Query gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 111 out of 3172
Neff 6.1
Searched_HMMs 13730
Date Wed Jun 1 02:32:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780297.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xeoa1 d.167.1.1 (A:1-164) Pe 100.0 0 0 388.8 7.1 164 2-168 1-164 (164)
2 d1ix1a_ d.167.1.1 (A:) Peptide 100.0 0 0 388.2 6.8 166 2-169 1-166 (169)
3 d1rl4a_ d.167.1.1 (A:) Peptide 100.0 0 0 378.5 5.7 164 5-168 1-165 (165)
4 d1y6ha_ d.167.1.1 (A:) Peptide 100.0 0 0 381.8 0.3 167 2-168 1-175 (177)
5 d1v3ya_ d.167.1.1 (A:) Peptide 100.0 0 0 373.9 5.4 164 2-167 1-177 (182)
6 d1lmea_ d.167.1.1 (A:) Peptide 100.0 0 0 368.5 3.6 147 1-152 8-154 (154)
7 d1lqya_ d.167.1.1 (A:) Peptide 100.0 0 0 362.7 3.8 158 1-158 2-175 (184)
8 d1lm4a_ d.167.1.1 (A:) Peptide 100.0 0 0 357.8 4.0 154 1-154 13-183 (194)
9 d1lm6a_ d.167.1.1 (A:) Peptide 100.0 0 0 361.1 -1.4 157 1-157 14-194 (202)
10 d1ytqa1 b.11.1.1 (A:14-103) be 15.9 15 0.0011 15.5 0.0 24 76-99 1-29 (90)
No 1
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=388.82 Aligned_cols=164 Identities=42% Similarity=0.734 Sum_probs=155.6
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCCC
Q ss_conf 87736457693105212137878889999999999865004764213022014400037731643233482100164420
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I~ 81 (170)
++++|++||||+||++|.||+.+|++++++++||++||++++|+||||||||+++|+||++..+.. +.+.+||||+|+
T Consensus 1 ~v~~I~~~~dp~Lr~~a~~v~~~~~~~~~li~dm~~tm~~~~GvGLAApQIG~~~rifvv~~~~~~--~~~~v~iNP~I~ 78 (164)
T d1xeoa1 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENR--DERLVLINPELL 78 (164)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCCTTS--CCCEEEEEEEEE
T ss_pred CCCCHHCCCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCEEEEEEECCC--CCEEEECCCEEE
T ss_conf 955410379869968373589799899999999999764227610130220222045899740256--743884472776
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHH
Q ss_conf 10000011100000122321012110000024632358557999729764643270013197685364788999999999
Q gi|254780297|r 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 (170)
Q Consensus 82 ~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k 161 (170)
+.|++. .++|||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||+|||+|||+|+||+||+|+.+|.++.+|
T Consensus 79 ~~~~~~-~~~EgCLS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~~QHEiDHL~Gilf~Dr~~~~~~~~~~kk 157 (164)
T d1xeoa1 79 EKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQK 157 (164)
T ss_dssp EEECCB-CCEECCTTSTTCCEECCBCSEEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHH
T ss_pred EECCEE-EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEEHHHHHHHHHCCEEHHHHCCHHHHHHHHHH
T ss_conf 312214-3048864212112445543278999986899899999954002148777898688923663699899999999
Q ss_pred HHHHHHH
Q ss_conf 9999850
Q gi|254780297|r 162 MSKLVQL 168 (170)
Q Consensus 162 ~~k~~k~ 168 (170)
++|+.|.
