146 KGVSAMNQVISIDVRSNLSLENQANPEFDDQEIDYISVLNANLPSDIKVHSICLRPPP-E 204 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 F ARFS + Y Y + + L A L D N F Sbjct: 205 FDARFSCLSCHYRYIFRKQDLNIDLMNQGANLYQGIHDFRN-------------FCKLDG 251 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + ++ + + +FL Q+R V L +G + + + Sbjct: 252 SKQITNFVREIYQAQILHLHQDYYCFDLKGSAFLWHQVRCMVAILFSIGQELESPSIITD 311 Query: 221 ALQAQDR--KECGPLAPPEGLYFDSVEY 246 + K +A L E+ Sbjct: 312 LMDMTKYPTKPQYEMAHDIPLVLYDCEF 339 >gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 346 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 87/256 (33%), Gaps = 24/256 (9%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGE-------IVVVHGAGRTDSGVH 56 + Y G+GY G Q + +I + + + + E + + A RTD+GVH Sbjct: 35 IYFRYIGTGYHGLQYNEKVRTIDSDLFEGLEKSGILPEGSYKRRGKIAWNEASRTDAGVH 94 Query: 57 ALRQVAHF------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 A Q+ F D+ +P ++ K L + I + S + A Sbjct: 95 ACGQLICFKSYEICDMECSQIPELINKNLPSDSTIKIMSCLCTNSPFPVKDFATHRKYNY 154 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + + P L+ R + P + N + T Q Sbjct: 155 LLPLHVFSSTDPDHLDYLRQKICPLFIGQHN-------FHNYTNGTPKTYKGAQRFITDF 207 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 T + + + SF+ QIR + + + T ++ ++L + Sbjct: 208 TFGDVFTINGEEYVLFYIRGISFMLNQIRKMISMVTAASFNQVTPEEVSRSLT--EETCR 265 Query: 231 GPLAPPEGLYFDSVEY 246 L P +GL+ D +EY Sbjct: 266 IQLLPGDGLFLDQIEY 281 >gi|270605639|ref|ZP_06221621.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270318160|gb|EFA29385.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 131 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 61/105 (58%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIY 105 >gi|38639411|gb|AAR25833.1| tRNA pseudouridine synthase A [Buchnera aphidicola (Tetraneura caerulescens)] Length = 107 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 51/92 (55%) Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 F+ FR+ +CQ+ + R I D+ + I + A +FL+ +R+ VGSL VG + Sbjct: 1 FSGFRAKNCQSKTAFRKIIRLDIFRKNFFVIIEIEANAFLYKMVRNIVGSLIEVGLKRKN 60 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ L++++RK GP A GLY V+Y Sbjct: 61 VSWIDTILKSKNRKLSGPTASANGLYLVYVDY 92 >gi|255566350|ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis] gi|223536579|gb|EEF38224.1| pseudouridylate synthase, putative [Ricinus communis] Length = 443 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 93/314 (29%), Gaps = 68/314 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-------------VVVHGA 48 + + + + Y+G + GWQ+Q +++QG +EK++ E A Sbjct: 120 VNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVA 179 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVI-LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 GRTD GV ALRQV F R+ V + A+N+ + ++ + Sbjct: 180 GRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFHPNFSAKW 239 Query: 108 IRRSYLY---------------RIITRQAPLALEKGRAWL-------------------- 132 R Y++ + ++ ++ R Sbjct: 240 RRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDEL 299 Query: 133 ---------IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 ++ ++ + L + ++ I H Sbjct: 300 EGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLP 359 Query: 184 IEIRVVARSFL------HTQIRSFVGSLKLVG----DGKWTSTDLEKALQAQDRKECGPL 233 R + + +R V L L K + A R+ P Sbjct: 360 CPDHGEGRKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPP 419 Query: 234 APPEGLYFDSVEYS 247 APP+GL V Y+ Sbjct: 420 APPDGLCLFDVGYT 433 >gi|302023348|ref|ZP_07248559.1| tRNA pseudouridine synthase A [Streptococcus suis 05HAS68] Length = 124 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 128 GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID--HFDVNSFGNLIE 185 A P LD + A Q LVG HDFT F + +RTI + + + Sbjct: 2 HYATFYPYDLDLSLIEEAIQDLVGTHDFTGFTASGTSVEDKVRTIKAASMEYDQRRQFLI 61 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 FL+ Q+R+ VG+L +G+G+ +++ L +DR GP A GLY + Sbjct: 62 FTFSGNGFLYKQVRNMVGTLLKIGNGRMPVGQIKRILAEKDRSLAGPTAAGNGLYLKEII 121 Query: 246 Y 246 Y Sbjct: 122 Y 122 >gi|150400022|ref|YP_001323789.1| tRNA pseudouridine synthase A [Methanococcus vannielii SB] gi|150012725|gb|ABR55177.1| tRNA pseudouridine synthase [Methanococcus vannielii SB] Length = 265 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 32/247 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHALRQ 60 Y I Y+G Y +Q Q + +++ I + + + + GRTD GV AL Sbjct: 2 YIFKIAYDG-RYS-FQSQPHRNTVCDKITDTLLECGYLKEGEIPISYGGRTDLGVSALGN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +++ + V + L+ + + L K H R+ Sbjct: 60 YIVYNITEKPVLSRIYSKLHKHGIWILGFNELKELPDVKYRHYRY--------------- 104 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 L D E M+ A++ L+G H F + + SPIRTI + + Sbjct: 105 ----------ILPNTGQDIELMKKASEKLIGTHSFHNLSKRDKTKNRSPIRTIYNIKIAK 154 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS-TDLEKALQAQDRKECGPLAPPEG 238 I I + +SFL +R V L VG K+ L +D + A EG Sbjct: 155 NEYFITIEIFGKSFLWNMVRKIVRLLSNVGLSKYKEFEKFIDDLLDRDVRMGVQPASAEG 214 Query: 239 LYFDSVE 245 L V+ Sbjct: 215 LILVDVK 221 >gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC 50506] Length = 317 Score = 84.2 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 33/223 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ--- 60 + I Y+G Y G Q ++ G +E A+ TG + AGRTD+GV A+ Sbjct: 37 VALRISYDGRRYSGMAPQSGKETVGGHLENAL-KFTGLGEKLVYAGRTDAGVSAISMVVS 95 Query: 61 -----------VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 ++ ++ LN++L I ++ + V F ARF+ I+ Sbjct: 96 GVFISRIEMPNRSYVVTESDYKEYKYDMILNSHL--PSDIRVIGWAPVPDTFSARFTCIQ 153 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 R Y Y + LD + MR A + +F F + + Sbjct: 154 RQYRYYF----------------HKEDLDADRMREMASRIKKMENFYYFSKHSDKNARYE 197 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 R +D + G++ + + AR+FLH +R V +++ G G+ Sbjct: 198 RKLDECRIVDEGDVYYLDIRARAFLHNMVRKIVWAIQKAGKGE 240 >gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens] gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens] Length = 338 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 88/261 (33%), Gaps = 27/261 (10%) Query: 8 IEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSG 54 + Y+G GY G QR +I+ + A+ +G I HG RTD G Sbjct: 1 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRCARTDKG 59 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY-- 112 V A QV + W+ + + +N++L I L R A Y Sbjct: 60 VSAAGQVVSLKV---WLIDDILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLL 116 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + ++ + + H+FT+ + ++ Sbjct: 117 PTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILE 176 Query: 173 DHFDVNSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 + + IRV +SF+ QIR VG + + G + LE++ K Sbjct: 177 MYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GTEKV 234 Query: 230 CGPLAPPEGLYFDSVE---YS 247 P AP GL + V Y+ Sbjct: 235 DVPKAPGLGLVLERVHFEKYN 255 >gi|327311135|ref|YP_004338032.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] gi|326947614|gb|AEA12720.1| Pseudouridylate synthase [Thermoproteus uzoniensis 768-20] Length = 250 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 37/243 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 ++ Y+GS ++G+ + S++ ++ +A+ + G RTD GV AL V Sbjct: 2 IAYLVAYDGSLFYGFTG--HERSVEPALARALGPLLGR------GSRTDPGVSALGNVVV 53 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 ++ +NA L + + + V + F+ R + R Sbjct: 54 ARSLKPLGQ------INAEL--PRGVWVWGYAEVPEGFNPRRARAR-------------- 91 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + + D +R AA VG HD+ R+ + TI +V G Sbjct: 92 ---TYVYFAPYRGEDLGLVREAASLFVGTHDY---RNFAKGVRDAVTTIYSIEVEDRGAY 145 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 IEI + F + +R V +L VG G D+ + L++ P AP EGL S Sbjct: 146 IEIAFRGKGFRNKMLRKIVWALLAVGRGVLGIDDVRRLLESGGGGP-VPSAPAEGLVLLS 204 Query: 244 VEY 246 ++Y Sbjct: 205 IDY 207 >gi|219888663|gb|ACL54706.1| unknown [Zea mays] Length = 271 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 82/195 (42%), Gaps = 6/195 (3%) Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 QVAHF + + + L + + +FHAR S + Y Y+I Sbjct: 48 CCFQVAHFTTPFSYSCLSSIHSAMNGLPPPEIRVREISAARP-EFHARSSTKSKVYRYKI 106 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDH 174 A+ L+ M+ AA + VG HDFT+F + + P + I Sbjct: 107 YNEAIMDPFHNHYAYHSAYKLNPHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITR 166 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL- 233 FDV G ++++ V FL+ Q+R+ V L VG + + A+DRKE + Sbjct: 167 FDVTEMGAVLQLEVEGTGFLYRQVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVA 226 Query: 234 --APPEGLYFDSVEY 246 APP GLY SV Y Sbjct: 227 LSAPPHGLYLMSVNY 241 >gi|194864515|ref|XP_001970977.1| GG25359, isoform A [Drosophila erecta] gi|190652760|gb|EDV50003.1| GG25359, isoform A [Drosophila erecta] Length = 499 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 100/281 (35%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +S+QG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSVQGCLELALQVFHPTNEIQTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +VD FH R+ Sbjct: 61 DAGVHALHSTVQVDLERPNGQPYDTTTLTGVLNRTLNKQRLPIRVLSSQLVDNSFHCRYD 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 AI R+YLYR + + ++ I + M Sbjct: 121 AIGRTYLYRFAVAKDSSLGDCNLRNKAYETFIPVEEIDRCYFLQSSSFDINRVKAAARMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSSAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 KAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTVPSKNS 281 >gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818] Length = 460 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 84/275 (30%), Gaps = 33/275 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV-TGEIVVV---HGAGRTDSGVH 56 + + + Y G Y G Q + +I+ + +A+ E + GRTD GV Sbjct: 61 RKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEKSKLVEDIKTADYSRCGRTDKGVS 120 Query: 57 ALRQVAHFDLVREWVPVI-----------------------LCKALNAYLKISDTISILN 93 A QV + K LN L I +++ Sbjct: 121 AYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDELDYTKILNGLL--PPEIRVVD 178 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 VD F ARFS R Y Y A + + D N A + Sbjct: 179 WGAVDTDFSARFSCNARHYKYFFHRANMDTAAMQAACDHLVGEHDFRNFCKADVAGGVTN 238 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 T + + H F +L E ++ +FL Q+R + L +VG G Sbjct: 239 FVRTIKEARVCPAEIGDASVHSSDGDF-DLWEFNIIGHAFLWHQVRCMMAVLFMVGRGDE 297 Query: 214 TSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 + L + K +A L ++ Sbjct: 298 QPGMVRHLLNIDECTHKPQYVMASELPLVLYDCKF 332 >gi|294790441|ref|ZP_06755599.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] gi|294458338|gb|EFG26691.1| tRNA pseudouridine synthase A [Scardovia inopinata F0304] Length = 382 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 39/161 (24%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG--------------------- 40 +R + Y+G+ + GW RQ + ++QG +E AI V Sbjct: 1 MRLKIDCSYDGTDFHGWARQPDLRTVQGELEAAIAKVLHLWQPAGQTADYPSAFAKALAN 60 Query: 41 --EIVV----VHGAGRTDSGVHALRQVAHFDLVR----------EWVPVILCKALNAYLK 84 V + AGRTD+GVHA QV H DL + + AL L+ Sbjct: 61 QSAPVSFWPHLVVAGRTDTGVHARGQVCHLDLDQDLLGRAQGHLDPARFKPWDALTYRLR 120 Query: 85 I--SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 D +S+ +S + F ARFSA R Y+YR+ Q Sbjct: 121 RILPDDLSVSAISPAPEGFDARFSASDRVYVYRVADDQTSY 161 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 L+E ++A +F H +RS V + VG GK + + R+ AP GL + Sbjct: 299 LLEFTIIADAFAHNMVRSLVNASLQVGMGKKSLEWFLDKIHNPQREGASGPAPACGLTLE 358 Query: 243 SVEY 246 V Y Sbjct: 359 KVNY 362 >gi|163783824|ref|ZP_02178806.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880914|gb|EDP74436.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 64 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G+ Y GWQRQ +IQ IE + ++ V ++ +GRTD+GVHAL QVA Sbjct: 4 NYKLTISYLGTNYHGWQRQPKHITIQQVIEDNLKVLVKHPVKLYASGRTDAGVHALGQVA 63 Query: 63 H 63 + Sbjct: 64 N 64 >gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 560 Score = 83.8 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 90/310 (29%), Gaps = 73/310 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G I A+ V V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEIFAALVKAGAVSADNAVDARKVDIARAART 182 Query: 52 DSGVHALRQVAHFDL----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 D+GVHA V + + + +N +L D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKNVAEYVNTFL--PDQIRMWGWVRTVKSFNARTAA 240 Query: 108 IRRSYLYRIITRQAPLALEKG--------------------------------------- 128 R Y Y + + + Sbjct: 241 DSRIYEYLLPSYCLIPPHKDDPLAKHLDISSPDWREIVGEYPCSFADARLPMPTSDEGEV 300 Query: 129 -------RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---------TI 172 +D + + F + R + Sbjct: 301 DPKVRGEYERKRKWRVDERTLNRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIQLEV 360 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V I +++ +SF+ QIR + L + L + +K P Sbjct: 361 KEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETF--GPKKIHIP 418 Query: 233 LAPPEGLYFD 242 APP GL + Sbjct: 419 KAPPLGLLLE 428 >gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans] gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans] Length = 443 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 76/232 (32%), Gaps = 17/232 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 89 VAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTDKG 148 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV + N +I + L D + A Sbjct: 149 VSAMNQVISLHVRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAV-----CLRPP 203 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPIRT 171 + R LD + M AA+ G HDF F + Sbjct: 204 TNFDARFSCQYRHYRYLFHKDGLDIKKMEEAARMYEGEHDFRNFCKLDGSKQINNYKRNI 263 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ ++ + ++ +FL Q+R + +L L+G G +T L+ + Sbjct: 264 ERSRIISLSEDIYCLDLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKDLMD 315 >gi|167537271|ref|XP_001750305.1| hypothetical protein [Monosiga brevicollis MX1] gi|163771295|gb|EDQ84964.1| predicted protein [Monosiga brevicollis MX1] Length = 1025 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 35/253 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + + Y G Y G Q + +++ + A+ GRTD GV Sbjct: 33 RKVALRFAYLGEHYRGLAFQDHQADTVEEHLFNALQRACLIDDRTSCEFSRCGRTDKGVS 92 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL QVA + K L + + + + + R + I Sbjct: 93 ALSQVASLYVRTNLEECTSLKPRTEPLPPKKAEAQREKARQEIDY---IHVLNRLLPHDI 149 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 A K+ + + + + Sbjct: 150 RVYAWAPVPADFDARSCKKAHNFLRGNMTSATFARNTPYYNLCC---------------- 193 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLA 234 I V +FL QIR V L L+G + + + + L + K +A Sbjct: 194 ---------ITVHGSAFLWHQIRCMVSVLFLIGQQLESPSIVSRLLDVVSLPGKPQYDMA 244 Query: 235 PPEGLYFDSVEYS 247 P L EY+ Sbjct: 245 PDLPLVLWDCEYT 257 >gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster] gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster] gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster] gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct] gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct] Length = 499 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 85/253 (33%), Gaps = 23/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 219 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R+Y Y +A + L+ + D N R++ Sbjct: 220 CVSRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDV---HNGVTNYMRNLQSARV 276 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +H + +EI A +FL QIR + L LVG K + L + Sbjct: 277 EACDQTNHTNSGYDMYYLEI--QANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVES 334 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 335 NPCKPQYTPAIGL 347 >gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium dendrobatidis JAM81] Length = 289 Score = 83.4 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 88/270 (32%), Gaps = 41/270 (15%) Query: 4 YCMIIEYNGSGYFGWQR--QKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVH 56 + I Y G Y+G+ + +++ I KA+ + G GRTD GV Sbjct: 26 IALKISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRCGRTDKGVS 85 Query: 57 ALRQVAHFDLVR---------EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A QV + +W + LN L D I +L S VD F ARF+ Sbjct: 86 AFDQVVSVWVRTARPGDRDTLDWDQLPYLNILNRLL--PDDIRVLAWSPVDPIFDARFTC 143 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R Y Y L + A + DC ++ + + Sbjct: 144 SHRKYNYFFDGAGLDLIAMRDAASRFVGTHDCRHICKID------------PTKAAREGF 191 Query: 168 PIRTIDHFDVNS------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 +RTI D+ + V R+FL Q+R+ + L L+G G + Sbjct: 192 FVRTIMECDIVPVPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRGMEMPDMISDM 251 Query: 222 LQAQDRKECG-----PLAPPEGLYFDSVEY 246 L +AP L Y Sbjct: 252 LDLTKHAPAAGRPFYEMAPDGPLVLVECAY 281 >gi|156537085|ref|XP_001602396.1| PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] Length = 421 Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 20/237 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL----VTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ S+I+ + A+ + E H GRTD GV A Sbjct: 73 IFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAALTKSCLIESRETSNYHRCGRTDKGVSAF 132 Query: 59 RQVAHFDLVREWVPV---------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 QV D+ P CK LN L I + S + ARF Sbjct: 133 SQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLL--PKNIRCFSWSPAHPEMSARFDCKF 190 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI 169 RSY Y + A L S D N+ FR+I + I Sbjct: 191 RSYKYFFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDV---ANGVVNFFRNIVNAQVTCI 247 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + + + S ++ E+ + + +FL QIR +G L LVG + + L + Sbjct: 248 K-REDPEKISGYDMCELSIKSNAFLWHQIRCIMGILLLVGREQEKPEVITDLLDVEK 303 >gi|260797314|ref|XP_002593648.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] gi|229278875|gb|EEN49659.1| hypothetical protein BRAFLDRAFT_252211 [Branchiostoma floridae] Length = 259 Score = 83.0 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 111/254 (43%), Gaps = 37/254 (14%) Query: 31 IEKAIFLV-TGEIVVVHGAGRTDSGVHALRQVAHFDL-----VREWVPVILCKALNA--Y 82 ++ A + E +H + RTDSGVHAL AH DL + P + A+N Sbjct: 1 LQDAFSHLKLAEPPNIHVSSRTDSGVHALCNTAHADLIYGDDKEPFDPDSIVHAVNRSIL 60 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL---EKGRAWLIPKSLDC 139 I ++N V F +R A+ R+YLYR+++ L E R+W I + LD Sbjct: 61 HMGRTDIRLMNCRPVSPTFSSRHQALGRTYLYRVVSGCYHSRLPIPEVNRSWGIKERLDI 120 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQ---------------ASSPIRTIDHFDVNSFGNLI 184 E M+ AA+H +G HDFTTFRS + + +H ++ Sbjct: 121 EAMQEAAKHFLGTHDFTTFRSKTPETWTKDPVKTMKVVEVRRASCFLKEHDPFCRDLEVL 180 Query: 185 EIRVVARSFLHTQ--------IRSFVGSLKLVGDGKWTSTDLEKALQAQD---RKECGPL 233 E+ +RSFL+ Q +R G L +G GK D+ L + + + Sbjct: 181 ELIFKSRSFLYRQAIVLSLLQVRRMTGLLVAIGRGKLQPEDVCTLLAVRKIAAYPKAAQV 240 Query: 234 APPEGLYFDSVEYS 247 AP GLY +VEY+ Sbjct: 241 APAHGLYLCNVEYN 254 >gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis] gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis] Length = 248 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 8/232 (3%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVTGEIVVVH----GAGRTDSGVHA 57 + M Y G+GY G Q + +++G + +A+ L V++ GRTD VHA Sbjct: 12 KLLMDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANVASDVLNNGYERCGRTDRDVHA 71 Query: 58 LRQVAHF--DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 L A F D P + I+ +I + Sbjct: 72 LHNYASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPRGIRVNWVKHVPDD 131 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 +R+ + + L + ++ + TI F Sbjct: 132 FSSRRNCTFRVYKYFFQLGSMDLSLIQDACRHFLGQHNFNQFCKTDNRNPKDSHGTIYSF 191 Query: 176 DVNSFGNL-IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 +V + L + R+FL Q+R +G L VG+G ++ L+ + Sbjct: 192 EVERYNELLCVATICGRAFLWHQVRCMMGVLFKVGEGIIPGLKVKWLLEHPE 243 >gi|163784111|ref|ZP_02179057.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] gi|159880615|gb|EDP74173.1| tRNA pseudouridine synthase A [Hydrogenivirga sp. 128-5-R1-1] Length = 175 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 5/170 (2%) Query: 77 KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 + LNA L ISI V FHARFSA ++Y+Y++ T+ R W I + Sbjct: 4 RYLNAVL--PRDISIKECKQVPLSFHARFSAKGKTYIYKVYTQP--DPFMYQRGWYISQK 59 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 LD EN+ A Q + + + + F G L++ + A FL Sbjct: 60 LDLENIAEAVQLIKNTENLISMSKKGDYLREDVEIR-EFRFKYDGFLLKFEISASHFLRY 118 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R V + VG G+ T ++ L ++D +APPEGLY V Y Sbjct: 119 MVRKIVAHVVHVGTGRITIDTFKQILDSKDPARALFIAPPEGLYLKEVYY 168 >gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans] gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans] Length = 498 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 88/253 (34%), Gaps = 24/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 219 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + RSY Y +A + L+ + D N H + +S +A Sbjct: 220 CVSRSYRYYFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEAC 279 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T +D+ + + A +FL QIR + L LVG K + L + Sbjct: 280 DENHTNSGYDMY------YLEIQANAFLWHQIRCIMAVLLLVGQKKEKPAVISDLLDVES 333 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 334 NPCKPQYTPAIGL 346 >gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba] gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba] Length = 497 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 88/253 (34%), Gaps = 24/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 100 VLLKITYFGWDYQGFACQEDSNDTIEANLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + ARF Sbjct: 160 CQVISIDLRSKHPPESQLDPTAISTEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 218 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + RSY Y +A L+ + D N H + +S +A Sbjct: 219 CVSRSYRYYFPKGDLDIAAMSKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEAC 278 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T +D+ + + A +FL QIR + L LVG K + K L + Sbjct: 279 DENHTNSGYDMY------YLEIQANAFLWHQIRCIMAVLLLVGQKKENPAVISKLLDVES 332 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 333 NPCKPQYTPAIGL 345 >gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST] gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST] Length = 485 Score = 83.0 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 101/263 (38%), Gaps = 24/263 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ +I+ + A+ V E + GRTD GV A Sbjct: 76 ILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKVCLIESRETSNYNRCGRTDKGVSAF 135 Query: 59 RQVAHFDLVREWVPVILCKALN--------AYLKISDTISILNLSIVDK---QFHARFSA 107 QV D+ ++ P + A N A L I L+ + + ARF Sbjct: 136 HQVISLDVRSKFAPELQLDANNLTNELDYCAMLNRVLPEEIRCLAWMPMVNPAYSARFDC 195 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 R+Y Y + + A + + D N+ G + RSI + Sbjct: 196 RSRTYRYFFPRGDLNITAMEESARYLVGAHDFRNLCKMDV---GNGVVSFVRSIDAISIK 252 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 P + D +S+ +++ + + ++FL Q+R + L LVG G+ + ++ L + Sbjct: 253 PSQRDSERDGSSY-DMMYLELQGKAFLWHQVRCIMAVLLLVGQGREKPSVVKDLLDVEQ- 310 Query: 228 KECGP---LAPPEGLYFDSVEYS 247 C P +A L +++ Sbjct: 311 NPCKPQYSMASDVPLNLYDCQFN 333 >gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum] Length = 388 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 97/272 (35%), Gaps = 37/272 (13%) Query: 10 YNGSGYFGW-QRQKNGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHALRQVA-- 62 Y G Y G Q+Q ++++ I+ A+ + +GRTD GV A RQ+A Sbjct: 4 YYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNKCEWIRSGRTDKGVSAFRQIASL 63 Query: 63 --------------------HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 H + ++ K LN L I +L + V F+ Sbjct: 64 IVRSSDPEGEHVFWPENADPHSRITPPHSELMYLKMLNGVL--PKNIRVLAWAPVALDFN 121 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN------MRIAAQHLVGRHDFT 156 ARFS +R Y Y L + L+ D N + + R F Sbjct: 122 ARFSCTKRVYKYAFPRGDFDLEAIRKACSLLIGEHDFRNICRIDLNKARVEMSYVRMVFD 181 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S+ ++ + + +S +L+E +++ FL QIR + + +G G Sbjct: 182 ASISVVLESGERVEVSSEPEPHSPYSLVEFTMISSGFLWHQIRCVMALMYEIGKGNEKPE 241 Query: 217 DLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + + L + RK LAP L Y Sbjct: 242 VISELLDIEKTPRKPAYGLAPSSPLCLFDCSY 273 >gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi] gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi] Length = 503 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 83/237 (35%), Gaps = 18/237 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + +A+ H GRTD V A Sbjct: 99 VLLKVMYFGWDYQGFACQEDSNETIEAFLFRALIRTCLIESRATSNYHRCGRTDKEVSAF 158 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + + ARF Sbjct: 159 CQVISIDLRSKHAPDVQLESDSLATEIDYCSLLNRVLP-KNIQCVSWMPLRNHVYSARFD 217 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 I R+Y Y + + LI D N H + ++ QA Sbjct: 218 CISRTYRYYFPKGDLDIEAMRMACDLIVCHGDFRNFCKMDVHNGVTNYMRNLQAARIQAC 277 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 D+NS + + + A +FL QIR + L LVG + K L Sbjct: 278 EGTAVEVENDLNSGYTMYYLEIQANAFLWHQIRCIMAVLLLVGQKHEEPVIISKLLD 334 >gi|270692650|ref|ZP_06222951.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] gi|270316015|gb|EFA28055.1| tRNA pseudouridine synthase A [Haemophilus influenzae HK1212] Length = 115 Score = 82.6 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 39/105 (37%), Positives = 61/105 (58%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 M+ A Q L+G HDF++FR+ CQ+ +P R + H +V+ G I + + A +F+H +R+ Sbjct: 1 MQQAGQCLLGEHDFSSFRAAQCQSHTPWRNVHHLNVSRIGQYIIVDIQANAFVHHMVRNI 60 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VGSL VG G ++ L ++R+ P A P+GLY V Y Sbjct: 61 VGSLIEVGAGNKPIEWMQWLLDQKNRQLAAPTAKPDGLYLVDVIY 105 >gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger] Length = 517 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 86/273 (31%), Gaps = 35/273 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------VTGEIVVVHGAGR 50 + Y G Y G NG +I+ + KA+ + + AGR Sbjct: 109 IALKFAYLGQRYNGL-EHANGNATPLPTIEEEMYKALRKTRETKPYYINWDGCEYSKAGR 167 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A QV + E V + LN L + + F ARFS R Sbjct: 168 TDRGVSAFGQVIGIRVRNELPYVSM---LNKVLPEDIRVLAWCPRP-PEGFDARFSCGER 223 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK----------SLDCENMRIAAQHLVGRHDFTTFRS 160 Y Y LD E MR AA++ G HDF F Sbjct: 224 HYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCK 283 Query: 161 IH--CQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + Q S R I + + +FL Q+R V L LVG G Sbjct: 284 LDVTKQIESFYRDIFQSSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVGQGLEEP 343 Query: 216 TDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + ++ L RK +A L Y Sbjct: 344 SIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIY 376 >gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex] Length = 429 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 96/270 (35%), Gaps = 35/270 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ +I+ + KA+ + E H GRTD GV + Sbjct: 69 VLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLLESRETSNYHRCGRTDKGVSSF 128 Query: 59 RQVAHFDLVRE-------------------WVPVILCKALNAYLKISDTISILNLSIVDK 99 Q DL V + LN L I ++ + +++ Sbjct: 129 GQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVL--PPEIRMIAWAPINQ 186 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 ARF +R+Y Y + + + + D N L Sbjct: 187 SLSARFDCRQRTYHYYFPKANLNIERMRVASQSLIGEHDFRN-------LCKMDVGNGVI 239 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + D + ++I ++++ ++FL Q+R V L L+G GK +T ++ Sbjct: 240 KFDRRIMDIQIEAIDDDKANSYSMIRLKLIGQAFLWHQVRCIVAILFLIGQGKEETTIIQ 299 Query: 220 KALQAQ--DRKECGPLAPPEGLYFDSVEYS 247 + L + RK +A L + YS Sbjct: 300 ELLNVERNPRKPQYGMASEIPLNLFTCTYS 329 >gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054] Length = 465 Score = 82.6 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 81/264 (30%), Gaps = 22/264 (8%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAI--FLV----TGEIVVVH 46 M +Y + Y G Y G Q +++ + KA+ + T + Sbjct: 83 MNKYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEPTPDKCKFS 142 Query: 47 GAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 GRTD GV A+ QV + N + +I I L D R + Sbjct: 143 RCGRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPD----IRMT 198 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA- 165 A+ + R + + +++ + + Sbjct: 199 AVCLRPPPKFDARFSCDYRHYRYLFKKHDLDIELMNEACIKYIGSHDFRNFCKIDGSKQI 258 Query: 166 SSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--L 222 ++ +R + + + + + +FL Q+R V L L+G +T +E L Sbjct: 259 TNYVREVYSMKIIHLKDDFYAVDLKGSAFLWHQVRCMVAILFLIGQKLEATTIIEDLFDL 318 Query: 223 QAQDRKECGPLAPPEGLYFDSVEY 246 + K +A L Y Sbjct: 319 EKYPTKPVYEMANDIPLVLYDCIY 342 >gi|325969586|ref|YP_004245778.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28] gi|323708789|gb|ADY02276.1| tRNA-pseudouridine synthase I [Vulcanisaeta moutnovskia 768-28] Length = 272 Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 97/246 (39%), Gaps = 26/246 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + Y+GS + G+ +SI+ + +AI + A RTD GV A+ Sbjct: 1 MPTMAFKVLYDGSLFSGFTG--GTNSIEYYLRRAIRYFIK-DFGLSKASRTDPGVSAVGN 57 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V + + ++ LN+ L + I + + V FHAR + R Sbjct: 58 VIS--IKYDDGIRLMPGMLNSRL--PNGIRVWAWAEVSDDFHARAAVSR----------- 102 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 + D + MR A + VG HD + F+ + + +V Sbjct: 103 ------TYVYVMPWLYEDVDLMRRATELFVGVHDLSNFQVKERGVPTTVMIS-SVNVERL 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+ + +V + F + IR V ++++VG T +L ++ + R+ P A P GL Sbjct: 156 GDYLVFTIVGKGFRNKMIRKIVNAIRMVGISNLTLDELRDLIELRVRRP-IPPASPYGLL 214 Query: 241 FDSVEY 246 SV Y Sbjct: 215 LLSVSY 220 >gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae] gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae] Length = 492 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 85/253 (33%), Gaps = 24/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q++ + +I+ + +A+ H GRTD V A Sbjct: 100 VLLKVSYFGWDYQGLACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P A LN L + + + + + ARF Sbjct: 160 CQVISIDLRSKHPPESQLDATSISSEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 218 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + R+Y Y + + + + D N H + +S +A Sbjct: 219 CVARTYRYYFPKGDLDIPAMQEACNHLVRHADFRNFCKMDVHNGVTNYTRNLQSARVEAC 278 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T +D+ + + A +FL QIR + L LVG K + + L + Sbjct: 279 EETLTDSGYDMY------YLEIQANAFLWHQIRCIMAVLILVGQKKEKPSVVTDLLDVEV 332 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 333 NPCKPQYTPAIGL 345 >gi|195336235|ref|XP_002034747.1| GM14299 [Drosophila sechellia] gi|194127840|gb|EDW49883.1| GM14299 [Drosophila sechellia] Length = 499 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 98/281 (34%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLERSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 A R+YLYR I + ++ I + M Sbjct: 121 ATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPIEEIDRCYFLQSSSFDIKRVQAASRMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTIPSKNS 281 >gi|154341677|ref|XP_001566790.1| pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 499 Score = 82.2 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 99/262 (37%), Gaps = 34/262 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 + + + Y+G + G +QK ++++G + A+ V GRTD GV Sbjct: 60 RKIGLRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRVRLIPEDGPHNFGRCGRTDKGVS 119 Query: 57 --------ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 R D + P+ C LN L TI I+ ++VD +F ARFS + Sbjct: 120 ALGNAFSLTARASCTADADPQLPPLDYCSMLNNVL--PSTIRIVGCALVDDRFDARFSCV 177 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 R+Y Y R LA + AA L + + S+ Sbjct: 178 HRTYRYYFCHRGLNLAAMQ---------------EAAAFFLGTHNFRNFCQMDVVNVSNF 222 Query: 169 IRTIDHFDVNSFGNLIEIRVV----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 RT+ ++ L E+ A SFL+ QIR + L LVG G + ++ L+ Sbjct: 223 TRTVLSVGLHPSEELPELISYLEITANSFLYHQIRCTMEVLFLVGRGLEAPSVVQTMLEL 282 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 D K PLA L + Sbjct: 283 GDCKPTYPLADGTPLILWDCAF 304 >gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 493 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 101/286 (35%), Gaps = 43/286 (15%) Query: 1 MIRY-----CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF-LVTGEIVVVH-------G 47 M Y M Y+G Y G+ RQ + I+ +IEK +F + ++ Sbjct: 72 MENYRQRMVAMKFLYSGERYCGFARQDH---IEETIEKYLFDTMQRTKLITSIDDCCYSR 128 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY---------LKISDTISILNLSIVD 98 GRTD GV A QV + +++ + I ++ VD Sbjct: 129 CGRTDKGVSAFGQVIGIKVRSNVPIDAELLDVDSLDQVASGGRVRVKTQDGRIRKITEVD 188 Query: 99 KQFHARFSAIRRSYLYRIIT-------RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + +Y ++ R R + + K LD E MR+AA G Sbjct: 189 YAASLNRTLPSDIRVYSVVNAPNNFSARFNCDRGRSYRYFFMKKDLDIEKMRLAAIGFEG 248 Query: 152 RHDFTTFRSIHCQASSPIRTIDHF---------DVNSFGNLIEIRVVARSFLHTQIRSFV 202 HDF F I + R + F D N + + + +FL Q+R V Sbjct: 249 LHDFRNFCRIDTNCQTFDRNVRSFKIKSSDEIGDKNPYRQMYYFEIHGNAFLWHQVRCMV 308 Query: 203 GSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 L L+G G+ + ++K L + RK +AP L + Sbjct: 309 SILFLIGQGREEPSIVKKMLDIEKYPRKPQYAIAPDHPLVLHDCRF 354 >gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens] Length = 279 Score = 81.9 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 80/238 (33%), Gaps = 23/238 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 R + Y G Y+G Q+ +I+ + A+ +GRTD GV Sbjct: 9 RRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKTCLIENRTNSNYSRSGRTDKGVS 68 Query: 57 ALRQVAHFDLVRE-----------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 AL QV ++ + K LN L I IL + VD F ARF Sbjct: 69 ALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVL--PGDIRILAWAPVDNDFSARF 126 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 + + R+Y Y + A + D N + + FR Sbjct: 127 NTVSRTYKYYFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDL-----ANVSNFRREILSI 181 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + N + EI V ++FL Q+R V L L+G G + + L Sbjct: 182 KVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLEDANIINYMLD 239 >gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia] gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia] Length = 498 Score = 81.5 bits (199), Expect = 9e-14, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 88/253 (34%), Gaps = 24/253 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 101 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 160 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P C LN L + + + + + ARF Sbjct: 161 CQVISIDLRSKHPPESQLDPTSLSSEIDYCGLLNRVLP-KNIQCVAWMPLRSSVYSARFD 219 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + RSY Y +A + L+ + D N H + +S +A Sbjct: 220 CVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEAC 279 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 T +D+ + + A +FL QIR + L LVG K + L + Sbjct: 280 DENHTNSGYDMY------YLEIRANAFLWHQIRCIMAVLILVGQKKEKPAIISDLLNVES 333 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 334 NPCKPQYTPAIGL 346 >gi|195586672|ref|XP_002083097.1| GD13536 [Drosophila simulans] gi|194195106|gb|EDX08682.1| GD13536 [Drosophila simulans] Length = 499 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 98/281 (34%), Gaps = 52/281 (18%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG--------SSIQGSIEKAIFLVTGE-IVVVHGAGRT 51 M RY + I Y G+ + G Q+ N +SIQG +E A+ + + + RT Sbjct: 1 MHRYLLNISYIGTTFRGIQKTVNKLEQSRLDTNSIQGCLELALQVFHPTNEIHTVLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFS 106 D+GVHAL DL R L L I +L+ +V FH R+ Sbjct: 61 DAGVHALHSTVQVDLERTNGQPYDTTILTGVLNRTLNKQRLPIRVLSSKLVANSFHCRYD 120 Query: 107 AIRRSYLYRI-----------------------ITRQAPLALEKGRAWLIPKSLDCENMR 143 A R+YLYR + + ++ I + M Sbjct: 121 ATGRTYLYRFAVAKDPPLGDCSLRNRSFETFIPVEEIDRCYFLQSSSFDIKRVQAASRMF 180 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------------FGNLIEIRV 188 I + + +R ID ++ N +I + Sbjct: 181 IGVHDFRTFMSVSRQKVSRDHPMFTVRKIDEINIRPGETRALSSNAILAAETYNYWDIEI 240 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 A+SFL+ Q+R VG+L +G+G+ L + L + Sbjct: 241 RAKSFLYKQVRRIVGALIALGNGRIDERCLYQMLTIPSKNS 281 >gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum] Length = 449 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 79/280 (28%), Gaps = 35/280 (12%) Query: 2 IRY-CMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL---VTGEIVVVHG-AGRTDSGV 55 RY + Y G Y G+ Q +I+G + KA+ ++ + +GRTD GV Sbjct: 67 RRYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSLISDIKTSNYAKSGRTDKGV 126 Query: 56 HALRQVAHFDL-------------------VREWVPVILCKALNAYLKISDTISILNLSI 96 A QV + P + Sbjct: 127 SAFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNSNSNNQKQQNKAKEEFP 186 Query: 97 VDKQFHARFSAIRRSY-----LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 K + R + +R + L + + +L Sbjct: 187 YVKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNNMDLNLMKEAGNHYLGE 246 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDV---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + S R I F + N+ +L + +FL QIR + L L+ Sbjct: 247 HDFSNFCKMDIENVKSFKRVILEFSIEPVNNHNDLYVATIKGYAFLWHQIRCMMAMLFLI 306 Query: 209 GDGKWTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 G K+ + + + L + P +A L Y Sbjct: 307 GQKKFPVSIIPELLDTSNGITKPPYEMASEIPLVLFDCGY 346 >gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC 6260] Length = 431 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 75/241 (31%), Gaps = 35/241 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL--VTGEIVVVHG----AGRTDSG 54 + Y G Y G Q +++ I +A+ + E + GRTD G Sbjct: 72 IALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKG 131 Query: 55 VHALRQVAHFDLVR------------EWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 V A+ QV ++ + + LN+ L S I+ + L+ F Sbjct: 132 VSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGICLNPPP-GFD 190 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y L A D N F Sbjct: 191 ARFSCSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRN-------------FCKIDGSK 237 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + + + +FL Q+R +G L LVG + +++ L Sbjct: 238 QITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELL 297 Query: 223 Q 223 Sbjct: 298 N 298 >gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC 6260] Length = 431 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 75/241 (31%), Gaps = 35/241 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL--VTGEIVVVHG----AGRTDSG 54 + Y G Y G Q +++ I +A+ + E + GRTD G Sbjct: 72 IALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKG 131 Query: 55 VHALRQVAHFDLVR------------EWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 V A+ QV ++ + + LN+ L S I+ + L+ F Sbjct: 132 VSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITILNSLLPPSIRITGICLNPPP-GFD 190 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y L A D N F Sbjct: 191 ARFSCSYRHYRYIFRRYDLDLEAMTEAAKKYEGEHDFRN-------------FCKIDGSK 237 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + + + +FL Q+R +G L LVG + +++ L Sbjct: 238 QITNYGRTILSANIMPLKDDYYVFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELL 297 Query: 223 Q 223 Sbjct: 298 N 298 >gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans] Length = 444 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 26/263 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ + +I+ + KA+ H GRTD V A Sbjct: 57 VLLKFLYFGWDYQGFACQEDSNNTIEFHLFKALTRTCLIESRSSANYHRCGRTDKKVSAF 116 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV DL ++ + + L+ + ++ K R++L+ Sbjct: 117 CQVISIDLRSKFPEKQQFEE--SCLEKEIDYCGIMNRVLPKNIRCISWMPIRNHLFSARF 174 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPI--------- 169 R + +L+ M+ A + L DF + Sbjct: 175 DCITRT---YRYFFPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHNGVTNYVRHIEAAN 231 Query: 170 ---RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + N + + + A +FL QIR + L L+G K + + + L + Sbjct: 232 VRLCPHQNESKNKGYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKEEPSVINELLNV-E 290 Query: 227 RKECGP---LAPPEGLYFDSVEY 246 + C P A L E+ Sbjct: 291 KNPCKPQYTPAMGFPLNLYHCEF 313 >gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767] gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii] Length = 444 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 81/266 (30%), Gaps = 37/266 (13%) Query: 4 YCMIIEYNGSGYFG--WQRQKN-GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G +Q + +++ I KA+ V GRTD G Sbjct: 86 IALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKLITQVDPACCNFSRCGRTDKG 145 Query: 55 VHALRQVAHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFH 102 V A+ QV D+ +P + LN+ L I+ + L K F Sbjct: 146 VSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLAILNSLLPTDIRITAVCLRPPPK-FD 204 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y L L + A D N F Sbjct: 205 ARFSCSYRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFRN-------------FCKIDGSK 251 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + ++ + + +FL Q+R + L VG + ++ + Sbjct: 252 QITNYKREVLSANIIHLRDDFYIFDLKGSAFLWHQVRCMMAVLFAVGQKLEAPSIIDDLV 311 Query: 223 QAQDR--KECGPLAPPEGLYFDSVEY 246 + K +A L + Sbjct: 312 DVEKFPGKPSFEMANDVPLVLYDCVF 337 >gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB] Length = 431 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 83 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 142 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 143 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 197 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 198 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 257 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + ++ +FL Q+R + L LVG + + ++ ++ Sbjct: 258 ISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 317 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 318 VYEMANDIPLLLYDCKF 334 >gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665217|emb|CAZ35977.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 413 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 22/260 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEI---VVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F +T E V A +TD V Sbjct: 41 AILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSV 100 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY--- 112 AL QV L + + LN L + + + ++ + Y Sbjct: 101 SALGQVCSMQLKEDTDLLSK---LNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLP 157 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + + + L + + + R+ ++ + + S R I Sbjct: 158 TFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYI 217 Query: 173 DHFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + IR+ +SF+ QIR +G V G T + + ++ R Sbjct: 218 ISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVFSKAR 276 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P AP GL + V++S Sbjct: 277 -IDIPKAPGLGLMLNQVDFS 295 >gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665216|emb|CAZ35976.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 428 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 22/260 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEI---VVVHGAGRTDSGV 55 +++ Y+G GY+G QR +I+G + KA+F +T E V A +TD V Sbjct: 56 AILLMYSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSV 115 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY--- 112 AL QV L + + LN L + + + ++ + Y Sbjct: 116 SALGQVCSMQLKEDTDLLSK---LNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLP 172 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + + + L + + + R+ ++ + + S R I Sbjct: 173 TFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYI 232 Query: 173 DHFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + IR+ +SF+ QIR +G V G T + + ++ R Sbjct: 233 ISAECMPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVFSKAR 291 Query: 228 KECGPLAPPEGLYFDSVEYS 247 P AP GL + V++S Sbjct: 292 -IDIPKAPGLGLMLNQVDFS 310 >gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 560 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 92/310 (29%), Gaps = 73/310 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAART 182 Query: 52 DSGVHALRQVAHFDLVREWVPVILCK----ALNAYLKISDTISILNLSIVDKQFHARFSA 107 D+GVHA V ++ E K +N +L D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFL--PDQIRMWGWVRTVKSFNARTAA 240 Query: 108 IRRSYLYRIITRQAPLALEKG--------------------------------------- 128 R Y Y + + + Sbjct: 241 DSRIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSDEGEV 300 Query: 129 -------RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---------TI 172 +D + + + F + R + Sbjct: 301 DPKVRGEYERKRKWRVDEKTLGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEV 360 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V I +++ +SF+ QIR + L + L + +K P Sbjct: 361 KEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETF--GPKKIHIP 418 Query: 233 LAPPEGLYFD 242 APP GL + Sbjct: 419 KAPPLGLLLE 428 >gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a] gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291] gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO] Length = 442 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 208 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 209 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 268 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + ++ +FL Q+R + L LVG + + ++ ++ Sbjct: 269 ISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 328 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 329 VYEMANDIPLLLYDCKF 345 >gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var. neoformans B-3501A] Length = 560 Score = 81.1 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 92/310 (29%), Gaps = 73/310 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL---------VTGEIVVVHGAGRT 51 R ++I Y G+GY G Q Q + +I+G + A+ + V + A RT Sbjct: 123 RRCAVLIGYCGTGYQGMQIQDHTDRTIEGEVFAALVKAGAVSADNAIDARKVDIARAART 182 Query: 52 DSGVHALRQVAHFDLVREWVPVILCK----ALNAYLKISDTISILNLSIVDKQFHARFSA 107 D+GVHA V ++ E K +N +L D I + K F+AR +A Sbjct: 183 DAGVHAAGNVISIKMITEPPLPEGFKDVAEYVNTFL--PDQIRMWGWVRTVKSFNARTAA 240 Query: 108 IRRSYLYRIITRQAPLALEKG--------------------------------------- 128 R Y Y + + + Sbjct: 241 DSRIYEYLLPSYCLIPPHKDDSLAKHLDLSSPDWREIVGEGPCSFADARLPMPTSDEGEV 300 Query: 129 -------RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---------TI 172 +D + + + F + R + Sbjct: 301 DPKVRGEYERKRKWRVDEKTLGRFRDIIAQYKGTHNFYNYTVGKPFNDRAVKRFMIKLEV 360 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 V I +++ +SF+ QIR + L + L + +K P Sbjct: 361 KEPKVYGEIEWISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETF--GPKKIHIP 418 Query: 233 LAPPEGLYFD 242 APP GL + Sbjct: 419 KAPPLGLLLE 428 >gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118] Length = 442 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQNYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 208 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 209 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 268 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + ++ +FL Q+R + L LVG + + ++ ++ Sbjct: 269 ISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 328 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 329 VYEMANDIPLLLYDCKF 345 >gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans T30-4] Length = 510 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 59/279 (21%), Positives = 98/279 (35%), Gaps = 33/279 (11%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAI--FLVTGEIVVVHG---AGRTDSG 54 M + Y G Y G+ RQ + +++ + +A+ + E + G GRTD G Sbjct: 72 MRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKLI-ENIDDAGYSRCGRTDRG 130 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL---------SIVDKQFHARF 105 V A QV + + + + + VD H Sbjct: 131 VSAFGQVVALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYASHINR 190 Query: 106 SAIRRSYLYRIITR------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + +Y + + + R + + + LD E MR AAQ+LVG+HDF F Sbjct: 191 ALPADIRVYAVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQYLVGKHDFRNFC 250 Query: 160 SIHCQASSPIRTIDHFDVNSF---------GNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 I R + F++ + V R+FL Q+R V L L+G Sbjct: 251 RIDPNCHVFERNVRSFEIVECPGQRADDPSQQMYRCEVFGRAFLWHQVRCMVEVLFLIGS 310 Query: 211 GKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEYS 247 G+ + + K L RK +A L ++ Sbjct: 311 GREEPSIIPKLLDIAQTPRKPQYDMASDLPLVLHDCYFA 349 >gi|297619849|ref|YP_003707954.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing protein [Methanococcus voltae A3] gi|297378826|gb|ADI36981.1| Pseudouridine synthase I, TruA, alpha/beta domain protein [Methanococcus voltae A3] Length = 271 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 90/249 (36%), Gaps = 29/249 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHALRQ 60 Y + Y+G Y +Q Q + ++ + + ++ ++ GRTD GV AL Sbjct: 2 YIFKVAYDG-RYS-FQLQPHEKTVCDILTNILVDCGYLSEFKKPLYYGGRTDLGVSALGN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 +DL +E + + + +N + H R+ Sbjct: 60 FVIYDLDKEPILTHIYSKCKGFGIWVLGYQKINEFPNVEYRHYRY--------------- 104 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNS 179 + D + ++ ++ L+G H F + + P+RTI V Sbjct: 105 -----ILPKVDAYGNFHDMDKIKKVSECLIGTHSFHNLSKRDKTKNRDPVRTIYDITVED 159 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPP 236 I + + +SFL +R +G + VG + T+ ++E+ + K P++ Sbjct: 160 NEYFITLNIYGKSFLWNMVRKIIGLISNVGISEMTNEEIEEYMDKVFNPSIKVGSPISSA 219 Query: 237 EGLYFDSVE 245 EGL + Sbjct: 220 EGLVLVEAK 228 >gi|316969725|gb|EFV53781.1| tRNA pseudouridine synthase A [Trichinella spiralis] Length = 380 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 62/176 (35%), Gaps = 23/176 (13%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-----------------TGEIV 43 M RY Y GS + G Q Q N ++QG +E ++ GE Sbjct: 71 MPRYFFNFAYLGSRFSGSQSQPNQLTVQGVLEVSLIKFAYFDCRQNVLAMILLSPLGEEP 130 Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCK--ALNAYLKI-SDTISILNLSIVDKQ 100 + + RTD+GVHA A DL E ALN+ L I I + V Sbjct: 131 RWYFSSRTDAGVHAFMNTATVDLDPERDFDSDYLKSALNSMLTKLDMEIRINSCRRVSGG 190 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 F AR A+ R YLYR+ + + + + + L+ Sbjct: 191 FCARRHALEREYLYRLAILKPEFESDHHKQTNNTSTT---QNAHHSLPLIEHRRAW 243 >gi|169839443|ref|ZP_02872631.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59 +I +Y+GS + G+QRQK N ++QG IEK I + + + +GRTD GVHA+ Sbjct: 4 RNVKIIYQYDGSKFLGFQRQKDNNVKTVQGEIEKVILKTFSQNINMISSGRTDKGVHAME 63 Query: 60 QVAHF 64 QV++F Sbjct: 64 QVSNF 68 >gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] Length = 442 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 208 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 209 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 268 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + ++ +FL Q+R + L LVG + + ++ ++ Sbjct: 269 ISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 328 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 329 VYEMANDIPLLLYDCKF 345 >gi|213584576|ref|ZP_03366402.1| tRNA pseudouridine synthase A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 57 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAG 49 + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AG Sbjct: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPINVFCAG 57 >gi|14318522|ref|NP_116655.1| Deg1p [Saccharomyces cerevisiae S288c] gi|399356|sp|P31115|PUS3_YEAST RecName: Full=tRNA pseudouridine synthase 3; AltName: Full=Depressed growth-rate protein DEG1; AltName: Full=tRNA pseudouridylate synthase 3; AltName: Full=tRNA-uridine isomerase 3 gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae] gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae] gi|285811895|tpg|DAA12440.1| TPA: Deg1p [Saccharomyces cerevisiae S288c] Length = 442 Score = 80.7 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 208 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 209 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 268 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + +V +FL Q+R + L LVG + + ++ ++ Sbjct: 269 ISSKILPLSETFYCFDLVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 328 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 329 VYEMANDIPLLLYDCKF 345 >gi|219363303|ref|NP_001136956.1| hypothetical protein LOC100217116 [Zea mays] gi|194697754|gb|ACF82961.1| unknown [Zea mays] Length = 201 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 7/173 (4%) Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 +N L + ++ + +FHAR S + Y Y+I A+ L+ Sbjct: 1 MNGLLPPEIRVREISAARP--EFHARSSTKSKVYRYKIYNEAIMDPFHNHYAYHSAYKLN 58 Query: 139 CENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 M+ AA + VG HDFT+F + + P + I FDV G ++++ V FL+ Sbjct: 59 PHAMQEAANYFVGIHDFTSFANAAHNDGERRPTKKITRFDVTEMGAVLQLEVEGTGFLYR 118 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 Q+R+ V L VG + + A+DRKE + APP GLY SV Y Sbjct: 119 QVRNMVALLLQVGKEALPPDIVPAIIAARDRKELAKVALSAPPHGLYLMSVNY 171 >gi|159479156|ref|XP_001697664.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] gi|158274274|gb|EDP00058.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii] Length = 382 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 10 YNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Y+GS + G+Q Q ++QG +E+ + + G+ RTD G HA QV HFD+ Sbjct: 29 YDGSEFAGFQFQPGKVRTVQGELERCAKRLFVGCSRMVGSSRTDGGAHAYGQVVHFDVYG 88 Query: 69 EWVP-VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEK 127 E N++L + L+ + H Y + A + Sbjct: 89 ERDNLESDTLYYNSFLPPDVRVLELSYAEEGFDSHFSACGKTYIYKFAAGLPDPMQAKYR 148 Query: 128 GRAWLIPK 135 + Sbjct: 149 WWVYDRWC 156 >gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720] Length = 447 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 69/241 (28%), Gaps = 35/241 (14%) Query: 4 YCMIIEYNGSGYFG--WQRQKN-GSSIQGSIEKAIFLV------TGEIVVVHGAGRTDSG 54 Y G Y G +Q + +++ I +A+ GRTD G Sbjct: 86 VAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCNFSRCGRTDKG 145 Query: 55 VHALRQVAHFDLVREWVPVILCKA------------LNAYLKISDTISILNLSIVDKQFH 102 V AL QV D+ LNA L I+ + L F+ Sbjct: 146 VSALNQVISLDVRSALSKEEHADKEKDVKELPYLTILNALLPPDIRITAVCLRPPP-NFN 204 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 ARFS R Y Y + L + A D N F Sbjct: 205 ARFSCKYRHYKYLFKKTDLDVDLMQEAALKYEGPHDFRN-------------FCKIDGSK 251 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + + +FL Q+R V L VG + + ++ L Sbjct: 252 QITNHCREVYSARIEHFKDDFYVFDLKGTAFLWHQVRCMVAVLFSVGQKLESPSIVDDLL 311 Query: 223 Q 223 Sbjct: 312 N 312 >gi|297723909|ref|NP_001174318.1| Os05g0279300 [Oryza sativa Japonica Group] gi|255676206|dbj|BAH93046.1| Os05g0279300 [Oryza sativa Japonica Group] Length = 133 Score = 80.3 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---EIVVVHGAGRTDSGVHALR 59 ++ M+I Y+G+ + GWQ Q + +IQ SIE A+ +T + + + GAGRTD+GVHA Sbjct: 62 KWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAWG 121 Query: 60 QVAHF 64 H Sbjct: 122 GAFHH 126 >gi|159117386|ref|XP_001708913.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803] gi|157437027|gb|EDO81239.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803] Length = 351 Score = 80.3 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 85/261 (32%), Gaps = 28/261 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 +R +++ ++G+ + G Q GS+++G++ + + T + + + GRTD+ Sbjct: 1 MRVALLVAFHGTAFHGNAYQPTGGSTVEGALFEGLQKTGYLKENETIKDIELERTGRTDA 60 Query: 54 GVHALRQVAHFDL-----VREWVPVILCKALNAYLKISD--------------TISILNL 94 GV A + L +P + L A + ++ Sbjct: 61 GVSAECMLYTLQLGKLVPAVPCLPPHNSRVLGALEGLPIEPSSICIHTSGSATCLAFHLN 120 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 ++ Q + + E + +P +L + A + L Sbjct: 121 RVLPSQIRVLGLSTAIPKDFSARHSCVAREYEYILGYNVPPNLREKANSAAQRFLGSNSF 180 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + R I +V N V+ +FL+ Q+R L + G Sbjct: 181 HNFCHHERDHKTVYNRQIYCSEVYEHENACIFHVIGSAFLYHQVRYMASMLIHIMAGLEN 240 Query: 215 STDLEKALQAQDRKECGPLAP 235 + +E L ++ G P Sbjct: 241 ESAIEYLL-TKELSISGHSFP 260 >gi|291234813|ref|XP_002737344.1| PREDICTED: MGC80334 protein-like [Saccoglossus kowalevskii] Length = 520 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 13/180 (7%) Query: 1 MIRYCMIIEYNGSGYFG-WQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHAL 58 M RY + I Y G+ + G Q ++Q IE A+ + + ++ + RTD+GVHAL Sbjct: 1 MCRYLLYISYLGTNFRGVVQTNSTSPTVQRVIEGALHTLKPQEAAKLYFSSRTDAGVHAL 60 Query: 59 RQVAHFDLVREWVPVILCKAL------NAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 AH D VR + N L I I ++ V +FHARF A R+Y Sbjct: 61 NNTAHVDFVRRNNQQPFSGEVLKTILNNKLLIAQQDIRINDVKKVPDEFHARFQAKGRTY 120 Query: 113 LYRIITRQAP-----LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 +YRI + E R W++ LD E M+ A + +G HDF FRS + + Sbjct: 121 VYRIASNWNCALNHIPLFENHRCWMVSYRLDIEKMKQACEVFIGTHDFAAFRSKNNKNVH 180 >gi|119504507|ref|ZP_01626586.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] gi|119459529|gb|EAW40625.1| tRNA pseudouridine synthase A [marine gamma proteobacterium HTCC2080] Length = 226 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 42/108 (38%), Positives = 64/108 (59%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 C M A+Q L+G HDF+ FR+ CQA+ P+R I VN G+ + + + A +FL+ + Sbjct: 99 CIAMHNASQILLGEHDFSAFRAAQCQAAHPVRQIFGVSVNRVGDFVILDIEANAFLYHMV 158 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R+ VGSL++VG G+ +E+ L+ +DR G A GLY S+ Y Sbjct: 159 RNLVGSLQMVGSGQRPPEWIEQLLEGKDRTLGGDTASASGLYLQSITY 206 >gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14] Length = 463 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 87/299 (29%), Gaps = 55/299 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 RY + Y G Y G Q + ++I+ +E+A+F G + + A RTD Sbjct: 72 RRYGFWVAYCGEKYSGMQLNEGVATIEAELERALFQAGGISDANYGFLQKIGWSRAARTD 131 Query: 53 SGVHALRQVAHFDLVRE---------WVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 GVHA Q+ L + + +NA L + + + Sbjct: 132 KGVHAAGQLVTAKLSFDSKSSEDRNGEQIKGFIEKINASLPSDIRVMDMVTVTKNFNAKL 191 Query: 104 RFSAIRRSYLY---------------------------RIITRQAPLALEKGRAWLIPKS 136 YL + + ++ + Sbjct: 192 SCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQAEEIVPKTTDLHLDVNHQQAYRMSTEQY 251 Query: 137 LDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-----GNLIEIRVVAR 191 D + + H+FT+ D I +RV + Sbjct: 252 DDLNRILAKFEGSHTFHNFTSKLLPTSPKCQRYIVSFKADQPFVPSNSAFEWIRLRVKGQ 311 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 SFL QIR +G+ + G S +E+ + P AP GLY Y+ Sbjct: 312 SFLLHQIRKMIGTAVDLCAGAAESNVIERVMLLDKMDL--PKAPSVGLYLSEAHFEKYN 368 >gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum] Length = 510 Score = 79.9 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 72/276 (26%), Gaps = 33/276 (11%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+ +I+G + A+ + +GRTD GV A Sbjct: 93 VALKVAYLGWHYHGFAAQQCTEETIEGHLFSALQKTCLIRDIKECNYTKSGRTDKGVSAF 152 Query: 59 RQVAHF-------------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDK 99 QV D + ++ + Sbjct: 153 GQVISLYVRSNLKQGDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTPIEYPYVRMLNGV 212 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + R + L + L + Sbjct: 213 LPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAGNHFLGSHDFSNFCK 272 Query: 160 SIHCQASSPIRTIDHFD-------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 S R I FD G L E + +FL QIR + L L+G K Sbjct: 273 IDLEAVKSFTRVILSFDIAPVPVGQFQSGGLYEATICGYAFLWHQIRCMMAMLLLIGQKK 332 Query: 213 WTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 + +T ++ L + K +A L Y Sbjct: 333 FPTTIIKDLLDTSSAIAKPSYEMASEIPLVLYDCGY 368 >gi|307211854|gb|EFN87801.1| tRNA pseudouridine synthase A [Harpegnathos saltator] Length = 270 Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 86/236 (36%), Gaps = 32/236 (13%) Query: 22 KNGSSIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 ++G ++QG++E A+ + + ++ + RTD+GVHAL H +L ++ + Sbjct: 2 RDGDTVQGALEAALLNILPKTTIRPNIYLSSRTDAGVHALCNAGHVELENKYNVLYKDDN 61 Query: 79 L-----NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI 133 + + K TI +L + V FHAR S R+Y+YR + + P Sbjct: 62 IKAFVNRYFNKCGHTIRLLEFTPVTNDFHARGSCKSRTYIYRFMIPKVPGEQRIPLVDAP 121 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 T H ++ + + + Sbjct: 122 H---------------------TYLVKAHDFDVDRVKCGTQLFMGVKDFTTFSSMSITNR 160 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP---LAPPEGLYFDSVEY 246 +R VG+L +G K T D+ LQ P AP GL+ ++EY Sbjct: 161 KIEYVRRMVGALISLGLRKITEKDINVMLQVPSHHNWNPRASSAPANGLHLVNLEY 216 >gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii] Length = 372 Score = 79.5 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 28/266 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y GS Y G+ Q ++++ I A+ + GRTD GV A Sbjct: 69 VALKIMYIGSCYHGFASQGCAFNTVESEIFAALQRTNLVVGSIADANYSRCGRTDRGVSA 128 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI--------- 108 QV L + + + K ++ + + Sbjct: 129 TAQVIALYLRSKKKALDDTEESGYGSKDRVIVARSSREEEEMFAAETDDDEIDYVSSLNR 188 Query: 109 ----------RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 R + L E ++ + + + L Sbjct: 189 ALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRLLGEHDFRNFC 248 Query: 159 RSIHCQASSPIRTIDHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + + R I FD+ L + V +FL Q+R L ++G G T T Sbjct: 249 KMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQVRCMAAVLFMIGRGHETLTI 308 Query: 218 LEKALQAQD--RKECGPLAPPEGLYF 241 ++ L RK +AP L Sbjct: 309 IDDLLDVDKTMRKPQYVMAPELPLVL 334 >gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni] gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni] Length = 495 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 86/253 (33%), Gaps = 22/253 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 109 VLLKVTYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRANSNYHRCGRTDKEVSAF 168 Query: 59 RQVAHFDLVREWVPV------------ILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL ++ C LN L + + + + + ARF Sbjct: 169 CQVISIDLRSKYPAESQLDPTSLATEIDYCGLLNRVLP-KNIQCVAWMPLRSPVYSARFD 227 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 I RSY Y + + L+ D N + + T+F A Sbjct: 228 CIARSYRYYFPKGDLDIEAMQEACQLLVNHADFRNF----CKMDVHNGVTSFMRNLQAAR 283 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + S + + + A +FL QIR + L LVG K S+ + L Sbjct: 284 VQPCEQTRNEKVSGYAMFYLEIKANAFLWHQIRCIMAILLLVGQRKEKSSIISDLLDVNV 343 Query: 227 RKECGPLAPPEGL 239 P GL Sbjct: 344 NPCKPQYTPAIGL 356 >gi|317501503|ref|ZP_07959701.