RPSBLAST alignment for GI: 254780295 and conserved domain: pfam01416
>gnl|CDD|144857 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase. Involved in the formation of pseudouridine at the anticodon stem and loop of transfer-RNAs Pseudouridine is an isomer of uridine (5-(beta-D-ribofuranosyl) uracil, and id the most abundant modified nucleoside found in all cellular RNAs. The TruA-like proteins also exhibit a conserved sequence with a strictly conserved aspartic acid, likely involved in catalysis. Length = 103
Score = 40.9 bits (96), Expect = 3e-04
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 24/80 (30%)
Query: 6 MIIEYNGSGYF-GWQRQKNGSSIQGSIEKAIFLVTGE------IVVVHG----------- 47
Y+G+ F G+Q+Q+ ++Q S+ + I + E + + G
Sbjct: 1 AAKLYDGTHDFSGFQKQR---TVQKSLIRTIEKIGIERDGELYVFEIKGNGFLYHQVRIM 57
Query: 48 ---AGRTDSGVHALRQVAHF 64
RT GVHAL QV
Sbjct: 58 VGALLRTGKGVHALEQVVSL 77