T Consensus 158 ~~k~~rl 164 (164)
T d1xeoa1 158 VEKLDRL 164 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHCC
T ss_conf 9986459
No 2
>d1ix1a_ d.167.1.1 (A:) Peptide deformylase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=0 Score=388.20 Aligned_cols=166 Identities=44% Similarity=0.773 Sum_probs=159.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCCC
Q ss_conf 87736457693105212137878889999999999865004764213022014400037731643233482100164420
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I~ 81 (170)
|+++|++||||+||++|.||+.+++++++++++|++||++++||||||||||+++|+||++.++.. ..+.+||||+|+
T Consensus 1 ail~Iv~~~dp~Lr~~~~~v~~~~~~~~~li~dM~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~v~iNP~I~ 78 (169)
T d1ix1a_ 1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFE 78 (169)
T ss_dssp CCCCCCCTTCGGGGCCCBCCSCCCHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEECSSSS--CCEEEEEEEEEE
T ss_pred CCCCEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCEEEEECCCCC--CCCEEEECCEEE
T ss_conf 920262279979958362389699899999999999876536636563011101455888656445--885486424054
Q ss_pred CHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHH
Q ss_conf 10000011100000122321012110000024632358557999729764643270013197685364788999999999
Q gi|254780297|r 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 (170)
Q Consensus 82 ~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k 161 (170)
+.|+++...+|||||+||+++.|.||.+|+|+|+|.+|++++.+++||+|||+|||+|||||+||+||+|+.+|.++.+|
T Consensus 79 ~~s~~~~~~~EgClS~Pg~~~~V~R~~~I~v~y~d~~G~~~~~~~~g~~Ar~iQHEiDHL~G~lf~Dr~~~~~~~~~~kk 158 (169)
T d1ix1a_ 79 PLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKK 158 (169)
T ss_dssp ESCSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEEEHHHHHHHHHCCEEHHHHCCHHHHHHHHHH
T ss_conf 04430798617643015644332542016888761469588999966014303236587589923663599899999999
Q ss_pred HHHHHHHC
Q ss_conf 99998504
Q gi|254780297|r 162 MSKLVQLR 169 (170)
Q Consensus 162 ~~k~~k~k 169 (170)
++|+.|.+
T Consensus 159 ~~k~~k~~ 166 (169)
T d1ix1a_ 159 LEKQHRQQ 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99998766
No 3
>d1rl4a_ d.167.1.1 (A:) Peptide deformylase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00 E-value=0 Score=378.53 Aligned_cols=164 Identities=32% Similarity=0.632 Sum_probs=155.8
Q ss_pred CHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-CCCCCEECCCCCCCH
Q ss_conf 3645769310521213787888999999999986500476421302201440003773164323-348210016442010
Q gi|254780297|r 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-RKNPMVFINPKIITF 83 (170)
Q Consensus 5 ~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-~~~~~~~iNP~I~~~ 83 (170)
+|++||||+||++|+||+.+++++++++++|++||++++||||||||||+++|+||++..+... ...+.+++||.|++.
T Consensus 1 KIv~~~dpiLr~~~~~v~~~~~~~~~li~~m~~tm~~~~gvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~~inp~i~~~ 80 (165)
T d1rl4a_ 1 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQ 80 (165)
T ss_dssp CCCCTTCGGGGSCCBCCCCCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEE
T ss_pred CEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCEEEEEHHEEEECCCCCCCCCCEEEEEECCCCHHH
T ss_conf 96667987996507128989989999999999986204760535111214212367614432333420367631430221
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 00001110000012232101211000002463235855799972976464327001319768536478899999999999
Q gi|254780297|r 84 SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 (170)
Q Consensus 84 s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~~k~~ 163 (170)
|+++..++|||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||||||+|||||++|+||+|+++|+++.+|++
T Consensus 81 ~~~~~~~~EgCLS~p~~~~~V~R~~~I~v~~~d~~g~~~~~~~~G~~Ar~~QHEiDHL~Gilf~Dr~~~~~~~~~~kkl~ 160 (165)
T d1rl4a_ 81 SLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLN 160 (165)
T ss_dssp CSCEEEEEECCTTSTTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCEEECCEEEEEEEHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf 25156412444547886432222355433212116751010774223354153458768874200379999999999999
Q ss_pred HHHHH
Q ss_conf 99850
Q gi|254780297|r 164 KLVQL 168 (170)
Q Consensus 164 k~~k~ 168 (170)
|+.|.
T Consensus 161 k~~k~ 165 (165)
T d1rl4a_ 161 ELIRD 165 (165)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 98529
No 4
>d1y6ha_ d.167.1.1 (A:) Peptide deformylase {Leptospira interrogans [TaxId: 173]}
Probab=100.00 E-value=0 Score=381.80 Aligned_cols=167 Identities=33% Similarity=0.555 Sum_probs=155.3
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-----CCCCC
Q ss_conf 87736457693105212137878---88999999999986500476421302201440003773164323-----34821
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-----RKNPM 73 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~---~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-----~~~~~ 73 (170)
|+|+|++||||+||++|+||+.+ ++++++++++|++||++++|+||||||||+++|+||++.+++.. ...+.
T Consensus 1 ai~~I~~~gdp~Lr~~a~~v~~~d~~~~~~~~li~dm~~tm~~~~GvGLAApQIGi~~ri~vi~~~~~~~~~~~~~~~~~ 80 (177)
T d1y6ha_ 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER 80 (177)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCE
T ss_pred CCCCHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf 96823028997996237117831258889999999999998763864513143101151999624755456666443214
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHH
Q ss_conf 00164420100000111000001223210121100000246323585579997297646432700131976853647889
Q gi|254780297|r 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 (170)
Q Consensus 74 ~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~ 153 (170)
++|||+|++.|+++..+||||||+||+++.|+||.+|+|+|+|.+|++++.+++||+|||||||+|||||+||+||+++.
