RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] (247 letters) >gnl|CDD|30020 cd02570, PseudoU_synth_EcTruA, PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.. Length = 239 Score = 310 bits (797), Expect = 2e-85 Identities = 113/241 (46%), Positives = 151/241 (62%), Gaps = 2/241 (0%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFD 65 + IEY+G+ + GWQRQ NG ++QG +EKA+ + GE V V GAGRTD+GVHAL QVAHFD Sbjct: 1 LTIEYDGTNFSGWQRQPNGRTVQGELEKALSKIAGEPVRVIGAGRTDAGVHALGQVAHFD 60 Query: 66 LVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLAL 125 E L KALN+ L I +L+ V FHARFSA R+Y YRI+ R P Sbjct: 61 TPSEIPLEKLIKALNSLLP--PDIRVLSAEEVPDDFHARFSAKSRTYRYRILNRPVPSPF 118 Query: 126 EKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIE 185 + W +P+ LD E M+ AA+ L+G HDF++FR+ CQ+ S +RTI DV G+LI Sbjct: 119 LRRYVWHVPRPLDIEAMQEAAKLLLGTHDFSSFRAAGCQSKSTVRTIYRADVYREGDLIV 178 Query: 186 IRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVE 245 + A FL+ +R+ VG+L VG GK + D+++ L+A+DR GP AP GLY VE Sbjct: 179 FEIRANGFLYHMVRNIVGTLLEVGRGKLSPEDIKEILEAKDRTAAGPTAPAHGLYLVKVE 238 Query: 246 Y 246 Y Sbjct: 239 Y 239 >gnl|CDD|30450 COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]. Length = 266 Score = 290 bits (743), Expect = 3e-79 Identities = 112/246 (45%), Positives = 148/246 (60%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 M R + I Y+G+ + GWQRQ N ++QG +EKA+ + GE V V GAGRTD+GVHAL Q Sbjct: 1 MKRIALKIAYDGTRFHGWQRQPNVRTVQGELEKALSKIGGESVRVIGAGRTDAGVHALGQ 60 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HFD + L +ALNA L I +L+++ V FHARFSA R+Y Y I Sbjct: 61 VVHFDTPADRPLEKLVRALNALLP--PDIRVLDVAEVPDDFHARFSAKSRTYRYIIYNAP 118 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 W +P LD + MR AA+ L+G HDFT+FR CQ+ SP+RTI DV+ Sbjct: 119 LRPPFLANYVWHVPYPLDLDAMREAAKLLLGTHDFTSFRKAGCQSKSPVRTIYRIDVSRD 178 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G+LI I + SFL +R+ VG+L LVG GK +++ L+A+DRK GP AP EGLY Sbjct: 179 GDLIVIDISGNSFLWHMVRNIVGALLLVGRGKRPVEWIKELLEAKDRKLAGPTAPAEGLY 238 Query: 241 FDSVEY 246 V+Y Sbjct: 239 LVRVDY 244 >gnl|CDD|30005 cd00497, PseudoU_synth_TruA_like, PseudoU_synth_TruA: Pseudouridine synthase, TruA family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruA, Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus3p Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae PUS1 catalyzes the formation of psi34 and psi36 in the intron containing tRNAIle, psi35 in the intron containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Psi44 in U2 snRNA and, psi38 and psi39 in tRNAs are highly phylogenetically conserved. Psi 26,27,28,34,35,36,65 and 67 in tRNAs are less highly conserved. Mouse Pus1p regulates nuclear receptor activity through pseudouridylation of Steroid Receptor RNA Activator. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).. Length = 224 Score = 156 bits (397), Expect = 4e-39 Identities = 76/244 (31%), Positives = 110/244 (45%), Gaps = 25/244 (10%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVAH 63 I Y+G Y G+QRQ + +++G + KA+ + + + AGRTD GV AL QV Sbjct: 1 IAYDGWKYHGFQRQPDVPTVEGELFKALLKTGLIESPKPSNYSRAGRTDKGVSALGQVVS 60 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 + R + LN L I +L + V + FHARFS + R+Y Y Sbjct: 61 LE-TRSKLK-PYPDILNGLLP--KDIRVLAWAPVPEDFHARFSCVSRTYRY--------- 107 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 + LD E MR AA+ L+G HDF F + +P+RTI +V + Sbjct: 108 -------YFPGGDLDIEAMREAAKLLLGTHDFRNFCKKDGRKKNPVRTIISAEVEEVDDF 160 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGP-LAPPEGLYFD 242 V +SFL Q+R V +L LVG G + + + L + R APPE L Sbjct: 161 YVFEVKGKSFLWHQVRRIVAALFLVGQGLEPPSIISRLLDEEKRPSKPQYPAPPEPLVLW 220 Query: 243 SVEY 246 +Y Sbjct: 221 DCKY 224 >gnl|CDD|39594 KOG4393, KOG4393, KOG4393, Predicted pseudouridylate synthase [RNA processing and modification, Translation, ribosomal structure and biogenesis]. Length = 295 Score = 142 bits (358), Expect = 1e-34 Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 27/271 (9%) Query: 3 RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59 RY + I Y+G+ + + K +IQG +E+A TG + + + + RTD+GVHA Sbjct: 6 RYLLKIPYDGTAFEESAERLSKVARTIQGFLEEASEEQTGLDRLDLESSSRTDAGVHAYL 65 Query: 60 QVAHFDLVREWV--PVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRI 116 AH+ + R +A+N L+ D I ++++ V FHAR+SA R+Y YR+ Sbjct: 66 NAAHYIVPRFSGSQQQAKDRAVNTVLQRKDGDIRVIDVRCVPSNFHARYSASSRTYFYRL 125 Query: 117 ITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175 + PL+ E+ R W +P+ L+ M+ AA G HDF+ F P T Sbjct: 126 ASGSDPLSIFERDRCWHLPEELNARKMQEAAPLFEGSHDFSAFTEATSTVYFPSITERRL 185 Query: 176 DV----------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219 V N+ + FL+ Q+R L G + Sbjct: 186 SVLNNGDPLACSNQPETEGVTTNVGNVEGETEGFLYRQVRRMRAYLVTAGSRALLYHQVL 245 Query: 220 KALQAQDR----KECGPLAPPEGLYFDSVEY 246 L+ +D K G +APP GL+ SVEY Sbjct: 246 YILEVRDIVGLLKCVGTVAPPHGLFLSSVEY 276 >gnl|CDD|30026 cd02866, PseudoU_synth_TruA_Archea, PseudoU_synth_archea: Pseudouridine synthase,. This group consists of archealpseudouridine synthases.Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. This group of proteins make Psedouridine in tRNAs.. Length = 221 Score = 136 bits (343), Expect = 7e-33 Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 28/243 (11%) Query: 8 IEYNGSGYFGWQRQKNGSSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVAH 63 + Y+G+ Y G+QRQ + +++G + KA+ + + + ++ AGRTD+GV AL V Sbjct: 3 VAYDGTPYHGFQRQPDVRTVEGELIKALRRLGIIESPKRPRLYSAGRTDAGVSALGNVVA 62 Query: 64 FDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPL 123 F+ +E P A+N L I + + V + FH R A RR Y Y Sbjct: 63 FETEKELTP----PAINNALP--KDIRVWAWAKVPEDFHPRRDARRRYYRY--------- 107 Query: 124 ALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNL 183 +L + D E M AA+ L+G HDF+ F P+RTI+ ++ G Sbjct: 108 -------YLGAEDYDVEAMAEAAKKLIGTHDFSNFSKR--DGRDPVRTIERIEIRENGEF 158 Query: 184 IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDS 243 + I VV SFL +R VG+L LVG GK + ++K L + RK+ G APPEGL Sbjct: 159 LVIDVVGESFLWNMVRRIVGALSLVGKGKRENEWVDKLLDGEFRKKDGVPAPPEGLILVD 218 Query: 244 VEY 246 V+Y Sbjct: 219 VKY 221 >gnl|CDD|73314 cd02568, PseudoU_synth_PUS1_PUS2, PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U2 snRNA and psi32 in tRNAs are highly phylogenetically conserved. Psi 26,27,28,34,35,36,65 and 67 in tRNAs are less highly conserved. Mouse Pus1p regulates nuclear receptor activity through pseudouridylation of Steroid Receptor RNA Activator. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).. Length = 245 Score = 91.1 bits (226), Expect = 3e-19 Identities = 65/265 (24%), Positives = 109/265 (41%), Gaps = 44/265 (16%) Query: 6 MIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRTDSG 54 ++ Y G+GY G Q N +I+G +E+A+ G I + A RTD G Sbjct: 1 LLFGYCGTGYHGMQYNPGNYKTIEGELERALV-KAGAISESNAGDPKKIGFSRAARTDKG 59 Query: 55 VHALRQVAHFDLVREWVPVI-----LCKALNAYLKISDTISILNLSIVDKQFHARFSAIR 109 VHA R V ++ + + L + LN++L + I + ++ V K F+AR + Sbjct: 60 VHAARNVVSLKVIIDDPEGLGIGEDLVEKLNSHL--PEDIRVFGITRVTKSFNARKACDS 117 Query: 110 RSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFT--TFRSIHCQASS 167 R+Y Y + T ALE + VG H+F T R S+ Sbjct: 118 RTYEYLLPT----FALETLDR-----------FNEILKLYVGTHNFHNFTVRKKFEDPSA 162 Query: 168 PIRTIDHFDVNSFGNL------IEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKA 221 R I F V+ + + I + +SF+ QIR +G + G + ++ + Sbjct: 163 -NRFIISFYVSEPFVIEEGLEWVSIEIHGQSFMLHQIRKMIGLAIAIVRGGAPESLIDLS 221 Query: 222 LQAQDRKECGPLAPPEGLYFDSVEY 246 + ++ PLAP GL + + Sbjct: 222 FN-KAKRIIIPLAPGLGLLLEYPHF 245 >gnl|CDD|144857 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase. Involved in the formation of pseudouridine at the anticodon stem and loop of transfer-RNAs Pseudouridine is an isomer of uridine (5-(beta-D-ribofuranosyl) uracil, and id the most abundant modified nucleoside found in all cellular RNAs. The TruA-like proteins also exhibit a conserved sequence with a strictly conserved aspartic acid, likely involved in catalysis. Length = 103 Score = 90.2 bits (224), Expect = 5e-19 Identities = 33/103 (32%), Positives = 45/103 (43%) Query: 145 AAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGS 204 AA+ G HDF+ F+ S IRTI+ + G L + FL+ Q+R VG+ Sbjct: 1 AAKLYDGTHDFSGFQKQRTVQKSLIRTIEKIGIERDGELYVFEIKGNGFLYHQVRIMVGA 60 Query: 205 LKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 L G G + L ++ R P AP GLY V Y Sbjct: 61 LLRTGKGVHALEQVVSLLNSKLRPPAPPTAPAVGLYLFHVRYD 103 Score = 40.9 bits (96), Expect = 3e-04 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 24/80 (30%) Query: 6 MIIEYNGSGYF-GWQRQKNGSSIQGSIEKAIFLVTGE------IVVVHG----------- 47 Y+G+ F G+Q+Q+ ++Q S+ + I + E + + G Sbjct: 1 AAKLYDGTHDFSGFQKQR---TVQKSLIRTIEKIGIERDGELYVFEIKGNGFLYHQVRIM 57 Query: 48 ---AGRTDSGVHALRQVAHF 64 RT GVHAL QV Sbjct: 58 VGALLRTGKGVHALEQVVSL 77 >gnl|CDD|37765 KOG2554, KOG2554, KOG2554, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]. Length = 425 Score = 88.1 bits (218), Expect = 2e-18 Identities = 65/263 (24%), Positives = 96/263 (36%), Gaps = 56/263 (21%) Query: 