RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] (247 letters) >d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Length = 264 Score = 174 bits (441), Expect = 7e-45 Identities = 89/246 (36%), Positives = 128/246 (52%), Gaps = 2/246 (0%) Query: 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60 + + + IEY+GS Y+GWQRQ S+Q +EKA+ V E + V AGRTD+GVH Q Sbjct: 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 62 Query: 61 VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120 V HF+ +NA L + + V FHARFSA R Y Y I + Sbjct: 63 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVK--TVPDDFHARFSATARRYRYIIYNHR 120 Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180 A+ + LD E M AAQ L+G +DFT+FR++ CQ+ +P R + H +V Sbjct: 121 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 180 Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 G + + + A +F+H +R+ VGSL VG + + + L A+DR A EGLY Sbjct: 181 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 240 Query: 241 FDSVEY 246 +V+Y Sbjct: 241 LVAVDY 246 >d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 510 Score = 27.3 bits (59), Expect = 1.2 Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 2/79 (2%) Query: 55 VHALRQVAHFDLVREWVPVILCKALNAYLKISDTIS-ILNLSIVDKQFHARFSAIRRSYL 113 + LR + ++ + + + + L + + + + R Sbjct: 114 IRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAP 173 Query: 114 YRIITRQAPLALEKGRAWL 132 + + A L + R +L Sbjct: 174 FGRADKAANWLL-RARLYL 191 >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 Score = 26.0 bits (56), Expect = 3.3 Identities = 7/27 (25%), Positives = 11/27 (40%) Query: 154 DFTTFRSIHCQASSPIRTIDHFDVNSF 180 + S S + I H D+N+F Sbjct: 8 ELIQLGSPSKAYESSLACIAHIDMNAF 34 >d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 480 Score = 25.0 bits (54), Expect = 6.9 Identities = 10/24 (41%), Positives = 12/24 (50%) Query: 46 HGAGRTDSGVHALRQVAHFDLVRE 69 HGAGR S A RQ + +E Sbjct: 403 HGAGRVLSRKAATRQYRGDRIRQE 426 >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 279 Score = 24.9 bits (54), Expect = 7.2 Identities = 4/23 (17%), Positives = 10/23 (43%) Query: 42 IVVVHGAGRTDSGVHALRQVAHF 64 +V+ HG G + ++ + Sbjct: 8 LVIWHGMGDSCCNPLSMGAIKKM 30 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.138 0.421 Gapped Lambda K H 0.267 0.0637 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 964,758 Number of extensions: 43942 Number of successful extensions: 121 Number of sequences better than 10.0: 1 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 7 Length of query: 247 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 164 Effective length of database: 1,268,006 Effective search space: 207952984 Effective search space used: 207952984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.0 bits)