T Consensus 81 v~iNP~I~~~s~~~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~iQHEiDHL~G~l~~Dr~~~~ 160 (177)
T d1y6ha_ 81 IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT 160 (177)
T ss_dssp EEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCT
T ss_pred EECCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHCCEEHHHHCCHH
T ss_conf 40350898732515786315767688003542441235675577885458996628899999988972899026724843
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999850
Q gi|254780297|r 154 KRDMITKKMSKLVQL 168 (170)
Q Consensus 154 kr~~~~~k~~k~~k~ 168 (170)
++..+.+++++..+.
T Consensus 161 k~~~~~~~l~~~~~~ 175 (177)
T d1y6ha_ 161 KLFGFNETLDSSHNV 175 (177)
T ss_dssp TSEEEHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 367789999987641
No 5
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=373.87 Aligned_cols=164 Identities=36% Similarity=0.624 Sum_probs=145.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCC-----------CC
Q ss_conf 8773645769310521213787888999999999986500476421302201440003773164323-----------34
Q gi|254780297|r 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH-----------RK 70 (170)
Q Consensus 2 ~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~-----------~~ 70 (170)
|+++|++||||+||++|.||+.++ +++++++||++||++++|+||||||||+++|+||++...... ..
T Consensus 1 Mil~I~~~~dpiLr~~~~~v~~~~-~l~~li~dM~~tm~~~~GvGLAApQIGi~~rifvi~~~~~~~~~~~~~~~~~~~~ 79 (182)
T d1v3ya_ 1 MVYPIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVR 79 (182)
T ss_dssp CCCCCCCTTCGGGGSCCBCCCCCT-THHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCS
T ss_pred CEECCCCCCCHHHHCCCEECCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHCCCCCCCCC
T ss_conf 907004289968957183578843-6999999999999876424733102275235999971565631000254212467
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHCCCCCCCC-HHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEE
Q ss_conf 8210016442010000011100000122321-012110000024632358557999729764643270013197685364
Q gi|254780297|r 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYR-ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 (170)
Q Consensus 71 ~~~~~iNP~I~~~s~e~~~~~EGCLS~Pg~~-~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~dr 149 (170)
.+++++||+|+. |+++..+||||||+||++ +.|+||.+|+|+|+|++|+.++.+++||+|||||||+|||||+||+||
T Consensus 80 ~~~~~inp~i~~-~~~~~~~~EGCLS~Pg~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~l~~Dr 158 (182)
T d1v3ya_ 80 RVYVVANPVITY-REGLVEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFER 158 (182)
T ss_dssp CEEEEEEEEEEE-EECCEEEEECCTTSTTCCEEEEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGG
T ss_pred CEEEEECCEEEE-ECCEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEECCEEEEEEEHHHHHCCEEEHHH
T ss_conf 439982969887-3113530146567898503687667889999996589789999971778998871175589951442
Q ss_pred CCHHHHHHHHHHHH-HHHH
Q ss_conf 78899999999999-9985
Q gi|254780297|r 150 LSRLKRDMITKKMS-KLVQ 167 (170)
Q Consensus 150 ls~~kr~~~~~k~~-k~~k 167 (170)
+|+.+|+++.++.+ +++|
T Consensus 159 l~~~k~~~~~~~~~~~l~~ 177 (182)
T d1v3ya_ 159 LPKPKREAFLEANRAELVR 177 (182)
T ss_dssp SCHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8998999999999999999
No 6
>d1lmea_ d.167.1.1 (A:) Peptide deformylase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=368.48 Aligned_cols=147 Identities=37% Similarity=0.687 Sum_probs=142.4
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCCCCCCEECCCCC
Q ss_conf 98773645769310521213787888999999999986500476421302201440003773164323348210016442
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~~~~~~~iNP~I 80 (170)
|.+++|++||||+||++|+||+.+++++++++++|.+||++++|+||||||||+++|+|+++.++ .+.++|||+|
T Consensus 8 ~~i~~I~~~gdp~Lr~~a~~V~~~d~~l~~li~~m~~tm~~~~gvGLAA~QIGi~~ri~vi~~~~-----~~~~~iNP~i 82 (154)
T d1lmea_ 8 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEI 82 (154)
T ss_dssp CSSCCCCCTTCGGGTSCCBCCCBCSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEE
T ss_pred CCEEEEEECCCHHHHCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEECCC-----CCCCCCCCEE
T ss_conf 50870335699699541738998898999999999998752277213424546321089997899-----8121116446
Q ss_pred CCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCH
Q ss_conf 010000011100000122321012110000024632358557999729764643270013197685364788
Q gi|254780297|r 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 (170)
Q Consensus 81 ~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~ 152 (170)
++.|+++...+|||||+||+++.|+||.+|+|+|+|++|++++.+++||+|||||||+|||||+||+||+||
T Consensus 83 ~~~s~~~~~~~EGCLS~P~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~Gilf~DrlsP 154 (154)
T d1lmea_ 83 LEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISP 154 (154)
T ss_dssp EEECSCEEEEEECCTTSTTCCEEEEEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC
T ss_pred EECCCCEEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCCEEEEEEECCEEHHHHHHHHHHCCEECCEECCC
T ss_conf 622686788515544568850146521358999982489489999931300046167586398888562595
No 7
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=0 Score=362.72 Aligned_cols=158 Identities=31% Similarity=0.466 Sum_probs=143.8
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHH------------CCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 987736457693105212137878-88999999999986500------------47642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYS------------TDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~-~~~~~~li~dm~~tm~~------------~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|.||+.+ ++++++++++|++||++ .+||||||||||+++|+||++.+++.