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088022|ref|ZP_08336944.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897132|gb|EFV19205.1| pseudouridylate synthase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409170|gb|EGG88625.1| hypothetical protein HMPREF1025_00527 [Lachnospiraceae bacterium 3_1_46FAA] Length = 252 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 16/250 (6%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+G+ Y GW R +I I + +TGE + + +T GVH Sbjct: 1 MPNIKLTLQYDGTRYLGWTR-PAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVH 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q +F + LN YL I IL+ IV +F + +A+ R+YLYRI Sbjct: 60 ALCQTVNFHTESPFSDTYFLSKLNEYL--PKDIHILSSEIVSDRFRSDLNAVSRTYLYRI 117 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 T + IP+ + + + FRS+ + FD Sbjct: 118 CTAPVQNIFTRAYTANIPEIISESEVAAIRKAADSLVGVHDFRSLSGVKKKKGTVKEIFD 177 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 ++ + + L + + L + + P Sbjct: 178 ISVSHSKETENDSFSLLTIKICANDFLYLM--------PEHIIEFLIKKGVDKEVRCNPA 229 Query: 237 EGLYFDSVEY 246 GL S+ Y Sbjct: 230 -GLLLHSITY 238 >gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis] gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis] Length = 509 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 75/237 (31%), Gaps = 20/237 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ +I+ + +A+ H GRTD V A Sbjct: 100 VLIKVMYFGWDYQGFACQEDSMDTIEAYLFRALIRTCLIESRATSNYHRCGRTDKEVSAF 159 Query: 59 RQVAHFDLVREWVPVILCK------------ALNAYLKISDTISILNLSIVDKQFHARFS 106 QV DL + P + + LN L + + + + + + ARF Sbjct: 160 CQVISIDLRSKHAPDVQMEPEALSSEIDYCSLLNRVLP-KNIQCVSWMPLRNPAYSARFD 218 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 I R+Y Y + + + D N + Sbjct: 219 CISRTYRYYFPKGDLDIEAMRIACQSLVCHGDFRNF--CKMDVHNGVTNYMRNLQGAAIK 276 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 T NS + + + +FL QIR + L LVG + K L Sbjct: 277 PCDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCIMAVLLLVGQKHEQPCVISKLLD 333 >gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis] Length = 430 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 7/227 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G G+ Q+N ++I+ + A+ E GRTD GV A Sbjct: 64 IFLKFCYFGWDTSGFVIQENTSNTIEQFMFDALKKCCLIENIETSNYQKCGRTDKGVSAF 123 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV D+ + A S +L I + S + + T Sbjct: 124 SQVISLDVRSKLENPNHENAEQEIEYCSMLNRLLPPFIKCYSWAHVGSDVGSRHDCSERT 183 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF--D 176 + L+ ++ ++L + + F + Sbjct: 184 YKYYFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITNFNRNIIYADIKPCSFLLE 243 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 S + ++ FL+ QIRS + L LVG K + + L Sbjct: 244 KQSGYQFYIFEIKSKCFLYHQIRSIMSVLLLVGQKKESPDIINDLLD 290 >gi|315928911|gb|EFV08168.1| tRNA pseudouridine synthase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 186 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 4/190 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + L L I I + +S YR I + Sbjct: 60 ASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NLIEIRVVAR 191 + A Sbjct: 177 DFSIFHFKAN 186 >gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H] gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain H] Length = 306 Score = 79.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 18/252 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHA 57 ++ + Y G G+ G QK+ +++ + + L++G RTD GV A Sbjct: 5 HKFIIFFSYVGMGFNGSAYQKDNPNTVENRLMDCLHDMNLISGVDQPFSRVSRTDKGVSA 64 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 L + ++ + I + Sbjct: 65 RMNALTIRLKI------------RHPHMTLQDIQRVYVKEINKKLKNMQVIDIRSVPNFF 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD- 176 + + I K+ + + ++ + VG HDF+ F ++ RTI F+ Sbjct: 113 DARLNCIHRTYLYFFIDKNYNFDRIKQGCKLFVGEHDFSNFCKKRKNSTCFRRTILKFEV 172 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKECGPLAP 235 N ++ SFL+ QIR V +L VG G DL L K+ +A Sbjct: 173 RRMDKNFHYFKIKGTSFLYNQIRHMVAALFQVGTGNLALGDLANMLNNHPSSKKNFQIAN 232 Query: 236 PEGLYFDSVEYS 247 +GL S +++ Sbjct: 233 EDGLLLYSFKFN 244 >gi|320094548|ref|ZP_08026315.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] gi|319978528|gb|EFW10104.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 178 str. F0338] Length = 218 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 2/151 (1%) Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 V F ARFSA RSY+YRI R P L + + LD + AA+ L+G HDF Sbjct: 45 PVSADFDARFSATGRSYVYRIADRPTP--LRRWDCVWDDRPLDLAAVNRAAEALLGEHDF 102 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 +F A++ V + L+E V A +F H+ +RS VG+L LVG G + Sbjct: 103 LSFCRPREGATTIRALTRLEAVRAPDGLVEFHVGADAFCHSMVRSLVGALALVGRGARPA 162 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L A+ R P+AP GL + V+Y Sbjct: 163 PWPRALLDARSRASAAPIAPARGLTLERVDY 193 >gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13] Length = 442 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 19/257 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL------VTGEIVVVHGAGRTDSG 54 + Y G Y G QK +++G+I +A+ + + GRTD G Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSMVLQBYKFSRCGRTDKG 153 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V A+ QV ++ N +I + L D + A Sbjct: 154 VSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAV-----CLRPP 208 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTI 172 + + K+L+ E M AA + VG DF F + Q ++ RTI Sbjct: 209 PNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTI 268 Query: 173 DHFDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA--LQAQDRKE 229 + ++ +FL Q+R + L LVG + + ++ ++ Sbjct: 269 ISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRP 328 Query: 230 CGPLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 329 VYEMANDIPLLLYDCKF 345 >gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis] Length = 420 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 80/251 (31%), Gaps = 36/251 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVH 56 + I Y G Y G+ Q++ +I+ + KA+ E H GRTD GV Sbjct: 58 RKVLFQITYFGWNYHGFTTQEDSCMTIEAHLFKALLTTCLIQSRETSNYHRCGRTDKGVS 117 Query: 57 ALRQVAHFDL---------------------VREWVPVILCKALNAYLKISDTISILNLS 95 A RQV D+ + K +N+ L + + Sbjct: 118 AFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPDIQLIAWTPA 177 Query: 96 ---IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + +F + + + I + + + + M ++ L Sbjct: 178 QNRELSARFDCKKRTYKYFFPLGSIKSLSKMNEAGAKLVGSHDFRNFCKMDVSNGVLTYI 237 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + + S +S +L ++V +FL QIR V L +G G+ Sbjct: 238 RRMVNVSTSVLEPS-------KEKESSPYDLCVLKVEGNAFLWHQIRCIVTVLFHIGQGR 290 Query: 213 WTSTDLEKALQ 223 +++ L Sbjct: 291 EEPELIDELLD 301 >gi|11464733|gb|AAG35307.1| pseudouridine synthase 1 [Mus musculus] Length = 411 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 93/283 (32%), Gaps = 41/283 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 50 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 109 Query: 50 RTDS--GVHALRQVAHFDLVRE-------------WVPVILCKALNAYLKISDTISILNL 94 RTD A + L W+ + +N++L I IL L Sbjct: 110 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHL--PSHIRILGL 167 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLV 150 V F+++ R+Y Y + T ++ + + Sbjct: 168 KRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTH 227 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKL 207 H+FT+ + ++ + + I+V +SF+ QIR VG + Sbjct: 228 NFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVA 287 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 + G + LE++ + K P AP GL + V Y+ Sbjct: 288 IVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFEKYN 328 >gi|148688057|gb|EDL20004.1| pseudouridine synthase 1, isoform CRA_b [Mus musculus] Length = 452 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 93/283 (32%), Gaps = 41/283 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 91 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 150 Query: 50 RTDS--GVHALRQVAHFDLVRE-------------WVPVILCKALNAYLKISDTISILNL 94 RTD A + L W+ + +N++L I IL L Sbjct: 151 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHL--PSHIRILGL 208 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLV 150 V F+++ R+Y Y + T ++ + + Sbjct: 209 KRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTH 268 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKL 207 H+FT+ + ++ + + I+V +SF+ QIR VG + Sbjct: 269 NFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVA 328 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 + G + LE++ + K P AP GL + V Y+ Sbjct: 329 IVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFEKYN 369 >gi|13541901|ref|NP_111589.1| tRNA pseudouridine synthase A [Thermoplasma volcanium GSS1] gi|24212574|sp|Q979R4|TRUA_THEVO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|14325334|dbj|BAB60238.1| pseudouridylate synthase I [Thermoplasma volcanium GSS1] Length = 246 Score = 78.8 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 35/243 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 Y Y G + G+QR S++ +I KA+ ++ A RTD GV AL V + Sbjct: 5 YFFKFGYIGYMFTGYQRGNGVKSVEDTIIKALN--LNSPSLIKTAARTDRGVSALSNVFY 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + ++ + + + + V+ + R+ + Sbjct: 63 IETERRPQDIAGI-----INSKNEYVFVHSFAEVEHGRNPRYCDTK-------------- 103 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 +++P +C+++ + A +G HDF+ F +P R+ID + Sbjct: 104 ----TYMYMLPGETECDSLMVTASGFLGFHDFSKF--SKKDTRNPWRSIDEVKCHRESFG 157 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + A+SFL Q+R + + K + +APPE L Sbjct: 158 VVLEFSAKSFLWNQVRRMLAFILEFRGNKIDPFSVSNIYS--------HIAPPENLILKD 209 Query: 244 VEY 246 + Y Sbjct: 210 IVY 212 >gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis] gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis] Length = 421 Score = 78.8 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 20/251 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + +A+ H GRTD V A Sbjct: 104 VLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 163 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV DL + P + A L L ++ K RS +Y Sbjct: 164 CQVISIDLRSKHTPDTQLE--PASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSAR- 220 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ----------ASSP 168 R + LD E MR A + LVG DF F + ++ Sbjct: 221 --FDCTSRSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAAR 278 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + NS ++ + + A +FL QIR + L LVG + + L + Sbjct: 279 VEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELPRIVSDLLDVETNP 338 Query: 229 ECGPLAPPEGL 239 P GL Sbjct: 339 CKPQYTPALGL 349 >gi|116199417|ref|XP_001225520.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51] gi|88179143|gb|EAQ86611.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51] Length = 553 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 90/297 (30%), Gaps = 55/297 (18%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFL-----------VTGEIVVVHGAGR 50 + + Y G Y G++ Q S +++ + +A+ V GR Sbjct: 110 IALKLAYLGKRYGGFEYQAGVSVSTVEEELWRALAKSCLIWPDDPSRVDFAPWEYSKCGR 169 Query: 51 TDSGVHALRQVAHFDLVREWVPVI--------LCKALNAYLKISDTISILNLSIVDKQFH 102 TD G + + + LN L + + + + F Sbjct: 170 TDKGAGVEVERGRGRGEEDGKRAWDPVADEINYPRILNRLLPPDIRVLAWAPT-LPEDFS 228 Query: 103 ARFSAIRRSYLYRIITRQA---PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 ARFS R Y Y P++++ R LD + MR AA+ G HDF F Sbjct: 229 ARFSCRERQYRYFFTQPAFAPLPISVDPERKKGSEGWLDIDAMRKAAKLFEGVHDFRNFC 288 Query: 160 SIHCQASSPIRTIDHFDVN----------------------------SFGNLIEIRVVAR 191 + F+ + ++ + V Sbjct: 289 KVDGVKQISNFKRRMFEADVVEVEDAGSALPYLAQQGFKPESLVGGTTYPKVYYFHVRGS 348 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 +FL QIR V L LVG G + + L + RK +A L + Sbjct: 349 AFLWHQIRHMVAILFLVGQGLEKPSIVTDLLDVEKNPRKPNYAMAEEVPLVLWDCIF 405 >gi|153813978|ref|ZP_01966646.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] gi|145848374|gb|EDK25292.1| hypothetical protein RUMTOR_00185 [Ruminococcus torques ATCC 27756] Length = 221 Score = 78.4 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 7/133 (5%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVH 56 M + ++Y+G+ Y GW R +I I + +TGE + + +T GVH Sbjct: 1 MPNIKLTLQYDGTRYLGWTR-PAADGYAKTISYRISSVLQKMTGEDITLFAGAKTAPGVH 59 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 AL Q +F + LN YL I IL+ IV +F + +A+ R+YLYRI Sbjct: 60 ALCQTVNFHTESPFSDTYFLSKLNEYL--PKDIHILSSEIVSDRFRSDLNAVSRTYLYRI 117 Query: 117 ITRQAPLALEKGR 129 T + Sbjct: 118 CTAPVQNIFTRAY 130 >gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica] gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica] Length = 443 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 16/237 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL--VTGEIVVVH-----GAGRT 51 + + Y G Y G Q +I+G+I A+ + E + GRT Sbjct: 84 RKIAIRFSYLGWNYGGLAVQHEDTPLPTIEGTILSAMQRCRLIPESASLFDLDFSRCGRT 143 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GV A QV + + P A N +++ + L D R ++ Sbjct: 144 DRGVSAFSQVIALKVRSKLSPEEQQDAANDNKELNYIHILNQLLPPD----IRIYSVALR 199 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL--VGRHDFTTFRSIHCQASSPI 169 +R + + + A +L +F A Sbjct: 200 LPEGFDSRFSCEYRHYRYFFHKGDLDIDLMRQAAKLYLGEHDYRNFCKVDGSKQLAHHNR 259 Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 ++ ++ + R+FL Q+R + L LVG + + L + Sbjct: 260 VMLEAEIEQLSDDIYYFNLKGRAFLWHQVRCMMAILFLVGQKLEKPSVITDLLNPEK 316 >gi|70906468|ref|NP_001020732.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Mus musculus] Length = 441 Score = 78.4 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 93/283 (32%), Gaps = 41/283 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDS--GVHALRQVAHFDLVRE-------------WVPVILCKALNAYLKISDTISILNL 94 RTD A + L W+ + +N++L I IL L Sbjct: 140 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHL--PSHIRILGL 197 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLAL----EKGRAWLIPKSLDCENMRIAAQHLV 150 V F+++ R+Y Y + T ++ + + Sbjct: 198 KRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTH 257 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKL 207 H+FT+ + ++ + + I+V +SF+ QIR VG + Sbjct: 258 NFHNFTSQKGPREPSARRYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVA 317 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 + G + LE++ + K P AP GL + V Y+ Sbjct: 318 IVKGYAPESVLERSW--GEEKVDVPKAPGLGLVLERVHFEKYN 358 >gi|289620363|emb|CBI53221.1| unnamed protein product [Sordaria macrospora] Length = 603 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 92/335 (27%), Gaps = 93/335 (27%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFL---VTGE--------IVVVHGAGR 50 + Y G Y G++ Q + SI+ + KA+ V E GR Sbjct: 81 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKCGR 140 Query: 51 TDSGVHALRQVAHF---------------------------------------------D 65 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQKPE 200 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 V C+ LN L I + + F ARFS R Y Y Sbjct: 201 WDPIADEVPYCRVLNRLLPPDIRIMAWAPA-LPPNFSARFSCRERQYRYFFTQPAFAPMP 259 Query: 126 EK----GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFDVNS 179 + LD MR AA+ G HDF F I Q ++ R I D+ Sbjct: 260 SSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIVE 319 Query: 180 --------------------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + V +FL QIR V L LVG G Sbjct: 320 VKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLE 379 Query: 214 TSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 + +++ L + RK +A L + Sbjct: 380 PPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 414 >gi|294621110|ref|ZP_06700301.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] gi|291599346|gb|EFF30372.1| tRNA pseudouridine synthase A [Enterococcus faecium U0317] Length = 73 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 FL+ IR VG+L +G+G+ + + +DR GP A PEGLY V+ Sbjct: 12 FTFRGNGFLYKMIRILVGTLLKIGNGRLPEDSIPDIIAKKDRNAAGPTAHPEGLYLYEVK 71 Query: 246 Y 246 Y Sbjct: 72 Y 72 >gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium dendrobatidis JAM81] Length = 491 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 93/292 (31%), Gaps = 54/292 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++ Y G+GY G Q + SI+ + KA+ + RTD GVHA QV Sbjct: 99 KKVVLLMSYCGTGYQGMQINPDVPSIELDLHKALA--ASGAIAFMRCARTDKGVHAGGQV 156 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-- 119 + + +NA L I + + V +QFHA+ R Y Y + T Sbjct: 157 VSL--KMIIQDSDIIERINARL--PPQIRVWGYARVQQQFHAKHHCDSRIYEYILPTSVL 212 Query: 120 --------------------------------QAPLALEKGRAWLIPKSLDCENMRIAAQ 147 + P + + + + + + Sbjct: 213 KKVDPTYYPLSKIGVAAGVTFENMGRAKMEPIEIPEHTDNEKETIQGYRTNHQELEEFRA 272 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG---------NLIEIRVVARSFLHTQI 198 L + + ++ + ++ + ++V +SF+ QI Sbjct: 273 ILNEYVGTHNYHNFTIGRKFEDKSSIRYIISFICSEPFQRDNTEWVSLKVKGQSFMLHQI 332 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 R +G ++ + +Q R P AP GL + Y+ Sbjct: 333 RKMIGLAVMMMRTSTPKNLIASTF-SQTRIN-IPKAPALGLLLERPLFENYN 382 >gi|323454992|gb|EGB10861.1| hypothetical protein AURANDRAFT_62396 [Aureococcus anophagefferens] Length = 321 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 85/253 (33%), Gaps = 25/253 (9%) Query: 19 QRQKN-GSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW----VP 72 Q ++QG + A+ G + GA RTD+GVHA Q AH DL Sbjct: 66 AVQPGRARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPL 125 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARF----------SAIRRSYLYRIITRQAP 122 +L +N L + L + K + AR + R +Y A Sbjct: 126 ELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSAD 185 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF-------RSIHCQASSPIRTIDHF 175 R + +++D + A VG HDF F S+ Sbjct: 186 PLGRLYRGHVAYRAVDFGRLDDALACFVGEHDFAAFANNAPGVDPSGAARSTTRSIRSAT 245 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP--L 233 ++ G + L+ +R+ VG+ V DG + L R+ P Sbjct: 246 LLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKA 305 Query: 234 APPEGLYFDSVEY 246 AP GL + V Y Sbjct: 306 APACGLCLEEVYY 318 >gi|207093371|ref|ZP_03241158.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 120 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V F + W L YL I+ + +K FHARF A +R Y Y Sbjct: 60 VLSFHAPKHWNASK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRVYRY 109 >gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 46/284 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAI--FLVTGE-------IVVVHGAGR 50 + + YNG+ Y G Q QK +++ + +A+ + E R Sbjct: 8 QKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWSRGAR 67 Query: 51 TDSGVHALRQVAHFDL------------------------VREWVPVILCKALNAYLKIS 86 TD GVHAL L ++ + +N+ L Sbjct: 68 TDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNL--P 125 Query: 87 DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 + I + ++ +V + F R +A R Y Y + +K ++ K + + Sbjct: 126 NDIKVHSIKLVTQGFDVRKNARYRFYEYIA---PVSIYSDKKGEEILEKVSNLVKKFVGT 182 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + + + + + +SF++ QIR +G + Sbjct: 183 HNFHNY-SRGMKYTDPQSMRYILSIQVELFKCQDREFFKFLIHGQSFIYHQIRKMMGIVI 241 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + + T ++ + LAP EGL+ + + Y+ Sbjct: 242 QIFQEELPDTFIDNTFF--KNQLRIILAPAEGLFLNRISFEGYN 283 >gi|326774000|ref|ZP_08233282.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] gi|326636139|gb|EGE37043.1| tRNA pseudouridine synthase A [Actinomyces viscosus C505] Length = 169 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 39/80 (48%) Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 R D L+ + VVA +F H+ +RS VG+ VG G+ T + L A+ Sbjct: 69 QWRRIEAGPDAGPESGLVTLSVVADAFCHSMVRSLVGAGLAVGQGRKPVTWPRELLDART 128 Query: 227 RKECGPLAPPEGLYFDSVEY 246 R+ P+APP GL + V Y Sbjct: 129 RQSAAPVAPPHGLTLEEVTY 148 >gi|315304866|ref|ZP_07875006.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] gi|313626765|gb|EFR95758.1| tRNA pseudouridine synthase A [Listeria ivanovii FSL F6-596] Length = 83 Score = 78.0 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 170 RTIDHFDVNSFGNLI-EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 RT+ D N I FL+ +R G+L G G+ + D+ KAL A+DR+ Sbjct: 4 RTLYSIDFYEEDNETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDITKALLARDRQ 63 Query: 229 ECG-PLAPPEGLYFDSVEY 246 + APP+GLY V+Y Sbjct: 64 KLISKTAPPQGLYLWRVDY 82 >gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130] Length = 511 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 87/315 (27%), Gaps = 70/315 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL--VTGEIVVVHG-----AGRT 51 + + Y G Y G Q + +++G + A+ + + G GRT Sbjct: 58 RKIALKFSYAGWDYGGLAYQPDDTPLPTVEGVLFDALSTAHLVDSNAGLEGCGWERCGRT 117 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN------------------ 93 D GV RQ+ + L +A ++ + Sbjct: 118 DRGVSGARQIVSVWVRSALRKEELAEADIRPGPVAFPPNSRRAAMDDDDDLPERVDDEPV 177 Query: 94 -------LSIVDKQFHARFSAIR----------------RSYLYRIITRQAPLALEKGRA 130 + +R S + + + + Sbjct: 178 IVNGQDLWKPDTVEPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRHYKY 237 Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFR---SIHCQASSPIRTIDHFDVNSFGNLIEIR 187 + PK LD M+ AA L+G HDF S + + NL Sbjct: 238 FFTPKGLDIVRMQEAAGRLIGEHDFRNLCKLDPAKQITSFKRKVMSAHIERLNDNLHVFN 297 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ----------------DRKECG 231 + +FL+ Q+R + L L+G G + + + L DRK Sbjct: 298 LTGSAFLYHQVRHIMAILFLIGMGMESPSLVSNLLNVTSDSEVPRADDLPYEIVDRKPEY 357 Query: 232 PLAPPEGLYFDSVEY 246 +A L Y Sbjct: 358 QMADGLPLMLWDCGY 372 >gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA] gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei] Length = 281 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 32/239 (13%) Query: 17 GWQRQK-NGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 G QK N ++++ + + + ++ RTD GV A L ++ Sbjct: 1 GSAYQKDNNNTVENKLIEKLQQLDLISDSNCSFSRVSRTDKGVSARMNALTIRLKNKYPH 60 Query: 73 -------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 I K LN LK I I V F AR + I+R+Y+Y I + Sbjct: 61 LSISIIEKIYLKELNKKLKNIQIIHIQC---VPNNFDARLNCIQRTYVYFFINKN----- 112 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 + M A + +G H+F+ F +S IRTI F++ N N Sbjct: 113 -----------YNITKMNEATKIFLGEHNFSNFCKKRKNNTSFIRTIHKFEIKNIDQNFY 161 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 ++ SFL+ QIR V +L LVG + D++ L+ + + +A GL Sbjct: 162 YFKIKGTSFLYNQIRHMVAALFLVGKNQLDGQDIKSMLENNSIKNKNYKIADECGLLLY 220 >gi|242062120|ref|XP_002452349.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] gi|241932180|gb|EES05325.1| hypothetical protein SORBIDRAFT_04g024110 [Sorghum bicolor] Length = 201 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%) Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 +N L + ++ + +FHAR S + Y Y+I A+ L+ Sbjct: 1 MNGLLPPEIRVREISAARP--EFHARTSTKSKVYRYKIYNEAIMDPFHNRYAYHSAYKLN 58 Query: 139 CENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHT 196 M+ AA + VG HDFT+F + + + + I FDV G ++++ V FL+ Sbjct: 59 PHAMQEAANYFVGTHDFTSFANAAHNDRERRSTKKITRFDVTEMGAVLQLEVEGTGFLYR 118 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL---APPEGLYFDSVEY 246 Q+R+ V L VG + + +DRKE + APP GL SV Y Sbjct: 119 QVRNMVALLLQVGKEALPPDIVPAIIAVRDRKELAKVALSAPPHGLCLMSVNY 171 >gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 345 Score = 77.6 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 16/254 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGE------IVVVHGAGRTDSG 54 ++ Y G+ Y G Q+ + +++ + +A+ ++ + + A RTD+G Sbjct: 29 IILLYRYIGTQYHGLQQNIDTHTVEKELFQALISAGFLSDQANCNLNRIKWSEASRTDAG 88 Query: 55 VHALRQVAHFDLV--REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 VHA QV F + + +N L + I I+ + +QF+A+ A R+Y Sbjct: 89 VHACAQVLSFKASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQFYAQKFAESRNY 148 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + + T + +L L + + + S+ Sbjct: 149 NFLLPTNAFSSNSIEHLNYLRTSILPLFIGWLNYHNFTSNKSASNPSSMRKIDVFTFTDP 208 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + F SF+ QIR + ++ + ++++ L + Sbjct: 209 FEVEGVEFVLFTI---HGESFMLNQIRKMIATVISASHNYIGAEEVKRCLS--EEGWSIK 263 Query: 233 LAPPEGLYFDSVEY 246 + P +GL D V+Y Sbjct: 264 MCPGDGLMLDHVDY 277 >gi|242062118|ref|XP_002452348.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] gi|241932179|gb|EES05324.1| hypothetical protein SORBIDRAFT_04g024105 [Sorghum bicolor] Length = 90 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTGEIVVVHGAGRTDSGVHAL 58 ++ M+I Y+G+ + GWQ Q + +IQ +E A+ + + + + GAGRTD+GVHA Sbjct: 28 HKWRMVIAYDGTKFKGWQYQPSIPTIQYFLEDALICITKLDRKKLCLVGAGRTDTGVHAW 87 Query: 59 RQ 60 Q Sbjct: 88 GQ 89 >gi|24215440|ref|NP_712921.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] gi|42559814|sp|Q8CXS6|TRUA_LEPIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|24196565|gb|AAN49939.1| pseudouridylate synthase [Leptospira interrogans serovar Lai str. 56601] Length = 207 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 4/158 (2%) Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV-G 151 N++ VD+ F +RFS R Y Y I+ + P K R + +D + + L Sbjct: 33 NMTEVDENFDSRFSCNSREYEYWILNTKYPRPTWKNRTFWYQHRIDVPRLEAELELLKGE 92 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI---EIRVVARSFLHTQIRSFVGSLKLV 208 + + + S +RTI + L ++++ A FLH IR G+L + Sbjct: 93 HDFRSLAKVASLKGRSTVRTILDVKLERSLELEGLLKVKIRANGFLHNMIRILTGTLLEI 152 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +GK T++ + L ++DR G PP GLYF Y Sbjct: 153 SNGKRKDTNVLEILSSKDRTIAGITLPPYGLYFIRAYY 190 >gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura] gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura] Length = 497 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 86/251 (34%), Gaps = 20/251 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q++ + +I+ + +A+ H GRTD V A Sbjct: 104 VLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 163 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV DL + P + A L L ++ K RS +Y Sbjct: 164 CQVISIDLRSKHTPDTQLE--PASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSAR- 220 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ----------ASSP 168 R + LD E MR A + LVG DF F + ++ Sbjct: 221 --FDCTSRSYRYYFPKGDLDIEAMREACKLLVGHSDFRNFCKMDVHNGVTKFIRNLQAAR 278 Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + NS ++ + + A +FL QIR + L LVG + + L + Sbjct: 279 VEPCVEMLNNSGYDMYYLEIQANAFLWHQIRCIMAVLLLVGQRRELPRIVSDLLDVETNP 338 Query: 229 ECGPLAPPEGL 239 P GL Sbjct: 339 CKPQYTPALGL 349 >gi|169849317|ref|XP_001831362.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130] gi|116507630|gb|EAU90525.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130] Length = 568 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 77/295 (26%), Gaps = 54/295 (18%) Query: 5 CMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 ++I + GSGY G Q Q + +I+G + +A+ V V + A RTD+ Sbjct: 137 ALLIGFCGSGYSGMQIQPMDSVKTIEGVLFQALVKVGAVSQDNADDPVKVALARAARTDA 196 Query: 54 GVHALRQVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ V A+N L + R Sbjct: 197 GVHAAGNVVSMKMISTIPGVPDLVAAVNEQLPPEIRFWGFVRTQNSFNARFRKYTYFFPS 256 Query: 113 LY-------------------------------RIITRQAPLALEKGRAWLIPKSLDCEN 141 E+ +D Sbjct: 257 YLLIPPKPGSGLDERLKAFNESLGDTVPRPIHPFWADAPGNSTKEEDLIRKRRWRVDSGP 316 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR---------VVARS 192 + + F + R+ F + + +S Sbjct: 317 IERLRETARRYEGTHNFHNFTVGRDFKDRSNFRFMKSITIEDPVVYGETEWISVLFHGQS 376 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 F+ QIR + L L +++ + + P P GL + ++ Sbjct: 377 FMLHQIRKMMSGLVLSCRTGAPPEVIDQLYN--EEQVFVPKMPSLGLLLEEPLFT 429 >gi|207108295|ref|ZP_03242457.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_CA4C1] Length = 122 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M + I Y+G+ + G+ +Q N +Q IE A+ G V AGRTD GVHA Q Sbjct: 1 MRCFKATIAYDGAYFLGYAKQPNKLGVQDKIESALN-ALGIKSAVIAAGRTDKGVHANNQ 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V F + W L YL I+ + +K FHARF A +R Y Y Sbjct: 60 VLSFHAPKHWNASK----LFYYLAPKLAPHIVLKKLEEKNFHARFDAQKRVYRY 109 >gi|253742628|gb|EES99427.1| Pseudouridine synthase, putative [Giardia intestinalis ATCC 50581] Length = 351 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 85/271 (31%), Gaps = 31/271 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 ++ ++I +NG+ + G Q G +++G++ + + T + + AGRTD+ Sbjct: 1 MKVALLIAFNGTAFCGNAFQPAGGLTVEGALLDGLQKLGYVKADKTIRDIGLERAGRTDA 60 Query: 54 GVHALRQVAHFDLVREWVPVILCKALN-----------------AYLKISDTISILNLSI 96 GV A + L R N + ++ Sbjct: 61 GVSAECMLYTVCLSRSIPEAPQFPLHNPRTINGLKASPLEPSSIYISAMGPATCLVFHFN 120 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA--QHLVGRHD 154 R + + R + A E LD +A + L Sbjct: 121 RVLPPQIRVLGVMTALPENFSPRHSCAAREYEYILGYNIPLDLCTKANSAAQRFLGSNSF 180 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 Q R + +V N+ VV +FL+ Q+R L + G Sbjct: 181 HNFCHWEKEQELVYNRQVYCSEVYVRENVCIFHVVGSAFLYHQVRYMASMLAHIMAGLER 240 Query: 215 STDLEKALQA---QDRKECGPLAPPEGLYFD 242 + +E L + R+ PL P + L F Sbjct: 241 ESIIEYLLTTEQLRPRR-SFPLLPSQYLTFK 270 >gi|324517253|gb|ADY46767.1| tRNA pseudouridine synthase-like protein 1 [Ascaris suum] Length = 315 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 94/288 (32%), Gaps = 43/288 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---GEIVVVHGAGRTDSGVHAL 58 RY + I Y+GS + + +G + + + GE + A RTD GVHAL Sbjct: 5 RRYLLWISYDGSRFPEMAKGGSGYGVLDFLTTILRSSFPNVGERLKSSAASRTDRGVHAL 64 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 R + E+ + K S ++ FH Sbjct: 65 RNAIIIQVPLEYGILDQRKDTLLAEWNSIAEQCKPKALQILDFHTVSPGFSARRNVSYRC 124 Query: 119 RQA--------------------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 + E+ AW++P D + A G H+ +F Sbjct: 125 YKYRVCVALTSDAWQRFKEKPSLMHYAERDYAWILPPGFDLYKAQQACSIFKGTHNMASF 184 Query: 159 -------RSIHCQASSPIRTIDH---------FDVNSFGNLIEIRVVARSFLHTQIRSFV 202 R + S IR + H ++ + +++ SFL Q+R + Sbjct: 185 FKHRERDRRKENEYPSAIRHMRHVAITGGEPRCIDDADHAFYDFSIISTSFLREQVRRMI 244 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEGLYFDSVEY 246 G + G+ + +E L+ +AP +GL+ ++V Y Sbjct: 245 GIIVAHAYGRVSRELIEWLLKNPHPTNFFTRRLLIAPAQGLFLENVVY 292 >gi|260655352|ref|ZP_05860840.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] gi|260629800|gb|EEX47994.1| tRNA pseudouridine synthase A [Jonquetella anthropi E3_33 E1] Length = 113 Score = 76.5 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 44/108 (40%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + + L GRHDF+ F +P R + G L+ + V +FL + Sbjct: 1 MDLFAAGCRLLEGRHDFSAFCRQSEVPENPWRRLYSVRFRRRGPLVVVAVCGDAFLTNMV 60 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R +G+L V GK + L L+ R APP GL F V Y Sbjct: 61 RIMMGNLDDVSRGKRSLDWLAGLLEGGRRSSSAMTAPPSGLTFWRVGY 108 >gi|167948001|ref|ZP_02535075.1| tRNA pseudouridine synthase A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 67 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 38/64 (59%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I I V A +FLH +R+ G L +G GK + E+ LQ +DR++ G APP GLY Sbjct: 1 MIAIEVHANAFLHHMVRNLAGVLMAIGQGKQEVSWAEEILQLRDRRKGGVTAPPHGLYLT 60 Query: 243 SVEY 246 V+Y Sbjct: 61 KVDY 64 >gi|315124345|ref|YP_004066349.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018067|gb|ADT66160.1| tRNA pseudouridine synthase A [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 178 Score = 76.1 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 4/182 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++ +I Y+GS + G Q + +Q ++ A+ + G + + A RTD GVHA V Sbjct: 1 MKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHL-GIVSPLLMASRTDKGVHASYAV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 A + + + L L I I + +S YR I + Sbjct: 60 ASVEC---GDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVRFDVKSREYRYIFSHS 116 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + D + VG+ D F + +R I ++ Sbjct: 117 SYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGDNKTTLREIFIARAYAYK 176 Query: 182 NL 183 Sbjct: 177 AF 178 >gi|332520423|ref|ZP_08396885.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] gi|332043776|gb|EGI79971.1| Pseudouridine synthase I, TruA, alpha/beta domain [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 76.1 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 12/217 (5%) Query: 36 FLVTGEIVVVHGAGRTDSGVHALRQVAH-FDLVREWVPVILCKALNAYLKISDTISILNL 94 F++ G+ +GRTD+ V A F K N L I L + Sbjct: 8 FILEGKRFKSLASGRTDAMVSAEETAIELFLYEPIEDQKAFLKLFNTNL--PQDIRALEI 65 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 + VD +F+ + + Y+Y I LD E M+I A+ G H Sbjct: 66 TEVDAKFNIINNPKVKEYIYLFAFGDKFHPFCAPILTTILDDLDVEIMKIGAKLFEGEHY 125 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNL---------IEIRVVARSFLHTQIRSFVGSL 205 T+ R I ++ +RV + F+ QIR +G+L Sbjct: 126 LKTYCYKPSNNGIYTREILTCEIVENTIYTANFFPKKSYLLRVRGKGFMRNQIRLMMGTL 185 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +G GK T D++ +L+ + + +AP GL Sbjct: 186 IDLGKGKLTLEDIKASLEPDNTIKMEYIAPASGLILK 222 >gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii] Length = 363 Score = 76.1 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 82/308 (26%), Gaps = 65/308 (21%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y+G GY G QR K +I+G +E+A+F + A RTD Sbjct: 1 RKIAIFVSYSGYGYQGMQRNKGCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + +N++L + R Y Sbjct: 61 KGVSAAGQVVSG--RFFVDPPGFVERVNSHLPKQIRVLGFTRVTGTFSAKNLCDRRRYEY 118 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 + + + D I ++ + TT + + T Sbjct: 119 VLPVFALDPASHRVESPTIEAANPGDNLGEAITSEDVEEDTTSTTGTTTGRFTPTCTCTS 178 Query: 173 DHFDVNSFGNLIE--------IRVVARSFLHTQIRSF----------------------- 201 + E V + H Sbjct: 179 SDLETGFTFGDEERAKLTKILQNYVGTRYFHNFTCRVKPEDPSTQRYITSYEAGEVFTIQ 238 Query: 202 ----------------------VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 +G V G T E+A + +D K P+AP GL Sbjct: 239 GCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFR-RDTKIGVPMAPELGL 297 Query: 240 YFDSVEYS 247 + D Y+ Sbjct: 298 FLDECLYT 305 >gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1] Length = 339 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 82/210 (39%), Gaps = 7/210 (3%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI-FLVTGEIVVVHGAGRTDSGVHALRQVA 62 + I Y+G Y G Q +I G +E A+ GE + AGRTD+GV A+ +A Sbjct: 61 IALKISYDGRRYSGVSPQSGRETIGGYLEYALKSTRLGEK--LVYAGRTDAGVSAIGMIA 118 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 L A+ ++ + + + + + + Sbjct: 119 SGVLTSRIEMPNRSYAVAEDDYKEYKYDVMLNNHLPPDIRVV----GWAPVPDTFSARFT 174 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 + R + K LD + M AA + G F F + + RT+D V G+ Sbjct: 175 CIQRQYRYYFHKKGLDIDRMSKAASEIKGMSSFYCFSKHSDKNARYERTLDECRVVDDGD 234 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 L + + AR+FLH +R V ++K G G+ Sbjct: 235 LYYLDIRARAFLHNMVRKIVWAIKKSGRGE 264 >gi|227497212|ref|ZP_03927460.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] gi|226833297|gb|EEH65680.1| pseudouridylate synthase [Actinomyces urogenitalis DSM 15434] Length = 229 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 12/163 (7%) Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW------LIPKSLDCENMRIAAQH 148 V F ARFSA+ R Y+YRI + ++LD E+M ++A+ Sbjct: 39 RRVPADFDARFSALERRYVYRIDDGAPSQGRRAYDPCRRGQVLWVGQALDVESMALSARG 98 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVN-----SFGNLIEIRVVARSFLHTQIRSFVG 203 L+G HDF ++ A++ RT+ D L+ + VVA +F H+ +RS VG Sbjct: 99 LLGEHDFLSYCKPREGATTI-RTLRRLDWQRASSGPDAGLVTLTVVADAFCHSMVRSLVG 157 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + VG G+ + + L A+ R + P+APP GL + V Y Sbjct: 158 AGLAVGQGRQPVSWPARLLAARSRDQAAPVAPPYGLTLEEVVY 200 >gi|74191686|dbj|BAE30412.1| unnamed protein product [Mus musculus] Length = 280 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 104/265 (39%), Gaps = 51/265 (19%) Query: 32 EKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-----KALNAYLKI 85 ++A + + V + RTD+GVHAL AH D+ R KALN +LK Sbjct: 10 QEAAKRLNSVDPVRFTISSRTDAGVHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKH 69 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK-----SLDCE 140 +L V FHAR +A R+Y YR+ T + + LD Sbjct: 70 PAI-RVLKAFRVPNDFHARHAATSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMA 128 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH-------------FDVNSFGNLIEIR 187 M+ AAQHL+G HDF+ F+S ++ +RT+ + + + Sbjct: 129 AMQEAAQHLLGTHDFSAFQSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLE 188 Query: 188 VVARSFLHT------------------------QIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++SFL+ Q+R L VG G T ++ L+ Sbjct: 189 FESQSFLYRQVGCLNPHRMGSGRHTCDNLSSLLQVRRMTAVLVAVGLGILAPTQVKVILE 248 Query: 224 AQDR--KECGPLAPPEGLYFDSVEY 246 +QD K +AP GL+ SV Y Sbjct: 249 SQDPLGKYQARVAPARGLFLKSVLY 273 >gi|16082568|ref|NP_394390.1| tRNA pseudouridine synthase A [Thermoplasma acidophilum DSM 1728] gi|24212586|sp|Q9HJN5|TRUA_THEAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I Length = 252 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 35/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 1 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 59 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + I + + + V F+ R + Y + Sbjct: 60 V--FSLETGRSPEAVAGLINSRIDH---IYVHSYAEVPDDFNPRHCTFKTYRYYILRQDL 114 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++L+ I R + + + +RTI + + Sbjct: 115 DCISLDINLGKFIGTHDFR-------------------RFVRADSRNTVRTIINASCKND 155 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKL-VGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L+ + ARSFL QIR+ V + +G + E+ +A + L Sbjct: 156 NGLLYLEFSARSFLWNQIRTMVAFILDNIGVETDPFSTSERY---------PRVARAQNL 206 Query: 240 YFDSVEY 246 + Y Sbjct: 207 LLWDIYY 213 >gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii Nc14] Length = 585 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 82/310 (26%), Gaps = 71/310 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 R ++ YNGS Y G Q N +I+ I KA++ + + + RTD Sbjct: 78 RRVAIVAGYNGSDYHGVQLNPNVPTIEDEIRKAMYHIGALRASNFQDLNKIDWSRSSRTD 137 Query: 53 SGVHALRQVA--------HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 GVHA V L +ALN L + I + Sbjct: 138 KGVHASTIVFAGKLLLNEDVIDPVTGRVRGLTRALNENLPPNIRIFSVTRVCNSFNARTE 197 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKS----------------LDCENMRIAAQH 148 + Y + A E + + D N + H Sbjct: 198 CALREYEYFLPLAFLSASCITENRQKMRGQMNVMVQGFLSALEQYEGIHDFHNYTRSRSH 257 Query: 149 LV-------------------------------------GRHDFTTFRSIHCQASSPIRT 171 R + + Sbjct: 258 FYKLHEKKNQKFLERKSAAAHGDTLSDSLGGNSDLTSPFDTASKFRPRLPRHRRAVYQCR 317 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + +++ + ++FL QIR +G +ST E +L D+ Sbjct: 318 GSLIEDFYGEPYVKVHITGQAFLLHQIRCMIGGAISFATDAISSTVFEASL-YTDQIVRI 376 Query: 232 PLAPPEGLYF 241 P+AP EGL Sbjct: 377 PIAPAEGLLL 386 >gi|18376136|emb|CAD21201.1| related to pseudouridine synthase 3 [Neurospora crassa] Length = 669 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 93/342 (27%), Gaps = 100/342 (29%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFL---VTGE--------IVVVHGAGR 50 + Y G Y G++ Q + SI+ + KA+ + E GR Sbjct: 142 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKCGR 201 Query: 51 TDSGVHALRQVAHF---------------------------------------------- 64 TD GV A QV Sbjct: 202 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVDHQ 261 Query: 65 --DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + C+ LN L I + F ARFS R Y Y Sbjct: 262 KPEWDPIADEIPYCRVLNRLLPPDIRIMAWAP-DLPPNFSARFSCRERQYRYFFTQPAFA 320 Query: 123 LALEK---------GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRT 171 ++ LD + MR AA+ G HDF F I Q ++ R Sbjct: 321 PMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRR 380 Query: 172 IDHFDVN-------------------------SFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + D+ + V +FL QIR V L Sbjct: 381 VFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVLF 440 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 LVG G + +++ L + RK +A L + Sbjct: 441 LVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 482 >gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665218|emb|CAZ35978.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 369 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 22/255 (8%) Query: 10 YNGSGYFGWQRQKNGSSIQGSIEKAIFL------VTGEI---VVVHGAGRTDSGVHALRQ 60 Y+G GY+G QR +I+G + KA+F +T E V A +TD V AL Q Sbjct: 2 YSGWGYYGMQRCPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQ 61 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY---LYRII 117 V L + + LN L + + + ++ + Y + + Sbjct: 62 VCSMQLKEDTDLLSK---LNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPTFALS 118 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + L + + + R+ ++ + + S R I + Sbjct: 119 PATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFTSGRLVTDRSCSRYIISAEC 178 Query: 178 NSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 IR+ +SF+ QIR +G V G T + + ++ R P Sbjct: 179 MPTFLLGEHQYTIIRIAGQSFMLHQIRKMIGLALAVLRGYAT-EAVFDIVFSKAR-IDIP 236 Query: 233 LAPPEGLYFDSVEYS 247 AP GL + V++S Sbjct: 237 KAPGLGLMLNQVDFS 251 >gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis] gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis] Length = 398 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 77/273 (28%), Gaps = 36/273 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++++ ++ +A+ E H GRTD GV A Sbjct: 4 VALRFLYLGWNYDGYVVQEDTANTVEAALFQALQRTRLLDLRETSNYHRCGRTDKGVSAF 63 Query: 59 RQVAHFDLVRE-----------------------WVPVILCKALNAYLKISDTISILNLS 95 QV DL + K LN L + + Sbjct: 64 SQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVLPPDIRVLAWAPA 123 Query: 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDF 155 A Y E + + + Sbjct: 124 EPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKLLVGEHDFRNLCKMDVGNGVTRYVRR 183 Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++ +S ++ + +V ++FL Q+R V L LVG G Sbjct: 184 ILSTELYDGEPEGDG------GSSGYQMLCLEIVGQAFLWHQVRCIVAILLLVGQGLEEP 237 Query: 216 TDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + K L +A K +A L ++ Sbjct: 238 EVVSKLLDVEAHPCKPQYGMASEIPLVLYDCQF 270 >gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium castaneum] Length = 275 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 76/225 (33%), Gaps = 18/225 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++I+ + A+ H GRTD GV +L Sbjct: 58 VLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKGVISL 117 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 ++ D + CK LN L + ARF R+Y Y Sbjct: 118 DLRSNGD--DFESEINYCKILNRVLPENIQFVAWCPVESAFS--ARFDCKNRTYKYFFPK 173 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + K A + + D N + + + + I F + Sbjct: 174 SNLDIDAMKIAANYLVGTHDFRNFCKMDVN---------NGVVEFKRNILSVDISLFQED 224 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ + + +FL QIR VG L LVG GK + L Sbjct: 225 ERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLD 269 >gi|85083865|ref|XP_957207.1| hypothetical protein NCU01784 [Neurospora crassa OR74A] gi|28918294|gb|EAA27971.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 608 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 93/342 (27%), Gaps = 100/342 (29%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFL---VTGE--------IVVVHGAGR 50 + Y G Y G++ Q + SI+ + KA+ + E GR Sbjct: 81 IALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKCGR 140 Query: 51 TDSGVHALRQVAHF---------------------------------------------- 64 TD GV A QV Sbjct: 141 TDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVDHQ 200 Query: 65 --DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + + C+ LN L I + F ARFS R Y Y Sbjct: 201 KPEWDPIADEIPYCRVLNRLLPPDIRIMAWAP-DLPPNFSARFSCRERQYRYFFTQPAFA 259 Query: 123 LALEK---------GRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRT 171 ++ LD + MR AA+ G HDF F I Q ++ R Sbjct: 260 PMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRR 319 Query: 172 IDHFDVN-------------------------SFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + D+ + V +FL QIR V L Sbjct: 320 VFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVLF 379 Query: 207 LVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 LVG G + +++ L + RK +A L + Sbjct: 380 LVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIF 421 >gi|302686228|ref|XP_003032794.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8] gi|300106488|gb|EFI97891.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8] Length = 561 Score = 75.7 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 80/298 (26%), Gaps = 57/298 (19%) Query: 5 CMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSG 54 ++I + GSGY G Q Q +I+ + A V V + A RTD+G Sbjct: 133 AVLIGFCGSGYNGMQIQKPPAKTIENELFDAFVRVGAVSRDNSDDPVKVGLKRAARTDAG 192 Query: 55 VHALRQVAHF------------------DLVREWVPVILCKALNAYLKISDTISILNLSI 96 VHA + +L + + N++ S Sbjct: 193 VHAAGNLVSLKLITAIPGVPDLVARVNEELPPQIRMWGFTRVTNSFEARQMCDSRKYTYF 252 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG----- 151 ++ + + + D + + L Sbjct: 253 FPSYMLIPPKPGTGNHTNLQQFCEDAPVPALDHPFWQGHTEDDPETEMQRKRLWRLPSDK 312 Query: 152 --------------RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV-----VARS 192 + Q S +R + ++ + +S Sbjct: 313 LEALRRTAEKFEGTHNFHNFTVGRTFQDRSCMRYMKKIEIADPVVYGDTEWIAVTLHGQS 372 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 F+ QIR + +L L ++ +++ A R P P GL + Y+ Sbjct: 373 FMLHQIRKMMSALVLSVRNDTPASVMDELYGA--RTSFIPKMPSLGLLLEHPIFDSYN 428 >gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens] Length = 499 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 13/151 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +I+ Y G+ Y G QR +I+G +E+A+F V A RTD Sbjct: 57 RKVALILAYCGAAYQGMQRNPGAITIEGELEQALFRADAIAECNFGDMRKVDWMRAARTD 116 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ Q+ LV + + + +N +L I + + V F+A+ +R Y Sbjct: 117 KGVSAIGQIVSARLVIDPPGL--VERVNQHL--PKDIRVFGYTRVTSNFNAKQMCDKRRY 172 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 Y + R + S EN+R Sbjct: 173 EYLVPVFAFNPHAHHDRETMQMWSDRKENVR 203 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 ++ + T + VV +SF+ QIR +G+ Sbjct: 331 TRNYHNFTARIKPEDPSAKRYIISFTAGKVIEVQGMQFVPCTVVGQSFMLHQIRKMIGTA 390 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + G + ++ ALQ+++ P+AP GL+ D YS Sbjct: 391 IAIMRGCVPDSIIDFALQSKN-DVNTPMAPELGLFLDECFYS 431 >gi|10640247|emb|CAC12061.1| tRNA-pseudouridine synthase I related protein [Thermoplasma acidophilum] Length = 257 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 86/247 (34%), Gaps = 35/247 (14%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M Y Y GS + G+QR S++ +I + +G + A RTD V AL Sbjct: 6 MTNYAFKFGYEGSYFTGFQRGNGDHSVEDTIIDTL-KASGFDYAIKAAARTDRYVSALSN 64 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V F L P + +N+ + I + + + V F+ R + Y + Sbjct: 65 V--FSLETGRSPEAVAGLINSRIDH---IYVHSYAEVPDDFNPRHCTFKTYRYYILRQDL 119 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 ++L+ I R + + + +RTI + + Sbjct: 120 DCISLDINLGKFIGTHDFR-------------------RFVRADSRNTVRTIINASCKND 160 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKL-VGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 L+ + ARSFL QIR+ V + +G + E+ +A + L Sbjct: 161 NGLLYLEFSARSFLWNQIRTMVAFILDNIGVETDPFSTSERY---------PRVARAQNL 211 Query: 240 YFDSVEY 246 + Y Sbjct: 212 LLWDIYY 218 >gi|170086730|ref|XP_001874588.1| predicted protein [Laccaria bicolor S238N-H82] gi|164649788|gb|EDR14029.1| predicted protein [Laccaria bicolor S238N-H82] Length = 525 Score = 75.3 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 82/299 (27%), Gaps = 55/299 (18%) Query: 2 IRY-----CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHG 47 RY +++ + GSGY G Q + +I+G++ A+ V V + Sbjct: 93 PRYPKRQCALLVGFCGSGYSGMQMYGHTRTIEGALFGALVKVGAVSQDNADDPVKVALAR 152 Query: 48 AGRTDSGVHALRQVAHFDLVRE---------------------WVPVILCKALNAYLKIS 86 A RTD+GVHA + ++ W V + NA L Sbjct: 153 AARTDAGVHAAGNLVSLKMIITVPGIKDLVARINEELPPEIRLWGYVRTQNSFNARLVCD 212 Query: 87 -----DTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 + S + + + E Sbjct: 213 SRKYTYFFPTYLMIPPKPGTGLHRVLQLPSQPHSFWEGAISDSFQDDLRRKRCWRTGQEQ 272 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV---------NSFGNLIEIRVVARS 192 ++ + G F + R+ F I + +S Sbjct: 273 VQKLRELAKGYEGTHNFHNFTVGREFKERSNHRFMKQIEVSDPVVYGDTEWISVMFHGQS 332 Query: 193 FLHTQIRS-FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 F+ Q+R + L + + + +++ R P P GL + Y+ Sbjct: 333 FMLHQVRRLMMSMLVMTCRTETSPQIIDEL--YGPRNVFVPKMPSLGLLLEHPLFHSYN 389 >gi|71022667|ref|XP_761563.1| hypothetical protein UM05416.1 [Ustilago maydis 521] gi|46101432|gb|EAK86665.1| hypothetical protein UM05416.1 [Ustilago maydis 521] Length = 615 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 90/313 (28%), Gaps = 76/313 (24%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + + Y G GY G Q +I+G I A V V + A RTD Sbjct: 121 RKVAVKFGYCGIGYSGLQINPGVKTIEGDIFDAFCTAGAVSSDNAVNPNKVGLQRAARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKAL----NAYLKISDTISILNLSIVDKQFHARFSAI 108 GVHA + L+ + + + L N L I I ++ V F+AR S Sbjct: 181 RGVHAAGNLLSLKLILQPQGLKPGETLVDKVNELL--PPFIRIWGVTRVQNGFNARQSCD 238 Query: 109 RRSYLYRIITRQAPLALEKGRAWLI------------------------PKSLDCENMRI 144 R Y Y + T + + +D + Sbjct: 239 SRMYEYLLPTYVFIPPKPGSTMHDMLVRIRQQELARLSESEAHVSTTCLDEIIDHPFWKS 298 Query: 145 A------------------------------AQHLVGRHDFTTFRSIHCQASSPIR---- 170 + L + + + S R Sbjct: 299 HGTTSEFSVDMAAKKQYRLTPAHLAKIRSIFNRFLGSHNFYNFTVGKEFRDRSCQRFMKK 358 Query: 171 -TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE 229 TI + + I+ +SF+ QIR +G L L+G +++ + Sbjct: 359 LTISEPKMIQGVEWLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAERLVDECF--GPARV 416 Query: 230 CGPLAPPEGLYFD 242 P AP GL + Sbjct: 417 HIPKAPGLGLLLE 429 >gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana] Length = 442 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 81/295 (27%), Gaps = 69/295 (23%) Query: 2 IRY-CMIIEYNGSGYFGW----QRQKNGSSIQGSIEKAIFLV-----TGEIVVVHGAGRT 51 RY + I Y G ++G+ Q + SI+ + KA+ + GRT Sbjct: 89 KRYVALKIMYFGKRFYGFSAEAQMEP---SIESEVFKALERTRLLVGDKKDSCYSRCGRT 145 Query: 52 DSGVHALRQVAHFDL-------------------------------------------VR 68 D GV + Q + L Sbjct: 146 DKGVSSTGQFKNQFLIVLMFFQNPVMGAFPNVYKVIALFLRSRLKSPPGDSKAQVNGRTG 205 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E + LN L D I ++ S FHARFS R Y Y + L+ Sbjct: 206 ERPEYDYVRVLNRAL--PDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDF 263 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 D N + + + L + Sbjct: 264 AGKKFIGEHDFRN-------FCKMDVANVHCYTRRVTFFEVSPCQNS--HEGDQLCTFTM 314 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYF 241 +FL QIR V L ++G G + ++ L + RK LA L Sbjct: 315 RGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVL 369 >gi|297279170|ref|XP_001093509.2| PREDICTED: hypothetical protein LOC705127 [Macaca mulatta] Length = 511 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 104/264 (39%), Gaps = 60/264 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 RY + +Y G+ + G ++++G+ ++AI VT GR V Sbjct: 269 RYLVYFQYVGTDFNG------VAAVRGT-QRAIGEVTPGQT-----GRVVPPVS------ 310 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 + L A+ V FHAR +A R+YLYR++T Sbjct: 311 ---------LTCCHRVLRAF-------------RVPSDFHARHAATSRTYLYRLVTGCHR 348 Query: 123 LALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH--- 174 LA + LD M+ AAQHL+G HDF+ F+S SP+RT+ Sbjct: 349 LAELPVFERNLCWTLQADCLDVAAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSV 408 Query: 175 ----------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 + + + ++SFL+ Q+R L VG G ++ L++ Sbjct: 409 SPGQASPLVTPEESRKLQFWSLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILES 468 Query: 225 QDR--KECGPLAPPEGLYFDSVEY 246 QD K +AP GL+ SV Y Sbjct: 469 QDPLGKHQARVAPAHGLFLKSVLY 492 >gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe 972h-] gi|74676082|sp|O74451|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe] Length = 413 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 83/286 (29%), Gaps = 51/286 (17%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 ++ Y G+G+ G Q N +IQ ++ +A V + + + + A RTD GVH Sbjct: 41 CVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVH 100 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL--- 113 A+ V ++ + +N L + + + H + Y Sbjct: 101 AIVNVLGLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPV 160 Query: 114 -------------------------------YRIITRQAPLALEKGRAWLIPKSLDCENM 142 + + + + Sbjct: 161 SSLLTPRPCTLEAYVIAKASEKAFPINETLSHLANLSKQDCVANSLSEPFRLSKPKLDFL 220 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTI-------DHFDVNSFGNLIEIRVVARSFLH 195 + A G H F ++ + + + R + +++ +SF+ Sbjct: 221 KHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNLHIDKLNRQWVKLIFHGQSFMK 280 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 QIR VG L + W + L R P AP E L Sbjct: 281 HQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIR-IPRAPAEFLLL 325 >gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group] Length = 403 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 74/246 (30%), Gaps = 33/246 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDN----------------KSGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + A D N + Sbjct: 198 KGDLNISEMQKAALKFIGEHDYRN-------FCKMDAANVSNYRRHITDFN--ISAYDQR 248 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAP 235 +++ L I + +FL Q+R V L L+G G + ++ L RK +A Sbjct: 249 SNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLESPCIVDSLLDITKTPRKPQYKMAS 308 Query: 236 PEGLYF 241 L Sbjct: 309 EIPLIL 314 >gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500] Length = 1052 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 87/287 (30%), Gaps = 52/287 (18%) Query: 2 IRY-CMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL------VTGEIVVVHG-AGRTD 52 RY + + Y G Y G+ Q+ +I+G + +A+ + + +GRTD Sbjct: 766 KRYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQKTCLINDIKNCNYSKYALSGRTD 825 Query: 53 SGVHALRQVAHFDLVRE-------------------------------WVPVILCKALNA 81 GV A QV + K LN Sbjct: 826 KGVSAFGQVISLYVRSNLTEGNDLIPPTVIDDEAIAKKKANLLKNKKTHEEFQFVKMLNG 885 Query: 82 YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCEN 141 L I +L S + F+ARFS + R+Y Y L L K D N Sbjct: 886 VL--PPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEAGKSYIGEHDFSN 943 Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 D + +S S S + + +FL QIR Sbjct: 944 FCKI--------DLESVKSFTRVILSFDIQPVESGDFSTSGMYVATICGYAFLWHQIRCM 995 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 + L L+G K+ +T + L P +A L Y Sbjct: 996 MAMLFLIGQKKFPTTIIADLLDLSKGIVKPPYEMASEVPLVLFDCGY 1042 >gi|224011902|ref|XP_002294604.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969624|gb|EED87964.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 R+ + + ++G+ Y G+Q Q ++IQ IE + + V V G GRTD+GVHA Sbjct: 38 HRFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGA 97 Query: 61 VAHFDLVREWVPVILCKA 78 V DL + V +L + Sbjct: 98 VVTVDLWGKEVMELLTRR 115 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 16/160 (10%) Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 +S + A + C ++ Sbjct: 231 FVWSRYAWLIRESLDYEGMVDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPV 290 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + N + ++ + FL+ +R VG L +G + T L++ + Sbjct: 291 KVNGNDTMVPYFLQQNENSVVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCI 350 Query: 223 --------QAQDR---KECGP-----LAPPEGLYFDSVEY 246 + DR + P AP +GL D +EY Sbjct: 351 GVYDKYGAASDDRDGERMKIPVKLLETAPAKGLCLDHIEY 390 >gi|224011898|ref|XP_002294602.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969622|gb|EED87962.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 394 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQ 60 R+ + + ++G+ Y G+Q Q ++IQ IE + + V V G GRTD+GVHA Sbjct: 38 HRFAIRLSFDGTTYSGFQSQPYQNTIQDQIEHRLRNLLKRDTVRVIGWGRTDAGVHAKGA 97 Query: 61 VAHFDLVREWVPVILCKA 78 V DL + V +L + Sbjct: 98 VVTVDLWGKEVMELLTRR 115 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 16/160 (10%) Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 +S + A + C ++ Sbjct: 231 FVWSRYAWLIRESLDYEGMVDAAKMLSGEEHNYEWMCVIQEGELRNTRRTVHLNIETVPV 290 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + N + ++ + FL+ +R VG L +G + T L++ + Sbjct: 291 KVNGNDTMVPYFLQQNENSVVYKVVATSDFFLYKMVRRIVGLLVAIGKKQADLTTLKRCI 350 Query: 223 --------QAQDR---KECGP-----LAPPEGLYFDSVEY 246 + DR + P AP +GL D +EY Sbjct: 351 GVYDKYGAASDDREGERMKIPVKLLETAPAKGLCLDHIEY 390 >gi|170050837|ref|XP_001861491.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872293|gb|EDS35676.