HHsearch alignment for GI: 254780297 and conserved domain: COG0242

>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis].

Probab=100.00  E-value=0  Score=398.05  Aligned_cols=167  Identities=49%  Similarity=0.884  Sum_probs=160.4

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC-CCCCCCEECCCC
Q ss_conf             9877364576931052121378788899999999998650047642130220144000377316432-334821001644
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPK   79 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~-~~~~~~~~iNP~   79 (170)
T Consensus         1 m~i~~Iv~~~~p~Lr~~a~~V~~~d~~l~~li~dM~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~   80 (168)
T COG0242           1 MAIREIVKYPDPRLRQVAKPVEEVDDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPE   80 (168)
T ss_pred             CCCCCCEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCEEEEEEEECCCCCCCCCCCEEEECCE
T ss_conf             97432110897788303503301599999999999999986799066001149616699999168667676756999999


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHH
Q ss_conf             20100000111000001223210121100000246323585579997297646432700131976853647889999999
Q gi|254780297|r   80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT  159 (170)
Q Consensus        80 I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~  159 (170)
T Consensus        81 I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~  160 (168)
T COG0242          81 IISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLK  160 (168)
T ss_pred             EEECCCCCCCCCCCEEEECCCEEEEECCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEECCHHHHHHHH
T ss_conf             86637760226756686169601462563899999969999999997472557767650000758750113835440688


Q ss_pred             HHHHHHHH
Q ss_conf             99999985
Q gi|254780297|r  160 KKMSKLVQ  167 (170)
Q Consensus       160 ~k~~k~~k  167 (170)
T Consensus       161 ~~~~~~~~  168 (168)
T COG0242         161 KKLKKLKK  168 (168)
T ss_pred             HHHHHHCC
T ss_conf             87787429