HHsearch results for GI: 254780297 and protein with PDBid: 1lme_A
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=0 Score=393.26 Aligned_cols=163 Identities=36% Similarity=0.660 Sum_probs=158.0
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|++++|++||||+||++|+||+.++++++++++||++||++++|+||||||||+++|+||++.++ .+.++|||+|
T Consensus 11 ~~i~~I~~~~dpvLr~~a~~V~~~d~~~~~li~dm~~tm~~~~GvGLAApQIG~~~ri~vi~~~~-----~~~v~iNP~I 85 (176)
T 1lme_A 11 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEI 85 (176)
T ss_dssp CSSCCCCCTTCGGGTSCCBCCCBCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEE
T ss_pred CCEEEEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCC-----CEEEEECCCC
T ss_conf 62687307799698270636898898999999999999985898085301279630399983799-----8689989850
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHH
Q ss_conf 01000001110000012232101211000002463235855799972976464327001319768536478899999999
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~ 160 (170)
++.|++...++|||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||+|||+|||||+||+||+|+.++.++.+
T Consensus 86 ~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~Gilf~Drl~~~~~~~~~k 165 (176)
T 1lme_A 86 LEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRK 165 (176)
T ss_dssp EEECSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC--------
T ss_pred CCCCCCEEEECCCCCCCCCCCCCEEECHHEEEEEECCCCCEEEEEEECCEEEEEEEHHHHHCCEEEEEECCHHHHHHHHH
T ss_conf 36787589831676556990740870040788653589949999997353678688438669985000449878999999
Q ss_pred HHHHHHHH
Q ss_conf 99999850
Q gi|254780297|r 161 KMSKLVQL 168 (170)
Q Consensus 161 k~~k~~k~ 168 (170)
+++|+.|.
T Consensus 166 ~~~k~~r~ 173 (176)
T 1lme_A 166 KLMDIART 173 (176)
T ss_dssp --------
T ss_pred HHHHHHHH
T ss_conf 99999988