HHsearch results for GI: 254780297 and protein with PDBid: 1zxz_A
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=0 Score=383.02 Aligned_cols=161 Identities=32% Similarity=0.493 Sum_probs=147.2
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC----------
Q ss_conf 987736457693105212137878---8899999999998650047642130220144000377316432----------
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA---------- 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~---~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~---------- 67 (170)
|++++|+++|||+||++|++|+.+ ++++++|+++|++||++++||||||||||+++|+||++.++..
T Consensus 1 M~~~~Iv~~gdP~Lr~~a~~V~~~d~~~~~l~~li~~M~~tm~~~~GvGLAApQIGi~~rifvi~~~~~~~~~~~~~~~~ 80 (197)
T 1zxz_A 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEIL 80 (197)
T ss_dssp -CCCCCCCTTSGGGTSCCBCCCTTTTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHH
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCEEEEEEECCCCCCCCCCCHHCC
T ss_conf 97056142899788154710795457889999999999999987899377544538641099998663224558511102
Q ss_pred ----CCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf ----3348210016442010000011100000122321012110000024632358557999729764643270013197
Q gi|254780297|r 68 ----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 68 ----~~~~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
....+.+||||+|+..|+++...+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||||
T Consensus 81 ~~~~~~~~~~v~INP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~V~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 160 (197)
T 1zxz_A 81 AQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDG 160 (197)
T ss_dssp HTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEHHHHHHHHHHHCCCC
T ss_conf 21224567459867716871341566236653679965773887505699885899889999810201446178674288
Q ss_pred EEEEEECCHHHHHHHHHH
Q ss_conf 685364788999999999
Q gi|254780297|r 144 ILFIDHLSRLKRDMITKK 161 (170)
Q Consensus 144 ~lf~drls~~kr~~~~~k 161 (170)
+||+||+++.+++.+++.
T Consensus 161 ~lf~Drl~~~~~~~~~~~ 178 (197)
T 1zxz_A 161 NLYVDKMVPRTFRTVDNL 178 (197)
T ss_dssp CCGGGTBCTTCCEEGGGT
T ss_pred EEEEECCCHHHHHHHHHH
T ss_conf 986751298899999988