T Consensus 2 m~i~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~ii~~l~dtm~~~~~~~~~~~~~~~~GvGLAApQIGi~~rifvi~~~~~~ 81 (184)
T d1lqya_ 2 ITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQINVSKRMIAVHVTDEN 81 (184)
T ss_dssp CCGGGCCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECTT
T ss_pred CCHHHHHHCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEEEEEEEEEECCCC
T ss_conf 77524644799789373715688887789999999999999967658887512257630341165540025567502222
Q ss_pred CCCCCCEECCCCCCCHHHHHH--HHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCE
Q ss_conf 334821001644201000001--1100000122-3210121100000246323585579997297646432700131976
Q gi|254780297|r 68 HRKNPMVFINPKIITFSDDFS--VYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 (170)
Q Consensus 68 ~~~~~~~~iNP~I~~~s~e~~--~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~ 144 (170)
+...+.++|||+|++.|++.. ..+|||||+| ++++.|.||.+|+|+|+|++|++++.+++||+|||||||+|||+|+
T Consensus 82 ~~~~~~v~iNP~I~~~s~e~~~~~~~EGCLS~P~~~~g~v~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHE~DHL~Gi 161 (184)
T d1lqya_ 82 GTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGI 161 (184)
T ss_dssp SCEEEEEEEEEEEEEECSSEEEETTCCCCTTCCSCCCSCBCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHCCCE
T ss_conf 23331000232034315542100023566465533330102421258999817997999999616778998986700898
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 85364788999999
Q gi|254780297|r 145 LFIDHLSRLKRDMI 158 (170)
Q Consensus 145 lf~drls~~kr~~~ 158 (170)
||+||+|+.++...
T Consensus 162 lf~Drl~~~~~~~~ 175 (184)
T d1lqya_ 162 MFYDRINPADPFQV 175 (184)
T ss_dssp CGGGGBCSSCTTCC
T ss_pred EEEEECCCCCCCCC
T ss_conf 76573586655568
No 8
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=0 Score=357.83 Aligned_cols=154 Identities=29% Similarity=0.494 Sum_probs=139.9
Q ss_pred CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC------------CCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 9877364576931052121378-78889999999999865004------------7642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~~------------~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|+++|||+||++|.+|+ +++.++++++++|.+||+++ +||||||||||+++|+||++.++..
