HHSEARCH alignment of GI: 254780297 and SCOP domain: d1y6ha_

Alignment
>d1y6ha_ d.167.1.1 (A:) Peptide deformylase {Leptospira interrogans [TaxId: 173]}
Probab=100.00  E-value=0  Score=381.80  Aligned_cols=167  Identities=33%  Similarity=0.555  Sum_probs=155.3

Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-----CCCCC
Q ss_conf             87736457693105212137878---88999999999986500476421302201440003773164323-----34821
Q gi|254780297|r    2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-----RKNPM   73 (170)
Q Consensus         2 ~~~~Iv~~~dp~L~~~~~~v~~~---~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-----~~~~~   73 (170)
                      |+|+|++||||+||++|+||+.+   ++++++++++|++||++++|+||||||||+++|+||++.+++..     ...+.
T Consensus         1 ai~~I~~~gdp~Lr~~a~~v~~~d~~~~~~~~li~dm~~tm~~~~GvGLAApQIGi~~ri~vi~~~~~~~~~~~~~~~~~   80 (177)
T d1y6ha_           1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER   80 (177)
T ss_dssp             CCCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCE
T ss_pred             CCCCHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf             96823028997996237117831258889999999999998763864513143101151999624755456666443214


Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHH
Q ss_conf             00164420100000111000001223210121100000246323585579997297646432700131976853647889
Q gi|254780297|r   74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL  153 (170)
Q Consensus        74 ~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~  153 (170)
                      ++|||+|++.|+++..+||||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||||||+|||||+||+||+++.
T Consensus        81 v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~Dr~~~~  160 (177)
T d1y6ha_          81 IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT  160 (177)
T ss_dssp             EEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCT
T ss_pred             EECCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHCCEEHHHHCCHH
T ss_conf             40350898732515786315767688003542441235675577885458996628899999988972899026724843


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999850
Q gi|254780297|r  154 KRDMITKKMSKLVQL  168 (170)
Q Consensus       154 kr~~~~~k~~k~~k~  168 (170)
                      ++..+.+++++..+.
T Consensus       161 k~~~~~~~l~~~~~~  175 (177)
T d1y6ha_         161 KLFGFNETLDSSHNV  175 (177)
T ss_dssp             TSEEEHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             367789999987641


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Peptide deformylase
superfamily: Peptide deformylase
family: Peptide deformylase
domain: Peptide deformylase
species: Leptospira interrogans [TaxId: 173]