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 476 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 65/276 (23%), Positives = 103/276 (37%), Gaps = 43/276 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 M RY + + Y G+ + R ++ S++G++E A+ + + RTD+GVHAL Sbjct: 1 MNRYLINLSYVGTHFRDNGRLEDPQSVEGALEIALKKFRPVNEFKIKLSSRTDAGVHALN 60 Query: 60 QVAHFDLVREWVPVILCKALNAYLK-----ISDTISILNLSIVDKQFHARFSAIRRSYLY 114 H DL R L L I +L V FHAR A R+YLY Sbjct: 61 NAVHVDLERYNGKPYEPDKLTQGLNRTFGSQKIPIRVLRTRHVPLTFHARLCAKSRTYLY 120 Query: 115 RI----------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 R+ TR P+ ++ K+ D + ++ AA G HDF TF Sbjct: 121 RVGVLRPEFCDDPEQIHPFTRFIPIDEHDRCYFIANKNFDPDRLKRAAALCEGYHDFRTF 180 Query: 159 RSIHCQASSPIRTIDHFDV---------------------NSFGNLIEIRVVARSFLHTQ 197 +I + + +IR+ ARSFL+ Q Sbjct: 181 MAIARGNLWQQMPTYTLRRIERITVERGSSMASAFSRKLADRYYEYWDIRIKARSFLYNQ 240 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 +R VG+ + + T D+++ L + Sbjct: 241 VRRMVGAWIAAAEARITERDVQQMLTVPAKSSWSST 276 >gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 312 Score = 74.1 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 94/252 (37%), Gaps = 18/252 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHA 57 + +++ Y G + G QK N ++++ + + ++ + + RTD GV A Sbjct: 5 HNFLILLSYFGMEFNGSAYQKDNDNTVENKLLENLYKLELIDNYDTPLSRVSRTDKGVSA 64 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + L + Y + K+ ++ Sbjct: 65 RINGINLRLNIK------------YENVPIFEIEKKYVKELKKKLKNIHIHDIKHVSNTF 112 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + + I K+ + E M+ AA+ +G HDF+ +S RT+ FD+ Sbjct: 113 DARLNCIQRTYVYFFINKNYNIEKMKKAAKLFIGEHDFSNCCKKGKNVTSNRRTVLKFDI 172 Query: 178 NSFG-NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAP 235 + + ++ SFL+ QIR V L LVG G + D+ L +++ +A Sbjct: 173 RNIDKHFYYFKIKGISFLYNQIRHMVAILFLVGKGLLDNNDVNNILNNTSTKRKNYHIAD 232 Query: 236 PEGLYFDSVEYS 247 GL S +++ Sbjct: 233 ENGLLLYSFKFN 244 >gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group] Length = 403 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 74/246 (30%), Gaps = 33/246 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDN----------------KSGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + A D N + Sbjct: 198 KGDLNISEMQKAALKFIGEHDYRN-------FCKMDAANVSNYRRHITDFN--ISAYDQR 248 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAP 235 +++ L I + +FL Q+R V L L+G G T ++ L RK +A Sbjct: 249 SNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQYKMAS 308 Query: 236 PEGLYF 241 L Sbjct: 309 EIPLIL 314 >gi|257076635|ref|ZP_05570996.1| tRNA pseudouridine synthase A [Ferroplasma acidarmanus fer1] Length = 250 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 37/245 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + Y + Y+G+ + G+QR +S++ SI K + G + A RTD V A V Sbjct: 1 MYYLIKYGYDGTSFTGFQRGNGENSVEDSIIKILKK-YGIGNNIESAARTDRYVSARGNV 59 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 D V+ LNA + + + S +D+ + R ++++ Sbjct: 60 MLVDTDTNIGNVMGI--LNARIPG---MFFYSYSALDRYLNPRHNSMK------------ 102 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 +++I +++D + VG+HDF F + + +RTI + ++ Sbjct: 103 ------QYSYIITENIDISRVMETLGEFVGQHDFVNFC--KLDSRNTVRTIKSINYSTRN 154 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + RSF+ QIRS + + GK LE + LA PE L Sbjct: 155 GFYIINIQGRSFVWHQIRSMMAFALM---GKKHPFSLE--------NKFTYLASPEPLVL 203 Query: 242 DSVEY 246 + Y Sbjct: 204 MDISY 208 >gi|84996449|ref|XP_952946.1| tRNA-pseudouridine synthase I [Theileria annulata strain Ankara] gi|65303943|emb|CAI76322.1| tRNA-pseudouridine synthase I, putative [Theileria annulata] Length = 480 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 57/351 (16%), Positives = 91/351 (25%), Gaps = 107/351 (30%) Query: 2 IRYCMIIEYNGSGYFGWQ----------RQKN-----GSSIQGSIEKAIFLVTG------ 40 +I+ Y+G+ Y G Q N +SI + K I ++ G Sbjct: 107 TNLILIVSYDGTFYHGMAGPMIFLKDYGIQVNFDNDKVNSINNELLKTITMLHGYFGNKR 166 Query: 41 -------------------------------------------EIVVVHGAGRTDSGVHA 57 + + RTD GVH+ Sbjct: 167 KLKKKNLRELSKKIKSKDEDSTYINGYNDEENTSSPDLLEEYARRFTLITSSRTDRGVHS 226 Query: 58 L-----------------RQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDK 99 + Q FD + +LN L ++ + D Sbjct: 227 MGTVSLINLVSEIYLFQACQYLSFDKKFNFDSLEEFQDSLNKRLPSDIRVTSVITPPHD- 285 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR----------IAAQHL 149 +F+ R I +SY Y++ P E+ W I N + + L Sbjct: 286 EFNVRHHNIGKSYSYKVDLSPNPSLFERNHYWQIMSDTHFVNTLLRKYRDVKAPFSFEKL 345 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE--------------IRVVARSFLH 195 + R + + I I V FL+ Sbjct: 346 KEAARVFHGKHNFEAFRKNCRGNERDKIIDPICTIHSIEFVNIPQDKKVEIIVNGDRFLY 405 Query: 196 TQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R V L L G +++AL P AP GLY V + Sbjct: 406 KMVRCIVSHLILAGFNVIKPDQIKRALDNATEIPNIPYAPAHGLYLKKVFF 456 >gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum] Length = 483 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 95/306 (31%), Gaps = 69/306 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS----SIQGSIEKAIFL--------VTGEIVVVHG---- 47 + I Y G Y G++ N +I+ I KA+ + GE V G Sbjct: 26 IALRIAYLGGNYTGFEYHANSPNTTNTIEEHIFKALLKARLVPCNGIEGEEETVLGWPGD 85 Query: 48 -------AGRTDSGVHALRQVAHFDL----------------------------VREWVP 72 GRTD+GV A QV + E Sbjct: 86 EVAEYSKCGRTDTGVSAFGQVIGVRVRSNRPLPKKPTDDVAEEGGEEGKEKTEFDDEKDE 145 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 + + LN L + F ARF+ +R Y Y Sbjct: 146 LPYPQILNRLLPKDIRVLAWCPHPPPT-FSARFNCQQRHYRYFFTNPAI-----VPSPNS 199 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDHFD--------VNSFGN 182 +LD + MR AA+ VG HDF F + Q + R I H D N+ Sbjct: 200 TVGNLDIDKMREAAKLYVGDHDFRNFCKLDASKQITRFDRVIHHADIVELPQSSPNNNPK 259 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLY 240 + + +FL Q+R + L L+ G + + + L RK +A L Sbjct: 260 VYYFELHGSAFLWHQVRHMIAILFLIAQGLEQPSLVTEMLDISKNPRKPMYDIANDRALV 319 Query: 241 FDSVEY 246 + Sbjct: 320 LWDCIF 325 >gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138] gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata] Length = 317 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 86/272 (31%), Gaps = 31/272 (11%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTDSGV 55 +++ Y G+GY G Q +I + KA+ A RTD GV Sbjct: 2 ALVLGYLGTGYQGIQYNPPAHTIDNELFKALVATNCISQSNSDDFSKSSFSRATRTDKGV 61 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL + + R VP + LN L D I I ++ V K+F+AR A R Y Y Sbjct: 62 HALTNLVALKMQRYEVPQQVKAELNEIL--PDDIRIWDVVPVKKKFNARVMAGTRHYRYV 119 Query: 116 IITRQAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 I T + + NM + + + + Sbjct: 120 IPTFLLQCGPHSDLSTSQLARFKNIWNMFLGTHNYYNFTPRRKDTNADSPQNMRHMYSIQ 179 Query: 175 FDVNSFG----NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA--QDRK 228 + I + +SFL QIR V + T + L+ D Sbjct: 180 VSDPFTIAGSTQWLSIAIHGQSFLLHQIRKMVHYALSEYHRSSSDTKSMELLETVDPDLT 239 Query: 229 EC----------GPLAPPEGLYFDSV---EYS 247 PLAP GLY Y+ Sbjct: 240 SATALDTPTEQYIPLAPAAGLYLHHPTFEGYN 271 >gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group] gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica Group] Length = 411 Score = 73.4 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 74/246 (30%), Gaps = 33/246 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 QV L L N F ARFS + R Y Y Sbjct: 154 TGQVISLFLRSNIKDAKLDVLDN----------------KSGDFLARFSCLGREYKYLFW 197 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + A D N + Sbjct: 198 KGDLNISEMQKAALKFIGEHDYRN-------FCKMDAANVSNYRRHITDFN--ISAYDQR 248 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAP 235 +++ L I + +FL Q+R V L L+G G T ++ L RK +A Sbjct: 249 SNYDELWAITIKGSAFLWHQVRCMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQYKMAS 308 Query: 236 PEGLYF 241 L Sbjct: 309 EIPLIL 314 >gi|46205610|ref|ZP_00209946.1| COG0101: Pseudouridylate synthase [Magnetospirillum magnetotacticum MS-1] Length = 193 Score = 73.4 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW-LIPKSLDCENMRIAAQHL 149 + + F ARFSA+ R+Y YR+ A + + LD M A + L Sbjct: 1 MHRAAPAPTGFDARFSALHRAYTYRVADDPAQRDPLRREWVLWNRRPLDVAAMDAAVRPL 60 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN-----LIEIRVVARSFLHTQIRSFVGS 204 +G DF +F A++ R + H + + L+ V A +F H +R+ VG+ Sbjct: 61 LGVRDFASFCKPRPGATTI-RELQHLSWSRPADGPDAGLVVAHVRADAFCHNMVRALVGA 119 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VG+G+ + L ++ R + P GL + V Y Sbjct: 120 SLAVGEGRRDVGWPAELLASRRRDAGAGVVPAHGLVLEEVTY 161 >gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 293 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 89/288 (30%), Gaps = 48/288 (16%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVH 56 ++ Y G+ Y G+Q + Q E A+ + +GRTD GVH Sbjct: 1 FLLAYVGTNYGGFQINDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGVH 60 Query: 57 ALRQVAH--FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL- 113 A QV +L+ + + +N L + + + + + +R Y+ Sbjct: 61 ACAQVVSAKVELLPDQTMAEVRDEMNTVLPDDVRVLDVVRTTRNFCAKTQRDRVRYQYMI 120 Query: 114 --YRIITRQAPLALEKGRAWLIPKSL-------------------DCENMRIAAQHLVG- 151 + L K + D + L Sbjct: 121 PSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANPMHIAKLQEA 180 Query: 152 -------RHDFTTFRSIHCQASSPIRTIDHFD------VNSFGNLIEIRVVARSFLHTQI 198 R + + R I+ F + I +V+ +SFL QI Sbjct: 181 LQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVLGQSFLLNQI 240 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 R V V G T++ +AL+ Q +AP +GL+ + Y Sbjct: 241 RKMVCMAMDVARGVVPLTNVSRALERQS-DVRINVAPAQGLFLEMSYY 287 >gi|189241446|ref|XP_973048.2| PREDICTED: similar to CG34140 CG34140-PA [Tribolium castaneum] Length = 258 Score = 73.0 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 71/219 (32%), Gaps = 28/219 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGS--------SIQGSIEKAIFLVTGE-IVVVHGAGRTDS 53 RY + Y G+ + G QRQ G ++QG +E A+ + VV+ + RTDS Sbjct: 5 RYLLHFSYIGTPFMGAQRQVTGRMPRPDDPSTVQGQLEMALKRLNPTNDPVVYLSSRTDS 64 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDT-----ISILNLSIVDKQFHARFSAI 108 GVHAL H DL R K + L I ++ V FH R +AI Sbjct: 65 GVHALNSTCHVDLYRSNELEYEPKTITICLNRYFDKNEVPIRVIKTYWVPPDFHCRHTAI 124 Query: 109 RRSYLYRI--------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 R+YLYRI + ++D + Sbjct: 125 SRTYLYRIAIAKTGVTEHATILNLLPIEEYQRCLFFYCDSFNIDEMKEAAKVFEGLHDFR 184 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 R H R + DV L F Sbjct: 185 TFMGRGSHDPDKITRRVVTRVDVCDGRALTYSSFSWPRF 223 >gi|297789719|ref|XP_002862797.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] gi|297308524|gb|EFH39055.1| hypothetical protein ARALYDRAFT_920264 [Arabidopsis lyrata subsp. lyrata] Length = 244 Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 8/191 (4%) Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 ALN L I + LS +FHARFSA + Y Y+I Sbjct: 26 WKLPTTVHVFLDSFHAALNGLL--PKDIRVRELSAAVPEFHARFSAQSKVYRYQIYNDTF 83 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS--IHCQASSPIRTIDHFDVNS 179 ++ A+ L+ MR VG HD + F + P+++I F V Sbjct: 84 MDPFQRYWAYHCAYKLNASKMRETVDLFVGMHDVSAFANATREDGVPDPLKSISRFYVIQ 143 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAP 235 G+L+++ V FL+ Q+R+ V L +G S + L+ +DR+ P Sbjct: 144 MGSLLQLEVEGSGFLYRQVRNMVALLIHIGKESLDSDIVPMILETKDRRVLAKYTTLPVP 203 Query: 236 PEGLYFDSVEY 246 P GL SV+Y Sbjct: 204 PHGLCLVSVKY 214 >gi|317498141|ref|ZP_07956443.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] gi|316894618|gb|EFV16798.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 5_1_63FAA] Length = 50 Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +R G+L VG GK D+ KAL++ R + G APP+GL+ SVEY Sbjct: 1 MVRILTGTLVEVGYGKIKPEDITKALESTKRSDAGITAPPQGLFLVSVEY 50 >gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276] gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276] Length = 511 Score = 72.6 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 79/319 (24%), Gaps = 91/319 (28%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVINLWVRSSRRRDDGGGELGDGWRDAAEPEVEKPVVVQEDGEAKGQEKK 194 Query: 67 ------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 R+ K LN+ L S + + + Y + Sbjct: 195 SKIVQPTRQPSEFPYPKLLNSVLPPSIRVLAWSPIPSSFDSRFSCTYRHYRYAFHT---- 250 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 R LD E M AQ L+G HD+ F + T Sbjct: 251 --------RPTPTSPELDLELMSQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKAWFE 302 Query: 181 --------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-----AQDR 227 ++ ++ +FL Q+R V L L+G + + L ++ Sbjct: 303 GGESQGVGEGMMVFNLIGTAFLWHQVRHIVAVLFLIGAKLEPPSIVSDLLDVERFPSKPN 362 Query: 228 KECGPLAPPEGLYFDSVEY 246 G P L Y Sbjct: 363 YTMGHPLP---LTLHHCGY 378 >gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum] Length = 365 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 25/250 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ Q++ ++I+ + A+ H GRTD + + Sbjct: 40 VLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKTCLIENRSSANYHRCGRTDKDLRSN 99 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + CK LN L + ARF R+Y Y Sbjct: 100 G-------DDFESEINYCKILNRVLPENIQFVAWCPVESAFS--ARFDCKNRTYKYFFPK 150 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + K A + + D N + + + I F + Sbjct: 151 SNLDIDAMKIAANYLVGTHDFRNFCKMD---------VNNGVVEFKRNILSVDISLFQED 201 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPP 236 ++ + + +FL QIR VG L LVG GK + L RK +A Sbjct: 202 ERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPRKPDYHMASE 261 Query: 237 EGLYFDSVEY 246 L Y Sbjct: 262 IPLNLYDCHY 271 >gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var. neoformans B-3501A] Length = 514 Score = 72.6 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 80/319 (25%), Gaps = 88/319 (27%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKGVK 194 Query: 67 ---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 R+ K LN+ L S I + + Y + Sbjct: 195 EKKSKVIQPPRQPSEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFHT- 253 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R LD E MR AQ L+G HD+ F + T Sbjct: 254 -----------RPTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKA 302 Query: 178 NSF--------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DR 227 ++ ++ +FL Q+R + L LVG + + L + Sbjct: 303 WFEGGESQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVKRFPS 362 Query: 228 KECGPLAPPEGLYFDSVEY 246 K + P L Y Sbjct: 363 KPNYTMGHPLPLTLHHCGY 381 >gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis] Length = 471 Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 90/309 (29%), Gaps = 75/309 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAI--FLVTG--EIVVVHGAGRTDSGVHAL 58 +++ Y G G+ Q N ++++ I KA+ + E GRTD V A Sbjct: 39 IALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKLIQSLETANYSRCGRTDKTVSAF 98 Query: 59 RQVAHFD----------------------------LVREWVPVILCKALNAYLKISDTIS 90 QV D + + K LN+ L I Sbjct: 99 SQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNSVL--PQEIR 156 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 +L + V++ F+AR++ R Y Y L + +L ++ + Sbjct: 157 VLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALFSNFRRGTIC 216 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSF------------------------GNLIEI 186 S R D++ L Sbjct: 217 VYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTVFDVQFTKVNAGGLNSRTLCCF 276 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE--------- 237 +VA +FL QIR + L +G+GK +E L + L P + Sbjct: 277 TIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTE-------LCPAKPQYSMVVGW 329 Query: 238 GLYFDSVEY 246 L +Y Sbjct: 330 PLVLYGCQY 338 >gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans JEC21] gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 514 Score = 72.2 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 80/319 (25%), Gaps = 88/319 (27%) Query: 4 YCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV-------TGEIVVVHGAG 49 ++I Y+G Y G Q +++ + A+ E G Sbjct: 75 IALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCG 134 Query: 50 RTDSGVHALRQVAHFDL------------------------------------------- 66 RTD GV QV + + Sbjct: 135 RTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKGVK 194 Query: 67 ---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 R+ K LN+ L S I + + Y + Sbjct: 195 EKKSKVIQPPRQPSEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFHT- 253 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 R LD E MR AQ L+G HD+ F + T Sbjct: 254 -----------RPTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKA 302 Query: 178 NSF--------GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DR 227 ++ ++ +FL Q+R + L LVG + + L + Sbjct: 303 WFEGGKSQGVGDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVKRFPS 362 Query: 228 KECGPLAPPEGLYFDSVEY 246 K + P L Y Sbjct: 363 KPNYTMGHPLPLTLHHCGY 381 >gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966] Length = 604 Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 82/275 (29%), Gaps = 54/275 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG----SSIQGSIEKAI--FLVTG-----EIVVVHGAGR 50 + + Y+G Y G Q +++ +I +A+ + + V GR Sbjct: 80 RKIALRFCYDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLVDATKSMDDVDWSRCGR 139 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKA----------------------LNAYLKISDT 88 TD+GV A QV + V + LN L + Sbjct: 140 TDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPYVATLNRLLPPTIR 199 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 I + Y + + + + LD + MR AA Sbjct: 200 IQAWSPVRPTFSARFDCVYRHYKYFFTLGAPSTLVW-QPESLSQFSGRLDLDRMRDAAAR 258 Query: 149 LVGRHDFTTFRSIHCQASSPI-------------------RTIDHFDVN-SFGNLIEIRV 188 LVG HDF + R I D + + + + + Sbjct: 259 LVGEHDFRNMCKVDASKQITNFRRRIDGASIDPVCRGWSDRPIPAPDPHSTDEPMYVLNL 318 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 +FL+ Q+R + L +VG + +++ L Sbjct: 319 RGSAFLYHQVRHIMAVLFMVGARLEDPSIVDELLN 353 >gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15] Length = 515 Score = 72.2 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 95/305 (31%), Gaps = 61/305 (20%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ T V +GRTD GV Sbjct: 83 IAIQVCYDGTEYAGLAQQPNKEYTIEELLLNALRDAALIPQYATASDVHFERSGRTDRGV 142 Query: 56 HALRQVAHFD--------------LVREWVPVILCKALNA-------------------- 81 A QV F + L Sbjct: 143 SAAGQVFSFYARTNNKAMTPQSIPVPDPRFYRDRRDGLTPPAKPNDNVDGDLVNSEKEPE 202 Query: 82 ----------------YLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 +++ +TI +L + VD+ F AR S R Y+Y + Sbjct: 203 LKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRHYIYTFGQIGSLNIR 262 Query: 126 EKGRAWLI-PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLI 184 A D N+ + + + F P + V + + Sbjct: 263 RMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFSCYLEIDGQPYECENDRMVIKENSSL 322 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFD 242 + V +FL+ QIR L +G + + L ++ K P+AP E L F+ Sbjct: 323 SLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFPGKPDYPIAPGELLLFE 382 Query: 243 SVEYS 247 EY+ Sbjct: 383 KAEYT 387 >gi|156087442|ref|XP_001611128.1| tRNA pseudouridine synthase [Babesia bovis T2Bo] gi|154798381|gb|EDO07560.1| tRNA pseudouridine synthase, putative [Babesia bovis] Length = 414 Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 81/307 (26%), Gaps = 66/307 (21%) Query: 6 MIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAI---------FLVTGEIVVVHGAGRT 51 +++ Y G+ Y G+Q Q++ +++ + A+ + + A RT Sbjct: 31 IVLSYIGTNYHGFQIQRDAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLSKASRT 90 Query: 52 DSGVHALRQVAHFDLVREW---------VPVILCKALNAYLKISDTISILNLSIVDKQFH 102 D GVHA L LN L + Sbjct: 91 DKGVHAACTYIGGRFELSHLSAGEPGISKEQCLVSRLNTVLPDDIRCFQVLRVTRGFCAR 150 Query: 103 ARFSAIRRSY-------LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD- 154 + S Y YR + + + + I + L Sbjct: 151 SMCSKRMYEYVIPLSLLRYRYVCGEDDNKRTFEKTSNLMNLHMNSRQNIHCKRLSSVALH 210 Query: 155 -----------------FTTFRSIHCQASSPIRTIDHFDVNSFGNLIE------------ 185 + + H + R Sbjct: 211 EGTTEERDVDMVLLQSILSDYCGSHDFKNFTQRQKVEEKTTQRFIHEIKVEGSESIGINA 270 Query: 186 --IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + + +SFL+ QIR +G V G ++ AL ++ PLAP EGL+ Sbjct: 271 VRVIITGQSFLYNQIRKMIGLGYAVYLGVAPRCAIKFAL-SKWHAVNTPLAPAEGLFLHH 329 Query: 244 VE---YS 247 Y+ Sbjct: 330 PYFDAYN 336 >gi|302854296|ref|XP_002958657.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300255982|gb|EFJ40260.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 188 Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 2/131 (1%) Query: 7 IIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 ++ Y+G + G+Q Q ++QG +E+ + + GA RTD G HA QV HFD Sbjct: 15 VVAYDGCEFAGFQFQAGKVRTVQGELERGAKRLFHGCSRMVGASRTDGGAHAYGQVVHFD 74 Query: 66 LV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 + N++L + L+ + H Y + + Sbjct: 75 VYGTRDSLESDALYYNSFLPPDVRVLGLSYAEDGFDSHFSSCGKTYLYKFAAGLPDPLQS 134 Query: 125 LEKGRAWLIPK 135 + + Sbjct: 135 KYRWWVYDRWC 145 >gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus] Length = 677 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 10/122 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+ Y G Q K +I+ +E A++L V AGRTD Sbjct: 191 KKVALLISYWGNNYQGLQINKGARTIEAELELALYLAGTISKDNFGNPRKVSWSRAGRTD 250 Query: 53 SGVHALRQVAHFDLVR-EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 GVHA QV L + +N YL + + R S R Sbjct: 251 KGVHAAAQVISVKLTYLNDGERETVEKINKYLPDDIRAVDIRRAPKSFDSRTRCSGRRYE 310 Query: 112 YL 113 Y+ Sbjct: 311 YI 312 Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 2/99 (2%) Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + + C+ T + I + V +SF+ QIR V S Sbjct: 517 NYHNYTNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIRKMVASTVD 576 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+ D K+ + AP +GLY + Y Sbjct: 577 RVRGQSNPEDFTKSFLPEKINLGI--APSDGLYLERPLY 613 >gi|332006581|gb|AED93964.1| tRNA pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 471 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 13/81 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGE-------------IVVVHGA 48 + + +++ YNG+ + GWQ+Q + ++QG +EK++ E V A Sbjct: 93 VNFKIVLSYNGASFDGWQKQPDLHTVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVA 152 Query: 49 GRTDSGVHALRQVAHFDLVRE 69 GRTD GV AL QV F R+ Sbjct: 153 GRTDKGVSALNQVCSFYTWRK 173 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%) Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 D ++ + +VA FL +R V + L K L+A R+ P AP Sbjct: 390 DCVEGRRVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLLEASCRRATAPPAP 449 Query: 236 PEGLYFDSVEYS 247 EGL V Y+ Sbjct: 450 SEGLCLFDVGYT 461 >gi|171689408|ref|XP_001909644.1| hypothetical protein [Podospora anserina S mat+] gi|170944666|emb|CAP70777.1| unnamed protein product [Podospora anserina S mat+] Length = 635 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 81/318 (25%), Gaps = 76/318 (23%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAI-----------FLVTGEIVVVHGAGR 50 + + Y G Y G++ N SI+ + KA+ + GR Sbjct: 133 IALKLSYLGKNYGGFEHSGYSNVPSIEEELWKALVKGCLITPADPSKIDFAPFEYSKCGR 192 Query: 51 TDSGVHALRQVAHF--------------------------------------------DL 66 TD GV A QV + Sbjct: 193 TDRGVSAFGQVISIRVRSNRPPSKSEQPAEEDVVMEGTPEQNNTPQLPGKKQQQNPQKEW 252 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAPLAL 125 + K LN L + + + + F ARFS R Y Y AP L Sbjct: 253 EDIVDEINYPKVLNRLLPPDIKVLAWAPT-LPEGFSARFSCYERQYRYFFTNPSMAPTLL 311 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH----------- 174 G + + L +F S R + Sbjct: 312 APGEKSGWLDIAAMKKAAKYFEGLHDFRNFCKVDGGKQITSFQRRIFECDIEEVEGQDLG 371 Query: 175 ----FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RK 228 + G + V +FL QIR V + VG G + + L + RK Sbjct: 372 VVNFWGGEKKGKVYYFHVRGSAFLWHQIRHMVAIVFNVGQGLERPEVVRELLDVERNGRK 431 Query: 229 ECGPLAPPEGLYFDSVEY 246 +A L + Sbjct: 432 PGYIMAEEVPLVLWDCVF 449 >gi|312374395|gb|EFR21957.1| hypothetical protein AND_15974 [Anopheles darlingi] Length = 163 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 14/130 (10%) Query: 1 MIRYCMIIEYNGSGYFGWQR-------Q-KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRT 51 M RY + + Y G+ + G QR Q K+ ++QG IE+A+ + + + RT Sbjct: 1 MNRYLINLSYIGTRFRGIQRKIDKAAGQFKDPHTVQGVIEEALLRLRPVNEPTLKLSSRT 60 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKAL-----NAYLKISDTISILNLSIVDKQFHARFS 106 D+GVHAL H DL R + A + + I++ V FHAR S Sbjct: 61 DTGVHALHNTVHVDLQRPNGKPYDEDRITQTINRACERDGHALRIISTIRVPDTFHARLS 120 Query: 107 AIRRSYLYRI 116 A R+YLYR+ Sbjct: 121 AKSRTYLYRL 130 >gi|47206562|emb|CAF94488.1| unnamed protein product [Tetraodon nigroviridis] Length = 181 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP- 232 + +E+ +RSFL+ Q+R G+L VG G+ + L++ L+A+D P Sbjct: 102 QVHYHRVIPFLELIFTSRSFLYKQVRRMTGALVAVGQGRLSVAQLKEVLEARD-SLAYPQ 160 Query: 233 --LAPPEGLYFDSVEYS 247 AP GL+ V+Y+ Sbjct: 161 GLTAPAHGLFLTRVDYT 177 >gi|47187449|emb|CAG13480.1| unnamed protein product [Tetraodon nigroviridis] Length = 97 Score = 71.1 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 10/96 (10%) Query: 3 RYCMIIEYNGSGYFGWQR----QKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHA 57 RY + +Y G+ Y G + Q S+Q +E A+ + V + + RTD+GVHA Sbjct: 1 RYLIFFQYIGTKYSGVVKVPPHQLFKKSVQDHLEDALRKLRPLNPVSLSVSSRTDAGVHA 60 Query: 58 LRQVAHFDL-----VREWVPVILCKALNAYLKISDT 88 L AHFDL + IL ALN +L+ Sbjct: 61 LCNSAHFDLQRRNDKPPFTADILVDALNYHLRTEQI 96 >gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica] Length = 307 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 79/232 (34%), Gaps = 25/232 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + ++I Y G Y G Q +I+ + +A+ + Sbjct: 81 KKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSCS 140 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A+ VA LC+ +NA+L D I + + V K F A+ Sbjct: 141 RTDKGVSAIGNVASLKCKIP---KNLCELVNAHL--PDDIRLTSFEQVTKGFCAKKRCTH 195 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLD-----CENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y T + R S + E ++ + + R Sbjct: 196 RTYSYYCPTICFGSKEDWDRPSSFRISAEKLEGVRELLKKYIGTRSYHNFTSGKRQGDES 255 Query: 165 ASSP---IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 A R + + +E+RVV +SF+ QIR VG + W Sbjct: 256 AKRHILDFRIQGDPFICNEWEYVELRVVGQSFMIHQIRKMVGLIIARAGNHW 307 >gi|322490513|emb|CBZ25774.1| tRNA pseudouridine synthase A-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 525 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 34/195 (17%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKNGSS-----------------------IQGSIEK 33 M RY + ++Y GS + GW QR +NG + + +E+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNGKNGASAGSTATAAADYGAGSRHFAKV--VLEE 187 Query: 34 AIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA----LNAYLKISDT 88 A+ + V + A ++GV R H D+ E L + + Sbjct: 188 ALAVALDVPTVSIVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRTTLWLHQRRQPL 247 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + ++ FHAR + +RR Y YRI+ R AP + G W + + LD M+ A+ Sbjct: 248 AVLSCHPCRNQDFHARHNGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARL 307 Query: 149 LVGRHDFTTFRSIHC 163 + G HD+ F Sbjct: 308 MEGTHDYGFFADSKM 322 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 9/115 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 Q ++ IRT+D +V + I I V +SFL QIR Sbjct: 386 PTFNEYGQRVITYQAKPHEYHKARTNLPTIRTLDKIEVVRQEDEILIWFVGQSFLRHQIR 445 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--------DRKECGPLAPPEGLYFDSVEY 246 + V LK G G W +L+ A Q+ R+ P AP GL VEY Sbjct: 446 NMVSVLKAGGHGLWDDQELQHAFQSGFEVSRKKFKRERLSP-APVHGLTLWDVEY 499 >gi|332862130|ref|XP_513709.3| PREDICTED: pseudouridylate synthase-like 1 [Pan troglodytes] Length = 261 Score = 70.7 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 21/189 (11%) Query: 3 RYCMIIEYNGSGYFGW------QRQKNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGV 55 RY + +Y G+ + G QR +Q +E+A + E V + RTD+GV Sbjct: 13 RYLVYFQYVGTDFNGVAAVRGTQR---AVGVQNYLEEAAERLNSVEPVRFTISSRTDAGV 69 Query: 56 HALRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 HAL AH D+ + P +L +ALN +L+ +L V FHAR++A R Sbjct: 70 HALSNAAHLDVQRRSGRPPFPPEVLAEALNTHLRHPAI-RVLRAFRVPSDFHARYAATSR 128 Query: 111 SYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 +YLYR+ T + LD M+ AAQHL+G HDF+ F+S Sbjct: 129 TYLYRLATGCHRRDELPVFERNLCWTLPADCLDVVAMQEAAQHLLGTHDFSAFQSAGSPV 188 Query: 166 SSPIRTIDH 174 SP+RT+ Sbjct: 189 PSPVRTLRR 197 >gi|118395831|ref|XP_001030261.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89284557|gb|EAR82598.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 297 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 97/249 (38%), Gaps = 27/249 (10%) Query: 20 RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 RQK +I ++++ + V + + RTD GV+A + F L R+ + + Sbjct: 22 RQKESININIKNQQSLNNFAKQEVFIKSSSRTDVGVNARKHPVQFVLQRD-----SKRGV 76 Query: 80 NAYLKISDTIS-ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA----LEKGRAWLIP 134 N YL+ + I + V +F R +++ Y++ I ++ L ++W IP Sbjct: 77 NFYLRDAGDQIAINEVYQVPMEFDVRNDCLQKEYVFYIDSQVGYNWENPLLFYKQSWCIP 136 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR----------TIDHFDVNSFGNLI 184 +D + ++ A Q +GRH+F F S + T + I Sbjct: 137 DQIDIDRLKQAFQKYLGRHNFYLFTSPEPFQTQFDLFEKELNSFEITHYPNEHFPKIQSI 196 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-------AQDRKECGPLAPPE 237 I V + FL Q+R VG L K L L + R A PE Sbjct: 197 RISVKGKGFLKYQVRYMVGIAVLYAQKKIDENYLNYLLNPTGFIPQDERRNLIRLKAKPE 256 Query: 238 GLYFDSVEY 246 GL+ V+Y Sbjct: 257 GLFLYDVQY 265 >gi|219129673|ref|XP_002185007.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403502|gb|EEC43454.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 373 Score = 70.3 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 32/209 (15%) Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + + ++ + ++ + ++ ARFSA +R+YLYRI+ Sbjct: 159 KDMRLLNIREAPHFMDNPLYDVQSTIQPNKVRWDARFSATQRTYLYRILHMCNDTDWAVP 218 Query: 129 RAWLIPKSL------DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG- 181 W + D E M+ AA++L G HDFT+FR+ C SP+ T++ V S Sbjct: 219 FEWNRSWRIRNSIPLDLEAMQRAAKYLTGTHDFTSFRASGCSRYSPVVTLNQICVQSQPY 278 Query: 182 -------------------------NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 L I SFL+ Q+R+ VG L VG G Sbjct: 279 GIAGLSGTFAKECALFGIPTTIDPLCLTTISFQGNSFLYRQVRNMVGYLVAVGKGWINCE 338 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVE 245 D L A+DR + AP GL+ V+ Sbjct: 339 DTVAVLNARDRTKAQSTAPAHGLFLVDVK 367 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 16/88 (18%) Query: 2 IRYCMIIEYNGSGYFG--WQRQ------KNG------SSIQGSIEKAIFLVTGEIV--VV 45 RY + ++Y G + G WQR NG S++G + +A+ + G + Sbjct: 8 KRYAVSLQYRGPPFLGFSWQRTQEDCILPNGTDLRGRQSVEGRLREALDKLVGRDGYDKI 67 Query: 46 HGAGRTDSGVHALRQVAHFDLVREWVPV 73 + RTD GVHAL+ H D+ + Sbjct: 68 QVSSRTDRGVHALKNTCHIDVRTSFPDE 95 >gi|322709808|gb|EFZ01383.1| putative pseudouridine synthase 3 [Metarhizium anisopliae ARSEF 23] Length = 564 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 92/338 (27%), Gaps = 96/338 (28%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFL---VTGEIVVVH--------GAGR 50 + + Y G Y G++ Q N SI+ + A+ + E + GR Sbjct: 81 IALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFDCCEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDL-------------------------------------------- 66 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGLKVRSNRPLPKKRAETDVAAAEDIALADADPQGVKQAEEEVEAQEED 200 Query: 67 ---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + LN L I S F ARFS R Y Y Sbjct: 201 KPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPP-DFSARFSCRERQYRYFFTQPAFAP 259 Query: 124 -----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFD 176 L L LD + MR AA+ G HDF F I Q ++ R I D Sbjct: 260 DPTSLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFHRRIFESD 319 Query: 177 VN--------------------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 + + + V +FL QIR V L LVG Sbjct: 320 IVEVQGAGSVMPYLQTPGFSSPGLEGSGPYPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQ 379 Query: 211 GKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 G + T + + L + +A L + Sbjct: 380 GLESPTVISELLDTAKNPGRPSYVMADEVPLVLWDCIF 417 >gi|157868264|ref|XP_001682685.1| tRNA pseudouridine synthase A-like protein [Leishmania major] gi|68126140|emb|CAJ07193.1| tRNA pseudouridine synthase A-like protein [Leishmania major strain Friedlin] Length = 525 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 34/195 (17%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSS----------------IQGSIEK 33 M RY + ++Y GS + GW QR +N G++ + +E+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNNKDAAPVGNTATAAADYGAGSRHFAKV--VLEE 187 Query: 34 AIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA----LNAYLKISDT 88 A+ + V V A ++GV R H D+ E L + + Sbjct: 188 ALGVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPL 247 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ Sbjct: 248 AVLSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARL 307 Query: 149 LVGRHDFTTFRSIHC 163 + G HD+ F Sbjct: 308 MEGTHDYGFFADSKM 322 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 9/115 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 Q ++ IRT+D +V + + I V +SFL QIR Sbjct: 386 PTFNEYGQRIITYQAKPHEYHKARTNLPTIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIR 445 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--------DRKECGPLAPPEGLYFDSVEY 246 + V LK G G W +L+ A Q+ R+ P AP GL VEY Sbjct: 446 NMVSVLKAGGHGLWDDQELQHAFQSGFEVSRKKFKRERLSP-APVHGLTLWDVEY 499 >gi|224007493|ref|XP_002292706.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971568|gb|EED89902.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 437 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 86/318 (27%), Gaps = 73/318 (22%) Query: 3 RYCMIIEYNGSGYFGWQRQKN--------------------GSSIQGSIEKAIFLVTGE- 41 + + Y G + GW+ Q++ S+QG++ + + G+ Sbjct: 120 NLKLTVAYRGLDFCGWEDQRHELYRSDASGAVKQSAVEEEVLPSVQGTLVDILDPLLGKK 179 Query: 42 ---------------------------IVVVHGAGRTDSGVHALRQVAHFDLVREWVPVI 74 + + AGRTD+GV A+ QV R + Sbjct: 180 ATHHNDCKHLEQQAKYNPNFQKKTKVMPIEIKVAGRTDTGVSAISQVCRIRTYRTDIGES 239 Query: 75 LCKALNAYLKISDTISILNL-------------SIVDKQFHARFSAIRRSYLYRIITRQA 121 L+ + V FH F A R+Y+Y I Sbjct: 240 TNNNTGEGLEKFVQNLVNYEMQQLGEGLRIRDVERVKHDFHPTFDASCRAYIYLIDVNDD 299 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP----------IRT 171 + ++ + + + + Sbjct: 300 ASDAITPKITRHIVPKLNSVLKTLEGKELDYLAMSHGKVKTQTTLCTLLHARAGIVEWKC 359 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD--LEKALQAQDRKE 229 + + I I +V FL +R V + G D L L + DR Sbjct: 360 NNDSESPKRKQAICIELVGDRFLRRMVRLLVATALREASGADGCDDNALLNILTSMDRTY 419 Query: 230 CGPLAPPEGLYFDSVEYS 247 APP+GL F Y+ Sbjct: 420 RARAAPPDGLIFVGAGYA 437 >gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis] Length = 375 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 26/231 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAG 49 + +++ Y+G GY+G QR +I+ + A+ + + Sbjct: 75 KKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHAEDMKKMSFQRCA 134 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 RTD GV A QV L W+ L + +N +L I +L + V + F+++ + Sbjct: 135 RTDKGVSAAGQVVSLKL---WLIDDLAEKINQHL--PPQIRVLGVKRVTQGFNSKNNCDA 189 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR---HDFTTFRSIHCQAS 166 R+Y Y + T + L E ++ + H+F F S Sbjct: 190 RTYAYMLPTVAFAPKDSDAASDAASFRLQPETLQRVNRLFALYKGTHNFHNFTSQKAPND 249 Query: 167 SPIR------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDG 211 R + I V +SF+ QIR +G + V G Sbjct: 250 PSARRYVTHVCCGEPFMGGDTEFAVITVRGQSFMLHQIRKMIGLVIAVVKG 300 >gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi] gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi chabaudi] Length = 279 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 33/239 (13%) Query: 17 GWQRQK-NGSSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVP 72 G QK N ++++ + + + ++ RTD G A L ++ Sbjct: 1 GSAYQKDNNNTVENKLIERLHQLDLISDSNCSFSRVSRTDKG-SARMNALTIRLKIKYPH 59 Query: 73 -------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 I K LN LK + I V F AR + I+R+YLY + + Sbjct: 60 LSISIIEKIYLKELNKKLKNIQIVHIQC---VPNNFDARLNCIQRTYLYFFVNKN----- 111 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV-NSFGNLI 184 + M AA+ +G HDF+ F S IRTI F++ N Sbjct: 112 -----------YNIPRMNEAAKIFLGEHDFSNFCKKRKNTISFIRTIHKFEIKRIDQNFY 160 Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD-RKECGPLAPPEGLYFD 242 ++ SFL+ QIR V SL LVG G+ D++ L+ + + +A GL Sbjct: 161 YFKIKGTSFLYNQIRHMVASLFLVGKGQLDEHDIKSMLENNSVKNKNYKIADECGLLLH 219 >gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool] Length = 475 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 71/229 (31%), Gaps = 38/229 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + Y+GS Y G Q +++G++ A+ D Sbjct: 89 FLLKLAYDGSAYSGIAYQGENSAVRTVEGALFDALEK---------TCLIRDRNA----- 134 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 + LNA L I I+ + V F ARF R Y Y + Sbjct: 135 WQPAKRLFPEENYDYAAVLNAVL--PGDIRIVASAPVPPGFDARFDCTGRVYKYFFHSEG 192 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---TIDHFDV 177 LD M AAQ VG H+F F + + R T + Sbjct: 193 ----------------LDLPRMHRAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTSFAIEP 236 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 + RSFL Q+R + +L VG G + L + Sbjct: 237 VGDSACAVATIAGRSFLWHQVRFMMAALLKVGRGTCDEAYIVGLLNRGE 285 >gi|302899152|ref|XP_003047991.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256728923|gb|EEU42278.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 530 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 78/328 (23%), Gaps = 87/328 (26%) Query: 4 YCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVT-----GEIV------VVHGAGR 50 + + Y G Y G++ Q N SI+ + A+ E V GR Sbjct: 57 IALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPKDERVVDFECCEYSKCGR 116 Query: 51 TDSGVHALRQVAHFDL-----------------------------------------VRE 69 TD GV A QV + Sbjct: 117 TDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGDAMVVDEPTGENGEEEDYIETSSFDPI 176 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR 129 + + LN L I S F ARFS R Y Y G Sbjct: 177 KDELQYPRLLNRVLPPDIRILAWCPSPPP-DFSARFSCRERQYRYFFTQPAFTPEPTAGG 235 Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---------- 179 A ++ Q ++ +R I D+ Sbjct: 236 AKNGWLDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNIFEADIKEVRDVSSALPY 295 Query: 180 ------------------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 + +V +FL QIR VG L LVG + Sbjct: 296 LSGSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQRLEKPEVISTL 355 Query: 222 LQAQDRKECGP---LAPPEGLYFDSVEY 246 L C P +A L + Sbjct: 356 LDVAK-SPCKPNYVMADEVPLVLWDCIF 382 >gi|257461391|ref|ZP_05626487.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] gi|257441114|gb|EEV16261.1| tRNA pseudouridine synthase A [Campylobacter gracilis RM3268] Length = 203 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 86/213 (40%), Gaps = 13/213 (6%) Query: 34 AIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 A+ V G + + RTD GVHALRQV+ + W L + +N + + I + + Sbjct: 4 ALGRV-GIFAPLISSSRTDKGVHALRQVSCVECTVHWELPRLKELINRH--CAPYIFVQH 60 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 +S V + FH R+ A+ RSY Y + + L + +D + A + +G H Sbjct: 61 ISPVPRDFHPRYDAVARSYRYVLNHERPSPFLSD--FCVFYPRVDLAALNAALANFIGEH 118 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 DF F SP+R + SF NL I A FL Q+R V + Sbjct: 119 DFREFMKSGSDIKSPVRKLYVARAYSFRNLTLINFKANGFLRAQVRLMVANALKSVQSGR 178 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + R PP GLY SV Y Sbjct: 179 KISF--------SRALSRIPFPPNGLYLSSVSY 203 >gi|146084629|ref|XP_001465060.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] gi|134069156|emb|CAM67303.1| tRNA pseudouridine synthase A-like protein [Leishmania infantum JPCM5] Length = 525 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 30/193 (15%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSSIQG--------------SIEKAI 35 M RY + ++Y GS + GW QR +N G++ +E+A+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTTTAAADYGTGSRHFAKVVLEEAL 189 Query: 36 FLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA----LNAYLKISDTIS 90 + V V A ++GV R H D+ E L + + Sbjct: 190 AVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPLAV 249 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 + ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + Sbjct: 250 LSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLME 309 Query: 151 GRHDFTTFRSIHC 163 G HD+ F Sbjct: 310 GTHDYGFFADSKM 322 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 9/115 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 Q ++ IRT+D +V + + I V +SFL QIR Sbjct: 386 PTFNEYGQRVITYQAKPHEYHKARTNLPTIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIR 445 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--------DRKECGPLAPPEGLYFDSVEY 246 + V +LK G G W +L+ A Q+ R+ P AP GL VEY Sbjct: 446 NMVSALKAGGHGLWDDQELQHAFQSGFEVSRKKFKRERLSP-APAHGLTLWDVEY 499 >gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis G3] Length = 365 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 83/252 (32%), Gaps = 13/252 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDSGVH 56 + Y G+ Y G ++ +++A+ + T + + RTD+GVH Sbjct: 40 IALCYGYLGTNYHGSSLHDQDKTVTLELQEALVNLGVISPNRTKGALKWSESSRTDTGVH 99 Query: 57 ALRQVAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 A +QVA F L L + + L + I + F+A+ SA R Y Y Sbjct: 100 AAKQVATFRLVLPEGVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIFNAQQSASSRRYHY 159 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + +L K R + + S T Sbjct: 160 LLPVNTFSSENIDHLNYLRAKICPIFVGRHQYANYTRHITDELLHTSIKTISEF--TFTD 217 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 + + + SF+ QIR + ++ V T DL+ L + + P Sbjct: 218 PFDVNGTKYVLFTISGNSFMLNQIRKMIAAVLAVSHHLMTEDDLKDTLT--ETRWLLPRL 275 Query: 235 PPEGLYFDSVEY 246 GL+ D V + Sbjct: 276 IGTGLFLDQVFF 287 >gi|167967303|ref|ZP_02549580.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra] Length = 243 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 P+ LD + M A++ L+G HDF F A++ R + D + G L+ V Sbjct: 18 YITAWPRELDLDAMTAASRDLMGLHDFAAFCRHREGATTI-RDLQRLDWSRAGTLVTAHV 76 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A +F + +RS VG+L VG+ + +T + L A R +AP GL V+Y Sbjct: 77 TADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDY 134 >gi|322498495|emb|CBZ33568.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 525 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 34/195 (17%) Query: 1 MIRYCMIIEYNGSGYFGW----QRQKN-------GSS----------------IQGSIEK 33 M RY + ++Y GS + GW QR +N G++ + +E+ Sbjct: 130 MTRYRVDVQYQGSDFDGWYKSVQRTRNSKDAAPAGNTATAAADYGTGSRHFAKV--VLEE 187 Query: 34 AIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA----LNAYLKISDT 88 A+ + V V A ++GV R H D+ E L + + Sbjct: 188 ALAVALDVPTVSVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRATLWLHQRRQPL 247 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ Sbjct: 248 AVLSCHPCRNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARL 307 Query: 149 LVGRHDFTTFRSIHC 163 + G HD+ F Sbjct: 308 MEGTHDYGFFADSKM 322 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 9/115 (7%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 Q ++ IRT+D +V + + I V +SFL QIR Sbjct: 386 PTFNEYGQRVITYQAKPHEYHKARTNLPTIRTLDKIEVVRQEDEVLIWFVGQSFLRHQIR 445 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--------DRKECGPLAPPEGLYFDSVEY 246 + V +LK G G W +L+ A Q+ R+ P AP GL VEY Sbjct: 446 NMVSALKAGGHGLWDDQELQHAFQSGFEVSRKKFKRERLSP-APAHGLTLWDVEY 499 >gi|321468438|gb|EFX79423.1| hypothetical protein DAPPUDRAFT_319620 [Daphnia pulex] Length = 424 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 18/216 (8%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGS---------SIQGSIEKAIFLVTGEI-------VV 44 M RY + Y+G+ + G QRQ SIQ +EK I Sbjct: 1 MQRYLIKFSYSGTRFRGLQRQPGEIYNDEIPYRASIQTILEKGILRFLQHKKSATSFEPG 60 Query: 45 VHGAGRTDSGVHALRQVAHFDLV-REWVPVILCKALNAYLKISDTISILNLSIVDKQFHA 103 V + RTD GVH+ +AH DL + V + + + S I Sbjct: 61 VQFSSRTDQGVHSFCNLAHVDLELLKNVNNVEAVPSTFHARYSSYSRHYLYRIGVTPQDV 120 Query: 104 RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL-VGRHDFTTFRSIH 162 + + I + L L + D + G T + H Sbjct: 121 KCHPVIEWRKCYFIEKPFCLDKAIEVCKLFEGTKDFASFCHGISGRPPGYPTVRTIDAFH 180 Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + P+ + + S + + + +RSF++ Q Sbjct: 181 IKPGRPLFDPLYDPLYSGIDFYDFHIKSRSFMYRQT 216 >gi|282934570|ref|ZP_06339821.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] gi|281301364|gb|EFA93657.1| tRNA pseudouridine synthase A [Lactobacillus jensenii 208-1] Length = 38 Score = 69.5 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV 38 M R+ M + Y+G + G+Q+Q N ++QG+IE+A+ + Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKM 38 >gi|308159447|gb|EFO61978.1| Pseudouridine synthase, putative [Giardia lamblia P15] Length = 351 Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 31/271 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV-------TGEIVVVHGAGRTDS 53 +R +++ +NG+ + G Q S+++ ++ + + + T + + GRTD+ Sbjct: 1 MRAALLVAFNGAAFRGNAYQPTRDSTVERALFEGLQRIGYLKENETIRDIELERTGRTDA 60 Query: 54 GVHALRQVAHFDL-----VREWVPVILCKALNAYLKISD--------------TISILNL 94 GV A + L +P +AL A + Sbjct: 61 GVSAECMLYTVRLSKIIPDVPHLPPHNPRALGALEAFPIESSSIYVHTSGIATCLVFHLN 120 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 ++ Q + E + IP L + A + L Sbjct: 121 RVLPSQVRVLGLLTAIPKDFSARHSCVAREYEYILGYNIPPHLREKANSAARRFLGSNSF 180 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 + R I +V N+ V+ +FL+ Q+R L + G Sbjct: 181 HNFCHHEKDHKTVYNRQIYCSEVYEHENVCIFHVIGSAFLYHQVRYMASMLVHIMAGLER 240 Query: 215 STDLEKALQAQDRKECG---PLAPPEGLYFD 242 + +E L ++ G PL P + L F Sbjct: 241 ESAIEYLL-TKELSTFGHSLPLVPSQYLTFK 270 >gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966] Length = 226 Score = 69.1 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 15/133 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTD 52 + + Y G+ Y G Q +I+G I +A V V + A RTD Sbjct: 77 RKVALFFGYCGTDYSGLQVNPGVKTIEGDIFEAFCRAGAVSKENAVNPNKVQLQRAARTD 136 Query: 53 SGVHALRQVAH----FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 GVHA + D L +N+ L D I I + V F+AR S Sbjct: 137 RGVHAAGNLLTLKLILDPPNLPPNQTLTTYVNSLL--PDQIRIWGMRRVQSAFNARTSCD 194 Query: 109 RRSYLYRIITRQA 121 R Y Y + T Sbjct: 195 SRLYEYLLPTYVF 207 >gi|223945645|gb|ACN26906.1| unknown [Zea mays] Length = 222 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + ARSFL+ Q+R VG LK VG G T+ D+E+ L A+ +AP GLY Sbjct: 153 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLY 212 Query: 241 FDSVEY 246 +V+Y Sbjct: 213 LANVKY 218 >gi|218135247|ref|ZP_03464051.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] gi|217990632|gb|EEC56643.1| hypothetical protein BACPEC_03152 [Bacteroides pectinophilus ATCC 43243] Length = 83 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 37/77 (48%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 ++T G I IRV FL+ +R G+L G + T +++AL +R+ Sbjct: 1 MKTGGEKFDLDRGREIVIRVSGNGFLYNMVRIIAGTLIDAGCKRRTPLSVKEALDGCNRE 60 Query: 229 ECGPLAPPEGLYFDSVE 245 GP APP+GL ++ Sbjct: 61 LAGPTAPPQGLTLIEIK 77 >gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 225 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 12/123 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +I+G + KA+ + A RTD Sbjct: 29 YALLLAYQGKKYNGMQVQKDFPTIEGELFKAMAKCGYICENDVFSPVRFAFQRAARTDRS 88 Query: 55 VHALRQVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E+ LN +L + + + + H S Sbjct: 89 VSAARQMCSMRLAPENHEYFLKTATDKLNTHLPEEIRVLGVRRATRSFKAHKNCDKRTYS 148 Query: 112 YLY 114 Y Sbjct: 149 YTL 151 >gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa] gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa] Length = 445 Score = 69.1 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 20/196 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTG---------EIVVVHGAG 49 + + + Y G+ Y G Q+Q + +I+G +E+AI+ G + + Sbjct: 32 KKVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAGGIRESNYGNLNKISWARSS 91 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L + K +N+YL S + + + Sbjct: 92 RTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYLPDSIRVLSILPAQKSFDPR 151 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE-NMRIAAQHLVGRHDFTTFRSI 161 + SYL + N + +R Sbjct: 152 RECDIRKYSYLLPAEVIGIKSHFSMAEIDDHISDFNNILNAFEGDHPFHNYTVRSKYRRK 211 Query: 162 HCQASSPIRTIDHFDV 177 + + + Sbjct: 212 YPTKNGHVSKRARSSW 227 Score = 39.9 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 163 CQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 + + + + +EI + SF+ QIR VG+ V + +L Sbjct: 285 HFRKIFRCSCGKLEKSLGFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLIMLSL 344 Query: 223 QAQDRKECGPLAPPEGLYF 241 R PLAP E L Sbjct: 345 TKFSRIVL-PLAPSEVLIL 362 >gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-] gi|74627010|sp|O94396|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe] gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe] Length = 534 Score = 68.8 bits (166), Expect = 6e-10, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y GSGY G Q +I+G + A + V + A RTD Sbjct: 44 RKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALARAARTD 103 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E L + +N +L +I + ++ F+ R R Y Sbjct: 104 KGVHAAGNVISLKLIME--DEKLIEKVNEHL--PPSIRLWDVIRTINSFNPRTYCESRIY 159 Query: 113 LYRIITR 119 Y + T Sbjct: 160 EYMVPTY 166 >gi|149756822|ref|XP_001493954.1| PREDICTED: similar to tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA pseudouridylate synthase I) [Equus caballus] Length = 351 Score = 68.8 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 52/254 (20%), Positives = 85/254 (33%), Gaps = 31/254 (12%) Query: 17 GWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSGVHALRQVAH 63 G QR +I+ + A+ +G I HG RTD GV A QV Sbjct: 27 GMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVS 85 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + W+ + + +N++L I IL L V F+++ R+Y Y + T Sbjct: 86 LKV---WLIDDILEKINSHL--PSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAH 140 Query: 124 ALEKGRAWLIPKSLDCEN-------MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 + + + + R Q + Sbjct: 141 KDRDVQDETYRLTAETLQSVNRLLACYKGTHNFHNFTSQKGPREPSAQRYILDMYCEEPF 200 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 V I+V +SF+ QIR VG + + G + L ++ + K P AP Sbjct: 201 VREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLARSW--GEAKVDVPKAPG 258 Query: 237 EGLYFDSVE---YS 247 GL + V Y+ Sbjct: 259 LGLVLERVHFEKYN 272 >gi|183601972|ref|ZP_02963341.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|241190461|ref|YP_002967855.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195867|ref|YP_002969422.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218857|gb|EDT89499.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis HN019] gi|240248853|gb|ACS45793.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250421|gb|ACS47360.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793448|gb|ADG32983.1| tRNA pseudouridine synthase A [Bifidobacterium animalis subsp. lactis V9] Length = 258 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 31/234 (13%) Query: 43 VVVHGAGRTDSGVHALRQVAHFDLVRE-------WVPVILCKALNAYL--KISDTISILN 93 + + AGRTD+GVHA QV H D+ + + + +AL L + D I+I Sbjct: 7 LRLTVAGRTDAGVHATHQVCHVDVPDQTLGQCVGHMNLTPVQALQTRLSRMMPDDIAIHG 66 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLI-------------------- 133 +S+ F ARFSA+ R+Y+YRI + P Sbjct: 67 ISVAPAGFDARFSALERTYVYRIADARVPWDPRLKDFAWRTDRELDIAQMNAAAALTLGL 126 Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 + R P + L+ +VA +F Sbjct: 127 HDFGSFAIANPGGTTIREVKTAYWQRVPTRPLLGPGMGERYHTPAVESGLLCFTIVADAF 186 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 +RS VG+ VG GK ++ R+ GP+AP +GL + + Y Sbjct: 187 ARNMVRSLVGACVQVGMGKRDVDWFAGKMRVPLREGSTGPIAP-QGLTLEHIAY 239 >gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4] Length = 491 Score = 68.4 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 88/282 (31%), Gaps = 39/282 (13%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKA-IFLVTGEIVVV---HGAGRTDSGVHAL 58 + Y G +FG+ Q + +I+ + KA + + +GRTD GV A Sbjct: 87 VAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSLIPDIKTANYFKSGRTDKGVSAY 146 Query: 59 RQVAHFDLVRE---------------WVPVILCKALNAYLKISDTISI------------ 91 QV + K+ L ++ Sbjct: 147 GQVISLYVRSNLKEGEGIIPPKDQSGGPISNRTKSNKTELTKNNDNEKARKGNKKSIEDD 206 Query: 92 ---LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + +++ + + + + + + P LD M+ A++ Sbjct: 207 EELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMKEASKL 266 Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNS--FGNLIEIRVVARSFLHTQIRSFVGSLK 206 +G H++ F I S +R I FD+ L + +FL QIR + L Sbjct: 267 YLGEHNYINFCKIDVNVKSFMRVILQFDIEKVENSELYVATIKGFAFLWHQIRCMMAVLF 326 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGP--LAPPEGLYFDSVEY 246 L+G K + + + L P +A L Y Sbjct: 327 LIGQKKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGY 368 >gi|302844654|ref|XP_002953867.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] gi|300260975|gb|EFJ45191.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f. nagariensis] Length = 709 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 12/79 (15%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGA 48 M R + Y+G+GYFG QRQ + +++ +E+A+ V Sbjct: 1 MQRVAFVCGYDGAGYFGLQRQPDNTGRPTVEQELERALVAAGALQARHAGALHKVNWSRT 60 Query: 49 GRTDSGVHALRQVAHFDLV 67 RTD GV A V D+ Sbjct: 61 SRTDKGVSAAANVVSLDIP 79 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQDRKECGPLAPPEGLY 240 + I V FL QIR VG V + AL A+ P APP GL Sbjct: 436 PYVRIVFVGCGFLMHQIRRMVGLALAVARRTAPPDCMRTALDPARPFLITVPTAPPTGLI 495 Query: 241 FDSVEYS 247 D ++ Sbjct: 496 MDRAFFA 502 >gi|223996591|ref|XP_002287969.1| hypothetical protein THAPSDRAFT_268327 [Thalassiosira pseudonana CCMP1335] gi|220977085|gb|EED95412.1| hypothetical protein THAPSDRAFT_268327 [Thalassiosira pseudonana CCMP1335] Length = 369 Score = 68.4 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 84/281 (29%), Gaps = 62/281 (22%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y+G+ + K V +V+ RTD+GVHA VA F Sbjct: 100 LKIAYDGTH---------------LLAKVYGNVNPNQIVMDSCSRTDAGVHATHLVAQFY 144 Query: 66 LVREWVPVILC--------KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + + LN L + ++ S FH ++Y+Y+ Sbjct: 145 CYSTNLSNDMEVTSLSKLVFVLNRML--PPDVRVMAASPAPFAFHPTLHVRSKTYIYQFA 202 Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 + W + S ++ + R +FR + S + Sbjct: 203 IGPVHDPIRSQYVWHLDGSSGRAVGMNGSRFCLERDGGISFRPVDNFMSDSS--NAINGL 260 Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----------- 226 + + FL+ +R+ VG++ VG G D++ AL Sbjct: 261 MESPQSFSVVITGDRFLYKMVRNIVGTIVAVGCGHLEVNDVQMALHTGKWGDNIGAVEEE 320 Query: 227 ---------------------RKECGPLAPPEGLYFDSVEY 246 R+ C AP GL VEY Sbjct: 321 ESKSSDDFTSSHVKSNSTCIIRRIC---APARGLSLHEVEY 358 >gi|322698560|gb|EFY90329.1| putative pseudouridine synthase 3 [Metarhizium acridum CQMa 102] Length = 564 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 92/338 (27%), Gaps = 96/338 (28%) Query: 4 YCMIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFL---VTGEIVVVH--------GAGR 50 + + Y G Y G++ Q N SI+ + A+ + E + GR Sbjct: 81 IALKLAYLGKNYGGFEFQAMGNQPSIEEELWNALTRACLIFPEDERIVQFNCCEYSKCGR 140 Query: 51 TDSGVHALRQVAHFDL-------------------------------------------- 66 TD GV A QV + Sbjct: 141 TDRGVSAFGQVIGLKVRSNRPLPKNGSKTDVAAAEDIAMAEAGPQGGKQAEEDVEVQEEE 200 Query: 67 ---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + + LN L I S F ARFS R Y Y Sbjct: 201 KPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPP-DFSARFSCRERQYRYFFTQPAFAP 259 Query: 124 -----ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHFD 176 L L LD + MR AA+ G HDF F I Q ++ R I D Sbjct: 260 DPASLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFRRRIFESD 319 Query: 177 VN--------------------------SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 + + + V +FL QIR V L LVG Sbjct: 320 IVEVQDASSVMPYLQTSGFSPPGLQGSGPYPKVYYFHVRGSAFLWHQIRHMVAILFLVGQ 379 Query: 211 GKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 G + T + + L + +A L + Sbjct: 380 GLESPTVVSELLDTAKNPGRPSYVMADEVPLVLWDCIF 417 >gi|154335976|ref|XP_001564224.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061258|emb|CAM38282.1| tRNA pseudouridine synthase A-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 525 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 30/192 (15%) Query: 2 IRYCMIIEYNGSGYFGW----QRQ-------KNGSSIQG--------------SIEKAIF 36 RY + ++Y GS + GW QR G++ G +E+A+ Sbjct: 131 TRYRVDVQYQGSDFDGWYKSVQRTNKKRDAAPAGNTTAGVADYGAGSHHFARVVLEEALA 190 Query: 37 LVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVRE----WVPVILCKALNAYLKISDTISI 91 + V V A ++GV R H D+ E ++ L + + + Sbjct: 191 VALDVPMVGVVAAVIPETGVSVRRLTCHVDVPSEVELQPRTILQRSTLWLHQRRQPLAIL 250 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 ++ FHAR S +RR Y YRI+ R AP + G W + + LD M+ A+ + G Sbjct: 251 SCHPCHNQDFHARHSGVRRVYCYRILNRIAPPLFDAGLQWHVDRYLDVPRMQRMARLMEG 310 Query: 152 RHDFTTFRSIHC 163 HD+ F Sbjct: 311 THDYGFFADTKM 322 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 Q +V +RT+D +V + + I V +SFL QIR Sbjct: 386 PTFNEYGQRVVTYQAKPHEYYKARTNLPTVRTVDKIEVVRQEDEVLIWFVGQSFLRHQIR 445 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQA-------QDRKECGPLAPPEGLYFDSVEY 246 + VG LK G G W +L+ ALQ+ + ++E P AP GL VEY Sbjct: 446 NMVGVLKAGGHGLWDDQELQHALQSGFEVSRKKFKRERLPPAPVHGLTLWDVEY 499 >gi|219122763|ref|XP_002181709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406985|gb|EEC46923.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 421 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 91/339 (26%), Gaps = 97/339 (28%) Query: 5 CMIIEYNGSGYFGWQRQKN------------------------------GSSIQGSIEKA 34 + + Y+G ++GW + S+QG I+ Sbjct: 72 LLHVSYDGRQFYGWSSGNDPKDRESNAARPRYSTRSRRRRRNRGNYDGTVRSVQGEIQYC 131 Query: 35 IFLVTG----EIVVVHGAGRTDSGVHALRQVAHFDLVRE--------------------- 69 + V G + VVV G RTD GVHA +A + E Sbjct: 132 LSKVYGNIDPQRVVVEGCSRTDKGVHARGMMAQIYCLHETTSPNDDPVVDWSIPGKRQPH 191 Query: 70 --------------WVPVILCKALNAYLKISDTISILNLSIVDK-----------QFHAR 104 L LN L +I + + FH Sbjct: 192 PRNATDTSYFTQLPMNLTKLAFTLNRMLPHDISIMGIAPTPHPHVTGCNPAISALPFHPT 251 Query: 105 FSAIRRSYLYRII-----TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT-- 157 S ++Y Y + L + + SLD Sbjct: 252 LSCRHKTYRYVVSVGTRADPTKRLYVWHLDRAISTFSLDQAEQACQILQGSHNFAAFQGA 311 Query: 158 FRSIHCQASSPIRTI---------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 R + +R H + V FL+ IR VG++ V Sbjct: 312 PRGSDNKIKFTMRNTTCQLISIRIQHQSTWLDTETYVVSVTGDRFLYKMIRFLVGTVVGV 371 Query: 209 GDGKWTSTDLEKALQAQDR-KECGPLAPPEGLYFDSVEY 246 G GK T ++ L Q R APP L + VEY Sbjct: 372 GTGKLTLDNVAAMLLTQSRNNLQVECAPPHALVLEHVEY 410 >gi|46138645|ref|XP_391013.1| hypothetical protein FG10837.1 [Gibberella zeae PH-1] Length = 538 Score = 67.6 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 80/331 (24%), Gaps = 88/331 (26%) Query: 2 IRY-CMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGEIVVVH--------G 47 RY + + Y G Y G++ Q N SI+ + A+ + E + Sbjct: 60 TRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPEDERIVDFDCCEYSK 119 Query: 48 AGRTDSGVHALRQVAHFDL----------------------------------------- 66 GRTD GV A QV + Sbjct: 120 CGRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVVDEQSGENAEEEVEDNTPPF 179 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + LN L I S F ARFS R Y Y Sbjct: 180 DPIKDELQYPRLLNRVLPPDIRILAWCPSPPP-DFSARFSCRERQYRYFFTQPAFTPEPS 238 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH------------ 174 G A ++ Q ++ RTI Sbjct: 239 AGGARNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNFERTIYEADIEEVQDVSSA 298 Query: 175 ----------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 D + + +V +FL QIR V L L G T + Sbjct: 299 LPYLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRHMVAVLFLAGQRLETPDVV 358 Query: 219 EKALQAQDRKECGP---LAPPEGLYFDSVEY 246 L C P +A L + Sbjct: 359 TTMLDVAK-NPCKPNYVMADEVPLVLWDCIF 388 >gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Pichia angusta DL-1] Length = 491 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 13/129 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + + Y G+GY G Q +I+G + A + A RTD Sbjct: 79 KKVACYLSYCGTGYHGMQMNPPAKTIEGDLFDAFVKAGAISKNNSNDLKKSSFMRAARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N+YL D I V+K F R R Y Sbjct: 139 KGVHAAGNVISLKLIIEDPDL--VEKINSYL--PDQIRFWGYERVNKSFDCRKVCSSRIY 194 Query: 113 LYRIITRQA 121 Y + T Sbjct: 195 EYLMPTYSF 203 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 2/109 (1%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D + + + + ++ T+ V + + I++ +SF+ Q Sbjct: 301 DALKIYLGPHNFHNFTNGKDYKDPSAIRFMKNITVSDPIVVNDQEWVSIKIHGQSFMLHQ 360 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 IR + LV +E+A K P AP GL + Y Sbjct: 361 IRKMIAMATLVVRTGCPLARIEEAF--GPEKVNIPKAPALGLLLEQPVY 407 >gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa] gi|307757811|gb|EFO17045.1| hypothetical protein LOAG_11456 [Loa loa] Length = 236 Score = 67.6 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 12/123 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSG 54 Y +++ Y G Y G Q QK+ +++G + KA+ ++ A RTD Sbjct: 104 YALLLAYQGKKYNGMQVQKDFPTVEGELFKAMAKCGYISEDDILSPVRFAFQRAARTDRS 163 Query: 55 VHALRQVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 V A RQ+ L E+ LNA L + + + + H S Sbjct: 164 VSAARQMCSMRLAPENHEYFLKTASDKLNAQLPEEIRVMGVRRATRSFKAHKNCDKRTYS 223 Query: 112 YLY 114 Y Sbjct: 224 YTL 226 >gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138] gi|74637780|sp|Q6FV05|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata] Length = 549 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTG---EIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+ ++ K AI + A RTD Sbjct: 87 RKVAVMIGYCGTGYHGMQYNPPNPTIEAALFKAFVDAGAISKANSNDLKKNNFMRAARTD 146 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +NA L + I I ++ V+K F R R Y Sbjct: 147 KGVHAGGNLISLKMIIEDP--EIMDKINANL--PEGIRIWDIERVNKAFDCRKMCSSRWY 202 Query: 113 LYRIITR 119 Y + T Sbjct: 203 EYLLPTY 209 Score = 40.6 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 3/150 (2%) Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + + + T + + + + +++ + Sbjct: 269 PPPREEFDDQEELYQKVKQWKLLENTHRRQYRISEMKLNKFRAAMNQYLGAHNFHNFTLG 328 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 +F +I + ++ + I++ +SF+ QIR + L+ Sbjct: 329 KEFKDPSAIRFMKEIKVSDPF-VIGDAKAEWVSIKIHGQSFMLHQIRKMISMATLIARCG 387 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + +A +K P AP GL + Sbjct: 388 TPVERISQAF--GPQKINIPKAPALGLLLE 415 >gi|224000315|ref|XP_002289830.