T Consensus 13 m~i~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~~i~~m~~tm~~~~~~~~~~~m~~~~GvGLAApQIGv~~Rifvi~~~~~~ 92 (194)
T d1lm4a_ 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDG 92 (194)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCS
T ss_pred EEHHHHHHCCCHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEEECCCCC
T ss_conf 58867641899699379914888889899999999999999877678887522378621342121253352211057322
Q ss_pred C-CCCCCEECCCCCCCHHHH--HHHHHHHCCCC-CCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf 3-348210016442010000--01110000012-2321012110000024632358557999729764643270013197
Q gi|254780297|r 68 H-RKNPMVFINPKIITFSDD--FSVYQEGCLSI-PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 68 ~-~~~~~~~iNP~I~~~s~e--~~~~~EGCLS~-Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
. ...++++|||+|+..|.+ +...+|||||+ |++++.|+||.+|+|+|+|++|+.++.+++||+|||||||+|||+|
T Consensus 93 ~~~~~~~vlINP~Ii~~s~~~~~~~~~EGCLS~pp~~~~~V~R~~~I~v~y~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G 172 (194)
T d1lm4a_ 93 SGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG 172 (194)
T ss_dssp SSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHEECCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHCCC
T ss_conf 12344300011420320244024521467746410333222212101357863799499999555787899699781088
Q ss_pred EEEEEECCHHH
Q ss_conf 68536478899
Q gi|254780297|r 144 ILFIDHLSRLK 154 (170)
Q Consensus 144 ~lf~drls~~k 154 (170)
+||+||+|+.+
T Consensus 173 ilfiDrl~k~~ 183 (194)
T d1lm4a_ 173 VMFYDHIDKNH 183 (194)
T ss_dssp CCGGGGCCSSS
T ss_pred EEEEEECCCCC
T ss_conf 87687048756
No 9
>d1lm6a_ d.167.1.1 (A:) Peptide deformylase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=100.00 E-value=0 Score=361.06 Aligned_cols=157 Identities=29% Similarity=0.406 Sum_probs=134.8
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHH-HHHHHHH------------HHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 987736457693105212137878889-9999999------------998650047642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDN------------MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~-~~~li~d------------m~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|+++|||+||++|+||+.+.++ ...++++ |.+||++++||||||||||+++|+||++.++..
T Consensus 14 m~m~~Iv~~g~p~Lr~~a~~V~~~~~~~~~~~~~~l~~~l~~~~d~~m~~tm~~~~GvGLAApQIGi~~Rifvv~~~~~~ 93 (202)
T d1lm6a_ 14 IDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIV 93 (202)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC--
T ss_pred CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCCCCEEEEECCCCH
T ss_conf 71755642799899088850588875788887899999999610478999998667852111331444338999847605
Q ss_pred C--------CCCCCEECCCCCCCHHHH--HHHHHHHCCCCC-CCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEE
Q ss_conf 3--------348210016442010000--011100000122-32101211000002463235855799972976464327
Q gi|254780297|r 68 H--------RKNPMVFINPKIITFSDD--FSVYQEGCLSIP-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 (170)
Q Consensus 68 ~--------~~~~~~~iNP~I~~~s~e--~~~~~EGCLS~P-g~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QH 136 (170)
. ...+.+||||+|++.|.+ ....+|||||+| |+++.|+||.+|+|+|+|.+|++++.+++||+||||||
T Consensus 94 ~~~~~~~~~~~~~~v~INP~Ii~~s~~~~~~~~~EGCLSvP~~~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QH 173 (202)
T d1lm6a_ 94 EEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQH 173 (202)
T ss_dssp ---------CCEEEEEEEEEEEEECSSEEECTTCCCCTTCCSCCCSCBCEESCEEEEEECTTSCEEEEEECHHHHHHHHH
T ss_pred HHHCCCCCCCCCCEEEECCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHCEEEEEEECCCCCEEEEEEECHHHHHHHH
T ss_conf 53001222356650564143112102312552146873665554122222110136887489976999992566888978
Q ss_pred EHHHHCCEEEEEECCHHHHHH
Q ss_conf 001319768536478899999
Q gi|254780297|r 137 ELDHLNGILFIDHLSRLKRDM 157 (170)
Q Consensus 137 EiDHL~G~lf~drls~~kr~~ 157 (170)
|+|||||+||+||+|+.++..
T Consensus 174 EiDHL~G~lf~Drl~~~~~~~ 194 (202)
T d1lm6a_ 174 EIDHINGIMFYDRINEKDPFA 194 (202)
T ss_dssp HHHHHTTCCGGGGBCSSCTTC
T ss_pred HHHHHCCEEEHHHCCCCCHHH
T ss_conf 878418873043038454014
No 10
>d1ytqa1 b.11.1.1 (A:14-103) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.94 E-value=15 Score=15.49 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=13.9
Q ss_pred CCCCCCCHHHH-----HHHHHHHCCCCCC
Q ss_conf 16442010000-----0111000001223
Q gi|254780297|r 76 INPKIITFSDD-----FSVYQEGCLSIPD 99 (170)
Q Consensus 76 iNP~I~~~s~e-----~~~~~EGCLS~Pg 99 (170)
+||+|+-++.+ .....+.|.+++.
T Consensus 1 ~~pkI~lye~~~f~G~~~~~~~d~~~l~~ 29 (90)
T d1ytqa1 1 LNPKIIIFEQENFQGHSHELNGPCPNLKE 29 (90)
T ss_dssp CCCEEEEESSTTSCSCEEEESSCBSCGGG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCHHH
T ss_conf 99879998479995537997468888446
Done!