HHSEARCH alignment of GI: 254780297 and SCOP domain: d1lm4a_

Alignment
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=0  Score=357.83  Aligned_cols=154  Identities=29%  Similarity=0.494  Sum_probs=139.9

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC------------CCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf             9877364576931052121378-78889999999999865004------------7642130220144000377316432
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLVVIDLQDHA   67 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~~------------~GvGLAA~QIG~~~ri~vv~~~~~~   67 (170)
                      |++++|+++|||+||++|.+|+ +++.++++++++|.+||+++            +||||||||||+++|+||++.++..
T Consensus        13 m~i~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~~i~~m~~tm~~~~~~~~~~~m~~~~GvGLAApQIGv~~Rifvi~~~~~~   92 (194)
T d1lm4a_          13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDG   92 (194)
T ss_dssp             CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCS
T ss_pred             EEHHHHHHCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEEECCCCC
T ss_conf             58867641899699379914888889899999999999999877678887522378621342121253352211057322


Q ss_pred             C-CCCCCEECCCCCCCHHHH--HHHHHHHCCCC-CCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf             3-348210016442010000--01110000012-2321012110000024632358557999729764643270013197
Q gi|254780297|r   68 H-RKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG  143 (170)
Q Consensus        68 ~-~~~~~~~iNP~I~~~s~e--~~~~~EGCLS~-Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G  143 (170)
                      . ...++++|||+|+..|.+  +...+|||||+ |++++.|+||.+|+|+|+|++|+.++.+++||+|||||||+|||+|
T Consensus        93 ~~~~~~~vlINP~Ii~~s~~~~~~~~~EGCLS~pp~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G  172 (194)
T d1lm4a_          93 SGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG  172 (194)
T ss_dssp             SSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHEECCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHCCC
T ss_conf             12344300011420320244024521467746410333222212101357863799499999555787899699781088


Q ss_pred             EEEEEECCHHH
Q ss_conf             68536478899
Q gi|254780297|r  144 ILFIDHLSRLK  154 (170)
Q Consensus       144 ~lf~drls~~k  154 (170)
                      +||+||+|+.+
T Consensus       173 ilfiDrl~k~~  183 (194)
T d1lm4a_         173 VMFYDHIDKNH  183 (194)
T ss_dssp             CCGGGGCCSSS
T ss_pred             EEEEEECCCCC
T ss_conf             87687048756


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Staphylococcus aureus [TaxId: 1280]