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975038|gb|EED93367.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 323 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 100/306 (32%), Gaps = 71/306 (23%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSGVH 56 +++ + G+ Y G+Q ++Q +IE +F + RTD GVH Sbjct: 1 ILVSFLGTNYSGFQINSTQHTLQAAIELGLFKAGLISPSNFGWPSKYSWSNSARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVI---------LCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A QV + + + +N +L + I +L++ V + F AR + Sbjct: 61 AAAQVVSMKGEMIFHSDTVSIEDQLNAMREKVNEHL--PNDIRVLDIERVTRAFCARTNR 118 Query: 108 IRRSYLYRIITRQAPLALEKGRAW------------------------------------ 131 + Y Y + + E A+ Sbjct: 119 DKVRYQYMVPSFMFSSREEICCAFGNIGETAIEDAKSRAKITPMEASNIVQDAVTDEVMQ 178 Query: 132 --------LIPKSLDCENMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGN 182 E +R + G H F + R + +S R I F Sbjct: 179 QARGKLIGYRVNDDQMERLRSGLKVFEGTHTFHNYTRRLGSDNASASRYIISFAPLDPIV 238 Query: 183 LIEIRVV-----ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 + + +SFL QIR + + + G T ++++L+ R + +AP + Sbjct: 239 VDGTEWIPVQIVGQSFLLNQIRKMISAAVDLARGTVTHEQIQQSLKKGSRMKVN-VAPAQ 297 Query: 238 GLYFDS 243 GL+ D Sbjct: 298 GLFLDR 303 >gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri f. nagariensis] Length = 642 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 68/250 (27%), Gaps = 32/250 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y G Y G+ RQ N + +IE R GV AL + Sbjct: 111 VALELMYVGWSYQGFARQDNT---ENTIEA------------SSVKRGWGGVVALNLRSV 155 Query: 64 FDLVREWVP----VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + P + +N L + + Y Sbjct: 156 ARVDEPEAPLELEYDYPRLVNKALPPDVRVLGWTAVPENFNS-----------RYVYHPD 204 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + ++ T S + + + Sbjct: 205 PPESCRYSLDIDAMRAAAARFVGEHDFRNFCKPDVATVRSFRRRILSFTLDPVPTSSSDG 264 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPE 237 + I V +FL Q+R L +VG G+ + + L +A RK +AP E Sbjct: 265 AHRVFAITVRGTAFLWHQVRCMAAVLLMVGRGQERPEVVSELLDVEAHPRKPQYSMAPEE 324 Query: 238 GLYFDSVEYS 247 L + +S Sbjct: 325 PLLLYACGFS 334 >gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 503 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++ Y G+GY G Q +I+G + +A V + V + A RTD Sbjct: 44 RKVACLVGYCGTGYHGMQLNPPNKTIEGDLFEAFVKVGAVSSYNADDPKKVALARAARTD 103 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E L + +N L + + + +I + Y Sbjct: 104 KGVHAAGNVITLKLILE--DENLIQKVNEVLPPTIRVWDVIRTINSFNPRTYCESRIYEY 161 >gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 15/129 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE------IVVVHGAGR 50 + +I Y G+GY G Q Q + +I+G + A ++ E A R Sbjct: 29 KKVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAAR 88 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E ++ +N++L D I + + +K F R R Sbjct: 89 TDKGVHAAGNVISCKLIIEDQDILQ--RINSHL--PDQIRVWGIERTNKSFDCRKMCSSR 144 Query: 111 SYLYRIITR 119 Y Y + T Sbjct: 145 VYEYLLPTY 153 Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + + + F+ + T+ + + + I++ +SF+ QIR Sbjct: 269 MKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQSFMLHQIR 328 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LV T ++ K P AP GL ++ Y Sbjct: 329 KMIAMAVLVVRTGCPITRIKDCF--GPTKINIPKAPALGLLLENPVY 373 >gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R] gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R] Length = 495 Score = 66.8 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 83/312 (26%), Gaps = 69/312 (22%) Query: 2 IRYCMIIEYNGSGYFG--WQRQKNG-SSIQGSIEKAI--FLVTGEIVVVHG-----AGRT 51 + + YNG+ Y G +Q+ +++ + A+ + G GRT Sbjct: 48 RKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRLIDPATGFEGCGWEKCGRT 107 Query: 52 DSGVHALRQVAHFD---------------------------------------LVREWVP 72 D GV A QV Sbjct: 108 DRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTNAAR 167 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 +A N I+ ++L +I + + R + + E Sbjct: 168 PATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKYFFSPEGLDLAA 227 Query: 133 IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 + + D ++L + + S D L + ++ + Sbjct: 228 MQDAADRLVGEHDFRNLCKLDPSKQLTTFARKILSARLNPAQAD--GASTLYVLDLIGTA 285 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGP---------------LA 234 FL+ Q+R + L LVG + ++ L AQ R P +A Sbjct: 286 FLYNQVRHIMAVLFLVGTKLEHPSVIDALLNVDAAQPRAPSRPGEPFPQVIPSKPEYQMA 345 Query: 235 PPEGLYFDSVEY 246 P L Y Sbjct: 346 DPLPLMLWECAY 357 >gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC 6260] Length = 477 Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 15/129 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE------IVVVHGAGR 50 + +I Y G+GY G Q Q + +I+G + A ++ E A R Sbjct: 29 KKVACMIGYCGTGYNGMQIQNNPDVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRAAR 88 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E ++ +N++L D I + + +K F R R Sbjct: 89 TDKGVHAAGNVISCKLIIEDQDILQ--RINSHL--PDQIRVWGIERTNKSFDCRKMCSSR 144 Query: 111 SYLYRIITR 119 Y Y + T Sbjct: 145 VYEYLLPTY 153 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + + + F+ + T+ + + + I++ +SF+ QIR Sbjct: 269 MKLYEGSHNFHNFTIGKPFKDASSRRYMKETTVSNPFIIEGTEWVSIKIHGQSFMLHQIR 328 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LV T ++ K P AP GL ++ Y Sbjct: 329 KMIAMAVLVVRTGCPITRIKDCF--GPTKINIPKAPALGLLLENPVY 373 >gi|48477852|ref|YP_023558.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] gi|62901313|sp|Q6L0Y7|TRUA_PICTO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA pseudouridylate synthase I; AltName: Full=tRNA-uridine isomerase I gi|48430500|gb|AAT43365.1| tRNA pseudouridine synthase A [Picrophilus torridus DSM 9790] Length = 251 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 38/245 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + + Y+G+ + G+ R + +S++ I + + A RTD V A V Sbjct: 7 MHLLIKYGYDGTKFEGFDRSNSKNSVESVIINVLSEYNITK-NIESAARTDKNVSAAGNV 65 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + K L + + + + + R+++++ Sbjct: 66 FYIKTE-----ERPEKILGILNGNIKNMFFHSYYLSNSYINPRYNSMKI----------- 109 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 ++IP +D A+ L +P+RTI+ + + Sbjct: 110 -------YKYIIPYRIDSRLKNNIARFLGTHDFTNF---SKNDYRNPVRTINKIEFEEYN 159 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + +SF+ Q+RS +G + D + +R LA PE L Sbjct: 160 DFTVVNFYGKSFVWHQLRSIIGFAM------HSDEDPFSI-KYHNR----FLAEPEPLIL 208 Query: 242 DSVEY 246 + Y Sbjct: 209 YDIIY 213 >gi|169838040|ref|ZP_02871228.1| tRNA pseudouridine synthase A [candidate division TM7 single-cell isolate TM7a] Length = 154 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 4/153 (2%) Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 ++ F+ARF A R+YLY + + E + + ++ E + +G+HDF++ Sbjct: 2 NENFNARFDAKNRAYLYIMRAEKDITPFESNYITGLKEKVEAEKFQKIMDSFIGKHDFSS 61 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNL----IEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 F +P+R I + + I + FL T +R +GS V GK Sbjct: 62 FMKKDKAYRNPVREIFYIKCYYDKKFGKNQVNIEICGNGFLKTMVRIMIGSALTVYFGKE 121 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + K L+ D LAP EGLY V Y Sbjct: 122 KEDYIIKRLKNPDADNKKILAPSEGLYLYKVNY 154 >gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica] gi|74635069|sp|Q6CC39|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica] Length = 528 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 13/129 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +I Y G+GY G Q +I+G I +A + A RTD Sbjct: 85 RKVACMIGYCGTGYHGMQLNPPQKTIEGDIFQAFVKAGAISQNNADDPKKSAFMRAARTD 144 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ E + + +N++L + + + +S +K F R R Y Sbjct: 145 KGVHAAGNVISLKMIIE--DENIVEKINSHL--PEQLRVWGVSRTNKAFECRKLCSSRVY 200 Query: 113 LYRIITRQA 121 Y + T Sbjct: 201 EYLMPTYSF 209 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 1/106 (0%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 + + F+ + T + + I++ +SF+ QIR Sbjct: 316 KIYEGTHNFHNFTLGKAFKDPSAMRTMKSLTCSDPFLIDGTEWVSIKIHGQSFMLHQIRK 375 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + + L L + R P AP GL + Y Sbjct: 376 MISMVALSVRCNADPQKLIPQTFEKARIN-IPKAPALGLLLERPVY 420 >gi|71985046|ref|NP_496062.3| Temporarily Assigned Gene name family member (tag-124) [Caenorhabditis elegans] gi|1353139|sp|Q09524|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|3875428|emb|CAA87378.1| C. elegans protein E02H1.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 402 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 84/276 (30%), Gaps = 37/276 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGV- 55 + + Y G + G +Q + ++++ I +A+ GRTD GV Sbjct: 30 RKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHLIEDWTKCDFSRCGRTDKGVS 89 Query: 56 -----------------------HALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 + ++ D + K LN L TI + Sbjct: 90 AFKQTAAMVVRSLCPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVL--PKTIRVF 147 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 + V + F+ARF RR+Y Y L + A L+ D N Sbjct: 148 AWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELLVGEHDFSNFCQIDM----N 203 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 + + + N +++E+ V FL IR V L+ +G Sbjct: 204 EKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHMIRYIVTILQEIGREN 263 Query: 213 WTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 + + + L + + LA L Y Sbjct: 264 EQPSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGY 299 >gi|330924858|ref|XP_003300809.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1] gi|311324870|gb|EFQ91095.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1] Length = 631 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFL---VTGEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI V + V + RTD Sbjct: 107 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRCARTD 166 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +N++L + + ++ + + Y Sbjct: 167 KGVHAAGNVVSLKLIIE--DEDIVDKINSHLTDQIRVWGIQRTVGSFSCYQACDSRWYEY 224 Score = 39.1 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 7/135 (5%) Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + + R + +LD + + + S + Sbjct: 405 YIDIKKAYRISPERQARVQAALDNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQV--APKP 462 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + ++V +SF+ QIR VG L +E + + P AP Sbjct: 463 IIINDTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTNPKIMEDSF--GNNVVRIPKAP 520 Query: 236 PEGLYFDSVE---YS 247 GL + Y+ Sbjct: 521 GLGLLLERPVFDSYN 535 >gi|189209550|ref|XP_001941107.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187977200|gb|EDU43826.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 595 Score = 66.1 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFL---VTGEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI V + V + RTD Sbjct: 98 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRCARTD 157 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +N++L + + ++ + + Y Sbjct: 158 KGVHAAGNVVSLKLIIE--DEDIVDKINSHLTDQIRVWGIQRTVGSFSCYQACDSRWYEY 215 Score = 39.5 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 I + + R + +L+ + + + S + Sbjct: 396 YIDIKKAYRISPERQARVQAALNNYLGTHRYHNYTVHKKYNDKSAQRYIKSFQV--APKP 453 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + ++V +SF+ QIR VG L +E++ + P AP Sbjct: 454 IIINDTEWLSLKVHGQSFMMHQIRKMVGMAALTVRCGTNPEIMEESF--GNNVVRIPKAP 511 Query: 236 PEGLYFDSVE---YS 247 GL + Y+ Sbjct: 512 GLGLLLERPVFDSYN 526 >gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001] Length = 614 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 13/141 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + K AI + + RTD Sbjct: 124 RKVAVMVGYSGTGYKGMQINNEEKTIEGDLFKAFVAAGAISKANADDHKKSSLVRCARTD 183 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +NA L + I + + + F + R Y Sbjct: 184 KGVHAAGNVISLKLIIE--DEDIVDKINANL--PEQIRVWGIQRTNNSFSCYQTCDSRWY 239 Query: 113 LYRIITRQAPLALEKGRAWLI 133 Y + T W Sbjct: 240 EYLLPTYCLLPPHPDSWLWKQ 260 Score = 43.7 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 8/109 (7%) Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSF 201 + + A I++ E +V +SF+ QIR Sbjct: 409 YCGTINFHNYTVQKSFKDPSAKRHIKSFQVNTQPIQIRDTEWVSLKVHGQSFMMHQIRKM 468 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 VG LV + + + P AP GL + Y+ Sbjct: 469 VGMASLVVRCATPLERIRQ--SYGPTRIAIPKAPGLGLLLERPVFDAYN 515 >gi|302308519|ref|NP_985445.2| AFL105Cp [Ashbya gossypii ATCC 10895] gi|299790670|gb|AAS53269.2| AFL105Cp [Ashbya gossypii ATCC 10895] Length = 528 Score = 66.1 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +++ Y G+GY G Q +I+ + +A + A RTD Sbjct: 67 RKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTD 126 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +N +L I + +S V+K F R R Y Sbjct: 127 KGVHAGGNVISLKLIIEDP--AIKDKINEHL--PPGIRVWGISRVNKAFDCRKLCGSRWY 182 Query: 113 LYRIITRQAPLALEKGR 129 Y + T Sbjct: 183 EYLLPTYSFIGPKPNTY 199 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + I++ +SF+ QIR + LV + + + +K P AP G Sbjct: 334 MKTEWVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQ--SYGPQKINIPKAPALG 391 Query: 239 LYFDSVEY 246 L +S Y Sbjct: 392 LLLESPVY 399 >gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii] Length = 428 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 21/185 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + + Y G+ Y G Q Q+ S++ +E+AI+ G + V + Sbjct: 2 KNVAIWVGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRSS 61 Query: 50 RTDSGVHALRQVAHFDLV-------REWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L V L + + + A NAYL ISI + V K F Sbjct: 62 RTDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYL--PANISIFGVVPVTKSFD 119 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 AR S R+Y Y + E + + D + + H++T R Sbjct: 120 ARRSCYSRTYDYYFPAACIGINNESSSEDVDQRIQDFRRTLKSLEGRHAFHNYTVRRLYR 179 Query: 163 CQASS 167 Sbjct: 180 KSQRR 184 Score = 42.9 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 ++ H + + +N +++ IRV SF+ QIR VG+ V Sbjct: 243 PVKASHFRNVAKCTCEGPEKLNCPSSVVRIRVTGESFMVHQIRKMVGTAIAVFRHVLPED 302 Query: 217 DLEKALQAQDRKECGPLAPPEGLYF 241 + + + PLAPP GL Sbjct: 303 AIP-VSTCRHARVVLPLAPPHGLVL 326 >gi|74693104|sp|Q755C8|PUS1_ASHGO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 Length = 528 Score = 65.7 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTD 52 + +++ Y G+GY G Q +I+ + +A + A RTD Sbjct: 67 RKVAVMVGYCGTGYHGMQYNPPNRTIEAELFEAFVKAGAISRANSTDLKKNGFMRAARTD 126 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +N +L I + +S V+K F R R Y Sbjct: 127 KGVHAGGNVISLKLIIEDP--AIKDKINEHL--PPGIRVWGISRVNKAFDCRKLCGSRWY 182 Query: 113 LYRIITRQAPLALEKGR 129 Y + T Sbjct: 183 EYLLPTYSFIGPKPNTY 199 Score = 44.9 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGS 204 + F+ T+ V + I++ +SF+ QIR + Sbjct: 300 HNFHNYTLGKDFKDPSTVRFMKDITVSRPFVIGEMKTEWVSIKIHGQSFMLHQIRKMISM 359 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LV + + + +K P AP GL +S Y Sbjct: 360 ATLVARCNCSPERIAQ--SYGPQKINIPKAPALGLLLESPVY 399 >gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi] gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi] Length = 483 Score = 65.7 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 88/309 (28%), Gaps = 69/309 (22%) Query: 4 YCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGE-------------- 41 + + YNG + G Q Q + +I+ + ++ GE Sbjct: 101 FVISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTK 160 Query: 42 -----IVVVHGAGRTDSGV--------------HALRQVAHFDLVREWVPVILCKALNAY 82 + + A RTD GV + F E + L +N + Sbjct: 161 SKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINNH 220 Query: 83 -----LKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-----------TRQAPLALE 126 L + D I I N+ V +F R YLY + + Sbjct: 221 VRIKNLNLMDQIKIFNIQRVPSRFVLHHWCQFRRYLYVLPLSALDLSSRNIITKCNNIFN 280 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-TIDHFDVNSFGNLIE 185 + L+ HL I ++ + Sbjct: 281 LETNEQKCQKLNELLGHFEGIHLFHNFTVDAKPGSDSSRRHVKTLKIIEQNLEGDLPHVV 340 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWT-----------STDLEKALQAQDRKECGPLA 234 I + RSF+ QIR +G++ + G D + L + P+A Sbjct: 341 IEISGRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQTEVLLPMA 400 Query: 235 PPEGLYFDS 243 P EGL+ D+ Sbjct: 401 PSEGLFLDN 409 >gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01] Length = 313 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 88/225 (39%), Gaps = 27/225 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKA--IFLVTGEIVVVHGAGRTDSGVHALRQV 61 ++I Y+G Y G K+G SI I+ A + + + AGRTD GV A+ V Sbjct: 39 IALLISYHGEKYRGLAECKDGDSIGNRIKNALLLSTLADH---IVYAGRTDKGVSAIGMV 95 Query: 62 --------------AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 +F + LN YL + I ++ + V+ F ARF+ Sbjct: 96 ASVKIKSLLRENTSRYFLNDDDNHEFNYQAILNNYL--PEDIRVIGWAPVEDGFSARFTC 153 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASS 167 I+R Y Y + I D M Q ++ +F +++ Sbjct: 154 IKRKYRYYFTNPFVKI------KNQIRLKYDINKMEEMCQKILTLKNFYNLSKHSDKSAR 207 Query: 168 PIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 RT+D + G+L + + A+SFLH +R L++ G + Sbjct: 208 YNRTVDICQIIKEGDLYYLDIQAKSFLHNMVRKIFWVLEMAGKDE 252 >gi|242096622|ref|XP_002438801.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] gi|241917024|gb|EER90168.1| hypothetical protein SORBIDRAFT_10g026490 [Sorghum bicolor] Length = 318 Score = 65.3 bits (157), Expect = 7e-09, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 46 HGAGRTDSGVHALRQVAHFDLVREWVPVILCK-ALNAYLKISDTISILNLSIVDKQFHAR 104 AGRTD GV AL+QV F R+ V K A+N ++ + + Sbjct: 80 VVAGRTDKGVTALQQVCSFYTWRKDVKSGDIKDAINEAAPDKLKPLHVSEVPREFHPNFS 139 Query: 105 FSAIRRSYLY--------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 R Y++ + + LE + P+S D + + L G+ Sbjct: 140 AKWRRYMYIFPLDEDANLILGEAHSSKILENSEHNIKPQSFDVAKVDKILKTLAGKTLSY 199 Query: 157 TFRSIHCQASSPIRTIDHFDVNSF-----------------GNLIEIRVVARSFLHTQIR 199 + QAS + + ++ + +VA FL +R Sbjct: 200 KMFARDTQASRSVGPPTECFMFHSRAAVAKLHYANEDYKEGMMVMCVELVANRFLRKMVR 259 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V + L ++A DR+ P APPEGL V Y Sbjct: 260 VLVATAIREAAAGAGDDALLNLMEATDRRATAPPAPPEGLCLIDVGY 306 >gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae] gi|187038647|emb|CAP22290.1| CBR-TAG-124 protein [Caenorhabditis briggsae AF16] Length = 401 Score = 65.3 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 81/270 (30%), Gaps = 25/270 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVH 56 + + Y G + G +Q N ++++ + +A+ + GRTD GV Sbjct: 30 RKIAIQFFYLGWEHDGLVQQPNTQNTVEHHLMEALIKTHIIEDSIKCDFSRCGRTDKGVS 89 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A +Q A F ++ + + + ++ Sbjct: 90 AFKQTAAFLARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVLPKTIRVFAW 149 Query: 117 ------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + + LD E MR AA+ L+G HD++ F I + Sbjct: 150 APVAPTFNARFDCNRRTYKYSFPKAGLDLEKMREAAKLLIGEHDYSNFCQIDMNKMRLEQ 209 Query: 171 TIDH------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDL 218 + N +++E+ V FL IR V L+ V G + + Sbjct: 210 SYTRKIYDVTVEQVSTHSENDIYSMVELTVSGSGFLWHMIRYIVTVLQEVARGNEQPSLV 269 Query: 219 EKALQ-AQDRKECGPLAPPE-GLYFDSVEY 246 L ++ + L Y Sbjct: 270 SDLLDLSKYPSRPHYTLSSDTPLCLFDCGY 299 >gi|269864426|ref|XP_002651569.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220064284|gb|EED42489.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 147 Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALKSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDLV 67 + + Sbjct: 125 MIISLKIK 132 >gi|219116871|ref|XP_002179230.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217409121|gb|EEC49053.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 63 Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 6 MIIEYNGSGYFGWQRQK--NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + + Y GS + GWQRQ S+Q +E A+ G V V AGRTD+GVHAL Q+ Sbjct: 1 LDLAYFGSDFCGWQRQAQSKKPSVQKIVEDAMQDALGYAVNVRVAGRTDAGVHALGQIGR 60 Query: 64 FDL 66 Sbjct: 61 VRT 63 >gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis] Length = 501 Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 22/124 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV--------------- 38 M YCM Y+GS Y G Q Q + +I+G +E + + Sbjct: 7 MRTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQNDDQGG 66 Query: 39 TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVD 98 + + GRTD GVH++ QV F + + N + L Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINGELEFILKNKDVDEKIIEICKRLKEER 126 Query: 99 KQFH 102 + Sbjct: 127 DILN 130 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 2/137 (1%) Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + + + +L L+ + + + + S + Sbjct: 311 YKIEDYLDPKRRFSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIEEIKVV 370 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 ++ ++ NLI+I + +SFL QIR V + G S ++ K Sbjct: 371 KVNQNEIKGDINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFL--PDKFS 428 Query: 231 GPLAPPEGLYFDSVEYS 247 LAP +GL D V Y+ Sbjct: 429 IHLAPSQGLLLDRVFYN 445 >gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Pichia pastoris CBS 7435] Length = 516 Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTG------EIVVVHGAGRTD 52 + +I Y G+GY G Q +I+G + +A ++ + A RTD Sbjct: 90 KKVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAARTD 149 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ E + + +N+ L TI + +K F R R Y Sbjct: 150 KGVHAAGNVISLKMIIE--DEDILEKINSKL--PPTIRVWGYERTNKNFDCRKMCSSRIY 205 Query: 113 LYRIITRQA 121 Y + T Sbjct: 206 EYLMPTFSF 214 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 2/100 (2%) Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + F+ T+ V + I++ +SF+ QIR + Sbjct: 328 HNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQSFMLHQIRKMIAMAA 387 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LV + +A Q+ + P AP GL + Y Sbjct: 388 LVVRTGCPLGRITEAFQSS--RINIPKAPALGLLLEQPVY 425 >gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA [Pichia pastoris GS115] Length = 509 Score = 64.9 bits (156), Expect = 9e-09, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 13/129 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---FLVTG------EIVVVHGAGRTD 52 + +I Y G+GY G Q +I+G + +A ++ + A RTD Sbjct: 83 KKVACLIGYCGTGYHGMQLNPPQKTIEGDLFEAFVESGAISRDNSNDLKKSSFMRAARTD 142 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ E + + +N+ L TI + +K F R R Y Sbjct: 143 KGVHAAGNVISLKMIIE--DEDILEKINSKL--PPTIRVWGYERTNKNFDCRKMCSSRIY 198 Query: 113 LYRIITRQA 121 Y + T Sbjct: 199 EYLMPTFSF 207 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 2/100 (2%) Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 + F+ T+ V + I++ +SF+ QIR + Sbjct: 321 HNFHNFTLGKHFKDASANRYMKEITVSEPFVIEGTEWVSIKIHGQSFMLHQIRKMIAMAA 380 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 LV + +A Q+ + P AP GL + Y Sbjct: 381 LVVRTGCPLGRITEAFQSS--RINIPKAPALGLLLEQPVY 418 >gi|227497211|ref|ZP_03927459.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226833342|gb|EEH65725.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 49 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 22/41 (53%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIV 43 R + + Y+G+G+ GW Q +++G + A+ V E V Sbjct: 9 RLRLDLAYDGAGFKGWAAQPGLRTVEGELTAALATVLREPV 49 >gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens] Length = 445 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 17/186 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M + Y G+ Y G Q Q+ +I+ +E AIF G + + Sbjct: 2 KKVAMWLGYVGTRYKGLQIQRGPGSAQTIEEELELAIFKAGGMIESNFGNLSKISWTRSS 61 Query: 50 RTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 RTD GVH+L V + A N +S I + ++ V + F AR Sbjct: 62 RTDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVTRSFRAR 121 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 R+Y Y + + + + + + ++ + H++T R Sbjct: 122 HDCCTRTYDYLLPAAILGIHPDTVPSQVEQRVTKFRSLLHLFEGKHAYHNYTIRRLYRPF 181 Query: 165 ASSPIR 170 P + Sbjct: 182 PEKPYK 187 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 7/197 (3%) Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR---F 105 + + V R + H + + L S LN + + R Sbjct: 147 SQVEQRVTKFRSLLHLFEGKHAYHNYTIRRLYRPFPEKPYKSRLNDRNDNDTSNERTDKP 206 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 S S + + + R+ + +++ D Sbjct: 207 STTTSSIELDFLDEEDIMEELPDRSTFTLPGGNVTDLKAWWLPTPNESDKVWSSHFRKVI 266 Query: 166 SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ 225 S + I I + SF+ QIR +G+ V G + +L Sbjct: 267 SFNC---GMPETFGEAQFIRISITGSSFMVHQIRKMIGTAIAVFHGLLPGDVIPISLARH 323 Query: 226 DRKECGPLAPPEGLYFD 242 R PLAPP+GL Sbjct: 324 SRIVL-PLAPPDGLILV 339 >gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis] Length = 346 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 77/249 (30%), Gaps = 35/249 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 + + + Y+G+G G Q Q++ + +I+ +E+AIF G + + R + G Sbjct: 42 RKVALFVGYSGTGRRGLQMQRSSAPEETIEDVLEEAIFQAGG----ILPSNRGNLG---- 93 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 VR + + K+ NA + + + L+ + Sbjct: 94 -------KVRVFSVQRVSKSWNARRECIRRSYSYFVPASVLGLALDGGKEDQRRLHLLQH 146 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + + D R F + T V Sbjct: 147 ASSKKGQVQVAWKFERDDADPIVRR--------HFRFIEWCRAG--------TELEVLVP 190 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 I + + SF+ QIR VG V G LE +L R PLAPP Sbjct: 191 GGQPCIHLSLQGSSFMLHQIRKMVGMAVAVARGNLPLELLEFSLATPARINL-PLAPPST 249 Query: 239 LYFDSVEYS 247 L +S Sbjct: 250 LMLTGALFS 258 >gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa II] Length = 501 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 22/95 (23%) Query: 1 MIRYCMIIEYNGSGYFGWQRQ-------KNGSSIQGSIEKAIFLV--------------- 38 M YCM Y+GS Y G Q Q + +I+G +E + + Sbjct: 7 MKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQNDDQGG 66 Query: 39 TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPV 73 + + GRTD GVH++ QV F + Sbjct: 67 LLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINDE 101 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 2/137 (1%) Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 + + + +L L+ + + + + S + Sbjct: 311 YKIEDYLDPKRRFSLSDEDLKRFQSILNEYIGTHSFHNFTSKSSYEDSTSWRHIEEIKVV 370 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC 230 + ++ NLI+I + +SFL QIR V + G S ++ K Sbjct: 371 KVSQNEIKGEINLIKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFL--PDKFS 428 Query: 231 GPLAPPEGLYFDSVEYS 247 LAP +GL D V Y+ Sbjct: 429 IHLAPSQGLLLDRVFYN 445 >gi|297826435|ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326939|gb|EFH57359.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 507 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 20/183 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + + I Y G+ Y G Q Q + +I+G +E AI+ G + + Sbjct: 63 KKVVIRIGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSS 122 Query: 50 RTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 RTD GVH+L + + P A + + I + ++ +++F R Sbjct: 123 RTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPR 182 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA---QHLVGRHDFTTFRSI 161 R Y Y + + + D + + +R Sbjct: 183 RECTLRKYSYLLPVDVIGIKNSFTSDEIDYHITDFNKILNEFEGEYPFHNYTQRSRYRRK 242 Query: 162 HCQ 164 Q Sbjct: 243 SEQ 245 Score = 41.8 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 2/110 (1%) Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 +P D + A+ L + H + R + + +EI + Sbjct: 291 HVPPDSDNSQVNSRAKWLYEPDETDKLSGAHFRKVFRCR-SGKLENSLGFGFVEISIWGE 349 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 SF+ QIR +G+ V + +L R PLAP E L Sbjct: 350 SFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVL-PLAPSEVLIL 398 >gi|258574223|ref|XP_002541293.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704] gi|237901559|gb|EEP75960.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704] Length = 578 Score = 64.5 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 108 RKVAVLLGYSGTGYHGMQMSTKERTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + K +N L S I I + +K F R Y Sbjct: 168 KGVHAAGNVISLKLIIEDPDL--VKKVNDIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 223 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 224 EYLIPTHCFIPPH 236 >gi|255540533|ref|XP_002511331.1| pseudouridylate synthase, putative [Ricinus communis] gi|223550446|gb|EEF51933.1| pseudouridylate synthase, putative [Ricinus communis] Length = 178 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGA------GRTDSGV 55 + + Y G GY G Q+ +I+G +E+A+F G RTD GV Sbjct: 31 RKIAIFFAYCGVGYQGMQKNPGTKTIEGELEEALFHFDAVPEQDRGCPKRYDWARTDKGV 90 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 A+ QV + ++ LN+ L I Sbjct: 91 SAVGQVISGRFHIDPPGLVG--RLNSILPSHIRIFGY 125 >gi|85091723|ref|XP_959041.1| hypothetical protein NCU07528 [Neurospora crassa OR74A] gi|28920438|gb|EAA29805.1| hypothetical protein NCU07528 [Neurospora crassa OR74A] Length = 625 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 121 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +N++L D I + + V F + R Y Sbjct: 181 KGVHAAANVLSLKLIVE--DEDIVDKINSHL--PDQIKVWGIQRVTNGFSCYQACDSRWY 236 Query: 113 LYRIITR 119 Y + + Sbjct: 237 EYLMPSY 243 Score = 41.8 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 3/107 (2%) Query: 141 NMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 N + + + + + + + ++V +SF+ QIR Sbjct: 416 NQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQSFMMHQIR 475 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V L+ + + + R+ P AP GL + + Sbjct: 476 KMVAMAVLIVRCGAPMSLVNE--SYGPRRISIPKAPGLGLMLERPVF 520 >gi|289613362|emb|CBI59671.1| unnamed protein product [Sordaria macrospora] Length = 634 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + A + + RTD Sbjct: 126 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRCARTD 185 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N++L D I + + V F + R Y Sbjct: 186 KGVHAAANVLSLKLIVE--DEDIVEKINSHL--PDQIKVWGIQRVTNGFSCYQACDSRWY 241 Query: 113 LYRIITR 119 Y + + Sbjct: 242 EYLMPSY 248 Score = 42.6 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 3/107 (2%) Query: 141 NMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 N + + + + + + + ++V +SF+ QIR Sbjct: 425 NQYLGTHNFHNYTILKSHTDPSARRHIKSFQVNPTPIRINDTEWLSLKVHGQSFMMHQIR 484 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V L+ + + + R+ P AP GL + + Sbjct: 485 KMVAMAVLIVRCGAPMSLINE--SYGPRRISIPKAPGLGLMLERPVF 529 >gi|255023069|ref|ZP_05295055.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208] Length = 33 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK 33 M RY II Y+GSG++G+Q Q N ++Q IEK Sbjct: 1 MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEK 33 >gi|66812718|ref|XP_640538.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] gi|60468568|gb|EAL66571.1| tRNA pseudouridine synthase [Dictyostelium discoideum AX4] Length = 504 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 87/303 (28%), Gaps = 61/303 (20%) Query: 4 YCMIIEYNGSGYFG--WQRQKNGSSIQGSIEKAIFL---VTGEIV------VVHGAGRTD 52 M+ Y+G+GY+G +Q SI+ IEK +F + V + RTD Sbjct: 91 VAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSSRTD 150 Query: 53 SG------VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHA--R 104 G V + V + + + +N YL S + Q Sbjct: 151 KGVHSLATVISCFLVVDDNTFKNDINQTFIDTINNYLPSSIRLFSACKVSRSFQARKKGI 210 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + + + K I + +L ++ + + Sbjct: 211 ERSYNYMVPSEYLNNIKIDEMNKILQNFIGINSYHNFTSKRNTYLSNNNNKNHEKDEKDE 270 Query: 165 ASSPIRTIDHFDVNSFGN-----------------------------------------L 183 + +V + Sbjct: 271 EDGDEEEEEDDEVEVENSNNNNSNYRLNEKLLFRNNSTNIRNIKSFYVENEIIEIKGKGW 330 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + ++ SF+ QIR VG + G T LE +L++ C P APP LY + Sbjct: 331 YKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLKSP-FSICVPTAPPFPLYLFN 389 Query: 244 VEY 246 V++ Sbjct: 390 VKF 392 >gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 572 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +I+ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 48 RKVAIILAYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPARYEWARAARTD 107 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L R Y Sbjct: 108 KGVSAAAQVVSG--RFYVDPPGFIDRLNAKLAPQIRAFGYVRVTNSFSAKKFCDRRRYVY 165 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + VV +SF+ QIR VG V + +D + P AP GL+ Sbjct: 418 DFVRCEVVGQSFMLHQIRKMVGLAVAVMRN-CAPESIYDVAFRKDIRLNVPTAPEVGLHL 476 Query: 242 DSV---EYS 247 D Y+ Sbjct: 477 DECMFASYN 485 >gi|269861921|ref|XP_002650634.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220065855|gb|EED43425.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 152 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALRSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDLV 67 + + Sbjct: 125 MIISLKIK 132 >gi|225459791|ref|XP_002284797.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 558 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 39 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTD 98 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + + LN+ L I I V F+A+ RR Y Sbjct: 99 KGVSAVGQVVSGRFYIDPPGL--VERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRY 154 Query: 113 LYRII 117 +Y I Sbjct: 155 VYLIP 159 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + + + LEKG + RI ++ + I + S R I Sbjct: 341 HSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIV 400 Query: 174 HFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 FD N+ ++ VV +SF+ QIR +G + + LE AL +D Sbjct: 401 SFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVN 459 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P AP GLY D +S Sbjct: 460 INVPTAPEVGLYLDECFFS 478 >gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera] Length = 559 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 27 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTD 86 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + + LN+ L I I V F+A+ RR Y Sbjct: 87 KGVSAVGQVVSGRFYIDPPGL--VERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRY 142 Query: 113 LYRII 117 +Y I Sbjct: 143 VYLIP 147 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 6/139 (4%) Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 + + + LEKG + RI ++ + I + S R I Sbjct: 342 HSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIV 401 Query: 174 HFDVNSF-----GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 FD N+ ++ VV +SF+ QIR +G + + LE AL +D Sbjct: 402 SFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVN 460 Query: 229 ECGPLAPPEGLYFDSVEYS 247 P AP GLY D +S Sbjct: 461 INVPTAPEVGLYLDECFFS 479 >gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group] Length = 581 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 49 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTD 108 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + LNA L R Y Sbjct: 109 KGVSAAAQVVSG--RFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVY 166 Score = 44.5 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I VV +SF+ QIR +G V + +D P AP GLY Sbjct: 427 DFIRCEVVGQSFMLHQIRKMIGLAVAVMRN-CAPESIYDVAFRKDVNLNVPTAPEVGLYL 485 Query: 242 DSV---EYS 247 D Y+ Sbjct: 486 DECMFTSYN 494 >gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group] gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group] gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group] Length = 581 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 49 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARAARTD 108 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P + LNA L R Y Sbjct: 109 KGVSAAAQVVSG--RFYVDPPVFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCDRRRYVY 166 Score = 44.5 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I VV +SF+ QIR +G V + +D P AP GLY Sbjct: 427 DFIRCEVVGQSFMLHQIRKMIGLAVAVMRN-CAPESIYDVAFRKDVNLNVPTAPEVGLYL 485 Query: 242 DSV---EYS 247 D Y+ Sbjct: 486 DECMFTSYN 494 >gi|326929552|ref|XP_003210926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Meleagris gallopavo] Length = 596 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 83/251 (33%), Gaps = 29/251 (11%) Query: 19 QRQKNG---SSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVHALRQVAHFDL 66 QR +I+ + A+ + + RTD GV A Q+ + Sbjct: 139 QRNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKV 198 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR-QAPLAL 125 + + + +N +L I IL L V F+++ R+Y Y + T A Sbjct: 199 ---RLIDDILEKINNHL--PSHIRILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDH 253 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN------S 179 + E + G H+F F S R Sbjct: 254 DVQEEAYRLSRETLEKVNSLLACYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVRE 313 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I+V +SF+ QIR +G + + G + +E++ + K P AP GL Sbjct: 314 NIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESVIERSW--GEEKVDVPKAPGLGL 371 Query: 240 YFDSVE---YS 247 + V Y+ Sbjct: 372 VLERVHFEKYN 382 >gi|322695818|gb|EFY87620.1| tRNA pseudouridine synthase [Metarhizium acridum CQMa 102] Length = 592 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 13/146 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q + +I+ + KAI + RTD Sbjct: 115 RKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCARTD 174 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +NA+L + I I + + F+ R Y Sbjct: 175 KGVHAAGNVISLKLIIE--DEDIVDKINAHL--PEQIRIWGIQRTNNSFNCYQYCDSRFY 230 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLD 138 Y + + + + L+ Sbjct: 231 EYLLPSYCLLPPHPQTYLAKECEKLN 256 Score = 39.1 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 7/113 (6%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 D + + F+ + S + + + ++V +SF+ Q Sbjct: 388 DKYTGTYNFHNFTIQKTFSDPSARRHIKSFTV--NPKPIIIGDTEWLSLKVHGQSFMMHQ 445 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 IR VG L+ T + Q++K P AP GL + Y+ Sbjct: 446 IRKMVGLASLMVRCGTTLDRVGD--SYQEQKMAIPKAPGLGLLLERPVFENYN 496 >gi|322705939|gb|EFY97522.1| tRNA pseudouridine synthase [Metarhizium anisopliae ARSEF 23] Length = 612 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 13/146 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q + +I+ + KAI + RTD Sbjct: 115 RKVAVMIGYSGTGYKGMQVNGDEPTIERDLFRAFIDAKAISKANADDPRKSSLARCARTD 174 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +NA+L + I I + + F+ R Y Sbjct: 175 KGVHAAGNVISLKLIIE--DEDIVEKINAHL--PEQIRIWGIQRTNNSFNCYQYCDSRFY 230 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLD 138 Y + + + + L+ Sbjct: 231 EYLLPSYCLLPPHPQTYLAKECEKLN 256 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR VG L+ + Q++K P AP GL + Sbjct: 447 VHGQSFMMHQIRKMVGLASLMVRCGTALDRVAD--SYQEQKMAIPKAPGLGLLLERPVFD 504 Query: 245 EYS 247 Y+ Sbjct: 505 NYN 507 >gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum] Length = 388 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 73/247 (29%), Gaps = 37/247 (14%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q ++ + A+ GRTD GV + Sbjct: 71 IALKLSYLGWQYCGLVPQGCYTLTVMDRLLDALEKAKLIENRSECSFSVCGRTDKGVSGI 130 Query: 59 RQVAHFDL----------------------VREWVPVILCKALNAYLKISDTISILNLSI 96 QV F + LN L I +L S Sbjct: 131 CQVVSFVSRSVVAEGVGVIEDSGCRISERQEVPDKEMDFVSILNRNL--PRDIRVLAWSP 188 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 V +F+ARF RRSY Y + + D N + + + Sbjct: 189 VSPEFNARFDCRRRSYEYYFPESGLDIESMIDAGNRLVGVHDFRNF---CASRIEKDTVS 245 Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 R I + + L + V A FL+ QIR L +VG G + + Sbjct: 246 FVREI-----FEVVINVVDSSDHHTKLYCLCVSASGFLYHQIRYIASILFMVGRGYESPS 300 Query: 217 DLEKALQ 223 ++ L Sbjct: 301 VIDDMLD 307 >gi|156836479|ref|XP_001642300.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM 70294] gi|156112794|gb|EDO14442.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM 70294] Length = 562 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 77 RKVAVMVGYCGTGYHGMQYNPPNPTIEDALFKAFVQAGAISKANSNDLKKNGFMRAARTD 136 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + N+ V+K F R R Y Sbjct: 137 KGVHAGGNLISLKMIIEDPEIKQK--INEEL--PNGIKVWNIERVNKAFDCRKMCGSRWY 192 Query: 113 LYRIITR 119 Y + T Sbjct: 193 EYLLPTY 199 Score = 39.1 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 31/211 (14%), Positives = 56/211 (26%), Gaps = 16/211 (7%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVP-VILCKALNAYLKISDTISILNLSIVDK 99 E + G D + + D +A+ Y+ + K Sbjct: 215 EESKLELPGVLDDDLESQIFWKRVDHEVRQHFTEEEIEAIKNYVPPPRDEFNDKDGLYQK 274 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 + YRI + +L + + + R Sbjct: 275 VKQYKKLENEHRRRYRISDEKLTKFRNAMNEYLGAHNFHNFTLGKDFKDPSAIRFMKEIR 334 Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 +T I I++ +SF+ QIR + LV + + Sbjct: 335 VSDPFVIGAAKTEW----------ISIKIHGQSFMLHQIRKMISMATLVTRCGCPVSRIS 384 Query: 220 KALQAQDRKECGPLAPPEGLYFDSV---EYS 247 +A +K P AP GL +S Y+ Sbjct: 385 QA--YGPQKINIPKAPALGLLLESPVFEGYN 413 >gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula] Length = 530 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A++ + + RTD Sbjct: 54 RKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTD 113 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P LN+ L I I V F A+ RR Y Sbjct: 114 KGVSAVGQVVSG--RFYIDPPGFVDRLNSNL--PSQIRIFGFKRVTASFSAKKFCDRRRY 169 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 170 VYLIPVFALDPCCHRDR 186 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 1/110 (0%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 + + + + V ++ +V +SF+ Q Sbjct: 333 NILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQ 392 Query: 198 IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 IR +G + + +EKALQ +D P AP GLY D ++ Sbjct: 393 IRKMMGLAVAIMRNCAPESLIEKALQ-KDVSITVPTAPEVGLYLDECFFT 441 >gi|269866402|ref|XP_002652261.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220062857|gb|EED41795.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 268 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 15/169 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 58 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALKSTDLYIESNDIVFCGRTDRGVSAAN 117 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + + L+ + I + + + Y + Sbjct: 118 MIISLKIK-------------SILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNS 164 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 + + L+ + +C Sbjct: 165 DFEIKKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRY 213 >gi|310821765|ref|YP_003954123.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] gi|309394837|gb|ADO72296.1| tRNA pseudouridylate synthase [Stigmatella aurantiaca DW4/3-1] Length = 252 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 28 QGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD 87 Q ++E + TG V AGRTD GVHA QV L P L L A + Sbjct: 2 QSTLEAVLRS-TGVPATVMPAGRTDRGVHARMQVVSLRLEAGDTPEALAARLPA--LLPP 58 Query: 88 TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 + + + FHA++SA ++Y YR+ + + IA + Sbjct: 59 DLGVCAVRRPPPSFHAQWSAAGKTYCYRVQLGGRVSETWRPYVLEAAEEPRLAQRAIAPE 118 Query: 148 HLVG-----RHDFTTFRSIHCQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSF 201 L + + RT++ V+ G L EI++ SF Q+R Sbjct: 119 RLAELLQGAVGQRDFWAFHASSSPRKPRTLESATVHELEGGLFEIQLRGDSFARYQVRYL 178 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 VGS L G+ AL++ + G A GL V Y Sbjct: 179 VGSALLTAAGQLPEAQWRAALESAE-AIPGLRAAAAGLILWEVRY 222 >gi|269862152|ref|XP_002650725.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220065712|gb|EED43331.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 319 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 15/169 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--VTGEIVVVHGAGRTDSGVHALR 59 + + I Y+G Y G Q+ NG SI +E A+ + E + GRTD GV A Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALRSTDLYIESNDIVFCGRTDRGVSAAN 124 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + + L+ + I + + + Y + Sbjct: 125 MIISLKIK-------------SILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNS 171 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 + + L+ + +C Sbjct: 172 DFEIKKHDAKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRY 220 >gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 458 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + LN+ L I R Y Sbjct: 82 KGVSAVGQVVSGRFNVDPP--GFVDRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVY 139 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 1/106 (0%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 + + + T T + + I+ V+ +SF+ QIR Sbjct: 282 CYVGSYNFHNFTTRTKADDPAANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKM 341 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G + + + ++ A ++D P+AP GLY D ++ Sbjct: 342 MGLAVAIMRNCASESLIQTAF-SKDVNITVPMAPEVGLYLDECFFT 386 >gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster] Length = 341 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 15/173 (8%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTG------EIVVVHG---AGRTDSGV 55 +++ Y G+ Y+G QR +I+ + KA+ E + + A RTD GV Sbjct: 130 AILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKGV 189 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 A RQV L E A NA L I + + V K F+A+ R+Y Y Sbjct: 190 SAARQVCSVKLPEELDLE----AFNADL--PQQIRLFGVERVTKGFNAKDQCNARTYTYT 243 Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 + T EK + E ++ + L T + + + Sbjct: 244 LPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGRRTSTTSPARKAFW 296 >gi|46205445|ref|ZP_00048530.2| COG0223: Methionyl-tRNA formyltransferase [Magnetospirillum magnetotacticum MS-1] Length = 189 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 21/28 (75%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQ 28 M RY ++IEY+G+ + GWQRQ + ++Q Sbjct: 156 MPRYKLVIEYDGAPFCGWQRQADDPTVQ 183 >gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans] gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans] Length = 546 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + ++I Y G+GY G Q +I+ + + AI + + G A RTD Sbjct: 75 RKVAVMIGYCGTGYHGMQYNPPTPTIEAELFRAFVEAGAISQANSKDLKKSGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E +I +N+ L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNVVSLKLIIEDPDIIAK--INSKL--PEGIRVWDIERVNKAFDCRKLCGSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 42.2 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I++ +SF+ QIR + LV + A + +K P AP GL + Sbjct: 346 WVSIKIHGQSFMLHQIRKMISMATLVTRCSCPVDRITDA--YKPQKINIPKAPALGLLLE 403 Query: 243 SVEY 246 Y Sbjct: 404 CPVY 407 >gi|223948195|gb|ACN28181.1| unknown [Zea mays] Length = 562 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L R Y Sbjct: 112 KGVSAAAQVVSG--RFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLY 169 Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + VV +SF+ QIR +G V + +D P AP GLY Sbjct: 395 DFVRCEVVGQSFMLHQIRKMIGLAVAVMRN-CAPESIYDVAFRKDVNLNVPTAPEVGLYL 453 Query: 242 DSV---EYS 247 D Y+ Sbjct: 454 DECMFTSYN 462 >gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays] gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays] Length = 561 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRSAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L R Y Sbjct: 112 KGVSAAAQVVSG--RFYVDPPGFIDRLNAQLAPQIRAYGYVRVTNSFNAKKFCDRRRYLY 169 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + VV +SF+ QIR +G V + +D P AP GLY Sbjct: 394 DFVRCEVVGQSFMLHQIRKMIGLAVAVIRN-CAPESIYDVAFRKDVNLNVPTAPEVGLYL 452 Query: 242 DSV---EYS 247 D Y+ Sbjct: 453 DECMFTSYN 461 >gi|124506245|ref|XP_001351720.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] gi|23504649|emb|CAD51527.1| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7] Length = 681 Score = 63.4 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + K + D ++ A+ +G H+F FR + ++ Sbjct: 534 HSMKIINKEKEIRSVIPCDINKIKECAKLFIGHHNFECFRGTLKGTEKLRKINTFCTIHF 593 Query: 180 ------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 NL + + FL+ IR VG+L VG G D+ AL + Sbjct: 594 LDVYELKNNLYQFVIQGDRFLYHMIRIIVGTLVQVGVGLLNVEDVRDALHLCKPLKVKLC 653 Query: 234 APPEGLYFDSV 244 AP +GL + + Sbjct: 654 APSQGLCLNKI 664 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 68/251 (27%), Gaps = 81/251 (32%) Query: 2 IRYCMIIEYNGSGYFGWQ-----------------------RQKNG-----SSIQGSIEK 33 +I+ Y+G+ Y GW RQKN S++Q +I Sbjct: 106 TNLLLIVNYDGTNYNGWTGLENSSEVYLNALQNYKNKKKTERQKNIERKKYSTVQNNILD 165 Query: 34 AIFLVTG--------------------------------------------EIVVVHGAG 49 I + G + G Sbjct: 166 CILKLHGYKYIHNNNNNEHICNSYKVGDTDNYNNAHHNDYNQNNVNGIINNKPFEFIGVS 225 Query: 50 RTDSGVHALRQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 RTD GVHA + + + + ++LN+ L I + S D F+ R Sbjct: 226 RTDKGVHAKEYICQYISYEKEPPCDGDMEHIKRSLNSLLNKDIKILAVLKSPHDH-FNIR 284 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 F + Y Y + R LE+ + D ++ T SIH Sbjct: 285 FHNSGKIYTYNLDIRNPSQPLERNY---AWQLYDDPRFFFLSKKTNKHKKEGTPNSIHNA 341 Query: 165 ASSPIRTIDHF 175 + D Sbjct: 342 QQTCTTPGDKN 352 >gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira] Length = 597 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIEDPDLVNK--VNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 230 EYLIPTHCFLPPH 242 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V LV + + +K P AP GL + Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGLGLLLERPIFD 488 Query: 246 -YS 247 Y+ Sbjct: 489 TYN 491 >gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 597 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIEDPDLVNK--VNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 230 EYLIPTHCFLPPH 242 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V LV + + +K P AP GL + Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGLGLLLERPIFD 488 Query: 246 -YS 247 Y+ Sbjct: 489 TYN 491 >gi|171685180|ref|XP_001907531.1| hypothetical protein [Podospora anserina S mat+] gi|170942551|emb|CAP68202.1| unnamed protein product [Podospora anserina S mat+] Length = 615 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G I AI + + RTD Sbjct: 120 RKVAVLIGYAGTGYHGIQINHKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRCARTD 179 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N++L I + ++ + + Y Sbjct: 180 KGVHAAGNVLSLKLIVE--DEDIVEKINSHLPEQIRIWGIQRTVNAFSCYQSCDSRWYEY 237 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 8/104 (7%) Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLK 206 + A I++ + E +V +SF+ QIR V Sbjct: 416 NYHNYTVMKSFKDASAKRHIKSFEANTTPIQIGDTEWLSLKVHGQSFMMHQIRKMVAMAV 475 Query: 207 LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 +V +++ R+ P AP GL + EY+ Sbjct: 476 MVVRCGAPLDLIKE--SYGPRRISIPKAPGLGLMLERPMFTEYN 517 >gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS] Length = 597 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAI---------FLVTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G I A+ + + RTD Sbjct: 114 RKVAVLLGYSGTGYHGMQMSAKEKTIEGEIFPALVAAGAISKANAMDPKKSSFVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L S I I + +K F R Y Sbjct: 174 KGVHAAGNVISLKLIIEDPDLVNK--VNNIL--SPQIRIWGIEPTNKGFSCYQFCDSRIY 229 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 230 EYLIPTHCFLPPH 242 Score = 37.2 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V LV + + +K P AP GL + Sbjct: 431 VHGQSFMMHQIRKMVAMAALVVRCGTDPQRITQ--SYGPQKIPIPKAPGLGLLLERPIFD 488 Query: 246 -YS 247 Y+ Sbjct: 489 TYN 491 >gi|70941666|ref|XP_741093.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56519252|emb|CAH76348.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 493 Score = 63.0 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 6/114 (5%) Query: 137 LDCENMRIAAQHLVGRHDFTTFR------SIHCQASSPIRTIDHFDVNSFGNLIEIRVVA 190 D + ++ ++ +G H+F FR ++ NL + + Sbjct: 363 CDIDKIKECSKLFIGYHNFECFRGTVKGTEKQRTINTFCNIHFLDIYKVKDNLYQFIIQG 422 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR VG+L VG G D++ AL AP +GL + Sbjct: 423 DRFLYHMIRIIVGALIQVGVGILNIQDVKDALYNCKPLRVKLCAPAQGLCLKKI 476 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 58/198 (29%), Gaps = 68/198 (34%) Query: 2 IRYCMIIEYNGSGYFGWQ------------------------------------------ 19 ++I+Y+G+ Y GW Sbjct: 30 TNIILVIDYDGTNYNGWTGIENSSPVYLNAVNGFKNVKNSNICKDTVFEQSEDSETSYNS 89 Query: 20 -RQKNGS---SIQGSIEKAIFLVTG----------------EIVVVHGAGRTDSGVHALR 59 + KN + +IQ I + + G + G RTD GVHA Sbjct: 90 LKNKNENKYNTIQNCILNCLLKIHGYGENPNSIIDQKENDSKPFEFIGVSRTDKGVHAKE 149 Query: 60 QVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 V + + +LN L + + + + F+ RF + + Y Y Sbjct: 150 YVCQYISYKKLPPFNGNLEKIKLSLNRLLNKDIKVLGVFNAPFN-SFNVRFHNLGKIYTY 208 Query: 115 RIITRQAPLALEKGRAWL 132 I R+ LEK +W Sbjct: 209 NIDLRKPSQPLEKNFSWQ 226 >gi|74216027|dbj|BAE23701.1| unnamed protein product [Mus musculus] Length = 347 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 51/256 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 + +++ Y+G GY G Q GV A QV Sbjct: 50 RKIVLLMAYSGKGYHGMQ----------------------------------GVSAAGQV 75 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + W+ + +N++L I IL L V F+++ R+Y Y + T Sbjct: 76 VSLKV---WLIDDILDKINSHL--PSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAF 130 Query: 122 PLAL----EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 ++ + + H+FT+ + ++ + + Sbjct: 131 AHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPREPSARRYILEMYCEE 190 Query: 178 NSFGN---LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 I+V +SF+ QIR VG + + G + LE++ + K P A Sbjct: 191 PFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GEEKVDVPKA 248 Query: 235 PPEGLYFDSVE---YS 247 P GL + V Y+ Sbjct: 249 PGLGLVLERVHFEKYN 264 >gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74637053|sp|Q6CWQ8|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis] Length = 553 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + ++I Y G+GY G Q +I+ + + AI + +G A RTD Sbjct: 99 RKVAVMIGYCGTGYHGMQYNPPNDTIEKELFEAFVRAGAISKANSTDLKKNGFQRAARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V + +N L D I + ++S V+K F R R Y Sbjct: 159 KGVHAGGNVISLKLIIEDPEV--KEKINNEL--PDQIRVWDISRVNKAFDCRKMCSSRWY 214 Query: 113 LYRIITR 119 Y + T Sbjct: 215 EYLLPTY 221 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I++ +SF+ QIR + L+ + +A K P AP GL + Sbjct: 369 WVSIKIHGQSFMLHQIRKMISMATLITRCFSPLERIRQA--YGQEKINIPKAPALGLLLE 426 Query: 243 SVEY 246 + Y Sbjct: 427 APVY 430 >gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC 50581] Length = 507 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 82/309 (26%), Gaps = 65/309 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIF-------LVTGEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ T + +GRTD GV Sbjct: 72 IAIQVCYDGTEYAGLAQQSNKEYTIEELLLNALRDAALIPQHATANDIHFERSGRTDRGV 131 Query: 56 HALRQVAHFD--------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH----- 102 A QV F R + ++ + + Sbjct: 132 IAAGQVFSFYARTNNKEITPRPIPAPDPRFYRDRRDGMAPPTKPNDNFDETRGGDTVSVG 191 Query: 103 --------------------------ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKS 136 R + + + S Sbjct: 192 KEPELKQVPQEVEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYIYTFGQVGS 251 Query: 137 LDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR-------- 187 L+ + M A LVG + + R I + G E Sbjct: 252 LNIQRMAEACTTLVGFHDFRNICKPSLDNVKTFERVIFSCQLEIDGQPYECEGSRAAVSE 311 Query: 188 -------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEG 238 V +FL+ Q+R L +G + + L K P+AP E Sbjct: 312 DSSLSLVVCGSAFLYHQVRCIASLLLHIGAELEPPSIISDLLDVTRFPGKPDYPIAPGEL 371 Query: 239 LYFDSVEYS 247 L F+ EY+ Sbjct: 372 LIFEKAEYT 380 >gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC 10500] Length = 580 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 74 KKVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTD 133 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + K +N L S I + IV K F R Y Sbjct: 134 RGVHAAGNVVSLKLIVEDP--DIVKKINDNL--SPQIRVWGYEIVTKGFSCYQLCDSRMY 189 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 190 EYLIPTHCFLPPH 202 Score = 41.4 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 7/135 (5%) Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + R + +LD + + +F S S Sbjct: 345 YQNAKRAYRIPQSRLQRVQDALDKYVGTRNFHNYTIQKNFRDPSSKRVIKSFVA--NKEP 402 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + ++V +SF+ QIR V + L+ +E+ + P AP Sbjct: 403 IIINGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEE--SYGPTRLSIPKAP 460 Query: 236 PEGLYFDSVE---YS 247 GL + Y+ Sbjct: 461 GLGLLLEHPIFDSYN 475 >gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor] Length = 567 Score = 63.0 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTD 52 + +++ Y G+GY G Q+ +I+G +E+A++ A RTD Sbjct: 52 RKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYQAGAVPEADRAAPRRYDWARAARTD 111 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A QV P LNA L R Y Sbjct: 112 KGVSAAAQVVSG--RFYVDPPGFIDRLNAQLASQIRAYGYVRVTNSFSAKKFCDRRRYLY 169 Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + VV +SF+ QIR +G V + +D P AP GLY Sbjct: 400 DFVRCEVVGQSFMLHQIRKMIGLAVAVMRN-CAPETIYDVAFRKDVNLNVPTAPEVGLYL 458 Query: 242 DSV---EYS 247 D Y+ Sbjct: 459 DECMFTSYN 467 >gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens] Length = 680 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 46/338 (13%), Positives = 82/338 (24%), Gaps = 95/338 (28%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SI---------QGSIEKAIFL---VTGE--IVVVHGA 48 + + Y G+GY G+ Q ++ Q + A+ +TG Sbjct: 217 VALKVMYLGTGYQGFASQAGSPNTVEVQNSLIGGQTELFAALHRTRMITGTAAEAKYTRC 276 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKAL----------------------------- 79 GRTD GV A+ QV L + P + Sbjct: 277 GRTDKGVSAVGQVVALYLRSKIQPRRQENIVSTGDAEEELNSKSSISAQGVPEGEDGSFT 336 Query: 80 -NAYLKISDTISILNLSIVDKQFHARFSAIRRSY-------------------------L 113 N+ + + + V +R + + Sbjct: 337 KNSGFVMDLSCIDHSGDRVAMARASRKEEEQFARTAYEDEYDYVGILNRALPEDIRVLGW 396 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAA--QHLVGRHDFTTFRSIHCQASSPIRT 171 + R + D N+ + +++ F + Sbjct: 397 CPVPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYAFNRQYNVMKFACKQFEGEHDFTN 456 Query: 172 IDHFDVNSFGNLIEIRVV---------------------ARSFLHTQIRSFVGSLKLVGD 210 D + N + +FL Q+R L +VG Sbjct: 457 FCKMDAANVHNYMRTITHFDIIPSNEKWGGKSVWIMNVKGTAFLWHQVRCMAAVLFMVGA 516 Query: 211 GKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 G T +E+ L + RK +A L Y Sbjct: 517 GHEKPTIVEELLDVKKIVRKPQYIMASETPLLLFHCGY 554 >gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15] Length = 621 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 105 RKVAVMIGYSGTGYKGMQIDNKQKTIEGDLFTAFVAAGAISKANADDPKKSSLVRCARTD 164 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N++L S+ I + + F + R Y Sbjct: 165 KGVHAAGNVISLKLIIE--EEDIVEKINSHL--SEQIRVWGIQRTTGSFSCYQACDSRWY 220 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 221 EYLIPTHAFLPPH 233 Score = 36.8 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%) Query: 169 IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK 228 + + + + ++V +SF+ QIR VG + L + ++ + Sbjct: 446 FKVAPKPIIINDTEWLSLKVHGQSFMMHQIRKMVGMVALTVRCGSNPDIMIESF--GNTI 503 Query: 229 ECGPLAPPEGLYFDSVE---YS 247 P AP GL + Y+ Sbjct: 504 VRIPKAPGLGLLLERPVFDSYN 525 >gi|71416935|ref|XP_810423.1| tRNA pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL Brener] gi|70874950|gb|EAN88572.1| tRNA pseudouridine synthase A-like protein, putative [Trypanosoma cruzi] Length = 608 Score = 62.6 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 44/205 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQ-------KNGSSI-----------QG---------- 29 RY + ++Y GS + GW RQ +G ++ Q Sbjct: 207 TRYRVDVQYQGSDFDGWWKSTSRQLYRRETLPDG-TVRRVPLTPDTTDQEDSSAKKTMSS 265 Query: 30 ------SIEKAIFLVTG-EIVVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVILCKAL 79 +E+A+ + V V + GV R HFD+ I+ +A Sbjct: 266 RYHARTVLEEALAVALDVHTVKVVAGVIPEVGVSVRRLCCHFDVPSHIELQPRTIIQRAT 325 Query: 80 NAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 K +++L+ ++ FHAR S +RR Y+YRI+ R AP + G W + + LD Sbjct: 326 MWLEKRQQPLAVLSCQRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVDRHLD 385 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHC 163 M+ A+ L G DF F Sbjct: 386 VPRMQRFAKALEGTKDFGYFADPKM 410 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA---QD 226 RTID +V + + I V +SFL QIR+ V LK G G W +L++ALQ+ Sbjct: 499 RTIDRLEVVRQDDEVLIWFVGKSFLRHQIRNMVSLLKAAGHGLWNELELQQALQSGFEPS 558 Query: 227 RKECG----PLAPPEGLYFDSVEY 246 R+ P AP GL VEY Sbjct: 559 RRRFKRERFPPAPVYGLTLWDVEY 582 >gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia] Length = 297 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 7/211 (3%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 + + V RTD GVHAL V L + N + + L + ++ Q Sbjct: 35 KKIGVSRGARTDRGVHALCNVVSLKLQIDQKY-CSSMTNNKLVDKWNIDWDLLIQELNSQ 93 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + ++ + + S I Q+L + Sbjct: 94 LPSDIKVNAIKHVTQSFNVKHQADQRMYNYISPSFSTVDYVQNICNQYLGTHNFHNYTSK 153 Query: 161 IHCQASSPIRTIDHFD----VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 S R I F N ++ ++ SF++ QIR +G++ + K + Sbjct: 154 KEYNDPSSKRFIQDFRVQNLNFHNENYLKFTILGNSFMYHQIRKIIGTIYQIVQEKKDLS 213 Query: 217 DLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 ++ Q +AP +GLY ++++ Sbjct: 214 FIQDTFSQQQHSL--YIAPQQGLYLREIKFT 242 >gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 548 Score = 62.6 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q + +I+G + A+ V + RTD Sbjct: 83 KKVALLMGYSGTGYSGMQLNEQQRTIEGDLFTALVNVGAVSKANAADPKKSSFVRCARTD 142 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V ++ E + + +NA L S I + + K F R Y Sbjct: 143 KGVHAAGNVVSLKMIVE--DEDIIQKINAEL--SPQIRVWGYEVTSKSFSCYQMCDSRVY 198 Query: 113 LYRIITRQAPLALEKGR 129 Y + + Sbjct: 199 EYLMPSHCLVPPHPSTY 215 Score = 42.9 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 8/102 (7%) Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLV 208 + A I++ N E +V +SF+ QIR V +V Sbjct: 330 HNYTIQKTHKDPSAKRHIKSFKVNTTPIIINGTEWLSLKVHGQSFMMHQIRKMVAMATMV 389 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 + + + P AP GL + Y+ Sbjct: 390 VRSGCHPDRITE--TYGPERIAIPKAPGLGLLLERPIFDAYN 429 >gi|225463117|ref|XP_002264487.