RPSBLAST alignment of GI: 254780295 and protein with PDBid: 1vs3

>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8} Length = 249

 Score =  172 bits (437), Expect = 5e-44
 Identities = 84/249 (33%), Positives = 117/249 (46%), Gaps = 6/249 (2%)

Query: 1   MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59
           M R  ++ EY+G+ + G QRQ  G  ++QG +E+A+  +      V  AGRTD+GVHAL 
Sbjct: 1   MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGALPKAV-AAGRTDAGVHALA 59

Query: 60  QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119
              H D+        + +ALN  L     +       V   FHAR  A+ R+Y YRI+ R
Sbjct: 60  MPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAR--EVAPDFHARKDALWRAYRYRILVR 117

Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIR--TIDHFDV 177
             P  L + RA  + + LD E M  A   L+GRH+F  F     +               
Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAE 177

Query: 178 NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237
              G  + +    +SFL  Q+R  VG+L  VG GK     L+  L+  DR+  GP AP  
Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237

Query: 238 GLYFDSVEY 246
           GLYF    Y
Sbjct: 238 GLYFVEAAY 246