HHSEARCH alignment of GI: 254780297 and SCOP domain: d1lqya_

Alignment
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=362.72  Aligned_cols=158  Identities=31%  Similarity=0.466  Sum_probs=143.8

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHH------------CCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf             987736457693105212137878-88999999999986500------------47642130220144000377316432
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYS------------TDGIGLAAVQIGVLYRLVVIDLQDHA   67 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~~~-~~~~~~li~dm~~tm~~------------~~GvGLAA~QIG~~~ri~vv~~~~~~   67 (170)
                      |++++|++||||+||++|.||+.+ ++++++++++|++||++            .+||||||||||+++|+||++.+++.
T Consensus         2 m~i~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~ii~~l~dtm~~~~~~~~~~~~~~~~GvGLAApQIGi~~rifvi~~~~~~   81 (184)
T d1lqya_           2 ITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDEN   81 (184)
T ss_dssp             CCGGGCCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECTT
T ss_pred             CCHHHHHHCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEEEEEEEEECCCC
T ss_conf             77524644799789373715688887789999999999999967658887512257630341165540025567502222


Q ss_pred             CCCCCCEECCCCCCCHHHHHH--HHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCE
Q ss_conf             334821001644201000001--1100000122-3210121100000246323585579997297646432700131976
Q gi|254780297|r   68 HRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI  144 (170)
Q Consensus        68 ~~~~~~~~iNP~I~~~s~e~~--~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~  144 (170)
                      +...+.++|||+|++.|++..  ..+|||||+| ++++.|.||.+|+|+|+|++|++++.+++||+|||||||+|||+|+
T Consensus        82 ~~~~~~v~iNP~I~~~s~e~~~~~~~EGCLS~P~~~~g~v~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHE~DHL~Gi  161 (184)
T d1lqya_          82 GTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGI  161 (184)
T ss_dssp             SCEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCCE
T ss_conf             23331000232034315542100023566465533330102421258999817997999999616778998986700898


Q ss_pred             EEEEECCHHHHHHH
Q ss_conf             85364788999999
Q gi|254780297|r  145 LFIDHLSRLKRDMI  158 (170)
Q Consensus       145 lf~drls~~kr~~~  158 (170)
                      ||+||+|+.++...
T Consensus       162 lf~Drl~~~~~~~~  175 (184)
T d1lqya_         162 MFYDRINPADPFQV  175 (184)
T ss_dssp             CGGGGBCSSCTTCC
T ss_pred             EEEEECCCCCCCCC
T ss_conf             76573586655568


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Bacillus stearothermophilus [TaxId: 1422]