15 YFGW-------QRQKNGSSIQGSIEKAIF---LVTG-EIVVVHGAGRTDSGVHALRQVAH 63 Y GW Q N +I+G + +A+ L+ + GRTD GV A QV Sbjct: 74 YLGWNYQGLAPQEHTNNPTIEGKLFEALKKTRLIESRQTCNYSRCGRTDKGVSAFGQVIS 133 Query: 64 FDLV---------REWVP------VILCKALNAYLKISDTISILNLSIVDKQFHARFSAI 108 L R+ V + LN L I I+ + V F ARFS + Sbjct: 134 LVLRSRIPMPDSQRDAVATADSEEIPYVHMLNRVL--PPDIRIVAWAPVPPTFSARFSCV 191 Query: 109 RRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTF--RSIHCQAS 166 +R+Y Y + K LD + M AA LVG HDF F + + Sbjct: 192 QRTYRY----------------YFPKKDLDIDRMSKAASLLVGEHDFRNFCKIDVSNGVT 235 Query: 167 SPIRTIDH---FDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQ 223 + RTI DV + + + +FL Q+R + L L+G G Sbjct: 236 NYERTILSAKVEDVGQTPGMYYLDIQGSAFLWHQVRCIMAILFLIGQGL---EQPSLISD 292 Query: 224 AQDRKECGPLAPPEGLYFDSVEY 246 D ++ P + Y + +Y Sbjct: 293 LLDIEK----NPQKPQYTMASDY 311 >gnl|CDD|30019 cd02569, PseudoU_synth_ScPus3, PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like. This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya.. Length = 256 Score = 86.8 bits (215), Expect = 5e-18 Identities = 59/236 (25%), Positives = 90/236 (38%), Gaps = 49/236 (20%) Query: 8 IEYNGSGYFGWQRQKNG-SSIQGSIEKAI----FLVTGEIVVVHGAGRTDSGVHALRQVA 62 Y G Y G+ Q+ ++++ ++ +A+ + + GRTD GV A QV Sbjct: 3 FAYLGWNYNGFAVQEETTNTVEETLFEALEKTRLIEDRQTSNYSRCGRTDKGVSAFGQVI 62 Query: 63 HFDL--------------VREWV----PVILCKALNAYLKISDTISILNLSIVDKQFHAR 104 D+ + + CK LN L I IL + V F AR Sbjct: 63 SLDVRSNLKPEDGLDPSTDVKSTADEEELPYCKILNRVL--PPDIRILAWAPVPPDFSAR 120 Query: 105 FSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSI--H 162 FS + R+Y Y + LD E MR AA+ L+G HDF F + Sbjct: 121 FSCVSRTYRY----------------FFPKGDLDIELMRKAAKLLLGEHDFRNFCKMDVA 164 Query: 163 CQASSPIRTIDHFDVNSFGN------LIEIRVVARSFLHTQIRSFVGSLKLVGDGK 212 Q ++ +R + +V L V +FL Q+R + L L+G G Sbjct: 165 NQVTNYVRRVLSAEVEPVDQHPDGDGLYYFEVRGSAFLWHQVRCMMAVLFLIGQGL 220 >gnl|CDD|37764 KOG2553, KOG2553, KOG2553, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]. Length = 416 Score = 81.9 bits (202), Expect = 1e-16 Identities = 63/299 (21%), Positives = 106/299 (35%), Gaps = 59/299 (19%) Query: 2 IRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG----------AGRT 51 + +++ Y G+GY G Q +I+G + +A+F G I + A RT Sbjct: 37 RKVAILLGYCGTGYHGMQYNPPLKTIEGELFEALFKA-GAISESNAGDPKKIGFARAART 95 Query: 52 DSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRS 111 D GVHA V L + L + LN L + I + + V K F+ R R+ Sbjct: 96 DKGVHAAGNVISLKLELD--DPELVEKLNEIL--PEQIRVWGVKRVTKSFNPRKQCDSRT 151 Query: 112 YLY-------------RIITRQAPLALEKG------------RAWLIPKSLDCENMRIAA 146 Y Y ++ E R++ Sbjct: 152 YEYLLPTFALAPPKPSSLLEVDIQYDKEFEKEFWNTYPLSAKERLSGQDRKTESGYRLSE 211 Query: 147 QHL----------VGRHDFTTFRSIHCQAS-SPIRTIDHFDVNSFGNL-------IEIRV 188 + L VG H+F F + S R I F V+ + ++I++ Sbjct: 212 EKLEVFNTILSKYVGTHNFHNFTTGKDFTDPSSNRFIKSFTVSEPFVINDEGVEFVKIKI 271 Query: 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLYFDSVEYS 247 +SF+ QIR VG L+ ++ +++A + + P AP EGL + + Sbjct: 272 