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1520 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 61/196 (31%), Gaps = 13/196 (6%) Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV ++ E + + LN L I ++ V FHARFS + R Y Sbjct: 1249 RGVSLVQLRKLSMGGIEQGEIDYMRVLNRVL--PKDIRVMGWCPVPIGFHARFSCLSREY 1306 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + + D N S Sbjct: 1307 KYFFWRGNLNILAMESAGKKFVGEHDFRN-------FCKMDAVNVHNYRRHIISFE--IA 1357 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKEC 230 + L I++ +FL Q+R V L ++G G + ++ L + RK Sbjct: 1358 PTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQ 1417 Query: 231 GPLAPPEGLYFDSVEY 246 +AP L +S E+ Sbjct: 1418 YAMAPEIPLVLESCEF 1433 Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSG 54 RY + + Y G ++G+ + + +++ I KA+ + + GRTD G Sbjct: 80 KRYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKG 139 Query: 55 VHA 57 V + Sbjct: 140 VSS 142 >gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] gi|150856545|gb|EDN31737.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10] Length = 631 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + K AI + + RTD Sbjct: 98 HKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALIRCARTD 157 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N++L D I + + F+ R Y Sbjct: 158 KGVHAAGNVLSLKLIIEDPKVVEN--INSHL--PDQIRVWGIERTTGSFNCYQMCDSRWY 213 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 214 EYLIPTYSFIPPH 226 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 6/111 (5%) Query: 141 NMRIAAQHLVGRHDFTTFRS-IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 N + + +F+ + + + + ++V +SF+ QIR Sbjct: 430 NQYVGTYNFHNYTILKSFKDASSKRHIKSFKIGTQPIIIHDTEWLSLKVHGQSFMMHQIR 489 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V LV +++ A K P AP GL ++ Y+ Sbjct: 490 KMVAMAALVVRCASPMELIKETYTAA--KISIPKAPSLGLLLEAPVFHNYN 538 >gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980] gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980 UF-70] Length = 599 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + K AI + + RTD Sbjct: 56 HKVAVMIGYAGTGYKGLQINTKEKTIEGDMFKAFVAAGAISKANANDPKKSALVRCARTD 115 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N++L D I + + F+ R Y Sbjct: 116 KGVHAAGNVLSLKLITEDPNVVEN--INSHL--PDQIRVWGIERTTGSFNCYQMCDSRWY 171 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 172 EYLIPTYSFIPPH 184 Score = 39.9 bits (91), Expect = 0.29, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 6/111 (5%) Query: 141 NMRIAAQHLVGRHDFTTF-RSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 N + + + + + + + ++V +SF+ QIR Sbjct: 398 NQYVGTYNYHNYTILKNYSDPSSRRHIKSFKIGPKPIIIHDTEWLSLKVHGQSFMMHQIR 457 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V LV +++ A K P AP GL ++ Y+ Sbjct: 458 KMVAMAALVVRCASPMELIKETYTAA--KISIPKAPSLGLLLEAPVFHNYN 506 >gi|330914180|ref|XP_003296528.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1] gi|311331289|gb|EFQ95392.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1] Length = 599 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 63/358 (17%), Positives = 91/358 (25%), Gaps = 116/358 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------VTGEI-------- 42 + Y G Y G++ KN +I+ + KA+ GE Sbjct: 80 IALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGEKESYERIDR 139 Query: 43 -----------------VVVHGAGRTDSGVHALRQVAHFDLVREWV-------------- 71 GRTD GV A QV + Sbjct: 140 KTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKALQSPNETLET 199 Query: 72 --------------------------PVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 + + LN L + + F ARF Sbjct: 200 NEDENPPSSPASDSNPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNP-PADFSARF 258 Query: 106 SAIRRSYLYRIITRQA---------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 S R Y Y + LD M+ HLVG HDF Sbjct: 259 SCKERRYKYFFTNPCFAPVPGSSGRYNTSSTSPQAMREGWLDINAMKQGCAHLVGLHDFR 318 Query: 157 TFRSIH--CQASSPIRTIDHFDVNSFGNLIE------------------------IRVVA 190 F I Q ++ R I H D+ L + Sbjct: 319 NFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALSTPGLPASEAPKLYSFTLHG 378 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+RS + L L+G G + + K L +A + +A L + Sbjct: 379 SAFLWHQVRSLIAVLFLIGQGLESPDIIPKLLDIEANPTRPKYEMASDAPLVLWDCIF 436 >gi|42572123|ref|NP_974152.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 356 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + P+ LN+ L I R Y Sbjct: 82 KGVSAVGQVVSGRFIVD--PLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVY 139 >gi|18411027|ref|NP_565126.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana] gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana] gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana] gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 463 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG---------AGRTD 52 + +I + G GY G Q+ +I+G +E+A+F + G + RTD Sbjct: 22 QKVAIIFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSARTD 81 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + P+ LN+ L I R Y Sbjct: 82 KGVSAVGQVVSGRFIVD--PLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVY 139 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 1/106 (0%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 + + + T T + + I+ V+ +SF+ QIR Sbjct: 274 CYVGSYNFHNFTTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKM 333 Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +G + + + ++ A ++D P+AP GLY D ++ Sbjct: 334 MGLAVAIMRNCASESLIQSAF-SKDVNITVPMAPEVGLYLDECFFT 378 >gi|261333810|emb|CBH16805.1| tRNA pseudouridine synthase A-like protein,putative [Trypanosoma brucei gambiense DAL972] Length = 588 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA----- 224 RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 479 RTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFEPS 538 Query: 225 --QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 539 RHRFKRERFPTAPAYGLTLWDVEY 562 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 88/280 (31%), Gaps = 60/280 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQK----------------------------------- 22 RY + ++Y G+ + GW RQ Sbjct: 185 TRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGASRGETMG 244 Query: 23 ---NGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVIL 75 + ++ +E+A+ + V V + GV R H D+ ++ Sbjct: 245 SRYHARTV---LEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVI 301 Query: 76 CKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A K ++IL+ ++ FHAR S +RR Y+YRI+ R AP + G W + Sbjct: 302 QRATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVD 361 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD + M+ A+ L G DF F + Sbjct: 362 RHLDVDRMKRFAKALEGTKDFGYFADPKMANAL----------RRAAMSPGGFSTGAVTE 411 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G V GK +EK DR P Sbjct: 412 ENFQPKATGESHRVTRGKAPKVTMEKGPSNLDRAAALPTF 451 >gi|71749392|ref|XP_828035.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei TREU927] gi|70833419|gb|EAN78923.1| tRNA pseudouridine synthase A-like protein [Trypanosoma brucei] Length = 579 Score = 62.2 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 7/84 (8%) Query: 170 RTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA----- 224 RT+D DV + + I V RSFL QIR+ V LK G G W +L++ALQ+ Sbjct: 470 RTVDRLDVVRQDDEVLIWFVGRSFLRHQIRNMVSVLKAAGHGLWNDLELQQALQSGFEPS 529 Query: 225 --QDRKECGPLAPPEGLYFDSVEY 246 + ++E P AP GL VEY Sbjct: 530 RHRFKRERFPTAPAYGLTLWDVEY 553 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 88/280 (31%), Gaps = 60/280 (21%) Query: 2 IRYCMIIEYNGSGYFGW----QRQK----------------------------------- 22 RY + ++Y G+ + GW RQ Sbjct: 176 TRYRVDVQYQGNDFDGWWKSTTRQLFRREVGLDGSITRVPVAEPGTIGNAAGVSRGETMG 235 Query: 23 ---NGSSIQGSIEKAIFLVTGEI-VVVHGAGRTDSGVHALRQVAHFDLVRE---WVPVIL 75 + ++ +E+A+ + V V + GV R H D+ ++ Sbjct: 236 SRYHARTV---LEEALAVALDVNTVRVVAGVIPEVGVSVRRLCCHVDVPSHIELQPRTVI 292 Query: 76 CKALNAYLKISDTISILNLSIV-DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A K ++IL+ ++ FHAR S +RR Y+YRI+ R AP + G W + Sbjct: 293 QRATMWMEKRQQPLAILSYRRCKNQDFHARHSGLRRVYVYRILNRVAPPLFDAGLQWHVD 352 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 + LD + M+ A+ L G DF F + Sbjct: 353 RHLDVDRMKRFAKTLEGTKDFGYFADPKMANAL----------RRAAMSPGGFSTGAVTE 402 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA 234 G V GK +EK DR P Sbjct: 403 ENFQPKATGESHRVTRGKAPKVTMEKGPSNLDRAAALPTF 442 >gi|323346109|gb|EGA80399.1| Pus1p [Saccharomyces cerevisiae Lalvin QA23] gi|323351939|gb|EGA84478.1| Pus1p [Saccharomyces cerevisiae VL3] Length = 508 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 39 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 98 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 99 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 154 Query: 113 LYRIITR 119 Y + T Sbjct: 155 EYLLPTY 161 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 307 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 364 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 365 LLEAPVFEGYN 375 >gi|323335274|gb|EGA76563.1| Pus1p [Saccharomyces cerevisiae Vin13] Length = 545 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 76 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 135 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 136 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 191 Query: 113 LYRIITR 119 Y + T Sbjct: 192 EYLLPTY 198 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 344 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 401 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 402 LLEAPVFEGYN 412 >gi|323302662|gb|EGA56468.1| Pus1p [Saccharomyces cerevisiae FostersB] Length = 544 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 343 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 400 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 401 LLEAPVFEGYN 411 >gi|256272816|gb|EEU07786.1| Pus1p [Saccharomyces cerevisiae JAY291] Length = 544 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 343 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 400 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 401 LLEAPVFEGYN 411 >gi|207340711|gb|EDZ68976.1| YPL212Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 544 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 343 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 400 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 401 LLEAPVFEGYN 411 >gi|6325044|ref|NP_015112.1| Pus1p [Saccharomyces cerevisiae S288c] gi|3122655|sp|Q12211|PUS1_YEAST RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|1370440|emb|CAA97927.1| PUS1 [Saccharomyces cerevisiae] gi|1403091|emb|CAA56698.1| pseudouridine synthase 1 [Saccharomyces cerevisiae] gi|151942589|gb|EDN60935.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] gi|190407751|gb|EDV11016.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a] gi|259149945|emb|CAY86748.1| Pus1p [Saccharomyces cerevisiae EC1118] gi|285815332|tpg|DAA11224.1| TPA: Pus1p [Saccharomyces cerevisiae S288c] Length = 544 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + +++ Y G+GY G Q +I+ ++ K AI + +G A RTD Sbjct: 75 RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + ++ E + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 343 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 400 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 401 LLEAPVFEGYN 411 >gi|194697948|gb|ACF83058.1| unknown [Zea mays] Length = 516 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 20/178 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + + + Sbjct: 77 KRVVLRIGYVGTDYRGLQKQQELGVDSTIESVLESAIFKSGGILESNYGKLQKIGWERSS 136 Query: 50 RTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 RTD GVH+L + + W AL +++ + ++ SI+ Q Sbjct: 137 RTDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVR 196 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSL-----DCENMRIAAQHLVGRHDFTTFR 159 Y + + ++ + + +R Sbjct: 197 RECLYREYFYLLPAEIIGIKDDYSSEEMQEHLSEFNKILKGFEGNHPFHNYTARAKYR 254 Score = 43.3 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + +S +E+ + SF+ QIR VG+ V G +E Sbjct: 341 NASHFRDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDIIE 400 Query: 220 KALQAQDRKECGPLAPPEGLYFDS 243 +L R P+AP E L Sbjct: 401 LSLAKFSRIVL-PIAPSEVLVLKD 423 >gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803] Length = 531 Score = 62.2 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 85/311 (27%), Gaps = 67/311 (21%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT-------GEIVVVHGAGRTDSGV 55 + + Y+G+ Y G +Q N +I+ + A+ V +GRTD GV Sbjct: 93 IAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQHAEASDVHFERSGRTDRGV 152 Query: 56 HALRQVAHFDL----------VREWVPVILCKALNAYLKISDTISILN-----------L 94 A QV F + + L S Sbjct: 153 SAAGQVFSFYVRTNNKGMGPQPIPAPDPRFYRDRRDGLTPPAKPSDSATDDRGADGDLVN 212 Query: 95 SIVDKQFHARFSAIRRSYLYRIIT--------------------RQAPLALEKGRAWLIP 134 + + + Y+ I R + + + Sbjct: 213 AEKEPELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYVYMFGEV 272 Query: 135 KSLDCENMRIAAQHLVG-RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIR------ 187 SL+ M A LVG + + R I + G + Sbjct: 273 GSLNIRRMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFSCFLEIDGQPYDCENDRMAM 332 Query: 188 ---------VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPP 236 V +FL+ QIR L +G + + L + K P+AP Sbjct: 333 KENSTLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNVEQFPGKPDYPIAPG 392 Query: 237 EGLYFDSVEYS 247 E L F+ EY+ Sbjct: 393 ELLLFERAEYT 403 >gi|254583001|ref|XP_002499232.1| ZYRO0E07106p [Zygosaccharomyces rouxii] gi|238942806|emb|CAR30977.1| ZYRO0E07106p [Zygosaccharomyces rouxii] Length = 537 Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTD 52 + ++I Y G+GY G Q +I+ + AI + +G A RTD Sbjct: 75 RKVAVMIGYCGTGYHGMQHNPPNLTIESELFTAFVEAGAISKANSTDLKKNGFMRAARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E + + +N L + I + ++ V+K F R R Y Sbjct: 135 KGVHAGGNLISLKLIIEDP--QIKEKINEKL--PEGIRVWDIKRVNKAFDCRKMCSSRWY 190 Query: 113 LYRIITR 119 Y + T Sbjct: 191 EYLLPTY 197 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 46/170 (27%), Gaps = 15/170 (8%) Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE 140 +Y+ K + YRI + +L + Sbjct: 254 SYVPPPKDQFDGTDPTYHKVKRYKQMENLHRRQYRISQEKLKKFRSTMEQYLGAHNFHNF 313 Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 + + + +T + I++ +SF+ QIR Sbjct: 314 TLGKDFKESSAVRYMKEIKVSEPFVIGDAKTEW----------VSIKIHGQSFMLHQIRK 363 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + L+ + + +A +K P AP GL +S Y+ Sbjct: 364 MISMATLMTRCGCPTDRISEA--YGPQKLNIPKAPALGLLLESPVFDGYN 411 >gi|83317781|ref|XP_731310.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii str. 17XNL] gi|23491305|gb|EAA22875.1| tRNA-pseudouridine synthase I [Plasmodium yoelii yoelii] Length = 497 Score = 61.8 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%) Query: 137 LDCENMRIAAQHLVGRHDFTTFR------SIHCQASSPIRTIDHFDVNSFGNLIEIRVVA 190 D + ++ ++ +G H+F FR ++ NL + + Sbjct: 367 CDIDKIKECSKLFIGYHNFECFRGILKGTEKQRTINTFCNIHFLDIYKLKDNLYQFIIQG 426 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR VG+L VG G D++ AL + APP+GL + Sbjct: 427 DRFLYHMIRIIVGTLIQVGVGILNFQDVKDALYNSKPLKVKLCAPPQGLCLKKI 480 Score = 43.3 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 63/193 (32%) Query: 2 IRYCMIIEYNGSGYFGWQ------------------------------------------ 19 ++I+Y+G+ Y GW Sbjct: 28 TNLILVIDYDGTNYKGWTGIENSSSVYLNAVSGFKNIKRSDNYNANIIEKVEDSDYSFNN 87 Query: 20 RQKNGSSIQGSIEKAIFLVTG---------------EIVVVHGAGRTDSGVHALRQVAHF 64 K ++Q I + + G + G RTD GVHA V + Sbjct: 88 LTKKYETVQNCILNCLLKIHGYGENININNYKETNLKPFEFIGVSRTDKGVHAKEYVCQY 147 Query: 65 DL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +LN L + + + + F+ R+ + + Y Y + R Sbjct: 148 ISYKKLPPFNGNLKKIKLSLNRLLNKDIKVLGIFNAPFN-NFNVRYHNLGKIYTYNVDLR 206 Query: 120 QAPLALEKGRAWL 132 + LE+ +W Sbjct: 207 KPSQPLERNLSWQ 219 >gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Penicillium marneffei ATCC 18224] Length = 571 Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 75 KKVAVMIGYSGTGYHGMQLSPTEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTD 134 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L S I + V K F R Y Sbjct: 135 RGVHAAGNVVSLKLIVEDPDIVQK--INDNL--SPQIRVWGYETVTKGFSCYQLCDSRMY 190 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 191 EYLIPTHCFLPPH 203 Score = 41.8 bits (96), Expect = 0.096, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + + + R + +LD + + F S S Sbjct: 336 YQNAKRAYRIPQNRLQRVQDALDKYIGTRNFHNYTIQKTFRDPSSKRIIKSFVA--NKEP 393 Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP 235 + + + ++V +SF+ QIR V + L+ +E+ K P AP Sbjct: 394 IIINGTEWVSLKVHGQSFMMHQIRKMVAMVALIVRCGCDPKIIEE--SYGPTKLSIPKAP 451 Query: 236 PEGLYFDSVE---YS 247 GL + Y+ Sbjct: 452 GLGLLLEHPIFDSYN 466 >gi|15227735|ref|NP_180591.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|3914486|sp|O22928|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gi|2347206|gb|AAC16945.1| putative pseudouridine synthase [Arabidopsis thaliana] gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana] Length = 510 Score = 61.8 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 20/183 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + + I Y G+ Y G Q Q + +I+G +E AI+ G + + Sbjct: 63 KKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSS 122 Query: 50 RTDSGVHALRQVAHFDLV-----REWVPVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 RTD GVH+L + + P A + + I + ++ +++F R Sbjct: 123 RTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPR 182 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA---QHLVGRHDFTTFRSI 161 R Y Y + + + D + + +R Sbjct: 183 RECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEGEYPFHNYTQRSRYRRK 242 Query: 162 HCQ 164 Q Sbjct: 243 SEQ 245 Score = 40.6 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVA 190 ++ D + A+ L + H + R + + +EI + Sbjct: 292 HVVTPDSDNSQVYSRAKWLYEPDETDKISGAHFRKVFRCR-SGKLENSLGFGFVEISIWG 350 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 SF+ QIR +G+ V + +L R PLAP E L Sbjct: 351 ESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVL-PLAPSEVLIL 400 >gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis] gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis] Length = 377 Score = 61.4 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 54/180 (30%), Gaps = 20/180 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + + + Y G+ Y G Q+Q++ S+I+ +E AIF G + + Sbjct: 54 KKVVLRVGYVGTDYRGLQKQEDEHSLSTIEAELECAIFKAGGILDSNYGNLHKIAWARSS 113 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L + + + +N YL + I + S Sbjct: 114 RTDKGVHSLATMISMKMEIPENAWKEDPNGIALAECVNYYLPDNIRIFSILPSQKSFDPR 173 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSL-DCENMRIAAQHLVGRHDFTTFRSI 161 + + SYL D N + +R Sbjct: 174 RECNLRKYSYLLPAEIIGIKGHFTSAEIDNHISDFNDILNAFEGEHPFHNYTIRSKYRKQ 233 >gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa] Length = 429 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 17 RKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDWARSARTD 76 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + + L++ L S I V F+A+ RR Y Sbjct: 77 KGVSAVGQVVSGRFYIDPPGL--VERLHSNL--SPQFRIFGYKRVTGSFNAKKFCDRRRY 132 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 133 VYLIPVFALDPCSHRDR 149 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 4/109 (3%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + R + S +T + + ++ VV +SF+ QI Sbjct: 249 YYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGI---EFVKCEVVGQSFMLHQI 305 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 R +G + + ++ ALQ +D P AP GLY D ++ Sbjct: 306 RKMIGVAVAIMRNCAPESLIQTALQ-KDVNINVPTAPEVGLYLDECFFT 353 >gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis] gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis] Length = 584 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 18/130 (13%) Query: 2 IRY-----CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHG 47 RY + Y G GY G Q+ +I+G +E+A+F + Sbjct: 49 QRYKRRKMAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVPEQDRGCPKRYDWAR 108 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 + RTD GV A+ QV + + LN+ L I I V F+A+ Sbjct: 109 SARTDKGVSAVGQVISGRFYVDPPGL--VDRLNSIL--PSQIRIFGYKRVTASFNAKKFC 164 Query: 108 IRRSYLYRII 117 RR Y+Y I Sbjct: 165 DRRRYVYLIP 174 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + R + S RT + ++ V+ +SF+ QI Sbjct: 364 YYVGSHNFHNFTTRTKAEDPSAQRYIISFDARTTVTVEGI---EFVKCEVIGQSFMLHQI 420 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 R +G + + + ALQ +D K P AP GLY D ++ Sbjct: 421 RKMIGLAVAIMRNCAPESLISTALQ-KDVKINVPTAPEVGLYLDECFFT 468 >gi|189193015|ref|XP_001932846.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978410|gb|EDU45036.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 599 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 62/358 (17%), Positives = 92/358 (25%), Gaps = 116/358 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAI---FLVTGEIV------------- 43 + Y G Y G++ KN +I+ + KA+ L+T Sbjct: 80 IALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGETESYERIDR 139 Query: 44 ------------------VVHGAGRTDSGVHALRQVAHFDLVREWV-------------- 71 GRTD GV A QV + Sbjct: 140 KTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKAPQSPEETPET 199 Query: 72 --------------------------PVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 + + LN L + + F ARF Sbjct: 200 NEEESPPSSPSSDSKPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNP-PADFSARF 258 Query: 106 SAIRRSYLYRIITRQA---------PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT 156 S R Y Y + LD M+ HLVG HDF Sbjct: 259 SCKERRYKYFFTNPCFAPVPGSSGRYNTSSTPPQAMREGWLDINAMKQGCAHLVGLHDFR 318 Query: 157 TFRSIH--CQASSPIRTIDHFDVNSFGNLIE------------------------IRVVA 190 F I Q ++ R I H D+ L + Sbjct: 319 NFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALTAPGLPASEAPKLYSFTLHG 378 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+RS + L L+G G + + + L +A + +A L + Sbjct: 379 SAFLWHQVRSLIAVLFLIGQGLESPDIIPQLLDIEANPTRPKYEMASDAPLVLWDCIF 436 >gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus] Length = 743 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 23/136 (16%) Query: 2 IRYCMIIEYNGSGYFGWQRQ----KNGSSIQGSIEKAIFLVTG---------EIVVVHGA 48 + +++ Y G+ + GWQ Q +N +++G +E A++ + Sbjct: 29 RKVAIVVGYVGTAFHGWQ-QSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRT 87 Query: 49 GRTDSGVHALRQVAHFDL-------VREWVPVILCKALNAYLKISDTISILNLSIVDKQF 101 RTD GVHA + VA L + LN L D I ++S V K F Sbjct: 88 SRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKL--PDDIRCFSVSKVPKSF 145 Query: 102 HARFSAIRRSYLYRII 117 R R Y Y + Sbjct: 146 RGREECTLREYTYYLP 161 Score = 40.3 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 + I + ++F++ QIR +G G S +E AL+ K PLAP EGL + Sbjct: 450 FVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTP-YKLRVPLAPAEGLVLE 508 >gi|297745794|emb|CBI15850.3| unnamed protein product [Vitis vinifera] Length = 495 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 20/180 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + Sbjct: 63 KKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSS 122 Query: 50 RTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 RTD GVH+L + + W AL Y+ +I SI+ Q Sbjct: 123 RTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDAR 182 Query: 107 AIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 Y + + ++ I + D N + +R Sbjct: 183 RECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRSKYRKQ 242 Score = 38.7 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + + +E+ + SF+ QIR VG+ V L Sbjct: 321 ASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTL 380 Query: 221 ALQAQDRKECGPLAPPEGLYF 241 +L R PLAP E L Sbjct: 381 SLTKFSRIVL-PLAPSEVLIL 400 >gi|225434389|ref|XP_002276856.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 564 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 20/180 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + Sbjct: 63 KKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSS 122 Query: 50 RTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 RTD GVH+L + + W AL Y+ +I SI+ Q Sbjct: 123 RTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDAR 182 Query: 107 AIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 Y + + ++ I + D N + +R Sbjct: 183 RECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRSKYRKQ 242 Score = 38.7 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + + +E+ + SF+ QIR VG+ V L Sbjct: 342 ASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTL 401 Query: 221 ALQAQDRKECGPLAPPEGLYF 241 +L R PLAP E L Sbjct: 402 SLTKFSRIVL-PLAPSEVLIL 421 >gi|147800604|emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera] Length = 602 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 20/180 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M + Y G+ Y G Q Q++ S+I+G +E A+F G + + Sbjct: 63 KKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDRSS 122 Query: 50 RTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 RTD GVH+L + + W AL Y+ +I SI+ Q Sbjct: 123 RTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFDAR 182 Query: 107 AIRRSYLYRIITRQAPLALEKGR-----AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI 161 Y + + ++ I + D N + +R Sbjct: 183 RECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFEGEHPFQNYTIRSKYRKQ 242 Score = 38.7 bits (88), Expect = 0.67, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + + +E+ + SF+ QIR VG+ V L Sbjct: 342 ASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTL 401 Query: 221 ALQAQDRKECGPLAPPEGLYF 241 +L R PLAP E L Sbjct: 402 SLTKFSRIVL-PLAPSEVLIL 421 >gi|302893420|ref|XP_003045591.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256726517|gb|EEU39878.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 616 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 13/128 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q N +I+ + K AI + + RTD Sbjct: 114 RKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCARTD 173 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +NA L + I I + + F + R Y Sbjct: 174 KGVHAAGNVISLKLIIE--DEDIIDKINAEL--PEQIRIWGIQRTNNAFSCYQTCDSRWY 229 Query: 113 LYRIITRQ 120 Y + + Sbjct: 230 EYLMPSYC 237 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECG 231 + + + ++V +SF+ QIR VG L+ ++++ Q Q K Sbjct: 440 NPKPIIINNTEWLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPLKRMDESYQNQ--KMAI 497 Query: 232 PLAPPEGLYFDSV---EYS 247 P AP GL + Y+ Sbjct: 498 PKAPGLGLLLERPVFHNYN 516 >gi|116794266|gb|ABK27072.1| unknown [Picea sitchensis] Length = 212 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 12/80 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLVTG---------EIVVVHGAG 49 + M I Y G+ Y G Q Q++ +I+ +EKAI G + + Sbjct: 83 RKVAMRIGYVGTNYRGLQIQRDSASTITIEDELEKAILKAGGMLESNYGNLHKLGWRRSS 142 Query: 50 RTDSGVHALRQVAHFDLVRE 69 RTD GVH+L V + Sbjct: 143 RTDKGVHSLATVIAMKMEIP 162 >gi|154276726|ref|XP_001539208.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150414281|gb|EDN09646.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 555 Score = 61.1 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 55/332 (16%), Positives = 90/332 (27%), Gaps = 90/332 (27%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGV 55 + Y G Y G+ NG +I+ + KA+ + + V G T+ Sbjct: 92 IALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGVSSTEPST 150 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL--------------------NLS 95 + + + L + N+ + S Sbjct: 151 ATSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRVLPEDIRVLAWCP 210 Query: 96 IVDKQFHARFSAIRRSYLYRII--------------------TRQAPLALEKGRAWLIPK 135 F ARFS R Y Y + Sbjct: 211 NPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEGSGAPHNEQFREG 270 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHC--QASSPIRTIDHF------------------ 175 LD E MR A++L+G HDF F + Q ++ +R I H Sbjct: 271 WLDIEAMRKGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTKPLSYLRQH 330 Query: 176 -------------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTST 216 D +S + I + +FL Q+R L LVG G + Sbjct: 331 EFTTFDTENDKAAANGSIGDPSSNLKVYSITIHGSAFLWHQVRHLAAILFLVGQGLEAPS 390 Query: 217 DLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 + + L + R+ +A L + Sbjct: 391 IIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 422 >gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767] gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii] Length = 528 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 15/131 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN--GSSIQGSIEKAIFL---VTGE------IVVVHGAGR 50 + +I Y G+GY G Q Q N +I+G + +A ++ E A R Sbjct: 71 KKVACMIGYCGTGYNGMQIQNNLDVKTIEGDLFQAFVKAGAISPENADDLKKNGFMRAAR 130 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E + + +N L D I + + +K F R R Sbjct: 131 TDKGVHAAGNVISCKLIIE--DEDILEKINKEL--PDQIRVWGIERTNKSFDCRKMCSSR 186 Query: 111 SYLYRIITRQA 121 Y Y + T Sbjct: 187 VYEYLLPTYSF 197 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 2/107 (1%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + + ++ + + T+ V + I++ +SF+ QIR Sbjct: 317 MKQYEGSHNFHNFTLGKLYKDPSARRYMKLTTVSDPFVIEGTEWVSIKIHGQSFMLHQIR 376 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LV + ++ K P AP GL ++ Y Sbjct: 377 KMISMAVLVIRTGCPISRIQDCF--GPTKINIPKAPALGLLLENPVY 421 >gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720] Length = 229 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 15/123 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVH 56 I Y G+GY G Q Q + +I+ I KA + A RTD GVH Sbjct: 2 IGYCGTGYNGMQIQNNPDVKTIEAEIFKAFIAAGAVSQENSTDLKKNGFMRAARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V L+ E + +N++L + I + + V++ F R R Y Y + Sbjct: 62 AAGNVISCKLILE--DEDIMHKINSHL--PEKIRLWGIERVNRSFDCRKLCSSRVYEYLL 117 Query: 117 ITR 119 T Sbjct: 118 PTH 120 >gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1] Length = 568 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + K +N L I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDP--DIVKKINEQLC--PQIRVWDVQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRIITRQAPLALEKGR 129 Y I + Sbjct: 195 EYLIPSYCFLPPHPSTY 211 Score = 39.9 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 8/102 (7%) Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIRSFVGSLKLV 208 + A I+T + N E +V +SF+ QIR V ++ Sbjct: 351 YNYTIQKTHGDPSAKRYIKTFQVDRNSILINGTEWLSLKVHGQSFMMHQIRKMVAMATML 410 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + + K P AP GL + Y+ Sbjct: 411 VRAGGDPARIVE--SYGPTKIAVPKAPGLGLLLERPIFDGYN 450 >gi|116208668|ref|XP_001230143.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51] gi|88184224|gb|EAQ91692.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51] Length = 584 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 13/127 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + AI + + RTD Sbjct: 108 RKVAVLIGYAGTGYHGIQINHKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N +L + I I + F A + R Y Sbjct: 168 KGVHAAGNVLSLKLIVEDEDIVTK--INEHL--PEQIRIWGIHRTSNGFSAYQACESRWY 223 Query: 113 LYRIITR 119 Y + + Sbjct: 224 EYLMPSY 230 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 8/111 (7%) Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI---RVVARSFLHTQIR 199 + A I++ E V +SF+ QIR Sbjct: 378 NSYLGTRNYHNYTVMKSHKDASAMRHIKSFQVNTTPITIGDTEWLSLMVHGQSFMMHQIR 437 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V +V + + + R+ P AP GL + Y+ Sbjct: 438 KMVAMAVMVVRCGAPLSTISE--SYGPRRISIPKAPGLGLMLERPMFTGYN 486 >gi|325182026|emb|CCA16479.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 97 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 7/61 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-----SIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVH 56 Y M I Y G+ + GWQRQ S S+Q IE ++ E V V+ RTD+G H Sbjct: 24 YGMSIAYYGTDFIGWQRQPAASKPGFFSVQQIIEDSLSRALSKSERVNVNAVSRTDAGTH 83 Query: 57 A 57 A Sbjct: 84 A 84 >gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293] gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293] gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163] Length = 577 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + K +N L I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIIEDPDL--IKKINEKLC--PQIRVWDIQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRIITRQAPLALEKGR 129 Y I + Sbjct: 195 EYLIPSYCFLPPHPSTY 211 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 T + + + + + + ++V +SF+ QIR Sbjct: 354 KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK 413 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V ++ + K P AP GL + Y+ Sbjct: 414 MVAMATMLVRAGCDPQRIVD--SYGPTKIAIPKAPGLGLLLERPIFDGYN 461 >gi|46124417|ref|XP_386762.1| hypothetical protein FG06586.1 [Gibberella zeae PH-1] Length = 602 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q N +I+ + K AI + + RTD Sbjct: 107 RKVAVMIGYAGTGYKGMQVNGNEKTIEADLFKAFVAAGAISKANADDPKKSSLVRCARTD 166 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + +NA L + I I L + F + R Y Sbjct: 167 KGVHAAGNVISLKLIIE--DEDIVDKINAEL--PEQIRIWGLQRTNNAFSCYQTCDSRWY 222 Query: 113 LYRIITRQ 120 Y + + Sbjct: 223 EYLMPSYC 230 Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 6/111 (5%) Query: 141 NMRIAAQHLVGRH-DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 NM ++ + F + + + + + ++V +SF+ QIR Sbjct: 393 NMYNGTRNFHNYTVQKSFFDASAKRHIKSFIVNPKPIIINDTEWLSLKVHGQSFMMHQIR 452 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 VG L+ ++++ Q Q K P AP GL + Y+ Sbjct: 453 KMVGLASLIVRCGTPMERIKESYQNQ--KMAIPKAPGLGLLLERPVFHNYN 501 >gi|84997902|ref|XP_953672.1| tRNA pseudouridine synthase [Theileria annulata] gi|65304669|emb|CAI72994.1| tRNA pseudouridine synthase, putative [Theileria annulata] Length = 478 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 19/100 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG---------EIVV 44 +Y + Y G+GY G+Q+Q +++G++E +F + + Sbjct: 69 TKYVIAFGYLGTGYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQ 128 Query: 45 VHGAGRTDSGVH--ALRQVAHFDLVREWVPVILCKALNAY 82 + RTD GVH F++ E VP +N + Sbjct: 129 MSKCSRTDKGVHAACTYLGGRFNIEMEDVPEDHVPQVNNH 168 Score = 39.9 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 4/101 (3%) Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 I+ + + +++I +V +SFL+ QIR + V Sbjct: 312 FHNFTVKQKEEINNTSRFIHKISIKSHKIQELEVVKILIVGQSFLYNQIRKMISLALQVY 371 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 G +E +L + L P EGL Y+ Sbjct: 372 LGIAPKNSVEFSLN-KSHFLNINLVPSEGLILHHPYFDSYN 411 >gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp. melo] Length = 519 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + Y G GY G Q+ +I+ +E+A++L + + RTD Sbjct: 55 RKVAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTD 114 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P LN+ L S I I V F+A+ RR Y Sbjct: 115 KGVSAVGQVVSG--RFYIDPPGFVDRLNSNL--SPQIRIFGYKRVTASFNAKKFCDRRRY 170 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 171 VYLIPVFALDPNCHRDR 187 Score = 48.7 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ VV +SF+ QIR +G + + +EKALQ +D P AP GLY D Sbjct: 374 FVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQ-KDVNINVPTAPEVGLYLD 432 Query: 243 SVEYS 247 ++ Sbjct: 433 ECLFT 437 >gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor] Length = 520 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 15/130 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 R + I Y G+ Y G Q+Q+ S+I+ +E AIF G + V + Sbjct: 77 KRVVLRIGYIGTEYRGLQKQRELGVDSTIESVLESAIFKSGGILESNYGKLQKVGWERSS 136 Query: 50 RTDSGVHALRQVAHFDLVRE---WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 RTD GVH+L + + W AL +++ + ++ SI+ Q Sbjct: 137 RTDKGVHSLATMISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVR 196 Query: 107 AIRRSYLYRI 116 Y Sbjct: 197 RECLYREYFY 206 Score = 45.3 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + +S +E+ + SF+ QIR VG+ V G +E Sbjct: 340 NASHFRDIITCSCGELQTSSGIQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKDIIE 399 Query: 220 KALQAQDRKECGPLAPPEGLYFDS 243 +L R P+AP E L Sbjct: 400 LSLAKFSRIVL-PIAPSEVLILKD 422 >gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL 181] Length = 577 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLIGYAGTGYHGMQLSDKEKTIEGDLFTAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + K +N L I + ++ + +K F R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDPDL--IKKINEKLC--PQIRVWDIQVTNKGFSCYQMCDSRVY 194 Query: 113 LYRIITRQAPLALEKGR 129 Y I + Sbjct: 195 EYLIPSYCFLPPHPSTY 211 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 T + + + + + + ++V +SF+ QIR Sbjct: 354 KYVGTNNFYNYTIQKTYTDPSAKRFIKSFKVDRNPIIINGTEWLSLKVHGQSFMMHQIRK 413 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V ++ + K P AP GL + Y+ Sbjct: 414 MVAMATMLVRAGCDPQRIVD--SYGPTKIAIPKAPGLGLLLERPIFDGYN 461 >gi|158298879|ref|XP_319023.4| AGAP009903-PA [Anopheles gambiae str. PEST] gi|157014098|gb|EAA14028.4| AGAP009903-PA [Anopheles gambiae str. PEST] Length = 457 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 81/243 (33%), Gaps = 46/243 (18%) Query: 50 RTDSGVHALRQVAHFDLVREWVPVILCKAL-----NAYLKISDTISILNLSIVDKQFHAR 104 RTD+GVHAL H DL R + A+ K ++ IL+ V FHAR Sbjct: 11 RTDTGVHALHNTVHVDLQRPNGKPYDSDRITKTLNRAFEKDGQSLRILSTVRVPASFHAR 70 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD---------- 154 A R+YLYR+ + A E GR L Sbjct: 71 LCAKSRTYLYRLAVLKREYARESGRQQHPHARFIPIEEHDRCYFLGHSEFDINAFASVAR 130 Query: 155 ----FTTFRSIHCQASSPIRT------------------------IDHFDVNSFGNLIEI 186 FR+ A R + + + ++ Sbjct: 131 MFEGMHDFRTFMAVAKGNPRQQEAMHSLRRIDQITVERGHTMTAAFNRERTEHYYDFWDV 190 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEGLYFDS 243 R+ RSFL+ Q+R VG+ +G+ T D+ + L + +AP LY Sbjct: 191 RIRGRSFLYRQVRRMVGAWVAAAEGRITERDIYRMLTVPSQNSWCSNVFVAPAYALYLCH 250 Query: 244 VEY 246 VEY Sbjct: 251 VEY 253 >gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group] Length = 516 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 20/178 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + Sbjct: 72 KRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSS 131 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L + + +N+ L + + + + Sbjct: 132 RTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVR 191 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE-NMRIAAQHLVGRHDFTTFR 159 YL + +R Sbjct: 192 RECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTARAKYR 249 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 358 QFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL-PIAPSEVLVL 416 Query: 242 DS 243 Sbjct: 417 RD 418 >gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group] gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa Japonica Group] gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group] Length = 516 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 20/178 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + Sbjct: 72 KRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSS 131 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L + + +N+ L + + + + Sbjct: 132 RTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVR 191 Query: 103 ARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCE-NMRIAAQHLVGRHDFTTFR 159 YL + +R Sbjct: 192 RECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTARAKYR 249 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 358 QFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL-PIAPSEVLVL 416 Query: 242 DS 243 Sbjct: 417 RD 418 >gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group] Length = 722 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 19/130 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTG---------EIVVVHGAG 49 R + + Y G+ Y G Q+Q+ S+I+ +E AIF G + V + Sbjct: 72 KRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKVGWERSS 131 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GVH+L + + +N+ L + + + + Sbjct: 132 RTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVR 191 Query: 103 ARFSAIRRSY 112 Y Sbjct: 192 RECLYREYLY 201 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 564 QFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL-PIAPSEVLVL 622 Query: 242 DS 243 Sbjct: 623 RD 624 >gi|312221288|emb|CBY01228.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans] Length = 597 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 87/365 (23%), Gaps = 123/365 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G++ KN +I+ + KA+ Sbjct: 72 IALKFAYLGQRYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTQGDATGYSRVDRK 131 Query: 38 -----------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKA-------- 78 V E GRTD GV A QV + KA Sbjct: 132 TFAAWDREGADVNWEGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKTAKAQDELSASE 191 Query: 79 -----------------------------------LNAYLKISDTISILNLSIVDKQFHA 103 LN L + + F A Sbjct: 192 QAKTSEEPISMADSEPETEGKSFNDLTDELPYIQHLNRVLPPDIRVYAWCPNPPP-DFSA 250 Query: 104 RFSAIRRSYLYRIITR-----------QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 RFS R Y Y LD E MR Q L+G Sbjct: 251 RFSCKERRYKYFFTNPSFAPVPGSSGVYNTHTSSPTATRTREGWLDIEAMRKGCQQLIGL 310 Query: 153 HDFTTFRSIHCQAS--SPIRTIDHFDV---------------------------NSFGNL 183 HDF F I + R I H D+ L Sbjct: 311 HDFRNFCKIDASKQLSNFQRRIFHADIEEVSPLSIPSFLSHPALQSPWANSPAVEQQPKL 370 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYF 241 + +FL Q+RS + L L+G G + + L A + +A L Sbjct: 371 YSFTLHGSAFLWHQVRSLIAVLFLIGQGLEPPSLISSLLDISANPTRPKYEMASDAPLVL 430 Query: 242 DSVEY 246 + Sbjct: 431 WDCIF 435 >gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio] Length = 386 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 31/232 (13%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+ Q+N ++++ + +A+ + H GRTD GV A Sbjct: 60 VALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKLIQDRQTSCYHRCGRTDKGVSAF 119 Query: 59 RQVAHFDLVREWV---------------------PVILCKALNAYLKISDTISILNLSIV 97 QV DL + K LN L I IL + V Sbjct: 120 SQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVL--PQDIRILQWAPV 177 Query: 98 DKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTT 157 + F ARF R+Y Y L L A + D N+ ++ Sbjct: 178 ESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDV---EKNPRKP 234 Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 S+ + VN E + +F +++ V + L+G Sbjct: 235 QYSMAVDYPLALYDCHFEGVNWRNETEEEIHILNTFHQHWVQNAVKTQILLG 286 >gi|72390962|ref|XP_845775.1| pseudouridylate synthase I [Trypanosoma brucei TREU927] gi|62175816|gb|AAX69943.1| pseudouridylate synthase I, putative [Trypanosoma brucei] gi|70802311|gb|AAZ12216.1| pseudouridylate synthase I, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 618 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 19/165 (11%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+ + G Q Q + +++G + +A+ V+GE + RT Sbjct: 26 LCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEHHFARSCRT 85 Query: 52 DSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + L + LNA+L + + + + D Sbjct: 86 DRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTVMGDFIPRFCCV 145 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + Y+ + +P + P++++ R + Sbjct: 146 SRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFID 190 Score = 40.6 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 ++ RSFL IR VG + V G + +++ L A+ C PLAP LY Sbjct: 316 FQIEGRSFLFNMIRKIVGLIIAVLRGARE-SLMQETLSAERHALC-PLAPGSFLYLFHSF 373 Query: 246 YS 247 Y+ Sbjct: 374 YT 375 >gi|326478893|gb|EGE02903.1| tRNA pseudouridine synthase [Trichophyton equinum CBS 127.97] Length = 582 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E R + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFRERQAEVESYWEETDKKHIQP 270 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E+ Q+ + P AP GL + Sbjct: 412 VHGQSFMMHQIRKMVAMVALLVRCGADIKRIEE--SYQNSRIPIPKAPGLGLLLERPIFD 469 Query: 245 EYS 247 Y+ Sbjct: 470 GYN 472 >gi|261329198|emb|CBH12177.1| pseudouridylate synthase I, putative [Trypanosoma brucei gambiense DAL972] Length = 618 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 19/165 (11%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+ + G Q Q + +++G + +A+ V+GE + RT Sbjct: 26 LCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEHHFARSCRT 85 Query: 52 DSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + L + LNA+L + + + + D Sbjct: 86 DRGVHAVRNLVCLFVPNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTVMGDFIPRFCCV 145 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 + Y+ + +P + P++++ R + Sbjct: 146 SRIYRYMIPVYALLSPCSSWNEFYAEFPQAVETLRCRAQGGSFID 190 Score = 39.1 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 ++ RSFL IR VG + V G + +++ L A+ C PLAP LY Sbjct: 316 FQIEGRSFLFNMIRKIVGLIIAVLRGARE-SLMQETLSAERHALC-PLAPDSFLYLFHSF 373 Query: 246 YS 247 Y+ Sbjct: 374 YT 375 >gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 557 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 58 RKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P + LN+ L + R Y Sbjct: 118 KGVSAVGQVVSG--RFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCDRRRYVY 175 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ VV +SF+ QIR +G V + +E A + +D + P+AP GLY Sbjct: 365 DFVKCEVVGQSFMLHQIRKMIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYL 423 Query: 242 DSVEYS 247 D ++ Sbjct: 424 DECFFT 429 >gi|18394855|ref|NP_564112.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens gi|4455035 and contains tRNA pseudoridine synthase PF|01416 domain. ESTs gb|T76494, gb|W43440 come from this gene [Arabidopsis thaliana] gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana] gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana] gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Length = 549 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 + ++ + G GY G Q+ +I+G +E+A+F + RTD Sbjct: 58 RKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARSARTD 117 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV P + LN+ L D I + V F ++ RR Y Sbjct: 118 KGVSAVGQVVSG--RFYVDPPGFVERLNSKL--PDQIRVFGYKRVAPSFSSKKFCDRRRY 173 Query: 113 LYRII 117 +Y I Sbjct: 174 VYLIP 178 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ VV +SF+ QIR +G + + +E + + +D + P+AP GLY Sbjct: 367 DFVKCEVVGQSFMLHQIRKMIGLAVAIMRNYAPESLIEASFK-KDVRINVPMAPEVGLYL 425 Query: 242 DSVEYS 247 D ++ Sbjct: 426 DECFFT 431 >gi|71033963|ref|XP_766623.1| tRNA pseudouridine synthase [Theileria parva strain Muguga] gi|68353580|gb|EAN34340.1| tRNA pseudouridine synthase, putative [Theileria parva] Length = 475 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 17/77 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTG---------EIVV 44 +Y + Y G+ Y G+Q+Q +++G++E +F + + Sbjct: 69 TKYVISFGYVGTAYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKLQ 128 Query: 45 VHGAGRTDSGVHALRQV 61 + RTD GVHA Sbjct: 129 MSKCSRTDKGVHAACTY 145 Score = 42.2 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 8/216 (3%) Query: 35 IFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL 94 + V E + R V R++ +I L+ + + Sbjct: 198 LNSVLPEDIRCFKIQR----VTKGFDARTLCSKRKYEYIIPEWILSKKFVVPNEDHENLF 253 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 ++ F L ++ + E + + K L+ H Sbjct: 254 RNLELFFEENLKTRDTIKLSKLNESLYEVKGEYEKTEIDHKRLEEILNFYQGTHSFHNFT 313 Query: 155 FTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT 214 I+ + + D ++++I +V +SFL+ QIR + V Sbjct: 314 VKQKEDINNSSRFIHKIYIKSDKLQELDVVKILIVGQSFLYNQIRKMISLALQVYLKIAP 373 Query: 215 STDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 LE +L + L P EGL Y+ Sbjct: 374 KNSLEFSLN-KSHILNINLVPSEGLILHHPYFDHYN 408 >gi|326469581|gb|EGD93590.1| tRNA pseudouridine synthase [Trichophyton tonsurans CBS 112818] Length = 582 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 14/173 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH 162 L + + L + + K D E R + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFRERQAEVESYWEETDKKHIQ 269 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E+ Q+ + P AP GL + Sbjct: 412 VHGQSFMMHQIRKMVAMVALLVRCGADIKRIEE--SYQNSRIPIPKAPGLGLLLERPIFD 469 Query: 245 EYS 247 Y+ Sbjct: 470 GYN 472 >gi|221057031|ref|XP_002259653.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809725|emb|CAQ40427.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 573 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 + + D E M+ ++ +G+H+F F + ++ Sbjct: 426 HCLHIINREGGISSTIPCDIEKMKECSKLFIGQHNFEFFCGTLKGTEKERKVNPFCNIYY 485 Query: 180 ------FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 N+ + + FL+ IR VG+L VG G D++ AL + + Sbjct: 486 LELHELRSNIYQFVIQGDRFLYHMIRIIVGTLLQVGVGLLQYQDVQDALHFRKPLKVKLC 545 Query: 234 APPEGLYFDSV 244 AP +GL V Sbjct: 546 APAQGLCLAKV 556 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 57/180 (31%), Gaps = 50/180 (27%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGS----------------------------SIQGSIEK 33 ++++Y+G+ Y GW +N S ++Q +I Sbjct: 103 TNILLVVDYDGTNYSGWTGVENCSDIYLRATRNYKNEITGKKKITKGDSKYDTVQNTILN 162 Query: 34 AIFLVTG----------------EIVVVHGAGRTDSGVHALRQVAHF-----DLVREWVP 72 + + G + G RTD GVHA V + + Sbjct: 163 CLLQIHGYGYQVKREEEDMKSNLKAFEFIGVSRTDKGVHAKEYVCQYVSYEKPPPCDGNL 222 Query: 73 VILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 + ALN L I + + F+ RF+ + + Y Y R LE+ AW Sbjct: 223 HKIKMALNGLLNKDIRILGVLNAPFP-DFNVRFNNLGKIYTYNFDIRIPSQPLERNYAWQ 281 >gi|169806638|ref|XP_001828063.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|161779191|gb|EDQ31215.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 347 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 87/286 (30%), Gaps = 41/286 (14%) Query: 1 MIR-YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGR 50 M R + Y G Y G Q ++++ + + + + + + + A R Sbjct: 1 MKRKIAFLWGYCGITYSGIQFNNEINTLEKKLIDILCKLQYISEKNAESAQKIKMKSASR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GV A+ V + +E I N + K + + + + Sbjct: 61 TDKGVSAIFNVTICKINQELTENINQILKNEFSKAGFILYNIARVPKTFIPYRSARSREY 120 Query: 111 SYL-----------------------YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 Y Y I + + + + Sbjct: 121 KYFIPIGVLNKNIAKSQIDIMQSSENYNISIEKFKHDTFDWLNKSTSNTQIIDKLNFILN 180 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTID----HFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 G HDF F + + Q ++ + +E+ + SF+ QIR + Sbjct: 181 LFHGNHDFHNFTTQNVQGTTIRYIKHIYANSIKKINGIEYVEVFLHGDSFIMHQIRKMIA 240 Query: 204 SLKLVGDGKWTSTDLEK---ALQAQDRKECGPLAPPEGLYFDSVEY 246 + +T +E+ + +++ P AP E LY ++ + Sbjct: 241 FAIFMCRNYDDNTIIEQYYNIIFSKN-NYYIPKAPSEYLYLYNIHF 285 >gi|315050550|ref|XP_003174649.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893] gi|311339964|gb|EFQ99166.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893] Length = 582 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 100 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 159 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N L + + + + + Y Sbjct: 160 KGVHAAGNVVSLKLIIEDPDVVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 217 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E + + + T + I Sbjct: 218 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFKERQAEVESYWEETDKKHIQP 271 Score = 36.0 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ + + Q+ + P AP GL + Sbjct: 412 VHGQSFMMHQIRKMVAMVALLVRCGADINRINE--SYQNSRIPIPKAPGLGLLLERPIFD 469 Query: 245 EYS 247 Y+ Sbjct: 470 GYN 472 >gi|327303396|ref|XP_003236390.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] gi|326461732|gb|EGD87185.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] Length = 580 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLSPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E + + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMDEMAEKHGDMEAFKERQAEVESYWEETDKKHIQP 270 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E+ Q+ + P AP GL + Sbjct: 410 VHGQSFMMHQIRKMVAMVALLVRCGADIKRIEE--SYQNSRIPIPKAPGLGLLLERPIFD 467 Query: 245 EYS 247 Y+ Sbjct: 468 GYN 470 >gi|157822927|ref|NP_001102169.1| tRNA pseudouridine synthase-like 1 [Rattus norvegicus] gi|149024843|gb|EDL81340.1| similar to pseudouridylate synthase-like 1, isoform CRA_a [Rattus norvegicus] Length = 127 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGL 239 + ++SFL+ Q+R L VG G T ++ L++QD K +AP GL Sbjct: 54 QFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGL 113 Query: 240 YFDSVEY 246 + SV Y Sbjct: 114 FLKSVLY 120 >gi|149024844|gb|EDL81341.1| similar to pseudouridylate synthase-like 1, isoform CRA_b [Rattus norvegicus] Length = 127 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGL 239 + ++SFL+ Q+R L VG G T ++ L++QD K +AP GL Sbjct: 54 QFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPAHGL 113 Query: 240 YFDSVEY 246 + SV Y Sbjct: 114 FLKSVLY 120 >gi|302656568|ref|XP_003020036.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517] gi|291183816|gb|EFE39412.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517] Length = 570 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E + + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFKERQAEVESYWEETDKKHIQP 270 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E+ Q+ + P AP GL + Sbjct: 410 VHGQSFMMHQIRKMVAMVALLVRCGADIKRIEE--SYQNSRIPIPKAPGLGLLLERPIFD 467 Query: 245 EYS 247 Y+ Sbjct: 468 GYN 470 >gi|302509324|ref|XP_003016622.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371] gi|291180192|gb|EFE35977.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371] Length = 573 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI V + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCPTEKTIEGDLFAAFVAANAISKANAVDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E + + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFKERQAEVESYWEETDKKHIQP 270 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E+ Q+ + P AP GL + Sbjct: 413 VHGQSFMMHQIRKMVAMVALLVRCGADIKRIEE--SYQNSRIPIPKAPGLGLLLERPIFD 470 Query: 245 EYS 247 Y+ Sbjct: 471 GYN 473 >gi|114550574|ref|XP_001150260.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Pan troglodytes] Length = 102 Score = 59.5 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--K 228 T + + ++SFL+ Q+R L VG G ++ L++QD K Sbjct: 8 TPTGTCFSRKLRFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAHVKTILESQDPLGK 67 Query: 229 ECGPLAPPEGLYFDSVEY 246 +AP GL+ SV Y Sbjct: 68 HQTRVAPAHGLFLKSVLY 85 >gi|328850113|gb|EGF99282.1| hypothetical protein MELLADRAFT_45767 [Melampsora larici-populina 98AG31] Length = 615 Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 35/151 (23%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTD 52 + +++ Y G GY G Q +I+G + KA V + A RTD Sbjct: 128 RKVAVLLGYYGKGYQGSQVNPGMKTIEGEVFKAFVKAGCVSEDNSAHPNKVGLQRAARTD 187 Query: 53 SGVHALRQVAHFDL------------------------VREWVPVILCKALNAYLKISDT 88 + VHA + L E + L K +N++L + Sbjct: 188 ANVHAGCNLICLKLILDPPSLKESSDITAESSETKTCGDPEHHSLPLMKHINSFL--PEE 245 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 I + L V FHAR R+Y Y + T Sbjct: 246 IRLWGLERVQNSFHARTLCDSRTYEYSLPTY 276 Score = 41.4 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + + I ++ +SF+ QIR +G + L+ + T + + + P Sbjct: 405 ESEGDPATEWISVKFYGQSFMLHQIRKMIGLIILLCRTRTPCTLIPEL--YGPVRVRIPK 462 Query: 234 APPEGLYFDSVE---YS 247 AP GL Y+ Sbjct: 463 APGLGLILHHPHFDGYN 479 >gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa] gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa] Length = 426 Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTD 52 + + + Y G GY G Q+ +I+G +E+A+F + + RTD Sbjct: 1 RKIAIFLTYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSARTD 60 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GV A+ QV + + + L++ L S I I V F+A+ RR Y Sbjct: 61 KGVSAVGQVVSGRFYIDPPGL--VERLHSNL--SPQIRIFGYKRVTGSFNAKKFCDRRRY 116 Query: 113 LYRIITRQAPLALEKGR 129 +Y I + R Sbjct: 117 VYLIPVFALNPCSHRDR 133 Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%) Query: 142 MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF-----GNLIEIRVVARSFLHT 196 RI +L + + S R I FD + ++ VV +SF+ Sbjct: 250 NRILNYYLGSHNFHNFTTRTKAEDPSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSFMLH 309 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 QIR +G + + + ++ ALQ ++ P AP GLY D ++ Sbjct: 310 QIRKMIGVAVAIMRNCASESLIQTALQ-KNVNINVPTAPEVGLYLDECFFT 359 >gi|67525425|ref|XP_660774.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4] gi|40744565|gb|EAA63741.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4] Length = 625 Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 52/357 (14%), Positives = 82/357 (22%), Gaps = 115/357 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G + N +I+ + KA+ Sbjct: 128 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 187 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHF--------------------------- 64 ++ E AGRTD GV A QV Sbjct: 188 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 247 Query: 65 -----DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 D + LN L + + + F AR+S R Y Y Sbjct: 248 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNP-PEDFDARYSCRERHYKYFFTQP 306 Query: 120 QAPL---------------------------------ALEKGRAWLIPKSLDCENMRIAA 146 E + +D Sbjct: 307 AFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENF 366 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHF---------------DVNSFGNLIEIRVVAR 191 + ++ R D + R V + + Sbjct: 367 ERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQGS 426 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+R VG L LVG G + + + + L RK +A L + + Sbjct: 427 AFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVF 483 >gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe 972h-] gi|74676179|sp|O94295|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces pombe] Length = 451 Score = 59.1 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL--------VTGEIVVVHGAGRTDS 53 +R +++ Y+G GY G Q +I+G + + + E + + A RTD Sbjct: 39 VRIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDK 98 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GVH LR + +L + I + I + ++ K F+ R S R+Y Sbjct: 99 GVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYE 158 Query: 114 YRII 117 Y I Sbjct: 159 YLIP 162 >gi|121706104|ref|XP_001271315.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1] gi|119399461|gb|EAW09889.