HHSEARCH alignment of GI: 254780297 and SCOP domain: d1rl4a_

Alignment
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=0  Score=378.53  Aligned_cols=164  Identities=32%  Similarity=0.632  Sum_probs=155.8

Q ss_pred             CHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-CCCCCEECCCCCCCH
Q ss_conf             3645769310521213787888999999999986500476421302201440003773164323-348210016442010
Q gi|254780297|r    5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITF   83 (170)
Q Consensus         5 ~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-~~~~~~~iNP~I~~~   83 (170)
                      +|++||||+||++|+||+.+++++++++++|++||++++||||||||||+++|+||++..+... ...+.+++||.|++.
T Consensus         1 KIv~~~dpiLr~~~~~v~~~~~~~~~li~~m~~tm~~~~gvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~~inp~i~~~   80 (165)
T d1rl4a_           1 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQ   80 (165)
T ss_dssp             CCCCTTCGGGGSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEE
T ss_pred             CEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHEEEECCCCCCCCCCEEEEEECCCCHHH
T ss_conf             96667987996507128989989999999999986204760535111214212367614432333420367631430221


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             00001110000012232101211000002463235855799972976464327001319768536478899999999999
Q gi|254780297|r   84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS  163 (170)
Q Consensus        84 s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k~~  163 (170)
                      |+++..++|||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||||||+|||||++|+||+|+++|+++.+|++
T Consensus        81 ~~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~G~~Ar~~QHEiDHL~Gilf~Dr~~~~~~~~~~kkl~  160 (165)
T d1rl4a_          81 SLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLN  160 (165)
T ss_dssp             CSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCEEECCEEEEEEEHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf             25156412444547886432222355433212116751010774223354153458768874200379999999999999


Q ss_pred             HHHHH
Q ss_conf             99850
Q gi|254780297|r  164 KLVQL  168 (170)
Q Consensus       164 k~~k~  168 (170)
                      |+.|.
T Consensus       161 k~~k~  165 (165)
T d1rl4a_         161 ELIRD  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHCC
T ss_conf             98529


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]