HGQSFMLHQIRKMVGLAVLIVRSGAPASTIQRAFNKEHKINI-PKAPGEGLLLEEPHFE 329 >gnl|CDD|32117 COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 173 Score = 30.7 bits (69), Expect = 0.43 Identities = 12/42 (28%), Positives = 25/42 (59%) Query: 6 MIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHG 47 +IE NG+ Q+ NG + +G+ ++AI+ + + +V+ G Sbjct: 80 EVIEANGNPATFSQKVDNGKTQKGTADQAIYDLKNDTIVLTG 121 >gnl|CDD|110528 pfam01531, Glyco_transf_11, Glycosyl transferase family 11. This family contains several fucosyl transferase enzymes. Length = 298 Score = 28.3 bits (63), Expect = 2.1 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLY 114 AYL DTI + N ++ D +F + +A ++Y Sbjct: 263 AYLTGGDTIYLANFNLPDSEFLKKEAAYLPEWVY 296 >gnl|CDD|38733 KOG3524, KOG3524, KOG3524, Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]. Length = 850 Score = 27.7 bits (61), Expect = 2.7 Identities = 10/36 (27%), Positives = 21/36 (58%) Query: 157 TFRSIHCQASSPIRTIDHFDVNSFGNLIEIRVVARS 192 +F S+H + P + ID +N+ ++ +IR +A+ Sbjct: 634 SFASLHSRQRRPYKHIDLIQLNTIRSVFDIREIAKC 669 >gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A. Length = 428 Score = 27.1 bits (61), Expect = 4.2 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 21 QKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 + SIE+ + G+I +D GV + +L R P ++ L Sbjct: 229 GVWTEKLIESIEELVK--NGKIKGSDIRDESDRGVRIV-----IELKRGADPEVVLNKLY 281 Query: 81 AYLKISDTISILNLSIVDKQ 100 K+ + S NL + D Sbjct: 282 KKTKLQSSFSTNNLVLFDGG 301 >gnl|CDD|31450 COG1258, COG1258, Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]. Length = 398 Score = 27.2 bits (60), Expect = 4.4 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 25/123 (20%) Query: 20 RQKNGSSIQGSIEKAIF-LVTGEIVVVHGAGRTDSGVHAL------------RQVAHFDL 66 R+ S++ I++ I G HGAGR D V L + + DL Sbjct: 186 RELYPESVEELIKQPIKEAFGGLDAKFHGAGREDVDVRMLGTGRPFVLEVKEPRRRNVDL 245 Query: 67 VREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSY-LYR-IITRQAPLA 124 L + + + +L V ++ R +YR ++ P++ Sbjct: 246 ----------DELEEEINRGGKVEVFDLEFVGREEVEEIKETERHRKVYRALVYSDRPVS 295 Query: 125 LEK 127 EK Sbjct: 296 DEK 298 >gnl|CDD|34728 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]. Length = 383 Score = 26.5 bits (58), Expect = 6.8 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 15 YFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRT 51 +F W RQ SIEKAI L+ GE + R Sbjct: 103 FFEWDRQS--FVTNKSIEKAILLIDGEYRRISKDYRE 137 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.138 0.421 Gapped Lambda K H 0.267 0.0805 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,043,922 Number of extensions: 155850 Number of successful extensions: 416 Number of sequences better than 10.0: 1 Number of HSP's gapped: 388 Number of HSP's successfully gapped: 21 Length of query: 247 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 156 Effective length of database: 4,297,318 Effective search space: 670381608 Effective search space used: 670381608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.2 bits)