BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] (170 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 174 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E +++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43] gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43] Length = 172 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 95/169 (56%), Positives = 127/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLV+ PDPILR+ S P+E++++++ ID+MLE MY GIGLAA+Q+GV RL+V Sbjct: 1 MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K+P VFINP+++ D SVY+EGCLSIPDY ADV+R ITV+Y+ + + Sbjct: 61 IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169 >gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503] gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503] Length = 170 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 81/164 (49%), Positives = 115/164 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V PDP LR +S P++ ++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP I + D + YQEGCLS+PDY +++R A TV Y+D + Sbjct: 61 MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ + Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164 >gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU] gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900] gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|294838986|ref|ZP_06783669.1| peptide deformylase [Acinetobacter sp. 6013113] gi|294842464|ref|ZP_06787147.1| peptide deformylase [Acinetobacter sp. 6014059] gi|294858778|ref|ZP_06796547.1| peptide deformylase [Acinetobacter sp. 6013150] gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059] gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii AYE] gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606] gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2] gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715] Length = 176 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1] gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1] Length = 177 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 90/169 (53%), Positives = 128/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV PDP+LR+VS+P+E+++ + +MLE MY GIGLAA+Q+G R++V Sbjct: 1 MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + KNP VFINP+I++ SD S ++EGCLSIPDY A+V+R A +TV+Y+D + + Sbjct: 61 LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K KL + R Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169 >gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48] gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48] Length = 168 Score = 164 bits (414), Expect = 4e-39, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii SDF] gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter baumannii] Length = 176 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR + +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168 >gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 175 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 92/169 (54%), Positives = 121/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1] gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1] Length = 168 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234] Length = 174 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 100/169 (59%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPKI+ S++ SVY+EGCLSIPDY A+V+R A I V Y+D + + Sbjct: 61 LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K + R Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169 >gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619] gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619] Length = 168 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19] gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33] gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94] gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99] gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94] gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33] gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99] gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1] gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19] gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292] gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870] gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94] gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33] gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99] gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1] gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9] gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28] gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90] Length = 175 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2] gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2] Length = 175 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13] gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13] gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653] gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13] gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653] Length = 175 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 90/169 (53%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +FINP I+ SD+ S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 174 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 1 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 61 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169 >gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330] gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365] gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445] gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo] gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A] gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915] gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330] gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840] gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445] gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo] gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A] gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915] Length = 187 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181 >gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145] gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145] Length = 176 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL ++ + PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSEN--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R+ Sbjct: 119 AFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168 >gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 176 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 95/169 (56%), Positives = 127/169 (75%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG RL+V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL + + Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLARDK 169 >gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1] gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1] Length = 175 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 118/169 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047] Length = 168 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR + PI ++ I L D+MLE MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+VFINP++ D F EGCLS+P + V+R I VR D N + Sbjct: 61 IDVSED--KSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DG+LA C+QHE+DHL+G LF+D+LS LKR I KK+ K+ + R Sbjct: 119 TFEIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167 >gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440] gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1] gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440] gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1] gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1] Length = 168 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + + D YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1] gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1] Length = 176 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614] gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614] Length = 202 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 93/168 (55%), Positives = 121/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP+LR V P+ ++ D+ L D+MLE MY GIGLAA QIG+L R+ V Sbjct: 31 MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINPKI+ SDD SVYQEGCLSIPDY +V+R A +TV++++ Sbjct: 91 LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K ++ Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198 >gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024] gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024] gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2] Length = 176 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + +PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSE--SKDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2] gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2] Length = 168 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 118/169 (69%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M E MY+ GIGLAA Q+ V +L+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + ++ PMVFINP+I +++ + Y+EGCLS+P + V R A + + +D + Sbjct: 61 MDLSEDHNK--PMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + + Sbjct: 119 AFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167 >gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021] gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 178 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 130/169 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS P+E I++DI L D+MLE MY GIGLAA+QIGV RL+V Sbjct: 5 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P+VFINPK++ S++ SVY+EGCLSIPDY A+V+R A ITV Y+D + Sbjct: 65 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K + R Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173 >gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202] Length = 176 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+VFINPKI ++D Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1] gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1] gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1] gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1] Length = 175 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 89/169 (52%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P +F+NP I+ SD S Y+EGCLSIPDY A+V+R A + V Y D + + Sbjct: 61 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL R Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169 >gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164] gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164] Length = 176 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI ++D Y+EGCLS+P V+R + + + ++ Sbjct: 61 MDLSEE--KNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ KLV+ R Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167 >gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3] gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3] Length = 168 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+E ++ + LIDNMLE MY+ GIGLAA Q+ V RL+V Sbjct: 1 MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ PM+FINP++ D Y EGCLS+P + +V R I V + + + Sbjct: 61 LDTSENRDS--PMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 119 AFSLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1] gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8] gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E] Length = 184 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4] gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4] gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169] gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1] gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1] gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1] gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7] gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72] gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1] Length = 184 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR +++P+ + + LI++M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL +P VFINPK+ D+ S YQEGCLS+P+ ++R + + + +D + Q Sbjct: 61 MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLLA C+QHE+DHLNG LF+D+LS LK+ K+ K ++ R+ Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170 >gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881] gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881] Length = 168 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 118/169 (69%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P+EK++ ++ LID+M+E MY GIGLAA Q+ V RL+V Sbjct: 1 MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P V+INP+I +D+ + Y+EGCLS+P + VKR+A + + +D + Sbjct: 61 MDLSEERNE--PKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + + Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167 >gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506] Length = 173 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 87/169 (51%), Positives = 124/169 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S P+ +++ + D+MLE MY GIGLAA+Q+G R++ Sbjct: 1 MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+ + + Sbjct: 61 IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K + + Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169 >gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624] Length = 176 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +M E MY+ GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI +++ Y+EGCLS+P V R + + + ++ Q Sbjct: 61 MDLSE--SKDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHL G LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168 >gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++++PDP LR V+ P+ +++ DI L D+MLE MY GIGLAA Q+GV R+VV Sbjct: 1 MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P+V INP+I+ + + CLSIP + DV+R+ I R +D + Sbjct: 61 MDLAEE-GARQPLVLINPEILDREGAATGQEG-CLSIPGFYEDVERAERIRFRALDREGR 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL+A C+QHE+DHL+G LF+D+LS LKR I +K+ KLV+ Sbjct: 119 PWEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166 >gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501] gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501] gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166] Length = 168 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +D YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSEDRSE--PRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ + + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKIHRQQ 167 >gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+ S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 177 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 72/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ FPDP LR + P+E ++ +I L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D P V INP+I+ S + + + CLS+P + V+R+ I VR + + + Sbjct: 61 ADVSDDQSE--PHVLINPEILETSGEEEMDEG-CLSVPGFYEKVQRADRIRVRALGRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEKQ 162 >gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 213 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 46 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 105 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 106 MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 163 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 164 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 212 >gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11] gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11] Length = 189 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 96/168 (57%), Positives = 124/168 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++ PDP+LR V PIEK++++ + L D+MLE MY GIGLAA Q+G+L R+ V Sbjct: 18 MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K PMVFINP+II + D+ SVYQEGCLSIPDY DV+R A + V++MD Sbjct: 78 LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K +L Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185 >gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71] gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71] Length = 168 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+E ++ D+ LIDNM+E MY GIGLAA Q+ V RL+V Sbjct: 1 MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++ R PMVFINP++ D Y EGCLS+P + +V R + V + + + Sbjct: 61 LDISEN--RDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGL A CLQHE+DHL+G LF+D++S LKR+ I K+ K +LR Sbjct: 119 SFSQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167 >gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 175 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 89/168 (52%), Positives = 119/168 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+VS+P+E+ + + +M + MY GIGLAA+Q+G R++V Sbjct: 1 MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P VFINP+I+ +D+ S Y+EGCLSIPDY A+V+R A I V Y D + + Sbjct: 61 IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK KL Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQ 168 >gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium leguminosarum bv. viciae 3841] Length = 171 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE+++SD+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5] gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5] Length = 171 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 84/168 (50%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LRRVS P+EKI S++ L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 1 MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P VFINP+I++ S+D +VY+EGCLSIP+Y +V+R A + VR+MD + Sbjct: 61 MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K +L Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168 >gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107] gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107] Length = 169 Score = 161 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR V++P+ +++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+VFINP+I ++ S Y EGCLS+P + V+R I V+ +D Sbjct: 61 IDVSED--KSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA C+QHELDHLNG LF+DH+S KR I K+ K + Sbjct: 119 AFELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEKKHK 165 >gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5] Length = 171 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01] gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01] Length = 168 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + R Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167 >gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp] gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp] Length = 168 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P++ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + R Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167 >gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct] Length = 169 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046] Length = 177 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR ++ P+E++ +I L +M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL +H + P+VFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 MDLSEH--KDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ KL + R Sbjct: 119 AFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167 >gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase) [Acinetobacter sp. ATCC 27244] gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 176 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ +I L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ +++ Y+EGCLS+P V+R + + + ++ Q Sbjct: 61 MDLSEE--KNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|330806738|ref|YP_004351200.1| Peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 168 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ T +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSEDRSE--PRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166 >gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10] gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10] Length = 174 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 113/170 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDPIL+ VS+P+++++ D+ L+D+ML+ MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P F+NP + SD Y+EGCLS+P +++R I ++Y+D + Sbjct: 61 MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+G+ A C+QHE+DHL G+LFID+LSRLKR +K+ K+ + +D Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170 >gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205] gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205] Length = 176 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+E++ DI L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPK+ + + Y+EGCLS+P V+R + + + ++ + Q Sbjct: 61 MDLSEE--KNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2] gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2] Length = 189 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 83/168 (49%), Positives = 117/168 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR VS P++KI +I L ++M E MY GIGLAA+Q+ V RL+ Sbjct: 19 MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K P VFINP+I++ SDD SVY+EGCLSIP+Y +V+R A + +RYMD + + Sbjct: 79 MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K +L Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186 >gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3] Length = 171 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP LR++S+PIE++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016] Length = 168 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2] gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1] gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719] gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192] gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58] Length = 168 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5] Length = 168 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +D+ YQEGCLS+P + +V R + ++ +D + Q Sbjct: 61 MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 167 >gi|328545268|ref|YP_004305377.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1] gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1] Length = 172 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 89/170 (52%), Positives = 121/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++I PDP+LR+ P+ K++ I L D+MLE MY+ GIGLAA QIGVL RL V Sbjct: 1 MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + PMVFINP+I+ S++ SVYQEGCLSIP+Y +V+R A + VR+ + + Sbjct: 61 LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K + + Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQARHAE 170 >gi|190890084|ref|YP_001976626.1| peptide deformylase protein [Rhizobium etli CIAT 652] gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 171 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida] Length = 168 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP++ +DD YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRTE--PRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + Sbjct: 119 PYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166 >gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 168 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ ++ L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ + +D+ YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSEDRTE--PRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166 >gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas Aeruginosa gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide Deformylase Inhibitors Length = 180 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + Sbjct: 73 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 179 >gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 171 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 132/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1] Length = 170 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 91/167 (54%), Positives = 123/167 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+P+E ++ + L D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ P +F+NP+I+T SD SVY+EGCLSIPDY A+V+R A +TVRY+ + + Sbjct: 61 IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K + Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAAR 167 >gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40] gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40] Length = 172 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR +++P+ K++ I LID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + PMVFINP I + Y+EGCLS+P + V R I V +D + + Sbjct: 61 IDLGEETKE--PMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I +GLLA C+QHE+DHLNG LF+D++S +KR I KK+ K + Sbjct: 119 EFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166 >gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 173 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 116/169 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP LR +++P+ I+ +I L D+MLE MY GIGLA Q+G L R++V Sbjct: 1 MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V +NP+I+ SDD SVY+EGCLSIPD A+V+R A + VR++D N Sbjct: 61 LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q +GL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL + R Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169 >gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b] gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b] Length = 179 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 86/164 (52%), Positives = 113/164 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR VS P+ I+++I L+D+MLE MY G+GLAA+Q+ V R++V Sbjct: 1 MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D KNPMVFINP+I+ S++ VYQEGCLS+PDY +V+R A + V ++D Sbjct: 61 ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK K Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVK 164 >gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42] gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 171 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 133/169 (78%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K + + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169 >gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ] gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ] Length = 168 Score = 158 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++PIE ++ I LID+M E MY+ GIGLAA Q+ V RLVV Sbjct: 1 MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + P VFINP+ +++ YQEGCLS+P + +V R + +R +D + Q Sbjct: 61 MDLSEDKNE--PRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 119 PFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166 >gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 168 Score = 158 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + + Sbjct: 61 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B] gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B] Length = 168 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 100/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR ++P+ +++ I LID+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ P VFINP++ Y EGCLS+P + V R + I V +D Sbjct: 61 IDVSENRDE--PRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGLLA CLQHE+DHL G LF+D+LS LKR I K+ K + R Sbjct: 119 TFAEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKRR 167 >gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 171 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 116/167 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDP+LR S P+ I ++I L+ +M E MY G+GLAA+QIGV R+V Sbjct: 1 MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID ++ VFINP+I+ S++ VY EGCLSIPDY A+V+R + V++ D + Sbjct: 61 IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167 >gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 171 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 86/167 (51%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+E + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK + Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167 >gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium caulinodans ORS 571] Length = 172 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 87/167 (52%), Positives = 119/167 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++I P+P LR++S P+ +I+ +I L +MLE MY GIGLAA+Q+GV R++ Sbjct: 1 MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ KNP+V INP++++ S++ S Y EGCLSIP+Y +V+R A +TVRY D Sbjct: 61 IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K + Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAAR 167 >gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 170 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 96/169 (56%), Positives = 131/169 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TV+Y+ + + Sbjct: 61 IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K + + Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169 >gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1] gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase, binds Zn(II)) [Acinetobacter sp. ADP1] Length = 174 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPD LR +++P+EK+ +I L +MLE MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + PMVFINPKI +++ Y+EGCLS+P V R++ + + ++ N + Sbjct: 61 MDLSEE--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ADGLLA C+QHE+DHLNG LF+D+LS LKR +K+ K+V+ R+ Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168 >gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp. H13-3] Length = 170 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 100/169 (59%), Positives = 135/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+I+ SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + + Sbjct: 61 IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K + + Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169 >gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207] Length = 168 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++P+ +++ I LI +M + M GIGLAA QI V R++V Sbjct: 1 MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + P VFINP+I + Y+EGCLS+P + V R A + +R +D + Sbjct: 61 MNLGEDDIG--PRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A GLLA C+QHE+DHL G LF+D+LS KR I KK+ K+ + Sbjct: 119 AFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKIHRQ 166 >gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370] Length = 189 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 102/187 (54%), Gaps = 20/187 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS+P+E + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--------------------EGCLSIPDY 100 IDLQ P V + + + EGCLS+P+ Sbjct: 61 IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A+V R + I R+ D + D LLATCLQHE+DHL GILFIDHLSRLKR M K Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180 Query: 161 KMSKLVQ 167 K+ KL + Sbjct: 181 KLEKLRR 187 >gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148] gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148] Length = 168 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V+ P+ + L+D+MLE MY+ GIGLAA Q+ V R++V Sbjct: 1 MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+VFINP++ + Y EGCLS+P Y V R I V+ + + + Sbjct: 61 IDLSEKQND--PLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K + R Sbjct: 119 PFSSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRRR 167 >gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145] Length = 173 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR V++PIE+++ + ID+M E MY + G+GLAA Q+ V RL V Sbjct: 1 MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + IT S+ +EGCLS P+ A V+R+ ITV+ +D N + Sbjct: 61 ADCSENQNEPL---VFINPEITRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L++ Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167 >gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 187 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 106/169 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++ P+ +I +I L D+ML MY GIGLA Q+ + R++ Sbjct: 14 MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +PMV INP+I+ S++ + Y+EGCLSIP+ ADV+R A + VR+ Sbjct: 74 MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 GL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182 >gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 167 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 2/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV+ Sbjct: 1 AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 DLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166 >gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7] Length = 178 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ + P++K++ +I L+D+M E MY GIGLAA Q+ V +++V Sbjct: 1 MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + P+VFINP+I+ + + + CLS+P Y V+R+ + VR +D N + Sbjct: 61 IDVSENNDQ--PLVFINPEILDRVGEEEMQEG-CLSVPGYFETVRRADRVRVRALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTRQ 165 >gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063] Length = 170 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 118/170 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PDPILR+ S P++++N +I L+ NMLE MY+ GIGLAAVQ+G+L R++V Sbjct: 1 MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+ F+NPKI+ SD QEGCLSIP + ++KR V+Y+D + + Sbjct: 61 IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + ADGLLATC+QHE+DH NG LFID+LS+LK+ I KK++K + ++ Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTKAQKNQE 170 >gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56] Length = 171 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 98/169 (57%), Positives = 134/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR++S+PIE++++D+ L D+MLE MY GIGLAA+QIGV R++V Sbjct: 1 MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P VFINP+I+ SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N + Sbjct: 61 IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 170/170 (100%), Positives = 170/170 (100%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV Sbjct: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ Sbjct: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 >gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase Complexed With Antibiotic Actinonin Length = 171 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ ++D YQEGCLS+P + +V R + ++ +D + Sbjct: 61 MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167 >gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1] gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 126/170 (74%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PDPILR +S+P+E I+S + L D+MLE MY G+GLAA+QIG+ R++V Sbjct: 1 MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +KNP+V INP+++ SD+ ++Y+EGCLSIP+Y A+V+R + VRY + + Sbjct: 61 LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K K + ++ Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKEKN 170 >gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum AMB-1] Length = 190 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 117/170 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ S+P+ ++ I L+ +ML+ MY GIGLAA QIGVL R++V Sbjct: 21 MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+I+ SD+ + Y+EGCLS+P++ ++V R A + VRY+D Sbjct: 81 MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K + + Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKESE 190 >gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 176 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P++I PDP L+ + P+ +I ++ L D+MLE MY GIGLAA Q+GVL R++V Sbjct: 4 MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +D P+V +P+I+ SD +VY+EGCLSIPD A+V+R A + VR+ D Sbjct: 64 MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + + Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKREK 173 >gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 178 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+ + P+E + + +D+M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+++ + + +EGCLS+P V R+ + VR D N + Sbjct: 61 IDVSEEKDA--PLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHE+DHL G LF+DHLS LKR M KK+ K +LR+ Sbjct: 118 FFEMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167 >gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 194 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ +++ I L+D+M E MY GIGLAA Q+ V +++V Sbjct: 19 MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + P+ INP+I++ + + + CLS+P VKR+A I+VR +D + Sbjct: 79 IDLSEE--KNQPLCLINPEILSKEGEEKMDEG-CLSVPGIYESVKRAARISVRALDRDGA 135 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE+DHLNG LF+D+LS LKR I K++ K +LR Sbjct: 136 PFELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184 >gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 173 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP L++ + + + +++ L D+MLE MY GIGLAA Q+GVL RL+V Sbjct: 1 MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D D + P+V NP++I SDD +VY+EGCLSIPD A+V R A + VR+++ Sbjct: 61 LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K KL + R Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170 >gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901] gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901] Length = 168 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPD LR V++P+E+++ + +ID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ P+VFINP+I + Y+EGCLS+P + +V R + V ++ + + Sbjct: 61 IDISENHDE--PLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ +GLLA C+QHE+DHL G LF+D++S +KR I KK+ K + R Sbjct: 119 EFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKER 167 >gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080] gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080] Length = 168 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++ P+ +++ + L D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + P +FINP + Y EGCLS+P + ++R I V D + + Sbjct: 61 IDISEN--KDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 DGLLA CLQHE+DHL G LF+D+LS LKR I K+ K + RD Sbjct: 119 LFSRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168 >gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1] Length = 170 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 111/168 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP L++ + + +++ I L+D+MLE MY+ GIGLAA Q+ V R++V Sbjct: 1 MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + P+ +NP+I+ SDD + Y+EGCLS+P++ A V R I VRY D Sbjct: 61 ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 HQ I ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K + Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168 >gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT] Length = 167 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V+ P+E++N DI L+ +M E MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + I Y+EGCLS+P V R+A +TV +D + + Sbjct: 61 IDLSEDKSAL---QVFINPKIVSQCGSQEYEEGCLSVPGIYEPVTRAAEVTVEALDEHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK+ I K+ K + R Sbjct: 118 PFTLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKRQRER 166 >gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 172 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 86/170 (50%), Positives = 123/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I P+P LR +S +EKI+S++ L+++M + MY GIGLAA+Q+GV R+V Sbjct: 1 MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+ INP+II S++ SVY EGCLSIP+Y +V+R A +TVR+ D Q Sbjct: 61 IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170 >gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8] gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8] Length = 167 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP LR +++P+E++ DI LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MIREILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINPK+ + QEGCLS+P + DVKR + D + + Sbjct: 61 DLSEDKTE--PRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKE 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL + Sbjct: 119 FVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKLHKQ 165 >gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92] gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92] Length = 171 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP LR ++ P+ ++ +I ID+M E MY+ GIGLAA Q+ + R+V Sbjct: 1 MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + P+V INP+ ++ YQEGCLS+P + DVKR I ++ +D N + Sbjct: 61 MDISDDQNE--PLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I K+ K+ + ++ Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKIHKQQE 168 >gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 172 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++I PDP L++V+ P+ I ++ D+MLE MY GIGLA QIG++ RL+V+ Sbjct: 1 MIRPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+++ SD+ SVY+EGCLSIPD A+V+R A +TV ++D + Sbjct: 61 DCVKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R Sbjct: 121 LQEESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169 >gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 171 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 135/169 (79%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY GIGLAAVQIGV R++V Sbjct: 1 MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+++ SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + + Sbjct: 61 IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K + + Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169 >gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17] gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17] Length = 167 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P+ + +I LID+M E MY GIGLAA Q+ V ++VV+ Sbjct: 1 MILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINPKI D QEGCLS+P + +V+R ++ +D N + Sbjct: 61 DLSEDNSE--PKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEA 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A GLLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL + Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQK 164 >gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 172 Score = 154 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 77/167 (46%), Positives = 110/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP L + + P+E ++ I L+D+MLE MY GIGLAA Q+GVL R++V Sbjct: 1 MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PM NP+II S+D Y+EGCLS+P+ V R + VRY+D + + Sbjct: 61 LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I ADGLLA LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ + Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKMKR 167 >gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 170 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 117/170 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ S+P+ ++ I L+ +MLE MY GIGLAA QIGVL R++V Sbjct: 1 MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+II SD+ + Y+EGCLS+P++ ++V R A + VRY+D Sbjct: 61 MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K + + Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKEAE 170 >gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4] gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4] Length = 196 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 93/168 (55%), Positives = 122/168 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ PD LR V P+E +++DI L D+M E MY+ GIGLAA QIGVL RL V Sbjct: 23 MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ K+PMVFINPKI+ S+D SVYQEGCLSIPDY D++R A + V++++ + Sbjct: 83 LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190 >gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633] Length = 175 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P++ ++ + L+D+M+E MY+ DGIGLAA+Q+GV R++V Sbjct: 1 MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL D + P ++NP I ++D YQEGCLS+PD V+R + V Y+D + + Sbjct: 61 MDLSDERND--PRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+ L A C+QHE+DHL G++FID+LSRLKRD KK+ KLV+ R Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167 >gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989] gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989] Length = 166 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ FPD LR V++P+ ++ +ID+M E MY+ GIGLAA Q+ + +++V Sbjct: 1 MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP I ++ Y EGCLS+P + V+R I V +D N Sbjct: 61 MDLSEDKSE--PQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 II +GLLA C+QHE+DHLNG LF+D+LS +KR I KK+ K + Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQQRG 166 >gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211] Length = 172 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 78/166 (46%), Positives = 117/166 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+P+LR+VS+P++++ + L+D+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I S Y+EGCLS+P+ A++ R + V Y+D + + Sbjct: 61 MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKLK 166 >gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 167 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR+ + PI +N I L D+MLE MY GIGLAA Q+ + R++V Sbjct: 1 MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I ++ ++EGCLS+P+ V R+ + ++ ++ + Sbjct: 61 IDISEDKSDPL---VLINPEIVAAEGEREFEEGCLSVPEAYEAVIRADKVKIKAVNLQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGLLATC+QHE+DHL+G LF+D+LS LKR I K++ K + + Sbjct: 118 DFEFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQK 166 >gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11] gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11] Length = 189 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + + + L D+MLE MY+ G+GLAA QIGVL RL+V+ Sbjct: 18 MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NPKI++ SD+ +VY+EGCLSIPD A+V R + V +M+ + Sbjct: 78 DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 138 AARETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186 >gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17] gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17] Length = 173 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDP LR VS+P+E ++ + L+ +M+E MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 IDLQ+ KNP +INP+I++ S++ S Y EGCLSIP+ A+VKR A V+++ Sbjct: 61 IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ + Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKIRKG 173 >gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198] Length = 172 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 84/168 (50%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M PL+ FPD LRRV+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ R P+ INP+II+ D+ +GCLSIPD A +R F+ VR +D N Sbjct: 61 IDVSEN--RDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A L A C+QHELDHL+G LFIDHLS LKR I KK KL +L Sbjct: 119 EIELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKL 166 >gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60] gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60] Length = 176 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR +++P+ + ++ LID+M E MY+ GIGLAA Q+ +LVV Sbjct: 1 MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + +D+ Y+EGCLS+P+Y V R + + +D Sbjct: 61 MDLSED--GSQPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A GLLA C+QHE+DHLNG +F+D+LS+LK+D K+ K+V+ R+ Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168 >gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4] gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1] gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1] gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4] Length = 171 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 85/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM+ + Q Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1] gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1] Length = 174 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++V+ P+ + ++ L DNML MY GIGLAA Q+GV RL+V+ Sbjct: 1 MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60 Query: 62 DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+ NP++I SD+ + Y EGCLSIPD ADV R +TVR+MD N Sbjct: 61 DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169 >gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 170 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E ++ L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + P VFINP+I+T + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSEEKDA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL + Sbjct: 118 QGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRK 167 >gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 212 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 45 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + Sbjct: 105 MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 162 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 163 PFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 211 >gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 173 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PDP L++V+ P+ +N D+ L D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ PMV INP+++ S++ +VY+EGCLSIP+ A+V+R + V + + + Sbjct: 61 MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169 >gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 172 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P++ ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+II+ SD+ SVY+EGCLSIPD A+V R A + V +MD N + Sbjct: 61 DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRE 168 >gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S] Length = 176 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S P+E I+ D+ LID+M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ+ K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I Sbjct: 61 IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174 >gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse] gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse] Length = 176 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 88/170 (51%), Positives = 124/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR VS+P+E ++S I L D+MLE MY G+GLAA+QIG+ R++V Sbjct: 1 MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +KNP+V INP+I+ SD+ ++ +EGCLSIP+Y +++R + VRY D + Sbjct: 61 IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K + ++ Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKEKN 170 >gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 168 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ + + LID+M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP + +DD YQEGCLS+P + +V R + V+ D + + Sbjct: 61 MDLSEDRSE--PRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K + + Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167 >gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 171 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L+ S PI I +I L +M E MY+ G+GLAA Q+G+ +LVV Sbjct: 1 MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + + I D F +EGCLS+P Y +KR++ + VRY + Q Sbjct: 61 MDCAPKENPELIVAINPEIIEREGDSFE--EEGCLSVPGYYCRIKRNSHVKVRYQNLEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GLLA QHE+DHL+G+LF+DHLS LK++M KK K+ + ++ Sbjct: 119 TVEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKIQRQQE 168 >gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893] gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893] Length = 167 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P++++ + LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINP++ + QEGCLS+P + DV R +R + + + Sbjct: 61 DLSEDKSE--PRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A GLLA C+QHE+DHLNG LF+D+LS LKR I KK+ KL + Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHK 164 >gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888] Length = 171 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 79/168 (47%), Positives = 118/168 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+LR++S P+E+++ ++ L+D+MLE MY GIGLAAVQ+GVL R++V Sbjct: 1 MAILPIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+ NP+++ +++EGCLSIPD +++R A +TVRY+D + + Sbjct: 61 VDAAEDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K K V+ Sbjct: 121 EQELAAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVRE 168 >gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002] Length = 172 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 120/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510] gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510] Length = 170 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 78/167 (46%), Positives = 123/167 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY GIGLAA Q+GVL R++V Sbjct: 1 MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + NP+ NP+II S+D +V +EGCLS+P+ A+V R + VRY+D Q Sbjct: 61 VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ + Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKMQK 167 >gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396] gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396] Length = 168 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR V++P++ ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + PMVFINP I D QEGCLS+P + V R + +R D N + Sbjct: 61 IDVSEDKSE--PMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA CLQHE+DHLNG L++D+LS +KR I KK+ K ++R Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167 >gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001] gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001] Length = 171 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 84/167 (50%), Positives = 114/167 (68%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S P+ + +I L +M+E MY G+GLAA+QIGV R+V Sbjct: 1 MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + KNP V++NP+I+ S++ VY EGCLSIP++ +V+R + VRYM + + Sbjct: 61 IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167 >gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043] Length = 170 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPD LR + P+E ++ + L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R P V INP+ D+ QEGCLSIP+Y A+V R+ ++++ +D + Sbjct: 61 MDVSDD--RSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K + Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHR 165 >gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C] Length = 176 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 92/170 (54%), Positives = 123/170 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LVI PDPILR VS+P+E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 61 VDIHPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 177 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+V Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 I +D ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D Sbjct: 61 IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 172 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP++I SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q D L ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + + Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKREK 169 >gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444] Length = 188 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 85/186 (45%), Positives = 120/186 (64%), Gaps = 19/186 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L++VS P+EK + ++ L+++M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60 Query: 61 IDLQDHAHR-------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ K P VFINP+I+ S+++SVYQEGCLS+P+ Sbjct: 61 IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+V+R A I R+ D + + +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M KK Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180 Query: 162 MSKLVQ 167 + KL + Sbjct: 181 LEKLRK 186 >gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 172 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V P+ I+ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P+V NP+++ SD+ ++Y+EGCLSIP+ A+V R + V ++D + + Sbjct: 61 DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1] gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1] Length = 177 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 5/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP LR +S P+E ++ ++ LI +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIRLILEAPDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 IDLQ+ ++P VFINP++ S++ SVY EGCLS+P+ A+V+R A I R++ Sbjct: 61 IDLQEEEDAEGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K + R Sbjct: 121 DEQGAKHEERLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174 >gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 173 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 79/167 (47%), Positives = 110/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+QIG R+V Sbjct: 1 MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +NP+V ++P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167 >gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K] gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K] Length = 185 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + + + CLSIP DV R A + VR +D + Sbjct: 61 DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58] gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58] Length = 176 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ PDP LR +S ++ I+ D+ LID+M + MY GIGLAA+Q+GV R++V Sbjct: 1 MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ+ KNPMVFINP+I+ SDD SVY EGCLS+PD A+V+R + I Sbjct: 61 IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNKARR 174 >gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 177 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 82/174 (47%), Positives = 113/174 (64%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR S +E + ++ LID+M E MY GIGLAA+Q+GV RL+V Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 I + ++NPMVFINP++ ++ +Y EGCLS+PD A+V+R + I ++ D Sbjct: 61 IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K +LR+ Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174 >gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066] gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066] Length = 175 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V FPD LR++ P+ + ++ + L D+M E MY +GIGLAA QIG+ R+VV Sbjct: 1 MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60 Query: 61 IDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID+ + ++ + IT + +EGCLS+P+YRA++KR IT+ D N Sbjct: 61 IDIPEEDGKQGKNKLVLINPKITAKEGEVASEEGCLSVPEYRAEIKRYEKITLECQDLNG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q QI ADGLLA C+QHELDHL+G LFID+LSRLKRD + K KL + + Sbjct: 121 QKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKLKKEQ 170 >gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1] Length = 174 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 91/168 (54%), Positives = 123/168 (73%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 K LV PDPILR VS+P+E+I+ I L D+MLE MY GIGLAA+Q+GV R++VID Sbjct: 1 MKSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVID 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++ KNP+V INP+I+ SD+ ++Y+EGCLSIP+Y A V+R + VRY D + Sbjct: 61 IAENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQT 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K + +D Sbjct: 121 EIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168 >gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1] Length = 170 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ + ++ + L ++MLE MY GIGLAA QI V +++V Sbjct: 1 MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + IT Y+EGCLS+P + +V R I V+ ++ + Sbjct: 61 MDVSEDKSQPM---VFINPQITVVGGEKEYEEGCLSVPGFHENVVRPDVIHVKALNAQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K + Sbjct: 118 AFELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164 >gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC] Length = 171 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q Sbjct: 61 IDVSEE--RDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167 >gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 174 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 114/169 (67%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ ++ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V ++D + Sbjct: 61 DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 171 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +++FPD LRRV+ +++ ++ + L + MLE MY G+GLAA QI V R+ V Sbjct: 1 MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+VFINP I+ S +EGCLSIP V R+ + VR + + Sbjct: 61 ADCAEDGCAPEPLVFINPVILDRSGSVES-EEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GLLA C+QHE+DHL+G LFID+LS LKR I KK+ K ++ ++ Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169 >gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 193 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 9/179 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP+LRRV P+ ++S+I L+D+MLE MY GIGLAA QI V+ R++V Sbjct: 1 MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60 Query: 61 IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +D+ P+ NP+I+ S++ S Y+EGCLSIPDY +V R A + Sbjct: 61 MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 V Y+D Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK + + Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAKRDN 179 >gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1] gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1] Length = 176 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 94/174 (54%), Positives = 122/174 (70%), Gaps = 7/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S P+E I++D+ LID+MLE MY GIGLAA+Q+GV R++V Sbjct: 1 MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQ-------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 IDLQ D K PMVFINP+I+ S+D SVY EGCLS+PD A+V+R A I Sbjct: 61 IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +MD + + +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K + Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174 >gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2] gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2] Length = 196 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PD LR V+RP+ ++S++ L+D+MLE MY GIGLAA QI V R++V Sbjct: 1 MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60 Query: 61 ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D +D + + +P+ NP+I+ S++ S Y+EGCLSIP++ +V R + V Y+D Sbjct: 61 LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR I KK K +L Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171 >gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 172 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ + L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+++ SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 61 DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088] gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088] Length = 178 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++ LI +M E MY GIGLAA Q+ V R++V Sbjct: 11 MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P VFINP++ + Y EGCLS+P + V R I VR ++ + Sbjct: 71 IDVSEDKSE--PRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGE 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K + + Sbjct: 129 AYEEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKAHRAK 177 >gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 168 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D N + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3] Length = 171 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 88/169 (52%), Positives = 121/169 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR VS+P+E I+ I L D+MLE MY+ G+GLAAVQ+G+ R++V Sbjct: 1 MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KN +V INP+I+ SD+ SVY+EGCLSIP+Y A+V+R + + Y + + Sbjct: 61 VDISPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K + + Sbjct: 121 QEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAKKQ 169 >gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 168 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] Length = 168 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLATC+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320] gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906] gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320] gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906] Length = 172 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ FPD LR+V+ P+EK++ +I LID+M+E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ R P+ INP+II+ D+ +GCLSIPD A +R ++ V+ +D N Sbjct: 61 IDVSEN--RDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A L A C+QHELDHLNG LFIDHLS LKR I KK KL +L Sbjct: 119 EIELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166 >gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5] Length = 185 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V+ P+E+++ I L+D+M E MY+ DG+GLAA QI VL R++VI Sbjct: 1 MVREIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + + + CLSIP DV R+A + VR +D + + Sbjct: 61 DTSPRQEGQKLIHLVNPEIVRAEGETTWTEG-CLSIPGEAEDVARAAKVWVRALDYHGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA +QHE DHLNG LF+DHLS LKR++I K+M KL R Sbjct: 120 FELEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167 >gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 173 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+++ P+ +I +I L +ML MY G+GLAA Q+GVL RL V Sbjct: 1 MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60 Query: 61 IDLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D + +NP+V +NP++ S+ + Y+EGCLSIP+ ADV R A + VR++ + Sbjct: 61 MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GL ATC QHE+DHL+G LFIDHL +KR MIT+KM KL + R Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170 >gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C] Length = 185 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V++P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + + + CLSIP DV R A + VR +D + Sbjct: 61 DTSPRQEGQTLLHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73] gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73] Length = 171 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 91/170 (53%), Positives = 125/170 (73%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR VS+P+E I+S I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ S++ ++Y+EGCLSIP+Y A+V+R ++ + Y D + Sbjct: 61 LDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K K + ++ Sbjct: 121 QAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKKQN 170 >gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 168 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42] gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42] gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 170 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+M MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I S + V EGCLS+P V+RS + VR +D + Q Sbjct: 61 IDVSEERDT--PLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRVIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168 >gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4] gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4] Length = 167 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V R+VV Sbjct: 1 MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ + CLS+P+ V R+A ITVRY+D Q Sbjct: 61 IDISEDKSS--PLVLINPEIVARRGKAESDEG-CLSVPEIFEPVTRAAEITVRYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A LLATC+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 EQELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165 >gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup] gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup] Length = 178 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 86/172 (50%), Positives = 123/172 (71%), Gaps = 2/172 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+++++S + L D+MLE MY+ GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ RK P V INP+I+ SD+ ++Y+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K K + ++ Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKEKN 172 >gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242] gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242] Length = 188 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 87/170 (51%), Positives = 121/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR+VS P+E+I+++I L+D+MLE MY+ GIGLAA+Q+ V R+VV Sbjct: 1 MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P+ INP+II S++ S YQEGCLS+PDY DVKR A + VR++D + Q Sbjct: 61 VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK + + Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARFDE 170 >gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 168 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMV INP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601] Length = 171 Score = 151 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ + ++D+ML MY +GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I S + + +EGCLS+P V+RS + R +D + Q Sbjct: 61 IDVSEE--RDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167 >gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 168 Score = 151 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ + L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P V+INP+ +D+ YQEGCLS+P++ +V+R + ++ +D + + Sbjct: 61 MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + + Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 167 >gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020] gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 168 Score = 151 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040] Length = 174 Score = 151 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++++ + ++ D+ L D+MLE MY+ GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+V NP++I SD+ +VY+EGCLSIP+ A+V R + V +MD + Sbjct: 61 DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 185 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR+ +RP+E+++ I L+D+MLE MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ FINP+++ + + CLS+P + V R+ +TV +D + + Sbjct: 61 IDVSEGHDT--PLCFINPRLVAREGTEQMDEG-CLSVPGFFETVTRAERVTVEALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL+G LF+DH+S LKR I K+ K + R Sbjct: 118 PFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKER 166 >gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4] gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4] Length = 176 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 97/159 (61%), Positives = 123/159 (77%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++I