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1] Length = 604 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 56/352 (15%), Positives = 82/352 (23%), Gaps = 111/352 (31%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ I KA+ Sbjct: 112 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEIWKAMRRTRLIFPTDAEPFDDSRGPRAL 170 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQ-----------------------VAHFDLVREW 70 ++ E AGRTD GV A Q + D E Sbjct: 171 KPYSLSWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPATEVTSDVDMTGLDAPAED 230 Query: 71 VPV------ILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL- 123 LN L I F ARFS R Y Y Sbjct: 231 TWDDIADEIPYISMLNRVLPEDIRILAWCPQPPP-GFDARFSCRERQYKYFFTQPAFSPT 289 Query: 124 ------------------------------------ALEKGRAWLIPKSLDCENMRIAAQ 147 E + LD + Sbjct: 290 PGPLGLALQAVDSANKIPAKYREGWLDIDAMREAAKHFEGVHDFRNFCKLDTSKQIENFE 349 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG-----------NLIEIRVVARSFLHT 196 ++ D H + NS + + +FL Sbjct: 350 RIIYHADIELVDPKHHPLGYVNQPGFQASENSVVGADTVAQATAAQVYVFNLHGSAFLWH 409 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYFDSVEY 246 Q+R V L LVG G + + + + L +++ RK +A L + + Sbjct: 410 QVRHMVSILFLVGQGLESPSIVAELLDVSKNPRKPTYEMASDAPLVLWNCIF 461 >gi|301618506|ref|XP_002938660.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Xenopus (Silurana) tropicalis] Length = 331 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 27/222 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSS---IQGSIEKAIFLVTGE-IVVVHGAGRTDSGVHAL 58 RY + +Y G+ Y G S +Q +E A + V + RTDSGVHA+ Sbjct: 7 RYLVFFQYYGTKYSGVMETPVTQSVLGVQNYLEMAAQKLRPVGTVKFFISSRTDSGVHAI 66 Query: 59 RQVAHFDL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 AH D+ + IL +ALN +L+ + I +L V FHAR A+ R+Y+ Sbjct: 67 CNSAHVDIQRANGKPPFTEDILVQALNHHLQ-PEPIRLLKAVRVCDNFHARHKALSRTYV 125 Query: 114 YRIITRQAP---LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA----- 165 YR+ + E+ W +P SL+ + A++ L+G H+F+ FRS + + Sbjct: 126 YRVAAGCSHSELPVFEENLCWAVPGSLNVAAIHEASEMLLGTHNFSAFRSANSENVFKSP 185 Query: 166 ---------SSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 + + H + ARSFL+ Q+ Sbjct: 186 IKTLQQADITPSSGILTHHWQYRNLQFWDFTFRARSFLYKQV 227 >gi|241956578|ref|XP_002421009.1| tNA-uridine isomerase, putative; tRNA pseudouridine synthase, putative; tRNA pseudouridylate synthase, putative [Candida dubliniensis CD36] gi|223644352|emb|CAX41165.1| tNA-uridine isomerase, putative [Candida dubliniensis CD36] Length = 488 Score = 59.1 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 15/129 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGR 50 + +++ Y GSGY G Q Q N +I+ I A+ + A R Sbjct: 39 RKVAVMLGYCGSGYNGMQVQNDPNVKTIEKDIYDAMTKAGAISLENSVDLKKSGFQRAAR 98 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V ++ E +I +N L I I + K F R R Sbjct: 99 TDKGVHAAGNVISLKMIIEDPNIINK--INDLL--PKQIRIWGIQRTTKGFDCRKCCSSR 154 Query: 111 SYLYRIITR 119 Y Y + T Sbjct: 155 IYEYLLPTF 163 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 5/111 (4%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + F+ I V I I++ +SF+ QIR Sbjct: 276 MKQYEGTHNFHNFTIGKPFKDTSANRFIIKTLISDPFVIEGTEWISIKIHGQSFMLHQIR 335 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + L+ S + Q++ K P AP GL ++ Y+ Sbjct: 336 KMIAMATLIIRLNLPSNIINNFFQSK--KINIPKAPALGLLLENPVFDGYN 384 >gi|194389944|dbj|BAG60488.1| unnamed protein product [Homo sapiens] Length = 142 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGL 239 + ++SFL+ Q+R L VG G ++ L++QD K +AP GL Sbjct: 57 RFWNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGL 116 Query: 240 YFDSVEY 246 + SV Y Sbjct: 117 FLKSVLY 123 >gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae] Length = 312 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 56/170 (32%), Gaps = 29/170 (17%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G+Q Q+ ++I+ + +A+ + H GRTD GV A Sbjct: 70 VALKVAYLGWSYDGFQSQETTDNTIEARLFEALTKTRLIEKRQSSNYHRCGRTDKGVSAF 129 Query: 59 RQVAHFDLV----------------------REWVPVILCKALNAYLKISDTISILNLSI 96 QV DL + + LN L I +L + Sbjct: 130 GQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVL--PPDIRVLAWAP 187 Query: 97 VDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAA 146 VD F ARFS +R+Y Y + + D N Sbjct: 188 VDPDFSARFSCQQRTYKYFFPKGNLDIQSMHLAGQKLVGEHDFRNFCKMD 237 >gi|169604989|ref|XP_001795915.1| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15] gi|160706683|gb|EAT86574.2| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15] Length = 475 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 79/351 (22%), Gaps = 110/351 (31%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFLV-TGEIVVVHG----------- 47 + Y G Y G++ KN +I+ + KA+ + G Sbjct: 74 IALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTTGDTADYNKADRK 133 Query: 48 ---------------------AGRTDSGVHALRQVAHFDLVREWV--------------- 71 GRTD GV A QV + Sbjct: 134 TFATWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKQPAKEPESQENP 193 Query: 72 --------------------------PVILCKALNAYLKISDTISILNLSIVDKQFHARF 105 + + LN L + + + F ARF Sbjct: 194 PAAEDELDILDSEPDAATKHFNEVTDELPYIQLLNRVLPPDIRVYAWCPNP-PENFSARF 252 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD---------CENMRIAAQHLVGRHDFT 156 S R Y Y + P S + + L + Sbjct: 253 SCKERRYKYFFTNPCFAPVPGSAGTYHTPSSPMREGTLDIAAMQLACESLIGLHDFRNMC 312 Query: 157 TFRSIHCQASSPIRTIDHFD------------------VNSFGNLIEIRVVARSFLHTQI 198 + + R + + +FL Q+ Sbjct: 313 KIDASKQLTNFKRRIFYAGIEEVSPLSVPSYLSHGAIAPPDQPKMYAFVLHGSAFLWHQV 372 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQ---AQDRKECGPLAPPEGLYFDSVEY 246 RS V L L+G + +++ L R + +A L + Sbjct: 373 RSIVAILFLIGQRLEPPSLVQQLLDIETNPTRPK-YEMASDAPLVLWDCIF 422 >gi|259485874|tpe|CBF83268.1| TPA: pseudouridylate synthase 3 (AFU_orthologue; AFUA_3G13350) [Aspergillus nidulans FGSC A4] Length = 664 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 52/357 (14%), Positives = 82/357 (22%), Gaps = 115/357 (32%) Query: 4 YCMIIEYNGSGYFGWQRQKN----GSSIQGSIEKAIFL---------------------- 37 + Y G Y G + N +I+ + KA+ Sbjct: 167 IALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAKRK 226 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHF--------------------------- 64 ++ E AGRTD GV A QV Sbjct: 227 EIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRE 286 Query: 65 -----DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 D + LN L + + + F AR+S R Y Y Sbjct: 287 TVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNP-PEDFDARYSCRERHYKYFFTQP 345 Query: 120 QAPL---------------------------------ALEKGRAWLIPKSLDCENMRIAA 146 E + +D Sbjct: 346 AFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENF 405 Query: 147 QHLVGRHDFTTFRSIHCQASSPIRTIDHF---------------DVNSFGNLIEIRVVAR 191 + ++ R D + R V + + Sbjct: 406 ERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQGS 465 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+R VG L LVG G + + + + L RK +A L + + Sbjct: 466 AFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVF 522 >gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4] gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue; AFUA_2G08460) [Aspergillus nidulans FGSC A4] Length = 574 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLIGYSGTGYKGMQLSTTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E ++ +N +L + + ++ +K F + R Y Sbjct: 139 KGVHAAGNIVSLKLIVEDPDIVQK--INDHLSPQIRVWGILVA--NKSFSSYQMCDSRIY 194 Query: 113 LYRIITRQAPLALEKGR 129 Y I + Sbjct: 195 EYLIPSHCFLPPHPNTY 211 Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 5/110 (4%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 + + + + ++V +SF+ QIR Sbjct: 353 KYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDGTEWLSLKVHGQSFMMHQIRK 412 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 V +V + + K P AP GL + Y+ Sbjct: 413 MVAMATMVVRCGCDPARIND--SYGEFKMAIPKAPGLGLLLERPVFDGYN 460 >gi|320588025|gb|EFX00500.1| tRNA pseudouridine synthase [Grosmannia clavigera kw1407] Length = 899 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 75/248 (30%), Gaps = 30/248 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTD 52 + ++I Y G+GY G Q + +I+G + A + + RTD Sbjct: 417 RKVAVMIGYAGTGYRGMQINHDEKTIEGDLFAAFVAAGAIAKTNADDPKKSSLVRCARTD 476 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +NA+L I + + F + R Y Sbjct: 477 KGVHAAGNVISLKLIVE--DADVVERINAHL--PPQIRVWGIQRTINSFSCYQACDSRWY 532 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + L+P D R D R Sbjct: 533 EYLL-----------PSYALLPPHPDSFLGREMVASARR-ADAAEGAVGGMYDDMVHRLE 580 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV---GDGKWTSTDLEKALQ--AQDR 227 D D S + + R V L G + D+EK ++ A+ Sbjct: 581 DVRDFWSDVERDVVTPILDGLDAEVRRLVVEQLHATDFRTLGHRSLDDIEKTVEEAAKPA 640 Query: 228 KECGPLAP 235 E AP Sbjct: 641 AELTATAP 648 Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD-GKWTSTDLEKALQAQDRKEC 230 + +RV +SF+ QIR V ++ G ++ L R+ Sbjct: 721 NPEPIQMRDTQWLSLRVHGQSFMMHQIRKMVAMAVMLTRCGTAPGPAMK--LSYGPRRIS 778 Query: 231 GPLAPPEGLYFDSVE---YS 247 P AP GL + Y+ Sbjct: 779 IPRAPGFGLLLERPVFDSYN 798 >gi|242223970|ref|XP_002477524.1| predicted protein [Postia placenta Mad-698-R] gi|220722803|gb|EED77277.1| predicted protein [Postia placenta Mad-698-R] Length = 407 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 64/267 (23%), Gaps = 45/267 (16%) Query: 19 QRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Q +I+G + A+ V V + A RTD+GVHA V L+ Sbjct: 1 QPDPKLRTIEGVLFNALVKVGAVSQDNADDPIKVNLGRAARTDAGVHAAGNVVSMKLITA 60 Query: 70 WVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAIRR--------------SYLY 114 V +N L + + R + Sbjct: 61 IPGVGDLISRVNEELPPEIRLWNVLRVQNSFNARTRKYTYFFPSYLMIPPKPGSGLFQIA 120 Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQH--------------LVGRHDFTTFRS 160 + + D + + G H+F F Sbjct: 121 QQNDGNELKHIFWNSPAPEATWQDDLRRKRQYRMPPEQVEALRAASRKFEGSHNFHNFTV 180 Query: 161 -IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL----HTQIRSFVGSLKLVGDGKWTS 215 S +R I ++ V+ F R + +L L Sbjct: 181 GRDFGDRSCMRHIKSVEIADPVVYGGTEWVSVLFHGQSFMLHQRKMMSALVLACRTGSPP 240 Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFD 242 +E+ R P P GL + Sbjct: 241 QTIEEM--YGPRTVFIPKMPALGLLLE 265 >gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata subsp. lyrata] Length = 571 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 11/118 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRTDSG 54 ++ + G GY G Q+ +I+G +E+A+F + RTD G Sbjct: 60 VAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPEADRNKPRNYEWARSARTDKG 119 Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 V A+ QV P + LN+ L + R Y Sbjct: 120 VSAVGQVVSG--RFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKLCDRRRYVY 175 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I+ VV +SF+ QIR +G V + +E A + +D + P+AP GLY Sbjct: 379 DFIKCEVVGQSFMLHQIRKMIGLAVAVMRNYAPESLIETAFK-KDVRINVPMAPEVGLYL 437 Query: 242 DSVEYS 247 D ++ Sbjct: 438 DECFFT 443 >gi|17544142|ref|NP_500962.1| hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] gi|15375270|gb|AAK95894.1|AC084197_22 Hypothetical protein Y73B6BL.29 [Caenorhabditis elegans] Length = 322 Score = 58.7 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 82/299 (27%), Gaps = 54/299 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTG----------EIVVVHGAGR 50 RY I Y+GS + + G + + + I + G + + + R Sbjct: 5 RRYLFWIGYDGSKFPEMAKGGTGFGVMDLLNQTISTSIFGSRCEQTPNCSDRLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH-------- 102 TD+ VHA+R + E+ + S +I + + H Sbjct: 65 TDAKVHAIRNSVICQVPLEYAELDKTPETKKAFMTSWKNTIDVANPGSLEIHDVHSVSAG 124 Query: 103 --ARFSAIRRSYLYRIITRQAPLALEKGRAWL---IPKSLDCENMRIAAQHLVGRHDFTT 157 R S R Y YR+ ++ E R D Sbjct: 125 FCIRRSVSYRKYTYRMAVCRSWELWESIRQEPSISCFSERDYAWRLPPGFSAHKVLQAGK 184 Query: 158 FRSIHCQASSPIRTIDHFDVNSF--------------------------GNLIEIRVVAR 191 S + + + +VA+ Sbjct: 185 LFEGEQVMGSFFKHTAREKRYEPISPTALKYIFHVGLSKGEAYSMENDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRK----ECGPLAPPEGLYFDSVEY 246 SF+ QIR + L + T +E L P+APP+GL+ V Y Sbjct: 245 SFVREQIRRMMSCLVNYSYDRIPLTTIEWLLSNPISSNFFDLGIPVAPPQGLFLTDVVY 303 >gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] Length = 600 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 106 RKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 165 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N +L S I + + + +K F + R Y Sbjct: 166 KGVHAAGNVVSLKLIVEDSNVVQK--INNHL--SPQIRVWGIEVTNKSFSSYQLCDSRVY 221 Query: 113 LYRIITRQAPLALEKGR 129 Y I T Sbjct: 222 EYLIPTHCFLPPHPSTY 238 Score = 43.7 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D ++ + ++ +F + + + + + ++V +SF+ Sbjct: 384 DALDLYVGTRNFHNYTIQKSFCEASAKRHIKSFKISRDPVIINGTEWLSLKVHGQSFMMH 443 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V + +V + + D+K P AP GL + Y+ Sbjct: 444 QIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 495 >gi|19074166|ref|NP_584772.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1] gi|19068808|emb|CAD25276.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1] Length = 345 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDS 53 R +++ Y+GS Y G Q K+ +++ I + + + + + + RTD Sbjct: 4 RVGLLVGYDGSRYHGLQFNKDLDTVEKKIVECLLRMDAISERNAGDPRKIHIKSSSRTDK 63 Query: 54 GVHALRQVAHFDLV 67 GVHA + + Sbjct: 64 GVHAALNLVSVKIE 77 >gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona intestinalis] Length = 510 Score = 58.4 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 88/303 (29%), Gaps = 68/303 (22%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG------SSIQGSIEKAIFLVT---------GEIVVVH 46 R + + Y G Y G+ K+ SI +E+ + G ++ Sbjct: 101 RRIALKVLYLGWDYVGYAFTKSSLAFSKPESISNVVERVLLEALLRQQLITGVGSVLNFD 160 Query: 47 GAGRTDSGVHALRQVAHF----------------------------------------DL 66 AGRTD V L QV D Sbjct: 161 RAGRTDRQVSGLSQVVSVNVRSNLNKGHGVWYPKVEGSDNVGNTKPETEYFEDGFPVSDT 220 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 + + LN L I IL S V K F R+ R+Y Y + + L Sbjct: 221 TLDDGELPYVSLLNQAL--PPDIRILAWSPVKKTFSPRYQCRSRTYRYAFVRGSMDIELM 278 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 A D N +R+ +S + ++ Sbjct: 279 NEAAQKFVGRHDMRN-------FCKVSSENAYRTYVRTINSIKVEEFNQTNLPECDICVA 331 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAP---PEGLYFDS 243 + A S+++ QIR + L +G G+ + +++ L ++ P P L Sbjct: 332 TISAESYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDV-EKNPKKPSFKSWTPLNLTLID 390 Query: 244 VEY 246 E+ Sbjct: 391 AEF 393 >gi|159120024|ref|XP_001710229.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803] gi|157438347|gb|EDO82555.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803] Length = 467 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIFL---VTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G I AI + G + G RT Sbjct: 41 IAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYAAIEAAGILYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F + L +AL +L ISI V +F A+ + R+ Sbjct: 101 DRSVSAAMAVFSFFGP---GHLDLVQALQPHL--PKDISIFGTVRVPPKFSAKMACTSRT 155 Query: 112 YLYRII 117 Y Y + Sbjct: 156 YEYMMP 161 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ + ++FL QIR +G+L V G ++ L A Q + + AP L Sbjct: 311 YTKVTICGQAFLMYQIRRMMGALVAVLRGWIPASFLYFAFQTRTKHLRISTAPGSYLLLK 370 Query: 243 SVEY 246 Y Sbjct: 371 QPNY 374 >gi|156082175|ref|XP_001608576.1| pseudouridylate synthase 1 [Plasmodium vivax SaI-1] gi|148801515|gb|EDL42914.1| pseudouridylate synthase 1, putative [Plasmodium vivax] Length = 587 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 69/224 (30%), Gaps = 21/224 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRT 51 +Y + + Y GS Y G Q Q K+ +I+ IE+ + + + RT Sbjct: 45 KKYALCVGYVGSRYHGCQGQGKDCMTIENEIERTLIKMNAVGGGGRRKNFNFCQSRSART 104 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHAL V + + + A + + V A +S Sbjct: 105 DLGVHALYNVFVYQVDLSCGGAVGGGANGDAEGVVAANADAASREVATNEATTDEAAAQS 164 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 T + E+ + + L E++ + +F + Sbjct: 165 ATTNEATPHSAALAERTKKEKKFRQLLNEHLPEDIRCFDMHRVTKSFDARKF-------- 216 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 + L + V++ + + R G V +G+ Sbjct: 217 ---CSFRLYEYLFPVCVLSEVAVRDEYRDVFGEALQVIEGRVEE 257 >gi|323331140|gb|EGA72558.1| Pus1p [Saccharomyces cerevisiae AWRI796] Length = 465 Score = 58.4 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVTGEIVVVHG---AGRTDSGVHAL 58 + Y G+GY G Q +I+ ++ K AI + +G A RTD GVHA Sbjct: 2 VGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGVHAG 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + ++ E + +N L + I + ++ V+K F R R Y Y + T Sbjct: 62 GNLISLKMIIEDPDIKQK--INEKL--PEGIRVWDIERVNKAFDCRKMCSSRWYEYLLPT 117 Query: 119 R 119 Sbjct: 118 Y 118 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 264 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 321 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 322 LLEAPVFEGYN 332 >gi|221052120|ref|XP_002257636.1| pseudouridylate synthase 1 [Plasmodium knowlesi strain H] gi|193807466|emb|CAQ37972.1| pseudouridylate synthase 1, putative [Plasmodium knowlesi strain H] Length = 524 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGE----------IVVVHGAGR 50 +Y + I Y GS Y G Q Q K+ +I+ IE+ + + G + R Sbjct: 50 KKYALCIGYVGSRYHGCQGQGKDCMTIENEIERTLIKMNGVGRRGGCKKDFNFCQSRSAR 109 Query: 51 TDSGVHALRQVAHFDLVREW 70 TD GVHAL V + + Sbjct: 110 TDLGVHALYNVFVYQVDLNC 129 Score = 35.2 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 1/104 (0%) Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 H FT + N + ++++ +SFL QIR + Sbjct: 379 QNYAGYHNFHCFTKNKVDQTTFRFIKYLDVSTVNLFNYNFVSVKILGQSFLMHQIRKMLT 438 Query: 204 SLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + L++ + L P EGL ++ Sbjct: 439 LSVETFRKATSVNSIYYCLKSGEYVP-ISLFPAEGLMLICPYFN 481 >gi|261332259|emb|CBH15253.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 573 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 52/155 (33%), Gaps = 24/155 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLV------------TGEIVVVHG 47 + +I Y G Y G Q N +++ + +A+ + + Sbjct: 33 RKVAIIFGYIGERYCGLQWNHLPNYPTVEEELLRALRRADMISEENYAQQKVQQKLNWER 92 Query: 48 AGRTDSGVHALRQVAHF--------DLVREWVPVILCKALNAYLKISDTISILNLSIVDK 99 A RTD GVHALR V D E+ + L L I + + V + Sbjct: 93 ASRTDKGVHALRNVFSLNVMLPYAKDSTSEFDVGEARRLLTEAL--PSDIVVYEIIPVTR 150 Query: 100 QFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 F+A R Y Y + T + E + P Sbjct: 151 SFNAYMMCGSRKYEYYLPTFAFMNSEEYSNIYFPP 185 Score = 42.9 bits (99), Expect = 0.034, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + +SFL QIR +G++ + L + + P+ P GL+ Sbjct: 438 RIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANGLFLT 495 >gi|331244832|ref|XP_003335055.1| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314045|gb|EFP90636.1| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 547 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 9/146 (6%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHAL 58 I Y G GY G Q +I+G++ A V + A RTD+ V A Sbjct: 2 IGYYGRGYQGSQINPGTKTIEGTLFNAFVRAGCITQDNSTHPNKVGLQRAARTDANVSAC 61 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + L+ + K ++ + ++ I + + I+ + Sbjct: 62 CNLISLKLILNPPEIGQDKRMDQVEEEGQEDALHRSLIEQHSQTSYYPLIKHINRFLPSD 121 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRI 144 + + ++ D Sbjct: 122 MKIWEIIRVQNSFNPRSFCDSRVYEY 147 Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 N I I +SF+ QIR +G L LV + + +++ RK P AP Sbjct: 289 NPPTEWISITFHGQSFMLHQIRKMIGLLVLVCRTRTPVSIIKQL--YGPRKVSIPKAPGI 346 Query: 238 GLYFDS 243 GL Sbjct: 347 GLILRK 352 >gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 216 Score = 58.0 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 21/229 (9%) Query: 26 SIQGSIEKAIF----LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREW--VPVILCKAL 79 S++ ++ +A+ + + GRTD GV A Q L ++ K L Sbjct: 1 SVEKALFRALRTSRLVESRASSGYSRCGRTDKGVSAAGQQTDPPLRQQRALREHAYDKIL 60 Query: 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDC 139 N L + D ++ Y +R A+ +G + Sbjct: 61 NNLLPDDIRVLGWIPVSDDFSARFSATSRTYRYFFRRRRTLDVEAMRQGLHRMQGTHDFR 120 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 ++ + + I ++ + +V ++FL QIR Sbjct: 121 NFCKMDVEKVYNFERRIDKAEI-------------VNMERDTGVSYFLIVGQAFLWHQIR 167 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 L +G G T + L K PLA + L Y Sbjct: 168 YMASILFAIGQGLETPELVTAMLDIAQNPGKPAYPLADEQPLVLHDCGY 216 >gi|213401667|ref|XP_002171606.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] gi|211999653|gb|EEB05313.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275] Length = 453 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGS---IEKAIFLVTGEI---VVVHGAGRTDSGV 55 +R +++ Y+G+ Y G Q ++I+ + +A+ L+ + + A RTD GV Sbjct: 41 VRIAVLLGYSGTKYHGIQLNNPHATIERVVLDVFQALGLIRDTDADHISLSRAARTDKGV 100 Query: 56 HALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYR 115 HAL V F LV + A K+ + I + ++ V F+ R R Y Y Sbjct: 101 HALGNVVSF-LVSNFTFTGKELATRLNEKLPEDIRVWDVLKVPMSFNPRLCCDSRLYEYY 159 Query: 116 II 117 + Sbjct: 160 LP 161 >gi|312217345|emb|CBX97293.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans] Length = 615 Score = 57.6 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y+G+GY G Q +I+G + AI + + RTD Sbjct: 108 RKVAVMIGYSGTGYKGMQIDYKQKTIEGDLFNAFVAAGAISKANATDHKKSSLVRCARTD 167 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N L + + ++ + + Y Sbjct: 168 KGVHAAGNVVSLKLIIE--DEDIVQKINDNLSDQIRVWGIQRTVGSFSCYQACDSRWYEY 225 Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%) Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFD------VNSFGNLIEIRVVARSFLHTQIR 199 +L S R I F + + + ++V +SF+ QIR Sbjct: 409 NNYLGTHKYHNYTVQKKFSDKSAQRYIKSFKVAPKPIIINDTEWLSLKVHGQSFMMHQIR 468 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 VG L ++++ + P AP GL + Y+ Sbjct: 469 KMVGMAALSVRCGTDPKIIQESF--GNTVVRIPKAPGLGLLLERPVFDSYN 517 >gi|296812761|ref|XP_002846718.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480] gi|238841974|gb|EEQ31636.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480] Length = 576 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 14/174 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIE------KAIFL---VTGEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI + + RTD Sbjct: 99 KKVIVMLGYSGTGYHGMQLCATEKTIEGDLFAAFVAANAISKANAMDPKKSSFVRCARTD 158 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + + + + Y Sbjct: 159 KGVHAAGNVVSLKLIIEDPDIVQK--INEKLNPQIRVWGIIPATKGFSAYQFCDSRMYEY 216 Query: 113 L---YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHC 163 L + + L + + K D E + + + T + I Sbjct: 217 LIPSHCFLPPHPSTFLAQKMVEMAEKHGDMEAFKQRQAEVETYWEETDKKHIQP 270 Score = 36.0 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV--- 244 V +SF+ QIR V + L+ +E++ Q + P AP GL + Sbjct: 416 VHGQSFMMHQIRKMVAMVALLVRCGADIHRIEESYQRP--RIPIPKAPGLGLLLERPIFD 473 Query: 245 EYS 247 Y+ Sbjct: 474 GYN 476 >gi|149236317|ref|XP_001524036.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146452412|gb|EDK46668.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 445 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 15/123 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ + A+ + + RTD GVH Sbjct: 2 LGYCGTGYNGLQIQNDPNVKTIERDLYTALHKAGAISLENSLDLKKSGFQRCARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V ++ E + + +N +L I I + K F R R Y Y + Sbjct: 62 AAGNVVSLKMIIEDP--EIKEKINEHL--PQQIRIWGIQRTTKGFDCRKMCSSRVYEYLL 117 Query: 117 ITR 119 T Sbjct: 118 PTY 120 Score = 38.3 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + +++ +SF+ QIR + L K + L + K P AP G Sbjct: 287 HATEWVSVKIHGQSFMLHQIRKMICMAALTVRCKLPAEKLLAMCF-KPEKLNIPKAPALG 345 Query: 239 LYFDSVE---YS 247 L ++ Y+ Sbjct: 346 LLLENPVFDAYN 357 >gi|156095520|ref|XP_001613795.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148802669|gb|EDL44068.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 545 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 6/115 (5%) Query: 136 SLDCENMRIAAQHLVGRHDFTTFR------SIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 D E ++ + +GRH F FR Q + N+ + + Sbjct: 414 PCDVEKIKECCKLFLGRHSFELFRGTLKGTEKQKQVNPFCNISFLELHQLRSNIYQFVIQ 473 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR VG+L VG G + D+ AL + AP +GL + Sbjct: 474 GDRFLYHMIRIIVGTLVQVGVGLLSYEDVRDALHFSKPLKVKLCAPAQGLCLTKI 528 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 56/178 (31%), Gaps = 48/178 (26%) Query: 2 IRYCMIIEYNGSGYFGWQ----------------------RQKNG----SSIQGSIEKAI 35 +I++Y+G+ Y GW ++ G S+Q I + Sbjct: 108 TNLLLIVDYDGTNYSGWTGVENCSDIYLSATRNYKRAATEKKPKGESKCDSVQNVILNCL 167 Query: 36 FLVTG----------------EIVVVHGAGRTDSGVHALRQVAHF-----DLVREWVPVI 74 + G + G RTD GVHA V + E Sbjct: 168 LKIHGYADQWDKHANDVKSNLKAFEFIGVSRTDKGVHAKEYVCQYVSYERPPPCEGNLQK 227 Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWL 132 + ALN L I + + F+ RF+ + Y Y TR LE+ AW Sbjct: 228 VKMALNGLLNRDIRILGVLNAP-SHDFNVRFNNWGKIYTYNFDTRIPSQPLERNYAWQ 284 >gi|70952835|ref|XP_745558.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525920|emb|CAH80907.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 507 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 61/178 (34%), Gaps = 15/178 (8%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD Sbjct: 58 KKYGLCVGYIGSRYHGCQGQGKEHMTIENEIERTLTKINAVKNNSKGFNYCLSRSARTDL 117 Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAY-------LKISDTISILNLSIVDKQFHARFS 106 GVHAL + +++ + L + T S ++ H++ Sbjct: 118 GVHALYNLFVYNINIDVCEGENGNENGNDNSKPENGLVNNQTNSPKCDENNEENSHSQNV 177 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + + L ++ E+ R +L N+ + +F + Sbjct: 178 SENNNPLNTNNDKKNNTFEERKRKEKKFINLLNSNLPNDIKCFDIYKVTKSFDARKFC 235 Score = 39.5 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 47/207 (22%), Gaps = 1/207 (0%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 E + D V ++ E N + Sbjct: 259 EKIFEECVKHIDEYVENHKEAKKKKKETEKEKRKQHDEENDNKIDKPDEENDTKIDKPDE 318 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 + + + E+ + + + + H FT Sbjct: 319 ENKVEPKKASGKAWGLEAEDIFTIKEEKSDLTDDELNNLFEIFSNYRGYHNFHCFTKNNI 378 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 N I IR++ +SFL QIR + + Sbjct: 379 DTTTFRYIKYFDVSTVKLYDHNFISIRILGQSFLMHQIRKMITLAVETFRNATPKNSIYY 438 Query: 221 ALQAQDRKECGPLAPPEGLYFDSVEYS 247 +L + L PP+GL ++ Sbjct: 439 SLNTKSYIP-ILLFPPDGLMLVCPYFN 464 >gi|82595787|ref|XP_725993.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23481212|gb|EAA17558.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 1510 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD Sbjct: 1068 KKYGLCVGYIGSRYHGCQGQGKEYMTIENEIERTLTKINAVKKTSKGFNYCLSRSARTDL 1127 Query: 54 GVHALRQVAHFDLVREWVPVILCK 77 GVHAL + +++ + K Sbjct: 1128 GVHALYNLFVYNINIDICENDNNK 1151 Score = 39.5 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 4/105 (3%) Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN---SFGNLIEIRVVARSFLHTQIRSFV 202 + G H+F F + ++ N I IR++ +SFL QIR + Sbjct: 1364 FSNYRGYHNFHCFTKNNIDTTTYRYIKYFDISTVKLYDHNFISIRILGQSFLMHQIRKMI 1423 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + + +L ++ L PP+GL ++ Sbjct: 1424 TLTVEIFRNATSKNSIYYSLNTKNYIP-ILLFPPDGLMLICPYFN 1467 >gi|212723684|ref|NP_001131790.1| hypothetical protein LOC100193161 [Zea mays] gi|194692542|gb|ACF80355.1| unknown [Zea mays] gi|223946927|gb|ACN27547.1| unknown [Zea mays] Length = 173 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL 233 + D ++ + +VA FL +R V + + L ++A DR+ P Sbjct: 89 NEDHKGGMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPP 148 Query: 234 APPEGLYFDSVEY 246 APPEGL V Y Sbjct: 149 APPEGLCLVDVGY 161 >gi|296004937|ref|XP_002808812.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7] gi|225632204|emb|CAX64089.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7] Length = 556 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 11/231 (4%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT---------GEIVVVHGAGRT 51 +Y + I Y GS Y G Q Q +N +I+ ++E+ + + + + RT Sbjct: 51 KKYALCIGYIGSQYHGCQGQGENCETIENTLERTLLKINAIKKKKFFKNFNFCLSRSART 110 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHAL + +++ + + ++ + S+ + D + Sbjct: 111 DQGVHALFNIFVYNVDIN-CTNMKNEEVHKTVNNSNDDHKTVNNNNDDHKTVNNNNDDHK 169 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRT 171 + + + +N + + + + + Sbjct: 170 TVTNNNNDHKTVNNNNNDENFCGMMENQKNDQEKNYEELFKERKEKEEKFKNLLNDHLPC 229 Query: 172 IDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 SF + V L V + +A+ Sbjct: 230 DIKCFKIYKVTKSFDARKFCSFRFYEYLFPVYVLSEVQVNEKYKETFHQAI 280 >gi|322502433|emb|CBZ37516.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 701 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +S +R ++ I + +SF+ QIR +G++ + G Sbjct: 534 KRQIPKSADAALRERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGL 593 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + L + + P+AP GL+ Sbjct: 594 PDSYIRDVLLRKGVRRGIPMAPANGLFL 621 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 14/95 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL--------VTGEIV----VVHG 47 + +I Y G Y G Q +++ ++ KA+F + V Sbjct: 56 QKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFER 115 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 A RTD GVHALR V ++ + P K + A Sbjct: 116 ASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAAL 150 >gi|146098588|ref|XP_001468420.1| hypothetical protein [Leishmania infantum] gi|134072788|emb|CAM71504.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 701 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 33/88 (37%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +S +R ++ I + +SF+ QIR +G++ + G Sbjct: 534 KRQIPKSADAALRERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGL 593 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + L + + P+AP GL+ Sbjct: 594 PDSYIRDVLLRKGVRRGIPMAPANGLFL 621 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 14/95 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL--------VTGEIV----VVHG 47 + +I Y G Y G Q +++ ++ KA+F + V Sbjct: 56 QKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFER 115 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 A RTD GVHALR V ++ + P K + A Sbjct: 116 ASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAAL 150 >gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502] gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis] Length = 210 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 9/178 (5%) Query: 76 CKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPK 135 + LN L I ++ V F ARF R Y Y + K + Sbjct: 1 MEMLNGVL--PWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLNHERTKISKFPKIPPEQ 58 Query: 136 SLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS---FGNLIEIRVVARS 192 + F + + + IRTI FD+N + + Sbjct: 59 VPLMDIAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDINFVDENRTFAVATIKGSA 118 Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP----LAPPEGLYFDSVEY 246 FL Q+R +G L +G K+ + + L ++K +A GL + Sbjct: 119 FLWHQVRLMMGILFEIGQQKFNPEVITQMLTDVEQKNIAELSFQMATELGLVLWDCVF 176 >gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18] Length = 597 Score = 57.2 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 134 RKVAVLLGYSGSGYHGMQLSQTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 193 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N +L + + ++ A Sbjct: 194 KGVHAAGNVVSLKLIVEDSDVVQK--INNHLSPQIRVWGIEVTNKSYNQRQAEVATYWEK 251 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D ++ + ++ +FR + + + + + ++V +SF+ Sbjct: 366 DALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISRDPIIINGTEWLSLKVHGQSFMMH 425 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V + +V + + D+K P AP GL + Y+ Sbjct: 426 QIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 477 >gi|148683103|gb|EDL15050.1| mCG23338, isoform CRA_a [Mus musculus] Length = 130 Score = 56.8 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGL 239 + ++SFL+ Q+R L VG G T ++ L++QD K +AP GL Sbjct: 57 QFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARGL 116 Query: 240 YFDSVEY 246 + SV Y Sbjct: 117 FLKSVLY 123 >gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 330 Score = 56.8 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|115750989|ref|XP_001203430.1| PREDICTED: similar to FKSG32, partial [Strongylocentrotus purpuratus] gi|115923548|ref|XP_794710.2| PREDICTED: similar to FKSG32, partial [Strongylocentrotus purpuratus] Length = 224 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ ++++ + +A+ + + GRTD GV A Sbjct: 65 VALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKLIESRQTSNYSRCGRTDKGVSAF 124 Query: 59 RQVAHFDLVRE 69 QV DL Sbjct: 125 GQVIAIDLRTN 135 >gi|74227733|dbj|BAE35706.1| unnamed protein product [Mus musculus] Length = 219 Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 24/197 (12%) Query: 53 SGVHALRQVAHFDLVREWVPVILC-----KALNAYLKISDTISILNLSIVDKQFHARFSA 107 G+HAL AH D+ R KALN +LK +L V FHAR +A Sbjct: 2 PGLHALSNAAHLDIQRRPGQSPFSPEVVAKALNTHLKHPAI-RVLKAFRVPNDFHARHAA 60 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPK-----SLDCENMRIAAQHLVGRHDFTTFRSIH 162 R+Y YR+ T + + LD M+ AAQHL+G HDF+ F+S Sbjct: 61 TSRTYQYRLATGCSWPNQLPVFEQNVCWALQTEYLDMAAMQEAAQHLLGTHDFSAFQSAG 120 Query: 163 CQASSPIRTIDH-------------FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 ++ +RT+ + + + ++SFL+ Q+R L VG Sbjct: 121 SPVTNTVRTLRRVSVSPGPASPFVLPEGSRRLQFWTLEFESQSFLYRQVRRMTAVLVAVG 180 Query: 210 DGKWTSTDLEKALQAQD 226 G T ++ L++QD Sbjct: 181 LGILAPTQVKVILESQD 197 >gi|325182027|emb|CCA16480.1| tRNA pseudouridine synthase A putative [Albugo laibachii Nc14] Length = 209 Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + + + I I +VA FL +R VGSL+L+G+G ++ + L++Q E GP Sbjct: 130 CDMEGKTLTHFICIELVANGFLRHMVRRIVGSLRLIGEGSQHPQEMHRILKSQ--VEAGP 187 Query: 233 LAPPEGLYFDSVEYS 247 AP +GL+ + ++ Sbjct: 188 SAPAKGLWLQQIWFT 202 >gi|171741245|ref|ZP_02917052.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] gi|171276859|gb|EDT44520.1| hypothetical protein BIFDEN_00320 [Bifidobacterium dentium ATCC 27678] Length = 219 Score = 56.4 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 2/94 (2%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + + L +VA +F +RS V VG GK Sbjct: 108 YWRRIPQRPLVDGEMTMGERYRTPSMESGLACFTIVADAFARNMVRSLVNGCVQVGIGKR 167 Query: 214 TSTDLEKALQAQDRKEC-GPLAPPEGLYFDSVEY 246 + + R+ GP+AP +GL + +EY Sbjct: 168 SLDWFADKMATPLREGSTGPIAP-QGLTLEHIEY 200 >gi|308161589|gb|EFO64028.1| Pseudouridylate synthase 1 [Giardia lamblia P15] Length = 467 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIF---LVTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G I AI L+ G + G RT Sbjct: 41 IAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYTAIEAAGLLYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F + L + L +L ISI V +F A+ + R+ Sbjct: 101 DKSVSAAMAVFSFFGP---GHLDLVQLLQPHL--PKDISIFGTVRVPPKFSAKMACTSRT 155 Query: 112 YLYRII 117 Y Y + Sbjct: 156 YEYMMP 161 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 +I + ++FL QIR +G+L + G + L A Q + + AP L Sbjct: 311 YTKITICGQAFLMYQIRRMMGALVAILRGWIPVSFLYFAFQTRTKHLRISTAPSPYLLLK 370 Query: 243 SVEY 246 Y Sbjct: 371 QPNY 374 >gi|170291222|ref|YP_001738038.1| tRNA pseudouridine synthase [Candidatus Korarchaeum cryptofilum OPF8] gi|170175302|gb|ACB08355.1| tRNA pseudouridine synthase [Candidatus Korarchaeum cryptofilum OPF8] Length = 232 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 60/238 (25%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + I Y G Y G Q + ++ ++ +A+ G + RTD GV AL +A + Sbjct: 8 LRIAYLGWNYHGVVEQPSLPTVGSALREAMES-QGIRAKLRFTSRTDRGVSALDNIAFYR 66 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 V + LN+ L + + + K + A + +R+ Sbjct: 67 GPAPNVSL-----LNSELPKDIAVWAIATGGIPK---PKARAYCYAIPFRL--------- 109 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + + + I+ DV S N Sbjct: 110 -------------------------SETECVRRALDELAQAGLGKNIERIDVKSGENFTY 144 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I + +SF +IR VG + G+ LAPPEGL Sbjct: 145 IEIYGKSFKKNEIRRIVGRALELHLGR-----------------SIGLAPPEGLVLTE 185 >gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357] Length = 601 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI + + RTD Sbjct: 117 KKVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTD 176 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +NA+L + + ++ + + Y Sbjct: 177 KGVHAAGNVVSLKLIVE--DEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCDSRIYEY 234 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 2/107 (1%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 + + + + + + ++V +SF+ QIR Sbjct: 381 KYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIINGTEWLSLKVHGQSFMMHQIRK 440 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V L+ + K P AP GL + ++ Sbjct: 441 MVAMATLIVRCGCDPKRIVD--SYGPTKIPIPKAPGLGLLLERPIFN 485 >gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40] gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae] Length = 563 Score = 56.4 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 11/120 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLLGYSGTGYKGMQLSATEKTIEGDLFAAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +NA+L + + ++ + + Y Sbjct: 139 KGVHAAGNVVSLKLIVE--DEDIVQKINAHLSPQIRVWGILVASKSFSSYQMCDSRIYEY 196 Score = 41.8 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 2/107 (1%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 + + + + + + ++V +SF+ QIR Sbjct: 343 KYLGTKNFYNYTIQKLYKDPSAKRHIKSFKVDPNPIIINGTEWLSLKVHGQSFMMHQIRK 402 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 V L+ + K P AP GL + ++ Sbjct: 403 MVAMATLIVRCGCDPKRIVD--SYGPTKIPIPKAPGLGLLLERPIFN 447 >gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13] Length = 406 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 48.7 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|2160170|gb|AAB60733.1| F21M12.19 gene product [Arabidopsis thaliana] Length = 250 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 31/121 (25%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQV 61 RY + IEY G+ + G Q+Q ++ G ++ A GVHAL V Sbjct: 55 QRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQDA-------------------GVHALSNV 95 Query: 62 AHFDLV-----------REWVPVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIR 109 H D+ P ++ +A+N +L+ D + ++++ V +HAR+ A Sbjct: 96 CHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQE 155 Query: 110 R 110 R Sbjct: 156 R 156 >gi|414485|gb|AAD12372.1| Homology to pseudouridine synthetase X02743 [Mycoplasma genitalium] Length = 116 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 L+ + FL +Q+R V L + K + K + + C AP GLY Sbjct: 49 NQLVRLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLY 108 Query: 241 FDSVEY 246 +V Y Sbjct: 109 LKTVVY 114 >gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 1199 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 13/137 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q +I+G + AI + + RTD Sbjct: 79 KKVAVLLGYSGTGYKGMQLSDTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCARTD 138 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E ++ +N L + + ++ +K F A R Y Sbjct: 139 KGVHAAGNVVSLKLIVEDPDIVQK--INEKLSPQIRVWDILVA--NKSFSAYQMCDSRIY 194 Query: 113 LYRIITRQAPLALEKGR 129 Y I T Sbjct: 195 EYLIPTYCFLPPHPSTY 211 Score = 42.2 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V LV +E A K P AP GL + Sbjct: 398 VHGQSFMMHQIRKMVAMATLVVRCGCDPKRIEDA--YGPTKIAIPKAPGLGLLLERPVFE 455 Query: 246 -YS 247 Y+ Sbjct: 456 SYN 458 >gi|83305357|sp|P53167|PUS2_YEAST RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA pseudouridylate synthase 2; AltName: Full=tRNA-uridine isomerase 2 gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae] Length = 370 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|254168636|ref|ZP_04875479.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] gi|197622470|gb|EDY35042.1| tRNA pseudouridine synthase family [Aciduliprofundum boonei T469] Length = 225 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 81/214 (37%), Gaps = 35/214 (16%) Query: 33 KAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISIL 92 KA+ + + + A RTD GV AL V + + L LNA LK S Sbjct: 2 KALESMGIKNLK--SASRTDRGVSALGNV--IWIKTDIDGKELIGRLNANLKHIYFHSFA 57 Query: 93 NLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 NL I + R+ R L+ D + ++ AA G Sbjct: 58 NLDINPRYARIRW----------------------YRYHLLDMGQDMDRLKEAAMIFQGE 95 Query: 153 HDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 HDF F + I+ DVN G++I I R++L IR V +++ GK Sbjct: 96 HDFRNFTRVRKNTVIEIK---KIDVNKRGSIITIDFYGRNYLWNLIRRIVAAMEAYSLGK 152 Query: 213 WTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 ++ RK G +APPE L ++Y Sbjct: 153 EFGQEIFTI-----RKNFG-IAPPEPLILMDIQY 180 >gi|317137489|ref|XP_003190065.1| pseudouridylate synthase 3 [Aspergillus oryzae RIB40] Length = 617 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 72/367 (19%), Positives = 97/367 (26%), Gaps = 126/367 (34%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHG-------- 47 + Y G Y G NG +I+ + KA+ + E G Sbjct: 111 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPR 169 Query: 48 ----------------AGRTDSGVHALRQVAHF--------------------------- 64 AGRTD GV A QV Sbjct: 170 ELKPYLINWEGYQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTGE 229 Query: 65 ------DLVREWVPVILCKA-----LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 D ++ I + LN L + + F ARFS R Y Sbjct: 230 EASALDDTAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHP-PEGFDARFSCRERHYK 288 Query: 114 YRI-------------ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 Y T +A RA LD E MR AA++ G HDF F Sbjct: 289 YFFTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCK 348 Query: 161 IH--CQASSPIRTIDHFD-------------------------------------VNSFG 181 + Q + R I H D + Sbjct: 349 LDTSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPS 408 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGL 239 + + +FL Q+R VG L LVG G T + L RK +A L Sbjct: 409 QVYVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPL 468 Query: 240 YFDSVEY 246 + + Sbjct: 469 VLWNCVF 475 >gi|303389002|ref|XP_003072734.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506] gi|303301876|gb|ADM11374.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506] Length = 345 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 2 IRYC--MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGR 50 ++ +++ Y+GS Y G Q K +++ I + + + V + + R Sbjct: 1 MKVRAGLLVGYDGSKYHGLQFNKELDTVEKEIIGCLLEMEVISQRNADDPKKVHIKSSSR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA + + + P ++ L L + + ++ + K A+ R Sbjct: 61 TDKGVHAALNLVSVKIEADITPELIS-GLRTLLSRKEI-HLYDIIRLTKSTIPSKQAVFR 118 Query: 111 SYLYRIITRQ 120 +Y Y + T Sbjct: 119 AYEYIVPTFF 128 >gi|296775668|gb|ADH42945.1| hypothetical protein [uncultured SAR11 cluster alpha proteobacterium H17925_23J24] Length = 52 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 VGSLK +G+GKW +D +KA ++ R C P AP GL F + Sbjct: 1 MVGSLKYLGEGKWKLSDFKKAFSSKKRTMCAPPAPAYGLLFRECK 45 >gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB] Length = 370 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|330443553|ref|NP_011452.2| Pus2p [Saccharomyces cerevisiae S288c] gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae] gi|329138894|tpg|DAA08039.2| TPA: Pus2p [Saccharomyces cerevisiae S288c] Length = 370 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789] gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a] gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291] gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118] gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796] gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23] gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3] Length = 370 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 12/116 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVH 56 M++ Y GSGY+G Q +I+G I +F + + A RTD GVH Sbjct: 1 MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGVH 60 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 A+ + + V LNA L + + + + Y Sbjct: 61 AMLNLLSLKITLREDTVAK---LNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I +R+ +SF+ QIR V L + + A RK P AP +GL + Sbjct: 246 WICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKY-IPRAPAQGLLLE 304 Query: 243 SV---EYS 247 Y+ Sbjct: 305 GPVFDGYN 312 >gi|71021049|ref|XP_760755.1| hypothetical protein UM04608.1 [Ustilago maydis 521] gi|46100185|gb|EAK85418.1| hypothetical protein UM04608.1 [Ustilago maydis 521] Length = 913 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 63/220 (28%), Gaps = 15/220 (6%) Query: 2 IRYCMIIEYNGSGYFGWQRQK--------NGSSIQGSIEKAI--FLVTGEIVVVHG---- 47 + + Y+G+GY G Q + +++G + A+ + + + G Sbjct: 129 RKIALRFSYDGAGYSGLAAQNTTVPGSGSSLPTVEGVLWDALCTARLVDPALGMDGAGFS 188 Query: 48 -AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFS 106 GRTD GV A QV + + + + + S+L+ + + Sbjct: 189 RCGRTDRGVSAAGQVVALWVRSKKLNQWPDRLEHQEQFSPLASSLLSKPSPQEWDDLQEK 248 Query: 107 AIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQAS 166 + + Q + + S N + + + Sbjct: 249 RNAKLEGTELPYVQILNRILPSSIRIQAWSPVRSNFSSRFDCVYRHYKYFFPAGPPRLFY 308 Query: 167 SPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLK 206 +TI+ D +F A +R L Sbjct: 309 PRSKTINGEDGVAFSVGGGQDAGATRLDIALMRDAARRLL 348 >gi|145609509|ref|XP_367752.2| hypothetical protein MGG_07663 [Magnaporthe oryzae 70-15] gi|145016878|gb|EDK01308.1| hypothetical protein MGG_07663 [Magnaporthe oryzae 70-15] Length = 720 Score = 55.7 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + ++I Y G+GY G Q +I+G + + AI + V + RTD Sbjct: 112 KKVAVLIGYAGTGYKGMQINHFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCARTD 171 Query: 53 SGVHALRQVAHFDL 66 GVHA V L Sbjct: 172 KGVHAASNVISLKL 185 Score = 42.9 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 3/102 (2%) Query: 146 AQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 + F + + + ++V +SF+ QIR V Sbjct: 516 THNFHNYTILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKVHGQSFMMHQIRKMVAM 575 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 L + ++ +A+ + P AP GL + + Sbjct: 576 AVLTVRCGVPLDRITQSYEAK--RISIPKAPGLGLLLERPVF 615 >gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188] Length = 610 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVE--DSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 237 EYLIPTHCFLPPH 249 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 24/243 (9%) Query: 19 QRQKNGSS---------IQGSIEKAIFLVTGEIVVVHGAGRTDSG-VHALRQVAHFDLVR 68 QRQ ++ IQ +E+ + VT V ++D+G V + D Sbjct: 273 QRQAEVATYWKEVDEKYIQPILER-LPEVTRNRVKRALIVKSDTGPVDSS------DSQG 325 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E + +A +I + + + R A A Sbjct: 326 EQKLNPSNEGDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 385 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGNLIEIR 187 + + + D M + ++ +FR + + + + + ++ Sbjct: 386 KERMDRIN-DALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLK 444 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V + LV + + + D K P AP GL + Sbjct: 445 VHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGLGLLLERPIFD 502 Query: 246 -YS 247 Y+ Sbjct: 503 SYN 505 >gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3] Length = 596 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E + + +N L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVE--DSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIITRQAPLAL 125 Y I T Sbjct: 237 EYLIPTHCFLPPH 249 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 24/243 (9%) Query: 19 QRQKNGSS---------IQGSIEKAIFLVTGEIVVVHGAGRTDSG-VHALRQVAHFDLVR 68 QRQ ++ IQ +E+ + VT V ++D+G V + D Sbjct: 273 QRQAEVATYWKEVDEKYIQPILER-LPEVTRNRVKRALIVKSDTGPVDSS------DSQG 325 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E + +A +I + + + R A A Sbjct: 326 EQKLNPSNEGDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 385 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGNLIEIR 187 + + + D M + ++ +FR + + + + + ++ Sbjct: 386 KERMDRIN-DALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLK 444 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V + LV + + + D K P AP GL + Sbjct: 445 VHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGLGLLLERPIFD 502 Query: 246 -YS 247 Y+ Sbjct: 503 SYN 505 >gi|253744083|gb|EET00338.1| Pseudouridylate synthase 1 [Giardia intestinalis ATCC 50581] Length = 465 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 4 YCMIIEYNGSGYFGWQRQ------KNGSSIQGSIEKAIF---LVTGEIVVVHG---AGRT 51 + + Y G+ Y G Q Q + +++G + AI L+ G + G RT Sbjct: 41 IAIALGYVGTRYSGSQWQAPSVTHPHICTVEGEVYAAIEAAGLLYGRDIKSIGWTRCSRT 100 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D V A V F V AL +L ISI V +F+A+ + R+ Sbjct: 101 DKSVSAAMAVFSFFAPINLDLVQ---ALQPHL--PKDISIFGTVRVPPKFNAKMACTSRT 155 Query: 112 YLYRII 117 Y Y + Sbjct: 156 YEYIMP 161 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 I + ++FL QIR +G+L + G T L A Q + + AP L Sbjct: 312 ITICGQAFLMYQIRRMMGALVAIVRGWIPVTFLYFAFQTRTKHLRMSTAPGHYLLLKQPN 371 Query: 246 Y 246 Y Sbjct: 372 Y 372 >gi|157875459|ref|XP_001686121.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129195|emb|CAJ07732.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 701 Score = 55.3 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 +S +R ++ I + +SF+ QIR +G++ + Sbjct: 531 EHGKLQIPKSADAALRERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAA 590 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + L + + P+AP GL+ Sbjct: 591 AGLPGSYIRDVLLRKGVRRGIPMAPANGLFL 621 Score = 44.1 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 14/91 (15%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL--------VTGEIV----VVHG 47 + +I Y G Y G Q +++ ++ KA+F + V Sbjct: 56 QKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFSNVKVQQLLNFER 115 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKA 78 A RTD GVHALR V ++ + P K Sbjct: 116 ASRTDKGVHALRNVVSVAVMLPYDPSYTKKR 146 >gi|222630952|gb|EEE63084.1| hypothetical protein OsJ_17892 [Oryza sativa Japonica Group] Length = 126 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 202 VGSLKLVGDGKWTSTDLEKALQAQDRKECGPLA---PPEGLYFDSVEY 246 V L VG + K + A+DRKE +A PP GLY SV Y Sbjct: 49 VALLLQVGREALPPDIVAKIIAARDRKELAKVALSAPPHGLYLMSVNY 96 >gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS 6054] gi|149386270|gb|ABN66031.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 476 Score = 55.3 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 15/129 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIF---------LVTGEIVVVHGAGR 50 + ++I Y G+GY G Q Q +I+ + +A + + A R Sbjct: 80 RKVAVMIGYCGTGYNGMQLQNDPKIPTIERDLYEAFAAAGAVSPENAMDIKKSGFMRAAR 139 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 TD GVHA V L+ E ++ +N L D I I + V K F R R Sbjct: 140 TDKGVHAAGNVISLKLIIEDPEILAK--INEKL--PDQIRIWGIQRVTKSFDCRKMCSSR 195 Query: 111 SYLYRIITR 119 Y Y + T Sbjct: 196 VYEYLLPTY 204 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 2/107 (1%) Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 + F+ + T+ + + I++ +SF+ QIR Sbjct: 316 MKQYEGTHNFHNFTIGKAFKDPSSKRFMKETTVSDPFIIEGTEWVSIKIHGQSFMLHQIR 375 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + LV + + + K P AP GL ++ Y Sbjct: 376 KMIAMAVLVIRTGCPISRIHDCFSST--KINIPKAPALGLLLENPVY 420 >gi|322499857|emb|CBZ34930.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 696 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQL--PSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 40.6 bits (93), Expect = 0.17, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GS+ V G + LE A + +R+ PLAP LY Sbjct: 364 PFLFFQIEGCSFLLNMIRKIIGSVLAVCRGARE-SILEDAF-SPERRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|194696534|gb|ACF82351.1| unknown [Zea mays] Length = 257 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 51/169 (30%), Gaps = 13/169 (7%) Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 K LN L I +L V FHARF+ + R Y Y + + A Sbjct: 10 YVKVLNRIL--PRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASKFI 67 Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 D N ++ L + + +FL Sbjct: 68 GEHDFRN-------FCKMDAANVSNYRRHITEFT--ISACDRRSNNDELCSMTIKGSAFL 118 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYF 241 Q+R V L L+G G + + ++ L RK +AP L Sbjct: 119 WHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLIL 167 >gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum] gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5] Length = 696 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEEMGQAEGICEKLNRQL--PSTVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 40.6 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GS+ V G + LE A + +R+ PLAP LY Sbjct: 364 PFLFFQIEGCSFLLNMIRKIIGSVLAVCRGARE-SILEDAF-SPERRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger] Length = 567 Score = 54.9 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 13/164 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q + +I+G + AI + + RTD Sbjct: 119 KKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCARTD 178 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E + + +N L + + ++ + + Y Sbjct: 179 KGVHAAGNIVSLKLIVE--DDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLCDSRIYEY 236 Query: 113 --LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 + + L K K D E + + + + Sbjct: 237 LITHCFLPPHPSTYLGKKLFEYAEKEGDLEGYKARQEEVASYWE 280 Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 5/110 (4%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 T + + + + + + ++V +SF+ QIR Sbjct: 350 KYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSFMMHQIRK 409 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 V +V + + A K P AP GL + Y+ Sbjct: 410 MVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYN 457 >gi|156097182|ref|XP_001614624.1| tRNA pseudouridine synthase [Plasmodium vivax SaI-1] gi|148803498|gb|EDL44897.1| tRNA pseudouridine synthase, putative [Plasmodium vivax] Length = 241 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 115 RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + + K+ + E M+ + +G HDF+ F ++ RTI Sbjct: 45 NFFDARLNCIHRTYLYFFMDKNYNFERMKEGCKLFLGEHDFSNFCKKRKNSTCFRRTILK 104 Query: 175 FD-VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA-QDRKECGP 232 F+ ++ SFL+ QIR V +L +G G DL L R + Sbjct: 105 FEVRRMDKKFHYFKIKGTSFLYNQIRHMVAALFQLGTGNLEVEDLANMLNNHPCRDKNFK 164 Query: 233 LAPPEGLYFD 242 +A +GL Sbjct: 165 IADEDGLLLY 174 >gi|70999131|ref|XP_754287.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293] gi|66851924|gb|EAL92249.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293] Length = 610 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 58/358 (16%), Positives = 83/358 (23%), Gaps = 121/358 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVA--------------------------HFDLV 67 ++ E AGRTD GV A QV H D Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGHADDT 234 Query: 68 REWVPVILCKA--LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-------- 117 + + + LN L I + F ARFS R Y Y Sbjct: 235 WDDIADEIPYISILNRVLPDDIRILAWCPNPPP-GFDARFSCRERQYKYFFTQPAFSPTP 293 Query: 118 ----------------------------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 R+A E + LD + + Sbjct: 294 GPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDH---------------FDVNSFGNLIEIRVVARSFL 194 + D + F + + + +FL Sbjct: 354 IYHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFL 413 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEY 246 Q+R V L LVG G T + L + C P AP L + Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIF 467 >gi|157870999|ref|XP_001684049.1| pseudouridylate synthase-like protein [Leishmania major] gi|68127117|emb|CAJ04679.1| pseudouridylate synthase-like protein [Leishmania major strain Friedlin] Length = 696 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQVHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFEKMGQAEGICEKLNRQL--PATVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 36.8 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GS+ V G + LE A + + + PLAP LY Sbjct: 364 PFLFFQIEGCSFLLNMIRKIIGSVLAVCRGARE-SILEDAF-SPECRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens] Length = 239 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 31/234 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGE---------IVVVHGAG 49 + +++ Y G+ Y+G Q+Q + +I+ ++++A+ + A Sbjct: 6 RKLALLLGYRGANYYGLQKQSKESDLPTIELALQEALNRAGAVHEGNQGDLSKIGWSRAA 65 Query: 50 RTDSGVHALRQVAHFDLVREWVPVIL-CKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 RTD V A RQV L E V + LN L + I Sbjct: 66 RTDKRVSAARQVVSAKLEVENDDVPALLERLNGELPDDIKVFDAVRVIKGFNCKQSCDRR 125 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSP 168 +YL A++ + + + L G + ++ Sbjct: 126 HYTYLLPTFLLAPDEAIDAAFDAVAQRLAPHRAAPTLLERLRGFLAAYVGTRKYHNFTNK 185 Query: 169 IR------------------TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 ++ T D +++ VV +SFL IR V Sbjct: 186 LKPTDMAAQRFIVSFTADDPTYPSGDAADGAEWVKLDVVGQSFLMHMIRKMVAV 239 >gi|297601003|ref|NP_001050239.2| Os03g0381100 [Oryza sativa Japonica Group] gi|255674546|dbj|BAF12153.2| Os03g0381100 [Oryza sativa Japonica Group] Length = 305 Score = 54.9 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 16/204 (7%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV-----TGEIVVVHGAGRTDSGVHA 57 + I Y G ++G+ + + +++ I KA+ + + GRTD GV A Sbjct: 94 IALKIMYFGQRFYGFASEAHTEPTVESEIFKALERAKLLVGSRKESCYSRCGRTDKGVSA 153 Query: 58 LRQVAH-----FDLVREWVPVILCKALN---AYLKISDTISILNLSIVDKQFHARFSAIR 109 Q F ++ A N + L I+ T + + S + Sbjct: 154 TGQEMQKAALKFIGEHDYRNFCKMDAANIVDSLLDITKTPRKPQYKMASEIPLILRSCLF 213 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV--GRHDFTTFRSIHCQASS 167 + + + +E + L A L F Sbjct: 214 DEVNFMCSSEASQALIEHLKDEYHQYMLQAAIFCEALSCLCSPEPDPFEPRHKKRNHIPL 273 Query: 168 PIRTIDHFDVNSFGNLIEIRVVAR 191 R +H + R A Sbjct: 274 MSRQTEHLILFDSYITDMSRCFAY 297 >gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 696 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + N+ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEIFEEVGQTEGICEKLNRQL--PATVRVANVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 42.9 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GS+ V G LE+A + +R+ PLAP LY Sbjct: 364 PFLFFQIEGCSFLLNMIRKIIGSVLAVCRGAREP-ILEEAF-SPERRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis] Length = 399 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 80/267 (29%), Gaps = 43/267 (16%) Query: 23 NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQVAH--------------- 63 + +S++ +I A+ V GRTD+GV A QV Sbjct: 18 DDNSVESAIFSALKRVHLIDDISKCHYQRCGRTDAGVSAFNQVISLYLRSNLRSGVEFVD 77 Query: 64 -FDLVREWVPVILCKALNAYLKISDTISILNLS-----------IVDKQFHARFSAIRRS 111 FD + + S ++ + + + S R Sbjct: 78 EFDPSIPYNAPNTSNQPQSAPSSSTPVTEFDYASVLNKVLPPTIRITGWCPVDRSFSARY 137 Query: 112 YLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV-GRHDFTTFRSIHCQASSPIR 170 A R + + ++ D E MR A + R R Sbjct: 138 SCCGEDWAANLSAGRVYRYYFLRRNYDVELMRSAVKLFEGEHDFRNFCRIDAVNVCDFTR 197 Query: 171 TIDHFD-------VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 T+ D +++ + +V R+FL QIR + L LV K T + L Sbjct: 198 TVFRGDVVEIRKGETPQHDVLAVEIVGRAFLWHQIRCMMSILFLVASKKEKQTIISDLLD 257 Query: 224 AQDRKECGP---LAPPEGLYFDSVEYS 247 + C P LA PE L ++ Sbjct: 258 V-SKSPCKPQYHLADPEPLVLYDCVFN 283 >gi|238883128|gb|EEQ46766.1| tRNA pseudouridine synthase 1 [Candida albicans WO-1] Length = 461 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 15/123 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ I A+ + A RTD GVH Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQRAARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V ++ E +I +N L I I + K F R R Y Y + Sbjct: 62 AAGNVISLKMIIEDPEIINK--INDLL--PKQIRIWGIQRTTKGFDCRKCCSSRIYEYLL 117 Query: 117 ITR 119 T Sbjct: 118 PTF 120 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 5/117 (4%) Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 + + F+ + V I I++ +SF Sbjct: 235 QHFREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSF 294 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + QIR + LV + Q+ K P AP GL ++ Y+ Sbjct: 295 MLHQIRKMIAMAALVVRLSLPCGIINNFFQST--KINIPKAPALGLLLENPVFDGYN 349 >gi|326493306|dbj|BAJ85114.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 221 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I +VA FL +R V + L + A R+ P AP EGL Sbjct: 147 MCIELVANRFLRKMVRVLVATTIREAAAGANEDALLNLMDATCRRATAPPAPAEGLCLVD 206 Query: 244 VEY 246 V Y Sbjct: 207 VGY 209 >gi|308477475|ref|XP_003100951.