HHSEARCH alignment of GI: 254780297 and SCOP domain: d1lmea_

Alignment

Probab=100.00  E-value=0  Score=368.48  Aligned_cols=147  Identities=37%  Similarity=0.687  Sum_probs=142.4

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf             98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI   80 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I   80 (170)
                      |.+++|++||||+||++|+||+.+++++++++++|.+||++++|+||||||||+++|+|+++.++     .+.++|||+|
T Consensus         8 ~~i~~I~~~gdp~Lr~~a~~V~~~d~~l~~li~~m~~tm~~~~gvGLAA~QIGi~~ri~vi~~~~-----~~~~~iNP~i   82 (154)
T d1lmea_           8 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEI   82 (154)
T ss_dssp             CSSCCCCCTTCGGGTSCCBCCCBCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEE
T ss_pred             CCEEEEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCC-----CCCCCCCCEE
T ss_conf             50870335699699541738998898999999999998752277213424546321089997899-----8121116446


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCH
Q ss_conf             010000011100000122321012110000024632358557999729764643270013197685364788
Q gi|254780297|r   81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR  152 (170)
Q Consensus        81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~  152 (170)
                      ++.|+++...+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||||+||+||+||
T Consensus        83 ~~~s~~~~~~~EGCLS~P~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gilf~DrlsP  154 (154)
T d1lmea_          83 LEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISP  154 (154)
T ss_dssp             EEECSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC
T ss_pred             EECCCCEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEECCEEHHHHHHHHHHCCEECCEECCC
T ss_conf             622686788515544568850146521358999982489489999931300046167586398888562595

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Thermotoga maritima [TaxId: 2336]