PDP+LR VS+PIE+I++D+ LID+MLE MY GIGLAAVQI V RL+V Sbjct: 5 MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ K P+VFINP+II S S Y+EGCLSIPDY A+V+R A +TV+ +D + + Sbjct: 65 IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+ Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMVI 163 >gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196] Length = 170 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ +P+V +PDP+L++ + P+ + N ++ L+D+M E MY GIGLAA QIG+ RL V Sbjct: 1 MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + +V INP+II + +EGCLS+PD R V R+ +TVR + + + Sbjct: 61 IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + LL+ QHE+DHL+G+LFI +S LKRD++ +++ K+ + + Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKMQRAGE 169 >gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099] gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti MAFF303099] Length = 176 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 121/158 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ ++ SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158 >gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 182 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 85/169 (50%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V + ++ D+ L D+MLE MY+ GIGLAA QIG+L RL+V+ Sbjct: 11 MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+II SD+ +VY+EGCLSIPD A+V R + V +MD + Sbjct: 71 DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L LKR MIT+KM KL + R Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179 >gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 168 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSA--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype'] Length = 169 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + IT D ++ +EGCLS+P A V+R+ ITV+ +D N + Sbjct: 61 MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALDQNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15] Length = 167 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V+ Sbjct: 1 MILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + P VFINP++ + QEGCLS+P + DV+R +R MD + + Sbjct: 61 DLSEDKSE--PRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A GLLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K + Sbjct: 119 FELEAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHK 164 >gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062] Length = 172 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 80/169 (47%), Positives = 119/169 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P+ +LR++S+P+E + + L+D+ML+ MY+ GIGLAA+QIGV R++V Sbjct: 1 MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +K P F+NP I +D S Y+EGCLS+PD A+++R V Y+D N + Sbjct: 61 MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+ R Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169 >gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297] gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297] Length = 169 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++PIEK++ +I L D+MLE MY GIGLAA Q+ RL+V Sbjct: 1 MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P + INP+ +D + CLS+P Y V RS I+VR ++ + Sbjct: 61 VDVSEDQND--PHILINPEYDRLGEDIEYQEG-CLSVPGYYEKVSRSDRISVRALNRDGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A L A C+QHE+DHL+G LF+D+LS LKR I KK+ K + Sbjct: 118 AIEFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165 >gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46] Length = 173 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 80/167 (47%), Positives = 109/167 (65%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR S P+ I ++ L +MLE MY G+GLAA+Q+G R+V Sbjct: 1 MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + P+V I+P+I+ S++ Y+EGCLSIP+Y A+V R + VR+ + + Sbjct: 61 IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K + Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167 >gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105] gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105] Length = 169 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L+ V+ P+ + + ++ L +M E MY G+GLAA Q+ V R++V Sbjct: 1 MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D VFINP+II S + VY+EGCLS+P V+R + VR + + Sbjct: 61 IDVTDDKSGLT--VFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I D LLA C+QHE+DHLNG +F+++LS+LK+ I KM K +L+ Sbjct: 119 WFEIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167 >gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1] Length = 169 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 75/156 (48%), Positives = 113/156 (72%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ P P L++VS+P+EK++ ++ L+D+MLE MY+ GIGLAA+QIGV R++V Sbjct: 1 MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL K P F+NP+I+ SDD + Y+EGCLS+P+Y +V+R A + +RY++ + Sbjct: 61 MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GL A C+QHE+DHL G+LFIDHLSRLKR+ Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156 >gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 208 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ + +LI +M + MY G+GLAA QI V +L+V Sbjct: 30 MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ S++ ++++EGCLS+P +++R A +TVR +D N + Sbjct: 90 IDVSE--QKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGK 147 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K + Sbjct: 148 EFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLKEERE 195 >gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS] Length = 183 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L + SRP+ +S++ L++NM + MY G+GLAA Q+ ++VV Sbjct: 1 MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + VFINP+II S++ ++++EGCLS+P +++R A +TVR D + + Sbjct: 61 IDVSEKRNELH--VFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K + + Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLKEEREQ 167 >gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126] Length = 169 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + I D ++ +EGCLS+P A V+R+ ITV+ +D N + Sbjct: 61 MDVSEDQNEPR---VFINPEIIRKDGSTISEEGCLSVPGNYAKVERAESITVKALDQNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 SFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165 >gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1] Length = 185 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PDPIL+ V+ P+++++ I L+D+M E MY+ DG+GLAA QI V R++VI Sbjct: 1 MVREIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + +NP+I+ + + + CLSIP DV R A + VR +D + + Sbjct: 61 DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDYHGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA LQHE DHLNG +F+DHLS LKR++I K+M KL R Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167 >gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256] gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256] Length = 180 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP LR +S+P+E ++++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 4 MAILPIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILV 63 Query: 61 IDLQD--------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 IDLQ+ + P VFINP FSD+ SVYQEGCLS+P+ ADV R A +TV Sbjct: 64 IDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTV 123 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + D + +H GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL + Sbjct: 124 DWQDEDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKLRK 178 >gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 176 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 121/158 (76%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+I PDPILR+VS+P+E++++ + L D+ML MY GIGLAA+QIG R++V Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P VFINP+I+ +D SVY+EGCLSIPDY A+V+R A + V+Y+D + + Sbjct: 61 IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158 >gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583] gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583] Length = 182 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 6/176 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPLVI PDPILR +S+P+E I+S I L D+MLE MY+ GIGLAA+Q+G+ R++V Sbjct: 1 MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60 Query: 61 ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +D + + ++P++ INP+I+ SD+ ++ EGCLSIP Y A+V+R + +RY Sbjct: 61 VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K K + + Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKENN 176 >gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476] gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476] Length = 178 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 87/172 (50%), Positives = 124/172 (72%), Gaps = 2/172 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV PDPILR VS+P+E++++ + L D+MLE MY GIGLAA+QIG+ R++V Sbjct: 1 MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60 Query: 61 IDLQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ +K P+V INP+I+ SD+ +VY+EGCLSIPDY A+V+R + VRY + Sbjct: 61 IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K K + ++ Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKEKN 172 >gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 168 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB] gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB] Length = 167 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP L++V+ P+ K++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +++ + +EGCLS+P V+R+ + V Y+D + Sbjct: 61 IDVSEDKSEL---QAFINPVLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGLLA CLQHELDHLNG +F+DHLS LK+ I K++K + Sbjct: 118 QQTLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164 >gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581] gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ FPD LR + +E ++ ++ L+D+MLE MY GIGLAA Q+ V R++V Sbjct: 1 MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D P+V INP+ D+ QEGCLSIP+Y A+V R+ + ++ ++ + Sbjct: 61 MDVSDDQSA--PLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K +L Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHKL 166 >gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255] gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255] Length = 187 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 112/171 (65%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R+V Sbjct: 13 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ P VFINP+I++ S++ SVY+EGCLSIP+Y V+R + + +R+ D Sbjct: 73 MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K + Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183 >gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 106/170 (62%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+T + + CLS+P ADV R+ I VRY+D Sbjct: 61 FMVIDVSEEKNA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAIAVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ + Sbjct: 118 QGQAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKMRK 167 >gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5] gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5] Length = 175 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ + +P FINP+I+ S + +VY+EGCLSIP+Y ADV+R A + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169 >gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales bacterium HF4000_16C08] Length = 169 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++N +I L+ +M E M +GIGLAA Q+ ++VV Sbjct: 1 MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + IT D ++ +EGCLS+P A V+R+ ITV+ ++ + Sbjct: 61 MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALNEEGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHELDHL G LFID+LS LKR I KK+ K +L Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165 >gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 170 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PM INP+I+ SD+ + +EGCLS+P V+RS + V+ +D N Sbjct: 61 IDVSEERNE--PMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1] gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 177 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MIRPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVL 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + P+ +NP+++ S+D S Y+EGCLS+P+ ADV+R A + VR+ + + Sbjct: 61 DCNKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K + + Sbjct: 121 EEEEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFKRAQ 169 >gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 174 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P++ +++ I LI +M E MY +GIGLAA QI V RLVV Sbjct: 1 MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P VFINP+I+ S + + +EGCLS+P V+R + VR +D Q Sbjct: 61 IDVSE--GRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +++ +GLL+ C+QHE+DHL G +F+++LS LKR+ I KM KL + Sbjct: 119 SRVVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKLQRE 166 >gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009] gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase [Rhodopseudomonas palustris CGA009] gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1] Length = 175 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 170 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VFINP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSDEKNL--PQVFINPQIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYVDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q Q + +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 HGQAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 173 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDP+L++ + P+ +++ I L+ +MLE MY+ GIGLAA Q+GV R++V Sbjct: 1 MAILPIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIV 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D + A + + I ++ ++EGCLS+P+ V R + VR ++ Sbjct: 61 VDVTYSEAAAQDGEPYCLANPEIIAAEGEITWEEGCLSVPESYGKVDRKEHVVVRGLNAQ 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + A GL A CLQHE+DHL+G LFIDHLS LKR M Sbjct: 121 GELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159 >gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 177 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 72/169 (42%), Positives = 112/169 (66%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I+PDP+L++ ++P+ K++ L+ +M E MYS +G+GLAA QIGVL R++V+ Sbjct: 1 MVREILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P+ INP+II D + + CLSIP ADV R+A +TV+++D + Q Sbjct: 61 DTTHSQPELKPVAMINPEIIAMEGDTTYNEG-CLSIPGEAADVDRAAVVTVKFLDPDGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + DGLL+ +QHE DHLNG +F+DH+S LKR+ I K+M +L R+ Sbjct: 120 QTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168 >gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 173 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++ + + + + + L D+ML+ MY GIGLAA QIGV+ R+ V Sbjct: 1 MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D ++ PMV +NP+I SD+ + Y EGCLSIP+ A+V R A + V + D Sbjct: 61 MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169 >gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688] gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688] Length = 166 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P++++N++I LID+M E MY+ GIGLAA Q+ V +++V Sbjct: 1 MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + KN + IT Y+EGCLS+P +V R+A +TV +D N + Sbjct: 61 M---DLSEAKNELRVFINPKITAKCGAQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ A GLLA C+QHE+DHL G +F+D+LS LK++ I K+ K + R Sbjct: 118 PFVLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKKRQRDR 166 >gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1] gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1] Length = 176 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ PI+ ++++I LI +M+E MY GIGLAA Q+ +L+V Sbjct: 1 MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL ++ P VFINPK+ +D Y+EGCLS+PD V R + + +D + Sbjct: 61 MDLSENNDS--PRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHLNG+LF+D+LSRLK+ K+ K ++ R+ Sbjct: 119 AFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168 >gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 169 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ Sbjct: 1 MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S+D V +EGCLS+P V+RS+ + V+ +D Q Sbjct: 61 IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++I A+GLLA C+QHE+DHL G +F+++LS LKR I KM K + Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166 >gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 171 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 110/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++K++++I ++++M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + +N + + +I + + +EGCLS+P+ RA V R+ ++ ++ +D N + Sbjct: 61 I---DVSESRNERLVLINPVILETSGETGIEEGCLSVPEQRAFVPRAKWVKIKALDVNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LLA C+QHE+DHLNG LFID+LS LKR I +K+ KL +L+ Sbjct: 118 EFELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166 >gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 177 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I PDP L+++ P+ +I D+ L D+ML MY GIGLAA Q+GV+ RLVV+ Sbjct: 1 MIRSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVM 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+ INP+++ S+D S Y+EGCLS+P+ A+V+R A + VR+ + + Sbjct: 61 DCNKQPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL ATC+QHE+DHL+G LFID+L LKR MIT+KM K + + Sbjct: 121 EEEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFRRAQ 169 >gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T] gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T] Length = 167 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V+ P+ +++ +I LI +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I V +EGCLS+P V R+ + VR ++ + Sbjct: 61 IDVSEDKSGL---MALINPEILERSGEQVCEEGCLSVPGIYEKVSRAERVKVRALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHE+DHL+G +F+++LS+LK I K++K ++ Sbjct: 118 SFEFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKARI 165 >gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism] Length = 169 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+ ++N + LID+M E MY G+GLAA QI V R+VV Sbjct: 1 MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMVFINP++ D Y EGCLS+P + V+R I+V +D + + Sbjct: 61 IDVSED--KSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I +GLLA C+QHELDHLNG LF+D++S KR I Sbjct: 119 SFTIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRIR 157 >gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 169 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ ++ + L+D+MLE MY GIGLAA Q+ V R++ Sbjct: 1 MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S+D V +EGCLS+P V+RS + V+ +D Q Sbjct: 61 IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++I A+GLLA C+QHE+DHL G +F+++LS LKR I KM K + Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166 >gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565] gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565] Length = 170 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ P+V INP++I + +EGCLS+P RA V R+ I +R +D N + Sbjct: 61 IDVSENRED--PLVLINPEVIEQCGS-TGIEEGCLSVPGSRALVPRAEQIKIRALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PD L V++P+E +++ I L+D+M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + I +EGCLS+P V R+ +TVR +D + + Sbjct: 61 I---DTSETRDALRVFINPEIVAQSGREESEEGCLSVPGVFDRVTRAERVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G +F+D+LS LKR+ I K+ K + Sbjct: 118 PFELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165 >gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A] Length = 175 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIEK+ +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + +D P +FINP+I++ S++ SVY+EGCLSIP+Y +V+R A + +R+ D Sbjct: 61 MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K +L Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172 >gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 170 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISDERNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 168 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + PMVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + Sbjct: 61 MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 119 PYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166 >gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1] gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1] Length = 175 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 78/171 (45%), Positives = 115/171 (67%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ P VFINP+II SD+ S+Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171 >gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b] gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b] Length = 170 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++ +++ + ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + + + + + +EGCLSIP+ RA V R+ ++ VR D + Sbjct: 61 I---DVSESREERLVLINPELLEKGGETGIEEGCLSIPEQRAFVPRAEWVKVRAQDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL+G LFID+LS LKR I +K+ KL + Sbjct: 118 SFELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165 >gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4] gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4] Length = 184 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 110/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ P++++ ++I LI +M+E MY +GIGLAA Q+ +L+V Sbjct: 1 MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 61 MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 119 AIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069] gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069] Length = 175 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ ++ ID+M E MY+ GIGLAA Q+ + + V Sbjct: 1 MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + I +EGCLS P A V+R+ I V+ +D + + Sbjct: 61 IDVSDDKSEP---LVFINPQIVEKRGVEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA C+QHE DH+ G LF+D+LS LKR+ I K + K Sbjct: 118 PFEMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEKQQNN 165 >gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 173 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK+++ I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + + + +EGCLSIP+ + V R+ + VR ++ N + Sbjct: 61 I---DVSESRSERLVLINPELIDKKGETGIEEGCLSIPEQQGFVARAEQVKVRALNYNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 LFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166 >gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 173 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 79/155 (50%), Positives = 111/155 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS+P+E++++D+ L+D+MLE MY+ GIGLAA+QIGV +++V Sbjct: 1 MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL P FINP+I+ S+D +VY+EGCLS+P++ DV+R A VRY+D + Sbjct: 61 MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + D LLATCLQHE+DHL GILFIDHLSR KR Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155 >gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 170 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R PMV INP+II + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDVSD--SRDQPMVLINPQIIEKRGE-DGIEEGCLSVPGSRALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFNE 167 >gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 170 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5] gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5] Length = 184 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR ++ P++++ ++I LI +M+E MY GIGLAA Q+ +L+V Sbjct: 1 MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINPK+ ++ Y+EGCLS+PD V+R + + +D N Sbjct: 61 MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +GLLA C+QHE+DHLNG++F+D+LSRLK+ K+ K++++R+ Sbjct: 119 KIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168 >gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 174 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P+ ++ D+ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60 Query: 62 DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+V NP+I+ SD +VY+EGCLSIP+ A+VKR + VR++D + Sbjct: 61 DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHLNG LFID+L +KR MIT++M KL + + Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKLKREQ 169 >gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110] gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 174 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 4/174 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+PIEK+ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ + P VFINP++I S++ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK K + + Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRAE 174 >gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 173 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++ P+ ++ + L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60 Query: 62 DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D P+V NP+++ SD+ +VY+EGCLSIPD A+V+R + V ++D + Sbjct: 61 DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170 >gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599] gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599] Length = 170 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+ + ++ I L+ +M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I SD Y+EGCLSIP V+R +TV + + + Sbjct: 61 IDITETHDQLQ--VFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHLNG LF HLSRLK++ I +K+ K+ + R Sbjct: 119 PFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167 >gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 185 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 80/181 (44%), Positives = 121/181 (66%), Gaps = 11/181 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +E+++ D+ L+D+MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D++ RKNPM F+NP+II S + S+Y+EGCLS+P A++ RS Sbjct: 61 LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 V+Y+D Q + A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K + Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180 Query: 170 D 170 D Sbjct: 181 D 181 >gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1] gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1] Length = 175 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ ++I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K K + Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169 >gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44] gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44] Length = 170 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D + Sbjct: 61 IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27] gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707] gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27] Length = 167 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAAVQ+ V ++VV Sbjct: 1 MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I + +EGCLS+P+ V R+A ITV Y+D Q Sbjct: 61 IDISEDKSSP---LVLINPEIVARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + LLATC+QHELDHL G LFID+ S LKR I KK K +L Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165 >gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45] gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45] Length = 172 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P+++ PDP L++ + P+ ++ ++ L D+ML MY GIGLAA Q+GVL R++V+ Sbjct: 1 MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P++ NP+I+ SDD + Y+EGCLSIP+ ADV R A + VR++D + + Sbjct: 61 DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRE 168 >gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 170 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I L+ +MLE MY GIGLAA QI V R++V Sbjct: 1 MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PM INP+I+ S++ + +EGCLS+P V+RS + V+ +D N Sbjct: 61 IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166 >gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 169 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+EKI+ I LI +MLE M +GIGLAA QI V R+VV Sbjct: 1 MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + IT D ++ +EGCLS+P+ A V+R+ ITV +D N Sbjct: 61 IDVSEKQDNPQ---VFINPEITHMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822] gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis] gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I] gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50] Length = 170 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VV Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + V INP+I SD+ Y+EGCLS+P +V+R+A I + +D Q Sbjct: 61 IDVSEEGNDLR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLLA C+QHE+DHL+G +F+++LS LK++ I K+ K + + Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAEREAE 168 >gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B] gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B] Length = 180 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI +++E M G+GLAA QIGV R+ V Sbjct: 1 MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + S++ EGCLS+P +KR+ + + + Sbjct: 61 YDVDGVVGHLV------NPSLDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I+ LLA C+QHE DHL+G+LFID L +R + + + + Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIRE 158 >gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45] gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45] Length = 176 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L+++ P+ ++ D+ L D+MLE MY GIGLAA Q+G+L+RL+V+ Sbjct: 4 MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D QD+ P+V INP+I+ SD+ SVY+EGCLSIPD ADV+R + V ++D + Sbjct: 64 DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173 >gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143] gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143] Length = 168 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++ ++ ++ I L+D+ML MY GIGLAA QI + R+VV Sbjct: 1 MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P VFINP+II Y+EGCLS+P + V R I V+ +D + Sbjct: 61 IDVSE--TGDQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +GLLA C+QHE+DHLNG LF+DH+S+LKR I K+ K + Sbjct: 119 PFELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166 >gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 169 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P++KI+S I L+ +MLE M +GIGLAA QI V R+VV Sbjct: 1 MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + IT D ++ +EGCLS+P+ A V+R+ +TV+ +D N Sbjct: 61 IDVSEEQD---KPQVFINPEITHMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKR I K+ K +L Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165 >gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8] Length = 170 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+I SDD+ +Y+EGCLS+P DV+R++ I + +D + + Sbjct: 61 IDVSED--SNQLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F+++LS LK++ I ++ K + Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKKAERE 166 >gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] Length = 168 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167 >gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2] gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2] Length = 175 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+ ++ +I L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ + +P FINP+I+ S + +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K K + Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169 >gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999] Length = 169 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ IN I L+ +M E M + G+GLAA Q+ V +++V Sbjct: 1 MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + + +EGCLS+P+ A V+R+ +I V ++ + + Sbjct: 61 MDVSDDQDTPL---VFINPKVIEQRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LF+D+LS LKR I KK+ K ++ Sbjct: 118 EFTMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEARI 165 >gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498] Length = 176 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 91/170 (53%), Positives = 122/170 (71%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LVI PDPILR VS+ +E+I+ I L D+MLE MY+ GIGLAAVQ+GV R++V Sbjct: 1 MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ KNP+V INP+I+ SD+ SVY+EGCLSIPDY A+V+R + + Y D + Sbjct: 61 VDIHSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K K ++++ Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170 >gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34] Length = 169 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + IT +EGCLS+P R V R+A ++V +D N + Sbjct: 61 IDVSEERNQPM---VLVNPKITEEHGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 170 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 172 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++I PDP L++ P+ ++ + L D+MLE MY+ GIGLAA QIG++ RL+V+ Sbjct: 1 MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+I+ S++ +VY+EGCLSIP+ A+V R + VR++D + Sbjct: 61 DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16] gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16] Length = 168 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+ ++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK + I K+ K + R Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167 >gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 170 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + I + +EGCLS+P RA V R+ ++ VR +D + + Sbjct: 61 IDVSENREDPL---VLINPEIIEQAGSTGIEEGCLSVPGSRALVPRAEWVKVRALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 AFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H] gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 171 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P+ I +ID+ML MY +G+GLAA Q+ + R+VV Sbjct: 1 MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + P++FINP+II S++ S+ +EGCLS+P A V R TV+ +D + + Sbjct: 61 MDTSEDNDQ--PIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A L + C+QHELDHL G+LF+D+LS LKR I KK+ K + Sbjct: 119 EFSLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165 >gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336] gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336] Length = 170 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D K + + I S + +EGCLS+P R V R + V+ + + Sbjct: 61 I---DIEGTKENQIVLINPKILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL + Sbjct: 118 EFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165 >gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444] Length = 176 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 1/167 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ PDP L++VS+P+E + DI L+D+MLE MY GIGLAA+QIGV R++ Sbjct: 1 MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+DL P F+NP+I+ ++ Y+EGCLS+PD V+RSA +RY+D + Sbjct: 61 VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +A+ L A C+QHE+DHL G LFID+LSRLKRD K+ K Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKKAK 167 >gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N] gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N] Length = 170 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++V Sbjct: 1 MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+I S++ VY+EGCLS+P +VKR+A I + +D + + Sbjct: 61 IDVSEDGNEL--RALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHE+DHL+G +F+++LS LK++ I ++ K + Sbjct: 119 VFEFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKKAERE 166 >gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 170 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +V INP+I SDD+ +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 61 IDVSEE--SNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K + Sbjct: 119 PFEFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166 >gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT] gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT] Length = 170 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + ++ IDNM E MY +GIGLAA Q+ V R++ Sbjct: 1 MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D K + + I S + +EGCLS+P R V R + V+ + + Sbjct: 61 I---DIEGTKENQIVLINPEILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR + +K+ KL + Sbjct: 118 DFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165 >gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12] gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon] gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12] Length = 170 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +V+D+ + + PMVFINP+I+T D + CLS+P ADV R+ I VR++D Sbjct: 61 FMVVDVSEEKNA--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003] Length = 178 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L+++ P+ ++ I L D+MLE MY G+GLAA QIGV+ R+ V Sbjct: 3 MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62 Query: 61 IDLQDHAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D MV INP+I S++ +V++EGCLS+P+ ADV R + +R++ + Sbjct: 63 MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC QHELDHLNG LFIDHL LKR M+T+K+ KL + Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKLKRE 171 >gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354] Length = 190 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 21/187 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS+P+E + + D+ L+D+M E MY+ +GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60 Query: 59 VVIDLQDHAHRKNPMVF-------------------INPKIITFSDDFSVYQEGCLSIPD 99 +VIDLQ P+ INP+I+ +++ + YQEGCLS+PD Sbjct: 61 LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TVR+ D + + +GLLATC+QHE+DHL GILFIDHLSRLKR M Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180 Query: 160 KKMSKLV 166 KK+ KL Sbjct: 181 KKLKKLR 187 >gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34] Length = 168 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L +V++P+E ++ I L+ +M E MY GIGLAA Q+ V R++V Sbjct: 1 MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP++ S++ V++EGCLS+P+ V+R + VR +D + Sbjct: 61 IDISESRDELM--VFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL+G +F+++LS LK I K+ K V+ R Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167 >gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1] Length = 170 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + PMVFINP+I+T D + CLS+P ADV R+ I VR++D Sbjct: 61 FMVIDVSEEKNV--PMVFINPEIVTKEGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida A449] Length = 170 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E ++ +++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + I + +EGCLS+PD+RA V R+ ++ VR +D N Q Sbjct: 61 IDVSENREDPL---VLINPEILEQAGSTGIEEGCLSVPDHRALVPRAEWVKVRALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165 >gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 170 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + P+ E + L+D+M MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217] gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217] Length = 172 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P+ ++ + L +M E MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D P+ +NP+I FSD SVY+EGCLSIPD ADV R A + VR+MD + Sbjct: 61 DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168 >gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14] gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14] Length = 169 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + IT +EGCLS+P R V R+A ++V +D + + Sbjct: 61 IDVSEERNQPM---VLVNPEITEERGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGLLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c] gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1] gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23] gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c] gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1] gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23] gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 170 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + + E ++S L+D+M E MY+ GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + PMVFINP+I+T D + CLS+P ADV R+ I VR++D Sbjct: 61 FMVIDVSEEKNV--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K + Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167 >gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199] Length = 175 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 108/156 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PDP+L+ R ++ ++ ++ LID+M + MY G+GLAA Q+GV R++V Sbjct: 1 MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ +NP+I+ SD +Y+EGCLS+P+ ADV+R++ + VRY+D + Sbjct: 61 VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q I +GLLA CLQHE+DH++G+LF+DH+S LKR+ Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKRN 156 >gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas tunicata D2] Length = 167 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ +++ I ++ +M + MY GIGLAA Q + R+VV Sbjct: 1 MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + IT D ++ +EGCLS+P+ A V R+ +TV+ ++ + Q Sbjct: 61 IDVTEDKSDQL---VLINPEITKKDGSTISEEGCLSVPNSYAKVDRAETVTVKALNLDGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LF+D+LS LKRD I KK+ K ++ Sbjct: 118 EFSLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165 >gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2] Length = 181 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L+++ P+ KI +I L ++MLE MY GIGLAA Q+GV +L+V+ Sbjct: 1 MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60 Query: 62 DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D PM NP + S+D S Y+EGCLS+P+ A+++R + + VR+ + Sbjct: 61 DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + GL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL + Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKLKR 167 >gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827] Length = 174 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ V R+ + VR +D N Sbjct: 61 IDVSETRDQRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEHVKVRALDYNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL ++R Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166 >gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille] gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ + I L+ +M E MY G+GLAA Q+ V +++V Sbjct: 1 MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + +INP+II S + VY EGCLS+P V+R A + VR D + + Sbjct: 61 IDTSETHTELR--AYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 QFELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166 >gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278] gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium sp. ORS278] Length = 175 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VS+P+EK+ +I L+D+M + MY GIGLAA+Q+ R++ Sbjct: 1 MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ P VFINP+II SD+ SVY+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K + Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171 >gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149] gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149] Length = 175 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++++ P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+ V+ Sbjct: 4 MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63 Query: 62 DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+V NP++I SD+ +VY+EGCLSIP+ ADV R A + +R+MD + Sbjct: 64 DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q GL ATC QHE+DHL+G LFID+L LKR MIT+KM KL + Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKLKRE 171 >gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130] gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130] Length = 193 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 81/186 (43%), Positives = 123/186 (66%), Gaps = 18/186 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PDPILR S+ +E+++ ++ +D+M + MY GIGLAAVQ+G R+ V Sbjct: 1 MALLPIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFV 60 Query: 61 IDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 +D + A ++P+ INPKI+TFSD+ S+Y+EGCLSIPDY A Sbjct: 61 VDCSERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYA 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +V+R A + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK Sbjct: 121 EVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKF 180 Query: 163 SKLVQL 168 +K+ + Sbjct: 181 TKIAKQ 186 >gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685] gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685] Length = 171 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLS+P+ RA V R+ ITVR +D + + Sbjct: 61 IDISENRDQRL---VLINPELLQKGGETGIEEGCLSVPEQRALVPRAETITVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118] Length = 169 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ ++ + LI +MLE MY GIGLAA QI V RL+V Sbjct: 1 MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+V INP+++ S + + +EGCLS+P V+R +TV +D Q Sbjct: 61 VDVSEERDA--PLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K + Sbjct: 119 SRLIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQRE 166 >gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972] gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218] Length = 170 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ V R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + +I +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 I---DISETRDEPMVLINPVILEKRGEDGIEEGCLSVPGARALVARAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 118 EYTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167 >gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72] gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 167 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L R + P++ ++ D+ LID+M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I D V +EGCLS+P V R+ +TVR +D N Sbjct: 61 IDISEDKSGL---MALINPQILERDGEQVCEEGCLSVPGVYEKVTRAERVTVRALDRNGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F+++LS LK I K++K ++ Sbjct: 118 PFEVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKARI 165 >gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont] Length = 170 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P+ +N+D+ ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + + + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 I---DVSESREERLVLINPELLEKSGETGMEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHELDHL+G LFID+LS LKR I +K+ KL + Sbjct: 118 SFELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165 >gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii] Length = 170 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L + ++P+ ++ I L+ +M + MY G+GLAA Q+ V R+VV Sbjct: 1 MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + V INP+I SD+ Y+EGCLS+P +V+R+A I R +D + Sbjct: 61 IDVSEEGNELR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHELDHL+G +F+++LS LK++ I K+ K + Sbjct: 119 PYEAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKKAERE 166 >gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 170 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + ++P+ +++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + INP+I SDD +Y+EGCLS+P +V+R++ I + +D + + Sbjct: 61 IDVSEDSNEL--LALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F+++LS LK++ I K+ K + Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166 >gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18] gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18] Length = 175 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 115/169 (68%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR +S+P+E +++++ L D+M E MY GIGLAA+Q+ RL+ Sbjct: 1 MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ P FINP++I+ S++ +VY+EGCLSIP+Y A+V+R + +RY D + Sbjct: 61 MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K K + Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169 >gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 170 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I +ID+M E MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + ++ + + +EGCLS+P+ R V R I ++ +D + Q Sbjct: 61 IDVSEDRKQLLVLINPELLNES---GETGIEEGCLSVPEQRGFVPRFEQIKIKALDYHGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166 >gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14] gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14] Length = 175 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 4/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR VSRPIE + +I L D+M E MY GIGLA +QI R++ Sbjct: 1 MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60 Query: 61 I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ P +FINP+I++ S++ S Y+EGCLSIP+Y +V+R A + VR+ D Sbjct: 61 MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K +L Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172 >gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 173 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P++K+++ I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + + + +EGCLSIP+ V R+ + VR ++ N + Sbjct: 61 IDVSETRDDRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEQVKVRALNYNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573] gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573] Length = 169 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 199 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N + ID+M E MY GIGLAA Q+ ++L+V Sbjct: 30 MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R IT +EGCLS+P A V R+ F+T++ +D + + Sbjct: 90 MDLQDEVERPK---VFINLEITAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGK 146 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 147 EFTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194 >gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM 30120] Length = 173 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR V++P+EK+++ I +ID+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + +N + + + + + +EGCLS+P+ V R+ + VR ++ N Sbjct: 61 I---DVSESRNERLVLINPELLNKEGETGIEEGCLSVPEQHGFVPRAEKVKVRALNYNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +LR Sbjct: 118 AFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166 >gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179] Length = 171 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+EK++ +I IDNM E MY +GIGLAA Q+ R++ Sbjct: 1 MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I SD + +EGCLS+P +R V R +TV+ +D N + Sbjct: 61 IDVEGDKSNQL---VLINPEIVESDGETGIEEGCLSVPGFRGLVPRKEKVTVKALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A LLA C+QHE+DHLNG++F+D+LS LKR+ I K+ K + + Sbjct: 118 PFTLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVKYKKQLE 167 >gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603] gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223] gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451] gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603] gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451] gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223] Length = 169 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 171 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + L+D+M + MY GIGLAA QI +++V Sbjct: 1 MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + I +EGCLS+P A V+R+ + D Sbjct: 61 MDHSEDRSEPK---VFINPKIIEEKGHFTNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LL+ C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165 >gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015] gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015] Length = 169 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ FPDP LR+ +P+E+++ ++ ID+M E MY GIGLAA+Q+ RL++ Sbjct: 1 MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + NP+VFINP+II + CLS+P + +V+R+ I V+ +D + + Sbjct: 61 TDVSED--ASNPLVFINPEIIEADGVEVTQEG-CLSVPGFYENVERAEHIVVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + DGL A C+QHE+DHL+G LF+D+LS LKR+ I Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155 >gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 173 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++I+P P+L++ +RP+ K++ + L+ +M E MY+ DG+GLAA Q+G+L R++V+ Sbjct: 1 MVREILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P+ INP+I+ + + CLSIP DV R+A +TV+++D + Q Sbjct: 61 DTTPRQPDSKPLAMINPEIVGMEGATTYTEG-CLSIPGEAEDVDRAAIVTVKFLDVDGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q + D LLA +QHE DHL+G +F+DH+S LKR++I K+M +L R+ Sbjct: 120 QTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168 >gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53] gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53] Length = 180 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 78/169 (46%), Positives = 110/169 (65%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++I PD LR S+P+E ++ ++ L D+M E MY GIGLAA+QI RL+ Sbjct: 1 MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D ++ + P FINP+II S + VY+EGCLSIP+Y A+V+R A + +RY D + Sbjct: 61 MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K K + Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169 >gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113] gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113] Length = 167 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LRR ++P+ ++ I L D+MLE MY GIGLAA+Q+ V ++VV Sbjct: 1 MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I + +EGCLS+P+ V R+A ITV Y+D Q Sbjct: 61 IDISEDKSSP---LVLINPEIIARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + LLATC+QHELDHL G LFID+ S LKR I KK K +L Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165 >gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 181 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+ +F DP+LR + P++ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++D + S+D +EGCLSIP R+ + + + Sbjct: 61 YCVEDRLGHLV------NPTLDLSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA C+QHE DHL+GILFID + +R KL++ + Sbjct: 115 PITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAM----KLIRQAE 160 >gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1] Length = 167 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + + P+ ++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R+ + VR +D + Sbjct: 61 IDVSEDRSTL---RAFINPEILEKSGEQTCEEGCLSVPGVYEKVTRAERVKVRALDERGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F+++LS LK I +++K ++ Sbjct: 118 PFELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKARI 165 >gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193] gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193] Length = 172 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++I PDP L+++ P+ ++ + L D+MLE MY+ GIGLAA QIGV+ RL+V+ Sbjct: 1 MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ P+V NP+II+ S++ +VY+EGCLSIPD A+V R + V+++D N Sbjct: 61 DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q DGL ATC+QHE+DHL+G LFID+L LKR MIT+KM KL + R Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169 >gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586] gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586] Length = 169 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +ID+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ D N Q Sbjct: 61 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKAQDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKVKRFNE 167 >gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 171 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PD +L +S PI ++ +I L +M E MY+ G+GLAA Q+G+ RL+V Sbjct: 1 MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + + D +EGCLS+P Y A VKRS+++ VRY+D + Q Sbjct: 61 LDCGGEENPELIKAVNPEILERQGDSCE--EEGCLSVPGYYAAVKRSSWVKVRYVDMDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLA C QHE+DHL+G LF+D LS LK+ M KK K+++ + Sbjct: 119 TVEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILEQQ 167 >gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB] gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB] Length = 170 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + + + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z] gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z] Length = 183 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V+ P+ + N ++ ID+M + MY +GIGLAA Q+ V R++ Sbjct: 13 MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ KN + + + S+ + +EGCLS+P +R V R ITV+ ++ + Sbjct: 73 IDISGE---KNEQLVLINPELLDSEGETGIEEGCLSLPGFRGFVPRKEKITVKALNRYGE 129 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K + Sbjct: 130 EFTLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVKYQRQ 177 >gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby] gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris] gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens] gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby] gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b] Length = 170 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD LR++++P+E + + LI++M + MY G+GLAA QIGV RL V Sbjct: 1 MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I I S ++EGCLS+P V R+ +TV+ +D + Sbjct: 61 IDIVGDKK---EQIVIVNPEIVSSHGEKEFEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +GLLA CLQHE+DH+NG LF+D LS LKR M +K+ K +L+ Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166 >gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 173 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 115/170 (67%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PD LR+ + P+ ++ + L+D+MLE MY GIGLAA Q+GVL R++V Sbjct: 1 MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D+ + P++ NP+II SD+ + QEGCLSIPD ADV R + VRY+D + Sbjct: 61 MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ + + Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKMQRNK 170 >gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7] Length = 170 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+++++ I L+ +M E MY G+GLAA Q+ V R+VV Sbjct: 1 MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+I+ SD+ VY+EGCLS+P +V+RSA I VR ++ + Sbjct: 61 IDVSED--GNDLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA C+QHELDHL G +F+++LS LK++ I ++ K + Sbjct: 119 PYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166 >gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 180 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+PDP+LR + + ++D+ L+D+M++ M+ +G GLAA Q+GV R+ V Sbjct: 1 MSVLPIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 INP D+ EGCLSIP+ R + +D + + Sbjct: 61 FGC-----GGREGHIINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I +LA C+QHE DHL+G+LF+ L R K + Sbjct: 116 SLAIEGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIR 158 >gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1] gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1] Length = 190 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 81/188 (43%), Positives = 105/188 (55%), Gaps = 21/188 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P+ ++ N ++ L ++M E MY GIGLAA+Q+GV RL Sbjct: 1 MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDF-------------------SVYQEGCLSIPD 99 +VIDLQ P+ + S Y EGCLS+P+ Sbjct: 61 LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ADV R A TV+Y D + H +GLLATCLQHE+DHL GILFIDHLSRLKR+M Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180 Query: 160 KKMSKLVQ 167 KK+ KL Q Sbjct: 181 KKLKKLRQ 188 >gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65] gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65] Length = 171 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E++ LID+M E MY GIGLAA Q+ V +++V Sbjct: 1 MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P VFINPK+ + QEGCLS+P + DV+R + +D N Q Sbjct: 61 MDISEDRSE--PHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A GLLA C+QHE+DHLNG LF+D+LS KRD I KK+ K +L Sbjct: 119 PYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQHRL 166 >gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202] gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305] gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202] gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ ++ ++ ID+M + MY +GIGLAA Q+ VL R++ Sbjct: 1 MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEIIESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHLNGILF+DHLS LKR I +KM KL + Sbjct: 118 EVVYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKLKKQ 165 >gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1] gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1] Length = 169 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++++PDP LR + P+ +++ + L+D+MLE MY GIGLAA Q+G R+ V Sbjct: 1 MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ + + S +EGCLSIP Y DV R+ + R +D +AQ Sbjct: 61 IDVSEERDE--PLVLINPEILEATGEASG-EEGCLSIPGYYDDVARATRVRYRALDRDAQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LA CLQHE+DHL+G LFID+LS LKR + K+M K +L Sbjct: 118 PIEGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165 >gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341] gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341] Length = 190 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYRFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ + R++V Sbjct: 1 MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D +N + + + + + +EGCLSIP+ RA V R+ + +R +D N Q Sbjct: 61 IDVSD---TRNERLVLINPELLEKNGKTGIEEGCLSIPEQRALVSRAEKVKIRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 SFELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166 >gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1] gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + + + + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I K+ KL + Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103] gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103] gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++++N+D+ ++D+M E MYS +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA C+QHE+DHL+G LFID+LS LKR I K+ KL + Sbjct: 118 SFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLARQ 165 >gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 170 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP LR+ ++P+ +I+ +I LID+M E MY+ G+GLAA QIG +R+ + Sbjct: 1 MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ N +VFINP+I+ + + CLS P D+KR+ +TVR + Sbjct: 61 VDIAADDEPSNLLVFINPEIVRQEGQLTGPEG-CLSFPGISEDIKRAERVTVRARGRDGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I ADGLLA +QHELDHL+G+L ID + LK+ ++ +KM K Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163 >gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 172 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P++ +PDP L +V++P+ +++ + L+ +MLE MY ++G+GLAA Q+ V RL V Sbjct: 1 MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + PMVF+NP+I+ S++ +++EGCLS+P V R+A +TVR +D Sbjct: 61 MDTSPEHDQ--PMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I DGL A C QHE+DHL+G +F+++LS LKR+ I KM+K + Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTRE 166 >gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506] gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506] Length = 182 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 89/178 (50%), Positives = 127/178 (71%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLVI PD LR +S PI ++++ + ++++M E MY GIGLAAVQ+G+ R++ Sbjct: 1 MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60 Query: 61 ID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D + +KNP+ INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V Sbjct: 61 VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++ Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178 >gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 169 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3] gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3] Length = 167 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++ ++ I L+D+M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + VFINP+I+ SD VY+EGCLS+P +V+R + VR + + Q Sbjct: 61 IDTSEDKNALQ--VFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL + Sbjct: 119 PFELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKLER 165 >gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187] gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187] Length = 167 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ PIEKI SD+ ++I++M E MY +GIGLAA Q+ + RLVV Sbjct: 1 MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ + + + +EGCLS+P+ RA V R+ +I VR +D + + Sbjct: 61 VDTSENRDQPM---VFINPELIEKRGETGIEEGCLSVPECRAFVPRAEWIKVRALDRHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGLLA CLQHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFEIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARN 165 >gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E] gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E] Length = 171 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ ++ P+ + N ++ ID+M E MY +GIGLAA Q+ V R++ Sbjct: 1 MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + + + +EGCLS+P R V R +TV+ ++ + Sbjct: 61 IDITGEKT---EQLVLINPELLDGEGETGIEEGCLSLPGLRGFVPRKEKVTVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL + Sbjct: 118 EFTLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKLQKQ 165 >gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 169 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++ +I ++D+M + MY+ +GIGLAA Q+ V R++V Sbjct: 1 MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + SD + +EGCLS+P++RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLSSDGETGIEEGCLSVPEHRALVPRAERVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P++ +P P L + P+ N I L+++M E MY+ G+GLAA Q+G+L R+VV Sbjct: 1 MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D VFINP+II D ++EGCLS+ VKR + V + + Sbjct: 61 IDITDDNSDLL--VFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + GLLA C+QHE+DHLNGI+FIDHLS+LK+ K+ KL + Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKLRRE 166 >gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ] gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ] Length = 166 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P++ FPDP+L++ S P+ I +I+ L +M E MY G+GLAA QIGVL R++VI Sbjct: 1 MIRPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + INP +I + + +EGCLS+PD+ A+VKR + V+ + Q Sbjct: 61 DVAAKNEPPQLITAINPVVI-HGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I +ADGLLA QHE+DHL+GILF+D LS LKRD+ KK K Sbjct: 120 RIWHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162 >gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 189 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ LI +M E M DG+GLAA Q+GV ++ Sbjct: 1 MAILEIRIMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP + + EGCLS+P V+R VR MD N Sbjct: 61 YRIGE-----LSGHVINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +I ADG+LA C+QHE DHLNG LFID L+ R + + Sbjct: 116 PVLIEADGMLARCMQHETDHLNGKLFIDRLTGDDRRAAMRTIR 158 >gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3] gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3] Length = 170 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR V++ + +++++ +M++ MY +G+GLAA Q+ + R+VV Sbjct: 1 MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+II+ S + + CLS+PD AD+ R+ F+TV++ D Sbjct: 61 IDVSDERDD--PIVLINPEIISQSGEECSQEG-CLSVPDINADITRAEFVTVKFQDVQGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I AD LLA C+QHELDHL G LFID+LS K+ I K+ KL + + Sbjct: 118 AQQIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKLQRQNE 167 >gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 183 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 14 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 74 FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 130 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 131 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180 >gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110] gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110] Length = 173 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY GIGLAA Q+ V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+II SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSEERNE--PLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+GLLA C+QHELDHL G +F+++LS LKR+ I K+ K + Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166 >gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli] gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli] Length = 168 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ PD LR + I ++ + LID+M E MY+ GIGLAA QI + +L V Sbjct: 1 MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + I ++ +EGCLS+P R+ ++ ++ +D N + Sbjct: 61 IDVTNNKSHTL---CLINPTIVEKKGEALLEEGCLSVPGIYDKAPRALWVKLQALDRNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I A+GLLA C+QHE+DHLNG LF+DHLS LK+ + KK+ K+ + R Sbjct: 118 PYEIEAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166 >gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814] gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814] Length = 181 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 105/157 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ P+P+L+ VS+P++ + +I L+D+MLE MY GIGLAA+QIG R++V Sbjct: 1 MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D NP F+NP+I+ + Y EGCLS+P+ ++R + ++Y++ + Sbjct: 61 MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I +A+GL ATC+QHE+DHL G LFID+LSRLKR Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKRTR 157 >gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4] gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4] Length = 170 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++PI + N+++ IDNM E MY GIGLAA Q+ ++L+V Sbjct: 1 MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I +EGCLS+P A V R+ F+T++ +D + Sbjct: 61 MDLQDDVERPK---VFINLEIIEKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR] Length = 174 Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD LR+V++ IEK++ +I ++ID+M E MY G+GLAA Q+ V RL V Sbjct: 1 MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + IT ++ EGCLS P A V+R+ ITV +D N + Sbjct: 61 SDCSEDQNEPL---VFINPEITEAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K +L + Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLAE 167 >gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 177 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 1/170 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + I+PD +L++ + + + N ++ L+++M E MY G+GLAA QIG+L ++VVI Sbjct: 1 MIREIRIYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVI 60 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + + + I + V +EGCLS+P VKR+A+ V+ + + Sbjct: 61 DLHSGKEKQGKEQIILINPEIVALEGEEVKEEGCLSLPGLYKKVKRAAYAKVKAQNLKGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 II +GLLA QHE+DHLNGI+FID LS L+R + +K KL + + Sbjct: 121 EFIIEGEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKLKRKYE 170 >gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 170 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+D+ IDNM + MY GIGLAA Q+ L++ Sbjct: 1 MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R IT D +EGCLS+P A+V R+ +T++ D Sbjct: 61 MDLQDDVERPT---VFINMEITARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGV 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHELDHLNG LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 263 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 17/183 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 I D +D NP + + + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251 Query: 164 KLV 166 K++ Sbjct: 252 KII 254 >gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B] Length = 167 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+ + + + ID+M E MY +GIGLAA Q+ RL+V Sbjct: 1 MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I +EGCLS+P A V R+ ITV+ +D N Sbjct: 61 MDLQDEVERPK---VFINPEIVAKSGDFCNEEGCLSVPGVYAKVDRAELITVKALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAARN 165 >gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755] gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165] gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755] gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165] Length = 170 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L +V +P+E +++++ IDNM + MY +GIGLAA Q+ VL R++ Sbjct: 1 MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP RA V R +TV+ ++ Q Sbjct: 61 IDIEGDKTNQI---VLINPEILESSGETGIEEGCLSIPGCRALVPRKEKLTVKALNREGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNG+LF+DH+S+LKR I +KM KL + Sbjct: 118 TFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQ 165 >gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ +RP+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 I D +D NP + + + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 VKR + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 192 VKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251 Query: 164 KLV 166 K+ Sbjct: 252 KIS 254 >gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 170 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 MV P++ FPDP LR + P++ + L+D+M + MY GIGLAA Q+ V R Sbjct: 1 MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ D + P VF+NP+I++ + + CLS+P ADV R+ ITVRY+D Sbjct: 61 FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K + Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167 >gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52] gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395] gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587] gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33] gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27] gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52] gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587] gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33] gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395] gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2] gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395] gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27] gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1] Length = 169 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 61 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121] gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121] Length = 169 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR V++P+ N + ID+MLE MY +G+GLAA Q+ RLVV Sbjct: 1 MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + +PMVFINP+ D + QEGCLS+P + + R+A + V +D N Sbjct: 61 MDFSEE--KNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GLLA C+QHE+DHL+G L +D+LS LKR+ I K+ K + Sbjct: 119 EFEKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVKNQK 165 >gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756] gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756] Length = 173 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + +L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G Sbjct: 1 MAIRRILTVDNAADLAVLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++ +DL P F+NP+I+ S++ VY+EGCLS+P+Y +V+R A +T+RYM+ Sbjct: 61 RVITMDLAREGEEPAPRYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL A C+QHE+DHL G+LFIDHLSRL+RD K+ K + Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKKARR 171 >gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 173 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales bacterium HF0010_22E23] Length = 170 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P +A V R+A +TV+ +D + Sbjct: 61 IDVSE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGSQALVPRAAEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + Sbjct: 118 EYQFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKIKR 164 >gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 172 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R PMV INP+II + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDVSD--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 182 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P+ + ++ L+ ++ + M +G GLAA QIGV R+ Sbjct: 1 MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP + + +EGCLS P R+ + + + Sbjct: 61 Y-----NVDGQLGHLVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I L+A CLQHE DHL+GILFID ++ R + K + + Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIRE 159 >gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36] gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36] Length = 167 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD L+++++P+++I +ID+MLE MY+ +GIGLAAVQ+ +L R+VV Sbjct: 1 MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + + + ++T + +EGCLS+P+ RA V R+ +TV +D + Sbjct: 61 I---DVSGTRGEPLILINPVLTNKCGETGIEEGCLSVPESRAFVPRAESVTVTALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA CLQHE+DHLNG LFID+LS LK+ I KK+ KL + Sbjct: 118 EFTLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLARQ 165 >gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313] Length = 185 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 75/181 (41%), Positives = 119/181 (65%), Gaps = 11/181 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P+ +LR S +++++ D+ L+++MLE MY+ GIGLAA+Q+GV R++V Sbjct: 1 MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60 Query: 61 IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D+ RKNP+ F+NP+IIT S + S Y+EGCLS+P A++ R Sbjct: 61 LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++Y+D Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K + Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180 Query: 170 D 170 D Sbjct: 181 D 181 >gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255] gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255] Length = 172 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 75/168 (44%), Positives = 111/168 (66%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+++ PDP L+++ P++ ++++ L D+M+E MY G+GLAA Q+ R+ V Sbjct: 1 MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D P+V INP+II+ S++ + Y EGCLS+PD DV+R + + ++D + + Sbjct: 61 MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL + Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKLKKE 168 >gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93] gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93] Length = 190 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3] Length = 172 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 1/170 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +PDP L++ P+ ++ +I L +MLE MY+ G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D K P V INP + + D S + +YRADV R + + ++ D + Sbjct: 61 DPAGKDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A +QHE DHL+GILFID +SRL+R + K+ K ++ ++ Sbjct: 121 GIEEDLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170 >gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114] gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114] Length = 175 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L++ + P+ I+ ++ L D+MLE MY GIGLAA Q+G+L R+VV+ Sbjct: 4 MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63 Query: 62 DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P++ NP++I SD+ SVY+EGCLSIP+ A+V R A + VR+MD + Sbjct: 64 DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q GL ATC QHE+DHL+G LFID+L L+R MIT+KM KL + Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKLKRE 171 >gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886] gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886] Length = 170 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+MLE MY DGIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R++ +TV+ +D + Sbjct: 61 IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRASEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LK+ I +K+ K+ + Sbjct: 118 EYQFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKIKR 164 >gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 178 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +++ PDP L+ V+ P+ ++ + L D+MLE MY+ GIGLAA Q+G++ R++V Sbjct: 4 MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63 Query: 61 IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D D PMV INP++I S D ++Y EGCLSIPD A+V+R A + V +M+ + Sbjct: 64 MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q L ATC+QHE+DHLNG LFID+L L+R MIT+KM KL + Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKLKRE 172 >gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 179 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 3/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ DP+LR+ PI +I ++ L +MLE MY G GLAA QIG RLVV Sbjct: 1 MAILPIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVV 60 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID + D + ++F Y EGCLS+P+ +V R +TVR+ D N Sbjct: 61 IDTAIPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDIN 120 Query: 119 AQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q I+ +GL A C+QHE DHLNG LF+D +S R M K+ K+ + Sbjct: 121 GEAQEIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAKE 171 >gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP] gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP] Length = 171 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY GIGLAA Q+GVL R++ Sbjct: 1 MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP YRA V R ITV+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKITVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I +AD L A C+QHE+DHLNGI+F+DH+S LKR I KM KL + Sbjct: 118 EVIYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165 >gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 165 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 115/168 (68%), Positives = 144/168 (85%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV Sbjct: 1 MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + K+P+VFINP I++ S+D SV EGCLSIP++RADVKR++F+TV+Y+D NAQ Sbjct: 61 I----DLNTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI K+ KL++ Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIRN 164 >gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10] Length = 190 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146] Length = 171 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + D + +EGCLS+P+ RA V R+ I VR +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAENIKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 SFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202] gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202] gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60] Length = 171 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ ++ +I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + D + +EGCLS+P+ RA V R+ I VR +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAESIKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166 >gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++ P+ + I L+ +M E MY+ G+GLAA Q+ V ++VV Sbjct: 1 MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D KN VFINP+I+ S+D VY EGCLS+P V+R A + VR D + + Sbjct: 61 IDVSDD--GKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 AFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166 >gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 213 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ I DP+L R P+E+ + + L+ +M MY+ +G+GLAA QIGV R+ V Sbjct: 8 TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD ++ +NP + D EGCLS+P ++ R + V +D + Sbjct: 68 DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSAEGCLSVPGPHHELARPDYARVTGVDLH 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + G A CLQHE DHL G L+ID LS+ +R + +M ++ + + Sbjct: 128 GEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178 >gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25] gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25] Length = 172 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01] gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01] Length = 172 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKIKRFNE 167 >gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5] gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5] Length = 171 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 102/167 (61%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PDP+L+++S+P+ + +S + L+ +M + MY+ +G+GLAA QIG+L R+ V+ Sbjct: 1 MIHPILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + I + + ++EGCLS+P Y ++KR I V++ D Q Sbjct: 61 DPASGKEEEAQPLVLINPQILSGEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DG A QHE+DHLNG LFI+HL +RD+I +K+ K ++ Sbjct: 121 QTAILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMKE 167 >gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 173 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 77/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++I PDP L++V P++ I+ + L D+MLE MY GIGLA QIGV+ R++V+ Sbjct: 1 MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D P+V +NP++I SD + Y+EGCLSIPD A+V R + VR++ + + Sbjct: 61 DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGL ATC+QHE+DHL+G LFID+L +KR +IT+KM KL + Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKLKRE 168 >gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP LR+V P++ + + L +MLE MY GIGLAA Q+GV+ RL+V+ Sbjct: 1 MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +D P+V +NP+I FS++ SVY+EGCLSIPD ADV R A + +R+MD + Sbjct: 61 DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + Sbjct: 121 EHQEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168 >gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata] gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata] Length = 182 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+ +++E M+ G+GLAA Q+GV R+ Sbjct: 1 MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP + FS++ +EGCLS+P ++KR + + + Sbjct: 61 YHVDGEVG-----HLVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GLL+ C+QHE DHL+G+LFID L + K + + Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPETKKAAMKAIRE 159 >gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4] gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7] gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3] gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4] gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7] gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3] Length = 168 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR + P+ + +++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVDRPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165 >gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 172 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++ + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380] Length = 170 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++NS+I ++D+M + MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165 >gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 167 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 107/167 (64%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E+I ++ +NM+E MY +G+GLAA Q+ RLVV Sbjct: 1 MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ I +I + +EGCLS+P+ A+VKR+ F+T+ Y+D + Sbjct: 61 IDVSEQRNQAM---VIINPVIVEHSGEEISEEGCLSVPETNAEVKRAEFVTLEYLDIEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q++ ADGLLA CLQHE+DHLNG LFID+LS LK+ I K+ KL + Sbjct: 118 QQVLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKLQR 164 >gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 168 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165 >gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976] gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976] Length = 170 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP YRA V R + V+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 118 EVIYDADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165 >gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757] gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 206 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 38 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 98 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 154 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 155 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 204 >gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 169 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E I +I +ID+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + IT +EGCLS+P RA V R+A ++V +D N Sbjct: 61 I---DTSETRDQPMVLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVTALDRNGD 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 TICFDADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKRHNE 167 >gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 170 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEILGSCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165 >gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16] gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16] Length = 172 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ ++ + + Sbjct: 61 IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 181 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP D+ EGCLSIP D R + R + + + Sbjct: 61 YHCDGFAG-----HMVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + LLA C+QHE DHL+G++F+D L R +++ Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIR 158 >gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301] gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301] Length = 166 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P++++++ I LID+M E MY GIGLAA Q+ +L++ Sbjct: 1 MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + K+ + I Y+EGCLS+P V R+ +TV +D N + Sbjct: 61 I---DTSETKDHLQVFINPKIIEKSGVQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLL+ C+QHE+DHL G +F+++LS LKR I KM KL + + Sbjct: 118 PFTLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTRHK 166 >gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1] Length = 172 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P+PILRR S+ +++I+ ++ LID+M+E MY+ G+GLAA Q+GV R++VI Sbjct: 1 MVLKIVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + INP I+ + + +EGCLSIP A+V+R+A + V+ +D + + Sbjct: 61 DPSAGEDKSKLIKIINPVIVEADGE-VIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A+ LLA QHE+DHLNG+LFID LS KR+ I K + K Sbjct: 120 VEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKK 162 >gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385] gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385] Length = 190 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++DNMLE MY+ +GIGLAA Q+ + R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 82 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188 >gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 170 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L +V P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ Sbjct: 1 MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGL A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165 >gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114] gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114] Length = 171 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 109/157 (69%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDPILR+ S + K+++DI L+DNMLE MY GIGLAA Q+G+L +++V Sbjct: 1 MSVLEILKEPDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL K P+ NPKII SD+ S +EGCLSIP Y A+V R ++Y+D + + Sbjct: 61 IDLAKEDEPKKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 Q I A+ LL+TC+QHE+DH +G+LFID+LS+LK+DM Sbjct: 121 QQEIEAEDLLSTCIQHEVDHCDGVLFIDYLSKLKKDM 157 >gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1] gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1] Length = 259 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP+ L+ + P+ + + + L+ +M+ M+ G+GLAA Q+GV ++VV Sbjct: 72 MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131 Query: 61 I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 I D +D NP + + + V +EGCLS+ DY + Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 VKR A + V +D + Q I A+G A LQHE+DHL G LFID LS LKR + KK+ Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251 Query: 164 KLV 166 K+ Sbjct: 252 KIS 254 >gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK] gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK] Length = 169 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+E I +I N++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + IT +EGCLS+P RA V R+A ++V+ +D + Sbjct: 61 IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVPRAAEVSVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + D Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167 >gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + +E L+D+M E MY GIGLAA Q+ R Sbjct: 1 MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID + PMVFINP+I+ + CLS+P ADV R+ I VR++D Sbjct: 61 FMVIDTSEDKSA--PMVFINPEIVQSQGGRVYQEG-CLSVPGIYADVTRADTIVVRFLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K + Sbjct: 118 EGRQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAKARR 167 >gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N+ + ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I +EGCLS+P A V R+ F+T++ +D + Sbjct: 61 MDLQDEIDRPK---VFINLEIIAKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GL A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73] gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M ++ FPD LR + P++ + L+D+M + MY+ GIGLAA Q+ V R Sbjct: 1 MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VF+NP+I+ + + CLS+P ADV RS ITVRY+D Sbjct: 61 FMVIDVSEEKNA--PHVFVNPQIVQREGEQVHQEG-CLSVPGIYADVTRSESITVRYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q Q + DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K + Sbjct: 118 QGQSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167 >gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1] gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens] Length = 170 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ K++ I L+ +M MY G+GLAA Q+ V R+VV Sbjct: 1 MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P INP+++ S++ + +EGCLS+P V+RS I V+ +D N Sbjct: 61 VDVSEGRDE--PFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +II A+G A C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 ERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168 >gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 166 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P++++N+ + LID+M E MY+ GIGLAA Q+ +L++ Sbjct: 1 MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + K+ + I D VY+EGCLS+P V R+ I V + + + Sbjct: 61 V---DTSETKDQLQVFINPKILERDGEQVYEEGCLSVPGVYESVTRAEKILVEALGKDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLL+ C+QHE+DHL G +F+++LS LKR+ I KM K + + Sbjct: 118 RFTLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQQRGK 166 >gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37] gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37] Length = 175 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++I PDP L++V + ++ ++ L D+MLE MY GIGLAA QIGVL RL+V+ Sbjct: 1 MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D+ P+V NP++I SD+ +VY+EGCLSIP+ A+V+R + V ++D + Sbjct: 61 DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGL ATC+QHE+DHL+G LFID+L L+R MIT+KM KL + R Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170 >gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 169 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 109/167 (65%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P++ +++ I L+ +ML MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+I+ S + V EGCLS+P V+R+A + VR +D + Sbjct: 61 IDVSEERNE--PLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I K+ K + Sbjct: 119 SRTIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQR 165 >gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 199 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++PI + N+ + ID+M E MY GIGLA+ Q+ ++L+V Sbjct: 30 MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I +EGCLS+P A V R+ F+T++ +D + Sbjct: 90 MDLQDDVERPK---VFINLEIVAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGN 146 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHELDHL+G LF+D+LS LKR I +K+ K +L Sbjct: 147 EFSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194 >gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134] Length = 168 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PDP L V++P+++++ I L+ +M E MY GIGLAA Q+ V ++VV Sbjct: 1 MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R VFINP+I+ SD+ V++EGCLS+P+ V+R + VR ++ + Sbjct: 61 IDVSE--TRDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G +F+++LS LK++ I K+ K + R Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167 >gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)] Length = 194 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305] gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305] Length = 201 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 35 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 95 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 152 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 153 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 199 >gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9] gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9] Length = 169 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L+++++ ++ ++ I ++++M E MY+ +G+GLAA Q+ + R+VV Sbjct: 1 MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +V INP+II S++ +++EGCLS+P +V+R + + V+ +D N Sbjct: 61 IDVSEERNDL--LVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHELDHL G +F++ LS LK++ I K+ K + Sbjct: 119 AFEFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKE 166 >gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594] gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594] Length = 194 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 116/192 (60%), Gaps = 25/192 (13%) Query: 1 MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ PDP L+ VS P+ ++ N D+ L+D+M E MY+ GIGLAA+Q+GV R+ Sbjct: 1 MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60 Query: 59 VVID-----------------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95 +VID + + + +P +FINP+II +++ S YQEGCL Sbjct: 61 LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 S+P+ ADV R TV+Y D + DGLLATCLQHE+DHL GILFIDHLSRLK+ Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180 Query: 156 DMITKKMSKLVQ 167 M KK+ K+ Q Sbjct: 181 QMALKKLKKMRQ 192 >gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505] Length = 168 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V++ + +++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+II +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167 >gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937] gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937] Length = 169 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ ++VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVSVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLARQ 165 >gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062] gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062] Length = 175 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+ LR PIE IN +I L D+ML+ MY GIGLAA QIGV+ R+ V Sbjct: 1 MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60 Query: 61 ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +D +D + K PMVFINP+I S++ + YQEGCLSIP DV+R A + V + Sbjct: 61 LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K + Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174 >gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000] gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15] gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000] Length = 173 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + L+++S P+E + ++ L+D+MLE MY GIGLAAVQ+G Sbjct: 1 MAIRRILTVDNAADLATLKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R++V+DL K P F+NP+I+ S+D Y+EGCLS+P+Y +V+R + +T+RYM+ Sbjct: 61 RVIVMDLAREGEDKAPRYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + A+GL A C+QHE+DHL G+LFIDHLSRL+RD K+ K + Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171 >gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 168 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V Sbjct: 1 MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q Sbjct: 61 MDTSEE--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHL G +F+D+LS LKR+ I KM K + Sbjct: 119 PFEMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166 >gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394] gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394] Length = 167 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ P+ L V++P+ +++ I L+ +M E MY+ GIGLAA Q+ V R+VV Sbjct: 1 MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + ++ + IT D + ++EGCLS+P V R+ +TV Y+D + Sbjct: 61 IDLSEEHNQLL---ALINPTITKKDGETTFEEGCLSVPGIYDTVSRAETVTVEYLDTEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLA C+QHELDHL G LF+++LS LK+ I K+ K + Sbjct: 118 PQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKKRQRE 165 >gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS] gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS] Length = 172 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 74/168 (44%), Positives = 111/168 (66%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ ++ +PD L V++P++ +++ I L+ +MLE MY +GIGLAA QI V RLVV Sbjct: 1 MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ P+V INP+I SD+ + +EGCLS+P V RS + V+ +D N + Sbjct: 61 IDVSEERNK--PIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I ADGLLA C+QHELDHL G +F+++LS LKR+ I K+ K + Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166 >gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25] gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B] gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25] gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 203 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 32 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 92 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 148 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 149 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 198 >gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9] gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9] Length = 169 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++IFPD LR +++P+E I DI N++D+MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + IT +EGCLS+P RA V R+A ++V+ +D + Sbjct: 61 IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVSRAAEVSVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I +K+ K+ + + Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFNE 167 >gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320] gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320] gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906] Length = 171 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +K + + + + +EGCLSIP+ RA V R+ + VR +D N Q Sbjct: 61 IDISETRDQKL---VLINPELLDQEGDTGIEEGCLSIPEQRAFVPRAERVKVRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + R Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166 >gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10] gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua] gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516] gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F] gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola] gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1] gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92] gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A] gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516] gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27] gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003] gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10] gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str. 91001] gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953] gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516] gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua] gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92] gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F] gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125] gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758] gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola] gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275] gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII] gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+] gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516] gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India 195] gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A] gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004] gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038] gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27] gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003] gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 170 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDISENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DGLLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116] gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116] Length = 172 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 194 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ Sbjct: 1 MAILNIRIIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D EGCLSIP V+R V +D N Sbjct: 61 YRI-----DGVEGHIINPVLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +GLLA C QHE DHL+GIL+ D L R + + Sbjct: 116 PVTVEGEGLLARCFQHENDHLDGILYTDRLEGEDRKSALRSIRN 159 >gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33] gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9] gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9] gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33] gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236] Length = 194 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A] Length = 181 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 9/177 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PDP LR ++P+ + + ++ NM E MY GIGLAA Q+ + RL+V Sbjct: 1 MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60 Query: 61 IDLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +D+ + +V +NP+I+ S++ Y+EGCLS+P+ A V R A IT Sbjct: 61 MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 VRY D Q A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K ++ Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLKN 177 >gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1] gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1] Length = 169 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I ++D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + IT +EGCLS+P RA V R+A ++V+ ++ + + Sbjct: 61 IDISDTRDQPM---VLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVKALNRDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 AD LLA C+QHELDHL G LF+D+LS LKR I K+ K+ + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKIKR 164 >gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047] gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047] gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116] Length = 169 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165 >gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 170 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISESRNE--PMVLINPEILEKHGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3] gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3] Length = 193 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ V R+VV Sbjct: 22 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 82 IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 139 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 188 >gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6] Length = 170 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236] Length = 170 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+L +RP+ + + + L+D+M E M + G+GLAA QIGV R+ V Sbjct: 1 MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D + V +I D +EGCLS+P + R+ + V Sbjct: 61 YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + Q G LA C QHE+DHL+G L+++ L+ +KKM K Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTGRHL-RASKKMLK 169 >gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100] Length = 176 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PD ILR S+ +E ++ ++ L ++MLE MY+ GIGLAAVQIGVL RL+V Sbjct: 1 MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q KNP+V INP+I+T D V++EGCLSIP A+V+R A + VRY+D Sbjct: 61 MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q L AT +QHE+DHL G LFIDHLSRLKR ++ +K KL + R Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170 >gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales bacterium TW-7] Length = 168 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I D ++ +EGCLS+P+ A V R+ +TV ++ N + Sbjct: 61 IDVSEERDEPL---VLINPQIIKKDGSTISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164 >gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655] gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1] gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655] gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA] gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1] Length = 169 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp. SM9913] Length = 168 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +++ + ++ + ++ +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+II +EGCLS+P A V R+ +TV ++ + Sbjct: 61 IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPHSYAKVDRAETVTVAALNEEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164 >gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586] gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586] Length = 169 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARQ 165 >gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 194 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+MLE MY+ +GIGLAA Q+ + R+VV Sbjct: 26 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 86 IDISE--TRDLPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192 >gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ] gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ] Length = 177 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P PIL S P+ + +I L D+M E MY+ G+GLAA Q+G RLVVI Sbjct: 1 MLLEILKYPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R+ + +NP I + + CLS+ DYRA+VKR+A +TV D + Sbjct: 61 DLSGPDKREERINLVNPVITKAEGEQEDDEG-CLSVRDYRANVKRAATVTVCATDLDGNP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + + Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167 >gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII] gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021] gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG] gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP] gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21] gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH] gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII] gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21] gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE] gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG] gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1] gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810] gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866] Length = 169 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198] Length = 174 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK++++I ++D+M E MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + + ++ + +EGCLSIP+ RA + R+ + VR +D N Q Sbjct: 61 I---DVSETRDERLVLINPELLDANGDTGIEEGCLSIPEQRAFIPRAEHVKVRALDYNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165 >gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325] Length = 170 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++PD L+ V++P+E++N I ++D+M E MY +GIGLAA Q+ + R++ Sbjct: 1 MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D K + I S + +EGCLS+P +R V R +TV+ +D N + Sbjct: 61 I---DVEGTKENQYVLINPEIIESCGETGIEEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL + Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKLQKQ 165 >gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004] gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004] Length = 170 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ ++ + +EGCLS+P+ RA V R + ++ +D + Q Sbjct: 61 IDVSENRDQRLVLINPELMNE---VGATGIEEGCLSVPEQRAFVPRFEQVKIKALDYHGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LKR I +K+ K+ +LR Sbjct: 118 QFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166 >gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4] gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4] Length = 172 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E++ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDVSE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1] gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1] Length = 167 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + VFINP+I+ SD +Y+EGCLS+P +V+R + VR +D Q Sbjct: 61 IDTSEDKNELR--VFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK++ I KM KL + Sbjct: 119 QFELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKLER 165 >gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20] gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW] gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20] gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW] Length = 169 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ K+N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32] gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32] Length = 171 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K ++ FPDP L++ +P+ IN + L+ +M E MY G+GLAA QIGV R+VVI Sbjct: 1 MIKKILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +V INP +I +D + +EGCLSIP Y A+V+R + V+ ++ + Sbjct: 61 DVTGKDEQPQLLVAINP-VIVHADGEAYEEEGCLSIPKYAANVRRHERVVVKALNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + Sbjct: 120 VTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162 >gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 182 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + + ++ NL+ ++ + M G G+AA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A +NP ++ EGCLSIP D +R + R + + + Sbjct: 61 YHCDGFAG-----HLVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I LLA C+QHE DHL+G+LF+D L R +++ Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREIR 158 >gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1] Length = 182 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M++ G GLAA QIGV R+ V Sbjct: 1 MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + A INP ++ V EGCLSIP D +R + R D + + Sbjct: 61 YECDGFAG-----HLINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q++ LLA C+QHE DHL+G+LF+D L R +++ + Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIRE 159 >gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101] gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101] Length = 174 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ +++ PDP L+++ P+ + ++ L D+ML MY GIGLAA QIGVL RL+V+ Sbjct: 3 MKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIVM 62 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ + P++ NP++I SD S Y+EGCLSIPD ADV R A + VR++D + Sbjct: 63 DCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDGN 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 L ATC+QHE+DHL+G LFID+L L+R MIT+KM+KL + Sbjct: 123 EHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKLKRE 170 >gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH] gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH] Length = 216 Score = 141 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 50 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 110 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 168 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 214 >gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909] Length = 170 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + VR +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 167 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V+RP+ ++ I LID+M E MY +GIGLAA Q+ V R+VV Sbjct: 1 MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + V I +VY+EGCLS+P V RS ++ VR ++ N + Sbjct: 61 IDVSEEKSALTAFV---NPEIVERRGDTVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I DGLLA C+QHE+DHL+G +F+D+LS+LK+ I KM K + Sbjct: 118 PFEIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164 >gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 167 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ N + Sbjct: 61 IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668] gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a] gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576] gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576] gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b] Length = 179 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200] Length = 167 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI++ I LI +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + +IT + + Y+EGCLS+P V R+ +TV ++ N + Sbjct: 61 MDLSEERNEPR---VFINPVITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165 >gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247] gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20] gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20] Length = 179 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 171 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP LR +S+P+ + + LID+M E MY G+GLAA QIGV RL V Sbjct: 1 MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I I S+ S + EGCLS+P V R+ +TV+ +D + + Sbjct: 61 IDILGDKKNQI---VIINPEIIASEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I A+GLLA CLQHE+DH+NG LFID LS LK+ M KK+ K + Sbjct: 118 PFEIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKFKRQ 165 >gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264] gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264] Length = 179 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 13 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 73 IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177 >gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641] gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703] Length = 170 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 167 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155] gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185] gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195] gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223] gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155] gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185] gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195] gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223] gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678] Length = 170 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans] Length = 176 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+ ++ I L+ +M E MY G+GLAA Q+ V +++V Sbjct: 1 MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R +INP++I S + +Y EGCLS+P V+R A + VR D + + Sbjct: 61 IDTSE--TRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 QFELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERE 166 >gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 228 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ Sbjct: 40 AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 99 Query: 62 DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ INP + T D +EGCLS P Y +KR+ ++TV +D Sbjct: 100 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 159 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 160 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206 >gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568] gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568] Length = 169 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+A + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAAAVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567] gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP++ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHL+G L+++ L++ K KK+ K Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168 >gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1] Length = 180 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 12/179 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++I PD L +VSRP+E ++ ++ LI +M + MY G+GLAA Q+G L R+ Sbjct: 1 MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60 Query: 60 VIDLQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V D V+INP+ + SD+ ++EGCLS+P+ DV R A Sbjct: 61 VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +R+ D + DG A LQHE DHL+G LFID+LS LKR MITKKM KL + Sbjct: 121 ALRLRWFDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179 >gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 170 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P+ + N+ + IDNM E MY GIGLAA Q+ +L++ Sbjct: 1 MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P AD++R+ +T++ +D + Sbjct: 61 MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGIYADIERAEHVTIKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 171 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +++RP+ +++ I L+ +M E MY GIGLAA Q+ V R++V Sbjct: 1 MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+I+ S++ V EGCLS+P V+R A + V +D N Q Sbjct: 61 IDVSEERND--PLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ADGLL+ C+QHE+DHL G +F+++LS LKR+ I KM + + RD Sbjct: 119 RYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKM--IKRGRD 166 >gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213] gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 170 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V++PD L V P+E+++ + ID+M E MY +GIGLAA Q+GVL R++ Sbjct: 1 MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S + +EGCLSIP +RA V R + V+ ++ + Sbjct: 61 IDIEGDKTNQV---VLINPEILESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 II AD L A C+QHE+DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 118 EIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKLKKQ 165 >gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473] Length = 170 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + +++V Sbjct: 1 MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ I +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKIKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL +L Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165 >gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3] Length = 170 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 104/170 (61%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + I E L+DNM + MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ + CLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 DGQQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 165 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PD +L++ + I +IN D+ LIDNM+E MY+ +GIGLAA Q+GVL RL+V Sbjct: 1 MAILEIKKYPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ +V INP+ IT S+ + +EGCLS+P + +KR + V+ +D N + Sbjct: 61 VDTSPREQNQSLIVLINPE-ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I A GLLA LQHE+DHL+GIL ID +S LKR++ KK Sbjct: 120 EIEIEATGLLARALQHEIDHLDGILLIDKISPLKRELFRKKFK 162 >gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49] Length = 167 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEEKNELR--AFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165 >gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21] gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21] Length = 188 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 19/186 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ PDP L+ VS P+ + + ++ L+ +M E MY GIGLAA+Q+GV R++V Sbjct: 1 MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60 Query: 61 IDLQDH-------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 IDLQ +K P VF+NP+I+ ++D + YQEGCLS+PD Sbjct: 61 IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ADV R A VRY D + +GL+ATCLQHE+DHL GILFIDHLSRLKR+M KK Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180 Query: 162 MSKLVQ 167 + KL + Sbjct: 181 LKKLRE 186 >gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 202 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+EK+ +I ++D+M+E MY +GIGLAA Q+ + R+VV Sbjct: 33 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 93 IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 149 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 150 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 199 >gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970] Length = 170 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + D LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 167 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+++ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSEEKNELR--VFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 TFEIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 175 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P+ +NP++I +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas haloplanktis TAC125] Length = 167 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++ + ++ + +I +MLE MY +GIGLAA Q+ + R+VV Sbjct: 1 MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P+V INP+II +EGCLS+P+ A V R+ +TV ++ + Sbjct: 61 IDVSEERNE--PLVLINPQIIKKDGTTVS-EEGCLSVPNSYAKVDRAETVTVAALNEQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ AD LLA C+QHELDHL G LFID+LS LKR I KK+ K + + Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167 >gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638] Length = 170 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 198 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V PI ++ LI++M + MY + G+GLAA Q+G+ RL V+ Sbjct: 1 MILPIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVV 60 Query: 62 DLQ------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KII+ ++ EGCLSIP DV R Sbjct: 61 DTIGFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D GL+A +QHE DH G LF D+LS K+ ++ K++ + + Sbjct: 121 IEIEYQDEQFNIHRETFSGLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNISNGK 180 >gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616] Length = 181 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 75 IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179 >gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 173 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V+ P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+I+ + +EGCLS+P RA V R+A +TV+ +D + + Sbjct: 61 IDVSE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKIKRFNE 167 >gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15] gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15] Length = 167 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+PIL++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R +V INP + ++ S +EGCLS+P Y A+V R A + V+ ++ + + Sbjct: 61 DVSQREERPELIVCINPVFV-HTEGESYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA QHE+DHL G+LF+DHLS LKR+M KK ++V+ Sbjct: 120 VTYRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVEE 166 >gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315] Length = 167 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEEKNELR--AFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 248 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+VI +P+L R + P+ + N ++ L+ +M E M +++G+GLAA QIGV R+ Sbjct: 60 AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 119 Query: 62 DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ INP + T D +EGCLS P Y +KR+ ++TV +D Sbjct: 120 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 179 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A G A C+QHE DHL+G L+++ L++ T KM K+V+ Sbjct: 180 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226 >gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++ P++++N +I ++D+M E MY+ +GIGLAA Q+ V +++V Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson] gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson] Length = 169 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ + + + +EGCLS+P+ RA V R+A + +R +D + + Sbjct: 61 IDISNNRDQRL---VLINPELLEKSGETGIEEGCLSLPEQRALVPRAANVKIRALDFDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 204 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA QIGV R+ Sbjct: 1 MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D + EGCLSIP V+R V +D + Sbjct: 61 YRI-----DGVEGHIINPVLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G+LA C QHE DHL+G+L+ D L R + + Sbjct: 116 PVSLEGEGMLARCFQHENDHLDGVLYTDRLEGEDRKAALRSIRN 159 >gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99] gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+ + I+NM E MY G+GLAA Q+ +L++ Sbjct: 1 MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P + AD++R+ +T++ +D + Sbjct: 61 MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGFYADIERAEHVTIKALDRDGI 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A CLQHELDHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFTLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01] gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222] gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01] gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + IT +EGCLS+P RA V R+A +TV+ +D Sbjct: 61 I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b] gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98] gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14] gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91] gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9] gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210] gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894] gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112] gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215] gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 167 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c] gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c] Length = 183 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + + + ++ L++++ E M+ G GLAA Q+GV R+ Sbjct: 1 MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P +EGCLS+P ++KR + + Sbjct: 61 FLDDDDEIDHLINPVLGPFSEEL----QDGEEGCLSLPGLSFELKRPERVLAIGQNMYGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G+++ CLQHE DHL+GILFID L R + K + + Sbjct: 117 PVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIRE 160 >gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 171 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R PMV INP+II + +EGCLS+P RA V R+A +TV+ +D + Sbjct: 61 IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167 >gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1] gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU] gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU] gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280] gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4] Length = 167 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183] gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175] gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183] gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175] Length = 170 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR + PI + N+++ ID+M E MY GIGLAA Q+ +L+V Sbjct: 1 MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D + Sbjct: 61 MDLQDEVER---HKVFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 175 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P+ +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5] gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 175 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P F I+ + EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031] gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165 >gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 167 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 181 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 15 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD VY+EGCLS+P +V+R + VR ++ + Sbjct: 75 IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179 >gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae R3021] gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591] gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + Sbjct: 118 PFELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLARQ 165 >gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 167 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PDP LR +P++K + ++ ++++M E MY+ G+GLAA Q+G+ RL +I Sbjct: 1 MLLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + I + +EGCLS+P A+V R+ + D N Sbjct: 61 DISKEKNDL---KVFINPTILKKEGEICDEEGCLSVPGEYANVTRAEVVEAVAQDINGNE 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 II ADGL+A +QHELDHLNG LF+D L KR+ + K + + Sbjct: 118 FIIKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKRRQ 162 >gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ +N + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSEN---RNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ +P+L R + P+ + + L+ +M E M + G+GLAA QIGV R+ Sbjct: 1 MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ +NP++ D +EGCLS P Y +KR+ ++TV Sbjct: 61 YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHL+G L+++ L++ K KK+ K Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168 >gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184] gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 167 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEEKNELR--AFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7] gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 175 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P+ +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + + + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70] Length = 170 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PD L+ +++P+ ++N +I ++DNM E MY +GIGLAA Q+ + R++ Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D K + I S + +EGCLS+P +R V R +T++ +D + + Sbjct: 61 I---DVEGTKENQYVLINPEIIDSCGETGIEEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHLNGI+F D+LS LKR + +K+ KL + Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQ 165 >gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 167 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + FINP+++ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDISEDKSELR--AFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKLER 165 >gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi] gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila ananassae] gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans] gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi] Length = 179 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM K K+ + + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKIKKQHE 178 >gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703] gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703] Length = 170 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVKIRALDKDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + DGLLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLDRQNN 167 >gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895] gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582] gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582] Length = 169 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSETRDQRL---VLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDYNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L+ Sbjct: 118 SFELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166 >gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47] gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859] Length = 175 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + + + + + L +M E MY G+GLAA Q+ RL+V Sbjct: 1 MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + V +NP+++ S++ ++EGCLS+P V R A + V+ D Sbjct: 61 IDITEEKNDLK--VLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + DGLLA C+QHE+DHL G +F+DHLS LK+ I K+ K+ Sbjct: 119 FFELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKMR 164 >gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826] Length = 184 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 13/183 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I PD LR+ + P+ + + + + DNM MY GIGLAA Q+ + R+VV Sbjct: 1 MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60 Query: 61 ID-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 +D D +V INP+II S++ + +QEGCLS+P ADV+R A Sbjct: 61 MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQ 167 I Y D A+GLL C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K L + Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSLLQK 180 Query: 168 LRD 170 R+ Sbjct: 181 ERE 183 >gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13] gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13] Length = 169 Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V+ P++++N+ I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+A + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAANVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ K+ +L Sbjct: 118 PFELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165 >gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264] Length = 167 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ SD VY+EGCLS+P +V+R + VR +D + Sbjct: 61 IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165 >gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2] gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10] gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2] gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10] Length = 164 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D Sbjct: 4 IRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ Sbjct: 61 --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae] gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae] gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R ++ + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALNRYGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 187 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR ++ + ++ L+++M + M + G GLAA Q+GV R+ Sbjct: 1 MAILGIRIIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP + D EGCLSIP A V+R + D Sbjct: 61 YQTGQERG-----HIVNPVLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I DGLLA C QHE DHL+GILF+D L ++ + + Sbjct: 116 PVEIEGDGLLARCFQHETDHLDGILFLDRLEPEEKKAAWRTLR 158 >gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 172 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++I PDP L++V + I+ I + D+MLE MY+ GIGLAA Q+GVL R++V+ Sbjct: 1 MKLKILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVL 60 Query: 62 DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + P+V +NP++I SD+ +VY EGCLSIPD ADV R + V ++D + Sbjct: 61 DCVKEDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q DGL ATC+QHE+DHL G LFID+L LKR MIT+KM KL + Sbjct: 121 LQKRDMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKLKRE 168 >gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48] gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48] Length = 178 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 9/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ P P+L++VS+P+E + ++ L+D+MLE MY GIGLAA+QIG R++ Sbjct: 1 MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60 Query: 60 VID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 V+D +D K P F+NP+II S++ S Y EGCLS+P+ +VKR A + Sbjct: 61 VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 ++Y++ + I DGL ATC+QHE+DHLNG+LFIDHLS+LKRD Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRDRA 167 >gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 169 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + N+D+ IDNM E MY GIGLAA Q+ ++L+V Sbjct: 1 MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A+V+R+ +T++ +D Sbjct: 61 MDLQDEVERPK---VFINLEIVASSGHFENEEGCLSVPGIFANVERAEHVTIKALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL CLQHELDHL G LF+D+LS LKR I +K+ K + Sbjct: 118 EFTLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165 >gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383] gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383] Length = 167 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+I+ SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEEKNELR--AFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f] gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f] Length = 183 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+D++ E M G+GLAA Q+GV R+ Sbjct: 1 MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP + FS++ +EGCLS+P D++R + + + Sbjct: 61 YLDDSDEVG----HLVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G+L+ CLQHE DHL+GILFID L + + K + + Sbjct: 117 PVTIEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160 >gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D] gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D] gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 171 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ + Sbjct: 61 IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AD LLA C+QHE+DHL G +F+++LS LK+ I K+ K + Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165 >gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1] gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1] Length = 181 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR++++PI K ++ ID+ML+ MY +G+GLAA Q+ +RLVV Sbjct: 11 MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + P+VFINP+ D+ + +QEGCLS+P + + R+A + V+ +D N + Sbjct: 71 MDFSEERNE--PIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGK 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + D L+A C+QHE+DHL+G L +D+L+ LKR+ I K+ K +L Sbjct: 129 PFTLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176 >gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 169 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ FPDP+L +V+ P+ + + L+D+M MY+ +GIGLAA QI + R+ +I Sbjct: 1 MLYEIIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL + +V INP++I + +EGCLS+PD R V R+A++ VR D +H Sbjct: 61 DLSFQKRPEEKIVLINPEVIAV-EGKQHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKH 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA QHE+DHLNGILFI +SRLKRD++++++ K+++ + Sbjct: 120 FEVEGTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMKNGE 168 >gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5] Length = 167 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISEEKNELR--AFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 AFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147] gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 167 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + VFINP+I+ D VY+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDVSEDKNEL--RVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 SFEIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKLER 165 >gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 169 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 168 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+ + ++ ++ I L+D+MLE MY + G+GLAA Q+ V R+VV Sbjct: 1 MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II +EGCLS+P + V+R+ I V+ +D + Sbjct: 61 IDVSEEKDA--PLCLINPEIIEKDGVKES-EEGCLSVPGFFEKVERAEHIIVKALDREGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHELDHL+G LF+D++S LKR I KK+ K+ ++ Sbjct: 118 PFELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKIHKM 165 >gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 SFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B] gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B] Length = 175 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P L + + P+ +I +I L M E MY+ GIGLAA Q+G RLVVI Sbjct: 1 MSLEILKYPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R+ M +NP +IT +EGCLS+ DYR +V R+A +TV+ D + Sbjct: 61 DLSGPDKREGLMTLVNP-VITDPAGEEEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M K++ + + Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWARQ 166 >gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127] gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127] Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N I ++D+M + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R + VR +D + + Sbjct: 61 IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165 >gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+ ++ + L D M MY+ +GIGLAA Q+ V RLVV Sbjct: 1 MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + + EGCLS+P V+R+ + V +D N Q Sbjct: 61 IDVSE--GRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q+ A+G+LA C+QHE+DHL G +F+++LS LKR+ I K+ K + + Sbjct: 119 KQLHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKKDEE 168 >gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P++K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB] Length = 170 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PDPILR+ + +E I+ ++ LID+M E MY GIGLAA Q+G L+V Sbjct: 1 MAILDICTYPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQ +V INP+I+ + ++EGCLS+P+Y + VKR A + VR + + Sbjct: 61 VDLQRQDEEHGLIVLINPQIVATQGE-ITWEEGCLSVPEYFSAVKRHAEVVVRGYGRDGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A GLLA LQHE+DHL G LFID L+ + RD+ Sbjct: 120 EMEIQAGGLLAVALQHEIDHLEGRLFIDRLNPITRDIF 157 >gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec] gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec] Length = 183 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR V+ P+ + ++ L+D++ + M G+GLAA Q+GV R+ Sbjct: 1 MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P D +EGCLS+P D++R + + + Sbjct: 61 YLDDSDEVGHLINPVLGPFSEEMMDG----EEGCLSLPGLAFDLRRPERVLAVGQNSHGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G+L+ CLQHE DHL+GILFID L + + K + + Sbjct: 117 PVTVEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160 >gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 179 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + + Sbjct: 121 KYRDLNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178 >gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22] gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55] gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342] gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22] gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55] Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + D + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRE---ERLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 177 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++RP+ + + L+ +M E MY G+GLA+ Q+ V +L++ Sbjct: 1 MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D+ V INP+I S + +Y EGCLS+P V+R A I VR +D + + Sbjct: 61 VDISDNQSELR--VLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 119 EFDTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166 >gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5] gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5] Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 92/168 (54%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+P+ IL++ + ++ I+ ++ NLI +M + MY +G+GLAA QIGV ++VI Sbjct: 1 MVRDIVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + I + Y+EGCLS P +V+R + V ++ + + Sbjct: 61 DTSPKEDAPPLKLVLINPEIKEGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G A QHELDHL GI F+D L +R M +K KL++ R Sbjct: 121 VELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168 >gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 Length = 169 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ FPD LR V++P+E++ +I ++D+ LE Y+ +GIGLAA Q+ + R+VVI Sbjct: 2 SVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVI 61 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + R P V INP+II + +EGCLS+P RA V R+A +TV+ +D N Q Sbjct: 62 DISE--TRDQPXVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQE 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ + + Sbjct: 119 YQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167 >gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8] gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8] gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima] Length = 164 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D Sbjct: 4 IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I V+Y + ++ Sbjct: 61 --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1] gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1] Length = 168 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP LR V++ +E++ +I ID+ML+ MY GIGLAA Q+ + R+VV Sbjct: 1 MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + PMVFINP+ + D+ + +QEGCLS+P Y + R+A + V+ +D + + Sbjct: 61 MDHSEERNE--PMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + D L+A C+QHE+DHL+G LF+D++S LKR+ I Sbjct: 119 PFEMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156 >gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 170 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P++ +PDP L R++RP+ ++ I L D+ML MY GIGLAA Q+ V RL+ Sbjct: 1 MAILLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLL 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ D + P+V INP+II S + + EGCLS+P DV+R + VR +D Sbjct: 61 VVDVSDEHDQ--PLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRG 118 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q Q+I ADGLLA CLQHE+DHL G +F+ +LS LKR+ I +M K + Sbjct: 119 QPQVIEADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167 >gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147] Length = 167 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ P+ L V++P+ +++ I L+ +M E MY++ GIGLAA Q+ V R+VV Sbjct: 1 MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + ++ + +IT D + Y+EGCLS+P +V R+ ITV ++D Sbjct: 61 IDLSEEKNQLL---ALINPVITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLA C+QHELDHLNG LF+++LS LK++ I KM K + Sbjct: 118 KQTLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKKRQRE 165 >gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 176 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 2 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 61 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID+QDH P+ +NP+II +++ EGC+S+P+ R +V R I +RY+ Sbjct: 62 IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 121 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 122 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174 >gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2] gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2] Length = 164 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P +INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 L---ELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRLKR+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164 >gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14] gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14] Length = 170 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + IE LIDNM MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ + CLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 NGQEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1] Length = 169 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 165 >gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii TTO1] gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 170 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+E ++++I +ID+M E MY+ +GIGLAA Q+ + R+VV Sbjct: 1 MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + +N + + + + +EGCLSIP+ RA V R+ + ++ +D N + Sbjct: 61 I---DVSETRNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIKALDYNGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LF+D+LS LKR I +K+ KL + + Sbjct: 118 PFELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLDKQK 166 >gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74] gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74] Length = 190 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 11/179 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+ ++ IE + D+ L NM E MY+ GIGLAA QIG R+ V+ Sbjct: 1 MILPIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVV 60 Query: 62 D-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D D + VFINP+II + D ++EGCLSIP R +V R I Sbjct: 61 DGEPLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEII 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +RY D + DG+ A +QHE DHL+G LF D+L L+R +I KK+S + + + Sbjct: 121 VIRYFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179 >gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6] Length = 172 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P+P+L + S PI ++ +I L + M E MY +DGIG+AA Q+G L RLV+I Sbjct: 1 MSLKIVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ R+ MV +NP D + +EGCLS+PDYR+ V+R+A + V D + Sbjct: 61 DVTGPEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 AD +LA C+QHE+DHL+G LFID +SRLKR M K+ K + Sbjct: 121 PVSFDADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKKGTRQ 168 >gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440] gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440] Length = 186 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++++ M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLS+P D KR + + + Sbjct: 61 FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I GL+A C+QHE DHL+G+LFID L R K++ + Sbjct: 116 PMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRR 159 >gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32] Length = 170 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2] Length = 200 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 28/198 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V FP P L+ ++P+ + N ++ L +M+E M++ G+GLAA QIGV R+VV Sbjct: 1 MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60 Query: 61 I----------------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 I P + + I ++ V +E Sbjct: 61 IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVEAEGQQVDEE 120 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 GCLS+ +Y +VKR A I V+ D + Q A+ A +QHELDHL+G LFID +S Sbjct: 121 GCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRISP 180 Query: 153 LKRDMITKKMSKLVQLRD 170 LKR + KK+ K++Q + Sbjct: 181 LKRTLYRKKLKKIMQAEE 198 >gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 181 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+LR ++P+ + ++ L+ ++ + M G GLAA Q+GV R+ Sbjct: 1 MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + ++ +++ EGCLS+P R D +R+ + + ++ + + Sbjct: 61 YNVDGVVGH------LINPDLSLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + LLA C+QHE DHL+GI+FID L R R K + + Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIRE 158 >gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54] gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54] Length = 169 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 92/164 (56%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +PDP+LR+ + I + ++ L ++M E MY GIGLAA QIG +LVV Sbjct: 1 MAILKICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + K + + I ++ V +EGCLS+P+ A VKR I V Y D N + Sbjct: 61 VSTARREDSKQEYMVMANPEIVEKEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A LQHE+DHLNGILF+DHLS LKR++ KK+ K Sbjct: 121 PCSMTVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKK 164 >gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1] gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1] Length = 170 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEIERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136] Length = 192 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 14/179 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ DP+LR +PI ++ +I L +M+E M++ G+GLAA Q+G+ +L VI Sbjct: 1 MILPIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVI 60 Query: 62 DLQDHAHRKNPMVFIN--------------PKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 ++ + + + ++ +EGCLSIPD R++V+RS Sbjct: 61 EVPPDDESVTYVRLNGEDTPLAEAMPLIFLNPKLDHGKEKAMGEEGCLSIPDLRSEVRRS 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A + V Y + + + I ADGLLA LQHE+DHLNGILFID LS + + +K+ +L+ Sbjct: 121 AGVKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179 >gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9] gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9] Length = 167 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+RP++ ++ + LID+M E MY+ GIGLAA QI RLVV Sbjct: 1 MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + + +IT +VY+EGCLS+P V R+ +TV +D N Q Sbjct: 61 IDLSEEHDGLL---VLINPVITRKAGETVYEEGCLSVPGIYDKVTRAETVTVEALDRNGQ 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL+G +F++HLS++K+ I +K+ K + Sbjct: 118 PFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165 >gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a] gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a] Length = 170 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P++ FPDP LR + IE LIDNM MY GIGLAA Q+ V R Sbjct: 1 MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VID+ + + P VFINP+I+ + CLS+P ADV R+ ITV+Y+D Sbjct: 61 FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N Q Q + A +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K + Sbjct: 118 NGQEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167 >gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 167 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + FINP+II SD+ +Y+EGCLS+P +V+R + VR ++ + Sbjct: 61 IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL + Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165 >gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum GMI1000] Length = 169 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S+ V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSESRDEL--RVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167 >gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602] gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602] Length = 170 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIPD RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPDQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +KM K+ +L Sbjct: 118 TFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165 >gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 170 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 PFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01] Length = 172 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P PIL + + IE I+ D++ L+++M E +Y G+GLAAVQ+GV ++V Sbjct: 1 MALLDIVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLV 60 Query: 61 IDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D+ + + ++ V INPKI+ + EGCLS+P++RADV R A +TV +D Sbjct: 61 YDVAEDENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I A+GLLA LQHE+DHL G LFID +S LKR M ++++K ++ Sbjct: 121 GKPVKIDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALK 169 >gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617] gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617] Length = 169 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12] gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12] Length = 168 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V++P+ ++ + L+ M E MY+++G+GLAA Q+ V R++V Sbjct: 1 MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ INP+I+ S + ++EGCLS+P V R A + VR +D Q Sbjct: 61 MDTSE--QRNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGL A C+QHE+DHL G +F+D+LS LKR+ I KM K + Sbjct: 119 PFEMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166 >gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 169 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 170 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 TFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2] gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220] gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2] gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220] Length = 169 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + D + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---EQLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 172 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +PDP L+ V P+ ++ +I L +MLE MY G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPK-IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP V INP ++ + S + +YRADVKR + + + D + Sbjct: 61 DPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A +QHE DHL+GILFID +SRL+R + K+ K ++ + Sbjct: 121 AIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLKRK 169 >gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638] gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638] gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli] gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615] gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905] Length = 169 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 110/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+D Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167 >gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946] gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430] gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158] Length = 169 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 I---DVSESRDERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SFELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKLHRQ 165 >gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +T S++ EGCLS+PD D +R+ + + D + + Sbjct: 61 WYVDGQVGHLV------NPDLTLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA +QHE DHL+GILFID L R K++ + Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158 >gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740] gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella succinogenes] Length = 170 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P++ +P P+L++ S P+ + ++ +D M M + +G+GLAAVQ+G R ++++ Sbjct: 1 MLPIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVN 60 Query: 63 LQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + + F + + EGCLS+P++ DV R + + Y D + Sbjct: 61 IPDEEGNQERENLLEIINPEFLSKEGEIQFNEGCLSVPEFYEDVTRFDRVRLTYQDRYGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+G LA LQHE+DHLNGILFID LS +KR K++ K + Sbjct: 121 RHEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKKRQR 167 >gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 190 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 1 MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + D +EGCLS P + +KR+ + V Sbjct: 61 YKYANDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D Q A G A +QHE DHL+G L+++ L K+ K Sbjct: 121 DGYGQPVRFEATGWFARVMQHEYDHLDGKLYVNRLMDRYARKAMKQAKK 169 >gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075] gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075] Length = 170 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L I++++ ++ L +M++ MY G+GLAA Q+G R+VV Sbjct: 1 MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R PMV INP+++ + CLS+PDYRADV R++ + V D Sbjct: 61 VDTAEDDKRGTPMVLINPRVVAKRGQLVWDEA-CLSVPDYRADVVRASEVVVEAGDLEGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+GL A CLQHE+DHL+G+LF+DH+S LKR M Sbjct: 120 DLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAMY 157 >gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168] gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168] Length = 169 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSENRD---ERLVLINPELLEKEGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165 >gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1] gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1] Length = 169 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + D + +EGCLS+P+ RA V R+ + VR +D + + Sbjct: 61 IDVSEDREQQL---VLINPELIEKDGETGIEEGCLSVPEQRALVPRAETVKVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +++ Sbjct: 118 PFELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166 >gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044] gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3] gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3] Length = 169 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + D + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15] Length = 169 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ SD V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDISESRDELR--VFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + DGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford] gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford] Length = 175 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH P+ +NP++I S++ EGC+S+P R +V R I +RY+ Sbjct: 61 IDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114] gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11] gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114] gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11] Length = 170 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P+E + +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + +IT +EGCLS+P + V RSA ++V +D + Sbjct: 61 I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGLVPRSAEVSVSALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 AD LLA C+QHELDHL+G LF+D+LS LKR Sbjct: 118 EFSFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154 >gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392] Length = 175 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+PD L+ V P+ ++N DI ++D+M + MY +GIGLAA Q+ +L R++ Sbjct: 7 MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 67 IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K + Sbjct: 124 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 171 >gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR + P++ + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP + + +EGCLS P R+ + ++ + + Sbjct: 61 YYVDE-----QLGHLINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + L+A C QHE DHL+G+LFID + +R + K++ + Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIRE 159 >gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028] Length = 170 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V +P+P+L + + P+ +I +I L MLE+MY+ GIGLAA Q+ RL+ + Sbjct: 1 MPRTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R++P VF+NP + + +EGCLS+ YR VKR+ + + D + + Sbjct: 61 DLSGPDKREDPHVFVNPVLSNLEGEVES-EEGCLSVVGYRTTVKRAERLHLSATDLDGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD L+A CLQHE+DHL+G+LFID +S+LKR + +K+ K ++ ++ Sbjct: 120 VEMDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168 >gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1] gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1] Length = 164 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D Sbjct: 4 IRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EGCLS P+ +++RS I VRY + ++ Sbjct: 61 --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEV 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160 >gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2] gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 175 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH P+ +NP+II S++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIKDHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200] Length = 170 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++PI + ++++ IDNM E MY GIGLAA Q+ +L+V Sbjct: 1 MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+TV+ +D N Sbjct: 61 MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ A+ L A C+QHE+DHL G LF+D+LS LKR I +K+ K +L Sbjct: 118 EFIVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165 >gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J] gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J] Length = 171 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ SD+ V+ EGCLS+PD V R A + VR ++ Sbjct: 61 IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + AD LLA C+QHE+DHL G +F+++LS LK+ I K+ K + Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165 >gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 177 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 1/166 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ PDP+LR + + ++ I NL+D+M MY GIGLAA QI + +++ Sbjct: 8 ILDIIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINIS-ERLIVM 66 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 INP+II S+D S+ +EGCLSIPD A+V R A +TVRY D + Q Sbjct: 67 DCGKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQ 126 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K ++ Sbjct: 127 MLTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMKEMRQ 172 >gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 169 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D Sbjct: 61 IDVSENRDGRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96] gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163] gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617] Length = 169 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SVELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815] gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815] Length = 167 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+EK++ I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D FINP+I+ SD+ +++EGCLS+P +V+R+ + VR M+ + Sbjct: 61 IDVSDTHEELR--AFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLA 164 >gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32] gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32] Length = 206 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P++++ +I +D+M+E MY +GIGLAA Q+ R+VV Sbjct: 37 MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + IT +EGCLS+P RA V R+A +TV+ +D Sbjct: 97 I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 153 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 AD LLA C+QHELDHL G LF+D+LS LKR I K++K+ + + Sbjct: 154 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203 >gi|300718672|ref|YP_003743475.1| Peptide deformylase [Erwinia billingiae Eb661] gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661] Length = 174 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N+DI ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D Sbjct: 61 IDVSENRE---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SYELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99] gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99] Length = 169 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSEDRD---ERLVLIDPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL + Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165 >gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 171 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR+++ P++K++ I + D+MLE MY +GIGLAA Q+ + R++V Sbjct: 1 MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P++ INP+++ + +EGCLSIP +A + R+ IT++ ++ + Sbjct: 61 IDVSED--RHQPLILINPELLEK-SGETGIEEGCLSIPGEKAFIPRAKEITIQALNREGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHL G LF+D+LS KR I KKM KL ++ + Sbjct: 118 SFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167 >gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968] gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968] gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 170 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V++P+ + + LI++M E MY+ G+GLAA QIG+ RL V Sbjct: 1 MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I I S+ ++EGCLS+P V R+ + V+ +D + Sbjct: 61 IDIAGDKKNQL---VIINPEIIASEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADGLLA CLQHE+DH+NG LFID LS LK+ M KK+ K + Sbjct: 118 PFEIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKFKRQ 165 >gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 212 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D +++ V NP + + + EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 173 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I PDP L++V+ P+ I+ D+ L D+MLE MY GIGLAA Q+ V+ R++V Sbjct: 1 MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D Q PMV INP+II S+ SVY EGCLSIP+ A+V R A + V ++ + Sbjct: 61 MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + Q DGL ATC+QHE+DHL+G LFID L LKR MIT+KM KL + Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKLKRE 169 >gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 171 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ FPDP L++ S+P+ IN+ ++ L+ +M E MY G+GLAA QIGV R+VVI Sbjct: 1 MIRKILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP II +D S +EGCLSIP Y A+V+R + V+ ++ + + Sbjct: 61 DVAGKDDPPQLIVAINPVII-HADGESYEEEGCLSIPKYAANVRRHERVVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ADGLLA QHE+DHL+GILFIDH+S LKR++ +K + Sbjct: 120 ITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162 >gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 183 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R + + ++ L+++M E MY+ +G+GLAA QIGV R+ V Sbjct: 1 MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NPK+ D EGCLS+P R+++ V Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + G A CLQHE DHL+G L++D L + KKM K + Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIG-RHARAAKKMLKANK 171 >gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043] Length = 169 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160] gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160] Length = 167 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + INP+I+ SD+ +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSETHDELL--ALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga Maritima Length = 176 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V+D Sbjct: 16 IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ + V +EG LS P+ +++RS I V+Y + ++ Sbjct: 73 --VGNGPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 130 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID +S KR ++ KK+ + + Sbjct: 131 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 172 >gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134] gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134] Length = 196 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L++ ++ I ++ L++NM E MY G+GLAA Q+G+ R+ ++ Sbjct: 1 MILPIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D FIN +I+ + + EGCLSIP DV R Sbjct: 61 DTTPFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T++Y D N + +GL+A +QHE DH++GILF D LS LK+ +I K++ + + + Sbjct: 121 VTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISKGK 180 >gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5] gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 176 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+ML+ MY DG GLAAVQ+GVL R++V Sbjct: 2 MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILV 61 Query: 61 IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH P+ +NP+II S++ EGC+S+P+ R +V R I +R + Sbjct: 62 IDIKDHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCL 121 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 122 DYHGKSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174 >gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217] Length = 196 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+ + I + ++ L+ NM E MY G+GLAA QIG RL V+ Sbjct: 1 MILPIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D R FINP+I+ + D + EGCLSIP DV R Sbjct: 61 DATPFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPI 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D + + DGLLA +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 IKIKYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISKGK 180 >gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 170 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++P++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996] gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996] Length = 193 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EK++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 27 MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 87 MDLTEDRSEP---RVFVNPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190 >gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 167 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD LR++S+P+ KIN+ I ++ +M + MY +GIGLAA Q+ + ++V Sbjct: 1 MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ ++ V INP+++ S + +++ CLSIP+ V R+ I VR +D N Sbjct: 61 IDVSENKEQRL--VLINPELLAKSGETGIHEG-CLSIPEQHGFVPRAKNIKVRALDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + L A C+QHE+DHL G LFID+LS LKR + KKM +L++ D Sbjct: 118 SFNLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIRNLD 167 >gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933] gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073] gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227] gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197] gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110] gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89] gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536] gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1] gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A] gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS] gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739] gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627] gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A] gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11] gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22] gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019] gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171] gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012] gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1] gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024] gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11] gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1] gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88] gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a] gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989] gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026] gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972] gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952] gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43] gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606] gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9] gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B] gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000] gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966] gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412] gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354] gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185] gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088] gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50] gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302] gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1] gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1] gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1] gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1] gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1] gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1] gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1] gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1] gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1] gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1] gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1] gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1] gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1] gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1] gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101] gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736] gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W] gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7] gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75] gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70] gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736] gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605] gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718] gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206] gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143] gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271] gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591] gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In Complex With Peptidomimetic Ligand Bb2827 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933] gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073] gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12] gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12] gi|471304|emb|CAA54826.1| deformylase [Escherichia coli] gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str. K-12 substr. MG1655] gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655] gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai] gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197] gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227] gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110] gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89] gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536] gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1] gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS] gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A] gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739] gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B] gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627] gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196] gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113] gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076] gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401] gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486] gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501] gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869] gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A] gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11] gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22] gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019] gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171] gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012] gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1] gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206] gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045] gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042] gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115] gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli] gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli] gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli] gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli] gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11] gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69] gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588] gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989] gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469] gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1] gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88] gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a] gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026] gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82] gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43] gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA] gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972] gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952] gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606] gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)] gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359] gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009] gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1] gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15] gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042] gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088] gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412] gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185] gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354] gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034] gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302] gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1] gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1] gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1] gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1] gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1] gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1] gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1] gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1] gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1] gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1] gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1] gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1] gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1] gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1] gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101] gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W] gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972] gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146] gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7] gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407] gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70] gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75] gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C] gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W] gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1] gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1] gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3] gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1] gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3] gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431] gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112] gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905] gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83] gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212] gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327] gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B] gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101] gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89] gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687] gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61] gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010] gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357] gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1] gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11] gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520] gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482] gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120] gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252] gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263] gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863] gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007] gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509] gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2] gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1] gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253] gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167] gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044] gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125] gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v] gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86] gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736] gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605] gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718] gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206] gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143] gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271] gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591] gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82] gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74] gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74] gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9] Length = 169 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 179 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K P+VI PD L + + I I L+++M E MY +G+GLAAVQ+GVL R+ + Sbjct: 1 MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I S + + +EGCLSIP+ ++KR ++TV Sbjct: 61 MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM KK K+ + + Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKVKRHYE 178 >gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 169 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY G+GLAA QI V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167 >gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase Length = 188 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKNGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC 23834] Length = 167 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + + + +I D ++Y+EGCLS+P V R+ I +D + Sbjct: 61 MDLSESRDQLQ---VLINPVIIERDGETIYEEGCLSVPGVYDKVTRAESIVAEALDAEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I+ADGL A C+QHE+DHL+G +F+ +LSRLK++ I KM KL + Sbjct: 118 PYTIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKLDK 164 >gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551] gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 188 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR +++P+ + IDNMLE MY GIGLAA Q+ +L+V Sbjct: 19 MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I S +EGCLS+P A V R+ F+T++ +D + + Sbjct: 79 MDLQDEVERPT---IFINPQIVASSGDLANEEGCLSVPGIYAKVDRAEFVTLKALDRHGK 135 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I+ AD L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 136 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183 >gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 167 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + FINP+I+ SD + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSETHDELL--AFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9] Length = 188 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP+L + + + + L+D M E MY GIGLAA QIG+ R+ VID+ Sbjct: 24 VLKWPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSF 83 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + K+ + INP II + V +EGCLS+PD R V R+ ++ V+ D + Sbjct: 84 KKNPKDRLALINPVIIEA-EGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVE 142 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D LLA LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ + + Sbjct: 143 GDELLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKMQKNGE 187 >gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7] gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKLKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 167 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--AHDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 179 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178 >gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894] gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894] Length = 171 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166 >gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666] gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666] Length = 173 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L +++P+ +++ + L +M + MY GIGLAA Q+ V RL+V Sbjct: 1 MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + R P+V INP+I+ S + V EGCLS+P V+RS + V+ +D + + Sbjct: 61 IDVSED--RDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q+ A+G+LA C+QHE+DHL G +F+++LS LKR+ I KM K + + Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKKDEE 168 >gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 216 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205 >gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum IPO1609] Length = 174 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 66 IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172 >gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863] Length = 217 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P +LR+ ++P+ KIN+ I L+D+M E MY+ G+GLAA Q+GV RL+V Sbjct: 1 MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D QD + + + I ++ + EGCLSIP DV R + V +D + Sbjct: 61 VDPQDGSGQL---YQLINPEIVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL+GIL+ D + L+ Sbjct: 118 KVWIDAEGYLARIFQHEIDHLDGILYTDKCTNLR 151 >gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94] gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPKQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238] gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio salmonicida LFI1238] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 3/157 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR V++P++ + +I ID+M+E MY +GIGLAA Q+ R+VV Sbjct: 1 MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ + + +IT +EGCLS+P + V RSA ++V +D + Sbjct: 61 I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGMVPRSAEVSVTALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 AD LLA C+QHELDHL G LF+D+LS LKR Sbjct: 118 EFSFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154 >gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein [Ralstonia solanacearum MolK2] Length = 174 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ ++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 6 MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 66 IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172 >gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++P+ +++ I L+ +M E MY GIGLAA Q+ V R++ Sbjct: 1 MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + VFINP+I+ S + V+ EGCLS+PD V+R + VR ++ + Sbjct: 61 IDVSESRDELR--VFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G +F+++LS LK++ I K+ K R Sbjct: 119 TFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167 >gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 167 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli] gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A] gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75] gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli] gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A] gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75] Length = 169 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1] Length = 170 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L V++P+++++ + L+D+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + P V INP+++ SD+ V EGCLS+P V R A +TVR + + Q Sbjct: 61 IDVSDDRNE--PRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A+ LL+ C+QHE+DHL G +F+++LS LKR+ I KM L + RD Sbjct: 119 AYQFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKM--LKKTRD 166 >gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis] gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis] Length = 175 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 104/173 (60%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+P+ + +D+M++ MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILV 60 Query: 61 IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P P+II S++ EGC+S+P+ R +V R I +RY+ Sbjct: 61 IDIKDHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173 >gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 179 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ +KR ++TV Sbjct: 61 MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K+ + + Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178 >gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans'] gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans'] Length = 171 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+V++P+ +N I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + EGCLSIPD R V R+ + V+ +D + Sbjct: 61 IDVSESRDQRL---VMINPELLEKSGETGIDEGCLSIPDQRGFVPRAEKVKVQALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD LLA C+QHE+DHL G LF+D+LS LKR I +KM KL ++ Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165 >gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046] gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39] gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1] gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280] gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299] gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301] gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T] gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046] gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401] gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5] gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39] gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368] gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128] gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri 2002017] gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1] gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14] gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G] gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180] gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280] gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299] Length = 169 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 169 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E+++ I L+ +M E MY+ G+GLAA Q+ V R+VV Sbjct: 3 MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R VFINP+I+ SD+ + +EGCLS+P V+R+ + VR ++ N + Sbjct: 63 IDVSD--TRDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +GLLA C+QHE+DHL G +F+++LS LK+ I M K + R Sbjct: 121 SFELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169 >gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58] gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18] gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442] gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491] gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14] gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58] gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18] gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491] gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442] gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14] gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153] gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275] gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis 8013] gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710] gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria meningitidis WUE 2594] gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568] gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304] gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190] gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399] gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579] gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902] gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385] gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945] gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013] gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136] gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76] gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149] gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355] gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196] gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33] Length = 167 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 167 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164 >gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 167 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FPDP LR+V+ ++KI+ I L +M E MY GIGLAA Q+ V R++V Sbjct: 1 MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + ++ ++ + I D V +EGCLS+P V+R+ + VRY D + Sbjct: 61 V---DASETRDQLLTLINPEILQQDGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + A GLLA CLQHE+DHL G +F++HLS+LK+ I K++K ++ Sbjct: 118 EQTVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQARI 165 >gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453] gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453] Length = 171 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L V++P+ ++N I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL + ++ + + IIT D + Y+EGCLS+P V R+ +TV ++D + Sbjct: 61 IDLSEERNQL---ITLINPIITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + ADGLLA C+QHELDHL G +F+++LS LK++ I KM K + Sbjct: 118 AQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKRERE 165 >gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 167 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V+ P+ +I I LI++M E MY+ GIGLAA Q+ V R++V Sbjct: 1 MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + +N ++ + IT S+ S Y+EGCLS+P V+R+ + VR ++ + Sbjct: 61 I---DTSEARNDLLVLINPEITASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ ADGLLA C+QHE+DHL G +F+++ SRLK+ K+ K + Sbjct: 118 SFVLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKKKQR 164 >gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256] gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256] Length = 193 Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 27 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 87 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190 >gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 212 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + EGCLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M + Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201 >gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1] gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1] gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509] Length = 169 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+GLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685] gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685] Length = 167 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAESVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1] gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1] gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1] gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1] Length = 169 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + + +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKICALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166 >gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640] gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06] Length = 167 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032] gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032] Length = 177 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N+DI ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 7 MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D N + Sbjct: 67 IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRNGK 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS +KR I +K+ KL +++ Sbjct: 124 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172 >gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 167 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+E++N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + FINP+I+ S++ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLA 164 >gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090] gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18] gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140] gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1] gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332] gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090] gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02] gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19] gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18] gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1] gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332] gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035] Length = 167 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567] gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567] Length = 190 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ Sbjct: 1 MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + EGCLS+P ++D R + VR +D + Sbjct: 61 FGGIDDREGYIINPVLETGTEPQEGG-----EGCLSVPGMKSDTPRMNWARVRGVDKMGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158 >gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7] Length = 196 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V++ I ++ +++NM E MY G+GLAA Q+G+ R+ ++ Sbjct: 1 MIYPIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLV 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D FIN I+ + + + EGCLSIP+ R DV R Sbjct: 61 DTSPFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+RY D N + GL+A +QHE DH+ GILF D +S LK+ +I K++ + + + Sbjct: 121 VTIRYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISKGK 180 >gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31] gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31] Length = 173 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + +L++VS+ + ++ + L+D+MLE MY GIGLAAVQ+G L Sbjct: 1 MAIRRILTVDNAADLAVLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELV 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++V+DL P F+NPKI S++ Y+EGCLS+P+ V+R A + + Y++ Sbjct: 61 NVIVMDLAREGEEPAPRYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLN 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+ L A C+QHE+DHL G+LFIDHLSRLKRD K+ K + Sbjct: 121 YQGEAVEEDAEELFAVCIQHEMDHLKGVLFIDHLSRLKRDRAISKVKKARR 171 >gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 170 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V DP+L R + + + + + L+++M E MY G+GLAA QIG+ R+ V+ Sbjct: 1 MTYPIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+II + + CLSIPD+R V R+ +TV+ D + Sbjct: 61 DVTFKEDPNAKLVLINPEIILTDGRQTSQEG-CLSIPDFREKVTRARRVTVKAQDLTGKW 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA HE DHLNG L+I H+S LKRD+I +K+ KL++ + Sbjct: 120 FEHTGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIKAGE 168 >gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217] gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217] Length = 170 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++ P+ + ID+M+E MY+ GIGLAA Q+ +L+V Sbjct: 1 MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQD R I +EGCLS+P A V R+ F+T++ +D + + Sbjct: 61 MDLQDDIERPK---IFINPEIVAKSGEFSNEEGCLSVPGVYAKVDRAEFVTLKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + AD L A C+QHE+DHL G LF+D+LS LKR I K+ K +L Sbjct: 118 PFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 165 >gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 205 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++I DP+L + P+ +S + L+ +M E M G+GLAA Q+GV R+ V Sbjct: 19 MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78 Query: 61 IDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D D V INP + +EGCLSIP R + R+ + +R +D Sbjct: 79 YDWIDDDDAHWRGVAINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVD 138 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + I A G LA QHE DHL+G+L+ D L Sbjct: 139 LDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172 >gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114] gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114] Length = 167 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703] gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102] gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens NRL30031/H210] gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703] gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102] Length = 167 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++HLS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164 >gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 169 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + Sbjct: 61 IDVSENRD---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13] gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13] Length = 166 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +++ +E + L+ +M E MY + GIGLAA Q+ V R++V Sbjct: 1 MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + D Y EGCLS+P + VKR IT+ Y D Sbjct: 61 IDISDDKKDLL---VLINPKLIKFDGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + ADGLL+ C+QHE+DHL G +FI++LS+LK+ I KK+SKL + Sbjct: 118 IKTLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKLSR 164 >gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638] gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638] Length = 169 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRE---ERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166 >gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 193 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++P+ + S++ LI++M E M G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60 Query: 61 IDLQDHA------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + D NP++ + T +D EGCLS+P R+ V Sbjct: 61 YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N + I A G A C+QHE+ HL+G L+ D L+ + M K++ + Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170 >gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 169 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++V Sbjct: 1 MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + D + +EGCLSIP+ RA V R+ + +R +D N + Sbjct: 61 IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNDK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +LR Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166 >gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296] Length = 201 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ Sbjct: 1 MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + GCLS+P ++ R + V +D + Sbjct: 61 FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRRGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 158 >gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109] Length = 167 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 1/158 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+ +L+ + P+ +I DI LID+M MY+ GIGLAA Q+G L R+++ Sbjct: 1 MAILEIQTYPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVII 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + V INP+II + CLS+ DY ADV+R A + +D N + Sbjct: 61 FDITPKNEGRKLNVLINPEIIAAEGAQVYQEA-CLSVLDYAADVRRKARVLATGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+ LLA LQHE+DHL+GILFID +SRLKR++ Sbjct: 120 EVRIEAEDLLAVVLQHEIDHLDGILFIDRISRLKRNLY 157 >gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 186 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ LI ++ + M + G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I GL+A C+QHE DHL+G+LFID L R K + Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIR 158 >gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359] Length = 164 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 5/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +F DP+LR+ ++P+ K + + I+ M+E MY DG+GLAA Q+G+ R V+D Sbjct: 4 VRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ INP+I+ S + + +EGCLS P+ +++RS + VRY + + Sbjct: 61 --VGNGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEE 118 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +G A QHE DHLNG+L ID + KR ++ K++ + + Sbjct: 119 LEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAK 160 >gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 81/168 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+LR R + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 13 VRPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 73 CPDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++ G A CLQHE DHL G L+ D L+ + + +++ + R+ Sbjct: 133 TVHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180 >gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 177 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+++ PD LR +RP+ +++ + L ML MY GIGLAA QIG L RLVV Sbjct: 5 SLLPILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DLQ + P V INP+I+ S + S +EGCLS+P+ A+V R A I VR++D Sbjct: 65 VDLQPDEKPE-PYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGA 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K ++ + Sbjct: 124 KREMQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQ 172 >gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614] gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614] Length = 181 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + SD+ EGCLSIP D +R+ R + Sbjct: 61 WYVDGEPGHLVNPQL------DLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA LQHE DHL+G+LFID L R K + + Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158 >gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19] gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19] Length = 177 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ P P+L++VS+P++K++ D+ L+D+MLE MY GIGLAAVQIG R++V Sbjct: 1 MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60 Query: 61 IDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +DLQ+ K P F+NP+II S++ + Y+EGCLS+P+ +V R + + + Sbjct: 61 MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +Y+D N ADGL A C+QHE+DHL G LFIDHLS+LKRD K+ KL + Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175 >gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638] Length = 170 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 97/166 (58%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K ++ +P+ L+ V +E++ ++ +IDNM+E MY DG+GLAA Q+GV RL+VI Sbjct: 1 MKLDILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ S +E CLS P ++ +KR +TV D Sbjct: 61 DPSGPKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGND 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I AD LA LQHE+DHL+G L +D + RLKR M KK+ K ++ Sbjct: 121 VRIEADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166 >gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 172 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L++ S + I +I L+ +M E MY G+GLAA QIGV R+++I Sbjct: 1 MIRTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ N ++ +I ++ S +EGCLS+P Y A+V+R A +TVR +D + Sbjct: 61 DVS-AHDEPNELIIAINPVIVHAEGESYEEEGCLSVPKYAANVRRHASVTVRGLDLEGRE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q +A+GLLA QHE+DHL+G LF+DHLS LKRD+ Sbjct: 120 QTWHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDLFQ 157 >gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190] gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190] Length = 182 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + + ++++ L+ ++ + M+ G GLAA QIGV R+ Sbjct: 1 MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ A +NP D+ EGCLSIP R D R + R + + + Sbjct: 61 YDVDGFAG-----HLVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + LLA C+QHE DHL+G+LF+D L R + ++ Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRLDAETRKLAMAEIR 158 >gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18] Length = 214 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR V PI + D+ LID+MLE MY G+GLA Q+G+ ++ Sbjct: 17 MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 76 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + GCLS+P ++ R + V +D + + Sbjct: 77 FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRHGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 132 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 174 >gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472] gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472] Length = 167 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E ++ + ID+M E MY GIGLAA Q+ RLVV Sbjct: 1 MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + I D +VY+EGCLS+P V R+ + V+ D + + Sbjct: 61 MDISEERD---ERRVFINPEIVEKDGETVYEEGCLSVPGIYDKVTRAERVKVKAQDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHELDHLNG++F++ LS++K+ I K+ K + Sbjct: 118 PFELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165 >gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 182 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L + P+ ++++ L+ ++ + M + G GLAA QIGV R+ Sbjct: 1 MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + T S + EGCLSIP D +R+ + + Sbjct: 61 YHVDGELGHLINPEL------TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +I LLA C+QHE DHL+G+LF+D L R K + + Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIRE 158 >gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 168 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L++ + PI +I+ DI L D+M E MY+ GIGLAA+Q+ RL+V Sbjct: 1 MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + +N ++ + I S QEGCLS+P V+R+ + VR +D + Sbjct: 61 V---DVSEARNELLTLVNPEIIESSGEEEMQEGCLSVPGVLETVRRAERVKVRALDLRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K K ++ Sbjct: 118 TLELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164 >gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C] gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 175 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH K P F P+II S++ + EGC+S+P+ R ++ RS I +RY+ Sbjct: 61 IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS +KRD+ +K+ KL + Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKLKKN 173 >gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 172 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ + I I + +EGCLS P A V R+ + ++ ++ Sbjct: 61 VMYDNLEEQNPEIIT-IINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168 >gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 185 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I GL+A C+QHE DHL+G+LF+D L R K + Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIR 158 >gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda] gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda] Length = 181 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 9/175 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ PDPIL++V+ P++ +N I L+D+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MSILSLITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIV 60 Query: 61 I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + D ++ K P+ +NP + S+ + +EGCLS+P +V R I Sbjct: 61 LDLSKVDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQ 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 V Y+D + + A+G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 121 VTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKIK 175 >gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389] gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389] Length = 175 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 70/173 (40%), Positives = 111/173 (64%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S+ + ++N+ I +D+M+E MY DG GLAAVQ+GVL R++V Sbjct: 1 MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60 Query: 61 IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++DH P+ +NP+II S++ + EGC+S+P+ R ++ RS I +RY+ Sbjct: 61 IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS +KR++ +K+ KL + Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKLKKN 173 >gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae] Length = 169 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L S +E +S I NL+++MLE M + G+GLAA Q+GV R+ Sbjct: 1 MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H INP +D + EGCLSIPD + + +R ++V D + Sbjct: 60 VYDCSHIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L ++ R ++ K Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHRKDAMAQIRK 163 >gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484] gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484] Length = 174 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 95/167 (56%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P+L++ + ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG R++VI Sbjct: 1 MVRSVLKYPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + ++ Y+EGCLS P +V R + + R +D + + Sbjct: 61 DTTPKRESPPVKLVLINPQLIEAEGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGEE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +G A QHELDHLNGI FID LS L+R + +K KL + Sbjct: 121 KEYQLEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKLQRQ 167 >gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4] gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4] Length = 183 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + + +LR+V+ PI ++ LIDNM + MY +G+GLAA Q+G+ RL+VI Sbjct: 1 MILPIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D D + INP+I+ S++ EGCLSIP V R+ I + Y+D Sbjct: 61 DLAPFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G A +QHE DHL G LF DH++ ++R ++ K++ +V+ + Sbjct: 121 PDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKGK 173 >gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 164 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + +L+ ++LE + + GLAA QIGV R Sbjct: 4 MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ D+ EGCLS+P R+A+ V +D + Sbjct: 64 WNIDDEVG-----YVLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL+A CLQHE DHL+G L++D L R R +++ + Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLDRLERSVRVRAMRELRE 162 >gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338] Length = 163 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V P+ ++ + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V + D++ EGCLSIP+ KR+ + D + + Sbjct: 61 YNIDGQIG----YVLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+A C+QHE+DHLNG L+ID L R R + + Sbjct: 117 PVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVRKKALRDIR 159 >gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24] Length = 197 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ + ++ L+ +M E M DG GLAA Q+GV R+ Sbjct: 3 MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D EGCLSIP V+R V +D + Sbjct: 63 YRI-----GGVEGHIINPVLENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHGH 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G+LA C QHE DHL+GILF D L R + + Sbjct: 118 PVTVDGEGMLARCFQHETDHLDGILFTDRLEGEDRKAALRSIRN 161 >gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264] Length = 194 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 22/192 (11%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ + IL++VS+P+ ++ + L+D+ML+ MY GIGLAAVQIG L Sbjct: 1 MAIRRILTIDNTADLAILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQ 60 Query: 57 RLVVIDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIP 98 R+VV+DL D NP F+NP++I SD+ Y+EGCLSIP Sbjct: 61 RVVVMDLGDGPAPEAAEAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIP 120 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 +Y V+R A + V Y+D +GL A C QHELDHLNG+LFIDHLSRL+RD Sbjct: 121 EYFDQVERPARVRVAYLDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRA 180 Query: 159 TKKMSKLVQLRD 170 K+ K ++LR+ Sbjct: 181 MSKVKKTMRLRE 192 >gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931] gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931] Length = 190 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR PI + ++ LID+ML+ MY +G+GLA QIG+ ++ Sbjct: 1 MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + EGCLS+P ++D R + VR +D + Sbjct: 61 FGGIDGREGYIINPVLETGTEPQEGG-----EGCLSVPGIKSDTPRMNWARVRGVDKTGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ +GL A LQHE DHL+G LFID L R + + + Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158 >gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 38 TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + + EGCLS+P A + R + VR D Sbjct: 98 DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203 >gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 171 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 92/169 (54%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V +P +L++ + + I+ ++ +LI +M + MY+ +G+GLAA QIGV ++VI Sbjct: 1 MVREIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + + + S+ Y+EGCLS P +V+R+ + VR ++ + + Sbjct: 61 DTTPKEDVPDLKLVLINPEVIASEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGEP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A QHELDHL GI FID L +R + +K KL + + Sbjct: 121 VEVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKLQKEAE 169 >gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1] gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1] Length = 200 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 106/173 (61%), Gaps = 6/173 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR++++P+EKI+++I ++D+M + +Y+ +GIGLAA Q+ + +++V Sbjct: 24 MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVRY 114 I + D + + + ++ + + + +EGCLSIP R VKRS + +R Sbjct: 84 IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGIKEGCLSIPGVREWVKRSERVKIRA 143 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +D + + ADGLLA C+QHE+DHL G LFID+LS LK I KK+ K Q Sbjct: 144 LDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196 >gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571] gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571] Length = 165 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV FPDP LR+ + P+ + + + ++L+ M + GIG+ G++ RLV Sbjct: 1 MAVLDLVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P ++NP+++ S + + EG +S+P +V+R A + V + + Sbjct: 61 L----ELPETAPAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGT 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLL+ CLQHE+D L+GI +I LSRLKR+ + KK KL++ Sbjct: 117 GHEVEADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163 >gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 193 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L +R + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114 + D + FINP + T ++ +EGCLS+P R+ + V Sbjct: 61 FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRADWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + + + G LA C QHE+ HL+G+++ D L + + K + Sbjct: 121 LNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKRLAKKTIK 169 >gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC 17982] Length = 163 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V + D++ EGCLS+P+ +R+ + D + + Sbjct: 61 WNIDGEIG----YVLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160 >gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 188 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + +++I ++ L+ +M E M + G+GLAA Q+GV R+ Sbjct: 1 MAVLPIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFT 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +D + D EGCLS P R ++RS + + Sbjct: 61 YTYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 D + + I G A LQHE DHL+GIL++D L ++ K K Sbjct: 121 DLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKIAKKRK 171 >gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001] gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001] Length = 275 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ P P+LR+ +R ++ + +DI ++ NM MY GIGLAA Q+G+ + + Sbjct: 108 APLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLS-QRFL 166 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + ++P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 167 LVDLGEKDARDPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGD 226 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ + Sbjct: 227 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 275 >gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11] gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11] Length = 169 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 1/160 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PDP+L + P+ I + L +ML+ MY G GLAA Q+GVL R+ V Sbjct: 1 MAVRPIVAWPDPVLSTPASPVIAITD-VAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + P++ INP+I SD EGCLSIP V+RS ++ + + D Sbjct: 60 MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 DG A C+QHE DHL+GI+ D +S + R K Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEK 159 >gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559] gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559] Length = 196 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + +P+L++ ++ I K + LI+NM E MY G+GLAA Q+G+ RL VI Sbjct: 1 MILPIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D +FINP I + D + EGCLSIPD R DV R Sbjct: 61 DPSPFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y+D N + G+ A +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 ITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISKGK 180 >gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970] gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970] Length = 181 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL ++ +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLSENRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178 >gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.] Length = 177 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 103/170 (60%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++P++ IN+D+ +ID+M+E MY GIGLA++QIG ++V Sbjct: 7 MAILDILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ H+++ V +NP II + EGCLS+PD R+DVKR+A + V +D Sbjct: 67 YDIDQTEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGN 126 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A LA LQHE+DHLNG+LF+D +S LKR++ + + K + + Sbjct: 127 PLKIEAHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKKQQKKNE 176 >gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231] Length = 177 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP LR ++P+EK+ ++ L+D++ E MY GIGLAA Q+ + +R++V Sbjct: 1 MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + P+ FINP+I+ + + + CLS+P Y V+R+ ++ V D + + Sbjct: 61 VDITE--AKNEPLAFINPQILERKGEEEMQEG-CLSVPGYFDTVRRAEWVKVHAQDRSGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + DGLLA C+QHE+DHL G LF+D+LS Sbjct: 118 PFELETDGLLAVCIQHEIDHLEGKLFVDYLS 148 >gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163] gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163] Length = 170 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPD LR ++ ++++N+DI ++D+M + MY +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + ++ + + + +EGCLSIP+ RA V R+ + VR +D + Sbjct: 61 IDVSEERDQRL---VLINPELIEKSGETGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A LLA C+QHE+DHL G LFID+LS LKR I +K+ KL + Sbjct: 118 VFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165 >gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 188 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + D+ L+ +M + M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + D +EGCLS P R + R+ +R + Sbjct: 61 YSYETDEGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + I A G A LQHE DHL+G+L+ D L+ + R + K + K Sbjct: 121 DLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169 >gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 188 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R ++ + D+ +L+ +M E M G+GLAA Q+GV R+ V Sbjct: 1 MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + D +EGCLS P R + R+ +R + Sbjct: 61 YSYETDDGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + I A G A LQHE DHL+G+L+ D L+ R + K + K Sbjct: 121 DLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169 >gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 192 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L + +R I + + + L+D+M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NPK+ D EGCLS P R+ + V Sbjct: 61 YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + + G A CLQHE DHL+G +++D L + KKM K + Sbjct: 121 DIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVG-RHARAAKKMLKSNK 171 >gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 167 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + ++ +I + S +EGCLS+P Y A+V R + V+ ++ + Sbjct: 61 DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 120 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 166 >gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW] Length = 186 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LRR ++P+E I + + +M+E M GIGLAA Q+ V +R+V Sbjct: 1 MAILKIARMGHPVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIV 60 Query: 60 VIDLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V + P V +NP S++ EGCLSIP R V R A I Sbjct: 61 VFRVPGDRATGGAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R + + A G A +QHE+DHL+GIL+ID + L R T++M Sbjct: 121 RGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEMR 171 >gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong] gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong] Length = 181 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 9/175 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV PDPIL++VS P++ +N I LID+MLE MY G+GLAA Q+ V R++V Sbjct: 1 MSILSLVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIV 60 Query: 61 I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + D ++ K P+ +NP + S+ +EGCLS+P +V R I Sbjct: 61 LDLSKVDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQ 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 V Y+D + + + A G LA +QHE+DHL+GIL +D+LS LK++ +SK+ Sbjct: 121 VTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKIK 175 >gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE] gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE] Length = 212 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + EGCLS+P A++ R + VR D Sbjct: 96 DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M + Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201 >gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 167 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++ Sbjct: 1 MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form, Cocrystallized With Inhibitor Polyethylene Glycol (Peg) gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex With Tripeptide Met-Ala-Ser gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In Complex With Inhibitor Polyethylene Glycol gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase Complexed With The Inhibitor Bb-3497 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase Complexed With Actinonin gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed With Antibiotic Actinonin gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Zinc- Peptide Deformylase Bound To Formate gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli Iron- Peptide Deformylase Bound To Formate gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide Deformylase Bound To Formate gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343 Length = 168 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165 >gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 185 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DPILR + + + + ++ L+ ++ + M+ G+G+AA QIGV R+ V Sbjct: 1 MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D A +NP D+ V EGCLSIP R D +R+ + VR +D + Sbjct: 61 YDTGDAAG-----HLVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LLA C+QHE DHL+G+LFID L R + + + Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAARKEAMRAIRE 159 >gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica FSC147] gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 172 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + I + + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IMYDNLEEQNPEIITI-INPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168 >gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 212 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 36 TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + + + + CLS+P A + R + VR D Sbjct: 96 DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R K+M++ Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201 >gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR V+ P+ ++ L+ +M E M +G GLAA Q+GV R+ Sbjct: 1 MAILSIRIIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP + D EGCLSIP V+R +D N Sbjct: 61 YRI-----GGVEGHIINPVLENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+G+LA C QHE DHL+G+L+ D L R + + Sbjct: 116 PVSVEAEGMLARCFQHETDHLDGVLYTDRLEGDDRKAALRAIRN 159 >gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091] gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76] Length = 181 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I LI +M E MY + GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 184 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 92/167 (55%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L I +I +I L +M E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREVLQYPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R+ M F+NP++ D + YRA V RS + + D + Sbjct: 61 DVSGPEKREALMTFVNPRLELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGNE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHE+DHL G LFIDH+SRLKR + ++ K+ + Sbjct: 121 VCMDADGLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQKN 167 >gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926] gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926] Length = 170 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 4/169 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+ + P+E +N +I +ID+M+E M+ G+GLAA QIGV R+ VI Sbjct: 1 MIYDIRTYGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D++D RK INP+ + FS + ++EGCLS+P VKR A + ++Y + N + Sbjct: 61 DIEDGKIRK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I A+GLL+ QHE DHL+ LF+D LS + + M++KK+ L + + Sbjct: 117 VIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQALKKETE 165 >gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e] Length = 165 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 2/165 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ +PD L +V++P+ K++ I L+ +M E MY+ GIGLAA Q+ V R++VID Sbjct: 1 MLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVID 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + + + VFINP+I+ D VY+EGCLS+P +V+R + VR +D + Sbjct: 61 VSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 118 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +GLLA C+QHE+DHL G +F+ +LS LK+ I KM KL + Sbjct: 119 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 163 >gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700] Length = 170 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ + P+ ++N D +ID+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TVR +D + + Sbjct: 61 IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + AD LLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ + R+ Sbjct: 118 EFTLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167 >gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 163 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I + L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V + D++ EGCLS+PD KRS + D + + Sbjct: 61 WNIDGDIG----YVLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTRKKALRDIR 159 >gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400] gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400] Length = 167 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDDHNEL--LTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R] Length = 173 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ + Sbjct: 1 MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP I +++ +EGCLS+P V R A I + Y + + Sbjct: 60 CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166 >gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945] gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2] gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62] gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107] Length = 181 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000] gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000] Length = 216 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827] gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827] Length = 195 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +RP+++ + ++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D + +NP + T D EGCLS P R+++ V Sbjct: 61 YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRASWAKVTGT 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + G A CLQHE DHL+G L++D L + +KKM K Sbjct: 121 DGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHK-RASKKMIK 168 >gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD L+ V+RPI +++ I L D+M E MY GIGLAA Q+ +RL+V Sbjct: 1 MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++ + + I +EGCLS+P V+R+ +TVR + Sbjct: 61 VDVSENRNDLL---TLLNPEIIARTGEEEMKEGCLSVPGVLETVRRAEKVTVRATTVQGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA CLQHE+DHL+G LFIDHLSRLK+ +I +K K V+L D Sbjct: 118 TVELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167 >gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3] gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3] Length = 192 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 20/189 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ P IL++VS+P+ ++ + L+D+MLE MY+ GIGLAAVQ+G L Sbjct: 1 MAIRRILTIDIPADLAILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALD 60 Query: 57 RLVVIDLQDHAHRKN----------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100 R++V+DL D P F NP+I+ SD+ Y+EGCLSIP+Y Sbjct: 61 RVIVMDLGDRDGTICETEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V+R A + +RY++ + Q A+GL A C+QHE+DHLNG+LFIDHLSRLKRD Sbjct: 121 FDKVERPARVRIRYLNRDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVT 180 Query: 161 KMSKLVQLR 169 K+ K + R Sbjct: 181 KVKKAARDR 189 >gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 240 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 78/162 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL I DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 52 VRPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYD 111 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 112 CPDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPV 171 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G +++D L+ +R + ++ ++ Sbjct: 172 TVRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAAR 213 >gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 167 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++++P+E +N I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 1 MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + FINP+II SD+ + +EGCLS+P +V+R+ + VR ++ + Sbjct: 61 IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +GLLA C+QHE+DHL G +F+++LS LK+ I KM KL Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164 >gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39] gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39] Length = 184 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V PIE+ ++ LI NM E MY+ G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D V+IN +I+ + + + EGCLSIPD R DV R I +RY D N + Sbjct: 61 DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 G+LA +QHE DH+ G LF + LS L++ M+ K+ + + Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKLDAISKG 168 >gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 171 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VV Sbjct: 1 MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + VFINP+I+ S + ++EGCLS+P++ +V+R A I V+ +D + + Sbjct: 61 IDVSDEQNELM--VFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I ADG LA CLQHELDHL G +F+++LS KR I++KM K + Sbjct: 119 EFEIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166 >gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1] Length = 193 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L R +RP+E+++ I L+D+M E M + +G+GLAA Q+GV RL V Sbjct: 1 MTVLRIRMVGDPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIIT------FSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D R + ++ D +EGCLS+P R+ + V Sbjct: 61 YDCPDEETRTMRRGLVVNPVLETSERPQVMPDPDDDEEGCLSVPGESYPTGRADWARVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 D + + + G A CLQHE DHL+G L++D L + KKM K Sbjct: 121 TDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMG-RNQKAAKKMLKQ 170 >gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 186 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 112/169 (66%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ P P+LR+ +R ++ + ++I ++ NM MY GIGLAA Q+G+ R ++ Sbjct: 19 APLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFIL 78 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + R P+V INP++I ++D +V +EGCLS+P+ A+V R I VR+ + N Sbjct: 79 VDLGEKDARD-PIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGD 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ + Sbjct: 138 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 186 >gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 189 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI P+L R + + + ++ + L+ ++ E M ++ G+GLAA QIGV R+ Sbjct: 1 MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ +NP + D EGCLS+P +KR+ ++ + Sbjct: 61 YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N A+G A +QHE DHL+G L++D L+ K + + Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRR 169 >gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542] gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542] Length = 162 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++L+ + GLAA QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D V + D++ EGCLS+P+ +R+ + V D + Sbjct: 61 WNIDDEIG----YVLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ L+A CLQHE+DHL+G L++D L + R + + + Sbjct: 117 KVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVRKKAMRALRE 160 >gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061] Length = 168 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + + + L+D+MLE MY + +GIGLAA Q+G ++ Sbjct: 1 MAILDILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + P V +NPKI+ + CLSIP Y ADV+R + V D Sbjct: 60 VIDLSPDRDK--PTVLVNPKIVEKERRVVNQEG-CLSIPGYYADVERFEKVKVEAFDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I ++ L+ +QHE+DHLNG++FID+LS L+R M KK+ K + R+ Sbjct: 117 NQTTIESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167 >gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563] Length = 173 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR+V+ +E IN +I ++ NMLE MY+TDG+GLAA Q+G+ R+ + Sbjct: 1 MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP I +++ +EGCLS+P V R A I + Y + + Sbjct: 60 CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQALKKE 166 >gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768] Length = 181 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+E+++ + L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 15 MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 75 MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178 >gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332] Length = 161 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI++I + L+++++E + GLAA QIGV R Sbjct: 1 MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + D+F +EGCLS+PD KRS + D + + Sbjct: 61 WNIEGEIG----YILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 +++ +GL+ C+QHE+DHL+G L+ID L R R + + L Sbjct: 117 KKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161 >gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2] gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2] Length = 169 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 3/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V++PD LR V +P+ ++ ++ LID M MY GIGLAA Q+ V RL+V Sbjct: 1 MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + K+ + + I + ++EGCLSIP A V R + I VR MD + + Sbjct: 61 V---DISETKDEPIALLNPEIIKTAGKITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+ LLA C+QHE+DHLNG LFIDHLS LKR +K K + Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKKEM 163 >gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC033] gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC022] gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] Length = 174 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + I I + + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IMYDNLEEQNPEIIT-IINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 122 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032] Length = 168 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P P+LR+ + I + ++ LI++M + MY+ G+GLAA QIGV +LV+ Sbjct: 1 MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +N +V INP+ I+ + +EGCLS+ + VKR I V +D Sbjct: 61 VDRSTKDNERNYLVLINPE-ISAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A+ A +QHE+DHL G LFID LS Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLSS 151 >gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074] gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074] gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074] Length = 218 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R ++ + ++++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + + EGCLS+P A++ R + VR D Sbjct: 102 DCPDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEK 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 162 GNPIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207 >gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5] Length = 196 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ ++ I LI+NM + MY G+GLAA QIG+ R+ ++ Sbjct: 1 MIIPIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFLV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D F+N +I+ + + EGCLSIP DV R Sbjct: 61 DTTPFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKPK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+RY D N + DGL+A +QHE DH+ G+LF D LS LK+ +I K+ + + + Sbjct: 121 VTIRYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKLVNISKGK 180 >gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406] Length = 184 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++V++ IEK + D++ + +M E M + G+GLAA Q+ + R+ VI Sbjct: 1 MIYPIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVI 60 Query: 62 D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D FINP I D Y+EGCLSIP RADV R A + +RY D + Sbjct: 61 DTSVFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + DG+ A +QHE DH+ G+LF+DHLS +K+ ++ K++ + + Sbjct: 121 WKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISKG 170 >gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 191 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L ++ P+ ++ +I L+ +M E MY+ G+GLAA Q+ V R++V Sbjct: 25 MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D ++ + ++ + IT + S Y+EGCLS+P V R+A ITV ++ + + Sbjct: 85 I---DVSNTHDQLLVLINPEITTHEGESDYEEGCLSVPGIFGKVPRAAQITVEALNKDGE 141 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHE+DHL G +F+++ SR+K+ I K K + Sbjct: 142 RFTLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRR 188 >gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG] gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112] gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE] gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG] Length = 174 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + ++ I I + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1] gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1] Length = 174 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P+L + + P+ +I I L M E MY+ GIGLAA Q+G RL+VI Sbjct: 1 MPLEILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL R+ M +NP +IT + +EGCLS+ YR V+R+A +TV +D Q Sbjct: 61 DLSGPDKREALMTLVNP-VITAASGEQEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I AD LLA CLQHE+DHL+G+LFID +SRLKR M K++ + Q Sbjct: 120 LTIEADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165 >gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 175 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + FPD +LR + P++ I+ I L+DNM+E M++ G+GLAA Q+G+ RL+VI Sbjct: 1 MILEVKTFPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + INP+II+ + V +EGCLSIP V+R+ +TV+ MD N + Sbjct: 61 DTSAGENEGMLLRVINPEIISAEGE-QVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+G LA QHE+DHL+G+LFID L K+D + K + + Sbjct: 120 YTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKR 162 >gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] Length = 193 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114 D D + FINP + T ++ +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + + A+G LA C QHE+ HL+G L+ D L + M K + Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169 >gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 192 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ + I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60 Query: 62 D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +D + + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ + + Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175 >gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 166 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 88/166 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L+ +E I +I L+ +M E MY+ G GLAA Q+GV+ RL V Sbjct: 1 MSVLPIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D NP+V INP I+ SD S +E CLSI ADV R I + Y N + Sbjct: 61 MDATWKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +G A C QHE+DHL+G + DHL +R + K +++ Sbjct: 121 RVTAVIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166 >gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R] gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R] Length = 193 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ + + S++ LI +M E M +G+GLAA QIGV R+ V Sbjct: 1 MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114 D D + FINP + T ++ +EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + + A+G LA C QHE+ HL+G L+ D L + M K + Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169 >gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy] gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy] Length = 167 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 4/166 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + D +L +P+ K +S + L+D M E M DG+GLAA Q+GV RL VI Sbjct: 1 MLDIYTLGDEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIH 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +Q +R INP+II S + +EGCLSIP DV+R A +TV+ D + Sbjct: 61 IQGSENRAY----INPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVF 116 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA +QHE DHLNG+LFID L+ +R+ + K K +L Sbjct: 117 TVKAEGLLARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162 >gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5] gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5] Length = 186 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ ++++ LI ++ + M G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLSIP D KR + + + Sbjct: 61 FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I GL+A C+QHE DHL+G+LF+D L R K + Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIR 158 >gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 185 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + I +I L+ NM E MY+ GIGLAA Q+ V R++V Sbjct: 18 MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ ++ + I S + QEGCLS+P V R+ +TVR + + Sbjct: 78 I---DVSETRDELLVLINPEIIASSGNAETQEGCLSVPGIFDKVTRAEEVTVRATGIDGK 134 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA C+QHE+DHL G +F+++LS K+ I K+ K + + Sbjct: 135 SFEMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183 >gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 186 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR + P+ + ++ L+ ++ + M +G GLAA Q+GV R+ Sbjct: 1 MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D +NP + + EGCLS+P D KR + R + + Sbjct: 61 FDVDD-----VIGHLVNPVLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGHGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I GL+A C+QHE DHL+G+LFID L R K + + Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQAQ 161 >gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ ++ +P+L + R + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 24 TARPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVY 83 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ NP + D EGCLS+P ++ R + VR D + Sbjct: 84 DCMDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLD 143 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + G A CLQHE DHL G L+ D LS+ R + K+M++ Sbjct: 144 GEPIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189 >gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A] gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A] Length = 186 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR++++ I + ++ LI +M E ++DG+GLAA Q+G R+VVI Sbjct: 1 MILPIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + V +EGCLS+P V+R + V+++ Sbjct: 61 DLDVVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + + G LA +QHE DHL G +F D +S ++ MI KKM L+Q + Sbjct: 121 DENMEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQGK 174 >gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206 >gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134] gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134] Length = 183 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ + I +D+ L++NM E MY G+GLAA QIG RL VI Sbjct: 1 MIYPIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVI 59 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D A + M FINP I+ V++EGCLSIPD R +V R I ++Y D N Sbjct: 60 DPEPMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNW 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + DG+ A +QHE DH+ G+LF D+LS K+ ++ +++K+ + Sbjct: 120 KEHEAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISKG 168 >gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1] gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1] Length = 171 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LRR ++ + + D+ LID+M+E M + G+GLAA Q+GV R++V Sbjct: 1 MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + +D K +NP+I+ S + EGCLSIP +V+R I V+ + Sbjct: 61 VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + G A QHE+DHL GIL+ D + + Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRATSV 158 >gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName: Full=Polypeptide deformylase 4 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 216 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP+++ D EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 216 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P + R + V D Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA] Length = 182 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP+L++ + P+ IN L+ +M E MY G+GLAA QIGV R++VI Sbjct: 16 MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 75 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + ++ +I + S +EGCLS+P Y A+V R + V+ ++ + Sbjct: 76 DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA QHE+DHL+G+LF+DHLS LK++M KK ++ + Sbjct: 135 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 181 >gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 34 TARPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVY 93 Query: 62 DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V +NP + EGCLS+P A++ R + V D Sbjct: 94 DCPDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQ 153 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 154 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199 >gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300] Length = 192 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+LR+ ++ I++ +I LI NM + MY+ G+GLAA QIG+ R+ VI Sbjct: 1 MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60 Query: 62 D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +D + + VFINP I+ + + + EGCLSIPD +V R A + + Sbjct: 61 DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Y+D N + I GL A +QHE DHL G LF D L LK+ M+ K+ + + Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175 >gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548] Length = 174 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + ++ I I + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+Q Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170 >gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 167 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + NP+I+ S F ++EG ++P A V R +TVR+++ + Sbjct: 61 DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692] Length = 167 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +PDP+L R + P+ +I+ ++ L +M+E MY+ GIGLAA Q+G +RL+ + Sbjct: 1 MTLSICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + +NP+I + +EGCLS+P++R+ V+R+A + V D + Sbjct: 61 DISGPENQTELVTLVNPEIQWRDGETET-EEGCLSVPEFRSKVQRAAKVRVTGQDLDGNA 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK + Sbjct: 120 VDMEADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKWQKQ 166 >gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1] gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1] Length = 196 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V F DP+LR+V++ I ++ L++NM E MY+ G+GLAA Q+G+ RL +I Sbjct: 1 MILPIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMI 60 Query: 62 D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D Q VFIN KII + + V+ EGCLSIPD R DV R Sbjct: 61 DATGFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPES 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + YMD N + + DGL A +QHE DH+ GILF D LS LKR ++ +++ + + R Sbjct: 121 IKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180 >gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287] gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287] Length = 196 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60 Query: 62 DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KI+ + D + EGCLSIP R DV R Sbjct: 61 DASPFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + + Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180 >gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314] Length = 167 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++ + K++ I L+ +M E MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + +I D + Y+EGCLS+P V R+ + V ++ + Sbjct: 61 MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ADGLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164 >gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase Length = 164 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 64/167 (38%), Positives = 107/167 (64%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164 >gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87] gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87] Length = 196 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ ++PI+K + LI NM + MY+ G+GLAA Q+GV RL VI Sbjct: 1 MILPIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + VFIN K+I + D + EGCLSIPD R D+ R Sbjct: 61 DAAPFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y D N + + GL A +QHE DH GILF + +S LK+ +I ++ K+ + Sbjct: 121 VTIEYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKISSGK 180 >gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2] gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2] Length = 161 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LR ++ + K NS++ L+ +M E MY DG+GLAA QIG+ R++V Sbjct: 1 MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + + +I ++ V EGCLSIP+ DVKR I + D Sbjct: 61 VDIGDETGLISMV----NPVIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A G LA QHE+DHLNGILF D Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144 >gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6] Length = 190 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV R+ V Sbjct: 1 MTVLPITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + D +EGCLS P + +KR+ + V Sbjct: 61 YKYANDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D N Q A G A +QHE DHL+G L+++ L Sbjct: 121 DGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155 >gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 205 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++I P L+ +RP+ ++ + +L+ M MY GIGLAA QI L RL V+ Sbjct: 36 LLPILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVV 95 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + P+V INP II S++ + +EGCLS+P+ ADV R A I +RY D + Sbjct: 96 DVSPDDQKA-PLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSR 154 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K + Sbjct: 155 REMEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAKEQRQ 201 >gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+D+M + +G+GLAA QIGV ++ V Sbjct: 41 TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + EGCLS+P A++ R + V D + Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + G A CLQHE DHL G L+ID LS+ R ++M Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQM 204 >gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 190 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DPILR+ + IE+ + LI+NM + MY ++G+GLAA QIG R+ V+ Sbjct: 1 MVLPIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVV 60 Query: 62 DLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D + A +FINPK I D + EGCLSIP+ DV R I Sbjct: 61 DCRPFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWKFTEGCLSIPNIHEDVTRPDGI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 T+ Y+D N GL A +QHE DHL+G LFID+LS K+ +I+ K+ + + Sbjct: 121 TLTYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISKG 178 >gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1] Length = 167 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++ + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSENRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEI 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHLNG L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 181 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +F DP+LR + + + ++ L+ ++ + M G GLAA QIGV R+ Sbjct: 1 MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + ++ SD+ EGCLSIP + +R+ + + + + + Sbjct: 61 YWVDGIVGHLV------NPLLALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ LLA +QHE DHL+GILF+D L R + + + Sbjct: 115 PVVLEGTELLARAVQHETDHLDGILFVDRLDPAARKAAMRAIRE 158 >gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + D EGCLS+P ++ R + VR D Sbjct: 102 DCLDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAE 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R + ++M++ Sbjct: 162 GNPITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207 >gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 172 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ ++ I I + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKVNRATRVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168 >gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington] gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington] Length = 175 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L++ S+P+ + + +MLE MY+ +G GLAAVQ+GVL R++V Sbjct: 1 MSIYSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 ID++ H + P F I+ + EGC+S+P+ R +V R + +RY+ Sbjct: 61 IDIKAHDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173 >gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 188 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L++V+ IEK ++ LI+NM E M + +G+GLAA QIG+ RL VI Sbjct: 1 MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60 Query: 62 DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D A +FINP I S + EGCLSIPD R DV R IT+ Y D Sbjct: 61 DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 N H +GL A +QHE DH+ G LF D +S LK+ M+ K+ +V+ Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKG 172 >gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 179 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 8/178 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V+ PD L + + IN I L+++M E MY+ +G+GLAAVQIGVL R+ V Sbjct: 1 MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q + P INP+I SD+ + +EGCLSIP+ +++R ++TV Sbjct: 61 MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM KK K + + Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYE 178 >gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis] gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis] Length = 282 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 89/164 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILRR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 90 LKIVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNP 149 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V INP++ +S + EGCLS P ADV R + + D N Sbjct: 150 VGERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFT 209 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL A QHE DHL GILF D ++ D I ++ L + Sbjct: 210 VNLSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEK 253 >gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2] Length = 200 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI+ +P+L + + I + ++ LI +M E + +++G+GLAA QIGV R+ V Sbjct: 10 MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69 Query: 61 IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + +D ++ D EGCLS+P +KR+ +TV Sbjct: 70 FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +D Q + A+G A +QHE DHL G L++D L + +KK K Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDK----RWSKKWKKEQ 177 >gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271] Length = 196 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I + LI NM + M + G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60 Query: 62 DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KI+ + D + EGCLSIP R DV R Sbjct: 61 DASPFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + Q + GL A +QHE DH+ GILF D LS KR +I K++ + + + Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180 >gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH] gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH] Length = 174 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P+ +L+++S+P+E+ + D+ L+D+M E M +G+GLAA+Q+ V R ++ Sbjct: 1 MAVLDIVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+ D +++ I F D EGCLS+PDY +V+R + V++ D Sbjct: 61 IDIGDEEGKQSKDTLIEVINPEFLTWDGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ++ A+GLL+ QHE DHL+G LF++ L +KR K+ Sbjct: 121 GKEHVMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164 >gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201] gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201] Length = 249 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 15/179 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++ + + + + L+ +M+E MY+ G+GLAA Q+GV ++ Sbjct: 1 MSILRIRTIGDPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ ++ + EGCLS+P + R T+ +D + + Sbjct: 61 WGIEGDEGHVV------NPRLSVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---------SKLVQLRD 170 A GLLA C QHE DHL G L++D L R +++ ++ + RD Sbjct: 115 PVHRDATGLLARCFQHETDHLRGTLYVDRLEGEHRRDAMRQLRGEAFRATAERIARERD 173 >gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 163 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR V PI +I ++ L++++LE + GLAA QIGV R Sbjct: 1 MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V + D++ EGCLS+P+ +R+ + D +A+ Sbjct: 61 WNIDGEIG----YVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDAK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ + L+A C+QHE DHL+G ++ID L R R + + Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160 >gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 177 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + DP+L + P++++ + L+ +MLE M S G+GLAA Q+GVL R+ V Sbjct: 1 MIRKLRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVY 60 Query: 62 DLQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D NP INP ++ + QEGCLSIPD AD +R + V + Sbjct: 61 DCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + A GLLA C+QHE DHL+G+LFI L++ +R K++ Sbjct: 121 DENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEIRN 169 >gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 167 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ V+ P+E + +I + +M+E M + G GLAA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHL+G L+ID LS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164 >gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24] gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24] Length = 190 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA Q+GV RL V Sbjct: 1 MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + D EGCLS P + +KR+ + V+ Sbjct: 61 YKFANDDGVPPAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + A A +QHE DHL+G L+++ L D +K K + Sbjct: 121 DGDGNPVDFEATEWFARIIQHEYDHLDGKLYVNRL----MDRYARKAMKQAK 168 >gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 186 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 81/162 (50%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L+++M MY+ +G+GLAA QIGV R+ V D Sbjct: 13 VRPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP++I EGCLS+P A +R V + + Sbjct: 73 CPDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL+G +++D +S + + ++ ++ Sbjct: 133 RVLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAAR 174 >gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 172 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + ++ I I + +EGCLS P A V R+ + ++ ++ Sbjct: 61 IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 120 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166 >gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 164 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 65/162 (40%), Positives = 105/162 (64%), Gaps = 3/162 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 2 LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + + + + +EGCLSIP+ RA V R+ + +R +D + + A Sbjct: 62 RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEA 118 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 DGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 119 DGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160 >gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E] gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii] gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22] Length = 175 Score = 131 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L++ S+P+ + + +MLE MY+ DG GLAAVQ+G+L R++V Sbjct: 1 MSIFSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILV 60 Query: 61 IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID++++ P+ +NP+II S + EGC+S+P R +V R + +RY+ Sbjct: 61 IDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L +D+LS LKRD++ +K+ KL Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173 >gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 172 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P PIL+ +++ + E+I+ D I M E+M +G+GLAA+Q+G+ R Sbjct: 1 MSLEILKYPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ ++ I I + +EGCLS P A + R+ + ++ ++ Sbjct: 61 IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKINRATRVKIKALNEFG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q + D LA C+QHE+DHLNG+ F DHL LKR MI KK KL+Q Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168 >gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756] Length = 171 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M P++ +PDP L R + P+E+ + ++ + + ++ E MY+ G+G+AA Q+ L R+V Sbjct: 1 MAVLPILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIV 60 Query: 60 VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++D++ + + +V +EGC+S+PD+ +V R+ I V+ D + Sbjct: 61 LVDVRPKLGDDCHGFLCLINPELIAWEGMAVGREGCMSVPDFTGNVIRAERIQVQAQDLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +I G A +QHE+DHL+G LF+D L K D+ +K + Sbjct: 121 GRSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRKRYQQK 168 >gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 191 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L +R +E + ++ L+D+M E M + G+GLAA QIGV RL V Sbjct: 1 MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NP + D EGCLS+P R+ + V Sbjct: 61 YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + G A CLQHE DHL+G L++ L K + + Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKR 169 >gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1] Length = 154 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR ++ + +I + L+++M+E MY +GIGLAA Q+G+ R++V Sbjct: 1 MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + I + EGCLS P +V+R +TVR D + Sbjct: 61 IDVQDETGVLK----LINPEIISGEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I A GLLA QHE+DHL+GILF+D ++RL Sbjct: 117 TVEICASGLLARAFQHEIDHLDGILFVDKVTRL 149 >gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3] gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3] Length = 173 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 103/168 (61%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P +L+ + P+ I+ + LID+M + MY+ G+GLAAVQ+ RLV+ Sbjct: 1 MTVLDIVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D ++ V INP+++ + QEGCLS+P+ R DVKR+A + V +D + Sbjct: 61 YDVSDQREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I A+GL A LQHE+DHLNG L +D SRLKR++ +K+ K ++ Sbjct: 121 PLVIDAEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIKQ 168 >gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14] gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14] Length = 216 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205 >gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1] gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22] gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1] gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4] gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22] gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a] gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b] gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A] gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22] Length = 184 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+++ ++ LI++M + M++ +G GLAA QIGV RLV Sbjct: 1 MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INPK+ S + EGCLS+P R V R + + Sbjct: 61 IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D ADG A +QHE DHL+GIL+ ++ L Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDL 159 >gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2] gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483] gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f] gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23] gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 184 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp. novicida GA99-3549] gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549] Length = 174 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + ++ +P P+L+ V++ + K IN D+ I M E+M +G+GLAA+Q+G+ R Sbjct: 3 MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + ++ I I + +EGCLS P A V R+ + ++ ++ Sbjct: 63 IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I DG LA C+QHE+DHLNGI F DHL LKR MI KK KL+ Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168 >gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386] gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386] Length = 162 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 5/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + +P+LR VS+ + +I +I ++D M+E M G+GLAA Q+G+ R V ++ Sbjct: 2 KIIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVD 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + INP+II F + +EGCLSIP VKR I VRY + + Sbjct: 62 GNVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEE 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + A QHELDHL+GILFID +S L + +I+K+++++ + + Sbjct: 117 ELNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQIKKEGN 162 >gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2] gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2] Length = 171 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+P+L++ + P++ I+ ++ +ID MLE MY+ GIGLAA Q+GVL R++V Sbjct: 1 MSHMKIFTYPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D NP + INP+I+ + CLS+PD+ A+V R+A I V+ +D N + Sbjct: 61 FDGSPREEGANPQILINPEIVAAEGSIKWDEA-CLSVPDFTAEVNRNANIQVKGLDRNGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A LLA CLQHE+DHL+GILFID +SR Sbjct: 120 PLELEAKDLLAVCLQHEIDHLDGILFIDRISR 151 >gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4] gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4] Length = 154 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 1 MVKKPLVIFPD---PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +V D +LR ++P++KI I LI +M E MY G+GLAA Q+GV R Sbjct: 1 MAVRKIVTLGDSGDKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V+D + ++ + + EGCLSIP +V R+A + VR + Sbjct: 61 VIVVDTGSNLYQLINPEIVAREGEEKGR------EGCLSIPGVWGEVVRAASVLVRALTP 114 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I ADGLLA LQHE+DHL+GILFID ++ Sbjct: 115 EGREVSIEADGLLARALQHEIDHLDGILFIDRAEKV 150 >gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C] gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C] Length = 211 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R + + + ++ LID+M + +G+GLAA QIGV ++ V Sbjct: 35 TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V +NPK++ EGCLS+P A + R + V D Sbjct: 95 DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200 >gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +F DP+LR + ++ + + L+ N+ + M G GLAA Q+GV R+ Sbjct: 1 MSIVPIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D NP + ++ EGCLSIP D R + + + Sbjct: 61 FDVDD-----VIGHLANPVLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I GL+A CLQHE DHL+GILF+D L +R K++ Sbjct: 116 PMQIVGTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEIR 158 >gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1] gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1] Length = 214 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R + + + D+ LID+M + +G+GLAA QIGV ++ V Sbjct: 38 TARPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVY 97 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V INPK++ EGCLS+P A + R + V D Sbjct: 98 DCPDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQ 157 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M + Sbjct: 158 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203 >gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel] gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel] Length = 175 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L++ S + ++ +D+ML+ MY D GLAAVQ+G+L R++V Sbjct: 1 MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 ID++DH + P F I+ + EGC+S+P R +V R I ++Y+ Sbjct: 61 IDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + Q + A+ LA +QHE DHL G L ID+LS LKRD++ +K+ KL Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKLKNN 173 >gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia Chaffeensis Length = 209 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V Sbjct: 22 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 81 Query: 61 IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +++ + P INPKI+ S + +EGCLS+P Y Sbjct: 82 MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 141 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + R I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ Sbjct: 142 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 201 Query: 164 KLVQ 167 K + Sbjct: 202 KKER 205 >gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9] Length = 165 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 3/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LR V++ + K ++ L+++M + MY +G+GLAA QIG+ R++V Sbjct: 1 MSIRIIVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + +V +I S+ EGCLSIP+ DV R+ + V D N Sbjct: 61 VDIGEEESGLIEVV---NPVIVLSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A G LA QHE+DHLNGILF D Sbjct: 118 PIEVDASGFLARAFQHEIDHLNGILFTD 145 >gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 199 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 79/162 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA QIG R+ V D Sbjct: 31 VRPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFD 90 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 91 CPDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPV 150 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL G ++ DHLS + + +++++ Sbjct: 151 TLHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVAR 192 >gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 216 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK++ + EGCLS+P A + R + V D Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+ +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + + E ++P A +KR +TVR+++ + Sbjct: 61 VDGSAERGRA--VRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFLNEKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162 >gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 188 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L + +R I + + + L+++M E MY+ +G+GLAA QIG+ R+ V Sbjct: 1 MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D D ++ V +NPK+ D EGCLS P R+ + V Sbjct: 61 YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + G A CLQHE DHL+G +++D L K + K Sbjct: 121 DVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169 >gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 209 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + R + + + + LID+M + +G+GLAA QIGV ++ V Sbjct: 33 TARPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVY 92 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NP + D EGCLS+P A + R + VR D Sbjct: 93 DCPDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAE 152 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 153 GKPIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198 >gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 180 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +R + + + + I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NPMV INP II ++ SV +EGCLS+P+ A+V R + VRY D + Sbjct: 74 ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K +LR Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179 >gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277] gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277] Length = 189 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VI Sbjct: 1 MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D V IN I +D EGCLS+P V+R I +RY+D Sbjct: 61 DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ + Sbjct: 121 EDFQPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173 >gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74] gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74] Length = 210 Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ + +P+L + + ++ L+D+M + +G+GLAA Q+GV ++ V D Sbjct: 35 VLPITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYD 94 Query: 63 LQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 QD ++ V NPK+ EGCLS+P A R+ + V D + Sbjct: 95 CQDDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHG 154 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 155 NAIKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199 >gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 190 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI +P+L R + ++ + + L+ +M E +G GLAA QIG+ R+ V Sbjct: 1 MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +++ V +NP ++ + D EGCLS+P +KR+ ++ V Sbjct: 61 YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D A G A C+QHE DHL+G L++D L D +K ++ + + Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRLV----DRYQRKARRIAKDK 170 >gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 216 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + + ++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118 D QD R++ V NPK++ D E CLS+P A + R + V D Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22] Length = 216 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ + +P+L + + + + ++ L+D+M + +G+GLAA Q+GV ++ V Sbjct: 40 TSLPITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D +++ V NPK++ EGCLS+P + R + V D Sbjct: 100 DCPDDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205 >gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 167 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + ++N L+ +M E MY+ G+GLAA Q+ V +++V Sbjct: 1 MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + + ++ I +EGCLS+P +V+R+ I+VR ++ + Sbjct: 61 V---DVSETHDELLVFINPEILHRSGEQEGEEGCLSVPGIYENVRRADKISVRALNQQGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+G LA C+QHE+DHL+G +F+++LS+LK+ + K+ K + Sbjct: 118 SFTLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165 >gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum] Length = 279 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I+ ++++ L+D M ++MY TDGIGL+A Q+G+ +L+V + Sbjct: 87 LKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNA 146 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP++ +S Y+EGCLS P DVKR + V D N Sbjct: 147 AGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFE 206 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I L A QHE DHL G+LF D ++ D I +K+ L + + Sbjct: 207 ISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYE 253 >gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624] Length = 198 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+ PI K ++ LI++M + MY ++G+GLAA Q+G+ RL V+ Sbjct: 1 MILPIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVV 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KI+ + + EGCLSIP DV R Sbjct: 61 DTEPFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D + GL+A +QHE DH+ GILF DHLS K+ ++ K++ + + Sbjct: 121 IVIEYQDEHFATHTETFSGLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNISNGK 180 >gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 168 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +++ + + +I L NM E MY+ G+GLAA Q+ V R+VV Sbjct: 1 MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + ++ ++ + I S S QEGCLS+P V R+ ITVR D + + Sbjct: 61 I---DTSETRDELLVLINPEIIASTGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A GLLA C+QHE+DHL G +F+++LS K+ I K+ K + + Sbjct: 118 SFEMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQARKQ 166 >gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053] gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053] Length = 194 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 13/180 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DPILR+ +R IEK D+ L ++M E M+ +G+GLAA QIG+ R+ V+ Sbjct: 1 MIYPIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVV 60 Query: 62 DLQDHAHR-------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D A R FINP+I+ + + ++EGCLSIP R DV R Sbjct: 61 DGTPFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPE 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +RY D + G+ A +QHE DHL G LF+D+L LK+ I KK++ + + Sbjct: 121 TLRIRYRDLDWNEHEETYSGMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISKG 180 >gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83] gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83] Length = 189 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E MY +DGIGLAA QIG+ R++VI Sbjct: 1 MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60 Query: 62 DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D V IN I +D EGCLS+P V+R I +RY+D Sbjct: 61 DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q G A +QHE DH++G LFIDH+S +++ +I K+ +++ + Sbjct: 121 EDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173 >gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393] Length = 170 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ V P+ +N D +ID+M + MY +GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I ++ + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIEGDKQNQL---VLINPEILDAEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ K+ + + Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKVKKQME 167 >gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680] gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 216 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + + + +++ L+ +M + +G+GLAA QIGV ++ V Sbjct: 40 TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D QD ++ V NPK++ D EGCLS+P A + R + V D Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L+ID LS+ +R ++M++ Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205 >gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 190 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I+ +P+L R + +E + ++ LI +M E + +G+GLAA QIGV RL V Sbjct: 1 MTVLPVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + V +NP + D + EGCLS P ++R+ + V+ Sbjct: 61 YKYANDDDVPEQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N A G A LQHE DHL+GIL+++ L K+ K Sbjct: 121 DGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDRYSKKALKQAKK 169 >gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1] Length = 163 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 188 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +F DP+L + P+ + ++ L+ ++ E M G GLAA QIGV R+ Sbjct: 8 TVQAIRLFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTW 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + SD+ EGCLSIPD KR+ + + + + Sbjct: 68 NVDNELGHLV------NPTLDLSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEP 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +LA C+QHE DHL+G+LFID L R R + + Sbjct: 122 VEVEGSEMLARCIQHETDHLDGVLFIDRLDREWRKKAMRAIR 163 >gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera sp. (strain APS) gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 173 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+++IN I + ++M++ MY +GIGLAA Q+ + +++V Sbjct: 1 MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + I + +EGCLSIP+Y+A + RS +I V+ ++ + + Sbjct: 61 VNTMEQKKNNL---VLINPKIIKKEGDISIEEGCLSIPEYQASIPRSNYIQVQAVNLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A +L+ C+QHE+DHL G LFID+LS+ KR+ I KK K+ + Sbjct: 118 KIEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINK 164 >gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 196 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L+ ++ I+K ++ LI NM E M+ G+GLAA QIG+ R+ ++ Sbjct: 1 MVLPIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLV 60 Query: 62 DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FINP I+ S D + EGCLSIPD R DV R Sbjct: 61 DASPFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I V Y D + + + GL A QHE DH+ GILF D LS LK+ +I K+ + + + Sbjct: 121 IKVEYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGK 180 >gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 182 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L+ RP+E + + L +NMLE MY+ +GIGLAA Q+ + +LVVI Sbjct: 1 MLLEIAQYGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVI 60 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D+ + ++ + EGCLS+ RA V R Sbjct: 61 DIPKEEESVTWLKVNGEDKELSDIMPLMFANPVLEPYGPMHPFHEGCLSVMKIRASVVRP 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 F+ + + + I +GLLA CLQHE DHLNGILF++ +S ++ + K+ +L Sbjct: 121 DFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179 >gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366] gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366] Length = 186 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P++ + DP+L++V PIE+ D+ LI NM E MY+ G+GLAA Q+G+ RL ++ Sbjct: 1 MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + K VFIN +I+ + + + EGCLSIPD R DV R I ++Y D + Sbjct: 61 DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G+ A +QHE DH+ G LF D LS L++ M+ K+ + + Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKLDAISKG 169 >gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18] gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18] Length = 171 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 108/170 (63%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L+ +M E MY G+GLAA QIGV R++VI Sbjct: 1 MVRKILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + +V INP+II ++ + +EGCLS+P + A+V+R A + V+ ++ + + Sbjct: 61 DVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170 +I AD LLA QHE+DHL+G+LFIDHLS LK+ + K+ + L + ++ Sbjct: 120 VVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALEEAKE 169 >gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae Length = 171 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 4 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 62 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + + QEGCLS+PDY ADV+R + V +D Sbjct: 63 VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 120 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169 >gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 161 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ DP+LR + + + ++ L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP+I+ S++ EGCLSIP A R+ V D + + Sbjct: 61 Y-----NVDGRIGHVVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GL+A LQHE+DHL+G +F+D L+ R + + Sbjct: 116 PVRLEGTGLMARALQHEVDHLDGKVFLDRLTGDARKAALRALR 158 >gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno] gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno] Length = 193 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I ++ LI NM + M G+GLAA Q+G+ RL V+ Sbjct: 1 MVLPIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVV 60 Query: 62 DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KI + D + EGCLSIP R DV R Sbjct: 61 DASPFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQ 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y+D + + Q + DGL A +QHE DH+ GILF D LS K+ +I K++ +++ + Sbjct: 121 ITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGK 180 >gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326] gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326] Length = 167 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + +E +S I LID+ML+ +Y +GIGLA+ Q+G +V Sbjct: 1 MTVLKILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL D+ P++ +NP++++ S + CLS+PDY A+V+R + V D + Sbjct: 60 IIDLSDNRDE--PLILVNPEVVSGSHKALGQEG-CLSVPDYYAEVERYTSVVVSAQDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL G LFID+LS LKR M KK+ K ++ R Sbjct: 117 NSITIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166 >gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R ++P+ + ++ L+D+M + M + +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP + S+ EGCLS+P R V R + + + Sbjct: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D N + +G A +QHE DHL GIL+ + +R Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRR 161 >gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 170 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 101/162 (62%), Gaps = 3/162 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++I+P+ L+ V P+ ++N + +IDNM + MY GIGLAA Q+ +L R++ Sbjct: 1 MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + + I S+ + +EGCLSIP +RA V R +TV+ +D + + Sbjct: 61 IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + ADGLLA C+QHE+DHLNGILF+D+LS LKR I +K+ Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159 >gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000] Length = 184 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 76/162 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L R + ++ L+D++ MY G+GLAA Q+G R+ V D Sbjct: 16 VRPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYD 75 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+ + EGCLS+P A +R V + Sbjct: 76 CPDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPV 135 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G A CLQHE DHL+G ++ D L+ + + ++ + Sbjct: 136 TVHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADR 177 >gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b] gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b] Length = 165 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+E I ++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MAVRRCLPWPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R + NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VDASE--TRGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + GL AT +QH++D L G LF+D LS++KRDM+ +K KL Sbjct: 119 MEERDFVGLWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164 >gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 173 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 5/172 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML+ MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + + I ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSEERNEPQ---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + D LA LQHE+DHL GILFID+LS LKR M KK+ K +++++ Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169 >gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 169 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I + + L +MLE M G+GLAA QIGV R+ Sbjct: 1 MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H INP+ ++ + EGCLSIP +R + + +R D + Sbjct: 60 VFDCSHFQHGLRGAVINPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A GL+A C+QHE DHL+G+LF+ LS R K + Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLSDELRKESMKTIR 162 >gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565] gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565] Length = 184 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 171 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 1/169 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR ++P++++ + LIDNM+ MY + GIGLAA Q+ R++V Sbjct: 1 MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + S Y+EGCLS+P + ++ R I V Y+D + + Sbjct: 61 IDISEERDDPQ-VFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + +GLLA +QHE+DHL GIL +D++S +KR I +K+ K + + Sbjct: 120 KQTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKEK 168 >gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216] Length = 181 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V+F P+LR R I ++ LI++M + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIV 60 Query: 62 DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D FINP+I S++ +Y+EGCLS+P V+RS I +RY+D Sbjct: 61 DCTPWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + GL A +QHE DHL G++F D LS L+R++I K+ L + R Sbjct: 121 ENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173 >gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21] gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21] Length = 177 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ ++ Sbjct: 1 MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFIV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + INP I +D+ V EGCLS+PD+ +V+R IT++Y + Sbjct: 61 NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ K + + Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKKQRKSK 171 >gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 167 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L +V++ +E+IN L+ +M E MY+ GIGLAA Q+ RL+V Sbjct: 1 MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + S +EGCLS+P V R+ F+TV +D + + Sbjct: 61 IDVSETHDDL---KVFINPELVDSMGDKENEEGCLSVPGIYEKVTRAEFVTVNALDEHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+GLLA C+QHE+DHL G +F++ LS LK+ I K+ K + Sbjct: 118 PFTLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQRRE 165 >gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489] Length = 169 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 53/168 (31%), Positives = 98/168 (58%), Gaps = 2/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+P+LR++S+PIE + + L+D M E M + +G+G++A+Q+ R ++I Sbjct: 1 MMLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 L D ++ + + ++ EGCLS+P++ +VKR + + + Y + Sbjct: 61 CLPDEEGNQHKENLLEIINPEIIEKNGEILFNEGCLSVPEFYEEVKRYSSLKIHYQNRYG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ + A+ LA LQHE+DHLNGILFID LS +KR K++ + + Sbjct: 121 ENLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRK 168 >gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake] gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 14/181 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PD L S + +++ + L+D+M E M+ G+GLAAVQ+G+ R++V Sbjct: 1 MSVLPIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLV 60 Query: 61 IDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 +D+ + P INPKI+ S + +EGCLS+PDY V R Sbjct: 61 VDVPEEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++TV+Y+D N II A G LA CL+HE+DHLNGI+F+ +LS+ KRD K+ K+ Sbjct: 121 PQYVTVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKMR 180 Query: 167 Q 167 + Sbjct: 181 K 181 >gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131] gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131] Length = 163 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245] gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245] Length = 185 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ I+ D +LR+ + P+E ++ ++ L+ NM E MYS GIGLAA Q+G RL+V Sbjct: 1 MIVPINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVL 60 Query: 61 -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I PMV INP+I+ S+ +EGCLS+P + DV R + I++ Y D + Sbjct: 61 DISCMREYANVKPMVVINPEIVAVKGYRSM-EEGCLSLPGLQGDVVRPSSISLNYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q GLLA LQHE+DHL+G LF+D L + +R + K++ L R Sbjct: 120 EGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169 >gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823] gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823] Length = 198 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 14/181 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++ + I+ ++ LI++M E MY G+GLAA QI RL V+ Sbjct: 1 MILPIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVV 60 Query: 62 DLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 D VFINP I + + + EGCLSIP R +V R Sbjct: 61 DGSPFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRK 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I + Y D N Q + DG A +QHE DH+ G+LF DHLS LKR +++K++ + Q Sbjct: 121 EKIRITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180 Query: 168 L 168 Sbjct: 181 G 181 >gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 181 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR+ + + + ++ L+ ++ + M + G GLAA Q+GV R+ Sbjct: 1 MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D ++ S++ EGCLS P AD +RS + + D + + Sbjct: 61 YHADDEIGHLV------NPVLDLSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A +QHE DHL+G+LFID L + +R + K + + Sbjct: 115 PITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVRE 158 >gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101] gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101] Length = 196 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V I ++ I NM E MY+ G+GLAA Q+G+ R+ VI Sbjct: 1 MILPIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN KI+ + + EGCLSIPD R DV R Sbjct: 61 DTTPFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y + + + DGL+A +QHE DH+ G+LF D +S LK+ +I KK+ + + + Sbjct: 121 VTIEYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITEGK 180 >gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712] Length = 187 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 80/162 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L P+ ++ L+++M MY+ +G+GLAA Q+GV R+ V D Sbjct: 13 VRAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 73 CPDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G ++ DH++ +R + + + K Sbjct: 133 RVEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174 >gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95] gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95] Length = 178 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + DP+LR+ ++ +E + ++ +++D M MY DG+GLAA Q+G+ R ++D + Sbjct: 2 EIRLIGDPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSR 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + +V II F + ++EGCLSIPD DV R + VRY D + Sbjct: 62 EENEKGKKVVINPE-IIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEE 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G A QHE DHL GILF D L +K+ + K++++L++ Sbjct: 121 ELHGYQARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163 >gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans 621H] Length = 184 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P++I P P+LR V+R + + I + M MY GIGLAA Q+G+ R ++D+ Sbjct: 17 PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + PM+ INP+II+ SD + +EGCLS+P+ A+V R I VRY + + Sbjct: 77 AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K +LR Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182 >gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365] gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365] Length = 175 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V++PD LR+ +R +E+++ + +L N+++ MYS +G+G+AAVQIG ++ + Sbjct: 1 MAVLPIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFI 60 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ P+ FINP+++ S+D +EGCLS P V R A VR + + Sbjct: 61 VEPALAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGID 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + + A+GL A CL HE DHL G L +D + LKR MI +K+++ Sbjct: 121 GEIFEVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNRQ 167 >gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 162 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR PI I+ + +L++++LE + GLAA QIGV R Sbjct: 1 MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D V + D++ EGCLS+P R+ + V D + + Sbjct: 61 WNIDDEIG----YVLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++ L+A CLQHE+DHL+G+L++D L R R + + + Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIREQ 161 >gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c] gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c] Length = 205 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 17/180 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + + L+D+M+E MY+ G+GLAA Q+GV RL V Sbjct: 1 MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60 Query: 61 IDLQDHAHRKNPM-----------------VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 D +R + + ++ QEGCLSIP Sbjct: 61 FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANPVLELGPGEQNDQEGCLSIPGLHYA 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R+A TVR +D GLLA CLQHE DHL G L++D L+ L R + + Sbjct: 121 TARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRALR 180 >gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482] gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14] gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482] gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6] gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14] Length = 184 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP II + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLKGK 173 >gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546] gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546] Length = 167 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ ++S + LID+ML+ +Y + +GIGLAA+Q+G +V Sbjct: 1 MAVLDILTAPDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL ++ P++ +NP++++ SD + CLS+PDY ADV+R + V +D Sbjct: 60 IIDLSENRDE--PLILVNPEVVSGSDKAMGQEG-CLSVPDYYADVERFTSVVVSALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D LA +QHE+DHL+G LFID+LS LKR M KK+ K ++ Sbjct: 117 NQITLESDDFLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164 >gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 184 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V++ PILR++S I ++ I ++ + M DG+GLAA Q+G R+ V+ Sbjct: 1 MFLPIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D D + FIN I+ D EGC+SIP DVKR I + YMD Sbjct: 61 DANAFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q G+ A +QHE DHL GILF DHLS LK+ ++ K++ + + Sbjct: 121 EQGQEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNISTGK 173 >gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633] gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466] gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034] gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037] gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030] gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329] Length = 168 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + P++ +NP++++ + + CLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68] gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227] Length = 164 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 3/163 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 2 LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + + + + +EGCLSIP+ RA V R+ + +R +D + + + A Sbjct: 62 RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 119 DGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2] gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2] Length = 174 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P +L + + +E I+ ++ L+++M E M+ G+GLAA Q+G R++V Sbjct: 1 MALLEIYQYPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIV 60 Query: 61 IDLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + Q + N INP+II S E CLS+PDY +VKR +TVR + Sbjct: 61 YNPQAGSSNANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A GLLA +QHE+DHL+GIL+ID +S LKR+M KK+ K Sbjct: 121 NLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169 >gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2] gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2] Length = 168 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR V+ P+ + + NL+ ++L+ + + GIG+ A IG+ R+VV Sbjct: 1 MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +INP+I+ S + + EG +S+P +V+R A + VRY D + Sbjct: 61 LELSAEDGVRA---YINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C QHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161 >gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122] Length = 171 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M P++ PDP L+ + + + + + ID+ML+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLPILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + + + + + QEGCLS+PDY ADV+R + V+ D Sbjct: 60 VIDLSEARDQPL---ILVNPKVVCGKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D LA +QHE+DHL+G LFID+LS LKR M KK+ K ++ Sbjct: 117 NAIKVESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKKHIK 164 >gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 193 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V++ +P+L R + P+ + ++ L+ +M E + +++G+GLAA QIGV ++ V Sbjct: 1 MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60 Query: 61 IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D ++ T + D S EGCLS+P +KR+ +TV Sbjct: 61 YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N Q + +G A +QHE DHL+G L++D L K+ K Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKK 170 >gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 162 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+LR I I+ + L+D+++E + GLAA QIGV R Sbjct: 1 MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D V + D + EGCLS+P R+ + V D + Sbjct: 61 WNIDDEVG----YVLNPRIVELSEDTYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDLDGA 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ L+A CLQHE+DHL+G+L+ID L R R + + Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVRKKAMRAIR 159 >gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 171 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 110/168 (65%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L +V++P+ ++++ I ++ +M + MY G+GLAA Q+ + R+VV Sbjct: 1 MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + VFINP+I+ S + ++EGCLS+P++ +V+R A I V+ ++ + Sbjct: 61 IDVSDDQNELM--VFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA CLQHELDHL G +F+++LS LK+ I++KM K ++ Sbjct: 119 EFELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166 >gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 215 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI DP+LR+ + + + + ++ L+ +M + M ++G+GLAA QIGV R+ V Sbjct: 1 MIHPIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVF 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-------------CLSIPDYRADVKRSA 108 D D ++ +V +I + CLS P + KR Sbjct: 61 DAPDEDEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHY 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V D + + +I +G A LQHE DHL+G+L++D L + Sbjct: 121 AVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRLKGRDKAEAR 171 >gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18] gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18] Length = 168 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 102/168 (60%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M KP+V +PDPIL++V P++ I+ +I L++++++ M++ +G+AA Q+GV R+ Sbjct: 1 MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VID+ + H K + I +V +EGC+S+PDY DV+R+ +T+R+ + Sbjct: 61 VIDVSKNRHGKENNHGLLLMINPEILAKSGAAVMREGCMSVPDYTGDVERATELTLRFTE 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 121 PDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa] Length = 258 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 92/169 (54%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +PDPILR ++ I+ + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V Sbjct: 65 APLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + D + +V +NP++ +S ++ EGCLS P ADVKR + + D N Sbjct: 125 NPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGAR 184 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D ++ D I + L + + Sbjct: 185 FTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYE 233 >gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233] gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233] Length = 190 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+VI +P+L R +RP+ + ++ LI +M E + G GLAA QIG RL Sbjct: 1 MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60 Query: 60 VIDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + D D R+ + I T D EGCLS+P R+ + V+ Sbjct: 61 IYDCPDQGSRRRGYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + + G A CLQHE DHL+G L+ID L + K + + Sbjct: 121 DSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRE 169 >gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 172 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VI Sbjct: 1 MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+ I ++ + +EGCLS+P + A+V+R A I V+ ++ + Sbjct: 61 DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162 >gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511] Length = 177 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +V++PD L+ +S+P+E+ + ++ L+D+M E M + +G+GLAA+Q+ V R ++I Sbjct: 1 MIRDIVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALII 60 Query: 62 DLQDHAHRKNPMVFIN--------PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ ++P V +I ++ + YQEGCLS+P Y +V+R + + Sbjct: 61 NVPVDTDSEDPRVQQPKENTLEVINPVILDAEGKTRYQEGCLSVPGYFEEVERYKAVRIE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D + I+ D LA +QHE+DHL G LFI+ LS LKR K+ K ++ + Sbjct: 121 YQDRYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKKRLRGK 176 >gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21] gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21] Length = 172 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PDP L++ S P+ I L +M E MY G+GLAA QIGV R++VI Sbjct: 1 MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ +V INP+ I ++ + +EGCLS+P + A+V+R A I V+ ++ + + Sbjct: 61 DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LL+ QHE+DHL+G+LFIDHLS LK+ + K+ + Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162 >gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 188 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD L S +EK++ I L+D+M E M++ G+GLAAVQ+GV R++V Sbjct: 1 MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60 Query: 61 IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 +++ + P INPKI+ S + +EGCLS+P Y Sbjct: 61 MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + R I V+Y+D N II A G LA CLQHE+DHLNG +F+ +LS+ KRD +K+ Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 180 Query: 164 KLVQ 167 K + Sbjct: 181 KKER 184 >gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia alni ACN14a] gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia alni ACN14a] Length = 224 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 4/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +P+L R R I + ++ LID+M MY +G+GLAA QI V L V Sbjct: 40 TIRRITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFV 99 Query: 61 IDLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D ++ NP++ +EGCLS+P +V R VR D Sbjct: 100 YDCTDEDGVRHVGHLANPELEESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDA 159 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DHL G L++D LS R K+M + + Sbjct: 160 TGAPLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAEE 210 >gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52] gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395] gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33] gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2] gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33] gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9] gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385] gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757] gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80] gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52] gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457] gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33] gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395] gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39] gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2] gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2] gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395] gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)] gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9] gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33] gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286] gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236] gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10] gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385] gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 210 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Sbjct: 36 LPITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDC 95 Query: 64 QDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 QD ++ V NPK+ EGCLS+P A R+ + V D + Sbjct: 96 QDDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGN 155 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 156 AIKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185] Length = 184 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L + +INP I+ + +EGCLS+P VKR I V+YMD Sbjct: 61 TLDPLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 EDFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLKGK 173 >gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126] gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126] Length = 185 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 4/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L+ + I+K D+ L+D+M E MY+ +G+GLAA QIG RL VI Sbjct: 1 MIYPIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVI 60 Query: 62 D----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D + K FINP+I+ + ++EGCLSIP+ R DV R I ++Y D Sbjct: 61 DTDPIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N DG +A +QHE DH+ GILF DH+S K+ ++ K++ + + + Sbjct: 121 NWNEHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172 >gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252] gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252] Length = 189 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 9/159 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DPILR ++P+ + ++ L+D+M+E M++ GIGLAA Q+G R+ V+ Sbjct: 1 MVLPIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVV 60 Query: 62 DLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL PM FINP+I+ S++ ++EGCLSIPD R V+R + + Sbjct: 61 DLTPMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRI 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 RY+D + Q + A G+LA +QHE DHL GILFID +S Sbjct: 121 RYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRIS 159 >gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016] gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++LE +Y +G+GLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL ++ + + + + QEGCLS+PDY ADV+R + V +D N Sbjct: 60 VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRNG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 117 KELRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O] gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6] gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++LE +Y +G+GLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL ++ + + + + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K +LR Sbjct: 117 KPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166 >gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 169 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 1/162 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDP L + P+ + D+ LI NMLE MY G GLAA Q+GVL RL V Sbjct: 1 MSLLPIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +NP+V +NP I+ + + + +EGCLSIPD V R I VR+ D Sbjct: 60 MDVDWKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 DG A C+QHE DHL+G + DHLS R + Sbjct: 120 VNEQCFDGFAARCIQHEYDHLDGRVTFDHLSPEMRRTAQQHY 161 >gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226] gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + ++ + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSDNRDQPL---VLINPKVVSGNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T] Length = 164 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 3/163 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 2 LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + + + + +EGCLSIP+ RA V R+ + +R +D + + + A Sbjct: 62 RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +GLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 119 EGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161 >gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299] Length = 170 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ + K + ++ L+D+M E M + G+GLAA+Q+ V +++I Sbjct: 1 MVREVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLII 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + D + I IT D V+ EGCLS+P + DVKR+ I V Y D Sbjct: 61 LIPDENDIQAKDSLIEAINPKITHKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +Q + + LA QHE+DHL G LFI+ LS +KR K+ K + + Sbjct: 121 NNQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKKSQKSK 170 >gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVV Sbjct: 1 MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+Q +I I +E CLS+P V+R+A++ VR + Sbjct: 61 IDVQPKEDSFQKRAWIELVNPEIVARSGVQREREACLSLPGLSGVVERAAYVRVRAQNRY 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + I LLA CLQHE+DHL+GILF D+L + + Sbjct: 121 GEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEEIER 159 >gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B] gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + + S + LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + P++ +NP++++ + + CLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166 >gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3] gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25] gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25] gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25] gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + + S + LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + P++ +NP++++ + + CLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPMTIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana] Length = 273 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 81 LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NPKI +SD + EGCLS P A+V R + + D + Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247 >gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide deformylase [Arabidopsis thaliana] gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2; Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana] gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana] gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana] gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana] gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana] Length = 273 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 81 LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NPKI +SD + EGCLS P A+V R + + D + Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247 >gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 158 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDPILR + + K NS++ L+D+M + MY DG+GLAA Q+G+ R++V Sbjct: 1 MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + INP+II + Y EGCLSIP + DV+R +I +R D N Sbjct: 61 MDCGDG-----LIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + AD LL+ C QHE+DHLNG+LFID ++ + Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFIDVADKVYK 150 >gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 169 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 94/168 (55%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ FP P+L+ ++ ++ I+ D+ +++ +M E MY +G+GLAA QIG+ ++VI Sbjct: 1 MVREIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + ++ Y+EGCLS P +V R + + V+ +D N + Sbjct: 61 DTSKKEDSPLLKAVMINPELLEAEGEVKYKEGCLSFPGLSVEVSRYSKVKVKALDINGEE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++ +G A QHE+DHL GI FID ++ +KR + K +KL + + Sbjct: 121 KLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKLQKEK 168 >gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043] gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043] Length = 215 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI +P+L R + + + + ++ L+ +M E + +G+GLAA QIGV R+ + Sbjct: 1 MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115 + + INP + T EGCLS+P +KR+ V + Sbjct: 61 WKMDNEDGVPARGHIINPTVRTSRIPQERPDPREETEGCLSVPGESFPLKRAERAHVVGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D A G A C+QHE DHLNG L++D L + K + + Sbjct: 121 DLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLDDRQAKKARKAVKR 169 >gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586] gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586] Length = 168 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSDNRDEPM---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21] gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21] Length = 168 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLCIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14] Length = 171 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ I + LID+MLE +Y + +GIGLA+VQ+G +V Sbjct: 1 MAVLEILTAPDPRLKITAEKVQDI-ESVQKLIDDMLETLYSTDNGIGLASVQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL D+ R P++ INP++++ S+ + CLS+PDY A+V+R + V +D Sbjct: 60 IIDLSDN--RDQPLILINPEVVSGSNKALGQEG-CLSVPDYYAEVERYTSVVVSALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I +D LA +QHE+DHL+G LFID++S LKR M KK+ K V+ Sbjct: 117 QRITIESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164 >gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155] gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155] Length = 197 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + F +P+LR+V+ PI +IN +I L++ M++ MY +GIGLAA Q+G R+ VID Sbjct: 7 ILDVKKFGNPVLRKVAEPISEINDEIRELVEEMVDTMYEENGIGLAAPQVGRSLRVFVID 66 Query: 63 LQDHA-----------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 K P+ INP+II+ S + ++EGCLSIP A V R + I Sbjct: 67 THFEDETYGSDGEKLLCPKMPLALINPEIISTSGEDISFEEGCLSIPQINAAVVRPSNIV 126 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ + GL + C+QHE+DHL+G+LF D + ++ KK+ +L Sbjct: 127 LKAQTLEGEIIEADFGGLTSRCMQHEIDHLDGVLFTDKAEKDDLKLVAKKLEQLR 181 >gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana] Length = 273 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 81 LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NPKI +SD + EGCLS P A+V R + + D + Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 201 ISLSSLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247 >gi|269468439|gb|EEZ80104.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 185 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 18/184 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PDP LR ++ ++ +N L+ NM E MY+ DGIGLAA QI ++VV+ Sbjct: 1 MILPILHYPDPRLRTKAKEVDAVNDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVM 60 Query: 62 DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 D+ D + ++ + IT + EGCLS+P ++A+ Sbjct: 61 DVPDSQDDYELLLKNRKNDSDKETNIQHHPLCFINPKITTISGHEKHIEGCLSVPGFQAE 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V+RS IT+ ++ + ++A LLA C+QHELDHL GILF+D+LS+LK+ + +K Sbjct: 121 VERSNQITIEALNEQGESFTLHASNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTK 180 Query: 164 KLVQ 167 K+++ Sbjct: 181 KVIK 184 >gi|296270495|ref|YP_003653127.1| peptide deformylase [Thermobispora bispora DSM 43833] gi|296093282|gb|ADG89234.1| peptide deformylase [Thermobispora bispora DSM 43833] Length = 162 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 1/156 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 + DP+LR + P+ + + ++ LID M +VMY+ DG+GLA QIGV R+ V D+ Sbjct: 3 EIRHIGDPVLRTPAEPVTEFDRELRRLIDEMFQVMYAADGVGLAGPQIGVGKRVFVYDIV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 H NP + I+ +++ + + A R+A +T+R D + Sbjct: 63 NRKGHVVNPELTIDDPEQIVAEEGCLSVPSKETGKPLYAPTPRAAGVTLRGFDRLGRPIT 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A G+LA C QHE DHLNG L++D L + +R I Sbjct: 123 VKARGMLARCFQHEFDHLNGTLYVDRLPKEERRRIL 158 >gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 185 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++I PD LR +R + + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 14 EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +K PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + Sbjct: 74 APD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ + Sbjct: 133 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 178 >gi|257464084|ref|ZP_05628468.1| polypeptide deformylase [Fusobacterium sp. D12] gi|317061604|ref|ZP_07926089.1| polypeptide deformylase [Fusobacterium sp. D12] gi|313687280|gb|EFS24115.1| polypeptide deformylase [Fusobacterium sp. D12] Length = 173 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 1/167 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + D +LR+++ +E++N +I ++ NM+E MY+ DG+GLAA Q+G+ R+ + Sbjct: 1 MIYEIKKYGDSVLRKIAEKVEEVNDEIREILRNMVETMYARDGVGLAAPQVGISLRMF-V 59 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 N INP I +++ +EGCLSIP V+R A + + Y + + Sbjct: 60 CDIGTPEESNVKKIINPLITPLTEETISVEEGCLSIPGIYKKVERIAKLKLEYQNEQGEF 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL LF+D +S + + MI KK+ L + Sbjct: 120 VEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166 >gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573] gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603] gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223] gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451] gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603] gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573] gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451] gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223] Length = 168 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ +Y + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + QEGCLS+PDY ADV+R + V +D + Sbjct: 60 VIDLSDNRDEPM---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I + LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLKIESSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|153836422|ref|ZP_01989089.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] gi|149750324|gb|EDM61069.1| peptide deformylase [Vibrio parahaemolyticus AQ3810] Length = 168 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + P++ +NP++++ + + CLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I +D LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 SPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166 >gi|305664803|ref|YP_003861090.1| peptide deformylase [Maribacter sp. HTCC2170] gi|88707925|gb|EAR00164.1| peptide deformylase [Maribacter sp. HTCC2170] Length = 196 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V + IEK + LI+NM E MY+ G+GLAA QIG+ RL ++ Sbjct: 1 MVLPIVAYGDPVLRKVGKEIEKNLPKLDELIENMWETMYNASGVGLAAPQIGLPVRLFLV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D VFIN K+ + + V+ EGCLSIP+ R DV R Sbjct: 61 DATPFAEDDELSEKERKDLDGFKKVFINAKMQEETGEDWVFNEGCLSIPEIREDVTRKDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + Q DG+LA +QHE DH+ GILF D LS LK+ ++ +++ + + + Sbjct: 121 ITITYFDENFKKQTENFDGILARIIQHEYDHIEGILFTDKLSSLKKRLLKGRLANISKGK 180 >gi|254486314|ref|ZP_05099519.1| peptide deformylase [Roseobacter sp. GAI101] gi|214043183|gb|EEB83821.1| peptide deformylase [Roseobacter sp. GAI101] Length = 159 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +VI+PD L +V +P+E I I LI +M + MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVIWPDARLTQVCQPVEGITPGITQLIADMFDTMYAAPGRGLAAPQVGRSERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ +NP+II S+ +EGCLSIP+ D++R+A +T+R+ D Sbjct: 61 FDAGWKDGAPTPVACVNPEIIDLSEGRLTGEEGCLSIPNTPMDIERAAQVTLRWTDPEG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 G A +QHE DHL+GI+ D + + + Sbjct: 120 THERTFTGAEAVIVQHEYDHLDGIVIYDRVEKDVKK 155 >gi|19552813|ref|NP_600815.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|62390483|ref|YP_225885.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032] gi|145295722|ref|YP_001138543.1| peptide deformylase [Corynebacterium glutamicum R] gi|25452910|sp|Q8NQ46|DEF1_CORGL RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21324370|dbj|BAB98994.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC 13032] gi|41325820|emb|CAF21609.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032] gi|140845642|dbj|BAF54641.1| hypothetical protein [Corynebacterium glutamicum R] Length = 169 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L + + + + LID+M + M G+GLAA Q+GV R V Sbjct: 1 MAVREVRLFGDPVLVSRADEVVDFDESLSTLIDDMFDTMEDAGGVGLAANQVGV-LRRVF 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H INP ++D +EGCLSIPD A+ R + + D + Sbjct: 60 VFDTSHQEGGLRGHVINPVWEPLTEDTQTGKEGCLSIPDVSAETTRYETVRLSGQDRDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 A+GLLA C+QHE DHL+G+LF+ L +R Sbjct: 120 PVGFVANGLLARCIQHETDHLDGVLFLKRLDPAERKAAM 158 >gi|227503564|ref|ZP_03933613.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227075600|gb|EEI13563.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 171 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I +S + L NML+ M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDSSLRTLAQNMLDTMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP +D V EGCLSIP AD R + V D + Sbjct: 61 YDCSP-IQAGLRGVLINPVWTPLGEDMQVGPEGCLSIPGISADTPRHNRVFVSGRDVEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GLLA C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163 >gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] gi|212672730|gb|EEB33213.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098] Length = 170 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P L+ P+ +I +I L +MLE MY G+GLAA Q+G R++V+ Sbjct: 1 MILDIVTYPAASLKEKCVPVTEITDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60 Query: 62 DLQDHAHRKNPMVFINPK-IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D K P V INP+ ++ S + +YRADV+R+ + +RYMD + + Sbjct: 61 DPAAQDEEKQPRVVINPELTLSEETVLSRQEGCLSVPLNYRADVQRAERVHLRYMDLDGK 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+G LFID + RL+R + ++ K ++ + Sbjct: 121 IVEEDLEGFAAIVIQHEADHLDGTLFIDRIGRLRRSLYDTRVKKWLKRK 169 >gi|302521840|ref|ZP_07274182.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302430735|gb|EFL02551.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 210 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+ + +P+L + + + ++ L+D+M + +G+GLAA Q+GV ++ V D Sbjct: 36 LPITVVGNPVLHKECADVTEFGPELTKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDC 95 Query: 64 QDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 QD ++ V NPK+ EGCLS+P A R+ + V D + Sbjct: 96 QDDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGN 155 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G L++D LS+ R K+M++ Sbjct: 156 AIKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199 >gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P +LR+ +R + + + +I M MY GIGLAA Q+G+ R ++D+ Sbjct: 14 PILVAPQAVLRQKTRLVRPEDMDGLRTIIPRMFAAMYQAPGIGLAAPQVGLGMRFAIVDV 73 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D +NP+V INP++I +D + +EGCLS+P+ A+V R + VRY D + Q Sbjct: 74 SDKDGPRNPIVLINPEVIAETDSMAAREEGCLSLPNQYAEVVRPEAVRVRYQDMEGKVQE 133 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + AD LLATCLQHE+DHL GILF+DHLS LKR+MI ++++K + + Sbjct: 134 LEADDLLATCLQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 179 >gi|257063703|ref|YP_003143375.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] gi|256791356|gb|ACV22026.1| peptide deformylase [Slackia heliotrinireducens DSM 20476] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 86/164 (52%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+V +PDP LR V P + + + L M MY+ +G GLAA Q+GV R++VID Sbjct: 6 LPVVTYPDPTLREVCVPCDPSDKSLKKLARQMANTMYANNGCGLAAPQVGVNKRIIVIDC 65 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +NP+ +NP+II + EGCLS P +++R + V+Y D N + I Sbjct: 66 DQDSGTRNPITLLNPEIIETRGPEELDGEGCLSCPGITVEIRRPTYAIVKYTDLNGEDWI 125 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I DGLL CLQHE+DHLNGI + R K Q Sbjct: 126 IEGDGLLGRCLQHEIDHLNGITLFESCDMNARIKALKDYKAAQQ 169 >gi|23010332|ref|ZP_00051057.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 164 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I I+ + +L+ +++E + GLAA QIGV R Sbjct: 4 MAMREIRTIPDPVLRTPCDEITTIDDRVRSLVADLVETVDHEGRAGLAANQIGVNLRAFS 63 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D +NP+I+ SDD+ EGCLS+PD +R+ + V D + Sbjct: 64 WNIDDEIG-----YVLNPRIVELSDDYQDGDEGCLSVPDLWYPTRRAWYARVVGTDLDGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ L+A CLQH+ DHL+G+L++D L R R +++ + Sbjct: 119 EVVVEGTELMARCLQHKCDHLDGMLYLDRLDRSVRKKAMRELRE 162 >gi|258511303|ref|YP_003184737.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478029|gb|ACV58348.1| peptide deformylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 167 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 85/159 (53%), Gaps = 2/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++ + + I L+D+M E MY DGIGLAA QIG+L RLVV Sbjct: 1 MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID+Q +I +E CLS+P V+R+A++ VR + Sbjct: 61 IDVQPKEDSFQKRAWIELVNPEILERSGVQREREACLSLPGLSGVVERAAYVRVRAQNRY 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + I LLA CLQHE+DHL+GILF D+L + + Sbjct: 121 GEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEEIER 159 >gi|260655752|ref|ZP_05861221.1| peptide deformylase [Jonquetella anthropi E3_33 E1] gi|260629368|gb|EEX47562.1| peptide deformylase [Jonquetella anthropi E3_33 E1] Length = 162 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++PDP+LR+ + P+ + + L+++M +M+ DG+GLAA QIG+ ++ V+ + Sbjct: 7 IRVYPDPVLRQPTEPVTVFDEALRRLLEDMAVIMHEADGVGLAAPQIGIAKKIAVVYDAE 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 H + + + S +EGCLS P VKR +TVR D + Q Sbjct: 67 TDHLYH----LINPEVIASSGGQTGEEGCLSFPGIFGQVKRPLKVTVRCQDGDGNLQEYT 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A G +A HE+DHLNG L ID+ S LKR+++ KKM Sbjct: 123 AQGFIARAFTHEIDHLNGRLLIDNFSPLKRNLVLKKM 159 >gi|295696040|ref|YP_003589278.1| peptide deformylase [Bacillus tusciae DSM 2912] gi|295411642|gb|ADG06134.1| peptide deformylase [Bacillus tusciae DSM 2912] Length = 155 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR ++P+ K+ +I LID+M + MY+ DGIGLAA Q+G+L R++V Sbjct: 1 MAIRIIRLQGDPILREKAKPVSKVTPNIQRLIDDMADTMYNADGIGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + + + EGCLSIP +ADV R+ + VR D N + Sbjct: 61 ADIGEGLLGLVNPEVV------LEEGEQTGPEGCLSIPGIQADVTRAHHVIVRAQDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+GLLA CL HE+DHL+GILF+D ++ Sbjct: 115 PLVVDAEGLLARCLLHEIDHLDGILFLDRVTD 146 >gi|300780403|ref|ZP_07090259.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300534513|gb|EFK55572.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 200 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+VI DP+L + P+ + +++ LI +M E M + +G+GLAA QIGV RL V Sbjct: 12 MIRPIVIHGDPVLHTPTEPVTEPVAELKELIADMHETMDAANGVGLAANQIGVNKRLFVY 71 Query: 62 DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + NP++ + T D EGCLS+P R+ + V +D Sbjct: 72 HCPDGDTMRRGTVINPVLETSDIPKTMPKDDGEDDEGCLSVPGESFPTARAEWAKVTGLD 131 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 N + G A CLQHE+ HL+G +++D L+ + + + Sbjct: 132 ENGDPVEVEGTGFFARCLQHEVGHLDGYVYLDVLTGRYKREAKRAVK 178 >gi|288801322|ref|ZP_06406776.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] gi|288331705|gb|EFC70189.1| peptide deformylase [Prevotella sp. oral taxon 299 str. F0039] Length = 187 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54 + P+ ++ P+LR+V++ I ++ LI NM E M + DGIGLAA QIG + Sbjct: 1 MILPIYVYGQPVLRKVAQDITPDYPELKELIANMFETMDNADGIGLAAPQIGRSIRLSVI 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ ++ + + + + + +EGCLSIP +V R I V++ Sbjct: 61 DLDVLSEYYPEYKGFRKAFINPHILEVDEESEMLTSEEGCLSIPGIHENVDRRTRIHVKW 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + +G LA +QHE DHL+G+LF D +S L++ ++ K++ + + + Sbjct: 121 MDEEFTEHDEWIEGYLARVMQHEFDHLDGVLFTDRISPLRKQLVKNKLTAMSKGK 175 >gi|89895440|ref|YP_518927.1| hypothetical protein DSY2694 [Desulfitobacterium hafniense Y51] gi|123091730|sp|Q24U09|DEF_DESHY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89334888|dbj|BAE84483.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 150 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 91/156 (58%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VV Sbjct: 1 MAIYQIVEIGSEVLREKAVPVKEITPNIEKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP II + + CLSIP V R+A + V ++ + Sbjct: 61 IDVGEG-----PIELINPVIIAKEGEDLDDEG-CLSIPGITGQVARAAKVKVEALNRQGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q+I +GLLA CLQHE+DHL GILF+D + +R Sbjct: 115 LQVIEGEGLLARCLQHEIDHLEGILFVDKAKKTQRR 150 >gi|220931832|ref|YP_002508740.1| peptide deformylase [Halothermothrix orenii H 168] gi|254767591|sp|B8CWS6|DEF_HALOH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219993142|gb|ACL69745.1| peptide deformylase [Halothermothrix orenii H 168] Length = 154 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++P+ +I ++LIDNM+E MY +G+GLAA Q+GV R++V Sbjct: 1 MPVLQIRKIGDPVLRSKAKPVTEITKKTLSLIDNMVETMYQAEGVGLAAPQVGVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + + I ++ + +EGCLS+P V R++ +TV+ ++ + Sbjct: 61 VDTGEGQGL----IELINPEIIETEGKDIMEEGCLSVPGQTGKVIRASKVTVKGLNRGGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+G LA QHE+DHLNGILFID + R+ +MI Sbjct: 117 EVRIRAEGFLARAFQHEIDHLNGILFIDKVVRIGEEMI 154 >gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 188 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 76/166 (45%), Positives = 108/166 (65%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++I PD LR +R + + D+ L+ M MY GIGLAA QIGV RLVV+DL Sbjct: 17 EILIVPDKRLRMKARRVVGADRDDVAELVPRMFAAMYRAPGIGLAAPQIGVSLRLVVMDL 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +K PMV INP+I S++ +EGCLS+P A+V R I+V + D + + + Sbjct: 77 APD-DQKQPMVMINPEITARSEELVSREEGCLSLPGQYAEVIRPGQISVAFEDEDGKKRT 135 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADGLLA C+QHE+DHL+G+LF+DHLS LKR+MI +K++K ++ + Sbjct: 136 IDADGLLAACIQHEIDHLDGVLFVDHLSALKRNMILRKLAKDLREK 181 >gi|78187332|ref|YP_375375.1| formylmethionine deformylase [Chlorobium luteolum DSM 273] gi|123730026|sp|Q3B2U9|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273] Length = 190 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 98/166 (59%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + D +L + ++P++ +++DI +LID+M E M + GIGLAA Q+G RL+V+ Sbjct: 1 MILPINTYSDEVLHQKAKPLKGVDADISSLIDSMFESMENASGIGLAAPQVGCSIRLLVL 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ ++ P + + + ++ +EGCLS+P + DV R + IT++Y D N Q Sbjct: 61 DVSCMKSYEDVPPMVVINPNVLAVRGKNLMEEGCLSVPGVQGDVLRPSEITLKYRDRNFQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+LA LQHE+DHLNG LF+D + + R I +++ + Sbjct: 121 EHTEEFSGMLARVLQHEIDHLNGTLFVDRMEKRDRRRIQQELDDIA 166 >gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076] Length = 171 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + P+V F DP+L R + + + + ++ +D+M E MY+ G+GLAA QIGV ++ V Sbjct: 1 MVYPIVKFGDPVLEREADTVTEFDTPELHKFLDDMFESMYAAKGVGLAAPQIGVSKKIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +V INPKI+ +EGCLSIP +R V+R+ +T+R + + Sbjct: 61 IDVSNGENADDKLVIINPKILKIDGKQEG-EEGCLSIPGFREQVRRARCVTIRAQNAKGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LLA HE DHL G L+I H+S LKRD++ +K+ KL + D Sbjct: 120 EFEKTGEDLLARAFLHETDHLYGRLYITHISALKRDLMKRKIKKLQRAGD 169 >gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46] gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46] Length = 167 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+L + + ++ + +LID+M + M G+GLAA Q+GVL R+ V Sbjct: 1 MAVREVRLFGDPVLLSKAETVTDFDATLSHLIDDMFDTMDEQQGVGLAANQVGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP+ D+ EGCLSIP V R A + V D + Sbjct: 61 YDCNGTRG-----HIVNPEWEAIGDETVHEIEGCLSIPGINGPVTRHARVRVTGQDRHGT 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 AD LLA C+QHE DHL+G+LF+ L +R + + + Sbjct: 116 PVSFEADDLLARCVQHESDHLDGVLFLKRLEGDERKTAMRSLREQ 160 >gi|172040657|ref|YP_001800371.1| peptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171851961|emb|CAQ04937.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 166 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M L F DP+LR + +E ++ + L+ +MLE M G+GLAA Q+GV R Sbjct: 1 MAVLSLRYFGDPVLRTPAAEVEADFSSDAALATLVADMLETMDHHGGVGLAANQVGVTKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D + INP + ++ EGCLSIP R +V+R+ + +R Sbjct: 61 VFVYDCESDRG-----HVINPTWESVGEETQTGPEGCLSIPGIRGEVQRAETVRLRGQTL 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + GLLA C+QHE DHL+G+LF+ HLS R + + Sbjct: 116 DGELVDMEVSGLLARCVQHETDHLDGVLFLKHLSPEDRKQAMADIRR 162 >gi|91225452|ref|ZP_01260574.1| peptide deformylase [Vibrio alginolyticus 12G01] gi|91189815|gb|EAS76088.1| peptide deformylase [Vibrio alginolyticus 12G01] Length = 168 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + + S I LID+MLE +Y+T +GIGLA+ Q+G +V Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + P++ +NP++++ + + CLS+P+Y ADV+R + V +D + Sbjct: 60 VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ + Sbjct: 117 NPITIESGEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166 >gi|126463293|ref|YP_001044407.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] gi|126104957|gb|ABN77635.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029] Length = 163 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L + P E + L +ML MY +G GLAA Q+G + RL V Sbjct: 1 MAILPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ ++ +EGCLSIP R V R+ I +R+ Sbjct: 60 MDTLWKEAPAAPQVFVNPQILWMAEARVEGREGCLSIPGARPLVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q G+ A C QHE+DHL+GI+ +D LS RD ++M Sbjct: 120 EQEALLTGIDAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162 >gi|297559276|ref|YP_003678250.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843724|gb|ADH65744.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 184 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V F DP+L + P+ + + L+D++LE + + GLAA QIGV R+ Sbjct: 1 MTMRPIVRFGDPVLVTPTTPVTRFDKHTRALVDDLLETVEAPGRAGLAANQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 INP+I S++ EGCLS+P R+ + V +D + Sbjct: 61 Y-----NVEGRIGYVINPRIAELSEEVQEGDEGCLSVPRLWYPATRAEYAVVTGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL+A CLQHE DHL+G+++I+ L R + + + Sbjct: 116 PVTVEGTGLMARCLQHETDHLDGMVYIERLDPQTRKRALRDIRR 159 >gi|257469368|ref|ZP_05633462.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|317063614|ref|ZP_07928099.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] gi|313689290|gb|EFS26125.1| polypeptide deformylase [Fusobacterium ulcerans ATCC 49185] Length = 173 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR + +E ++ +I ++ +M E MY G+GLAA QIG+ R++V+ Sbjct: 1 MIYEIKKYGDPVLREKTVEVETVDDNIREILQDMAETMYDKKGVGLAAPQIGISKRMLVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +NP I +++ ++EGCLSIP V+R A I V Y++ + Sbjct: 61 DWSGEGEALRK--VVNPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIRVDYLNEKGEK 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL +LF+D +S + + M+TKK+ L + Sbjct: 119 VTEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165 >gi|25028276|ref|NP_738330.