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] gi|308264295|gb|EFP08248.1| hypothetical protein CRE_16900 [Caenorhabditis remanei] Length = 322 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 83/299 (27%), Gaps = 54/299 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT-----------GEIVVVHGAGR 50 RY I Y+GS + + G + + + + E + + R Sbjct: 5 RRYLFWIGYDGSKFPEMAKGGTGFGVMDLLNQTVSTSLFGFRNERKPEQHECLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLV----------------REWVPVILCKALNAYLKISDTISILNL 94 TD+ VHA+R + + + A L I D S+ Sbjct: 65 TDAKVHAIRNSVICQIPLEYSELDKTPEIKADYMKKWKSTIDAANPGSLVIRDVHSVSAG 124 Query: 95 SIVDKQFHARFSAI-------RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 + + R + E+ AW +P E + A + Sbjct: 125 FCIRRSVSYRKYTYRLAVCRSWELWESIRQEPSIACFSERDYAWRLPPGFSPERLLTAGR 184 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDH----------------FDVNSFGNLIEIRVVAR 191 G +F + N + + +VA+ Sbjct: 185 RFEGEQVMGSFFKHTNREKRFEPITPSALKYILHVGLSNGEAYSINNDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE----CGPLAPPEGLYFDSVEY 246 SF+ QIR + L + ++ L P+APP+GL+ V Y Sbjct: 245 SFVREQIRRMMSCLVNYSYDRIPLATVDWLLNNPISSNFFDMGIPIAPPQGLFLTDVVY 303 >gi|255727174|ref|XP_002548513.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404] gi|240134437|gb|EER33992.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404] Length = 427 Score = 54.1 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 15/123 (12%) Query: 8 IEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE------IVVVHGAGRTDSGVH 56 + Y G+GY G Q Q N +I+ + +A+ ++ E A RTD GVH Sbjct: 2 LGYCGTGYNGMQVQNDPNVKTIEKDVYEAMVKAGAISKENSTDLKKSQFQRAARTDKGVH 61 Query: 57 ALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 A V ++ E ++ +N L + I + + K F R R Y Y + Sbjct: 62 AAGNVISLKMIIEDPEILNK--INDNL--PEQIRLWGIQRTTKGFDCRKCCSSRIYEYLL 117 Query: 117 ITR 119 T Sbjct: 118 PTY 120 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 2/116 (1%) Query: 131 WLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVA 190 + D + F+ + V + I++ Sbjct: 223 HKLDHFRDVMKQYEGTHNFHNFTIGKPFKDTSASRYMISTKMSDPFVIEGTEWVSIKIHG 282 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 +SF+ QIR + +V S + ++ K P AP GL ++ Y Sbjct: 283 QSFMLHQIRKMIAMATMVVRLSLPSKIINNFF--KEDKINIPKAPALGLLLENPVY 336 >gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum] Length = 539 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 93/284 (32%), Gaps = 48/284 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFLVTGE----------IVVVHGAGRT 51 + + Y+G+G++G K+ +I+ +IEKA+F + G + + RT Sbjct: 129 FALCFGYDGTGFYGLSYNKDLKYKAIENAIEKALF-INGHIAPSNVGDLSRIKWSRSSRT 187 Query: 52 DSGVHALRQVAHFDLVREWVPVIL-------CKALNAYLKISDTISILNLSIVDKQFHAR 104 D GVH+L + ++ + +++N +L +++ +L+ + + K F AR Sbjct: 188 DKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHL--PESVRLLSGTRISKSFRAR 245 Query: 105 FSAIRRSYLYRIITRQ----APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 R+Y Y + + + + + + I +L ++ + Sbjct: 246 RGVCERTYHYMVPKKYLEGISIDHMNEILSNYIGNFSYHNYTSQRNTYLAEKNKKQSEDD 305 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS---------------- 204 + + I ++ + + + Sbjct: 306 DDEDEGEDFEEENQPKTILSPTTVTIDRISEKKMFRVNPKNMRTVKKFYVESDPILINNQ 365 Query: 205 -----LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + V L+ ++ + P APP LY Sbjct: 366 EWFRFVVTVAKKIQPIEALKVSIDSP-FIVSTPTAPPFSLYLYE 408 >gi|154339169|ref|XP_001562276.1| pseudouridylate synthase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 689 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCLLYSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + ++ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFDKVGQSGGICERLNRRL--PATVRVASVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GSL V G + LE+AL + +R+ PLAP LY Sbjct: 364 PFLIFQIEGESFLLNMIRKVIGSLLAVCRGARE-SILEEAL-SPERRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|322505105|emb|CAM39306.2| pseudouridylate synthase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 689 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 21/142 (14%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y+GSG+ G Q Q + +++G + +A+ GE + RT Sbjct: 29 LCLLYSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHHHFARSCRT 88 Query: 52 DSGVHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFS 106 D GVHA+R + + +E + +C+ LN L T+ + ++ + F R Sbjct: 89 DRGVHAIRNMVSLFVPKEVFDKVGQSGGICERLNRRL--PATVRVASVMQLSGSFIPRHC 146 Query: 107 AIRRSYLYRIITRQAPLALEKG 128 RR Y Y + + Sbjct: 147 CNRRVYRYMLPLYALLPPCDTW 168 Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR +GSL V G + LE+AL + +R+ PLAP LY Sbjct: 364 PFLIFQIEGESFLLNMIRKVIGSLLAVCRGARE-SILEEAL-SPERRVTTPLAPGPYLYL 421 Query: 242 DSVEY 246 Y Sbjct: 422 AQSTY 426 >gi|322494865|emb|CBZ30168.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 700 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +S +R ++ I + +SF+ QIR +G++ V Sbjct: 533 KRQIPKSADAALRERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCVAAAGL 592 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYF 241 T + L + + P+AP GL+ Sbjct: 593 PETYIRDVLLRKAVRRGIPMAPANGLFL 620 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL--------VTGEIV----VVHG 47 + +I Y G Y G Q +++ + KA+F + V Sbjct: 56 QKVGIIFGYVGECYCGLQWNHLPEYPTVEEVLMKALFETDMISEVNFSNLKVQKLLNFER 115 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 A RTD GVHALR V ++ + P K L A Sbjct: 116 ASRTDKGVHALRNVVSVAVMLPYDPSYTKKHLAAL 150 >gi|119490947|ref|XP_001263134.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181] gi|119411294|gb|EAW21237.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181] Length = 610 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 83/358 (23%), Gaps = 121/358 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVA--------------------------HFDLV 67 ++ E AGRTD GV A QV H D Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAEATSDVEMTSGAHADDT 234 Query: 68 REWVPVILCK--ALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-------- 117 + + + LN L I + F ARFS R Y Y Sbjct: 235 WDDIADEIPYISMLNRVLPDDIRILAWCPNPPP-GFDARFSCRERQYKYFFTQPAFSPTP 293 Query: 118 ----------------------------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 R+A E + LD + + Sbjct: 294 GPLGFAMRGSGDKNASAQLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDH---------------FDVNSFGNLIEIRVVARSFL 194 + + + ++ + + +FL Sbjct: 354 IYHAGIELLDPKNHPLGYVNQPGFQALQDAPAGTDAESGTITNSAAAKVYVFNLHGSAFL 413 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEY 246 Q+R V L LVG G T + L + C P AP L + Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIF 467 >gi|322821113|gb|EFZ27528.1| hypothetical protein TCSYLVIO_6263 [Trypanosoma cruzi] Length = 602 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 20/153 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE---------IVVVHG 47 + +I Y G Y G Q +++ + +A+ ++ E + Sbjct: 68 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 127 Query: 48 AGRTDSGVHALRQVAHFDLVREW----VPVILCKALNAYLKI--SDTISILNLSIVDKQF 101 A RTD GVHALR V +++ + + L I + + V + F Sbjct: 128 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVVYEIVPVTRSF 187 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A R+Y Y + T E R + P Sbjct: 188 NAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 220 Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +SF+ QIR +G++ + + L L + + P+AP GL+ Sbjct: 467 RIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 523 >gi|159127305|gb|EDP52420.1| pseudouridylate synthase 3 [Aspergillus fumigatus A1163] Length = 610 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 58/358 (16%), Positives = 82/358 (22%), Gaps = 121/358 (33%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 116 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPREL 174 Query: 38 ----VTGEIVVVHGAGRTDSGVHALRQVAHF---------------------------DL 66 ++ E AGRTD GV A QV D Sbjct: 175 KPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGQADDT 234 Query: 67 VREWVPVILCKA-LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII-------- 117 + I + LN L I + F ARFS R Y Y Sbjct: 235 WDDIADEIPYISILNRVLPDDIRILAWCPNPPP-GFDARFSCRERQYKYFFTQPAFSPTP 293 Query: 118 ----------------------------TRQAPLALEKGRAWLIPKSLDCENMRIAAQHL 149 R+A E + LD + + Sbjct: 294 GPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353 Query: 150 VGRHDFTTFRSIHCQASSPIRTIDH---------------FDVNSFGNLIEIRVVARSFL 194 + D + F + + + +FL Sbjct: 354 IYHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFL 413 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEY 246 Q+R V L LVG G T + L + C P AP L + Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDV-SKNPCKPTYEMASDAP---LVLWDCIF 467 >gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88] Length = 612 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVVQK--INGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIITRQAPLAL 125 Y I + Sbjct: 237 EYLIPSHCFLPPH 249 Score = 41.0 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D M + ++ +FR + + + + + ++V +SF+ Sbjct: 396 DALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMH 455 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V L+ + + D+K P AP GL + Y+ Sbjct: 456 QIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 507 >gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143] Length = 612 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVVQK--INGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIITRQAPLAL 125 Y I + Sbjct: 237 EYLIPSHCFLPPH 249 Score = 41.0 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D M + ++ +FR + + + + + ++V +SF+ Sbjct: 396 DALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMH 455 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V L+ + + D+K P AP GL + Y+ Sbjct: 456 QIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 507 >gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR] Length = 612 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 13/133 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA V L+ E V+ +N +L S I + + I +K F + R Y Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVVQK--INGHL--SPQIRVWGIEITNKSFSSYHLCDSRIY 236 Query: 113 LYRIITRQAPLAL 125 Y I + Sbjct: 237 EYLIPSHCFLPPH 249 Score = 41.0 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D M + ++ +FR + + + + + ++V +SF+ Sbjct: 396 DALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMH 455 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V L+ + + D+K P AP GL + Y+ Sbjct: 456 QIRKMVAMAALIVRCGCDIKLVPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 507 >gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris RN66] Length = 497 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 28/105 (26%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS------SIQGSIEKAI--------FLVTGEIVVV---- 45 YCM I YNG+ Y+G Q Q N + +I+ +E+A+ E V + Sbjct: 10 YCMAIGYNGTNYYGMQIQSNTNNCKYIETIESKLEEALIKSSMLVIRKSKNEYVNLKEFN 69 Query: 46 ----------HGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 GRTD GVH++ Q+ F + L + LN Sbjct: 70 SSSFLTSINWTRVGRTDKGVHSVCQIVSFRGSLKVSDNDLQEELN 114 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 2/142 (1%) Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQ 164 + Y Y + + + + N + + + Sbjct: 304 NNYNLDHYPYIEEICFNRIEEYELNELELERFSKILNQYTGTHNFHNFTSRLEYNNASAW 363 Query: 165 ASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQA 224 ++ V + L++I + +SFL QIR + + G + + L Sbjct: 364 RHIDKINVNRLPVKNKLKLLKITIKGQSFLLHQIRKIIALAIEIYRGSAPLSSIN--LCF 421 Query: 225 QDRKECGPLAPPEGLYFDSVEY 246 RK LAP +GL D V Y Sbjct: 422 GSRKYSIHLAPSQGLLLDRVYY 443 >gi|268536920|ref|XP_002633595.1| Hypothetical protein CBG05472 [Caenorhabditis briggsae] gi|187035020|emb|CAP25947.1| hypothetical protein CBG_05472 [Caenorhabditis briggsae AF16] Length = 322 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 93/299 (31%), Gaps = 54/299 (18%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL-VTGE----------IVVVHGAGR 50 RY I Y+GS + + G + + + + + G + + R Sbjct: 5 RRYLFWIRYDGSKFPEMAKGGTGFGVMDLLNQTVSQSIFGPRREQHPEQKDKLKFSPSSR 64 Query: 51 TDSGVHALRQVAHFDLVREW-----VPVILCKALNAYLKISDTISILNLSIVDKQ----- 100 TD+ VHA+R + E+ P + + + I D + +L I+D Sbjct: 65 TDAKVHAIRSSVICQVPLEFADLDKCPETKIQYMRTWKSIIDAANPGSLEILDAHSVSAG 124 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR-------IAAQHLVGRH 153 F R S R Y YR+ ++ + R + + L Sbjct: 125 FCIRRSVSYRKYTYRLAVCRSWDLWDTIRQEPSIACFSERDYAWRLPPGFSPERLLRAGK 184 Query: 154 DFTTFRSIHCQASSPIRTID----------------------HFDVNSFGNLIEIRVVAR 191 F + + R + N + + +VA+ Sbjct: 185 IFEGEQVMGSFFKHTNREKRTEPISPSALKYIFYVGLSNGEAYSVENDIYDYYNVTIVAK 244 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKE----CGPLAPPEGLYFDSVEY 246 SF+ QIR + L + + + L+ P+APP+GLY V Y Sbjct: 245 SFVREQIRRMISCLVNYSYDRIPLSTVNWLLKNPISSNFYDMGIPVAPPQGLYLTDVVY 303 >gi|302417130|ref|XP_003006396.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] gi|261353998|gb|EEY16426.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] Length = 439 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 22/129 (17%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRT 51 M+R +GY+G Q + +I+G + K AI + + RT Sbjct: 51 MMR---------TGYYGLQINWDEKTIEGDLFKAFIAAGAISKANADDPKKSSLSRCART 101 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA + L+ E + +NA+L D I + L F A + R Sbjct: 102 DKGVHAAGNLISLKLIIE--DDDIVDKINAHL--PDQIRVWGLQRTSNSFSAYQACDSRW 157 Query: 112 YLYRIITRQ 120 Y Y + T Sbjct: 158 YEYLLPTYC 166 >gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia] gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia] Length = 248 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 54/167 (32%), Gaps = 10/167 (5%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS-SIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHAL 58 + I Y G Y G+ Q++ + +I+ ++ +A+ H GRTD V A Sbjct: 50 VLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRTCLIESRATSNYHRCGRTDKEVSAF 109 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 QV DL + P L L ++ K RS +Y Sbjct: 110 CQVISIDLRSKHPPESQLD--PTSLSSEIDYCGLLNRVLPKNIQCVAWMPLRSSVYSARF 167 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA 165 R + LD MR A LV DF F + Sbjct: 168 DCVSR---SYRYFFPKGDLDIAAMRKACDLLVRHADFRNFCKMDVHN 211 >gi|308812814|ref|XP_003083714.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus tauri] gi|116055595|emb|CAL58263.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus tauri] Length = 543 Score = 53.7 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 S + T + + + V SF+ QIR + S V Sbjct: 351 QSHFRRIHNFSAGSEVERMTITNEDGSTTQSEPFVRVSVRGESFMLYQIRKMIASAVAVS 410 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G L +L R PLAP LY VE+ Sbjct: 411 LGHCPLEFLPASLARPCR-AAMPLAPASTLYLYDVEF 446 Score = 42.6 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 23/132 (17%) Query: 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTG-----------EIVVVHGAG 49 +++ Y G+GY G G+++ +E A+F G + + + Sbjct: 90 VALLLAYVGAGYKGNTHNAQAVRGTTVDDVVEDALFRWGGILLPNYRSKGLQRLKWSRSS 149 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GV +L V + + + +L D + + K F Sbjct: 150 RTDKGVSSLCTVVSLRAEIDPEVWTTDVEARATARDITKHL--PDDVECFAVYNTPKSFQ 207 Query: 103 ARFSAIRRSYLY 114 AR + R+Y Y Sbjct: 208 ARRECVMRTYEY 219 >gi|255550749|ref|XP_002516423.1| hypothetical protein RCOM_1427170 [Ricinus communis] gi|223544458|gb|EEF45978.1| hypothetical protein RCOM_1427170 [Ricinus communis] Length = 82 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF 36 + + Y G GY G Q+ SI+G +EKA+F Sbjct: 31 RKIAIFFAYCGVGYQGMQKNPGTKSIEGDLEKALF 65 >gi|301105176|ref|XP_002901672.1| ubiquitin fusion degradation protein, putative [Phytophthora infestans T30-4] gi|262100676|gb|EEY58728.1| ubiquitin fusion degradation protein, putative [Phytophthora infestans T30-4] Length = 840 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 24/233 (10%) Query: 30 SIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHF---------------------DLVR 68 +++A+ E + V R A + D Sbjct: 82 ELKEALNASLPENIRVFSCTRVSKRFSARKNCVLREYEYFMPLSFLRGSLIGSDGEDFDT 141 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 + C+AL Y + D + + A+ + Y + + Sbjct: 142 DEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKVQAKKKHYKAHYRRSVAESDDAGVEDND 201 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRV 188 +D + + + T + S + + I + Sbjct: 202 EDAEEESGID--DYSEESSQFEDEEELTRKLLPRHRRSIYSCSGSLVPDFCGEPHLRIHI 259 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 V ++FL QIR VG V + + + AL +R P+AP EGL Sbjct: 260 VGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLT-NRIVRVPIAPAEGLVL 311 Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 64/197 (32%), Gaps = 20/197 (10%) Query: 12 GSGYFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVA 62 G+GY G Q N +I+ I AIF + + RTD GVHA V Sbjct: 2 GTGYHGLQLNDNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAGCIVF 61 Query: 63 HFDL---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 L L +ALNA L + I + + + V K+F AR + + R Y Sbjct: 62 SGKLLIDEENKVDPISGRVHELKEALNASL--PENIRVFSCTRVSKRFSARKNCVLREYE 119 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 Y + +L A + G HDF F Sbjct: 120 YFMPLSFLRGSLIGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYKVQAKKK 179 Query: 174 HFDVNSFGNLIEIRVVA 190 H+ + ++ E Sbjct: 180 HYKAHYRRSVAESDDAG 196 >gi|239791165|dbj|BAH72086.1| ACYPI006976 [Acyrthosiphon pisum] Length = 157 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 6 MIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVT----GEIVVVHGAGRTDSGVHALRQ 60 I Y G Y G+ Q + +I+ + +A+ + + H GRTD GV + Q Sbjct: 61 FKILYLGWDYHGFATQDVSEKTIEYELFRALTICCLIESRQTSNYHRCGRTDKGVSSFSQ 120 Query: 61 VAHFDLV---REWVPVILCKALNAYLKIS 86 V + + + CK LN L Sbjct: 121 VISLTVRSNGDDSEELPYCKMLNRLLPKD 149 >gi|68059255|ref|XP_671610.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56487947|emb|CAH99999.1| conserved hypothetical protein [Plasmodium berghei] Length = 332 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%) Query: 2 IRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVT-------GEIVVVHGAGRTDS 53 +Y + + Y GS Y G Q Q K +I+ IE+ + + G + + RTD Sbjct: 28 KKYGLCVGYIGSRYHGCQGQGKEYMTIENEIERILTKINAVKKNSKGFNYCLSRSARTDL 87 Query: 54 GVHALRQVAHF 64 GVHAL + + Sbjct: 88 GVHALYNLFVY 98 >gi|315929089|gb|EFV08321.1| tRNA pseudouridine synthase II [Campylobacter jejuni subsp. jejuni 305] Length = 58 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 A FL QIR V S+ V +GK + +L++ ++A+ + LAPP GLY + Y Sbjct: 1 FKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQIEAKK-QYNHFLAPPNGLYLSRICY 58 >gi|198426359|ref|XP_002130657.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine isomerase 3) (tRNA pseudouridylate synthase 3) [Ciona intestinalis] Length = 557 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R + + Y G Y G Q +N +I+ + +A+ V + GRTD V Sbjct: 101 RRIALKVAYLGWDYEGLQENENLDDTIERILREALRRVRLVPADRSIYFSRCGRTDKEVS 160 Query: 57 ALRQVAHFDL 66 A QV + Sbjct: 161 AFSQVIVVKV 170 >gi|71413504|ref|XP_808888.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70873184|gb|EAN87037.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 634 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 20/153 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE---------IVVVHG 47 + +I Y G Y G Q +++ + +A+ ++ E + Sbjct: 100 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 159 Query: 48 AGRTDSGVHALRQVAHFDLVREW----VPVILCKALNAYLKI--SDTISILNLSIVDKQF 101 A RTD GVHALR V +++ + + L I + + V + F Sbjct: 160 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIIVYEIVPVTRSF 219 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A R+Y Y + T E R + P Sbjct: 220 NAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 252 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +SF+ QIR +G++ + + L L + + P+AP GL+ Sbjct: 499 RIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 555 >gi|145354770|ref|XP_001421649.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581887|gb|ABO99942.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 556 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 30/97 (30%), Gaps = 1/97 (1%) Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 + T D + I + V SF+ QIR + S V Sbjct: 355 PSHFRRIHNFTAGADVERMEITNDDGSKTTSEPFIRVSVRGESFMLYQIRKMIASAVAVS 414 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G L +L R PLAP LY VE+ Sbjct: 415 LGHCPLEFLPASLSRPCR-AAMPLAPASTLYLYDVEF 450 Score = 42.9 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 23/132 (17%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTG-----------EIVVVHGAG 49 +++ Y G GY G G+++ +E A+F G + + + Sbjct: 91 VAIVLAYVGQGYKGNTHNAQAPRGTTVDDVVEDALFAWGGILMPNYRSRGLQRLKWSRSS 150 Query: 50 RTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFH 102 RTD GV +L V + + + +L + + + K F Sbjct: 151 RTDKGVSSLCTVVSLRAEIDPEVWTKDVEARETAREITKHL--PEDVECFAVYNTPKSFQ 208 Query: 103 ARFSAIRRSYLY 114 AR I R+Y Y Sbjct: 209 ARRECIMRTYEY 220 >gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88] Length = 517 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+G+GY G Q + +I+G + AI + + RTD Sbjct: 48 KKVAVLLGYSGTGYKGMQLSETEKTIEGELFAAFVAAGAISKANATDPKKSSLVRCARTD 107 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 GVHA + L+ E + + +N L + + ++ + ++ + Sbjct: 108 KGVHAAGNIVSLKLIVE--DDDIIQKINEKLSSQIRVWDILVTNKSFSSYQLTYLGKKLF 165 Query: 113 LY 114 Y Sbjct: 166 EY 167 Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 5/110 (4%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRS 200 T + + + + + + ++V +SF+ QIR Sbjct: 300 KYVGTNNFFNYTIQKTHADPSSKRHIKSFKMAEQPIIINGTEWLSLKVHGQSFMMHQIRK 359 Query: 201 FVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 V +V + + A K P AP GL + Y+ Sbjct: 360 MVAMAAMVVRCGCDPQRIVETYGAN--KIAIPKAPGLGLLLERPVFDSYN 407 >gi|221113814|ref|XP_002153998.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 267 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 53/165 (32%), Gaps = 16/165 (9%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVH 56 R + Y G Y G Q+ ++I+ +I A+ V GRTD GV Sbjct: 79 HRIALKFLYLGWDYQGLANQETTNNTIEDAIFNAMIKAKLIEDRVLCKYSRCGRTDKGVS 138 Query: 57 ALRQVAHFDL---------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 A QV ++ + + LN L I +L + V + F ARF Sbjct: 139 AFGQVIALNVRSNTLVSEEEDTREEISYVRLLNKIL--PPEIRMLAFARVPQDFDARFDC 196 Query: 108 IRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGR 152 R Y Y ++ + L A D N Sbjct: 197 DTRMYKYFFPAKRMDIKLMDAAAQKFVGEKDFRNFCKFIILTQSW 241 >gi|308805336|ref|XP_003079980.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri] gi|116058437|emb|CAL53626.1| Pseudouridylate synthase (ISS) [Ostreococcus tauri] Length = 409 Score = 53.0 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 88/290 (30%), Gaps = 47/290 (16%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS----------SIQGSIEKAIFLVTGEIVVVHGAGRTDS 53 + Y G + G+ + S+ S++ A+ +T + +GRTD Sbjct: 114 FAFRCAYRGVAFAGYAWNADVDGEKEWAFGEASVSASLQWALRDITDKGRPTPSSGRTDR 173 Query: 54 GVHALRQVAHFDLVREWVPVILCKAL---NAYLKISDTISILNLSIVDKQFHARFSAIRR 110 GV A F V + L + + + + + V FHA FSA RR Sbjct: 174 GVSAGASCVSFWTRHPEVTSERIERLVNEESAPGKAGVLRVSEIREVPSSFHATFSAFRR 233 Query: 111 SYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT-------------- 156 Y+Y + Q A L +++ +A Sbjct: 234 RYVYVLPKTQKFGEERTPCAHLDGATMNRILQPLAEVDGPIDMHAFARGTPPGRSSEVNF 293 Query: 157 -------------------TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQ 197 T I T+ +++ I + A FL Sbjct: 294 SVARAFDARLPRVALDDPDTHAGIRRSRRDVDITVSDSAAAEDLDVVVIELEADRFLRKL 353 Query: 198 IRSFVGSLKLVGDGKWTSTDL-EKALQAQDRKECGPLAPPEGLYFDSVEY 246 R V + G +S D+ + +A+DR+ P AP GL Y Sbjct: 354 ARCLVATAAREAAGPPSSDDVLLRIARARDRRLAAPPAPALGLVLAGASY 403 >gi|71664275|ref|XP_819120.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884407|gb|EAN97269.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 621 Score = 52.6 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 20/153 (13%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL---VTGE---------IVVVHG 47 + +I Y G Y G Q +++ + +A+ ++ E + Sbjct: 87 RKVAIIFGYVGERYCGLQWNHLPGYPTVEEELLRALHRTGMISKENYEQEKVQQKLNWER 146 Query: 48 AGRTDSGVHALRQVAHFDLVREW----VPVILCKALNAYLKI--SDTISILNLSIVDKQF 101 A RTD GVHALR V +++ + + L I + + V + F Sbjct: 147 ASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVVYEIVPVTRSF 206 Query: 102 HARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 +A R+Y Y + T E R + P Sbjct: 207 NAYMLCGARTYEYYLPTFALMSLDEYSRDYFPP 239 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 I + +SF+ QIR +G++ + + L L + + P+AP GL+ Sbjct: 486 RIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGLFL 542 >gi|269123330|ref|YP_003305907.1| Pseudouridylate synthase-like protein [Streptobacillus moniliformis DSM 12112] gi|268314656|gb|ACZ01030.1| Pseudouridylate synthase-like protein [Streptobacillus moniliformis DSM 12112] Length = 211 Score = 52.6 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 72/226 (31%), Gaps = 27/226 (11%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSI-EKAIFLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y + I Y G + + K+ +++G + E + + AGRTD+ V A Sbjct: 8 YLLEISYKGKKFDCFDEIKDKKTVKGVLKEYILSKGIKIYKGLQQAGRTDARVSAYSNYI 67 Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 +F R + ++ + LKI + I N ++ R + Sbjct: 68 YFVADRFNIDILDINVDISGLKIKNIIETKNDIVLPDIVEKRIYIYFYPKKFL------- 120 Query: 123 LALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN 182 ++D E + + + G DF+ F + DV Sbjct: 121 -------------NVDKETILKRCEEISGYRDFSEFTNHKGLKL----KNHFRDVKVTYV 163 Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD--LEKALQAQD 226 ++ SF+ Q+R G + LEK + D Sbjct: 164 EEKLYFEGNSFMPQQVRIMSGYILKGKKEAMDPKFLVLEKIIFKGD 209 >gi|221508095|gb|EEE33682.1| pseudouridylate synthase, putative [Toxoplasma gondii VEG] Length = 904 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 27/62 (43%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + +SFL QIR VG V G T T L AL+ + AP EGL S Sbjct: 762 VIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSP 821 Query: 245 EY 246 Y Sbjct: 822 VY 823 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 2 IRYCMIIEYNGSGYFGWQRQ 21 +Y ++ YNG + G Q+Q Sbjct: 175 KKYALLFGYNGENFHGLQKQ 194 Score = 35.6 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPYCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 >gi|221486308|gb|EEE24569.1| pseudouridylate synthase, putative [Toxoplasma gondii GT1] Length = 901 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 27/62 (43%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + +SFL QIR VG V G T T L AL+ + AP EGL S Sbjct: 759 VIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSP 818 Query: 245 EY 246 Y Sbjct: 819 VY 820 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 2 IRYCMIIEYNGSGYFGWQRQ 21 +Y ++ YNG + G Q+Q Sbjct: 175 KKYALLFGYNGENFHGLQKQ 194 Score = 35.6 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 >gi|237833615|ref|XP_002366105.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49] gi|211963769|gb|EEA98964.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49] Length = 904 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 27/62 (43%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 I + +SFL QIR VG V G T T L AL+ + AP EGL S Sbjct: 762 VIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLSP 821 Query: 245 EY 246 Y Sbjct: 822 VY 823 Score = 36.8 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 2 IRYCMIIEYNGSGYFGWQRQ 21 +Y ++ YNG + G Q+Q Sbjct: 175 KKYALLFGYNGENFHGLQKQ 194 Score = 35.6 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Query: 25 SSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAHFDL 66 +++G +E+A+ G + + A RTD GVHA V L Sbjct: 281 RTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSLKL 331 >gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi] gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi] Length = 234 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 67/205 (32%), Gaps = 8/205 (3%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN-GSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVH 56 R ++ Y G Y G Q+ +++ + KA+ E + +GRTD GV Sbjct: 30 RRIALMFMYFGWEYNGLVEQREIARTVEEEMRKALIKTKLVENWENCSWNRSGRTDKGVS 89 Query: 57 ALRQVAHFDL---VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 A +QVA + E V +A + + + + +++ + + + Sbjct: 90 AFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTLPTNIRVLAWAPV 149 Query: 114 YRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTID 173 R + + + + E MR A Q LVG HDF F I Sbjct: 150 PRNFSARYNCTQRTYTYAFPRTNFNIEAMRQACQFLVGEHDFRNFCRIDMNKKRVEMNYI 209 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQI 198 + + I I Sbjct: 210 RTITYADISFISYSFNGLXXKKGTI 234 >gi|71418252|ref|XP_810793.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener] gi|70875381|gb|EAN88942.1| pseudouridylate synthase I, putative [Trypanosoma cruzi] Length = 655 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 15/144 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+GY G Q Q + +++G + +A+ V G++ + RT Sbjct: 26 LCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDVHHFSRSCRT 85 Query: 52 DSGVHALRQVAH-FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D GVHA+R + F + C+ + L + ++I + + Sbjct: 86 DRGVHAVRNLVCLFVFTERIEALGGCEKIKEMLNTTLPLTIRVARVTPLMGNFIPRFSCN 145 Query: 111 SYLYRIITRQAPLALEKGRAWLIP 134 +Y + Sbjct: 146 RRVYHYLIPAYAFVAPCDYWKSFY 169 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR VG+L V G + E + DR+ PLAP LY Sbjct: 325 PFLVFQIEGNSFLFNMIRKIVGTLIAVLRGARETLFAEAV--SPDRRVVCPLAPGPYLYL 382 >gi|300706061|ref|XP_002995341.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01] gi|239604377|gb|EEQ81670.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01] Length = 344 Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 86/287 (29%), Gaps = 44/287 (15%) Query: 2 IRYC--MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVT---------GEIVVVHGAGR 50 ++ I Y G+GY G Q + ++I+ +I + +F + + + + R Sbjct: 1 MKIKAGFCIGYIGTGYSGLQLNGDYNTIEKAISECLFSCSAISSQNAKDPSKIHLKSSSR 60 Query: 51 TDSGVHALRQVAHFDLVREWVPVILCK------ALNAYLK-------------------I 85 TD GVHA + + + V K + N YL Sbjct: 61 TDKGVHAAFNLISCKIECQITDVFFQKLKECLFSKNIYLYKILRLTKSFIPTNLTISRTY 120 Query: 86 SDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA 145 + L+ + + ++ R+ + + D + Sbjct: 121 EYILPTYFLAKSNFSAECSDLIAKDLNRDKMTKREYNEKDIEQIFGYLADKDDIKYFCDI 180 Query: 146 AQHLVG----RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSF 201 +G + T Q + V I+I + +SFL QIR Sbjct: 181 FTKFLGTKNFHNFTTLSNHKGKQRYIKNIEFSNAYVIDDIEYIKITIEGQSFLLHQIRKM 240 Query: 202 VGSLKLVGDGKWTSTDLEKALQA--QDRKECGPLAPPEGLYFDSVEY 246 + L+ K + + D P P + L DS ++ Sbjct: 241 IYFSVLLCRYKR--NEFSTIFEKVFSDEYLHVPKGPSQYLLLDSPKF 285 >gi|317027085|ref|XP_001400055.2| pseudouridylate synthase 3 [Aspergillus niger CBS 513.88] Length = 608 Score = 51.8 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 48/218 (22%), Gaps = 6/218 (2%) Query: 35 IFLVTGEIVVVHG-AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILN 93 + V E + V R G A + A + + Sbjct: 250 LNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFVPRDGTGKP 309 Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 + + Y + L+ + Sbjct: 310 PKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQIESFYRDIFRADIELLDARTNPL 369 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFG---NLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 + T + +S + + +FL Q+R V L LVG Sbjct: 370 GYVTQPEFQARPASGADESAESSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVGQ 429 Query: 211 GKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 G + ++ L RK +A L Y Sbjct: 430 GLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIY 467 >gi|269866935|ref|XP_002652438.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] gi|220062500|gb|EED41617.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348] Length = 107 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIF 36 + + I Y+G Y G Q+ NG SI +E A+ Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGLSIGEVLENALR 99 >gi|223998991|ref|XP_002289168.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] gi|220974376|gb|EED92705.1| pseudouridylate synthase [Thalassiosira pseudonana CCMP1335] Length = 469 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 65/271 (23%), Gaps = 61/271 (22%) Query: 20 RQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 Q+ + Q I +A+ + V + + D E I CK Sbjct: 210 IQRKTYTDQWKIRRALSTRLPPDI-----------VIRSTWIWNGDEAFEARQRISCKTY 258 Query: 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDC 139 +L+ + + + ++ W P LD Sbjct: 259 VYHLRFRSLTYCSPSTTNNDDTSQLHP------ICHAGPHLLRRISDQNNVWSSPWPLDP 312 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIR-------------------------TIDH 174 + A Q VG HDF F + R Sbjct: 313 SLLPTACQLFVGVHDFGNFIHKDDRRGGSTRGKRNATDREKSHSIDLFQFTVDLQLDQYE 372 Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-----QAQDRKE 229 + + A+ F +R+ VG + V G D+ L + R Sbjct: 373 DRSIPPIYDAKFTLKAKGFHRQMVRNLVGFVVDVARGLRLLEDIPMLLTGNAGDEKTRIG 432 Query: 230 CGPL--------------APPEGLYFDSVEY 246 AP GL VEY Sbjct: 433 DAISSSIIDASLPSLVNAAPACGLCLAKVEY 463 Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 20 RQKNGS-SIQGSIEKAIFLVTGEIV---VVHGAGRTDSGVHALRQVAHFDLV 67 +Q ++Q +E A+ TG + V GAGRTD GVHA QV FD+ Sbjct: 103 KQNKAPITVQQQLETALHQWTGLSIATLRVRGAGRTDKGVHASGQVVGFDVP 154 >gi|154334040|ref|XP_001563275.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060287|emb|CAM45698.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 764 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 31/88 (35%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 +S+ +R ++ I + +SF+ QIR +G++ + Sbjct: 597 KLHVPKSVDTALQERMRQHIRDVYAGGIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGL 656 Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYF 241 + L + + P+ P GL+ Sbjct: 657 PLNHIRDVLLRKGVRRGIPMVPANGLFL 684 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 14/95 (14%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFL--------VTGEIV----VVHG 47 + +I Y G Y G Q +++ ++ KA+F V Sbjct: 122 QKVGIIFGYVGECYCGLQWNHLPEYPTVEEALMKALFETDMISEVNFANFKVQQLLNFER 181 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 A RTD GVHALR V ++ + P + L A Sbjct: 182 ASRTDKGVHALRNVVSVAVMLPYDPAYAKRRLAAM 216 >gi|68059018|ref|XP_671487.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56487712|emb|CAH95346.1| hypothetical protein PB001270.00.0 [Plasmodium berghei] Length = 69 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%) Query: 193 FLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV 244 FL+ IR VG L VG G D++ AL + APP+GL + Sbjct: 1 FLYHMIRIIVGVLIQVGVGILNFQDVKDALYNSKPLKVKLCAPPQGLCLKKI 52 >gi|71423309|ref|XP_812417.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener] gi|70877194|gb|EAN90566.1| pseudouridylate synthase I, putative [Trypanosoma cruzi] Length = 655 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 15/144 (10%) Query: 6 MIIEYNGSGYFGWQRQKNGS---SIQGSIEKAIF-----------LVTGEIVVVHGAGRT 51 + + Y G+GY G Q Q + +++G + +A+ V G++ + RT Sbjct: 26 LCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARSCRT 85 Query: 52 DSGVHALRQVAH-FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 D VHA+R + F + C+ + L + ++I + + Sbjct: 86 DRAVHAVRNLICLFVFTERIEALGGCEKIKEMLNTTLPLTIRIARVTPLMGNFIPRFSCN 145 Query: 111 SYLYRIITRQAPLALEKGRAWLIP 134 +Y + Sbjct: 146 RRVYHYLIPAYAFVAPCDYWKGFY 169 Score = 43.3 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + ++ SFL IR VG+L V G T +AL + DR+ PLAP LY Sbjct: 325 PFLVFQIEGNSFLFNMIRKIVGTLIAVLRGARE-TLFAEAL-SPDRRVVCPLAPGPYLYL 382 >gi|257126166|ref|YP_003164280.1| Pseudouridylate synthase-like protein [Leptotrichia buccalis C-1013-b] gi|257050105|gb|ACV39289.1| Pseudouridylate synthase-like protein [Leptotrichia buccalis C-1013-b] Length = 340 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 77/252 (30%), Gaps = 40/252 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVHALR 59 Y +EY+G + + N S++ K + + + AGRTD+ V A Sbjct: 26 YMFFVEYDGQKFESFDENPNKKSVKSEFRKILE---NNKIKIFKGIQQAGRTDANVSAKE 82 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + + + L LKI+ + L + R+ R Sbjct: 83 NILYINSKGIIDFSKLKFLETEGLKINKIVRTLPFLEFPQMIEKRYYIYEYPKKLRKN-- 140 Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179 D E + + + G+ +F F S + R ++ Sbjct: 141 ------------------DEERINQICKKVSGKKNFYEFTSEKGKKLKNHR----REIFV 178 Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLK---LVGDGKWTSTDLE-KALQAQDRKECGPLAP 235 ++ V FL Q+R + K T + E + L +D+ G Sbjct: 179 KYENDKLYFVGDGFLPQQVRIMSNFILNNTKFDIEKLTDENFENRKLGIKDKPLDGKY-- 236 Query: 236 PEGLYFDSVEYS 247 L V++S Sbjct: 237 ---LTLMKVDFS 245 >gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 634 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 11/105 (10%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTD 52 + +++ Y+GSGY G Q + +I+G + AI + + RTD Sbjct: 121 KKVAVMLGYSGSGYKGMQLSETEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTD 180 Query: 53 SGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIV 97 GVHA V L+ E V+ +N +L ++ Sbjct: 181 KGVHAAGNVVSLKLIVEDPNVVQK--INGHLSPQIRQRQAEVAHY 223 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D M + ++ +FR + + + + + ++V +SF+ Sbjct: 338 DALGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMH 397 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V L+ + + D+K P AP GL + Y+ Sbjct: 398 QIRKMVAMTALIVRCGCDIQLVPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 449 >gi|221113816|ref|XP_002154062.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 233 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 2/128 (1%) Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 S D + + I Sbjct: 8 FFGHCMFYAEKHYCYSFDNSMIPFFGCGSHLDYLEQNQCYSETFILDQSCFIHEMVKKDL 67 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEG 238 ++ E+ + +FL Q+R V L L+G G ++ L ++ ++ LA Sbjct: 68 VDICEMEITGLAFLWHQVRCMVAVLLLIGLGVEKPEIIDHLLDVESCPKRPQYELASEIP 127 Query: 239 LYFDSVEY 246 L Y Sbjct: 128 LVLYDCTY 135 >gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii] Length = 175 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 53/165 (32%), Gaps = 18/165 (10%) Query: 79 LNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLD 138 LN L I +L V FHARFS + R Y Y I + K + + D Sbjct: 8 LNRAL--PADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRLLGEHD 65 Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 N + + + + L + V +FL Q+ Sbjct: 66 FRNF--------------CKMDADNIHNYTRQILAFDILPIEECLWVMHVRGNAFLWHQV 111 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYF 241 R L ++G G T T ++ L RK +AP L Sbjct: 112 RCMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVL 156 >gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Penicillium marneffei ATCC 18224] Length = 630 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 60/227 (26%), Gaps = 17/227 (7%) Query: 33 KAIFLVTGEIVVVHGAGR---TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTI 89 + + V + + + D + + +L+ + Sbjct: 268 QVLNGVLPQDIRILAWCPNPGPDFDARFSCRERQYRYFFTQPAFNPIAGELGFLRSAAHH 327 Query: 90 SILNLSIVDKQF----HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIA 145 + + + R + + ++ + ++ Sbjct: 328 RGIAKKELRDGWLDIEAMREACKHYVGRHDFRNFCRVDTSKQIENFERIIYRASIDLVDP 387 Query: 146 AQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSL 205 + +G F+ P + + + S + + +FL Q+R V L Sbjct: 388 RTNPLGYVGSKDFQPTRNPVDMPNGSNVNEEQPSTPLVYTFTLHGSAFLWHQVRHMVAVL 447 Query: 206 KLVGDGKWTSTDLEKALQAQDRKECGPL------APPEGLYFDSVEY 246 LVG G + + + + L + C P AP L + Sbjct: 448 FLVGQGVESPSIVPELLDI-SKNPCKPTYEMASDAP---LVLWDCIF 490 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 32/90 (35%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ I KA+ Sbjct: 100 IALKFAYLGQRYNGF-EHANGNATPLPTIEEEIWKALRKTRLIFPTTTSPMELSLDRHDR 158 Query: 38 -----VTGEIVVVHGAGRTDSGVHALRQVA 62 ++ + GRTD GV A QV Sbjct: 159 TQPFDLSWDGCQYSKCGRTDRGVSAFGQVI 188 >gi|159478785|ref|XP_001697481.1| predicted protein [Chlamydomonas reinhardtii] gi|158274360|gb|EDP00143.1| predicted protein [Chlamydomonas reinhardtii] Length = 446 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 77/279 (27%), Gaps = 59/279 (21%) Query: 26 SIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDL---------- 66 +I+ +EKA+F + + A RTD GVH+L V + Sbjct: 63 TIEQVLEKALFAAGCISEANFGSFSKIRWSRASRTDKGVHSLGTVMGLRMLVDDAKYVAG 122 Query: 67 -----------------------------VREWVPVILCKALNAYLKISDTISILNLSIV 97 + + YL +S + S Sbjct: 123 PDGDCEGLALAEAVNTHLPPQIRVFTTNKKFSARHMCEGRVYQYYLPVSMIDLKCDGSEE 182 Query: 98 DKQFHARFSAIRRSYL--YRIITRQAPLALEKGRAWLIPKSLDCE--NMRIAAQHLVGRH 153 D Q A+F + Y + + + G + + + D + L+ R Sbjct: 183 DAQRLAKFRDALKCYEGSHPFHNFTKRVTYQPGGSNVQFRPGDGVVGRYGPYGRVLLLRW 242 Query: 154 DFTTFRSIHCQASSPIRTI------DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 + R V + + V +SF+ IR +G+ Sbjct: 243 QTEVDPRDRITQTFYRRIYSFTAADPKPMVEGGEPCLLLEVSGQSFMLHHIRHMIGAAVA 302 Query: 208 VGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 V G + L +L R P APP L + Sbjct: 303 VTLGLISKEVLLGSLTPPAR-VTLPRAPPHTLLLSDCSF 340 >gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis] Length = 593 Score = 50.3 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 21/134 (15%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL-------VTGEIVVVHGAGRTD 52 RY + + Y G Y G+ RQ++ +I+G + A+ + + + GRTD Sbjct: 78 QRYVALELLYLGHAYGGFARQEHTEQTIEGHLFAALRTTRLVPAEASWQELRYSRGGRTD 137 Query: 53 SGVHALRQVAHFDL----------VREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 GV AL QV L V + LN L I +L + V F Sbjct: 138 KGVSALGQVVALLLRSAARTGEVQPEADVELDYPSLLNRVL--PQDIRVLGWADVPDDFS 195 Query: 103 ARFSAIRRSYLYRI 116 ARFSA R Y Y I Sbjct: 196 ARFSAQYREYKYLI 209 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 10/119 (8%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV--------NSFGNLIEIRVV 189 D M+ AA +G HDF F + + R L+++ + Sbjct: 287 DVGRMQEAAAFFLGEHDFRNFCKVDVAQVTNFRRRVLDCRVEELPACAWGGRRLLQLHIR 346 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 +FL Q+R L +VG G+ + L Q RK LA E L S Y Sbjct: 347 GTAFLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQQVPRKPQYTLASEEPLLLYSCAY 405 >gi|320531321|ref|ZP_08032295.1| hypothetical protein HMPREF9057_00159 [Actinomyces sp. oral taxon 171 str. F0337] gi|320136470|gb|EFW28444.1| hypothetical protein HMPREF9057_00159 [Actinomyces sp. oral taxon 171 str. F0337] Length = 54 Score = 49.9 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 214 TSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 T + L A+ R+ P+APP GL + V Y Sbjct: 1 PVTWPGELLAARTRQSAAPVAPPHGLTLEEVTY 33 >gi|313223491|emb|CBY41917.1| unnamed protein product [Oikopleura dioica] Length = 281 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 118 TRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDV 177 A + + I LD E M+ AA +L+G HDF F + + +R D+ Sbjct: 60 NFVAIINRQLPDDIWITSGLDVELMKEAASYLIGEHDFRNFSQAQLERQNTVRVCFAADI 119 Query: 178 ---NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGP 232 + ++ + A FL+ QIR + L LVG+ ST +++ L + R+ Sbjct: 120 KQVPNMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELLDVEKYPRRPSYK 179 Query: 233 LAPPEGLYFDSVEY 246 A P+GL EY Sbjct: 180 YANPDGLVLIDCEY 193 >gi|148238175|ref|NP_001088988.1| pseudouridylate synthase 1 [Xenopus laevis] gi|57032536|gb|AAH88978.1| LOC496371 protein [Xenopus laevis] Length = 167 Score = 49.5 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 19/99 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIV-----------VVHG 47 + +I Y+G GY G QR +I+ + +A+ V E + Sbjct: 55 RKVVFLIAYSGKGYHGMQRNVGTSQFKTIEDELVQAL--VLSECIPDNHAEDMKKMSFQR 112 Query: 48 AGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 RTD GV A QV + W+ + + +N L Sbjct: 113 CARTDKGVSAAGQVVSLKI---WLIDNVVEKINENLPSH 148 >gi|147812480|emb|CAN72774.1| hypothetical protein VITISV_026284 [Vitis vinifera] Length = 812 Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV 38 RY + +EY G+ + G Q+Q N ++ G++ + Sbjct: 674 QRYLVAVEYIGTRFSGSQQQLNCRTVVGALSGVFSEL 710 >gi|170586436|ref|XP_001897985.1| tRNA pseudouridine synthase A [Brugia malayi] gi|158594380|gb|EDP32964.1| tRNA pseudouridine synthase A, putative [Brugia malayi] Length = 260 Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 2/112 (1%) Query: 135 KSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFL 194 C I + D ++ R IH P + ++ I + + +SF+ Sbjct: 1 MWDACRTTLIIDDPFITYEDRSSMRYIHDFKCGPTQLVEDEVRGGMVEFITLYITGQSFM 60 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 QIR +G G T++ ++ + P AP GL D V Y Sbjct: 61 LHQIRKMIGMTVATFRGLCGKTEVANTFLSE--RMDVPKAPGLGLVLDKVHY 110 >gi|170583041|ref|XP_001896406.1| hypothetical protein Bm1_24730 [Brugia malayi] gi|158596406|gb|EDP34751.1| hypothetical protein Bm1_24730 [Brugia malayi] Length = 189 Score = 49.1 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Query: 175 FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGP 232 D + +++ + + FL QIR + L +G G + + L + K Sbjct: 8 NDKATHYEFLQLTIKGKGFLWHQIRCIMALLCEIGLGNEKPDIITELLDIRLMPSKPIYG 67 Query: 233 LAPPEGLYFDSVEY 246 LAP L Y Sbjct: 68 LAPAFPLCLFDCSY 81 >gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480] Length = 614 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 406 FTVHGTAFLWHQIRHMVGILFLVGQGLEPPSIVPQLLDVTKNPRRPVYEMASDSPLVLWD 465 Query: 244 VEY 246 + Sbjct: 466 CIF 468 Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G NG +I+ + KA+ T I H D V + Sbjct: 93 IALKFAYLGKRYNGL-EHANGNFTEVPTIEEELWKALRK-TRLIFPTHKDCIDDFAVPSR 150 Query: 59 RQVAHFDLVREWVPVILCKALNAY 82 Q H+D + K ++A+ Sbjct: 151 PQSIHWDGCQYSKCGRTDKGVSAF 174 >gi|310794568|gb|EFQ30029.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001] Length = 570 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 4 YCMIIEYNGSGYFGW--QRQKNGSSIQGSIEKAIFL---VTGEIVVVHG--------AGR 50 + + Y G Y G+ + +I+G + A+ + E V GR Sbjct: 94 IALKLAYLGKRYGGFEYAASASLPTIEGELWNALTKACLIFPEDPDVVNFDCCEYSKCGR 153 Query: 51 TDSGVHALRQVA 62 TD GV A QV Sbjct: 154 TDRGVSAFGQVI 165 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 56/208 (26%), Gaps = 28/208 (13%) Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 + K LN L I+ S F ARFS R Y Y Sbjct: 222 WDDINDEIQYVKVLNRLLPDDIRITAWCPSPPP-DFSARFSCEERQYRYFFTQPAFTPTA 280 Query: 126 EKGRAWL---IPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF------- 175 LD E M AAQ VG HDF F + F Sbjct: 281 ATSDGTPSGLREGYLDIEAMNEAAQRFVGDHDFRNFCKVDGSKQITNFERRMFEASVGEV 340 Query: 176 ---------------DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 D + + +FL QIR V L LVG + + Sbjct: 341 RDVGSALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTILFLVGQRLERPELVTE 400 Query: 221 ALQAQD--RKECGPLAPPEGLYFDSVEY 246 L + RK LA L + + Sbjct: 401 LLDVEKSPRKPNYDLAHETPLVLWNCVF 428 >gi|320164168|gb|EFW41067.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 210 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFL 37 + M++ + G+ Y G Q + +I+G + KA Sbjct: 165 RKVAMLVSFVGTRYRGMQYNGDVPTIEGELLKAFAK 200 >gi|332262433|ref|XP_003280267.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Nomascus leucogenys] Length = 191 Score = 49.1 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 17/98 (17%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLVTGEIVVVHG----------A 48 + +++ Y+G GY G QR +I+ + A+ +G I HG Sbjct: 84 RKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVR-SGCIPENHGEDMRKMSFQRC 142 Query: 49 GRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKIS 86 RTD GV A QV + W+ + + +N++L Sbjct: 143 ARTDKGVSAAGQVVSLKV---WLIDDILEKINSHLPSH 177 >gi|224035593|gb|ACN36872.1| unknown [Zea mays] Length = 199 Score = 48.3 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 141 NMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGN------LIEIRVVARSFL 194 + A++ + + S+ R I F +++ L + + +FL Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFL 60 Query: 195 HTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYF 241 Q+R V L L+G G + + ++ L RK +AP L Sbjct: 61 WHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLIL 109 >gi|224082524|ref|XP_002306728.1| predicted protein [Populus trichocarpa] gi|222856177|gb|EEE93724.1| predicted protein [Populus trichocarpa] Length = 162 Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + + ++ D+ L I++ +FL Q+ V L ++G G Sbjct: 28 FMGEHDFRNLCKTDAVKCRIVGDMFKGHQLCAIKIKGSAFLLHQVCCMVAVLLMIGQGLE 87 Query: 214 TSTDLEKALQAQ--DRKECGPLAPPEGLYFDSV 244 + ++ L + RK +AP L V Sbjct: 88 SPDLIDALLDTRRTPRKPQYLMAPEIPLVLLPV 120 >gi|145606084|ref|XP_370178.2| hypothetical protein MGG_06675 [Magnaporthe oryzae 70-15] gi|145013810|gb|EDJ98451.1| hypothetical protein MGG_06675 [Magnaporthe oryzae 70-15] Length = 694 Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 17/85 (20%) Query: 2 IRY-CMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAIFL---VTGEI-----------VV 44 RY + + Y G Y G + Q +G +I+ + KA+ + + Sbjct: 165 TRYIALKLAYLGKNYNGLEYQPSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 224 Query: 45 VHGAGRTDSGVHALRQVAHFDLVRE 69 GRTD GV A QV + Sbjct: 225 YSKCGRTDRGVSAFGQVVALRVKSN 249 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 5/180 (2%) Query: 72 PVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAW 131 + + + + S + YL R+A E + Sbjct: 344 HSCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDF 403 Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF---DVNSFGNLIEIRV 188 +D + L+ D + + V Sbjct: 404 RNFCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHV 463 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 +FL QIR + L LVG + + + L + K P+A L Y Sbjct: 464 RGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCLY 523 >gi|302834750|ref|XP_002948937.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f. nagariensis] gi|300265682|gb|EFJ49872.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f. nagariensis] Length = 669 Score = 48.3 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 14/71 (19%) Query: 1 MIR--YCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV-------TG--EIVVVH 46 M++ + + Y G+ + G Q ++G S+++ +E+A+F G + V Sbjct: 217 MVKRSIALHVGYVGTAFKGLQVNRSGAPDSTVEEVLERAVFEAGLIAESNFGDLKKVKWS 276 Query: 47 GAGRTDSGVHA 57 RTD GVH+ Sbjct: 277 RNSRTDKGVHS 287 Score = 42.9 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + +RV SF+ QIR +G V G L +L Q R P APP L Sbjct: 483 PCVRLRVRGMSFMLHQIRHMIGGALAVARGSLPLPLLRASLAGQAR-VTVPRAPPHTLIL 541 Query: 242 DSVEY 246 + Sbjct: 542 AGCTF 546 >gi|86139957|ref|ZP_01058522.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] gi|85823375|gb|EAQ43585.1| tRNA pseudouridine synthase [Roseobacter sp. MED193] Length = 113 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR 227 + ARS L+ Q+RS VG+L+ VG G WT D++ AL+ +DR Sbjct: 63 RFHLSARSLLYNQVRSIVGTLERVGAGSWTPEDVKTALETRDR 105 >gi|238489663|ref|XP_002376069.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357] gi|220698457|gb|EED54797.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357] Length = 656 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 9/221 (4%) Query: 35 IFLVTGEIVVVHG-AGRTDSGVHALR-----QVAHFDLVREWVPVILCKALNAYLKISDT 88 + V E + V G A +F + P + Sbjct: 294 LNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYKYFFTQPAFSPTPGPLGFTSRANNKAG 353 Query: 89 ISILNLSIVDKQFHA-RFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 S A R +A ++ ++ + + Sbjct: 354 DSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCKLDTSKQIENFERVIYHSDIELLDPRS 413 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 +G F+++ A+ + + + +FL Q+R VG L L Sbjct: 414 SPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPSQVYVFNLRGSAFLWHQVRHMVGILFL 473 Query: 208 VGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 VG G T + L RK +A L + + Sbjct: 474 VGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPLVLWNCVF 514 Score = 37.9 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 26/91 (28%), Gaps = 33/91 (36%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 150 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGPR 208 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVA 62 + E AGRTD GV A QV Sbjct: 209 ELKPYLINWEGCQYSKAGRTDRGVSAFGQVI 239 >gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila] gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila SB210] Length = 484 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 3 RYCMIIEYNGSGYFGWQRQKNG--SSIQGSIEKAI--FLVTGE-------IVVVHGAGRT 51 + + YNG GY G Q QK+ +I+ S+ + + + E RT Sbjct: 12 KVAIFFGYNGKGYHGSQSQKDQNIKTIEKSLFEGLIDSKLISETHMGELKKAGWGRGART 71 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALN 80 D GVHAL + L ++ L Sbjct: 72 DKGVHALCNGVNVKLAISEEYLMRGSPLR 100 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 18/187 (9%) Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA---- 124 + ALN+ L I +++ V ++F R R Y Y + Sbjct: 231 HIDIDKIINALNSNL--PADIRCVSIKQVSRKFDIRTHCKYRVYEYLMPLFMYQKYDDII 288 Query: 125 --------LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFD 176 E+ + D + + R + ++T + Sbjct: 289 AGTPMTEEFEQKTMQRVSTLADKFKGTHNYHNYTRQMKAKDPRCMRYILD--MKTELITN 346 Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + I +V +SF++ QIR +G + ++ + ++ + + LAP Sbjct: 347 PQNGMKFIRFTLVGQSFVYHQIRKMMGMICMMIQEDYPDNFMDSSFFHNVMRIW--LAPA 404 Query: 237 EGLYFDS 243 GL+ + Sbjct: 405 HGLFLNR 411 >gi|119618937|gb|EAW98531.1| pseudouridylate synthase 1, isoform CRA_b [Homo sapiens] Length = 162 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 IRV +SF+ QIR VG + + G + LE++ K P AP GL + Sbjct: 14 FAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSW--GTEKVDVPKAPGLGLVLE 71 Query: 243 SVE---YS 247 V Y+ Sbjct: 72 RVHFEKYN 79 >gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 315 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 10/211 (4%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 + GRTD GV A+ QV ++ N +I + L D + Sbjct: 13 QDYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 72 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 A + + K+L+ E M AA + VG DF F Sbjct: 73 ISAV-----CLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCK 127 Query: 161 IH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + Q ++ RTI + ++ +FL Q+R + L LVG Sbjct: 128 LDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEI 187 Query: 218 LEKA--LQAQDRKECGPLAPPEGLYFDSVEY 246 + + ++ ++ +A L ++ Sbjct: 188 VLRLTDIEKTPQRPVYEMANDIPLLLYDCKF 218 >gi|320038677|gb|EFW20612.1| pseudouridylate synthase 3 [Coccidioides posadasii str. Silveira] Length = 588 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYF 241 V +FL Q+R VG L L+G G + + + L +++ R+ +A L Sbjct: 403 YYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAPLVL 462 Query: 242 DSVEY 246 + Sbjct: 463 WDCVF 467 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 33/89 (37%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVH--------- 46 + Y G Y G+ NG +I+ + KA+ + + V Sbjct: 100 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 158 Query: 47 ---------------GAGRTDSGVHALRQ 60 GRTD GV A Q Sbjct: 159 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQ 187 >gi|303317424|ref|XP_003068714.1| pseudouridylate synthase, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108395|gb|EER26569.1| pseudouridylate synthase, putative [Coccidioides posadasii C735 delta SOWgp] Length = 610 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYF 241 V +FL Q+R VG L L+G G + + + L +++ R+ +A L Sbjct: 399 YYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAPLVL 458 Query: 242 DSVEY 246 + Sbjct: 459 WDCVF 463 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 33/89 (37%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVH--------- 46 + Y G Y G+ NG +I+ + KA+ + + V Sbjct: 96 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 154 Query: 47 ---------------GAGRTDSGVHALRQ 60 GRTD GV A Q Sbjct: 155 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQ 183 >gi|119186911|ref|XP_001244062.1| hypothetical protein CIMG_03503 [Coccidioides immitis RS] Length = 537 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYF 241 V +FL Q+R VG L L+G G + + + L +++ R+ +A L Sbjct: 403 YYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASDAPLVL 462 Query: 242 DSVEY 246 + Sbjct: 463 WDCVF 467 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 33/89 (37%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVH--------- 46 + Y G Y G+ NG +I+ + KA+ + + V Sbjct: 100 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGNR 158 Query: 47 ---------------GAGRTDSGVHALRQ 60 GRTD GV A Q Sbjct: 159 LLRPYSIDWEGCDYSKCGRTDRGVSAFGQ 187 >gi|326474345|gb|EGD98354.1| pseudouridylate synthase [Trichophyton tonsurans CBS 112818] Length = 614 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 406 FTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 465 Query: 244 VEY 246 + Sbjct: 466 CIF 468 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 6/39 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRK 130 >gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892] Length = 614 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 406 FTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 465 Query: 244 VEY 246 + Sbjct: 466 CIF 468 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 6/39 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRK 130 >gi|315055729|ref|XP_003177239.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893] gi|311339085|gb|EFQ98287.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893] Length = 616 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 408 FTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 467 Query: 244 VEY 246 + Sbjct: 468 CIF 470 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 6/39 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNFTEVPTIEEELWKALRK 130 >gi|297606314|ref|NP_001058288.2| Os06g0663100 [Oryza sativa Japonica Group] gi|255677299|dbj|BAF20202.2| Os06g0663100 [Oryza sativa Japonica Group] Length = 156 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 18/26 (69%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQG 29 + +++ Y+G + GWQ+Q +++QG Sbjct: 131 FKIVLSYHGGSFDGWQKQPGLNTVQG 156 >gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517] Length = 614 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 406 FTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 465 Query: 244 VEY 246 + Sbjct: 466 CIF 468 Score = 39.1 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 6/39 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEAPTIEEELWKALRK 130 >gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23] Length = 315 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 10/211 (4%) Query: 41 EIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQ 100 + GRTD GV A+ QV ++ N +I + L D + Sbjct: 13 QNYKFSRCGRTDKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIR 72 Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 A + + K+L+ E M AA + VG DF F Sbjct: 73 ISAV-----CLRPPPNFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFCK 127 Query: 161 IH--CQASSPIRTIDHFDVNS-FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 + Q ++ RTI + ++ +FL Q+R + L LVG Sbjct: 128 LDGSKQITNFKRTIISSKILPLSETFYCFDLIGSAFLWHQVRCMMAILFLVGQSLEVPEI 187 Query: 218 LEKA--LQAQDRKECGPLAPPEGLYFDSVEY 246 + + ++ ++ +A L ++ Sbjct: 188 VLRLTDIEKTPQRPVYEMANDIPLLLYDCKF 218 >gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371] Length = 409 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDS 243 V +FL QIR VG L LVG G + + + L R+ +A L Sbjct: 201 FTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWD 260 Query: 244 VEY 246 + Sbjct: 261 CIF 263 >gi|327351094|gb|EGE79951.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ATCC 18188] Length = 718 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 2/119 (1%) Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 D E + + L + S + I + Sbjct: 455 HVRHIYHADIELLDPKTKPLSYLGQPGFGPLKSEHDRTTANESTWDTSTSNIKIYTITIH 514 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 +FL Q+R L LVG G + + + L + R+ +A L + Sbjct: 515 GSAFLWHQVRHLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 573 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 11/91 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTD 52 M + Y G Y G+ NG +I+ + KA+ + + V G G D Sbjct: 164 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 222 Query: 53 --SGVHALRQVAHFDLVREWVPVILCKALNA 81 GV+A + + Sbjct: 223 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGR 253 >gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera] Length = 419 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 183 LIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 ++ VV +SF+ QIR +G + + LE AL +D P AP GLY D Sbjct: 276 FVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALL-KDVNINVPTAPEVGLYLD 334 Query: 243 SVEYS 247 +S Sbjct: 335 ECFFS 339 Score = 43.7 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 13/109 (11%) Query: 18 WQRQKNGSSIQGSIEKAIF---------LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVR 68 Q+ +I+G +E+A+F + + RTD GV A+ QV Sbjct: 1 MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI 60 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRII 117 + + + LN+ L I I V F+A+ RR Y+Y I Sbjct: 61 DPPGL--VERLNSNL--PPQIRIFGFKRVTASFNAKKFCDRRRYVYLIP 105 >gi|239607141|gb|EEQ84128.