HHsearch results for GI: 254780297 and protein with PDBid: 3oca_A
>3oca_A Peptide deformylase; ssgcid, structur genomics, seattle structural genomics center for infectious hydrolase; 2.40A {Ehrlichia chaffeensis}
Probab=100.00 E-value=0 Score=404.00 Aligned_cols=169 Identities=41% Similarity=0.686 Sum_probs=160.0
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCC-----------
Q ss_conf 987736457693105212137878889999999999865004764213022014400037731643233-----------
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR----------- 69 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~----------- 69 (170)
|++++|++||||+||++|+||+.+|+++++|++||++||++++||||||||||+++|+||++.+++...
T Consensus 22 M~vl~Iv~~pdp~Lr~~a~~V~~~d~~l~~li~dM~~Tm~~~~GvGLAApQIG~~~rifvi~~~~~~~~~~~~~~~~~~~ 101 (209)
T 3oca_A 22 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKI 101 (209)
T ss_dssp -CCCCCCCTTCGGGGSCCBCCSCCCHHHHHHHHHHHHHHHHHTCSEEEGGGGTCCBSEEEEEECC--------CCSSCCC
T ss_pred CEEEECCCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 26412432799799485726896898999999999999987899554266639763489997774223321111211112
Q ss_pred ------CCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf ------48210016442010000011100000122321012110000024632358557999729764643270013197
Q gi|254780297|r 70 ------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 70 ------~~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
..+.+||||+|++.|+++..++|||||+||+++.|+||.+|+|+|+|++|+.++.+++||+|||||||+|||+|
T Consensus 102 ~~~~~~~~~~vlINP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G 181 (209)
T 3oca_A 102 EGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNG 181 (209)
T ss_dssp TTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEECCEEEECCCCEEEEEECCCCCCCCCCCCCCHHEEEEEEEEECCCEEEEEEEEHHHHHHHHHHHHHCC
T ss_conf 22114678469986737862765788641444448876666362239999998059199999976454688687684388
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 68536478899999999999998504
Q gi|254780297|r 144 ILFIDHLSRLKRDMITKKMSKLVQLR 169 (170)
Q Consensus 144 ~lf~drls~~kr~~~~~k~~k~~k~k 169 (170)
+||+||+|+++|.++.+|++|+.|..
T Consensus 182 iLf~Drls~~kr~~~~~k~~k~~k~~ 207 (209)
T 3oca_A 182 TVFLKYLSKFKRDFAIEKVKKKERTD 207 (209)
T ss_dssp CCGGGGSCHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 93468489989999999999987422