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|259507334|ref|ZP_05750234.1| peptide deformylase [Corynebacterium efficiens YS-314] gi|39931152|sp|Q8FT51|DEF1_COREF RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314] gi|259165045|gb|EEW49599.1| peptide deformylase [Corynebacterium efficiens YS-314] Length = 169 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + IF DP+L + + + + LID+M + M G+GLAA Q+GV R V Sbjct: 1 MTVRDVRIFGDPVLTSRADEVVDFDESLATLIDDMFDTMEDAGGVGLAANQVGV-LRRVF 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H +NP ++ +EGCLSIPD A+ R + + D + Sbjct: 60 VFDCSHVDGGLRGHVVNPVWEPIGEETQTGKEGCLSIPDVSAETTRYETVKLSGQDRDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A GLL+ C+QHE DHL+G+LF+ L +R Sbjct: 120 PIGLVASGLLSRCIQHETDHLDGVLFLKRLDPAERKAAM 158 >gi|82523804|emb|CAI78547.1| polypeptide deformylase [uncultured Chloroflexi bacterium] Length = 176 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PDP+LRR +R + ++ LID+M+E M S G+GLAA Q+ ++++ Sbjct: 1 MSIREIVFTPDPVLRRKARKVTDFGPELQTLIDDMVETMRSAPGVGLAAPQVAESWQVIT 60 Query: 61 IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 I+ + + +NP+I S++ V EGCLS+P +V+R+ +T Sbjct: 61 IEYSEESEEGEEGEEKVPPKLYTLVNPQITRASNETIVGTEGCLSVPGIVGEVERNEAVT 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 V+ + Q I A LA QHE+DHL G+LF D L R Sbjct: 121 VKAQNRRGQPVTIKAQDWLARIFQHEIDHLEGVLFTDLTDELWR 164 >gi|300859237|ref|YP_003784220.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300686691|gb|ADK29613.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|302206928|gb|ADL11270.1| Peptide deformylase [Corynebacterium pseudotuberculosis C231] gi|302331492|gb|ADL21686.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis 1002] gi|308277182|gb|ADO27081.1| N-formylmethionyl-tRNA deformylase [Corynebacterium pseudotuberculosis I19] Length = 197 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + + + + ++ LI +M E M G+GLAA QIGV RL Sbjct: 1 MTVRPIVIHGDPVLHNPTAEVTEPIDSPELQELIADMYETMAVAHGVGLAANQIGVGKRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITV 112 V + D + INP + T ++ EGCLS+P R+ + V Sbjct: 61 FVFNCPDDQGHMHRGCVINPILETTEIPQTMPSDDGSDDEGCLSVPGEGFPTGRATWAKV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + G LA C QHE+ HL+G L+ D L + K + + Sbjct: 121 TGLDEHGNPVSYEGTGFLARCFQHEVGHLDGFLYTDTLVGRYKRQAKKAIKR 172 >gi|225021362|ref|ZP_03710554.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] gi|224945744|gb|EEG26953.1| hypothetical protein CORMATOL_01381 [Corynebacterium matruchotii ATCC 33806] Length = 169 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++M + M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMFDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCTTE-EDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I A GL+A C+QHE DHL+G+LF+ L+ +R Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAM 158 >gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H] gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain H] Length = 242 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + Sbjct: 66 LKIVLYPDPVLRKKCNEVVNFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISMRIIVWNA 125 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++N VFINP I+ S S EGCLS PD V R +++ Y D + Sbjct: 126 LYEKKKKENERVFINPSIVEPSLIRSKLVEGCLSFPDIEGKVDRPRVVSISYYDLDGNKH 185 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G+ A QHE DHL+GILFID S+ ++ + K++++++ Sbjct: 186 LKILKGIHARIFQHEYDHLDGILFIDRFSQSEKHKVRAKLNEMIR 230 >gi|296133300|ref|YP_003640547.1| peptide deformylase [Thermincola sp. JR] gi|296031878|gb|ADG82646.1| peptide deformylase [Thermincola potens JR] Length = 150 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DPIL+ RP+ KI +I+ L+D+M + MY +G+GLAA QIGV R++V Sbjct: 1 MAVYKIVEIGDPILKEKCRPVNKITPNIIKLLDDMADTMYDANGVGLAAPQIGVGKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D ++ + EGCLSIP + V R A + VR M+ Sbjct: 61 VDVGDGLIELVNPEIVHREGSETDV------EGCLSIPGIQGQVPRYAKVRVRGMNREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GLLA QHE+DHL GILFID + + Sbjct: 115 RVEYEAEGLLARAFQHEIDHLEGILFIDRAKEIIKK 150 >gi|288923166|ref|ZP_06417311.1| peptide deformylase [Frankia sp. EUN1f] gi|288345479|gb|EFC79863.1| peptide deformylase [Frankia sp. EUN1f] Length = 185 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ DP+LR + + ++ + L+DNM+E MY+ G+GLAA Q+GV ++ V Sbjct: 2 PIRTLGDPVLRTPAEAVTVFDAALRRLVDNMIETMYAAPGVGLAAPQVGVSLQVFVFDTE 61 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + ++ EGCLS+P + R+A TVR +D Sbjct: 62 YDPRDVAVPRRPLVVVNPVLETGPGEQHDDEGCLSVPGHAYPTTRAATATVRGVDATGAA 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 ADGLLA C QHE DHL+G L+ID L+ R Sbjct: 122 VRYEADGLLARCFQHETDHLHGRLYIDRLTGEDRRAA 158 >gi|296117966|ref|ZP_06836549.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295969197|gb|EFG82439.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 169 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + ++ DP+L + I + + + L ++MLE M G+GLAA QIG+L R+ Sbjct: 1 MTVKAIRLYGDPVLTTRAGEITEFDESLEKLAEDMLETMDDAGGVGLAANQIGLLKRIF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP D V EGCLSIPD +R ++V D + Sbjct: 60 VYDCSSVETGMRGAIINPVWEAVGDKTQVGNEGCLSIPDISMPTERFETVSVSGQDVHGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL+A C+QHE DHL+G+LF+ L R ++ Sbjct: 120 PVSMVVSGLMARCVQHETDHLDGVLFLQRLETDDRKQAMAQIRN 163 >gi|167630201|ref|YP_001680700.1| peptide deformylase [Heliobacterium modesticaldum Ice1] gi|238687984|sp|B0TGS8|DEF_HELMI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167592941|gb|ABZ84689.1| peptide deformylase [Heliobacterium modesticaldum Ice1] Length = 151 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ DP+LR ++P+ + NS++ LID+M + M + G+GLAA QIG+ R+ V Sbjct: 1 MAVYEILKMGDPVLREKAKPVTRFNSNLGRLIDDMFDTMAAARGVGLAAPQIGIGKRVCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ I + EGCLSIPDY VKR + V+ D + Sbjct: 61 VEVGKRRFELVNPEIIEAEGE------QCDAEGCLSIPDYTGRVKRFQRVRVKAQDRKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I LLA QHE+DHL+GILF+D + Sbjct: 115 TFIAEGTDLLAVAFQHEIDHLDGILFVDRVE 145 >gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 179 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 P+++ P ILR+ +RP+ ++ + + + M MY GIGLAA Q+G+ R I Sbjct: 14 PILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLR-FAIVD 72 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP +I SD + +EGCLS+P+ A+V R + VRY + + Sbjct: 73 LGEEGERQPLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEE 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K + + Sbjct: 133 LEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQK 178 >gi|126700204|ref|YP_001089101.1| peptide deformylase 2 [Clostridium difficile 630] gi|254976176|ref|ZP_05272648.1| peptide deformylase 2 [Clostridium difficile QCD-66c26] gi|255093565|ref|ZP_05323043.1| peptide deformylase 2 [Clostridium difficile CIP 107932] gi|255307617|ref|ZP_05351788.1| peptide deformylase 2 [Clostridium difficile ATCC 43255] gi|255315309|ref|ZP_05356892.1| peptide deformylase 2 [Clostridium difficile QCD-76w55] gi|255517977|ref|ZP_05385653.1| peptide deformylase 2 [Clostridium difficile QCD-97b34] gi|255651093|ref|ZP_05397995.1| peptide deformylase 2 [Clostridium difficile QCD-37x79] gi|260684158|ref|YP_003215443.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260687817|ref|YP_003218951.1| peptide deformylase 2 [Clostridium difficile R20291] gi|115251641|emb|CAJ69474.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2 ) [Clostridium difficile] gi|260210321|emb|CBA64646.1| peptide deformylase 2 [Clostridium difficile CD196] gi|260213834|emb|CBE05821.1| peptide deformylase 2 [Clostridium difficile R20291] Length = 146 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGEELIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|225010669|ref|ZP_03701139.1| peptide deformylase [Flavobacteria bacterium MS024-3C] gi|225005222|gb|EEG43174.1| peptide deformylase [Flavobacteria bacterium MS024-3C] Length = 196 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+L++V+ I + ++ +LI+NM E MY G+GLAA QIG+ RL VI Sbjct: 1 MILPIVAYGDPVLKKVANAIAADHPNLESLIENMWETMYHAHGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + VFIN I + + + EGCLSIPD R DV R Sbjct: 61 DATPFADDEDLTQSEQDALKNFKAVFINATITEETGEEWTFNEGCLSIPDVREDVIRKPK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D + DGL+A +QHE DH+ GILF D LS LK+ ++ ++S + + + Sbjct: 121 ITITYQDETFKTHTKTFDGLVARVIQHEYDHIEGILFTDKLSSLKKRILKGRLSNISKGK 180 >gi|255325044|ref|ZP_05366150.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|255297609|gb|EET76920.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] Length = 170 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M + G+GLAA Q+G+L R+ Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDNAGGVGLAANQVGILKRIF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H +NP + EGCLSIP A+ R + V D + Sbjct: 60 VYDCSHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163 >gi|86137256|ref|ZP_01055834.1| peptide deformylase [Roseobacter sp. MED193] gi|85826580|gb|EAQ46777.1| peptide deformylase [Roseobacter sp. MED193] Length = 165 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M+E M + G+GL A QIGV+ RL V Sbjct: 1 MTARTCLPWPDKRLRTAATEVSEITDEIRAIWTDMIETMEAMPGVGLGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+++ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VDGSRERGKAV--RMANPEVLHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG LF DHLS++KRDM+ KK KL Sbjct: 119 ITERDFVGIEATSVQHQIDHLNGKLFFDHLSKVKRDMLIKKSKKL 163 >gi|260591629|ref|ZP_05857087.1| peptide deformylase [Prevotella veroralis F0319] gi|260536429|gb|EEX19046.1| peptide deformylase [Prevotella veroralis F0319] Length = 186 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MVLPVYTYGQPVLRKVAEDIPLDYPDLQQLIQNMFETNTASDGVGLAAPQIGKSIRVVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + +EGCLS+P V R+ I V+Y+ Sbjct: 61 DLDVLSDTFPEYKGFRHAFINGHILEFDDSETETLEEGCLSLPGIHESVTRAKRIYVKYV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + +G LA +QHE DHL+G +F DHLS ++ MI K+ L+Q + Sbjct: 121 DENLVEHEEWIEGYLARVIQHEFDHLDGKVFTDHLSPFRKQMINSKLKALLQGK 174 >gi|329961281|ref|ZP_08299447.1| peptide deformylase [Bacteroides fluxus YIT 12057] gi|328531946|gb|EGF58763.1| peptide deformylase [Bacteroides fluxus YIT 12057] Length = 186 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA QIG+ R+V + Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIGNMFETMDNAEGVGLAAPQIGLPIRVVTV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ +IN I+ + + +EGCLS+P VKR I V+Y+D Sbjct: 61 NLDVLSEDLPEYKGFRKAYINAHILDVAGEEVSMEEGCLSLPGIHESVKRGDKIHVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL+G +FIDHLS L++ MI K++ L++ + Sbjct: 121 ENLEEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNALLKGK 173 >gi|15965155|ref|NP_385508.1| peptide deformylase [Sinorhizobium meliloti 1021] gi|307309167|ref|ZP_07588838.1| peptide deformylase [Sinorhizobium meliloti BL225C] gi|23396568|sp|Q92QD0|DEFL_RHIME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15074335|emb|CAC45981.1| Putative polypeptide deformylase [Sinorhizobium meliloti 1021] gi|306900313|gb|EFN30929.1| peptide deformylase [Sinorhizobium meliloti BL225C] Length = 172 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 97/167 (58%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFDGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ + P F+NP+I+ S + + + EG +S+P +V+R + V + + + Sbjct: 61 IEVDP---QTGPRSFVNPEIVWQSSETAWHTEGSVSMPGVAEEVERPVRVRVSFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K + Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNR 164 >gi|261252741|ref|ZP_05945314.1| peptide deformylase [Vibrio orientalis CIP 102891] gi|260936132|gb|EEX92121.1| peptide deformylase [Vibrio orientalis CIP 102891] Length = 167 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + ++ + S + LID+MLE +Y + +GIGLA+ Q+G +V Sbjct: 1 MAVLEILTAPDPRLKVKAEKVQDL-STVQTLIDDMLETLYATDNGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + R P++ +NP++++ SD + CLS+PDY ADV+R + V +D Sbjct: 60 IIDLSE--SRDEPLILVNPEVVSGSDKALGQEG-CLSVPDYYADVERFTSVVVSALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I +D LA +QHE+DHL+G LFID+LS LKR M KK+ K V+ Sbjct: 117 KPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKRKMAMKKVKKYVK 164 >gi|311898295|dbj|BAJ30703.1| putative polypeptide deformylase [Kitasatospora setae KM-6054] Length = 218 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L R R + + ++ LID+M + MY+ +G+GLAA QIGV ++ V Sbjct: 42 TARPITVVGNPVLHREVRTVTAFDGELSALIDDMFQSMYAAEGVGLAANQIGVDLKVFVY 101 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + QEGCLS+P ++ R + V D + Sbjct: 102 DCPDDEGVRHVGHVVNPVLEELPAGRRALDDSQEGCLSVPTAYQELARPDYAAVTGQDKD 161 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + G A CLQHE DHL G L+ID LS+ R ++M Sbjct: 162 GNPIRVEGTGFFARCLQHETDHLYGYLYIDRLSKRDRKDALRQM 205 >gi|255101749|ref|ZP_05330726.1| peptide deformylase 2 [Clostridium difficile QCD-63q42] Length = 146 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGEDLIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HE+DHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHEIDHLDGILFVDKIEK 146 >gi|288550484|ref|ZP_05970614.2| peptide deformylase [Enterobacter cancerogenus ATCC 35316] gi|288314935|gb|EFC53873.1| peptide deformylase [Enterobacter cancerogenus ATCC 35316] Length = 164 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 103/163 (63%), Gaps = 3/163 (1%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + PD LR V+ P++++N++I ++D+M + MY+ +GIGLAA Q+ + R++VID+ ++ Sbjct: 2 LHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIVIDVSEN 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + + + + +EGCLSIP+ RA V R+ + +R +D + + A Sbjct: 62 RDGRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGKPFELEA 118 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D LLA C+QHE+DHL G LFID+LS LK+ I +K+ KL ++R Sbjct: 119 DDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 161 >gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|23396549|sp|Q93LE9|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|59797588|sp|Q72S74|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans] gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601] gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 178 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 85/162 (52%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L + Sbjct: 1 MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60 Query: 58 LVVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ +D+ + +NP I + D S + EGCLS+P R V+R I + Sbjct: 61 IVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++MD DG A QHE DHL GIL++D L K Sbjct: 121 QWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 162 >gi|163744870|ref|ZP_02152230.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] gi|161381688|gb|EDQ06097.1| peptide deformylase, putative [Oceanibulbus indolifex HEL-45] Length = 165 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + V++PD LR + PIE + +I L D+M+E M + G+GLAA QIGV+ ++ V Sbjct: 1 MTLRRYVLWPDKRLRSPAEPIEAVTDEIRTLWDDMIETMDAMPGVGLAAPQIGVMLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +++ + NP II S Y+E ++P + A ++R + VR++D Sbjct: 61 VDASEARNKR--IRLANPVIIDASAVLHPYEEASPNLPGFSAVIRRPRGVKVRFLDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL A +QH++DHL G ++ D+LS+ KRDM+ +K KL Sbjct: 119 EVERDFVGLEAVSVQHQIDHLAGKMYFDNLSKTKRDMLLRKARKL 163 >gi|302206252|gb|ADL10594.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis C231] gi|302330810|gb|ADL21004.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis 1002] gi|308276494|gb|ADO26393.1| Peptide deformylase 1 [Corynebacterium pseudotuberculosis I19] Length = 169 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ Sbjct: 1 MTIRDIRFFGDPVLTTRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H INP +D + EGCLSIPD + D R + V D + Sbjct: 60 VYDCSHIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A GL++ C+QHE DHL+G+LF+ L + R Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAM 158 >gi|253583796|ref|ZP_04860994.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] gi|251834368|gb|EES62931.1| formylmethionine deformylase [Fusobacterium varium ATCC 27725] Length = 173 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+LR + +E ++ +I ++ NM+E MY G+GLAA Q+G+ R++V+ Sbjct: 1 MIYEIKKYGDPVLREKTVEVETVDDNIREILQNMVETMYDKKGVGLAAPQVGISKRMLVL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D INP I +++ ++EGCLSIP V+R A I V Y++ + Sbjct: 61 DWTGEGEELRK--VINPVITPLTEEKIDWEEGCLSIPGIYKKVERVAKIKVDYLNEKGEK 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G A +QHE DHL +LF+D +S + + M+TKK+ L + Sbjct: 119 ITEELEGFPAIVMQHEFDHLEAVLFVDRISPMAKRMVTKKLQALKKE 165 >gi|291456898|ref|ZP_06596288.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291382175|gb|EFE89693.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 161 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ I+ EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKVGYVL------NPILEEKSGEQYGDEGCLSVPGLWYKTRRAEYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R K M + + Sbjct: 115 EVVLEGTGIMGRMLQHECDHLDGHVYLDRLEKEERRAAMKYMREHQK 161 >gi|255008473|ref|ZP_05280599.1| peptide deformylase [Bacteroides fragilis 3_1_12] gi|313146202|ref|ZP_07808395.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] gi|313134969|gb|EFR52329.1| peptide deformylase(PDF) [Bacteroides fragilis 3_1_12] Length = 184 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQVAEDITPDYPNLKELIENMFETMDHADGVGLAAPQIGLPVRVVVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ +IN I D +EGCLS+P VKR + I VRYMD Sbjct: 61 NLDVLSEDYPEYKDFRKAYINAHIDVVEGDEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|305680739|ref|ZP_07403546.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|305658944|gb|EFM48444.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 169 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + IF DP+L + I + + +L+++ML+ M + G+GLAA QIGVL R+ V Sbjct: 1 MTSHDIRIFGDPVLTSRADEITAFDDSLKHLVEDMLDTMDAAGGVGLAANQIGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP+ ++ + EGCLSIP+ AD +R + V D + Sbjct: 61 FDCTTE-EDGMRGHIINPQWEPVGEETQLGPEGCLSIPEVLADTERYQTVRVTGYDYDGN 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I A GL+A C+QHE DHL+G+LF+ L+ +R Sbjct: 120 PLTITASGLMARCIQHETDHLDGVLFLRRLTPERRKEAM 158 >gi|322378951|ref|ZP_08053365.1| peptide deformylase [Helicobacter suis HS1] gi|322379805|ref|ZP_08054102.1| peptide deformylase [Helicobacter suis HS5] gi|321147773|gb|EFX42376.1| peptide deformylase [Helicobacter suis HS5] gi|321148627|gb|EFX43113.1| peptide deformylase [Helicobacter suis HS1] Length = 172 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV +PD LR +S +E ++ + L+++M E M + GIGLAA+Q+GV R+++ Sbjct: 2 MAILDLVHYPDKRLRGLSTEVEVFDTALHTLLEDMQETMLANKGIGLAAIQVGVAKRILI 61 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ P + T +++EGCLS+P++ +++R A + + Y D Sbjct: 62 INLPRQDEQQYPEDCLEIINPTLLHAEGQILWREGCLSVPEFYEEIQRFARVKLAYCDRY 121 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q + A LL+ +QHE+DHLNGILF+D LS LKR K+ K + Sbjct: 122 GDPQELQASDLLSVAIQHEIDHLNGILFVDRLSMLKRKKFEKEFRKNSK 170 >gi|146276207|ref|YP_001166366.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554448|gb|ABP69061.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++PD L+ + P++ + +I + D+M+E M + G GLA QIGV+ RL V+ Sbjct: 1 MIRPFVMYPDKRLKTAAAPVDAVTDEIHAIWDDMVETMDAMPGYGLAGPQIGVMLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D + NP+I+ S F ++EG ++P A + R +TVR+++ + Sbjct: 61 DCSDSRGKAI--RLANPEILHASGQFREHEEGSPNLPGATAVISRPRAVTVRFLNTAGEM 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + AT +QH++DHLNG L+IDHLS LKR M+ K K ++ Sbjct: 119 EERDFVDIWATSVQHQIDHLNGKLYIDHLSALKRKMVIAKSEKYLR 164 >gi|229522817|ref|ZP_04412231.1| peptide deformylase [Vibrio cholerae TM 11079-80] gi|229340034|gb|EEO05042.1| peptide deformylase [Vibrio cholerae TM 11079-80] Length = 168 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59 M ++ PDP LR S+ + + + + LID++L+ + +GIGLAA Q+G +V Sbjct: 1 MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLCATDNGIGLAAPQVGREEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D+ + + + + + QEGCLS+PDY ADV+R + V +D Sbjct: 60 VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I LA +QHE+DHL+G LFID+LS LK+ M KK+ K V+ R Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166 >gi|258593266|emb|CBE69605.1| Peptide deformylase (PDF) (Polypeptide deformylase) [NC10 bacterium 'Dutch sediment'] Length = 169 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++++P P++R+ S + IN ++ ID+M+E MY+ G+GLAA Q+G L R++V Sbjct: 1 MAKLSILLYPSPVIRKKSVSVTSINGELQRFIDDMVETMYAAPGMGLAAPQVGALKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D PM INP ++ + V +EGCL IPD V R + V+ D N + Sbjct: 61 LDPSDDRTSHRPMALINPVLVA-GEGQIVDEEGCLCIPDLNEPVSRFKQVVVKAYDRNEK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ LLA LQHE+DHL+GILFID LS Sbjct: 120 EIILEGADLLARILQHEIDHLDGILFIDRLS 150 >gi|227547872|ref|ZP_03977921.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227080057|gb|EEI18020.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 190 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L ++ +E+ +++ LI +M E M + G+GLAA Q+GV RL V Sbjct: 1 MTIRPIVIHGDPVLHEPTKAVEQPVAELQELIADMHETMDAAYGVGLAANQVGVPLRLFV 60 Query: 61 IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + NP++ + T D EGCLS+P R+++ V + Sbjct: 61 YHCPDGDRMRRGTVINPVLETSEVPKTMPSDDGDDDEGCLSVPGESWPTGRASWAKVTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D N ++ +G A CLQHE+ HL+G+++ D L+ + + Sbjct: 121 DENGDEVVVEGEGFFARCLQHEVGHLDGVVYTDVLTGRYKREAKR 165 >gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1] Length = 164 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 5/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P+LR S I+K + ++ + + +MY DG+GLAA Q+ VL R+ V D Sbjct: 3 IVYIGNPVLREKSEAIKKFDDNLKTFVKELTSIMYKEDGVGLAAPQVAVLKRMFVFD--- 59 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P V INP+I+ S + + +EGCLSIP ADV+R ++ +RY D + Sbjct: 60 --DGSGPKVIINPEILEKSKELVIMEEGCLSIPGVYADVERPEWVKMRYQDVDGNVHEEL 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G +QHE DHLNGILFID+LS K+ MI K+ ++++ + Sbjct: 118 FEGYAGRIVQHEYDHLNGILFIDYLSPAKKMMIRPKLREIMKGK 161 >gi|23335172|ref|ZP_00120410.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23466058|ref|NP_696661.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189439265|ref|YP_001954346.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213691939|ref|YP_002322525.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227547307|ref|ZP_03977356.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621368|ref|ZP_04664399.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296454248|ref|YP_003661391.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|317482866|ref|ZP_07941874.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|322689310|ref|YP_004209044.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691322|ref|YP_004220892.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|39931156|sp|Q8G487|DEF2_BIFLO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|23326783|gb|AAN25297.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189427700|gb|ACD97848.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|213523400|gb|ACJ52147.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|227212266|gb|EEI80162.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515829|gb|EEQ55696.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296183679|gb|ADH00561.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|316915711|gb|EFV37125.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|320456178|dbj|BAJ66800.1| polypeptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320458046|dbj|BAJ68667.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320460646|dbj|BAJ71266.1| polypeptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 162 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRNRQ 160 >gi|319788404|ref|YP_004147879.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] gi|317466916|gb|ADV28648.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 1/171 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ DP+LR+ S IE I+ + +L+ +MLE M DG GLAAVQIG L R++V Sbjct: 1 MAIRPILPITDPLLRQKSAEIETIDDSVRDLVSDMLETMQDADGAGLAAVQIGELRRILV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119 D+ + VFINP+II SD+ + CLS+P+ V R+ + VR+ D +A Sbjct: 61 ADIPLDEPHASHKVFINPEIIWQSDEIQELEGEGCLSMPEIYFTVPRALEVKVRFTDLDA 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 ++A+G A C QHE+DHLNGI IDH+S LKRD K K +++ + Sbjct: 121 VTHEVHAEGFSAVCFQHEIDHLNGIRQIDHVSSLKRDKFLAKFRKYLRIDE 171 >gi|308235005|ref|ZP_07665742.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114690|ref|YP_003985911.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310946184|gb|ADP38888.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 162 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR PI +I + NL++++LE + GL+A QIG+ R Sbjct: 1 MTIRQIRIVPDPVLRTPCDPIREITPAVRNLVEDLLETVNDPGRAGLSANQIGISLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ H +I EGCLS+P +R+ + + +D + + Sbjct: 61 YNIEGHIGYIL------NPVIEELSGEQYGDEGCLSVPRLWYKTRRADYARAKGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL+A +QHE DHL+G +++D L + R +++ Sbjct: 115 TIVLEGKGLMARMIQHECDHLDGHVYLDRLEKDVRKQALRQLRN 158 >gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO] gi|167012066|sp|A8F524|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO] Length = 171 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K + + DP+LR+ S+ +E+++ ++LI ++ E MY+TDGIGLAA QIGV R+ V+ Sbjct: 1 MVKKIRLLGDPVLRKKSKNVERVDETTISLIKDLFETMYATDGIGLAAPQIGVSLRIFVM 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P VFINP+II S++ + +EGCLS+P+ DV+RS +TVRYM+ + + Sbjct: 61 DDGK------PRVFINPEIIYKSEEKEIAEEGCLSVPEVFEDVERSKEVTVRYMNEHGEE 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A +QHE DHL G+LFID + +R I KK+ ++V+ Sbjct: 115 VEESFVDYSARVVQHEYDHLQGVLFIDLIPSSRRFAIRKKLIEIVRQ 161 >gi|256832744|ref|YP_003161471.1| peptide deformylase [Jonesia denitrificans DSM 20603] gi|256686275|gb|ACV09168.1| peptide deformylase [Jonesia denitrificans DSM 20603] Length = 162 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAMREIRVVPDPVLRTKCDEITHIDDRVKGLVEDLLETVDMEGRAGLAANQIGVNLRAFA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ D V + + + EGCLS+P +R + V +D + + Sbjct: 61 YNIDDDLG----YVINPRIVELSEESYQDGDEGCLSVPGLWYPTRRHMYARVEGIDLDGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + L+ CLQHE+DHL+G+L++D L R R +++ Sbjct: 117 PLTVEGTDLMGRCLQHEVDHLDGLLYLDRLERSVRRRAMQELR 159 >gi|283783275|ref|YP_003374029.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|297243498|ref|ZP_06927430.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|283441016|gb|ADB13482.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|296888543|gb|EFH27283.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] Length = 162 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +I EGCLS+P +R+ + R +D + + Sbjct: 61 YNINGRIGYIL------NPVIEELKGEQYDDEGCLSVPGLWYKTRRANYARARGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ +GL+A +QHE DHL+G +++D L + R +++ ++ Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMR 161 >gi|150025801|ref|YP_001296627.1| peptide deformylase [Flavobacterium psychrophilum JIP02/86] gi|158513727|sp|A6H0E7|DEF_FLAPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149772342|emb|CAL43820.1| Peptide deformylase [Flavobacterium psychrophilum JIP02/86] Length = 194 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR+V I K ++ I NM E MY+ G+GLAA Q+G+ RL ++ Sbjct: 1 MILPIVGYGDPVLRKVCEEITKDYINLEETIANMYETMYNACGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + FIN K++ + + EGCLSIPD R DV R+ Sbjct: 61 DADPFSDSDDISKEEAAALKGFKKTFINAKMLKEEGEEWSFSEGCLSIPDVREDVYRNPN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + +GL+A +QHE DH+ G+LF D ++ K+ I KK+ +++ + Sbjct: 121 ITIEYYDENFNKKTEEYNGLIARVIQHEYDHIEGVLFTDKITVFKKQFIKKKLQNIMEGK 180 >gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 165 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P+PILR ++ + N D+ LI++M E MY+ DG+GLAA Q+G+ + V Sbjct: 1 MAILEVIKYPNPILRSKNKIVTAFNDDLKKLIEDMYETMYANDGLGLAAPQVGINLMVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +NP I+ + + + CLS P+ D++R + + D N + Sbjct: 61 VDYEGK-----KYTLVNPAILEKRGEQTGREG-CLSFPEVFEDIERPEIVKIEAFDENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I A GLLA HE+DHL+G L ID +S +KR+MI Sbjct: 115 KYAIEASGLLARAFCHEIDHLHGRLIIDMVSPVKRNMIQ 153 >gi|149370599|ref|ZP_01890288.1| peptide deformylase [unidentified eubacterium SCB49] gi|149356150|gb|EDM44707.1| peptide deformylase [unidentified eubacterium SCB49] Length = 196 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L+++++ I+K ++ L+ NM E MY+ G+GLAA QIG+ R+ ++ Sbjct: 1 MILPIVAYGAPVLKKLAKDIDKDYPELDELLANMYETMYNASGVGLAAPQIGLPIRIFIV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D FIN KII + D + EGCLSIPD R DV R Sbjct: 61 DASPFSDDDELDPAEQEFLSTFKQTFINAKIIEETGDEWAFNEGCLSIPDVREDVFRKPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y D + + GL A +QHE DH+ GILF D LS+LK+ +I +++ + + + Sbjct: 121 IVIEYYDEDFKKHTEKFTGLAARVIQHEYDHIEGILFTDKLSQLKKRLIKRRLEDISKGK 180 >gi|78778228|ref|YP_394543.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] gi|78498768|gb|ABB45308.1| peptide deformylase [Sulfurimonas denitrificans DSM 1251] Length = 178 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K +V +PD L+ S+ +EK + ++ L++ M M ++GIGLAA+Q+G +++++ Sbjct: 1 MKLTIVEYPDKRLKEKSKIVEKFDEELHKLLEAMYASMIESNGIGLAAIQVGYAKQVLLL 60 Query: 62 DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D ++ I IT S+ ++YQEGCLS+P + DV R + V Y D Sbjct: 61 NIPDDNDEQSRDSLIEMINPIITQSEGETIYQEGCLSVPSFYEDVSRFERVCVNYQDREG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I A GLL+ +QHE+DHL+G+LFID LS +R K+ K+ + + Sbjct: 121 NTKTIEATGLLSVAIQHEIDHLHGVLFIDKLSYSRRKKFEKEYKKVQKEK 170 >gi|99082419|ref|YP_614573.1| peptide deformylase [Ruegeria sp. TM1040] gi|99038699|gb|ABF65311.1| Peptide deformylase [Ruegeria sp. TM1040] Length = 169 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 1/162 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDP L P+ D+ LID++LE MY+ G GLAA Q+GVL R+ V Sbjct: 1 MSLLPIVQWPDPRLSTACAPV-GAAEDLGTLIDDVLETMYAAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +NP+V I P+++ SDD ++ +E CLSIP + R I +R+ D + Sbjct: 60 MDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTRITRPTKIRIRWQDADRA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 Q DG A C+QHE DHL+G + DH S +R ++ + Sbjct: 120 AQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQY 161 >gi|294786951|ref|ZP_06752205.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485784|gb|EFG33418.1| peptide deformylase [Parascardovia denticolens F0305] Length = 163 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R Sbjct: 1 MTIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ I EGCLS+P +R+ + V +D + + Sbjct: 61 YNIDGKVGYVL------NPKIVARSGEQYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + + Sbjct: 115 KIVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 161 >gi|86133858|ref|ZP_01052440.1| polypeptide deformylase [Polaribacter sp. MED152] gi|85820721|gb|EAQ41868.1| polypeptide deformylase [Polaribacter sp. MED152] Length = 196 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LR++ I+K ++ LI NM E MY+ G+GLAA QIG RL VI Sbjct: 1 MILPIVAYGDPVLRKMGVEIDKDYPNLKELIANMKETMYNASGVGLAAPQIGKAIRLFVI 60 Query: 62 DLQDHAHRKNPMV------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D A + +INPKII + + EGCLSIPD R DV R + Sbjct: 61 DASPFAEDDDLDDEERATLKDFNRVYINPKIIDEEGEEWTFNEGCLSIPDVREDVTRKSK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +T+ Y D + DGL A QHE DH+ G+LF D +S LK+ +I +K+ + + + Sbjct: 121 VTLEYQDEDFNTHTEVLDGLAARVFQHEYDHIEGVLFTDKVSSLKKRLIKRKLENISKGK 180 >gi|322384330|ref|ZP_08058028.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150832|gb|EFX44269.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 160 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PDP+LR ++P+ K NS + L+D+M + MY +G+GLAA Q+G+L R +V Sbjct: 1 MAIRIIVMDPDPVLREKAKPVTKFNSSLHKLLDDMADTMYENEGVGLAAPQVGILKRAIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + I + + EGCLSIPD + DV+R +TV+ D N Sbjct: 61 MDVGDEHGLIELV----NPEIVATSGEQIGPEGCLSIPDLQGDVRRPMNVTVKGQDRNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I+ LLA C+ HE+DHLNGILF D +L R+ + + Sbjct: 117 EVIVEGTELLARCIMHEVDHLNGILFTDLALKLYRNELEE 156 >gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 181 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ D +LRR PI D+ L ++M + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVIYGDEVLRRKCEPIAPDYPDVKKLAEDMFLTLEEAEGVGLAAPQIGKDIRLFIV 60 Query: 62 DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + F+NP+I FS++ Y EGCLS P ADV RS I +RYMD Sbjct: 61 DCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKTYNEGCLSFPGIHADVARSLSIRMRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + GL A +QHE DH+ G++F D ++ L+R ++ K+ L + + Sbjct: 121 TDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDRIAPLRRQLLKSKLLNLAKGK 173 >gi|169831745|ref|YP_001717727.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] gi|238688341|sp|B1I504|DEF_DESAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169638589|gb|ACA60095.1| peptide deformylase [Candidatus Desulforudis audaxviator MP104C] Length = 154 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 4/157 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PDPILR +R + KI I L N+++ M + G+GLAA QIGV R++V Sbjct: 1 MAVFQIVQYPDPILREKAREVRKITPQIERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + KNP+V INP+I+ D +EGCLS+P V+R +TVR + + Sbjct: 61 V----EDPEKNPIVLINPEIVRLEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 +G A QHE+DHL+GI+F+D + + + Sbjct: 117 QVAYLVEGFTARAFQHEIDHLDGIVFLDRATTIYKRK 153 >gi|330817443|ref|YP_004361148.1| Peptide deformylase [Burkholderia gladioli BSR3] gi|327369836|gb|AEA61192.1| Peptide deformylase [Burkholderia gladioli BSR3] Length = 177 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E + ++ L+ +M E M+ +G GLAA QIGV +L++ Sbjct: 1 MIREILRMGDPRLLEVAKPVEAFDTPELHELVADMFETMHHANGAGLAAPQIGVGLQLII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + D EGCLS+P R V R + + Sbjct: 61 FGFGNNARYPDAPPVPETVLINPSVEYLPPDMEEGWEGCLSVPGMRGVVSRYSKVHYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKRIDRIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|227821802|ref|YP_002825772.1| peptide deformylase [Sinorhizobium fredii NGR234] gi|227340801|gb|ACP25019.1| peptide deformylase-like protein [Sinorhizobium fredii NGR234] Length = 163 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 97/166 (58%), Gaps = 3/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P L + + + +S + +L+D++ + M + GIG+ A IGVL R+ V Sbjct: 1 MALRPIIRFPNPALGMSAEMVTRFDSSLRSLVDDLTDTMRAAPGIGITAPHIGVLQRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + P F+NP++I S++ + EG +S+P +V+R I VRY + + Sbjct: 61 I---ELERQAGPRTFVNPQMIWCSEETERHSEGSVSMPGISEEVERPTSIRVRYQTISGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 TLEEEASGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAVKRFEKLS 163 >gi|157737933|ref|YP_001490617.1| peptide deformylase [Arcobacter butzleri RM4018] gi|157699787|gb|ABV67947.1| polypeptide deformylase [Arcobacter butzleri RM4018] Length = 171 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 104/171 (60%), Gaps = 2/171 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ +EK ++++ L+D+M E M + +G+GLAA+Q+ V ++VI Sbjct: 1 MVREVITYPNKLLRLKSKDVEKFDNELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ I +IT D V+ EGCLS+P + DV R+ I V Y + Sbjct: 61 NLPNEEDIQDKNDLIEAINPVITHKDGTQVFTEGCLSVPGFSEDVTRAEHIIVEYFNRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + Q + ++G LA QHE++HL+G LFI++LS +KR K+ K ++ ++ Sbjct: 121 EKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDKN 171 >gi|296125655|ref|YP_003632907.1| peptide deformylase [Brachyspira murdochii DSM 12563] gi|296017471|gb|ADG70708.1| peptide deformylase [Brachyspira murdochii DSM 12563] Length = 189 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 73/170 (42%), Positives = 104/170 (61%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIG+L RL+VI Sbjct: 1 MLRELVIYGDERLQQVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGILKRLIVI 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D P INP+II ++ + +EGCLS P+ R DV R I V+Y+D Sbjct: 61 SVPDFDDETKPDFKLALINPEIIWHGEEKEILEEGCLSFPEIRDDVARYKEIKVKYLDKE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 QI+ A+G +A LQHE+DH NGI FID L ++ + +++ L Sbjct: 121 GNEQILEAEGYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKDLRNN 170 >gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] gi|238692654|sp|B3QPU5|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327] Length = 187 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+L ++P++ ++S I LI +M + MY GIGLAA Q+G RL+V+ Sbjct: 1 MILPINTYSDPVLTAKAKPLKGVDSSIRELIADMFDSMYKAPGIGLAAPQVGHSLRLLVV 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + + + I + +EGCLS+P DV R + IT+ Y D + Sbjct: 61 DISTIKEYADYKPMVVINPRIVSVAGRNAMEEGCLSVPGVAGDVVRPSKITLHYRDEKFE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++A LQHE+DHL+G LF+D + + R + K + + Q R Sbjct: 121 EHTEEFSDMMARVLQHEIDHLDGTLFVDRMEKRDRRKVQKTLDAIKQGR 169 >gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 178 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+ + + + LI +M E M++ +G GLAA QIGV +LV Sbjct: 1 MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A + INP + SD+ EGCLS+P R V R + Sbjct: 61 IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D DG A +QHE DHL G+L+ ++ R Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSR 161 >gi|99082418|ref|YP_614572.1| formylmethionine deformylase [Ruegeria sp. TM1040] gi|99038698|gb|ABF65310.1| formylmethionine deformylase [Ruegeria sp. TM1040] Length = 165 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VDGSSERGRAV--RLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ AT +QH++DHLNG ++ DHLS++KRDM+ KK KL + Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKARKLAR 165 >gi|332041421|gb|EGI77783.1| peptide deformylase [Hylemonella gracilis ATCC 19624] Length = 179 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P++ + ++ L+ ++L+ M++ +G GLAA QIGV R+V Sbjct: 1 MAVRDILKMGDPRLLRVAQPVQAFDTDELHLLVSDLLDTMHAANGAGLAAPQIGVDLRVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V NP I SD+ EGCLS+P R V R I + Sbjct: 61 IFGSGQTNPRYPDAPVVPRTVLCNPVITPLSDEEQHDWEGCLSVPGLRGVVPRWQRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D +G A +QHE DHL+G L+ + R Sbjct: 121 GFDQYGDPIDRTVEGFHARVVQHECDHLDGKLYPMRVRDFTR 162 >gi|256420948|ref|YP_003121601.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256035856|gb|ACU59400.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 192 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 92/181 (50%), Gaps = 13/181 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+LR++ I + L+ NM E MY+++G+GLAA QI RL V+ Sbjct: 1 MILPIVAYGHPVLRKMCEDITPDYPQLEQLLANMWETMYASNGVGLAAPQINRPIRLFVV 60 Query: 62 D-------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D FIN I++ + + Y EGCLSIP R DV R Sbjct: 61 DSEQIINSLEEDEKKDFPGDNGIKQAFINAHIVSTAGEEWAYNEGCLSIPKVREDVYRPE 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +T+RY+D Q Q G+ A + HE DH++G LFIDHL LKR MI K+ + + Sbjct: 121 SVTLRYVDEKFQPQEKTFTGITARVIFHEYDHIDGKLFIDHLKPLKRRMIKGKLEDISKG 180 Query: 169 R 169 + Sbjct: 181 K 181 >gi|295111635|emb|CBL28385.1| peptide deformylase [Synergistetes bacterium SGP1] Length = 182 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +PDP+L++V+ P+ + ++ + + M VM +DG+GLAA Q+GVL ++ V+D Sbjct: 24 LEVRRYPDPVLKKVAEPVTVFDDELADFVGKMRTVMRVSDGVGLAAPQVGVLRQIAVVDY 83 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ A+ + ++ CLS P A V+R ++ V D + + Sbjct: 84 KEEAYDLINPRVLEQGGEQEGEEG------CLSFPGIYAMVRRPEWVRVEAQDVRGEVHV 137 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G LA HE+DHLNG LFID+LS LKR I +KM K Sbjct: 138 HEASGFLARAFLHEMDHLNGKLFIDYLSPLKRGAIRRKMMK 178 >gi|300781120|ref|ZP_07090974.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] gi|300532827|gb|EFK53888.1| peptide deformylase [Corynebacterium genitalium ATCC 33030] Length = 176 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ IF DP+L + I+ + + L+ +MLE M + G+GLAA QIG+ R+ V Sbjct: 1 MTVRPIRIFGDPVLNSEATRIDTFDEALRTLVSDMLETMDAAGGVGLAANQIGLTKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP D + EGCLSIP +A+V+R + R D + Sbjct: 61 YDCNGMRGA-----LINPVWEPIDDYVQIGPEGCLSIPGIQAEVERHENVIARGQDEFGR 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I +GLLA C+QHE DHL+G+LF+ L R Sbjct: 116 PVAIRGNGLLARCIQHETDHLDGVLFLRRLEPEVRKEAM 154 >gi|306822699|ref|ZP_07456077.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309800930|ref|ZP_07695062.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554244|gb|EFM42153.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308222466|gb|EFO78746.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 161 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKIGYVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYAQVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M Q Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 161 >gi|53712973|ref|YP_098965.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60681185|ref|YP_211329.1| peptide deformylase [Bacteroides fragilis NCTC 9343] gi|253563049|ref|ZP_04840506.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|265763070|ref|ZP_06091638.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|81315745|sp|Q5LEQ9|DEF_BACFN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81690706|sp|Q64VP5|DEF_BACFR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|52215838|dbj|BAD48431.1| peptide deformylase [Bacteroides fragilis YCH46] gi|60492619|emb|CAH07391.1| putative peptide deformylase [Bacteroides fragilis NCTC 9343] gi|251946825|gb|EES87107.1| peptide deformylase [Bacteroides sp. 3_2_5] gi|263255678|gb|EEZ27024.1| peptide deformylase [Bacteroides sp. 2_1_16] gi|301162674|emb|CBW22221.1| putative peptide deformylase [Bacteroides fragilis 638R] Length = 184 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M DG+GLAA QIG+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQVAEDITVDYPNLKELIENMFETMDHADGVGLAAPQIGLPIRVVVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ +IN I + +EGCLS+P VKR + I VRYMD Sbjct: 61 NLDVLSEDYPEYKDFRKAYINAHIDVVEGEEVSMEEGCLSLPGIHESVKRGSKIHVRYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 ENFVEHNEVVEGFLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173 >gi|319902632|ref|YP_004162360.1| peptide deformylase [Bacteroides helcogenes P 36-108] gi|319417663|gb|ADV44774.1| peptide deformylase [Bacteroides helcogenes P 36-108] Length = 185 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 99/173 (57%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LIDNM E M + +G+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPNLKELIDNMFETMDNAEGVGLAAPQIGLPIRVVVV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ V+IN I+ + + +EGCLS+P V+R I V+Y+D Sbjct: 61 NLDVLSDDMPEYKDFRKVYINAHILDVAGEEVSMEEGCLSLPGIHESVRRGDKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL+G +FIDH+S L++ MI K+ L++ + Sbjct: 121 ENMVAHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLGSLLKGK 173 >gi|255656564|ref|ZP_05401973.1| peptide deformylase 2 [Clostridium difficile QCD-23m63] gi|296449984|ref|ZP_06891748.1| peptide deformylase [Clostridium difficile NAP08] gi|296878365|ref|ZP_06902373.1| peptide deformylase [Clostridium difficile NAP07] gi|296261254|gb|EFH08085.1| peptide deformylase [Clostridium difficile NAP08] gi|296430663|gb|EFH16502.1| peptide deformylase [Clostridium difficile NAP07] Length = 146 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +EKI+ I+ L+D+M E MY DG+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVQIGEPVLRKKSKKVEKIDEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I + +EGCLS+ +V+R ++ VR ++ N + Sbjct: 61 IDIGEELIELINPEIIETSGE------QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HELDHL+GILF+D + + Sbjct: 115 TIELEGEELLARAFCHELDHLDGILFVDKIEK 146 >gi|148245003|ref|YP_001219697.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] gi|146326830|dbj|BAF61973.1| polypeptide deformylase [Candidatus Vesicomyosocius okutanii HA] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 102/179 (56%), Gaps = 13/179 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PD LR ++ + +N I LI NM E MY+ +GIGLAA Q+ ++VVI Sbjct: 1 MILPILSYPDKRLRIKAKNVNIVNKTIQTLIKNMFETMYARNGIGLAATQVNQHLQIVVI 60 Query: 62 DLQDHAH-------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D+ + +K + I + EGCLS+ D++A+++R+ Sbjct: 61 DVPNSQFLFKNRKNNSQKLLQKQHPLCFINPEIKEKYGQEKHTEGCLSVSDFQAEIQRAN 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I V+ ++ + I+ A GLLA C+QHE+DHL GILF+D+LS+LK+ + +++ K+ + Sbjct: 121 HIKVKALNEKGEIFILQATGLLAICIQHEIDHLKGILFVDYLSKLKQKRLLERIKKMTK 179 >gi|145594886|ref|YP_001159183.1| peptide deformylase [Salinispora tropica CNB-440] gi|145304223|gb|ABP54805.1| peptide deformylase [Salinispora tropica CNB-440] Length = 167 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M +P+ I DP+LR + P+ ++D+ L+ ++++ + G G+AA QIGV ++ Sbjct: 1 MTMRPIRIIGDPVLRTPAAPVTSFDADLRALVADLMDTLLGAPGRAGVAAPQIGVSAQVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D H + + DD EGCLSIP R+ T R MD + Sbjct: 61 VYDADGHRGH------LINPTLELGDDRQDDDEGCLSIPGLYFPTPRAMRATARGMDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q I G LA LQHE DHL G L++D L R +++ Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGETRRRALREVR 158 >gi|294628122|ref|ZP_06706682.1| peptide deformylase [Streptomyces sp. e14] gi|292831455|gb|EFF89804.1| peptide deformylase [Streptomyces sp. e14] Length = 213 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 82/162 (50%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + D L R + + ++ L++++ MY+ G+GLAA Q+G+ R+ V D Sbjct: 38 VRPLTLLGDAALAAPCREVTEFGPELAALVEDLFATMYAARGVGLAANQVGLDLRVFVYD 97 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A V+R V + Sbjct: 98 CPDDEDVRHLGHLVNPRLVAADGLLFRGPEGCLSLPGLEAGVERHDHAVVEGFTVAGEPV 157 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL+G L++DHL+ +R + ++ ++ Sbjct: 158 TVEGTGFFARCLQHECDHLDGRLYVDHLTGWRRRKVLRQAAR 199 >gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112] Length = 169 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+K + ++ PILR+ S + + N ++ N +D M++ M +GIGLAA Q+G+ R V Sbjct: 1 MIKLNIYVYEAPILRKKSEEVVEFNDELRNTLDEMVKTMRLANGIGLAANQVGIGKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D + +NP+I++F ++ +QEGCLSIP +V R I VRY D N Sbjct: 61 LEIDDEITK-----VVNPEILSFGEEMVEFQEGCLSIPGIFKNVLRPESIVVRYQDENGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +GL + QHELDH++GILFID +S + R++I KK+ + + Sbjct: 116 FVERELNGLKSRAFQHELDHIDGILFIDKISPMSRNLIRKKLEVMKKN 163 >gi|88608268|ref|YP_506280.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] gi|123763725|sp|Q2GE16|DEF_NEOSM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|88600437|gb|ABD45905.1| peptide deformylase [Neorickettsia sennetsu str. Miyayama] Length = 186 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 104/180 (57%), Gaps = 13/180 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL----- 55 M L+I PDP+L VS + ++ + +D+MLE MY GIGLAAVQ+GVL Sbjct: 1 MALLALIIEPDPLLHEVSEAVAGLSDEKRVFLDDMLETMYHCGGIGLAAVQVGVLERIIV 60 Query: 56 --------YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + ++ + P F+NP+II FS + EGCLS+P+ ++ R Sbjct: 61 VDVPVGKEWHSSPLNHVGYKSSGGPYYFVNPEIIEFSQNLVPADEGCLSLPEQHYEIIRP 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+Y++ + + ++ A+G LA C+QHE+DHLNG L++ HLS+LK D+ KK +++ + Sbjct: 121 DAVVVKYLNYDGEECLLKANGWLARCIQHEMDHLNGRLYVSHLSKLKHDLAIKKAAEIKK 180 >gi|315637680|ref|ZP_07892885.1| peptide deformylase [Arcobacter butzleri JV22] gi|315478027|gb|EFU68755.1| peptide deformylase [Arcobacter butzleri JV22] Length = 171 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 103/170 (60%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ +LR S+ +EK +S++ L+D+M E M + +G+GLAA+Q+ V ++VI Sbjct: 1 MVREVITYPNKLLRLKSKDVEKFDSELHTLLDDMYETMIAQNGVGLAAIQVAVPLNVLVI 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ I +IT D V+ EGCLS+P + DV R+ I V Y + Sbjct: 61 NLPNEEDVQDKNDLIEAINPVITHKDGTQVFTEGCLSVPGFSEDVTRAEHIVVEYFNRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Q + ++G LA QHE++HL+G LFI++LS +KR K+ K ++ + Sbjct: 121 EKQTMESEGFLAVAWQHEMEHLSGHLFIENLSIIKRKKFEKEWKKRLKDK 170 >gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM 18228] Length = 184 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + V+INP I+ D+ +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSDDMPEFKDFKRVYINPHILETGDEMVSMEEGCLSLPGIHESVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V + Sbjct: 121 ENMTAHDEWVEGYLARVMQHEFDHLDGTMFIDHLSSLRKQMIRGKLNNMVNGK 173 >gi|311739504|ref|ZP_07713339.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305320|gb|EFQ81388.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 170 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I+ DP+L + I K ++ + L +MLE M G+GLAA Q+G+ + + Sbjct: 1 MSLRELRIYGDPVLGSRAEEISKFDAGLRALASDMLETMDKAGGVGLAANQVGI-LQRIF 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H +NP + EGCLSIP A+ R + V D + Sbjct: 60 VYDCSHTQSGLRGAIVNPVWTPVGEQQQTGPEGCLSIPGISAETTRFNQVFVSGQDIEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GL+A C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVSMVASGLMARCIQHETDHLDGVLFLQRLEAPVRKEAMRAIRE 163 >gi|114766696|ref|ZP_01445635.1| peptide deformylase [Pelagibaca bermudensis HTCC2601] gi|114541086|gb|EAU44141.1| peptide deformylase [Roseovarius sp. HTCC2601] Length = 164 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARPCIPWPDKRLRSPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + R P+ NP+I+ S + E ++P A ++R +TVR+++ + Sbjct: 61 VDASEE--RGQPVRMANPEILHASVKLRSHDEASPNLPGVWAKIERPRAVTVRFLNEAGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHLNG ++ DHLS++KRD++ ++ K Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGKMYFDHLSKVKRDILLRRAKK 162 >gi|237747725|ref|ZP_04578205.1| peptide deformylase [Oxalobacter formigenes OXCC13] gi|229379087|gb|EEO29178.1| peptide deformylase [Oxalobacter formigenes OXCC13] Length = 178 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L R S P+++ N ++ LI++M E MY+ DG GLAA QIG+ R+V Sbjct: 1 MAVRKILKMGDSRLLRESEPVKQFNTPELNQLIEDMYETMYAADGAGLAAPQIGINQRVV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP I SD+ EGCLSIP R V R A I Sbjct: 61 IFGYDENNRYPDAPPVPKTVLINPVIRPLSDEIDAGWEGCLSIPGMRGIVPRWAKIHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D ADG A +QHE DHL+GIL+ + L Sbjct: 121 FDQFGNKISRNADGFHARVVQHECDHLDGILYPFRIDDL 159 >gi|270284179|ref|ZP_05965690.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277263|gb|EFA23117.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 169 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + PDP+LR PI++I I +L+ ++L+ + GL+A QIGV R Sbjct: 10 AIRPIRVVPDPVLRTQCDPIKEITPAIRHLVQDLLDTVDDPGRAGLSANQIGVPLRAFSY 69 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ V + EGCLS+P +R+ + R +D + Sbjct: 70 NIDGKIGYILNPVLEETRGE------QYGDEGCLSVPGLWYKTRRADYARCRGIDLDGNE 123 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ DG++ +QHE DHL+G +++D L + +R K M + Q Sbjct: 124 VVLEGDGIMGRMIQHETDHLDGHVYLDRLEKEERRAALKYMREHQQ 169 >gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A] gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A] Length = 195 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 97/179 (54%), Gaps = 12/179 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + P+L++ + I + ++ LI+NM E MY+++G+GLAA QIG+ RL VI Sbjct: 1 MILPIVAYGAPVLKKEAAEISEEYPNLDQLIENMWETMYASNGVGLAAPQIGLSIRLFVI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + VFINP +I + EGCLSIPD R DV R Sbjct: 61 DTAPFSEDDELDELEAETLKSFKKVFINPVVIEEDGSLWEFNEGCLSIPDVREDVSRHER 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I + Y D + Q + GL A +QHE DH+ G+LF DHL+ LKR ++ +++ + + Sbjct: 121 IKIHYFDQQFKEQELVLTGLAARVVQHEYDHIEGVLFTDHLTPLKRRLLKNRLNSISKG 179 >gi|317178847|dbj|BAJ56635.1| peptide deformylase [Helicobacter pylori F30] Length = 175 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|312132641|ref|YP_003999980.1| def1 [Bifidobacterium longum subsp. longum BBMN68] gi|311773592|gb|ADQ03080.1| Def1 [Bifidobacterium longum subsp. longum BBMN68] Length = 162 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++LE + GL+A QIGV R Sbjct: 1 MSIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLETVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNIDGKVGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M Sbjct: 115 EVVLEGSGLMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRNRQ 160 >gi|298252788|ref|ZP_06976582.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|297533152|gb|EFH72036.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 162 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR I +I + +L+D++LE + GL+A QIGV +R Sbjct: 1 MSIRKIRIVPDPVLRTPCDEIREITPAVKHLVDDLLETVNDPGRAGLSANQIGVSFRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +I EGCLS+P +R+ + +D + + Sbjct: 61 YNINGRIGYIL------NPVIEELKGEQYDDEGCLSVPGLWYKTRRANYARACGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ +GL+A +QHE DHL+G +++D L + R +++ ++ Sbjct: 115 TVVLEGEGLMARMIQHECDHLDGHIYLDRLEKDVRRQALRELRNNMRN 162 >gi|282856366|ref|ZP_06265645.1| peptide deformylase [Pyramidobacter piscolens W5455] gi|282585737|gb|EFB91026.1| peptide deformylase [Pyramidobacter piscolens W5455] Length = 159 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +V FPDP+LRR +RP+ + + +D M VM DG+G+AA Q+GV ++ V+ Sbjct: 1 MQLKIVEFPDPVLRRATRPVTVFDEALKTFVDEMTIVMKDDDGVGIAAPQVGVSKKVAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +I + +EGCLS P +V+R+ + V D Sbjct: 61 CFEGER------YVLVNPVIVEATGTQRGEEGCLSFPGIFGEVERAERVVVECQDETGAK 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + A+G +A QHE++HL G L IDH S +KR++I K++ K Sbjct: 115 RRHEAEGFVARAFQHEIEHLEGKLLIDHFSPMKRELIRKRLMKRK 159 >gi|189461816|ref|ZP_03010601.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] gi|189431410|gb|EDV00395.1| hypothetical protein BACCOP_02482 [Bacteroides coprocola DSM 17136] Length = 184 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 96/173 (55%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VVI Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + +INP I+ ++ +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSEDMPEFKDFRRAYINPHILETGEELVSMEEGCLSLPGIHEAVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIKGKLNNMLKGK 173 >gi|302389590|ref|YP_003825411.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] gi|302200218|gb|ADL07788.1| peptide deformylase [Thermosediminibacter oceani DSM 16646] Length = 155 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ S+ + + + L+ +M E M +G+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQYGDEVLRKKSKKVTVFDEKLKQLLADMAETMRHANGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + INP+II+ + + CLSIP +V R + VR + + Sbjct: 61 IDVGEG-----LIELINPEIISKEGEVVEIEG-CLSIPGITGEVPRPQKVRVRAQNPEGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I + LLA L HE+DHL+GILFID R+ Sbjct: 115 FVEIEGEDLLARALCHEIDHLDGILFIDKAKRI 147 >gi|323141161|ref|ZP_08076062.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414304|gb|EFY05122.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 160 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 9/159 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +VI P+LR V++P+E+I+ + L+ +M E MYS DG+GLAA Q+GV R+VV Sbjct: 1 MAKLKIVIAGAPVLREVAQPVERIDKKLQRLLRDMAETMYSADGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + + EGCLS+PDY +V+RS ++ + D Q Sbjct: 61 IDVGEGLYELINPEIVKREGKVLGS------EGCLSVPDYEGEVERSEYVECEFTDKTGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKRD 156 ++ A GLLA C+QHELDHL+GILFID +S +++ Sbjct: 115 RMLLSASGLLAICIQHELDHLDGILFIDKAKTISPKQKE 153 >gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure Length = 193 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 91/167 (54%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 17 LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NPKI +SD + EGCLS P A+V R + + D + Sbjct: 77 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 137 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 183 >gi|320533868|ref|ZP_08034450.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133894|gb|EFW26260.1| peptide deformylase [Actinomyces sp. oral taxon 171 str. F0337] Length = 175 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIG+ R Sbjct: 13 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + D++ EGCLS+P +R+ + +D + + Sbjct: 73 WNIDGEIG----YILNPRIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 129 EVVVEGEELMARCIQHECDHLEGRLYLDRLDRKNRAKAMKELR 171 >gi|148273059|ref|YP_001222620.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830989|emb|CAN01934.1| putative polypeptide deformylase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 163 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + + EGCLS+P R + +D + Sbjct: 61 YNVGPAFG-----YVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVITGIDLEGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|256826367|ref|YP_003150327.1| peptide deformylase [Kytococcus sedentarius DSM 20547] gi|256689760|gb|ACV07562.1| peptide deformylase [Kytococcus sedentarius DSM 20547] Length = 192 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + ++ + ++ +I L+ +M + M + +G+GLAA Q+GV +R+ V Sbjct: 1 MAVRPITIIGHKALHQPTKKVREVTDEIRTLVADMFDTMEAAEGVGLAANQVGVRWRIFV 60 Query: 61 IDLQDHAHRKN-------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D V + S D EGCLS+P RS + V Sbjct: 61 YDCTHDPEAGPDARGVVVNPVLEKEHVSPLSADPEADHEGCLSVPGESFPTARSDWARVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + GLL CLQHE DHL+G L+++ LS + + + Sbjct: 121 GTDLDGNAISVEGTGLLGRCLQHETDHLDGHLYVERLSPEDKRRARDAIKE 171 >gi|298529648|ref|ZP_07017051.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] gi|298511084|gb|EFI34987.1| peptide deformylase [Desulfonatronospira thiodismutans ASO3-1] Length = 169 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +PD IL + +RP+EKI+ I++L +M +MY GIGLAA Q+G R+V + Sbjct: 1 MSRKIHTYPDKILTQKARPVEKIDDYIIDLSRDMARLMYEHRGIGLAAPQVGESLRVVTV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL ++++ +INP+II D+ + +EGCLS+ Y+ V R+ + VR ++ + Sbjct: 61 DLSGPDNQEDLFTYINPEIIASEDETTT-EEGCLSVAGYQTRVCRARKVKVRALNLQGEE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + L A CLQHE+DHLNGILFIDH+SRLKR M KK+ K ++ + Sbjct: 120 VIHEGEDLWAVCLQHEIDHLNGILFIDHISRLKRAMYDKKVKKWLENK 167 >gi|89074343|ref|ZP_01160825.1| peptide deformylase [Photobacterium sp. SKA34] gi|89049830|gb|EAR55371.1| peptide deformylase [Photobacterium sp. SKA34] Length = 170 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVADVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + + + I ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSEERNEPH---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168 >gi|306836177|ref|ZP_07469161.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567898|gb|EFM43479.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 184 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ DP+L + I ++ + L MLE M + G+GLAA Q+G+L R+ V Sbjct: 1 MAELDIRLYGDPVLSSRAEEITTFDTGLRTLAQTMLETMDAAGGVGLAANQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP +D EGCLSIP AD R + V D + Sbjct: 61 YDCSP-IQAGLRGVLINPVWTPLGEDMQTGPEGCLSIPGISADTPRYNRVFVSGRDVEGR 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A GLLA C+QHE DHL+G+LF+ L R + + + Sbjct: 120 PVGMVASGLLARCIQHETDHLDGVLFLRRLGDADRKAAMRTIRE 163 >gi|326798583|ref|YP_004316402.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549347|gb|ADZ77732.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 190 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K P+V + DP+L+R + I+K ++ NLI NM E MY+ G+G+AA Q+G+ RL V+ Sbjct: 1 MKLPIVAYGDPVLKRKAIDIDKDYPELENLIANMFETMYAAHGVGIAAPQVGLSIRLFVV 60 Query: 62 DLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A P VFIN I + + EGCLSIPD R DV R + I +RY Sbjct: 61 DASPFAEDDAPELKDFKKVFINAHIEEEEGEKWEFNEGCLSIPDIREDVSRHSIIHIRYF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D N DGL A +QHE DH+ G LF D LS L++ M+ K+ + + Sbjct: 121 DENWVEHREKYDGLAARVIQHEYDHIEGKLFTDRLSVLRKAMLKSKLDAISKG 173 >gi|78066802|ref|YP_369571.1| peptide deformylase [Burkholderia sp. 383] gi|77967547|gb|ABB08927.1| Peptide deformylase [Burkholderia sp. 383] Length = 177 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ +L++ Sbjct: 1 MIREILKMGDPRLLEVAKPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + ADG A +QHE DHL G L+ ++ R Sbjct: 121 DQYGEKIDRVADGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|150396253|ref|YP_001326720.1| peptide deformylase [Sinorhizobium medicae WSM419] gi|150027768|gb|ABR59885.1| peptide deformylase [Sinorhizobium medicae WSM419] Length = 163 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+ L + P+ + + + L ++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRSIIRYPNAALATATEPVSRFDESLRQLAHDLIDTMRAAPGIGITAPHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + P F+NP+I+ S D + + EG +S+P +V+R A + VR+ + Sbjct: 61 I---ETDPQAGPRSFVNPEILWQSADSTRHSEGSVSMPGIAEEVERPARVRVRFQTLEGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A GL+A CLQHE+D L+GI +I LSRLKR+ K+ KL Sbjct: 118 THEEEAAGLMAVCLQHEIDQLDGIFWIRRLSRLKRERAIKRFEKL 162 >gi|282858813|ref|ZP_06267958.1| peptide deformylase [Prevotella bivia JCVIHMP010] gi|282588382|gb|EFB93542.1| peptide deformylase [Prevotella bivia JCVIHMP010] Length = 186 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V++ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MILPIYTYGQPVLRKVAQDIPTDYPDLQELIQNMFETCSASDGVGLAAPQIGKSIRVVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + + +EGCLS+P V+R+ + + ++ Sbjct: 61 DLDVMSDAFPEYKDYKHAFINGHILEFDDTETEIMEEGCLSLPGLHEKVERAKRVHIEWL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N QH + DG LA +QHE DHL G +F D +S ++ MI KM ++Q + Sbjct: 121 DENLQHHDEWVDGFLARVIQHEFDHLEGKVFTDRVSPFRKQMIKNKMKAMLQGK 174 >gi|237786237|ref|YP_002906942.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237759149|gb|ACR18399.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 220 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP+L + P+ + +I L+ +M E + + G+GLAA QIGV RL V Sbjct: 11 MTVRPIVIAGDPVLHNPTEPVTESPEEIAELVADMYETLELSHGVGLAANQIGVAKRLFV 70 Query: 61 IDLQD----------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 D D NP++ + T EGCLS+P Sbjct: 71 YDCPDIEGPDGDSKSEEELKAQGGPRRKGCVVNPVLETSEIPETMPATDGSDAEGCLSVP 130 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 R+ + V D + + + G A CLQHE+ HL+G L+ D L M Sbjct: 131 GLDFPTGRAHWARVTGTDEHGEPVRVEGYGFFARCLQHEVGHLDGYLYTDMLIGRWARMA 190 Query: 159 TKKMSK 164 KK+ + Sbjct: 191 KKKIKR 196 >gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|238058216|sp|B1GZ10|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 168 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 83/159 (52%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + + DP LR+ + + +IN I L +MLE MYS G+GLAA Q+G+L R V Sbjct: 1 MAKLKIKKYGDPALRKRAEAVSEINEIIKELASDMLETMYSASGVGLAAPQVGILLRFCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I ++ +EGCLS P + +V R I Y D N Sbjct: 61 IDVDPNKKSPI---VMINPEIISGENKITAEEGCLSFPGFYGNVNRFENIIAGYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Q I A LA LQHE+DHL+ LFID+L KR+ I Sbjct: 118 RQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWKRESIE 156 >gi|219669870|ref|YP_002460305.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] gi|254767579|sp|B8FS81|DEF_DESHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219540130|gb|ACL21869.1| peptide deformylase [Desulfitobacterium hafniense DCB-2] Length = 150 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +LR + P+++I +I L+DNML+ +Y +G+GLAA Q+GV R+VV Sbjct: 1 MAIYQIVEIGSEVLREKAVPVKEITPNIAKLLDNMLDTLYDANGVGLAAPQVGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP II + + CLSIP V R+A + V ++ + Sbjct: 61 IDVGEG-----PLELINPVIIAKEGEDLDDEG-CLSIPGITGQVARAAKVKVEALNRQGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 Q+I +GLL+ CLQHE+DHL GILF+D + R Sbjct: 115 LQVIEGEGLLSRCLQHEIDHLEGILFVDKAKKTSRR 150 >gi|329943974|ref|ZP_08292243.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] gi|328531407|gb|EGF58249.1| peptide deformylase [Actinomyces sp. oral taxon 170 str. F0386] Length = 163 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + D++ EGCLS+P +R+ + D N + Sbjct: 61 WNIDGEIG----YILNPKIVELSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGTDLNGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 117 EVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAAAMKELR 159 >gi|299136398|ref|ZP_07029581.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298600913|gb|EFI57068.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 185 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 1/168 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +PDP+L + + + ++ L+D M E MY+ GIGLAA QIG+ ++ VID Sbjct: 18 IHEVVKYPDPVLSKPGEKVTEFTPELAQLVDEMFESMYAAQGIGLAAPQIGISKQITVID 77 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++ + INP+II + V +EGCLS+P+ R V R+A + VR + + Sbjct: 78 VSFKERPEDKLALINPEIIER-EGKQVEEEGCLSLPEIREKVSRAARVKVRAQNVKGEFF 136 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + LLA LQHE+DHL+GILFI+HLSRLKRD++ +++ KL + + Sbjct: 137 EVEGEELLARALQHEIDHLHGILFIEHLSRLKRDLVHRRIRKLQKNGE 184 >gi|108762860|ref|YP_635455.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108466740|gb|ABF91925.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 168 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 5/168 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+P +L ++P+ + L++ M E M +GIG+AA Q+G R+ ++ Sbjct: 1 MARDIVIWPHKVLTSSTKPVTDFGPPLETLLEQMAESMKEAEGIGIAANQVGESLRVALV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +D + I K + +EGCLS+P R + VRY D +A+ Sbjct: 61 GREDGTFFEIVNPQILEKKEPVT-----MEEGCLSVPREWEKCPRFHKVKVRYQDKSAEW 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A+G LA LQHE+DHL+G +F+DHLS LKR +I +M KL +++ Sbjct: 116 HELEAEGRLAHVLQHEIDHLDGHVFVDHLSSLKRTLILDRMKKLQKVK 163 >gi|297379991|gb|ADI34878.1| peptide deformylase [Helicobacter pylori v225d] Length = 175 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+ + Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFFEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEMDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|15888871|ref|NP_354552.1| peptide deformylase [Agrobacterium tumefaciens str. C58] gi|23396558|sp|Q8UF49|DEFL_AGRT5 RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15156637|gb|AAK87337.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58] Length = 164 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + L+ ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +INP+I + S + EG +S+P + +V+R + + VR+ D Sbjct: 61 L----ELTPGTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGA 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Q A+G A C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 117 EQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEK 160 >gi|189499854|ref|YP_001959324.1| peptide deformylase [Chlorobium phaeobacteroides BS1] gi|238692288|sp|B3EPG5|DEF_CHLPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189495295|gb|ACE03843.1| peptide deformylase [Chlorobium phaeobacteroides BS1] Length = 185 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 70/169 (41%), Positives = 105/169 (62%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + D +LRR ++P+++ ++ + LI NMLE M + +GIGLAA Q+GV RL+V+ Sbjct: 1 MILPINTYSDEVLRRKAKPLKESDAQLEELISNMLESMRNAEGIGLAAPQVGVSLRLIVV 60 Query: 62 DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL + +PMV INP I++ S+ +EGCLSIPD R DV R + I ++Y D N Sbjct: 61 DLSLAEGYEAASPMVVINPHILSVKSFNSM-EEGCLSIPDVRGDVVRPSAIQLKYRDRNF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I D L A +QHE+DHL+G LF+D + R R I K++ L + Sbjct: 120 EECIGEFDRLAARVIQHEIDHLDGTLFVDRMQRRDRRKIQKELDALSRG 168 >gi|317009197|gb|ADU79777.1| peptide deformylase [Helicobacter pylori India7] Length = 174 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPKEDGVQHKEDCLEIINPKLIEAGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|269102516|ref|ZP_06155213.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162414|gb|EEZ40910.1| peptide deformylase [Photobacterium damselae subsp. damselae CIP 102761] Length = 171 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I L+D+ML+ MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLVDDMLQTMYETGNGIGLAAPQVGRKEAI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + + I ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSEERNEPQ---VFINPKIVRGENPVVGQEGCLSVPDYYADVERFEKIAITALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNEINMERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLRSQ 168 >gi|224419234|ref|ZP_03657240.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253826952|ref|ZP_04869837.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313142736|ref|ZP_07804929.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|253510358|gb|EES89017.