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ER-3] Length = 664 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 48/229 (20%), Gaps = 17/229 (7%) Query: 35 IFLVTGEIVVVHGAGR---TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD---- 87 + V E + V D + + +LK Sbjct: 291 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQG 350 Query: 88 ----TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 + YL + ++ + Sbjct: 351 SERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 410 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIR 199 + S RT + + I + +FL Q+R Sbjct: 411 ELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVR 470 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 L LVG G + + + L + R+ +A L + Sbjct: 471 HLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 519 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 11/91 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTD 52 M + Y G Y G+ NG +I+ + KA+ + + V G G D Sbjct: 110 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 168 Query: 53 --SGVHALRQVAHFDLVREWVPVILCKALNA 81 GV+A + + Sbjct: 169 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGR 199 >gi|261201021|ref|XP_002626911.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081] gi|239593983|gb|EEQ76564.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081] Length = 718 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 25/229 (10%), Positives = 48/229 (20%), Gaps = 17/229 (7%) Query: 35 IFLVTGEIVVVHGAGR---TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISD---- 87 + V E + V D + + +LK Sbjct: 345 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQG 404 Query: 88 ----TISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMR 143 + YL + ++ + Sbjct: 405 SERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 464 Query: 144 IAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS----FGNLIEIRVVARSFLHTQIR 199 + S RT + + I + +FL Q+R Sbjct: 465 ELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVR 524 Query: 200 SFVGSLKLVGDGKWTSTDLEKALQAQ--DRKECGPLAPPEGLYFDSVEY 246 L LVG G + + + L + R+ +A L + Sbjct: 525 HLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 573 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 11/91 (12%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTD 52 M + Y G Y G+ NG +I+ + KA+ + + V G G D Sbjct: 164 MRFIALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSED 222 Query: 53 --SGVHALRQVAHFDLVREWVPVILCKALNA 81 GV+A + + Sbjct: 223 DMGGVNAEQDRGDGRAYKIDWTGCQYSKCGR 253 >gi|242781979|ref|XP_002479909.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500] gi|218720056|gb|EED19475.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500] Length = 621 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 9/221 (4%) Query: 35 IFLVTGEIVVVHGAGR---TDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 + V + + D + + +L+ + Sbjct: 258 LNGVLPRDIRILAWCPNPPPDFDARFSCRERQYRYFFTQPAFNPVPGELGFLRSAAHHRG 317 Query: 92 LNLSIVDKQF----HARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQ 147 + + + R + + + ++ + ++ Q Sbjct: 318 IAKKELRDGWLDIEAMREACKQYIGRHDFRNFCRVDTSKQIENFERIIYHASIDLVDPNQ 377 Query: 148 HLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKL 207 H +G F+ + + S + + +FL Q+R V L L Sbjct: 378 HPLGFVGSKEFQPTRNLVDLDNEGNVNEERPSTPLVYTFTLHGSAFLWHQVRHMVAILFL 437 Query: 208 VGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYFDSVEY 246 VG G + + + L RK +A L + Sbjct: 438 VGQGVEDPSIVSELLDVSKHPRKPTYEMASDAPLVLWDCVF 478 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 8/78 (10%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHAL 58 + Y G Y G+ NG +I+ I KA+ ++ + + + Sbjct: 90 IALKFAYLGQRYNGF-EHANGNITPLPTIEEEIWKALRKT--RLIFPTTSSSMELDFNKD 146 Query: 59 RQVAHFDLVREWVPVILC 76 + FDL + C Sbjct: 147 DRARPFDLSWDGCQYSKC 164 >gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni] gi|238665620|emb|CAZ36351.1| pseudouridylate synthase, putative [Schistosoma mansoni] Length = 1304 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 67/231 (29%), Gaps = 48/231 (20%) Query: 31 IEKAIFLVTGEIVVV----------------HGAGRTDSGVHALRQVAHF---------- 64 +E I + + V GRTD GV + QV Sbjct: 938 LENIISKLRKQENDVPKVTKPFIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGV 997 Query: 65 ------------DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + ALN L I +L S V F ARF +RSY Sbjct: 998 GVIEDSGPCISERQDVPDEEMDYVSALNRNL--PRDIRVLAWSPVSPDFSARFMCCKRSY 1055 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTI 172 Y + + D N + + T R I S + Sbjct: 1056 EYYFPESGLDIKSMIDAGNRLVGVHDFRNF---CASRIEKDTVTFIREIFEVVVSDV--- 1109 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + L I + A FL+ QIR + L +VG G + + ++ L Sbjct: 1110 --DSCDHHSKLCRISISASGFLYHQIRFVMSILFMVGRGYESPSVVDDMLD 1158 >gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624] Length = 613 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-AQD-RKECGPLAPPEGLYF 241 + +FL Q+R V L LVG G + + + L +++ RK +A L Sbjct: 409 YVFSLQGSAFLWHQVRHMVSVLFLVGQGLEKPSIVSELLDVSKNPRKPSYEMASDAPLVL 468 Query: 242 DSVEY 246 + Sbjct: 469 WDCIF 473 Score = 40.3 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 49/232 (21%), Gaps = 36/232 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G NG +I+ + KA+ Sbjct: 110 IALKFAYLGQRYNGL-EHANGNVTPLPTIEEELWKALRKTRLIFPTGATADDMREFQEPR 168 Query: 38 ------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISI 91 + E AGRTD GV A QV + KA A + Sbjct: 169 ALKPYALNWEGCEYSKAGRTDRGVSAFGQVVGIRVRSARPKK---KAAVADPGADTPMQD 225 Query: 92 LNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 V + + I + E R + Sbjct: 226 GGEGNVTADRSVDDNWDDIADELPYINLLNRVLPEDIRVLAWCPHPPEGFDARFSCRERQ 285 Query: 152 RHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVG 203 F T + D + + R FVG Sbjct: 286 YKYFFTQPAFSPTPGPGGFAPRANDKAGSVPKYREGWLDIEAMREAARMFVG 337 >gi|281206578|gb|EFA80764.1| hypothetical protein PPL_06350 [Polysphondylium pallidum PN500] Length = 624 Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 19/130 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFL---VTGEI------VVVHGAGRTDSG 54 ++ Y G+GY G + Q +G ++++ ++E+A+F + + + RTD G Sbjct: 187 ALLFAYVGTGYHGLEYQISGYNALENTLEQALFKAGLILPSNLGDLDRIRWSRSSRTDKG 246 Query: 55 VHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSIVDKQFHARFSA 107 VH+L + L E + +N L + IL L+ + F R Sbjct: 247 VHSLSTLLAGCLEIEDGSGYYPEKVAVLIEKINRGL--PPNLRILALAPTSRSFDPRRQC 304 Query: 108 IRRSYLYRII 117 R+Y Y + Sbjct: 305 TSRTYHYVLP 314 Score = 43.3 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 1/112 (0%) Query: 132 LIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVAR 191 K + + V + S +S + V Sbjct: 404 QTWKETPVDRDAEMLAYRVNSTNVRRINSFKVVETSFKTKNVDGGGGGDEEWVRFEVEGA 463 Query: 192 SFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 SF+ QIR +G + +G+G LE AL++ P+APP LY Sbjct: 464 SFIQYQIRKMIGFVLAIGNGYCDRRMLELALKSP-FSIRSPVAPPNPLYLFD 514 >gi|331231235|ref|XP_003328281.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307271|gb|EFP83862.1| pseudouridine synthase 3 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 650 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 84/338 (24%), Gaps = 101/338 (29%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFL--------------------- 37 + ++I Y G + G Q + S+++G + +A+ + Sbjct: 162 RKIALMISYQGELHGGLAWQPDVTRLSTVEGELFRALLVARLVEGAGEFEEQEEEDSERW 221 Query: 38 ---VTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE------------------------- 69 V AGRTD+GV QV + + Sbjct: 222 RGLVDLNKWGYSRAGRTDAGVSGAGQVVSLWVRSQLRSVPAPFGFLPPKKTDSDDGSEEE 281 Query: 70 -----------------WVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY 112 + +N+ L S + + D A Y Sbjct: 282 PRGESAGPKQEQEQEEAEEELQYHTIINSILPNSVRVLAWSPVHHDFDARFSCQARHYKY 341 Query: 113 LYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI----------- 161 + + L+ L E+ + FR Sbjct: 342 FFSLYESPQAPGLDIEAMNRAADRLIGEHDFRNFCKIDPSKQLAHFRRKILSAEIKPVLD 401 Query: 162 -------------------HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 + + L + +V +FL+ +R V Sbjct: 402 PHHHHLLLLQQQQLSGPSGSSEKHPHPQIYPDALAPETNPLFVLDLVGTAFLYNMVRHIV 461 Query: 203 GSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEG 238 L L+G GK + +++ L + ++ A EG Sbjct: 462 SVLFLIGSGKEEISVIDRLLYTEPNEQPSIITTASEEG 499 >gi|255088754|ref|XP_002506299.1| predicted protein [Micromonas sp. RCC299] gi|226521571|gb|ACO67557.1| predicted protein [Micromonas sp. RCC299] Length = 601 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 1/70 (1%) Query: 177 VNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPP 236 + + V SF+ QIR + + G + + +L R P+AP Sbjct: 394 HKDAPPFVRVTVNGDSFMLYQIRKMIATAVAAAIGHFPLELIPASLTRPAR-IATPIAPA 452 Query: 237 EGLYFDSVEY 246 LY E+ Sbjct: 453 STLYLVDAEF 462 Score = 38.7 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 21/130 (16%) Query: 4 YCMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLV-----------TGEIVVVHGAG 49 +++ Y G+GY G GS++ +E A+F + + + Sbjct: 113 VALLMGYVGAGYSGNTTNASLPRGSTVDDVLEDALFDAGCILLSNYRSRSLSRLKWSRSS 172 Query: 50 RTDSGVHALRQVAHFD-------LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFH 102 RTD GV +L V + + +N +L + + Q Sbjct: 173 RTDKGVSSLATVVSARLEVDVGVWENDPEGTRIAADINRHLPNHVRVFGAYSTPKSFQAR 232 Query: 103 ARFSAIRRSY 112 Y Sbjct: 233 RACVRRTYDY 242 >gi|221121945|ref|XP_002160541.1| PREDICTED: similar to tRNA pseudouridine synthase A [Hydra magnipapillata] Length = 138 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + QIR +G + V G +EK+ K P AP GL V Y+ Sbjct: 1 MIHQIRKMIGLVIAVCRGHCPEDTIEKSWLQA--KADIPKAPGLGLLLCKVFYN 52 >gi|154320712|ref|XP_001559672.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10] gi|150853517|gb|EDN28709.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10] Length = 575 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 19/78 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL----------------VTGEIVV 44 + + Y G Y G++ + ++I+ + +A+ V E Sbjct: 60 IALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEGCE 119 Query: 45 VHGAGRTDSGVHALRQVA 62 GRTD GV A QV Sbjct: 120 YSKCGRTDKGVSAFGQVI 137 Score = 41.4 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 54/223 (24%), Gaps = 40/223 (17%) Query: 63 HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAP 122 D + + LN L I S F ARFS R Y Y Sbjct: 214 SLDFDHITDEIPYPQVLNRLLPPDIRILAWCPSP-PIDFSARFSCRERRYRYFFTQPAFS 272 Query: 123 LALEKGRA-----WLIPKSLDCENMRIA---AQHLVGRHDFTTFRSIHCQASSPIRTIDH 174 + + LD + MR A + L +F + R Sbjct: 273 PIPSQLEHGTSASKMKDGWLDIDAMREAARLYEGLHDFRNFCKVDPGKQITNFERRIFYA 332 Query: 175 FDVNSFGN-----------------------------LIEIRVVARSFLHTQIRSFVGSL 205 + + +FL Q+R V L Sbjct: 333 NIEEVDDYTSSLAYVNGGSFLDESVRSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAIL 392 Query: 206 KLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 LVG G + + + L + + +A L + Sbjct: 393 FLVGQGLEKPSVVTELLDVEKNPGRPTYEMATDTPLVLWDCIF 435 >gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980] gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980 UF-70] Length = 592 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 19/78 (24%) Query: 4 YCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFL----------------VTGEIVV 44 + + Y G Y G++ + ++I+ + +A+ V E Sbjct: 60 IALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPMAPGEVNWEGCE 119 Query: 45 VHGAGRTDSGVHALRQVA 62 GRTD GV A QV Sbjct: 120 YSKCGRTDKGVSAFGQVI 137 Score = 42.9 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 59/238 (24%), Gaps = 43/238 (18%) Query: 51 TDSGVHALRQVA---HFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSA 107 TDSG L D + + LN L I S F ARFS Sbjct: 199 TDSGAFVLSDPHIQESLDFNHITDEIPYPQVLNRLLPPDIRILAWCPSP-PVDFSARFSC 257 Query: 108 IRRSYLYRIITRQAPLALEKGRA-----WLIPKSLDCENMRIA---AQHLVGRHDFTTFR 159 R Y Y + + LD E MR A + L +F Sbjct: 258 RERRYRYFFTQPAFSPIPSQLEHGASASKMKDGWLDIEAMREAAKLYEGLHDFRNFCKVD 317 Query: 160 SIHCQASSPIRTIDHFDVNSFGN-----------------------------LIEIRVVA 190 + R + + Sbjct: 318 PGKQITNFERRIFYANIEEVKDYTSSLAYVNGDSFLDDSIRSKIDGESKAPKVYTFDLHG 377 Query: 191 RSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDR--KECGPLAPPEGLYFDSVEY 246 +FL Q+R V L LVG G + + + L + + +A L + Sbjct: 378 SAFLWHQVRHMVAILFLVGQGLEKPSVVSELLDVEKNPGRPAYEMATDTPLVLWDCIF 435 >gi|300175206|emb|CBK20517.2| unnamed protein product [Blastocystis hominis] Length = 282 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 2/103 (1%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 C ++ + + + Q ++ G I + + +SF+ QI Sbjct: 171 CMSLFVGTHNFHNYTVGKSSADSSAQRHILGISVSDPIRIHDGLYIRVCLEGQSFMLHQI 230 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 R +G V G+ + + +L P+AP GL+ Sbjct: 231 RKMIGIAIEVARGRCSLHTVNSSLSRG--TMFTPMAPSTGLFL 271 >gi|269121656|ref|YP_003309833.1| Pseudouridylate synthase-like protein [Sebaldella termitidis ATCC 33386] gi|268615534|gb|ACZ09902.1| Pseudouridylate synthase-like protein [Sebaldella termitidis ATCC 33386] Length = 276 Score = 45.6 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 55/249 (22%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVV-----VHGAGRTDSGVHAL 58 Y I Y+G+ + + K+ +S++G + E + + AGRTD V A Sbjct: 14 YLFFIRYDGTKFDSFDENKDKTSVKGE----FKKLLDENNISYYKGIQQAGRTDKDVSAE 69 Query: 59 RQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIIT 118 + + + +E L + S + I ++ +R Y+YR Sbjct: 70 ENILYINTKQE-------LKLENFRNSSVILEIFDIKKTLPYLELPKLIEKRHYIYRYPK 122 Query: 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVN 178 + ++E+ + + + IR ++ Sbjct: 123 DRIKSSIEEI-------------DKKCRELSGKHDVSAFTTKKGRELKEKIR-----ELA 164 Query: 179 SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEG 238 + E+ SF+ Q+R G + GK L+ + Sbjct: 165 VYYENQELHFTGSSFMPQQVRIMSGYIL---TGKKQP------LEGRY------------ 203 Query: 239 LYFDSVEYS 247 L + + +S Sbjct: 204 LTLEKIIFS 212 >gi|68072745|ref|XP_678286.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56498704|emb|CAH97255.1| conserved hypothetical protein [Plasmodium berghei] Length = 438 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 55/193 (28%), Gaps = 63/193 (32%) Query: 2 IRYCMIIEYNGSGYFGW------------QRQ--KNGS---------------------- 25 ++I+Y+G+ Y GW KN Sbjct: 87 TNIILVIDYDGTNYKGWTGIENYSSVYLNAIHGFKNVKKSDIYNGNVLEKVDDNDINCNN 146 Query: 26 ------SIQGSIEKAIFLVTG---------------EIVVVHGAGRTDSGVHALRQVAHF 64 ++Q I + + G + G RTD GVHA V + Sbjct: 147 LKKKYETVQNCILNCLLKIHGYGDNPNITNYKENNLKPFEFIGVSRTDKGVHAKEYVCQY 206 Query: 65 DL-----VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119 + +LN L + + + + F+ R + + Y Y I R Sbjct: 207 ISYKKFPPFNGNLEKIKLSLNRLLNKDIKVLGIFNAPFN-NFNVRHHNLGKIYTYNIDFR 265 Query: 120 QAPLALEKGRAWL 132 + LE+ +W Sbjct: 266 KPSQPLERNFSWQ 278 >gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49] Length = 370 Score = 45.3 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 116 IITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR---TI 172 + + + + LD + M AAQ VG H+F F + + R T Sbjct: 41 TFDARFDCTGRVYKYFFHSEGLDLQRMHQAAQRFVGEHNFRYFCKLDPRQYRNPRRTLTS 100 Query: 173 DHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + G + RSFL Q+R + +L VG G + + L+ Sbjct: 101 FAVESAGDGVCAVATIAGRSFLWHQVRFMMAALLKVGRGSCDESYIVDLLK 151 >gi|170585848|ref|XP_001897694.1| hypothetical protein [Brugia malayi] gi|158595001|gb|EDP33578.1| conserved hypothetical protein [Brugia malayi] Length = 140 Score = 44.9 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPP 236 +LIEI V++RSFL +QIR + ++ G+ L L + APP Sbjct: 43 FSLIEISVISRSFLRSQIRHMIRTIVEHAYGRLQWERLIWFLNNPNPENFHNSGMVAAPP 102 Query: 237 EGLYFDSVEY 246 +GL+ + V Y Sbjct: 103 QGLFLEDVVY 112 >gi|312066615|ref|XP_003136354.1| hypothetical protein LOAG_00766 [Loa loa] gi|307768481|gb|EFO27715.1| hypothetical protein LOAG_00766 [Loa loa] Length = 141 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD----RKECGPLAPPEGLYF 241 I V++RSFL +QIR V S+ G+ L L + APP+GL+ Sbjct: 48 INVISRSFLRSQIRHMVRSIVEHAYGRLQRERLVWLLNNPNPENFHHFGMVAAPPQGLFL 107 Query: 242 DSVEY 246 + V Y Sbjct: 108 EDVVY 112 >gi|261190138|ref|XP_002621479.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081] gi|239591307|gb|EEQ73888.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081] Length = 605 Score = 44.9 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 24/243 (9%) Query: 19 QRQKNGSS---------IQGSIEKAIFLVTGEIVVVHGAGRTDSG-VHALRQVAHFDLVR 68 QRQ ++ IQ +E+ + VT V ++D+G V + D Sbjct: 268 QRQAEVATYWKEVDEKYIQPILER-LPEVTRNRVKRALIVKSDTGPVDSS------DSQG 320 Query: 69 EWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKG 128 E + +A +I + + + R A A Sbjct: 321 EQKLNPSNEGDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 380 Query: 129 RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQA-SSPIRTIDHFDVNSFGNLIEIR 187 + + + D M + ++ +FR + + + + + ++ Sbjct: 381 KERMDRIN-DALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLK 439 Query: 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE-- 245 V +SF+ QIR V + LV + + + D K P AP GL + Sbjct: 440 VHGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYE--DHKIAIPKAPGLGLLLERPIFD 497 Query: 246 -YS 247 Y+ Sbjct: 498 SYN 500 Score = 39.1 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 13/121 (10%) Query: 14 GYFGWQRQKNGSSIQGSIEK------AIFLVT---GEIVVVHGAGRTDSGVHALRQVAHF 64 GY G R +I+G + AI + + RTD GVHA V Sbjct: 128 GYSGIYRSPTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSL 187 Query: 65 DLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLA 124 L+ E + + +N L S I + + I +K F + R Y Y I T Sbjct: 188 KLIVE--DSDIVQKINEQL--SPQIRVWGIEITNKSFSSYHLCDSRIYEYLIPTHCFLPP 243 Query: 125 L 125 Sbjct: 244 H 244 >gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum] Length = 604 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%) Query: 149 LVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLV 208 + + + + ++ + SF+ QIR VG + V Sbjct: 406 MNFYKTNVKNCRKIHSFTIGETFLVESNDQQQEEWVKFMIEGESFIQYQIRKMVGFVLAV 465 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD---------SVEYS 247 G LE AL+ P+APP+ LY V Y+ Sbjct: 466 CHGLVDVKILEIALKGP-FSINSPIAPPDTLYLYDCRVNERKSDVLYN 512 >gi|302857489|ref|XP_002959885.1| hypothetical protein VOLCADRAFT_101403 [Volvox carteri f. nagariensis] gi|300254031|gb|EFJ39049.1| hypothetical protein VOLCADRAFT_101403 [Volvox carteri f. nagariensis] Length = 266 Score = 44.9 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIE 32 Y + + Y G + GW Q ++QG++E Sbjct: 226 YKVTVSYFGPAFEGWAFQPGRRTLQGALE 254 >gi|302837035|ref|XP_002950077.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f. nagariensis] gi|300264550|gb|EFJ48745.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f. nagariensis] Length = 738 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 8/98 (8%) Query: 156 TTFRSIHCQASSPIRTIDHFDVNSFGNLIE-------IRVVARSFLHTQIRSFVGSLKLV 208 + R I HF L+E + V +SF+ IR +G V Sbjct: 524 MEMDPRDRVTQTYYRRIHHFTAADPRPLVEGGTPCLLLEVRGQSFMLHHIRHMIGGAVAV 583 Query: 209 GDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G L +L+ R P APP L + Sbjct: 584 ALGLMPKDVLLGSLEPPAR-VAIPRAPPHTLLLADCTF 620 >gi|258563566|ref|XP_002582528.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237908035|gb|EEP82436.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 615 Score = 44.5 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ--AQDRKECGPLAPPEGLYF 241 V +FL Q+R V L L+G G + + + L R+ +A L Sbjct: 406 YYFSVHGSAFLWHQVRHMVAVLFLIGQGLEPPSIVSQLLDVSTNPRRPTYDIASDAPLVL 465 Query: 242 DSVEY 246 + Sbjct: 466 WDCVF 470 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 34/90 (37%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL--------------------- 37 + Y G Y G+ NG +I+ + KA+ Sbjct: 98 IALKFAYLGQRYNGY-EHANGNITPLPTIEEELWKALRKARLIFPHIVENSENVDESGSR 156 Query: 38 -------VTGEIVVVHGAGRTDSGVHALRQ 60 ++ E GRTD GV A Q Sbjct: 157 SLSRPYSISWEGCDYSKCGRTDRGVSAFGQ 186 >gi|225560228|gb|EEH08510.1| pseudouridylate synthase [Ajellomyces capsulatus G186AR] Length = 625 Score = 44.5 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 29/229 (12%), Positives = 60/229 (26%), Gaps = 18/229 (7%) Query: 35 IFLVTGEIVVVHGAGR---TDSGVHALRQ---VAHFDLVREWVPVILCKALNAYLKISDT 88 + V E + V D + +F + P + + Sbjct: 265 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENC 324 Query: 89 ISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGR---------AWLIPKSLDC 139 + + + ++QF + I + + D Sbjct: 325 LWEGSGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 384 Query: 140 ENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIR 199 E + + L F + + D +S + I + +FL Q+R Sbjct: 385 ELLDPKTKPL-SYLRQHEFTTFDTENDKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVR 443 Query: 200 SFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 L LVG G + + + L + R+ +A L + Sbjct: 444 HLAAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 492 Score = 39.9 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV 38 + Y G Y G+ NG +I+ + KA+ Sbjct: 92 IALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKA 130 >gi|125583196|gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group] Length = 518 Score = 44.5 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + I VV +SF+ QIR +G V + +D P AP GLY Sbjct: 364 DFIRCEVVGQSFMLHQIRKMIGLAVAVMRN-CAPESIYDVAFRKDVNLNVPTAPEVGLYL 422 Query: 242 DSV---EYS 247 D Y+ Sbjct: 423 DECMFTSYN 431 >gi|225678874|gb|EEH17158.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb03] Length = 547 Score = 44.5 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 6/114 (5%) Query: 138 DCENMRIAAQHLVGRHDFTTFRSIHCQASSP-IRTIDHFDVNSFGNLIEIRVVARSFLHT 196 D ++ + ++ +FR + + + + + ++V +SF+ Sbjct: 331 DALDLYVGTRNFHNYTIQKSFREASAKRHIKSFKISSDPIIINGTEWLSLKVHGQSFMMH 390 Query: 197 QIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE---YS 247 QIR V + +V + + D+K P AP GL + Y+ Sbjct: 391 QIRKMVAMVAMVVRCGCDIQRIPE--TYGDQKIAIPKAPGLGLLLERPIFDSYN 442 >gi|303288467|ref|XP_003063522.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455354|gb|EEH52658.1| predicted protein [Micromonas pusilla CCMP1545] Length = 419 Score = 44.1 bits (102), Expect = 0.015, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 + + V SF+ QIR + + V G + L R P+AP LY Sbjct: 217 PFVRVVVAGDSFVLYQIRKMIATAVGVALGWIPREFIPVTLARPAR-AATPIAPASTLYL 275 Query: 242 DSVEYS 247 E+S Sbjct: 276 REAEFS 281 >gi|320164169|gb|EFW41068.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 311 Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 65/216 (30%), Gaps = 16/216 (7%) Query: 31 IEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTIS 90 IE+ I + HG R V R + + A Y ++ Sbjct: 8 IER-INEQLPHDIRAHGYAR----VAGSFNARTACTSRVYSYTLPTFAFAPYKSMTWD-Y 61 Query: 91 ILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLV 150 ++ + + K + + + R D I + L Sbjct: 62 RIDAATLQKVRDTFAKYTGSHRFHNYTIKVRINDAQAMRVMQSCTVNDPLLTPIDREWLA 121 Query: 151 GRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGD 210 + ++ D + ++ + + +SF++ QIR VG + + Sbjct: 122 ANPE--------PVSADQPAPEGCPDHLTHLEMVTMVIEGQSFMYNQIRKMVGMVIAIVR 173 Query: 211 GKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 G+ + + + + P AP GL + V++ Sbjct: 174 GQSETFSIPNSFTLP--QMAVPRAPGLGLALERVKF 207 >gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum] Length = 568 Score = 44.1 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 ++ + SF+ QIR +G + + +GK LE AL + P+APP LY Sbjct: 391 QEWVKFVIEGESFIQYQIRKMMGFVLAITNGKTDLKTLELALHSP-FSIHAPIAPPNPLY 449 Query: 241 FDSVEY 246 + Sbjct: 450 LFDCAF 455 Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 23/166 (13%) Query: 6 MIIEYNGSGYFG----WQRQKNGSSIQGSIEKAIF-------LVTGEIVVVH--GAGRTD 52 M+ Y G+GY G Q + +++ +E+A+F G+ ++ + RTD Sbjct: 134 MLFAYVGTGYHGLEFHMTDQ-DYPTLENCLERALFLSGMILPTNFGDPSRLNWRRSSRTD 192 Query: 53 SGVHALRQVAHFDLVREWVPVILCKA-------LNAYLKISDTISILNLSIVDKQFHARF 105 GVH++ + +L + ++ + +N+ L + I + ++ R Sbjct: 193 KGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNLPDALRIISMEMTKKSFD--PRR 250 Query: 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVG 151 I R+Y Y + + I + N L Sbjct: 251 QGIARTYHYVLPKKYLGDRYTLDEINQIILPMFIGNFSYHNFTLKR 296 >gi|56758144|gb|AAW27212.1| unknown [Schistosoma japonicum] Length = 223 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 2/105 (1%) Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 I+ Q C + IR++ +SF+ Q+R + Sbjct: 3 NISTQIYYHFTSGRLPTDKSCYRHIKSVECIPTFLLGEHEYTVIRIIGQSFMLHQVRKMI 62 Query: 203 GSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 G + + G T D+ + ++R P AP GL + V++S Sbjct: 63 GLVLGILRGYAT-EDVFDIVFCKER-VDIPKAPGLGLMLNQVDFS 105 >gi|312090526|ref|XP_003146648.1| tRNA pseudouridine synthase A [Loa loa] gi|307758189|gb|EFO17423.1| tRNA pseudouridine synthase A [Loa loa] Length = 238 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I + V +SF+ QIR +G G T+LE +++ + P AP GL Sbjct: 23 MVEFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGKTELENTFRSE--RMDVPKAPGLGL 80 Query: 240 YFDSVEY 246 D V Y Sbjct: 81 VLDKVHY 87 >gi|300175270|emb|CBK20581.2| unnamed protein product [Blastocystis hominis] Length = 310 Score = 44.1 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 57/247 (23%), Gaps = 47/247 (19%) Query: 15 YFGWQRQKNGSSIQGSIEKAIFLVTG---------EIVVVHGAGRTDSGVHALRQVAH-- 63 Y G Q S++ + +F++ RTD GV A V Sbjct: 12 YSGMQVNDTRQSVEDKLVDCLFMLDKIEPWNVIKSSKFDWERCSRTDKGVSARSIVVSGK 71 Query: 64 -FDLVREWVPVILC----KALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLY---- 114 D E+ + + LN L + H SY Sbjct: 72 LMDYDDEFDSSMQNQLAVEQLNQLLPEDIRVFSYTRVSKSFNPHLNTHTRTYSYYLPLDQ 131 Query: 115 ----------------RIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF 158 I T + AL K+ Sbjct: 132 YQSSHYAPSRIIELGVHIDTAKFQKALSVFLGTHSMKNYSGSIQYSLLSCSCDYFVVIEI 191 Query: 159 RSIHCQASSPIRTIDHFDVNSFG-----------NLIEIRVVARSFLHTQIRSFVGSLKL 207 R P H S + + + SFL+ QIR +G Sbjct: 192 RISVNSTCEPCSCYFHLCHFSNHIAATPLTIGNERYLHVLLNGNSFLYHQIRKMIGGAVA 251 Query: 208 VGDGKWT 214 V G W+ Sbjct: 252 VSCGSWS 258 >gi|294897084|ref|XP_002775815.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983] gi|239882168|gb|EER07631.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983] Length = 708 Score = 43.7 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 162 HCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWT-STDLEK 220 C ++ T ++ + + + V + FL+ QIR +G+ G + + ++ Sbjct: 354 QCNSAIHSFTATPIEMGNGEKWVRVDVRGQFFLYNQIRLMIGAGIAYARGVFPSISCIQF 413 Query: 221 ALQAQDRKECGPLAPPEGLYFD 242 A+ + K PLAP GL Sbjct: 414 AIDT-NYKFHSPLAPACGLILH 434 >gi|124783935|gb|ABN14957.1| tRNA pseudouridine synthase A [Taenia asiatica] Length = 123 Score = 43.7 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGV 55 +++ Y+G G+ G QR + +I+G + A+ ++ A +TD V Sbjct: 60 AILVVYSGVGFCGMQRNEGFRTIEGELMMALCNAGYILEEHMKNPSMICFQRASKTDKNV 119 Query: 56 HA 57 A Sbjct: 120 SA 121 >gi|71746940|ref|XP_822525.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70832193|gb|EAN77697.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 401 Score = 43.7 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFD 242 I + +SFL QIR +G++ + L + + P+ P GL+ Sbjct: 266 RIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANGLFLT 323 >gi|325090241|gb|EGC43551.1| pseudouridylate synthase [Ajellomyces capsulatus H88] Length = 626 Score = 43.3 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 3/119 (2%) Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 D E + + L F + + D +S + I + Sbjct: 376 HVRHIYHADIELLDPKTKPL-SYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIH 434 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+R L LVG G + + + L + R+ +A L + Sbjct: 435 GSAFLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493 Score = 39.9 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV 38 + Y G Y G+ NG +I+ + KA+ Sbjct: 92 IALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKA 130 >gi|240278982|gb|EER42488.1| pseudouridylate synthase [Ajellomyces capsulatus H143] Length = 626 Score = 43.3 bits (100), Expect = 0.026, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 3/119 (2%) Query: 130 AWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVV 189 D E + + L F + + D +S + I + Sbjct: 376 HVRHIYHADIELLDPKTKPL-SYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIH 434 Query: 190 ARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPEGLYFDSVEY 246 +FL Q+R L LVG G + + + L + R+ +A L + Sbjct: 435 GSAFLWHQVRHLAAILFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493 Score = 39.9 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV 38 + Y G Y G+ NG +I+ + KA+ Sbjct: 92 IALKFAYLGQRYNGY-EHANGNTTPLPTIEEELWKALRKA 130 >gi|224002789|ref|XP_002291066.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972842|gb|EED91173.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 798 Score = 43.3 bits (100), Expect = 0.028, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC-GPLAPPEG 238 + + FLH Q R +G L + G S +E + P AP G Sbjct: 407 NRPFLVFSLTGDVFLHEQARRVIGLLIAICRGVIDSEIIECMFDEEYANLVPAPPAPSCG 466 Query: 239 LY 240 L Sbjct: 467 LV 468 >gi|300123845|emb|CBK25116.2| unnamed protein product [Blastocystis hominis] Length = 282 Score = 43.3 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 2/103 (1%) Query: 139 CENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQI 198 C ++ + + + Q ++ G I + + +SF+ QI Sbjct: 171 CMSLFVGTHNFHNYTVGKSSADSSAQRHILGISVSDPIRIHDGLYIRVCLEGQSFMLHQI 230 Query: 199 RSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 R +G V G+ + +L P+AP GL+ Sbjct: 231 RKMIGIAIEVARGRCSLHTANSSLSRG--TMFTPMAPSTGLFL 271 >gi|226484742|emb|CAX74280.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum] Length = 171 Score = 43.3 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 4 YCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLV----TGEIVVVHGAGRTDSGVHAL 58 + + Y G Y G Q ++ + A+ GRTD GV + Sbjct: 71 IALKLSYLGWQYCGLVPQGCYTLTVMDRLLDALEKAKLIENRNECSFSVCGRTDKGVSGI 130 Query: 59 RQ 60 Q Sbjct: 131 CQ 132 >gi|212721194|ref|NP_001132024.1| hypothetical protein LOC100193430 [Zea mays] gi|194693226|gb|ACF80697.1| unknown [Zea mays] Length = 369 Score = 43.3 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%) Query: 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 + + +S +E+ + SF+ QIR VG+ V G +E Sbjct: 194 NASHFRDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRKMVGTAVTVKRGLLPRDIIE 253 Query: 220 KALQAQDRKECGPLAPPEGLYFDS 243 +L R P+AP E L Sbjct: 254 LSLAKFSRIVL-PIAPSEVLVLKD 276 >gi|226288982|gb|EEH44494.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18] Length = 574 Score = 42.9 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPE 237 + I + +FL Q+R L L+G G + + + L + R+ +A Sbjct: 364 NMKIYSITIHGSAFLWHQVRHLAAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDA 423 Query: 238 GLYFDSVEY 246 L + Sbjct: 424 PLVLWDCIF 432 Score = 39.1 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL---VTGEIVVVHGAGRTDSGV 55 + Y G Y G+ NG +I+ + KA+ + + V G + + V Sbjct: 95 IALKFAYLGQRYGGY-EHSNGNITPLPTIEEELWKALRKARLIFPQSVEGDGQAQVERAV 153 Query: 56 HA 57 Sbjct: 154 AT 155 >gi|295671354|ref|XP_002796224.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] gi|226284357|gb|EEH39923.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb01] Length = 700 Score = 42.9 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPE 237 + I + +FL Q+R L L+G G + + + L + R+ +A Sbjct: 487 NMKIYSITIHGSAFLWHQVRHLAAILFLIGQGLERPSIIPELLDFEKNPRRPTYEIASDA 546 Query: 238 GLYFDSVEY 246 L + Sbjct: 547 PLVLWDCIF 555 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV 38 + Y G Y G+ NG +I+ + KA+ Sbjct: 151 IALKFAYLGQRYGGY-EHSNGNITPLPTIEEELWKALRKA 189 >gi|225681814|gb|EEH20098.1| pseudouridylate synthase [Paracoccidioides brasiliensis Pb03] Length = 641 Score = 42.9 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECGPLAPPE 237 + I + +FL Q+R L L+G G + + + L + R+ +A Sbjct: 431 NMKIYSITIHGSAFLWHQVRHLAAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDA 490 Query: 238 GLYFDSVEY 246 L + Sbjct: 491 PLVLWDCIF 499 Score = 37.2 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFLV 38 + Y G Y G+ NG +I+ + KA+ Sbjct: 95 IALKFAYLGQRYGGY-EHSNGNITPLPTIEEELWKALRKA 133 >gi|298705212|emb|CBJ28643.1| pseudouridylate synthase 3 [Ectocarpus siliculosus] Length = 472 Score = 42.6 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%) Query: 4 YCMIIEYNGSGYFGWQRQKNGS--SIQGSIEKAIFLVTGEIVVVHG-----AGRTDSGVH 56 + + Y G GY G+ Q G+ +I+ + +A+ + G GRTD GV Sbjct: 107 VAVQLMYEGGGYAGFCSQSEGNEETIEKHLFRALTTTKLVETITTGDNYSRCGRTDRGVS 166 Query: 57 ALRQVAHFDLVREWVPV 73 AL V + ++ Sbjct: 167 ALGNVITVSMRSKFPKH 183 >gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii] gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii] Length = 437 Score = 42.6 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 44/175 (25%), Gaps = 2/175 (1%) Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 E ++ L L + + + R+ + E Sbjct: 180 TCEIKQLLEQFRLQLKLFEGEHPFHNYTIRRNYGKPKQQDLNWRTRTPIAADNSSSSEEE 239 Query: 127 KGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEI 186 L + A L + + + + + Sbjct: 240 DEDGDADEPRLRVQQKPSPAYWLQELDPTDRI-TSQHYRKIIRCSCGDIEKFGDTLALRV 298 Query: 187 RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 V SF+ QIR +G+ V ++ +L R P+AP EGL Sbjct: 299 SVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQMSLCRHSRIVL-PIAPCEGLTL 352 Score = 39.1 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 27/145 (18%) Query: 2 IRYCMIIEYNGSGYFG---------WQRQKNGSSIQGSIEKAIFLVTGE---------IV 43 + M I Y G+GY G + ++I+ ++KAI+ G V Sbjct: 30 KKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKV 89 Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSI 96 + RTD GVH+L V + +N +L I + + Sbjct: 90 GWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADRINRHL--PQCIRVFGVVP 147 Query: 97 VDKQFHARFSAIRRSYLYRIITRQA 121 V K F R + RSY Y + Sbjct: 148 VSKTFRPRMACSERSYDYFLPALCV 172 >gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus] Length = 361 Score = 42.2 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 8/175 (4%) Query: 75 LCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIP 134 LN L I +L + V+ F ARFS + R+Y Y +A A Sbjct: 41 YTHILNRVL--PADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYV 98 Query: 135 KSLDCEN-MRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 + D N ++ + V T + + + + ++F Sbjct: 99 GTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEV---IGQAF 155 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD--RKECGPLAPPEGLYFDSVEY 246 L+ Q+R + L L+G G +++ L Q +K +A L ++ Sbjct: 156 LYHQVRCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKF 210 >gi|207109637|ref|ZP_03243799.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_CA4C1] Length = 93 Score = 42.2 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 + +++ +FL + +R + + K T ++E + P+ GLY Sbjct: 29 HECVVFKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-ANGLY 87 Query: 241 FDSVEY 246 V Y Sbjct: 88 LHRVYY 93 >gi|308448942|ref|XP_003087803.1| hypothetical protein CRE_15245 [Caenorhabditis remanei] gi|308252628|gb|EFO96580.1| hypothetical protein CRE_15245 [Caenorhabditis remanei] Length = 195 Score = 41.8 bits (96), Expect = 0.081, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 7/80 (8%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRS---FVGSLKLVGDGKWTSTDLEKALQAQDRKE- 229 + N + + +VA+SF+ Q+ + L + ++ L Sbjct: 97 YSINNDIYDYYNVTIVAKSFVREQVCRFILMMSCLVNYSYDRIPLATVDWLLNNPISSNF 156 Query: 230 ---CGPLAPPEGLYFDSVEY 246 P+APP+GL+ V Y Sbjct: 157 FDMGIPIAPPQGLFLTDVVY 176 >gi|325115129|emb|CBZ50685.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1140 Score = 41.8 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 176 DVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 D + + I VV FL+ +R VG+L V G+ ++ D+ +AL+ Sbjct: 981 DGHDLPQGLRIDVVGNRFLYKMVRKMVGALVQVALGRLSTEDIRRALE 1028 Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 4/27 (14%), Positives = 11/27 (40%), Gaps = 2/27 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSS 26 +++ Y+G+ + GW + Sbjct: 219 TNLLLLVAYDGTDFSGWAANLSPQDRT 245 >gi|237804283|ref|ZP_04591868.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805862|ref|ZP_04592566.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026270|gb|EGI06326.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026970|gb|EGI07025.1| tRNA pseudouridine synthase A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 38 Score = 41.4 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 20 RQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRT 51 RQ ++Q ++E A+ V V + AGRT Sbjct: 6 RQASGVLTVQETLENALSKVAASPVSLMCAGRT 38 >gi|156084710|ref|XP_001609838.1| RNA pseudouridine synthase A 2 [Babesia bovis T2Bo] gi|154797090|gb|EDO06270.1| RNA pseudouridine synthase A 2, putative [Babesia bovis] Length = 295 Score = 41.4 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 66/212 (31%) Query: 2 IRYCMIIEYNGSGYFGW----------------------QRQKNG-SSIQGSIEKAIFLV 38 M +EY+G Y G+ +QK SI I +A+ ++ Sbjct: 54 TNIVMTVEYDGGEYSGFVGPNHFYNEEKAKMLATVVMPRTKQKGVLKSISNEISRAMAII 113 Query: 39 TG-------------------------------------EIVVVHGAGRTDSGVHAL--- 58 G + + RTD GVHA Sbjct: 114 HGYMPKSRKKKRTNCEPLTTELEENNEDDVHCPDTLPPERRFTLIASSRTDKGVHATETA 173 Query: 59 RQVAHFD--LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRI 116 Q FD + +N L ++ + + FH RF + + Y Y++ Sbjct: 174 CQYLSFDKEPPYNGDIDAIMDKVNRLLPDDIRVTAMIHAP-TLDFHVRFDNLGKHYTYKV 232 Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQH 148 + P E+ W I K N + + Sbjct: 233 DISETPNIFERKYYWQIMKDSQFRNTLMKKYN 264 >gi|108708044|gb|ABF95839.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa Japonica Group] Length = 374 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 +E+ + SF+ QIR VG+ V G + +L R P+AP E L Sbjct: 216 QFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL-PIAPSEVLVL 274 Query: 242 DS 243 Sbjct: 275 RD 276 >gi|302412567|ref|XP_003004116.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] gi|261356692|gb|EEY19120.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102] Length = 553 Score = 41.4 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Query: 3 RY-CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV 38 RY + + Y G Y G++ Q++ +Q +IE A++ + Sbjct: 79 RYVALRLAYLGKNYNGFEHQQSA--VQATIESALWRL 113 >gi|290970931|ref|XP_002668312.1| predicted protein [Naegleria gruberi] gi|284081639|gb|EFC35568.1| predicted protein [Naegleria gruberi] Length = 241 Score = 41.0 bits (94), Expect = 0.13, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 29/125 (23%) Query: 4 YCMIIEYNGSGYFGWQRQ--------KNGSSIQGSIEKAIFLVTGE-------------- 41 + + YNG + G Q Q + +I+ + ++ GE Sbjct: 103 FVISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTK 162 Query: 42 -----IVVVHGAGRTDSGVHA--LRQVAHFDLVREWVPVILCKALNAYLKISDTISILNL 94 + + A RTD GV A L K N L + I N Sbjct: 163 SKNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINNH 222 Query: 95 SIVDK 99 + Sbjct: 223 VRIKN 227 >gi|145348169|ref|XP_001418528.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578757|gb|ABO96821.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 422 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 12/88 (13%) Query: 4 YCMIIEYNGSGYFGWQRQ------------KNGSSIQGSIEKAIFLVTGEIVVVHGAGRT 51 + Y+G + G+ +S+ +++ A+ V + AGRT Sbjct: 120 FAAKCTYHGPSFAGFAWNASRDFAYDGTFEPGCASVSAALQLALRPVLDKTRPTPSAGRT 179 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKAL 79 D GV AL + + + L Sbjct: 180 DRGVSALASCVSLWSKSDAISAAEIERL 207 >gi|260889971|ref|ZP_05901234.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] gi|260860577|gb|EEX75077.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254] Length = 168 Score = 41.0 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----AGRTDSGVHALR 59 Y +EY+G + + N S++ K + + + AGRTD+ V A Sbjct: 26 YMFFVEYDGQKFESFDENPNKKSVKSEFRKILE---NNKIKIFKGIQQAGRTDANVSAKG 82 Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRR 110 + + + L +KI+ L + R+ Sbjct: 83 NILYINSKEIIDFSKLKFLETEGMKINKIARTLPFLEFPQMIEKRYYIYEY 133 >gi|330507838|ref|YP_004384266.1| hypothetical protein MCON_1858 [Methanosaeta concilii GP-6] gi|328928646|gb|AEB68448.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 54 Score = 40.6 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%) Query: 216 TDLEKALQAQDRKECGPLAPPEGLYFDSVEY 246 + L+ +R P AP GL +V Y Sbjct: 21 SWFSDLLR-PERNHGAPTAPAVGLILMNVGY 50 >gi|7670391|dbj|BAA95047.1| unnamed protein product [Mus musculus] Length = 257 Score = 40.6 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 29/149 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNG---SSIQGSIEKAIFLV---------TGEIVVVHGAG 49 + +++ Y+G GY G QR +I+ + A+ + Sbjct: 80 RKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRCA 139 Query: 50 RTDS--GVHALRQVAHFDLVRE-------------WVPVILCKALNAYLKISDTISILNL 94 RTD A + L W+ + +N++L I IL L Sbjct: 140 RTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKVWLIDDILDKINSHL--PSHIRILGL 197 Query: 95 SIVDKQFHARFSAIRRSYLYRIITRQAPL 123 V F+++ R+Y Y + T Sbjct: 198 KRVTGGFNSKNKCDARTYCYMLPTFAFAH 226 >gi|303285768|ref|XP_003062174.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456585|gb|EEH53886.1| predicted protein [Micromonas pusilla CCMP1545] Length = 554 Score = 40.6 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 31/109 (28%) Query: 4 YCMIIEYNGSGYFGWQR-----------------------------QKNGSSIQGSIEKA 34 Y + Y G + GW S+ ++++A Sbjct: 205 YKAAVAYYGPAFAGWAWLPSDGATDALFRAPDDERGGGAGGGGAEWTPGAHSVVATMQRA 264 Query: 35 IFLVT--GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNA 81 + + + + AGRTD GV AL Q F + + P + A+N Sbjct: 265 LNPLFAGDKERPIQCAGRTDKGVSALAQTVSFWTLNDLDPAEIVAAVNE 313 Score = 39.5 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ-----AQDRKEC-GPL 233 + + +VA FL Q+R V + + T +D+ AL A++R+ P Sbjct: 475 HQPVCVVELVADRFLRKQVRVLVATAAREANCGAT-SDVLLALSRAGGSARERRMATAPP 533 Query: 234 APPEGLYFDSVEY 246 AP GL F V Y Sbjct: 534 APAVGLVFAGVGY 546 >gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii] gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii] Length = 403 Score = 40.6 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 + + + + V SF+ QIR +G+ V ++ Sbjct: 247 AQHYRKIIRCSCGDIEKFGDTLALRVSVTGASFMVHQIRKMIGTAVAVTRKLLPPDIIQM 306 Query: 221 ALQAQDRKECGPLAPPEGLYF 241 +L R P+AP EGL Sbjct: 307 SLCRHSRIVL-PIAPCEGLTL 326 Score = 37.9 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 27/145 (18%) Query: 2 IRYCMIIEYNGSGYFG---------WQRQKNGSSIQGSIEKAIFLVTGE---------IV 43 + M I Y G+GY G + ++I+ ++KAI+ G V Sbjct: 3 KKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHMKV 62 Query: 44 VVHGAGRTDSGVHALRQVAHFDLVREWVPVILC-------KALNAYLKISDTISILNLSI 96 + RTD GVH+L V + +N +L I + + Sbjct: 63 GWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADMINRHL--PQCIRVFGVVP 120 Query: 97 VDKQFHARFSAIRRSYLYRIITRQA 121 V K F R + RSY Y + Sbjct: 121 VSKTFRPRMACSERSYDYFLPALCV 145 >gi|94502462|ref|ZP_01308886.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94450981|gb|EAT13982.1| tRNA pseudouridine synthase A [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 66 Score = 40.3 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%) Query: 158 FRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTD 217 F C + I I + + N++ ++ A R+ VG+L +G GK T + Sbjct: 2 FCKKKCNYKTYICKIFNAKWHIKNNILNFKIEANRNKRKMERTMVGTLIELGIGKITIKE 61 Query: 218 LEKAL 222 L Sbjct: 62 FINIL 66 >gi|221504231|gb|EEE29906.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1512 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I V FL+ +R VG+L V G+ + D+ AL+ Sbjct: 1363 RIDFVGNRFLYKMVRKMVGALVQVALGRLSVDDIRCALE 1401 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSS 26 +++ Y+GS + GW + Sbjct: 523 TNLLLLVAYDGSNFSGWAANLSPPERT 549 >gi|237843965|ref|XP_002371280.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|211968944|gb|EEB04140.1| hypothetical protein, conserved [Toxoplasma gondii ME49] gi|221483763|gb|EEE22075.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 1509 Score = 40.3 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 I V FL+ +R VG+L V G+ + D+ AL+ Sbjct: 1360 RIDFVGNRFLYKMVRKMVGALVQVALGRLSVDDIRCALE 1398 Score = 36.8 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%) Query: 2 IRYCMIIEYNGSGYFGWQRQ--KNGSS 26 +++ Y+GS + GW + Sbjct: 520 TNLLLLVAYDGSNFSGWAANLSPPERT 546 >gi|207093446|ref|ZP_03241233.1| tRNA pseudouridine synthase A [Helicobacter pylori HPKX_438_AG0C1] Length = 60 Score = 40.3 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 +++ +FL + +R + + K T ++E + P+ GLY V Sbjct: 1 FKIIGDAFLRSSVRLIIQACVQYSLEKITLAEIEMQIHNIKATIRTPIM-ANGLYLHRVY 59 Query: 246 Y 246 Y Sbjct: 60 Y 60 >gi|68487205|ref|XP_712546.1| hypothetical protein CaO19.10981 [Candida albicans SC5314] gi|68487266|ref|XP_712516.1| hypothetical protein CaO19.3477 [Candida albicans SC5314] gi|74679680|sp|Q59S63|PUS1_CANAL RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA pseudouridylate synthase 1; AltName: Full=tRNA-uridine isomerase 1 gi|46433909|gb|EAK93335.1| hypothetical protein CaO19.3477 [Candida albicans SC5314] gi|46433941|gb|EAK93366.1| hypothetical protein CaO19.10981 [Candida albicans SC5314] Length = 450 Score = 39.5 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 5/117 (4%) Query: 134 PKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSF 193 + + F+ + V I I++ +SF Sbjct: 224 QHFREVMKQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSF 283 Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSV---EYS 247 + QIR + LV + Q+ K P AP GL ++ Y+ Sbjct: 284 MLHQIRKMIAMAALVVRLSLPCGIINNFFQST--KINIPKAPALGLLLENPVFDGYN 338 >gi|34782865|gb|AAH13427.2| PUS3 protein [Homo sapiens] Length = 253 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL--QAQDRKECG 231 L + V ++FL+ Q+R + L L+G G +++ L + +K Sbjct: 27 EGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQY 86 Query: 232 PLAPPEGLYFDSVEY 246 +A L ++ Sbjct: 87 SMAVEFPLVLYDCKF 101 >gi|66807627|ref|XP_637536.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4] gi|60465972|gb|EAL64039.1| hypothetical protein DDB_G0286567 [Dictyostelium discoideum AX4] Length = 615 Score = 39.5 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYF 241 VV SFL QIR +G V G L+ +L++ C P++PP L+ Sbjct: 414 QWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIGLQLSLKSP-FSICSPISPPFPLFL 472 Query: 242 DSVEY 246 V + Sbjct: 473 YDVNF 477 Score = 38.3 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 5 CMIIEYNGSGYFGWQRQKNGS--SIQGSIEK--------AIFLVTG-EIVVVHGAGRTDS 53 + YNGS Y+G + +I+ IEK A+ + + + + + RTD Sbjct: 151 ALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGNLKRIKLSRSSRTDK 210 Query: 54 GVHA 57 GVH+ Sbjct: 211 GVHS 214 >gi|59634318|gb|AAW88358.1| pseudouridine synthase 1 [Schistosoma japonicum] Length = 170 Score = 39.5 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 194 LHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + Q+R +G + + G T D+ + ++R P AP GL + V++S Sbjct: 1 MLHQVRKMIGLVLGILRGYAT-EDVFDIVFCKER-VDIPKAPGLGLMLNQVDFS 52 >gi|298708456|emb|CBJ30580.1| conserved unknown protein [Ectocarpus siliculosus] Length = 822 Score = 39.1 bits (89), Expect = 0.50, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKEC---GPLAPPEG 238 + + + + +F+ Q+R V G ++ + + R+E PLAP Sbjct: 348 DYVCLSINGDAFMSQQVRGMVALAVAGARGLISAEGIAATID-PTRQEDLLPVPLAPAAP 406 Query: 239 LYFDSVEYS 247 V YS Sbjct: 407 CSLAEVGYS 415 >gi|326482502|gb|EGE06512.1| pseudouridylate synthase [Trichophyton equinum CBS 127.97] Length = 440 Score = 39.1 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 6/39 (15%) Query: 4 YCMIIEYNGSGYFGWQRQKNG-----SSIQGSIEKAIFL 37 + Y G Y G NG +I+ + KA+ Sbjct: 93 IAIKFAYLGKRYNGL-EHANGNYTEVPTIEEELWKALRK 130 >gi|257468648|ref|ZP_05632742.1| tRNA pseudouridine synthase A [Fusobacterium ulcerans ATCC 49185] gi|317062905|ref|ZP_07927390.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688581|gb|EFS25416.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 283 Score = 38.7 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 63/214 (29%), Gaps = 26/214 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y I YNG+ + + SI+G + + + T V AGRTD+ V A + Sbjct: 14 YMFYISYNGAKFQSFDEMNEKKSIKGKFREVMEKIGFTWAK-GVQQAGRTDAKVSANENI 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + N + I + F + Y Sbjct: 73 LYVSSNFNGNIKKIQEDFNKN----SDTDLKVTMIKKTFPNIVFPDMIEKREYIY----- 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K+ + E ++ + + IR +V Sbjct: 124 ------SYPEKLIKNTEEEIEKLCKELSGTYDVSEFTDKKGLELKEHIR-----EVKITY 172 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++R + SF+ Q+R G + GK Sbjct: 173 ENGKLRFLGNSFMPKQVRIMSGYIL---TGKKEP 203 >gi|323306932|gb|EGA60216.1| Pus1p [Saccharomyces cerevisiae FostersO] Length = 361 Score = 38.7 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 I I++ +SF+ QIR V L+ + +A +K P AP GL Sbjct: 160 QTEWISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQA--YGQQKINIPKAPALGL 217 Query: 240 YFDSV---EYS 247 ++ Y+ Sbjct: 218 LLEAPVFEGYN 228 >gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 162 Score = 38.7 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 12/130 (9%) Query: 94 LSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRH 153 V +F ARFS +R+Y Y R L+ + D N+ Sbjct: 15 WCPVSPEFSARFSCGQRTYRYFFPRRNLDLSAMAQGLQYMMGRHDFRNL----------- 63 Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKW 213 + I+ + +S ++ + +V ++FL QIR + L VG Sbjct: 64 -CKMNCEQNEGEHPVIQPTEQSKPSSSRDMCHVEIVGQAFLWHQIRCIMSILFYVGRQLE 122 Query: 214 TSTDLEKALQ 223 T +++ Sbjct: 123 TPQIVQQLFD 132 >gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina 98AG31] Length = 568 Score = 38.7 bits (88), Expect = 0.81, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 30/95 (31%) Query: 2 IRYCMIIEYNGSGYFGWQRQKN---GSSIQGSIEKAIFLV-------------------- 38 + + I Y G + G Q ++++G + KA+ Sbjct: 87 RKIALQIVYQGWNHGGLAWQPEITPLTTVEGELFKALLSARLVEMSEEFQEEDREEILKT 146 Query: 39 --TGEIVVVHG-----AGRTDSGVHALRQVAHFDL 66 E V + G AGRTD+GV QV + Sbjct: 147 EEWREAVDLEGWEYSRAGRTDAGVSGSGQVVSLWV 181 Score = 35.6 bits (80), Expect = 5.6, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 17/83 (20%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL-----------------Q 223 + + +FL+ Q+R+ + L L+G + ++ L + Sbjct: 364 NQMYVFDLRGSAFLYNQVRNIMAILFLIGSRLESPNLIDGLLYTDSSAQKPEGLGLITDE 423 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 DRK +A L Y Sbjct: 424 FVDRKPEMAIASELPLLLWDCIY 446 >gi|326430199|gb|EGD75769.1| hypothetical protein PTSG_07888 [Salpingoeca sp. ATCC 50818] Length = 173 Score = 38.3 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 I I+V +SF+ QIR +G V G D+ + P P GLY Sbjct: 1 MEWIRIQVKGQSFMLHQIRKMIGMAVAVARGFAVMEDVYSTFNHE--SVDVPRIPGLGLY 58 Query: 241 FDSV---EYS 247 DSV Y+ Sbjct: 59 LDSVFFDFYN 68 >gi|108743218|dbj|BAE95388.1| pseudouridine synthase [Saccharomyces bayanus] Length = 202 Score = 37.9 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS---IHCQASSPIRTID 173 + + K LD M AA + +G +DF F + + Sbjct: 29 FDARFSCTNRHYKYVFNGKHLDITKMSKAASYFLGENDFRNFCKLDGSKQLTNFKRSIVS 88 Query: 174 HFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP- 232 + +V +FL Q+R + L LVG + + L + + Sbjct: 89 AKILPVSDTFYCFDLVGSAFLWHQVRCMMAILFLVGQTHEEPEIVLRLLDIEKTPQKPVY 148 Query: 233 -LAPPEGLYFDSVEY 246 +A L E+ Sbjct: 149 DMADEIPLLLYDCEF 163 >gi|253582898|ref|ZP_04860116.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251835104|gb|EES63647.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 283 Score = 37.9 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 26/214 (12%) Query: 4 YCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLV--TGEIVVVHGAGRTDSGVHALRQV 61 Y I YNG + + S++G + + V T + AGRTD+ V A + Sbjct: 14 YMFYISYNGQKFQSFDEINGKKSVKGKFKDIMEKVGFTWAK-GIQQAGRTDAKVSANENI 72 Query: 62 AHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQA 121 + + + N + + + F + Y Sbjct: 73 LYVSSNFNGDINKIQEKFNKN----SDDELKVTMVKKTFPNIIFPDMIEKREYIY----- 123 Query: 122 PLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFG 181 + K+ + E ++ + + IR +V Sbjct: 124 ------SYPEKLIKNTEKEIEKLCKELSGIYDVSEFTDKKGLELKEHIR-----EVKITY 172 Query: 182 NLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTS 215 ++R + SF+ Q+R G + GK Sbjct: 173 ERGKLRFLGSSFMPKQVRIMSGYIL---TGKKEP 203 >gi|108743226|dbj|BAE95392.1| pseudouridine synthase [Saccharomyces bayanus] Length = 215 Score = 37.2 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 117 ITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIH--CQASSPIRTIDH 174 + + + LD M AA + +G +DF F + Q + RTI Sbjct: 29 FDARFSCTRRHYKYVFNGRHLDITKMSKAASYFLGENDFRNFCKLDGSKQLTKFKRTIVS 88 Query: 175 FDV-NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 ++ +V +FL Q+R + L LVG + L Sbjct: 89 AEILPVSDTFYCFDLVGSAFLWHQVRCMMAILFLVGQTHEEPEIVLCLLD 138 >gi|212535964|ref|XP_002148138.1| inositol kinase kinase (UvsB), putative [Penicillium marneffei ATCC 18224] gi|210070537|gb|EEA24627.1| inositol kinase kinase (UvsB), putative [Penicillium marneffei ATCC 18224] Length = 2386 Score = 36.8 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 4/196 (2%) Query: 23 NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAY 82 + S++ ++ A+ L + + TD V++L DL ++ + +N++ Sbjct: 2100 DVVSVEKVLDDALVLNSLQKPRKISILGTDGKVYSLLCKPKDDLRKDQRLMEFNNMINSF 2159 Query: 83 LKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENM 142 LK + I + + + + + + + Sbjct: 2160 LKKDIDSIKRRMYIKT--YAVTPLNEECGLIEWVDNLRTLRDIVMKLLRERGIIPNFNEI 2217 Query: 143 RIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFV 202 R D + + P + F + R + + S V Sbjct: 2218 RHYLNEACSHSDKLPVFTTMILSKLPPVLHEWFVEMFPDPGAWLEARLRFTRTSAVMSMV 2277 Query: 203 GSLKLVGDGKWTSTDL 218 G + G G ++ Sbjct: 2278 GHVL--GLGDRHGENI 2291 >gi|290982091|ref|XP_002673764.1| predicted protein [Naegleria gruberi] gi|284087350|gb|EFC41020.1| predicted protein [Naegleria gruberi] Length = 495 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 186 IRVVARSFLHTQIRSFVGSLK--LVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 I+V A FL+ QIR VG L+ + ++ A+ +++ P AP + L Sbjct: 244 IKVTASGFLYHQIRKMVGLAISHLIFPKEINDEFIDIAINSKE-TMFIPTAPGDSLILLH 302 >gi|307105485|gb|EFN53734.1| hypothetical protein CHLNCDRAFT_136316 [Chlorella variabilis] Length = 353 Score = 36.4 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 12/25 (48%) Query: 223 QAQDRKECGPLAPPEGLYFDSVEYS 247 +DR+ AP +GL F YS Sbjct: 325 ATRDRRVSAAPAPAQGLCFLEAGYS 349 >gi|255081298|ref|XP_002507871.1| predicted protein [Micromonas sp. RCC299] gi|226523147|gb|ACO69129.1| predicted protein [Micromonas sp. RCC299] Length = 523 Score = 36.4 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 23 NGSSIQGSIEKAIFLVT--GEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILC--KA 78 S+ SI++A+ + + ++H AGRTD GVHA Q + A Sbjct: 237 GERSVSASIQRALRPLFSSDKERLIHSAGRTDKGVHAAAQCFSVWSNAKDTFTPRNVRDA 296 Query: 79 LNAYLKISDTISIL--NLSIVDKQFHARFSAIRRSYLYRIITR 119 L A+ + + ++ V FHA F A R Y+Y + R Sbjct: 297 LVAHPAHAAGAWRVVGDVEEVSDAFHATFCATWRRYVYILPMR 339 >gi|223995025|ref|XP_002287196.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976312|gb|EED94639.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 837 Score = 36.0 bits (81), Expect = 4.2, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 11/127 (8%) Query: 19 QRQKNGSSIQGSIEKAIFL---------VTGEIVVVHGAGRTDSGVHALRQVAHFDLVRE 69 Q Q + S++ I A+ + E + V+G+ D V + D E Sbjct: 271 QIQASSSAVVEEIISALARGEIFIPHVSILPEGLSVNGSSPPDL-VVRFDCEKNDDSNPE 329 Query: 70 WVPVILCKALNAYLKISDTISILNLSIVDKQFH-ARFSAIRRSYLYRIITRQAPLALEKG 128 P + L+ L + Q AR + + + + + Sbjct: 330 EWPNWCLEFLHNQLYDYFAPMGAQWTKRPFQITLARKVRWKTAKHMNMYFSHSEEVINTW 389 Query: 129 RAWLIPK 135 R Sbjct: 390 REQGPQF 396 >gi|325118855|emb|CBZ54407.1| Pseudouridylate synthase, related [Neospora caninum Liverpool] Length = 822 Score = 36.0 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 13/20 (65%) Query: 2 IRYCMIIEYNGSGYFGWQRQ 21 +Y ++ YNG G+ G Q+Q Sbjct: 175 KKYALLFGYNGEGFHGLQKQ 194 >gi|72162883|ref|YP_290540.1| HAD family hydrolase [Thermobifida fusca YX] gi|71916615|gb|AAZ56517.1| HAD-superfamily hydrolase subfamily IA, variant 3 [Thermobifida fusca YX] Length = 218 Score = 35.6 bits (80), Expect = 5.5, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 174 HFDVNSFGNLIEIRVVARSFLHTQ-IRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP 232 + E+ + + RS V +L+ G+ + E+ L A+ R G Sbjct: 29 EQERIDRAAYREVMRTWVHAAYHEGARSPVHALE---RGEVDPAEFERMLAARLRLVDGG 85 Query: 233 LAPPEGLY 240 P EGL Sbjct: 86 PVPAEGLI 93 >gi|117670124|gb|ABK56706.1| notch protein [Parhyale hawaiensis] Length = 2488 Score = 35.6 bits (80), Expect = 5.9, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 37/159 (23%), Gaps = 3/159 (1%) Query: 54 GVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYL 113 GV+ + +N++ V+ + R S + Sbjct: 939 GVNCQNDLDECASNPCQNGATCHDYVNSFTCQCPLGFSGTNCEVNDEDCTRSSCMNNGTC 998 Query: 114 YRIITRQAPLALEKG---RAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR 170 I L D + + + +T + + R Sbjct: 999 KDGINSYTCDCLPGFVGSHCQHHVNECDSNPCQNNGRCIDHVGYYTCYCPYGYTGKNCER 1058 Query: 171 TIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 +D N + +F + + G+L V Sbjct: 1059 YVDWCSSRPCDNGGKCIQTRNTFRCECPQMWTGALCDVA 1097 >gi|156743271|ref|YP_001433400.1| HhH-GPD family protein [Roseiflexus castenholzii DSM 13941] gi|156234599|gb|ABU59382.1| HhH-GPD family protein [Roseiflexus castenholzii DSM 13941] Length = 297 Score = 35.2 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 9/107 (8%) Query: 27 IQGSIEKAIF-------LVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 +Q IE+A+ + GE VH A T+ + AHF + V C A Sbjct: 181 VQHLIERALSPFLPALATIAGEPFHVHRAVETNG--NGAFFFAHFHALIIEACVHHCLAR 238 Query: 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALE 126 N A + Sbjct: 239 NPRCDRPGGQRAFIDRRKCANHCLMCDGCPLRRRCATFNGTATAHPD 285 >gi|328772887|gb|EGF82924.1| hypothetical protein BATDEDRAFT_33866 [Batrachochytrium dendrobatidis JAM81] Length = 580 Score = 35.2 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%) Query: 150 VGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVG 209 C + +++ + I++ A +F Q+R + + +V Sbjct: 390 HNYIPGADQSDPRCYIRIINIDVRDTELHEGMEWVRIKIQAPAFARYQVRRMMALVIMVL 449 Query: 210 DGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 + + K P AP L D Y+ Sbjct: 450 RTNTPHSVVAN--SYGFAKMEIPEAPALSLVLDEPHYN 485 >gi|319957014|ref|YP_004168277.1| amidohydrolase 3 [Nitratifractor salsuginis DSM 16511] gi|319419418|gb|ADV46528.1| Amidohydrolase 3 [Nitratifractor salsuginis DSM 16511] Length = 664 Score = 34.9 bits (78), Expect = 10.0, Method: Composition-based stats. Identities = 13/154 (8%), Positives = 36/154 (23%), Gaps = 13/154 (8%) Query: 101 FHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 R ++T + + + ++ + R+ Sbjct: 369 MQLREGYTDGHKGEWMMTPELYAKAFRKYWDAGYMIVTHVTGDAGLDMMLDNLELNMRRN 428 Query: 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEK 220 RT + + I+ + + + +++ Sbjct: 429 PRYD----HRTTAVHFGVAQPDQIKKIKRLGAIVSANPYYVTALADNYAKHGMSPERVKR 484 Query: 221 ALQAQDRKECG---------PLAPPEGLYFDSVE 245 + A D + G P+AP + L+ Sbjct: 485 MVPAGDLERAGVHFSYHSDMPMAPAQPLFLMDCG 518 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.315 0.116 0.348 Lambda K H 0.267 0.0353 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,608,703,798 Number of Sequences: 14124377 Number of extensions: 69458441 Number of successful extensions: 252674 Number of sequences better than 10.0: 3401 Number of HSP's better than 10.0 without gapping: 3155 Number of HSP's successfully gapped in prelim test: 246 Number of HSP's that attempted gapping in prelim test: 243697 Number of HSP's gapped (non-prelim): 3914 length of query: 247 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 112 effective length of database: 2,936,002,735 effective search space: 328832306320 effective search space used: 328832306320 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 79 (35.3 bits)