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] gi|313131767|gb|EFR49384.1| peptide deformylase [Helicobacter canadensis MIT 98-5491] Length = 168 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 2/168 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ +P+PILR++S+PIE N + L+D+M EVM +G+G++A+Q+ R ++I Sbjct: 1 MLEVITYPNPILRQISQPIEVFNESLHELLDSMYEVMLQKNGVGISAIQVAKPIRALLIC 60 Query: 63 LQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 L D ++ + D ++ EGCLS+P++ +VKR++ + V Y D Sbjct: 61 LPDEEGNQHKEDLLEIINPQILEKDGEIIFNEGCLSVPEFYEEVKRASSLKVAYQDRYGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A LA LQHE+DHLNGILFID LS LKR K++ + + Sbjct: 121 PKEMEAKDYLAVALQHEIDHLNGILFIDKLSILKRKKFEKELKQKRKG 168 >gi|281420284|ref|ZP_06251283.1| peptide deformylase [Prevotella copri DSM 18205] gi|281405586|gb|EFB36266.1| peptide deformylase [Prevotella copri DSM 18205] Length = 185 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V+ I D+ LI+NM E + S++GIGLAA QIG+ RLVVI Sbjct: 1 MILPIYIYGQPVLRKVAEDITPDYPDLKVLINNMYETLDSSNGIGLAAPQIGLPIRLVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + ++ +EGCLSIP V R I V+YM Sbjct: 61 DLDVLSEDFPEYKGFRHAFINAHILERDEENTDSSEEGCLSIPGINEKVVRPTRIHVKYM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D + + +G LA +QHE DHL G +F+D +S L+++MI K+ +++ Sbjct: 121 DEDFNEHDEWIEGYLARVMQHEFDHLEGTMFVDRVSPLRKNMIAGKLKSIIKG 173 >gi|90579699|ref|ZP_01235508.1| peptide deformylase [Vibrio angustum S14] gi|90439273|gb|EAS64455.1| peptide deformylase [Vibrio angustum S14] Length = 170 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M ++ P+P LR + + + ++ I LID+ML MY T +GIGLAA Q+G + Sbjct: 1 MAVLEILTEPNPKLRVQAEDVVDVKAEHIQTLIDDMLHTMYETGNGIGLAAPQVGRKESI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VIDL + + I ++ V QEGCLS+PDY ADV+R I + +D + Sbjct: 61 IVIDLSEERNEPQ---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D LA LQHE+DHL GILFID+LS LKR M KK+ K ++ + Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKFLKAQ 168 >gi|330837393|ref|YP_004412034.1| peptide deformylase [Spirochaeta coccoides DSM 17374] gi|329749296|gb|AEC02652.1| peptide deformylase [Spirochaeta coccoides DSM 17374] Length = 167 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 4/167 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V + +LRR + P++ ++ + L+D+M + + G+GLAA Q+GV RL ++ Sbjct: 1 MLEIVTLGEDVLRRRAEPVKVFDAALRLLVDDMFDSLAQERGVGLAAPQVGVSQRLFIV- 59 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 VFINP+II S + + Y+EGCLSIP DV R IT++ D + Sbjct: 60 ---DIEGGEKGVFINPEIIETSMEQTPYEEGCLSIPGIWHDVVRPQRITMQAQDVTGKFF 116 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADG+ A LQHE DHLNG LFID L+ + + K + R Sbjct: 117 TVKADGMFARVLQHEYDHLNGTLFIDRLNEQDKKKVLDAYEKKQKPR 163 >gi|303237149|ref|ZP_07323719.1| peptide deformylase [Prevotella disiens FB035-09AN] gi|302482536|gb|EFL45561.1| peptide deformylase [Prevotella disiens FB035-09AN] Length = 187 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ P+LR+V+ I ++ LI +M E ++DGIGLAA QIG RLVVI Sbjct: 1 MILPIYTLGQPVLRKVAEDIPLDYPNLQQLIADMFETCSASDGIGLAAPQIGKSIRLVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + T + +EGCLS+P +V R I V+Y+ Sbjct: 61 DLDVISESFPEYKDFKHAFINGHILETDDSETETMEEGCLSLPGIHENVTRPKRIHVKYV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + + DG LA +QHE DH+ G +F D +S ++ +I KKM L Q R Sbjct: 121 DENLEEHDEWIDGYLARVIQHEFDHIEGKVFTDRISPFRKQIIAKKMKALSQGR 174 >gi|295100691|emb|CBK98236.1| peptide deformylase [Faecalibacterium prausnitzii L2-6] Length = 178 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRVFV 60 Query: 61 IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPENYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + + A+GLLA C+QHE DHL+GI ++ Sbjct: 121 AQDRNGEWFELEAEGLLARCIQHENDHLDGITIME 155 >gi|159038089|ref|YP_001537342.1| peptide deformylase [Salinispora arenicola CNS-205] gi|157916924|gb|ABV98351.1| peptide deformylase [Salinispora arenicola CNS-205] Length = 168 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M +P+ + DP+LR + P+ ++++ L+ ++++ + G G+AA QIGV R+ Sbjct: 1 MTMRPIRLIGDPVLRTPAEPVTSFDAELRALVADLMDTLLGAPGRAGVAAPQIGVSARVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D H + D+ EGCLS+P R+ T +D + Sbjct: 61 VYDADGHRGHLV------NPTLELGDEQQDDDEGCLSVPGLYFPTSRAMHATAHGVDQHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q I G LA LQHE DHL G L++D L R +++ Sbjct: 115 QPLTITGTGFLARALQHETDHLAGRLYVDTLRGEIRRRALREIR 158 >gi|85700127|gb|ABC74513.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIGTGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|315586543|gb|ADU40924.1| peptide deformylase [Helicobacter pylori 35A] Length = 175 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|327312425|ref|YP_004327862.1| peptide deformylase [Prevotella denticola F0289] gi|326944165|gb|AEA20050.1| peptide deformylase [Prevotella denticola F0289] Length = 214 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 29 MVLPIYTYGQPVLRKVAADIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVI 88 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + +EGCLS+P V R+ I V+Y+ Sbjct: 89 DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q + Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202 >gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + INP I +++ ++EGCLS+P V+R + + Y++ N Sbjct: 61 VC----EDGNRKIRKIINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVKLNYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 ETVEEIAEDLLAVVVQHENDHLNGILFVEKISPIAKRLIAKKLANMKKE 165 >gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745] Length = 177 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LV DP LR+ + I K++ D+ L +MLE MY+ DG+GLA Q+GV+ R++V Sbjct: 1 MAVLKLVYEGDPRLRQKAVRIRKVDDDLRRLAADMLETMYAADGVGLAGPQVGVMRRIIV 60 Query: 61 IDL---QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I + ++ + + I + V EGCLSIP++ +V R+ +TV+ D Sbjct: 61 IGVPAGFENEDDPPIEMALINPEIVRASGRQVGPEGCLSIPNWYGEVPRAMHVTVKARDL 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I A G LA LQHE+DHL+GILF D + Sbjct: 121 DDREIRIKASGGLARILQHEIDHLDGILFTDRVED 155 >gi|50954573|ref|YP_061861.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951055|gb|AAT88756.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 188 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I D +L + + + ++ L+ M + M G+GLA Q+GV RL V Sbjct: 1 MAVLPIRITGDRVLHTRADEVTAFDRELRTLVAEMFDTMDEAPGVGLAGPQVGVPLRLFV 60 Query: 61 IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + V + T D EGCLS P R ++R+ + ++ + Sbjct: 61 YGWTDDDEVLHRGVAINPVLWQSPLETGPLDEDAECEGCLSFPGERFPLRRAERVILQAV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + +G LA QHE DHL G+L++D L Sbjct: 121 DLEGAPFEVRTEGWLARIFQHECDHLEGVLYVDRL 155 >gi|289706123|ref|ZP_06502494.1| peptide deformylase [Micrococcus luteus SK58] gi|289557156|gb|EFD50476.1| peptide deformylase [Micrococcus luteus SK58] Length = 210 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 8/175 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 1 MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAAPQVGVGLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------RADVKRSAFITVR 113 D N INP + ++R + + Sbjct: 61 TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+G A +QHE DHLNG L+++ L K K+ + +L Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEG-KWQRRWKRAQRAERL 174 >gi|152981416|ref|YP_001353370.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] gi|151281493|gb|ABR89903.1| formylmethionine deformylase [Janthinobacterium sp. Marseille] Length = 173 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 102/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L V+ P+++I DI L+ +M + MY+ DGIGLAA Q+ V +++V Sbjct: 1 MTRLSVLQYPDPRLYTVAEPVQQITQDIRRLVADMTQTMYALDGIGLAATQVDVHLQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + +R + I + Y+EGCLS+PD V+R+A+I VR +D + + Sbjct: 61 IDVSEKQNRL---QVLINPTIVKMGGKAEYEEGCLSVPDVFESVRRAAWIHVRALDLDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+GL A C+QHE+DHL G++F++HLS + I +SK + Sbjct: 118 TIDVQAEGLKAMCIQHEMDHLQGMVFVEHLSPTNQRRILNSLSKQSR 164 >gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824] gi|3023622|sp|O05100|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824] gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR +EKI+ ++ LID+M E MY+ DG+GLAA Q+G+L RLVV Sbjct: 1 MAIRSIRKYGDELLRKKSRKVEKIDKRLLTLIDDMFETMYNADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + CLSIP+ + +V+R ++ + ++ + Sbjct: 61 IDVGEG-----PVVLINPEILETSGKAVDVEG-CLSIPERQGEVERPTYVKAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 +I A+ L A + HE DHLNG+LF+D L Sbjct: 115 EIVIEAEDLFARAICHETDHLNGVLFVDKL 144 >gi|260465452|ref|ZP_05812642.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] gi|259029756|gb|EEW31042.1| peptide deformylase [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP+P+LR V+ P++ +SD+ L ++++ M++ GIG+ IG+L RLVV Sbjct: 1 MAVRPIIRFPNPLLRAVAEPVKLFDSDLHGLAGDLVDTMHAAPGIGITGPHIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L P +++NP I+ S + + EG +S+P D++R A I VRY D + Sbjct: 61 IQLP---SAAKPGIYVNPSIVHASTEMIRHAEGSVSMPGVTEDIERHARIIVRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q ADGLLA C QHE+D L+G+ + L+RLKRD + K+ KL++ Sbjct: 118 EQFENADGLLAVCHQHEIDQLDGLFWTHRLTRLKRDRLVKRYGKLMR 164 >gi|217034160|ref|ZP_03439580.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|216943444|gb|EEC22900.1| hypothetical protein HP9810_868g53 [Helicobacter pylori 98-10] gi|317182103|dbj|BAJ59887.1| peptide deformylase [Helicobacter pylori F57] Length = 175 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|225619787|ref|YP_002721044.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] gi|254767571|sp|C0QZQ2|DEF_BRAHW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225214606|gb|ACN83340.1| N-formylmethionyl-tRNA deformylase [Brachyspira hyodysenteriae WA1] Length = 187 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L++VS IEKI+ +I+ LID+M E MY G+GLAAVQIGVL RLVVI Sbjct: 1 MLRELVIYGDERLQKVSEKIEKIDDEILTLIDDMFETMYKERGVGLAAVQIGVLKRLVVI 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + P INP+II +D+ +EGCLS P+ R DV R I V+Y+D Sbjct: 61 SVPDFDDEEKPDFKLALINPEIIWHNDETESLEEGCLSFPEIRDDVARYTQIKVKYLDRE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 QI+ A+ +A LQHE+DH NGI FID L ++ + +++ +L Sbjct: 121 GNEQILDAENYIAKVLQHEIDHTNGISFIDRLESYQKRRLKRELKELRNN 170 >gi|170781748|ref|YP_001710080.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] gi|169156316|emb|CAQ01464.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus] Length = 163 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ VS I +I+ + L++++L+ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTVSSEIHEIDDGVRALVEDLLDSVRPDGRAGVAAAQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP I + + EGCLS+P R + +D + + Sbjct: 61 YNVGPAFG-----YVLNPVIEELRGEAVLVDEGCLSVPGLWFPTMRHPEAVISGLDLDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I G+LA QHE+DHL+G++++D L + +R K++ + Sbjct: 116 PVRIEGTGVLAQAFQHEVDHLDGLVYLDRLDKQRRREAMKQVRE 159 >gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501] Length = 145 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++P++++ LI NM + MY G+GLAA QIG+ R++V Sbjct: 1 MAVLSIRTIGDPVLRTEAKPVDEVTEKTEGLIKNMQDTMYDASGVGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + + +EGCLSIP+ +V+R+A + V +D + + Sbjct: 61 VDVGEGPLALINPEIVES------SGSEIDEEGCLSIPNENGNVERAARVVVDALDSDGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A+GLLA LQHE+DHL GILF+D + Sbjct: 115 EVEIEAEGLLARVLQHEIDHLEGILFVDKVE 145 >gi|258515528|ref|YP_003191750.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257779233|gb|ACV63127.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 164 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DP+LR+ + P++ INS I L+ NM + MY G+GLAA QIG+ R+VV Sbjct: 1 MAIYNIVEVGDPVLRQKANPVKNINSSIHKLLKNMADTMYDAKGVGLAAPQIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + I + EGCLSIP V R++ I V+ ++ N + Sbjct: 61 VDIGEGLLE------LINPRIIKASGQETDTEGCLSIPGTLGQVPRASKIQVQALNRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G +A +QHELDHL+GILFID L++ + + + Sbjct: 115 QVEYHVKGFMARAVQHELDHLDGILFIDKAESLRKQFEDVVLENKAKAK 163 >gi|319950533|ref|ZP_08024443.1| peptide deformylase [Dietzia cinnamea P4] gi|319435783|gb|EFV90993.1| peptide deformylase [Dietzia cinnamea P4] Length = 184 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +F DP+LR + P+ + + + ++++ + +G GLAA QIG+ R+ V Sbjct: 1 MPVHPVRLFGDPVLRTAADPVTSFDDRLARTVTDLMDTVAHEEGAGLAAPQIGLSTRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +NP+ ++ + EGCLSIP +R A + R D Sbjct: 61 YTCGGRRG-----HLVNPEWEAIGNETTEVNEGCLSIPGVSMPTERFARVRARGFDMKGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A+G+LA +QHE+DHL+G+LF+ L+ +R ++ Sbjct: 116 PVSFEAEGILARAVQHEIDHLDGVLFLQRLTPERRRAAMAEIR 158 >gi|88704771|ref|ZP_01102484.1| Peptide deformylase [Congregibacter litoralis KT71] gi|88701092|gb|EAQ98198.1| Peptide deformylase [Congregibacter litoralis KT71] Length = 169 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR S + + + + ++++ E + + IGL+A Q G+ R++V Sbjct: 1 MAILDIIEVPDERLREHSEAVSRFDEALQQQVNDLFETLGHSGAIGLSAPQTGIFKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D I +E CLS+P +V R + +R D + + Sbjct: 61 VHVPDDDFGAR---VYINPEILKRSKSRYVEESCLSVPGIEGNVVRCIRVKLRAQDIHGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D L A C+QHE+DHL+GILF D LS K+ + Sbjct: 118 LCEFDVDDLHAVCVQHEVDHLDGILFTDRLSWFKKLRLR 156 >gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 159 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 75/155 (48%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPM 73 ++++ PI ++ ++ L D+ML MY GIGLAA QIGVL RL+V+D ++ P+ Sbjct: 2 KKIATPIVDLSDELRVLADDMLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPV 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 NP+I SD+ SVY EGCLSIP+ A+V R A ++VR+M + DGL ATC Sbjct: 62 AMFNPEITASSDELSVYDEGCLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATC 121 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +QHE+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 122 VQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 156 >gi|297621379|ref|YP_003709516.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] gi|297376680|gb|ADI38510.1| polypeptide deformylase [Waddlia chondrophila WSU 86-1044] Length = 174 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K L + DP LR+ +P+E+IN++I L++NM+E + +GIGLAA QI RL + Sbjct: 1 MKLELAYYGDPFLRKKCKPVEEINNEIRELVENMVETLVEYNGIGLAAPQIKQDLRLFIT 60 Query: 62 DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + +VFINP+I+++S++ QEGCLSIP +V R I ++ D Sbjct: 61 AVPKELPNGDWEQGELIVFINPEIVSYSEETEDRQEGCLSIPKLYGNVNRPVRIVIKATD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 +GL A C HE DH+NG+L+ID + +R ++ K+ ++ + Sbjct: 121 MEGNVFERKFEGLQARCCLHENDHINGVLYIDRIRGKERKLLEPKLREIKK 171 >gi|258647932|ref|ZP_05735401.1| peptide deformylase [Prevotella tannerae ATCC 51259] gi|260851771|gb|EEX71640.1| peptide deformylase [Prevotella tannerae ATCC 51259] Length = 185 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V++ IE + LI++M E M +DG+GLAA QIG R++VI Sbjct: 1 MILPIYTYGQPVLRKVAQDIEADFPGLEQLIEDMYETMDKSDGVGLAAPQIGKAIRVIVI 60 Query: 62 ------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + I + S +EGCLS+P VKR I V+Y Sbjct: 61 SLDVLKEDFPEYAGFRHAYINPHIIEFDDSEISTLEEGCLSLPGIHEPVKRPTRIHVQYR 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + + +G LA +QHE+DHL G +F D +S L++ M+ K++ + + + Sbjct: 121 DENFEPHDEWVEGYLARVMQHEIDHLEGHVFTDRISPLRKQMVKNKLNAIRKGK 174 >gi|224539752|ref|ZP_03680291.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] gi|224518630|gb|EEF87735.1| hypothetical protein BACCELL_04661 [Bacteroides cellulosilyticus DSM 14838] Length = 184 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I + LI NM E M +G+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDITPDYPGLKELIANMFETMDHAEGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +INP I+ S + +EGCLS+P VKR I V YMD Sbjct: 61 DLDVLSEDYPEYKNFRKAYINPHILEVSGEEISMEEGCLSLPGIHESVKRGNRIHVTYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENMVEHDEVVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|319760357|ref|YP_004124295.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] gi|318039071|gb|ADV33621.1| peptide deformylase [Candidatus Blochmannia vafer str. BVAF] Length = 168 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 89/168 (52%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+ ++ + KI+ +I +M + MY+ GIGLAA Q+ + +++V Sbjct: 1 MSILKILHYPDKRLRKTAKFVSKISKHTKRIIFDMFDTMYAQQGIGLAATQVDIDQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + II EGCLSIP + + RS I VR ++ + Sbjct: 61 I---DLYQNITQRLVFINPIIIKKIGIIHTVEGCLSIPKIKESIPRSKQIIVRSLNQDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I A LL+ C+QHE+DHL G LFID+LS LK I KK+ K +L Sbjct: 118 IFEITATDLLSVCIQHEIDHLLGKLFIDYLSPLKIKRINKKIQKWTKL 165 >gi|302346308|ref|YP_003814606.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] gi|302150701|gb|ADK96962.1| peptide deformylase [Prevotella melaninogenica ATCC 25845] Length = 186 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60 Query: 62 DL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL + + +EGCLS+P V R+ + V++ Sbjct: 61 DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGVHESVTRAKRVYVKWY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL G +F D LS ++ MIT K+ L+Q + Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMITSKLKALLQGK 174 >gi|254510887|ref|ZP_05122954.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] gi|221534598|gb|EEE37586.1| peptide deformylase [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I DI + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRTCLPWPDKRLRTKAGDVTEITDDIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+I+ S + ++E ++P A VKR +TV++++ Q Sbjct: 61 VDGSTERGKAV--RLANPEILHSSVELREHEEASPNLPGVSAKVKRPRAVTVKFLNEQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K K Sbjct: 119 IDHRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKKQ 163 >gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301] gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9301] Length = 201 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 31 LDIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDV 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + Sbjct: 91 NFEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLA C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189 >gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 200 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 78/158 (49%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P LR S P+ + + ++ I M +MY +GIGLAA Q+ + Y+ ++++ Sbjct: 3 IVPYPHPALRYPSVPVTRFDDELRGQIQAMFALMYENEGIGLAANQVALPYQFFILNISG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + I + +EGCLS P V R I VR D + Sbjct: 63 NPEQTELEQVFINPQILRKQATAQDEEGCLSFPGLHGKVLRPRRIKVRAWDQYGVPFELE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 AD LLA +QHE DHL+G LFID S L R +KK+ Sbjct: 123 ADELLARAIQHEWDHLHGRLFIDKFSTLGRINASKKLK 160 >gi|254796760|ref|YP_003081596.1| peptide deformylase [Neorickettsia risticii str. Illinois] gi|254590005|gb|ACT69367.1| peptide deformylase [Neorickettsia risticii str. Illinois] Length = 205 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 67/170 (39%), Positives = 102/170 (60%), Gaps = 13/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M LVI PDPIL +VS + ++ + +D+MLE MY GIGLAAVQ+GVL R++V Sbjct: 21 MALLKLVIEPDPILHKVSGNVVGVSDEKREFLDDMLETMYHYTGIGLAAVQVGVLERIIV 80 Query: 61 IDLQDHAHRKN-------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 +D+ + P +NP+II FS + EGCLS+P+ ++ R Sbjct: 81 VDVPPDKEWHSSPLNHVGYESSGGPYYLVNPEIIEFSRNLVSADEGCLSLPEQNYEIVRP 140 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + V+Y++ N + ++ A+G LA C+QHE+DHL+G L++ HLS+LK D+ Sbjct: 141 DAVVVKYLNYNGEECLLKANGWLARCIQHEVDHLDGKLYVSHLSKLKYDL 190 >gi|308062113|gb|ADO04001.1| peptide deformylase [Helicobacter pylori Cuz20] Length = 175 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +DNM E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDNMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601] gi|158513947|sp|A2BNK7|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str. AS9601] Length = 201 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ S+ I K++ I L ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 31 LDIYKLGDDVLRQNSKRITKVDESIRKLAREMLQSMYAAKGIGLAAPQIGINKELLVIDV 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I F + Y+EGCLSIP +V R + I +++ D + + Sbjct: 91 NFEDSAAEPLILINPEITDFGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLA C+QHE+DHLNGILF+D ++ +D + K++ K Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTS--KDDLNKELLK 189 >gi|254465693|ref|ZP_05079104.1| peptide deformylase [Rhodobacterales bacterium Y4I] gi|206686601|gb|EDZ47083.1| peptide deformylase [Rhodobacterales bacterium Y4I] Length = 165 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I ++ + ++M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRTCLPWPDKRLRTKAEEVTEITDEVREIWNDMVDTMEAMPGVGLAANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S + + E ++P A +KR +TVRY++ Sbjct: 61 VDGSAERGRAVK--LANPEILHASIELREHDEASPNLPGVSAKIKRPRAVTVRYLNEQGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLIRKAKKL 163 >gi|188527363|ref|YP_001910050.1| peptide deformylase [Helicobacter pylori Shi470] gi|238691921|sp|B2UT38|DEF_HELPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188143603|gb|ACD48020.1| peptide deformylase [Helicobacter pylori Shi470] Length = 175 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMRETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008354|sp|Q8K975|DEF_BUCAP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 167 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 94/156 (60%), Gaps = 3/156 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++P+EKI +I + +NM++ MY +GIGLAA Q+ + +++V Sbjct: 1 MSVLKILHYPDQRLRLIAKPVEKITKEIYKITNNMIDTMYQEEGIGLAATQVNIQLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I H + + I +EGCLSIP+YRA V R +I ++ ++ N Sbjct: 61 IH---KIHAIEKNLILINPKIIEKKGSISIEEGCLSIPEYRAFVPRFNYIKIQAINLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 I AD +L+ C+QHE+DHLNG LFID+LS LKR+ Sbjct: 118 TVEIEADSILSICIQHEIDHLNGKLFIDYLSELKRE 153 >gi|307722030|ref|YP_003893170.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] gi|306980123|gb|ADN10158.1| peptide deformylase [Sulfurimonas autotrophica DSM 16294] Length = 174 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K +V +PD LR+ S +++ ++ + L+D M +M +T+GIGLAA+Q+ R +++ Sbjct: 1 MKLNIVEYPDKTLRKKSCEVKEFDASLHKLLDAMNPLMINTNGIGLAAIQVAYPIRALIL 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ D + P + ++T + YQEGCLS+P + D+KR + + Y D Sbjct: 61 NVPDEDGEQPPENLLEIINPVMTHKSGETTYQEGCLSVPQFYEDIKRYDNVVINYQDRYG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + ADGLLA +QHE+DHL GILFID LS +R K+ ++ + + Sbjct: 121 NTKTLDADGLLAIAIQHEMDHLEGILFIDKLSYARRKKFEKEYKRMQKEK 170 >gi|325852042|ref|ZP_08171125.1| peptide deformylase [Prevotella denticola CRIS 18C-A] gi|325484598|gb|EGC87514.1| peptide deformylase [Prevotella denticola CRIS 18C-A] Length = 214 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 29 MVLPIYTYGQPVLRKVAADIPLDYPDLQELIRNMFETNTASDGVGLAAPQIGKSIRVVVI 88 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + +EGCLS+P V R+ I V+Y+ Sbjct: 89 DLDVLSDTFPEYKDFRHAFINGHILELDDSETDTMEEGCLSLPGIHESVTRARRIHVKYL 148 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL+G +F DHLS +R MI+ K+ L+Q + Sbjct: 149 DENLTEHDEWVDGYLARVIQHEFDHLDGRVFTDHLSAFRRQMISGKLKALLQGK 202 >gi|134094837|ref|YP_001099912.1| peptide deformylase [Herminiimonas arsenicoxydans] gi|133738740|emb|CAL61787.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 177 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 102/164 (62%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ +PD L +V++ + ++++ I L+++M + MY+ DGIGLAA Q+ V R+++ Sbjct: 1 MSKLAILQYPDERLHKVAQAVTQVDAGIRRLVEDMAQTMYAADGIGLAATQVNVHLRVIL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + + + + + +EGCLS+PD VKR+A+I +R +D N + Sbjct: 61 VDISEDRSQL---LVMINPEVIKMGGSAECEEGCLSVPDVYEKVKRAAWIRLRALDINGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL A C+QHELDHL G++F++HLS L + I ++K Sbjct: 118 PFEVQADGLKAMCIQHELDHLQGMVFVEHLSPLNQARILSTLAK 161 >gi|302386506|ref|YP_003822328.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197134|gb|ADL04705.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P+++I I L+++M E MY ++G+GLAA Q+GVL ++VV Sbjct: 1 MAIRKIRTIGDEILRKQCKPVKEITPRITELVEDMFETMYDSNGVGLAASQVGVLKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D V INP+I+ + + CLS+P V R ++ ++ D + + Sbjct: 61 IDVEDGNQ----YVLINPEILETRGSQTGPEG-CLSVPGKSGTVTRPEYVRIKAYDASME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA + HE DHLNG L++D + Sbjct: 116 PYELEGEGLLARAICHECDHLNGDLYVDKVE 146 >gi|229489380|ref|ZP_04383243.1| polypeptide deformylase [Rhodococcus erythropolis SK121] gi|229323477|gb|EEN89235.1| polypeptide deformylase [Rhodococcus erythropolis SK121] Length = 212 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 35 TAQPIIRWGTPVLHTPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 94 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP Y EGCLS+P D+ R F T R D Sbjct: 95 DCTDEVGTQRTGVVCNPVVDLPEGVDRQLVDYCEGCLSLPGAYTDLARPDFSTCRGNDQY 154 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 155 GNPIEITAGGTLGRCFQHEADHINGIVFGDRLPTRKRKQLYR 196 >gi|226305513|ref|YP_002765473.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184630|dbj|BAH32734.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 188 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ + P+L +RP+ + SD+ +L+ +M + G GLAA QIGV + + Sbjct: 11 TAQPIIRWGTPVLHAPARPVTEFGSDLQDLLADMFATNTAAHGAGLAAQQIGVDLAVFIY 70 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP EGCLS+P D+ R F T R D Sbjct: 71 DCTDEVGTQRTGVVCNPVVDLPEAVDRQLVDDCEGCLSLPGAYTDLARPDFSTCRGNDQY 130 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 I A G L C QHE DH+NGI+F D L KR + + Sbjct: 131 GNPIEITAGGTLGRCFQHETDHINGIVFGDRLPTRKRKQLYR 172 >gi|46199964|ref|YP_005631.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8] gi|1169265|sp|P43522|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81678630|sp|Q5SLH2|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81699227|sp|Q72H33|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus] gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus thermophilus HB27] gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8] Length = 192 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 23/189 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59 Query: 62 DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 V NP I + Y +V R+ I Sbjct: 60 VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPRAERI 119 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MIT 159 V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ Sbjct: 120 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQ 179 Query: 160 KKMSKLVQL 168 K+ L++ Sbjct: 180 KEARALLKE 188 >gi|196234527|ref|ZP_03133350.1| peptide deformylase [Chthoniobacter flavus Ellin428] gi|196221407|gb|EDY15954.1| peptide deformylase [Chthoniobacter flavus Ellin428] Length = 187 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 14/181 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL--- 58 + +V + +P+LR R ++ ++ I L +MLE M + +G+GLAA QIGV ++ Sbjct: 1 MILEIVKYGNPVLREKGREVKDVDEKIKQLSVDMLETMRAANGVGLAAQQIGVPIQMTVI 60 Query: 59 -----------VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + I+ ++ ++ + + ++ FS++ EGCLS PD A++ RS Sbjct: 61 DVAGIEDRPSAMWINDKEVPIEEHMPLVLLNPVLKFSEEKESGNEGCLSFPDITAEITRS 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + + + A GLLA LQHE DHL+G+LFID ++ + I+ K+ +L + Sbjct: 121 SGVQCTATLLDGKKIEFEAAGLLARALQHETDHLHGVLFIDRMNAATKAGISGKLKRLQK 180 Query: 168 L 168 Sbjct: 181 E 181 >gi|115379822|ref|ZP_01466890.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|310817741|ref|YP_003950099.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115363181|gb|EAU62348.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309390813|gb|ADO68272.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 5/168 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+P +L ++P+ + L+ M E M GIG+AA Q+GV R+ ++ Sbjct: 1 MARDIVIWPHKVLTSATQPVMDFGPALEKLLAEMAESMAEAKGIGIAANQVGVSLRVALV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +D + + + + +EGCLS+P+ V R + VRY D Q Sbjct: 61 GREDGTFFEIVNPQLLERSGKVTL-----EEGCLSVPEEWEKVPRFEKVKVRYQDKAGQW 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+G LA QHE+DHL+G +F+DHLS LKR +I ++M+KL + + Sbjct: 116 HETEAEGRLAHVFQHEIDHLDGHVFVDHLSNLKRTLIRERMNKLQKSQ 163 >gi|85700133|gb|ABC74516.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSVLKRKKFEKELKELQKKQ 171 >gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 164 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + I S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150 +I GLLA QHE+DHLNG+LF D + Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|294673344|ref|YP_003573960.1| peptide deformylase [Prevotella ruminicola 23] gi|294473242|gb|ADE82631.1| peptide deformylase [Prevotella ruminicola 23] Length = 186 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ IF P+LR+V+ I + +LI +M E + ++GIGLAA QIG RLVVI Sbjct: 1 MILPIYIFGQPVLRKVAEDITPDYPQLKDLIGDMWETLAESEGIGLAAPQIGKPIRLVVI 60 Query: 62 DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL + + + V +EGCLSIP V R I V + Sbjct: 61 DLDVLSDDLPEYKGFKQVFINAHIVEYDESNTDVSEEGCLSIPAIHEKVTRPTRIHVEWD 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N +H + +G LA +QHE DHL+G +F+D +S L++ +I K+ L Q R Sbjct: 121 DENFEHHDEWVEGYLARVMQHEFDHLDGKMFVDRISPLRKQLIKSKLRALTQGR 174 >gi|261837976|gb|ACX97742.1| polypeptide deformylase [Helicobacter pylori 51] gi|317177377|dbj|BAJ55166.1| peptide deformylase [Helicobacter pylori F16] gi|317180556|dbj|BAJ58342.1| peptide deformylase [Helicobacter pylori F32] Length = 175 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|182677516|ref|YP_001831662.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633399|gb|ACB94173.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 165 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 4/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FPDP L ++ +E + + L D+++E +++ GIG+ A IGV RLV Sbjct: 1 MAVRPVIRFPDPRLSMAAQKVEHFDETLRTLADDLVESLHAAHGIGITAPHIGVPARLVA 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + R +NP+II SD +QEG +S+P V+R A I VRY D + Sbjct: 61 LELTPNQTRLY----VNPEIIWSSDTKIRHQEGSVSMPGVTEIVERCAEIHVRYQDLDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ADG LA C QHE+D L+G+ +I LSRLKR+ + K+ KL R Sbjct: 117 VHIEKADGFLAICHQHEIDQLDGLFWIQRLSRLKRERVIKRYEKLASDR 165 >gi|91216549|ref|ZP_01253515.1| peptide deformylase [Psychroflexus torquis ATCC 700755] gi|91185343|gb|EAS71720.1| peptide deformylase [Psychroflexus torquis ATCC 700755] Length = 196 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+L++ + I K + I L++NM E MY+ G+GLAA QIG+ RL ++ Sbjct: 1 MILPIAAYGSPVLKKKAEDISKDHPKIDELLENMFETMYNASGVGLAAPQIGLSIRLFIV 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + + VFINP+II + + EGCLSIPD D+ R Sbjct: 61 DAKPFSEDESLSELEKNELEAFKRVFINPQIIEENGIEWDFNEGCLSIPDVHEDIFRKPE 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ITV Y+D N Q GL A +QHE DH+ G+LF D +S LK+ +I K++ + + + Sbjct: 121 ITVEYLDENFTPQKEKLSGLAARVVQHEYDHIEGVLFTDRISSLKKRLIKNKLTNISKGK 180 >gi|300858540|ref|YP_003783523.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] gi|300685994|gb|ADK28916.1| polypeptide deformylase [Corynebacterium pseudotuberculosis FRC41] Length = 169 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 1/159 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+L + + + ++ NL+ +MLE M + G+GLAA Q+GV R+ Sbjct: 1 MTIRDIRFFGDPVLTMRADEVTVFDKNLENLVTDMLETMDAAGGVGLAANQVGVTKRVF- 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + H INP +D + EGCLSIPD + D R + V D + Sbjct: 60 VYDCSHIEDGLRGHIINPVWEPIGEDTQLGPEGCLSIPDIQEDTTRFETVKVTGQDVRGK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A GL++ C+QHE DHL+G+LF+ L + R Sbjct: 120 TFSMVASGLMSRCIQHETDHLDGVLFLKRLDKEHRKDAM 158 >gi|207091735|ref|ZP_03239522.1| peptide deformylase [Helicobacter pylori HPKX_438_AG0C1] Length = 175 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELSKN 170 >gi|167763509|ref|ZP_02435636.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] gi|167698803|gb|EDS15382.1| hypothetical protein BACSTE_01883 [Bacteroides stercoris ATCC 43183] Length = 184 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L+R MI K++ +++ + Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRRQMIKGKLNAMLKGK 173 >gi|163738221|ref|ZP_02145637.1| peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388837|gb|EDQ13190.1| peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 165 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 92/166 (55%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 VDGSSERGRAV--RLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDKLSKVKRDMLIRKAKKLS 164 >gi|307322251|ref|ZP_07601618.1| peptide deformylase [Sinorhizobium meliloti AK83] gi|306892102|gb|EFN22921.1| peptide deformylase [Sinorhizobium meliloti AK83] Length = 172 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ FP P+L + I + + L D++++ M + GIG+ A IG+L RL V Sbjct: 1 MAVRPIIRFPSPLLTTSAERIGRFGGTLRQLSDDLVDTMRAAPGIGITASHIGILQRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I++ P F+NP+I+ S + + + EG +S+P +V+R + + + + + Sbjct: 61 IEVDPQMG---PRSFVNPEIVWQSSETARHSEGSVSMPGVAEEVERPVRVRISFQTLDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+GL+A CLQHE+D LNGI +I LSRLKR+ K+ K + Sbjct: 118 TREEEAEGLMAVCLQHEIDQLNGIFWIRRLSRLKRERAVKRFEKFNR 164 >gi|85700129|gb|ABC74514.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|325068970|ref|ZP_08127643.1| peptide deformylase [Actinomyces oris K20] gi|326773171|ref|ZP_08232454.1| peptide deformylase [Actinomyces viscosus C505] gi|326636401|gb|EGE37304.1| peptide deformylase [Actinomyces viscosus C505] Length = 163 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR I I+ + L++++LE + GLAA QIG+ R Sbjct: 1 MAYRDIRIIGDPILRTECDWITDIDDSVKALVEDLLETVDEDGRAGLAANQIGIGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + D++ EGCLS+P +R+ + +D + + Sbjct: 61 WNIDGEIG----YILNPKIVEVSKDEYQDGDEGCLSVPGLWFPTERAWYARAEGVDLDGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+A C+QHE DHL G L++D L R R K++ Sbjct: 117 EVVVEGEELMARCIQHECDHLEGHLYLDRLDRKNRAKAMKELR 159 >gi|289209646|ref|YP_003461712.1| peptide deformylase [Thioalkalivibrio sp. K90mix] gi|288945277|gb|ADC72976.1| peptide deformylase [Thioalkalivibrio sp. K90mix] Length = 178 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 92/173 (53%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ P LRRV P+ + + + L+D++++ M++++G+GLAA QIGV +R Sbjct: 1 MSVRRILRMGHPDLRRVCDPVPESDFDSPGLHALVDDLVDTMHASEGLGLAAAQIGVPHR 60 Query: 58 LVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + VI++Q R + +NP + Y EGCLS+P R +V R I Sbjct: 61 VAVIEIQPGNTRYPGAVPTGRLALVNPVVTVLDPTPQRYWEGCLSVPGLRGEVARPRHIA 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V Y + + + + +G LAT QHE+DHL+G LFID ++ R + + Sbjct: 121 VDYHEPDGTPRHLEPEGFLATVFQHEIDHLDGTLFIDRVTDTTRLAFLDEYRE 173 >gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 183 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 88/150 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 13 LEIHTLGDAVLRTPARRISKVDEAVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDL 72 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 PMV INP+I +F Y+EGCLSIP +V R + V + D + Q Sbjct: 73 DPDNPATPPMVLINPEIRSFGGSLDTYEEGCLSIPGVYLNVVRPTAVEVSFRDEMGRPQK 132 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 + DGLLA C+QHE+DHLNG+LF+D ++ Sbjct: 133 LRTDGLLARCIQHEMDHLNGVLFVDRVTDE 162 >gi|308182949|ref|YP_003927076.1| peptide deformylase [Helicobacter pylori PeCan4] gi|308065134|gb|ADO07026.1| peptide deformylase [Helicobacter pylori PeCan4] Length = 175 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIIYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|224283170|ref|ZP_03646492.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|311064448|ref|YP_003971173.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140319|ref|ZP_07802512.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] gi|310866767|gb|ADP36136.1| Def Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132829|gb|EFR50446.1| peptide deformylase 2 [Bifidobacterium bifidum NCIMB 41171] Length = 162 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPSVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160 >gi|291301355|ref|YP_003512633.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] gi|290570575|gb|ADD43540.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728] Length = 173 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 2/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +L R R + + ++ L+D+M MY+ +G+GLAA QIGV R+ VI Sbjct: 8 TVHDIVYHGTEVLHRRCRTVTDFDDELARLVDDMFASMYAANGVGLAANQIGVDARVFVI 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D +D + +NP + + EGCLS+P ADV R+ TV D Sbjct: 68 DCRDDDGGRLYGHIVNPTLREEPPPRELNVGPEGCLSVPGQYADVARTQTATVDGFDKTG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + + G A CLQHE DHLNGI+++D L + R + + Sbjct: 128 KPITLTSTGEAARCLQHETDHLNGIVYVDKLPKKIRKRLLAE 169 >gi|49089809|gb|AAT51863.1| peptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122] gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122] Length = 187 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 88/156 (56%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ +PDP LR+V + + + L M + MY+ +G GLAA Q+GVL RL+VID Sbjct: 11 LEVLAYPDPTLRQVCEDCDPADKSLRKLARRMAKTMYADNGCGLAAPQVGVLKRLIVIDC 70 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + KNP+ +NP +I V +EGCLS+P ++R A+ VRY D N + I Sbjct: 71 DQDSGAKNPITLLNPTVIETRGPEVVEEEGCLSVPGITVPIRRPAYAIVRYTDLNGEDWI 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I DGLLA CLQHE+DHLNGI + +R Sbjct: 131 IEGDGLLARCLQHEIDHLNGITLFESCDLNERIKAM 166 >gi|183601693|ref|ZP_02963063.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683774|ref|YP_002470157.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190808|ref|YP_002968202.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196214|ref|YP_002969769.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219299|gb|EDT89940.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219621424|gb|ACL29581.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249200|gb|ACS46140.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250768|gb|ACS47707.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793797|gb|ADG33332.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 160 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V + EGCLS+P KR+ + VR MD + Sbjct: 61 YNIDGKIGYVLNPVLEETRGE------QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ DG++ LQHE DHL+G L+ID L + Sbjct: 115 EIVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 146 >gi|154487371|ref|ZP_02028778.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] gi|154083889|gb|EDN82934.1| hypothetical protein BIFADO_01221 [Bifidobacterium adolescentis L2-32] Length = 161 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 6/167 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVSLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ V EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKIGYVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + Sbjct: 115 PVVLEGHGIMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRTHRK 161 >gi|239917470|ref|YP_002957028.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281414039|ref|ZP_06245781.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838677|gb|ACS30474.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 213 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 8/175 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P+ ++ +P+L R + +E I+ +I LI++M + G+GLAA Q+GV R+ Sbjct: 1 MASIRPITVYGEPVLHRRAAEVEVIDDEIRELIEDMYVTQDAAHGVGLAASQVGVGLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------RADVKRSAFITVR 113 D N INP + ++R + + Sbjct: 61 TWTFPDSGDAPNVGHVINPVLTHLDKAPREDPHPDEHTEGCLSVPGLGFPLQRPTRVRLS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + A+G A +QHE DHLNG L+++ L K K+ + +L Sbjct: 121 GQRVDGEMFEFEAEGWFARIMQHEYDHLNGTLYVNRLEG-KWQRRWKRAQRAERL 174 >gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 164 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + I S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150 +I GLLA QHE+DHLNG+LF D + Sbjct: 117 ELVITGTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707] Length = 188 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL Sbjct: 1 MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID A V IN + + S++ EGCLS+P V R I V Y Sbjct: 61 VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPESIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|85700137|gb|ABC74518.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 103/171 (60%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+MLE M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMLETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|108563203|ref|YP_627519.1| peptide deformylase [Helicobacter pylori HPAG1] gi|123373755|sp|Q1CT77|DEF_HELPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|107836976|gb|ABF84845.1| polypeptide deformylase [Helicobacter pylori HPAG1] Length = 174 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) In Complex With Actinonin Length = 193 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 59/166 (35%), Positives = 91/166 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167 >gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii str. 17XNL] gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii] Length = 236 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 1/166 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +VI+P+ ILR+ S + + ++ NLI M + MY GIGL+A Q+ + R++V + Sbjct: 60 LKIVIYPNSILRQKSEEVIYFDDNLKNLIRRMFKAMYENKGIGLSAPQVNISKRIIVWNA 119 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + KN VFINP I+ S + EGCLS P+ A V+R A +++ Y D N Sbjct: 120 LYEKRDEKNERVFINPLIVQESAVKNKLIEGCLSFPNIEAKVERPAIVSISYYDINGNKH 179 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G+ A QHE DHLNG+LFID +++ ++ I K+++LV+ Sbjct: 180 LKILKGIHARVFQHEYDHLNGVLFIDRITQTEKQKIKGKLNELVRE 225 >gi|126738019|ref|ZP_01753740.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720516|gb|EBA17221.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 165 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I ++ ++++ M + G+G+ A QIGV+ RL V Sbjct: 1 MSVRPCLPWPDQRLRTAATEVVEITDEVRTTWQDLIDTMEAMPGVGMGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S ++E ++P A +KR +TVRYMD N + Sbjct: 61 VDGSSERGRAV--RMANPEILHASTQLREHEEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH++DHL+G L+ D LS++KRDM+ KK K Sbjct: 119 ITERDFVGIEATSVQHQIDHLDGKLYFDRLSKVKRDMLIKKSKKFS 164 >gi|310287535|ref|YP_003938793.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|309251471|gb|ADO53219.1| Peptide deformylase [Bifidobacterium bifidum S17] Length = 162 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDP+LR I +I + L+ ++L+ + GL+A QIGV R Sbjct: 1 MAIREIRTVPDPVLRTPCETIREITPAVRRLVQDLLDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ ++ EGCLS+P +R+ + VR +D + Sbjct: 61 YNINGKIGYVL------NPVLEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 EVVLEGSGLMGRMLQHETDHLDGHVYLDRLEKTERREALRYMREHA 160 >gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deformylase [Helicobacter pylori] Length = 174 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|260574966|ref|ZP_05842968.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022971|gb|EEW26265.1| peptide deformylase [Rhodobacter sp. SW2] Length = 167 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD L+ V+ P+ +I ++ + +M+E M G+GLAA QIGV+ RL V Sbjct: 1 MTVRRCLPYPDRRLKTVAEPVAEITDEVRAIWADMVETMDDMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + NP+++ S + EG ++P A + R +TVR+++ Q Sbjct: 61 VDCSETRGQAVL--MANPEVLHASGQMREHDEGSPNLPGVSAVISRPRAVTVRFLNAQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + L AT +QH++DHLNG L+IDHLS LKR M+ K K Sbjct: 119 VEERDFVNLWATSVQHQIDHLNGKLYIDHLSPLKRKMLIAKSQK 162 >gi|240113996|ref|ZP_04728486.1| peptide deformylase [Neisseria gonorrhoeae MS11] gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1] gi|240124639|ref|ZP_04737525.1| peptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291] gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11] gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679] Length = 161 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PD L V++P+E+++ I L+ +M E MY + GIGLAA Q+ V R+VV+DL + Sbjct: 2 QYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVVMDLTEDR 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 +I D + Y+EGCLS+P V R+ + V ++ + + AD Sbjct: 62 SEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGEKFTLEAD 118 Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 GLLA C+QHELDHL GI+F++ LS+LK+ I K+ K + Sbjct: 119 GLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 158 >gi|121998191|ref|YP_001002978.1| peptide deformylase [Halorhodospira halophila SL1] gi|121589596|gb|ABM62176.1| peptide deformylase [Halorhodospira halophila SL1] Length = 162 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 4/158 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PDP LR+ S P+E+ + + L+D+M+E M++ IGLAA Q+ V R+VV Sbjct: 1 MATLEILEHPDPRLRQPSAPVERFDQALCELVDDMIETMHARSAIGLAAPQVDVRQRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + IT S +E CLS+P + V+R ++VR D + Sbjct: 61 CCTEPAQAPR----VFINPEITGSSLPGYIEESCLSVPGQQGLVRRPTRVSVRAQDTAGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + L A CL HE+DHL+G LFID L KR I Sbjct: 117 RFHCKLENLDAVCLHHEIDHLDGTLFIDRLPFWKRLKI 154 >gi|116252298|ref|YP_768136.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] gi|115256946|emb|CAK08040.1| putative peptide deformylase [Rhizobium leguminosarum bv. viciae 3841] Length = 164 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 3/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L +++L M + G+G+ A IGV R+ V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTVFDSSLTALAEDLLATMRAAPGVGITAAHIGVFSRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + + NP I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKADGVRL---YFNPHITWFSKETMDHTEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 VHEDGAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163 >gi|325270161|ref|ZP_08136768.1| peptide deformylase [Prevotella multiformis DSM 16608] gi|324987462|gb|EGC19438.1| peptide deformylase [Prevotella multiformis DSM 16608] Length = 186 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VVI Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLPELIQNMFETNTASDGVGLAAPQIGKSVRVVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + +EGCLS+P V R+ I V+Y+ Sbjct: 61 DLDVLSDTFPEYKDFRHAFINGHILELDDSETETMEEGCLSLPGIHESVTRAKRIHVKYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + + DG LA +QHE DHL G +F D LS +R MI+ K+ L+Q + Sbjct: 121 DEHLKEHDEWVDGYLARVIQHEFDHLEGRVFTDRLSAFRRQMISGKLKALLQGK 174 >gi|182440102|ref|YP_001827821.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780771|ref|ZP_08240036.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] gi|178468618|dbj|BAG23138.1| putative polypeptide deformylase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661104|gb|EGE45950.1| peptide deformylase [Streptomyces cf. griseus XylebKG-1] Length = 181 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 71/151 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + L+++M MY+ G+GLAA QIGV ++ V D Sbjct: 13 VREMSLLGDPLLHRPCEDVTDFGPPLAKLVEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTDRFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G A CLQHE DHL G ++ D L+ L Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYTDRLTGL 163 >gi|189466358|ref|ZP_03015143.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] gi|189434622|gb|EDV03607.1| hypothetical protein BACINT_02733 [Bacteroides intestinalis DSM 17393] Length = 184 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M + +G+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRKVAEDIAPDYPNLKELIANMFETMDNAEGVGLAAPQVGLPVRVVVV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +INP I+ S + +EGCLS+P VKR I V YMD Sbjct: 61 DLDVLSEDYPEYKGFRKAYINPHILEVSGEEVSMEEGCLSLPGIHEAVKRGNKIHVTYMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMVEHDEIVEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|237740379|ref|ZP_04570860.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] gi|229422396|gb|EEO37443.1| polypeptide deformylase [Fusobacterium sp. 2_1_31] Length = 174 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 56/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D +L+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDVLKQIAKEVELSEINDEFRKFLDDMVETMYKTDGIGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP I +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VC----EDGTGKIRKLINPVIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 EAVEEIAEELLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693] Length = 174 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + D IL+++++ +E +IN + +D+M+E MY TDGIGLAA Q+GV R+ Sbjct: 1 MVFEIRKYGDDILKQIAKEVELSEINDEFRKFLDDMVETMYETDGIGLAAPQVGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP I +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VC----DDGTGKIRKLINPIIEPLTEETQEFEEGCLSVPGIYKKVERPKKVMLKYINENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LLA +QHE DHLNGILF++ +S + + +I KK++ + + Sbjct: 117 EAVEEIAEDLLAVVVQHENDHLNGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|57168634|ref|ZP_00367766.1| polypeptide deformylase [Campylobacter coli RM2228] gi|305432738|ref|ZP_07401898.1| peptide deformylase [Campylobacter coli JV20] gi|57019915|gb|EAL56595.1| polypeptide deformylase [Campylobacter coli RM2228] gi|304444247|gb|EFM36900.1| peptide deformylase [Campylobacter coli JV20] Length = 175 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 95/163 (58%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+++ + ++ L+D+M + M ++ G+GLAA+Q+ + R +++ Sbjct: 1 MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGVGLAAIQVDIPLRALIV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + INP+II ++ EGCLS+PD+ +V+R I ++Y D Sbjct: 61 NILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDFFEEVERYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + A G LA +QHE DHLNG LFI+ +S LKR K+ Sbjct: 121 GNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKFDKE 163 >gi|313886414|ref|ZP_07820134.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] gi|312924130|gb|EFR34919.1| peptide deformylase [Porphyromonas asaccharolytica PR426713P-I] Length = 188 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DG+GLAA QIG RL Sbjct: 1 MAKTLPIYLYGHPVLRNMSEDITPDYPNLSELIADMWQTMYESDGVGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID A V IN + + S++ EGCLS+P V R I V Y Sbjct: 61 VIDATPLAEEYPECAQLKLVMINAHMQSLSEETCSEPEGCLSLPGINERVVRPKSIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ MI KK+ + + R Sbjct: 121 MNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDHISAMRKRMIKKKLQHIAEGR 175 >gi|298372481|ref|ZP_06982471.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] gi|298275385|gb|EFI16936.1| peptide deformylase [Bacteroidetes oral taxon 274 str. F0058] Length = 185 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 9/177 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ +LR V++PI + +I LIDNM E M + DGIGLAA QIG+ RL VI Sbjct: 1 MILPVYLYGSGVLREVAKPITEDYPNIRELIDNMFETMRNADGIGLAAPQIGLSIRLFVI 60 Query: 62 DLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 D+ +FIN +I D +Y+EGCLSIP V R I + Sbjct: 61 DISPLDTERDFPQLRDCPKQKIFINAEITERYGDTVIYEEGCLSIPKINEKVPRPDKIKI 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +Y+D + +G A +QHE DH++G +F+DH+S L++ +I K++ +V+ + Sbjct: 121 KYLDETFREHEDEFEGYFARVIQHECDHIDGKMFVDHISPLRKQLIKSKLADIVKRK 177 >gi|227496282|ref|ZP_03926578.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] gi|226834207|gb|EEH66590.1| peptide deformylase [Actinomyces urogenitalis DSM 15434] Length = 163 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MAYRDIRIIGDPVLRTQCEWITDIDDSVKQLVEDLLETVDEDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + D++ EGCLS+P KR+ + +D + + Sbjct: 61 WNIDGEIG----YILNPRIDELNFDEYQDGDEGCLSVPGLWYPTKRAWYARATGIDLDGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + L+ C+QHE DHL G L++D L R R K + Sbjct: 117 EVVVEGEELMGRCIQHECDHLEGHLYLDRLDRKNRAKAMKDLR 159 >gi|288802833|ref|ZP_06408270.1| peptide deformylase [Prevotella melaninogenica D18] gi|288334650|gb|EFC73088.1| peptide deformylase [Prevotella melaninogenica D18] Length = 186 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + P+LR+V+ I D+ LI NM E ++DG+GLAA QIG R+VV+ Sbjct: 1 MVLPIYTYGQPVLRKVAEDIPLDYPDLQELIQNMFETNTASDGVGLAAPQIGKSIRVVVV 60 Query: 62 DL------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 DL + + +EGCLS+P V R+ I V++ Sbjct: 61 DLDVLSDTFPEYKDYRHAFINGHILEYDDSETETLEEGCLSLPGIHESVTRAKRIYVKWY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + DG LA +QHE DHL G +F D LS ++ MI K+ L+Q + Sbjct: 121 DENLVEHEEWIDGYLARVIQHEFDHLEGRVFTDRLSAFRKQMINSKLKALLQGK 174 >gi|300871518|ref|YP_003786391.1| peptide deformylase [Brachyspira pilosicoli 95/1000] gi|300689219|gb|ADK31890.1| peptide deformylase [Brachyspira pilosicoli 95/1000] Length = 177 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+ D L+ S +E ++ +I+ LID+M E MY +G+GLAAVQ+GVL R++VI Sbjct: 1 MIRKLVIYGDDRLKEKSSYVENVDEEILTLIDDMFETMYKANGVGLAAVQVGVLKRVIVI 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D P INP+II +D + +EGCLS P +V R I V+Y+D Sbjct: 61 SVPDFDDETKPDFKLALINPEIIWHGEDTEILEEGCLSFPKISDEVARYKEIKVKYIDTE 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + QI+ A +A LQHE+DH NGI FID L ++ + K + +L Sbjct: 121 NKEQILDAKDYIAKVLQHEIDHTNGITFIDRLESYQKRRLKKDLKELRN 169 >gi|149194678|ref|ZP_01871773.1| peptide deformylase [Caminibacter mediatlanticus TB-2] gi|149135101|gb|EDM23582.1| peptide deformylase [Caminibacter mediatlanticus TB-2] Length = 173 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P+ IL+++S+P+E+ +S++ L+D+M E M + +GIGLAA+Q+GV R ++ Sbjct: 1 MAILDIVTYPNKILKQISKPVERFDSELHKLLDDMYETMIAKNGIGLAAIQVGVPIRALL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 IDL D +++ I F D Y EGCLS+PDY +V+R + V++ D Sbjct: 61 IDLGDEEGKQSKDTLIEVINPEFLEWDGSLKYNEGCLSVPDYFDEVERYKKVKVKFFDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + I+ A+ LL+ QHE DHL+G +FI+ L +KR Sbjct: 121 GKEHIVDAEDLLSVAFQHETDHLDGHVFIERLDYIKRKKF 160 >gi|58176979|pdb|1V3Y|A Chain A, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 gi|58176980|pdb|1V3Y|B Chain B, The Crystal Structure Of Peptide Deformylase From Thermus Thermophilus Hb8 Length = 192 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 23/189 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MVYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVA 59 Query: 62 DLQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 V NP I + Y +V R+ I Sbjct: 60 VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGXLSLPGLYSEEVPRAERI 119 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MIT 159 V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ Sbjct: 120 RVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQ 179 Query: 160 KKMSKLVQL 168 K+ L++ Sbjct: 180 KEARALLKE 188 >gi|323344260|ref|ZP_08084486.1| peptide deformylase [Prevotella oralis ATCC 33269] gi|323094989|gb|EFZ37564.1| peptide deformylase [Prevotella oralis ATCC 33269] Length = 187 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 95/175 (54%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I D+ LI +M E + ++DG+GLAA QIG R+ VI Sbjct: 1 MILPIYIYGQPVLRKVAKDITPDYPDLEELIKDMFETLTASDGVGLAAPQIGKSIRVAVI 60 Query: 62 DL-------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ + + + I + + +EGCLSIP V R + I V+Y Sbjct: 61 DLDVLSGELPEYKDFRKAYINPHIIEIDDNSKKEIMEEGCLSIPGIHESVTRPSRIHVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + DG LA +QHE DHL+G +F+D LS ++ M+ K+ L+Q + Sbjct: 121 MDTAFVQHDEWVDGYLARVMQHEFDHLDGTMFVDRLSPFRKQMVNSKLKALIQGK 175 >gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002] gi|238689048|sp|B1XJP0|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002] Length = 187 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 96/171 (56%), Gaps = 8/171 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ +I L ML+ MYS+ GIGLAA Q+GV RL+VID Sbjct: 17 LELHYLGDKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVIDT 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I F ++EGCLSIP DV R I V Y D + + Sbjct: 77 DPENPANAPLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPKR 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-------SRLK-RDMITKKMSKLV 166 I A GLL+ +QHE+DHL+G++F+D + S+LK R K + ++ Sbjct: 137 IKASGLLSRVIQHEIDHLDGVMFVDRVENEIALSSQLKQRGFALKSVQRIA 187 >gi|85375926|gb|ABC70185.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDTKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHREDCLEIINPKWIETGGSIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|320451483|ref|YP_004203579.1| peptide deformylase [Thermus scotoductus SA-01] gi|320151652|gb|ADW23030.1| peptide deformylase [Thermus scotoductus SA-01] Length = 191 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 15/181 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ ++ DP+LR+ +RP++ + L ++MLE M+ G+GLAA QIG+ R V Sbjct: 1 MIYPIRLYGDPVLRKKARPVQDF-QGLKKLAEDMLETMFEARGVGLAAPQIGLSQRFFVA 59 Query: 61 --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADVKRSAFIT 111 + + + + + + + +V R+ I Sbjct: 60 VEYADEPEGEERPLRDLARRIYVVANPVITHREGEVEGLEGCLSLPGLYAEEVPRAERIR 119 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK----KMSKLVQ 167 V Y D + + + +G +A QHE+DHL+GILF + L + KR+ + +++++ + Sbjct: 120 VEYQDEEGRPRALELEGYMARVFQHEIDHLDGILFFERLPKAKREAFLEENRAELARMQK 179 Query: 168 L 168 Sbjct: 180 E 180 >gi|57242491|ref|ZP_00370429.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] gi|57016776|gb|EAL53559.1| polypeptide deformylase [Campylobacter upsaliensis RM3195] Length = 174 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 98/163 (60%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+ L S P+EK + ++ L+D+M E M S+ G+GLAA+Q+ V R+ ++ Sbjct: 1 MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRIFIV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + INP I +D+ V EGCLS+PD+ +V+R+ IT++Y D Sbjct: 61 NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRNRKITLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + + A+ LA +QHE DHL+G LFI+ L KR+ +K+ Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKE 163 >gi|86738737|ref|YP_479137.1| peptide deformylase [Frankia sp. CcI3] gi|86565599|gb|ABD09408.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +P+L R + I + +++ LID+M MY +G+GLAA QI V + V Sbjct: 46 SIRRITVVGEPVLHRPCKKITEFGTAELAALIDDMFTTMYGAEGVGLAANQIDVDAAVFV 105 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D ++ +NP + EGCLS+P +V R VR D Sbjct: 106 YDCTDEDGVRHVGHLVNPVLEEAPPAERRLVKGDEGCLSVPGAYMEVARLEHAAVRGQDQ 165 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + G A CLQHE DHL G L++D LS R ++M + Sbjct: 166 HGAPLRLEGTGYFARCLQHETDHLYGSLYLDRLSSRGRKKALREMEE 212 >gi|325298805|ref|YP_004258722.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] gi|324318358|gb|ADY36249.1| Peptide deformylase [Bacteroides salanitronis DSM 18170] Length = 184 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA Q+G+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAEDITPDYPNLKELIQNMFETMDRADGVGLAAPQVGLPIRVVVV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ +INP I+ + EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLAEDFPEYKDFRRAYINPHILETGGELVSMDEGCLSLPGIHESVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDMNPHDEWVEGYLARVMQHEFDHLEGTMFIDHLSALRKQMIKGKLNAMLKGK 173 >gi|260219440|emb|CBA26285.1| Peptide deformylase 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 179 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + +SD + L+ +ML+ M + +G GLAA QIGV +LV Sbjct: 1 MTVRDILKMGDPRLLRVAQPVTEFDSDALHLLVTDMLDTMRAANGAGLAAPQIGVDLQLV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P V NP I D+ EGCLS+P R V R + I Sbjct: 61 IFGGNERNPRYPDRPIVPPTVLCNPVITPLGDEEENDWEGCLSVPGLRGVVPRWSRIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DH+ G L+ + Sbjct: 121 GFDQYGDAIDRTVDGFHARVVQHECDHVWGKLYPMRVRDF 160 >gi|148977715|ref|ZP_01814276.1| peptide deformylase [Vibrionales bacterium SWAT-3] gi|145963083|gb|EDK28352.1| peptide deformylase [Vibrionales bacterium SWAT-3] Length = 170 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 95/170 (55%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M +P++ PD LR + ++ + S + LID+ML+ +Y +GIGLAA Q+G ++ Sbjct: 1 MAIRPIIEVPDDRLRVTYQIVDDV-STVQTLIDDMLDTLYDTDNGIGLAAAQVGHSEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ ++ + + I + +EGCLS+P A V+R + V+ ++ Sbjct: 60 IIDISENRDQPL---IMINPQIIEHEGLIDSEEGCLSVPGVYAKVQRHQRVKVQALNRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I D LA +QHE+DHL+G +FID+LS LKR M KK+ K + + Sbjct: 117 EAFTIEDDDYLAIVMQHEIDHLHGKIFIDYLSPLKRKMAMKKIKKFQRAK 166 >gi|160889625|ref|ZP_02070628.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270293967|ref|ZP_06200169.1| polypeptide deformylase [Bacteroides sp. D20] gi|317479180|ref|ZP_07938317.1| polypeptide deformylase [Bacteroides sp. 4_1_36] gi|156860617|gb|EDO54048.1| hypothetical protein BACUNI_02051 [Bacteroides uniformis ATCC 8492] gi|270275434|gb|EFA21294.1| polypeptide deformylase [Bacteroides sp. D20] gi|316904668|gb|EFV26485.1| polypeptide deformylase [Bacteroides sp. 4_1_36] Length = 185 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI+NM E M + +G+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKVAEDIAPDYPNLKELIENMFETMDNAEGVGLAAPQIGLPIRVVTI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + ++ +IN I+ S + EGCLS+P VKR I V+Y+D Sbjct: 61 NLDVLSDDLPEYKDFRKAYINAHILEVSGEEVSMDEGCLSLPGIHESVKRGNKIRVQYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N + +G LA +QHE DHL G +FIDHLS L++ MI K++ +++ + Sbjct: 121 ENLEPHDEIIEGYLARVMQHEFDHLEGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.5 gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph6.5 gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans (Lipdf) At Ph7.0 gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans(Lipdf) At Ph8.0 Length = 177 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L ++ Sbjct: 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 60 Query: 59 VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 VV+ +D+ + +NP I + D S + EGCLS+P R V+R I ++ Sbjct: 61 VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +MD DG A QHE DHL GIL++D L K Sbjct: 121 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|317014203|gb|ADU81639.1| peptide deformylase [Helicobacter pylori Gambia94/24] Length = 174 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKQQ 171 >gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 171 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 1/168 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V FP+ IL+R + P++ I+++I +I M E MY DGIGLAA Q+ + ++VID Sbjct: 1 MLEIVTFPNEILKRKTNPVKSIDAEIKEIIKEMKETMYKNDGIGLAANQVNIPLSIMVID 60 Query: 63 LQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + + ++EGCLS P + +V R+ IT++ ++ + Sbjct: 61 TTSREDDQEKFKDVLINPTVLAKEGEIKFKEGCLSFPGLQVEVIRAKEITIKAINECEEE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I+ GL A QHE DHLNGI F+D LS +K+ + +K K+++ + Sbjct: 121 VILNLSGLPAIVFQHEFDHLNGITFLDRLSGIKKRLALEKYQKMLKEK 168 >gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 273 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 89/165 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +PDPILR ++ I + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 83 IVEYPDPILRAKNKRIGVFDQNLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAG 142 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +V +NP I +SD + EGCLS P A+V R + + D + I Sbjct: 143 EPGEGEEIVLVNPIIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSIS 202 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 203 LSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247 >gi|291443077|ref|ZP_06582467.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291346024|gb|EFE72928.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 71/149 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D Sbjct: 37 VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 96 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 97 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 156 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I G A CLQHE DHL G ++ D L+ Sbjct: 157 RIAGTGWFARCLQHECDHLEGTVYPDRLT 185 >gi|239939651|ref|ZP_04691588.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 15998] gi|239986135|ref|ZP_04706799.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 181 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 71/149 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L R + + LI++M MY+ G+GLAA QIGV ++ V D Sbjct: 13 VREMSLLGDPLLHRPCEDVTDFGPSLAKLIEDMFATMYAAQGVGLAANQIGVPLKVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 73 CPDDDDVRHLGHVVNPELVEADGLTVRGPEGCLSLPGLEAGTERFDHAVVEGLTMTGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 I G A CLQHE DHL G ++ D L+ Sbjct: 133 RIAGTGWFARCLQHECDHLEGTVYPDRLT 161 >gi|329924705|ref|ZP_08279720.1| peptide deformylase [Paenibacillus sp. HGF5] gi|328940539|gb|EGG36861.1| peptide deformylase [Paenibacillus sp. HGF5] Length = 172 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGEGLIELINPEIVEMDGE------QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 ETVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|323356569|ref|YP_004222965.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] gi|323272940|dbj|BAJ73085.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum StLB037] Length = 163 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+LR S PIE I+ I L+ ++L+ + G+AA QIGV R Sbjct: 1 MTVRPIRLFGDPVLRAPSAPIETIDDGIHALVRDLLDTVEPPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP ++ + + EGCLS+P + R + V +D + Sbjct: 61 YNIDGDIG-----YVLNPVLVETRGEPQLVGEGCLSVPGLWHEATRYPWAKVVGIDLDGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ +GLLA LQHE DHL+G+L++ L R +++ + Sbjct: 116 EVVLEGEGLLAQALQHETDHLDGMLYLSRLPADTRREAMRQIRE 159 >gi|254881558|ref|ZP_05254268.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] gi|254834351|gb|EET14660.1| peptide deformylase [Bacteroides sp. 4_3_47FAA] Length = 184 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELNEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|261839392|gb|ACX99157.1| peptide deformylase [Helicobacter pylori 52] Length = 175 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ I +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEIVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|261409931|ref|YP_003246172.1| peptide deformylase [Paenibacillus sp. Y412MC10] gi|261286394|gb|ACX68365.1| peptide deformylase [Paenibacillus sp. Y412MC10] Length = 172 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M KP+V F DPILR+++RP++ +N+ ++ ++D+M+E +Y +DG GLAA QIG+L RL+ Sbjct: 1 MTVKPIVPFGDPILRKIARPVDSVNARVLKILDDMVETLYDSDGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + + E CLS P Y VKR+ +TV+ ++ Sbjct: 61 VMDCGEGLIELINPEIVEMDGE------QMGPEACLSYPGYYGYVKRADKVTVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q I+ + LA C+QHE+DHLNGILF+DH+ Sbjct: 115 QTVILKGEDYLARCMQHEIDHLNGILFVDHV 145 >gi|325529284|gb|EGD06233.1| peptide deformylase [Burkholderia sp. TJI49] Length = 177 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E+ + ++ ++ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGVGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPEAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKLDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|329954514|ref|ZP_08295605.1| peptide deformylase [Bacteroides clarus YIT 12056] gi|328527482|gb|EGF54479.1| peptide deformylase [Bacteroides clarus YIT 12056] Length = 184 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDH+S L++ MI K++ +++ + Sbjct: 121 EDLVEHDEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNAMLKGK 173 >gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|256027377|ref|ZP_05441211.1| polypeptide deformylase [Fusobacterium sp. D11] gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11] gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1] gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33] gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA Q+GV R+ Sbjct: 1 MVYEIKRYGEEVLKQIAKEVEFNEINDEFRKFLDDMVETMYETDGVGLAAPQVGVSKRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILF++ +S + + +I KK++ + + Sbjct: 117 EEVEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANIKKE 165 >gi|217032886|ref|ZP_03438363.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298736496|ref|YP_003729022.1| peptide deformylase [Helicobacter pylori B8] gi|216945380|gb|EEC24048.1| hypothetical protein HPB128_152g3 [Helicobacter pylori B128] gi|298355686|emb|CBI66558.1| peptide deformylase [Helicobacter pylori B8] Length = 174 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKWIETGGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031] Length = 186 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D ILR+ ++P++ I+S I LI +M E M + +GIGLAA Q+G RL+V+ Sbjct: 1 MILPINIYSDDILRQKAKPLKGIDSTIEALIASMFESMRNAEGIGLAAPQVGHSVRLLVL 60 Query: 62 D--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D D+ + PMV INP I+ S + +EGCLSIP DV+R A I+++Y D + Sbjct: 61 DLSCIDNYANEKPMVVINPHILAVSGCNVM-EEGCLSIPGVNGDVERPAVISLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G+LA LQHE+DHL+G LF+D + + R I K+++ + Sbjct: 120 LERTREFSGMLARALQHEIDHLDGTLFVDRMEKRSRKKIQKELTDIA 166 >gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] gi|123727935|sp|Q31DB4|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312] Length = 201 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ S+ I K++ I L M++ MY+ GIGLAA QIG+ L+VID+ Sbjct: 31 LEIYKLGDDVLRQNSKRITKVDESIRKLTREMIQSMYAAKGIGLAAPQIGINKELLVIDV 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + Sbjct: 91 NFEDSAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLKFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITK 160 + ADGLLA C+QHE+DHLNGILF+D + LK+++I + Sbjct: 151 MKADGLLARCIQHEMDHLNGILFVDRVTSKDDLKKELIKE 190 >gi|83719851|ref|YP_442547.1| peptide deformylase [Burkholderia thailandensis E264] gi|167581474|ref|ZP_02374348.1| peptide deformylase [Burkholderia thailandensis TXDOH] gi|167619583|ref|ZP_02388214.1| peptide deformylase [Burkholderia thailandensis Bt4] gi|257138756|ref|ZP_05587018.1| peptide deformylase [Burkholderia thailandensis E264] gi|83653676|gb|ABC37739.1| polypeptide deformylase [Burkholderia thailandensis E264] Length = 177 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVESFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSVEYLPPDMEDGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301] gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942] gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301] gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942] Length = 192 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ + +I+ ++ I ML+ MYS DGIGLAA Q+G+ +L+VIDL Sbjct: 19 LDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDL 78 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + P+V INPKI + D QEGCLSIP DV+R + V Y D N + Q Sbjct: 79 ELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQR 138 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161 + ADGLLA C+QHE+DHLNG+LF+D + +RL+ + K Sbjct: 139 LVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDK 177 >gi|328907667|gb|EGG27431.1| polypeptide deformylase [Propionibacterium sp. P08] Length = 200 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 20 ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK---RSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 80 ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NG++F D LS+ R + ++ Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQ 182 >gi|198275233|ref|ZP_03207764.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] gi|198271816|gb|EDY96086.1| hypothetical protein BACPLE_01392 [Bacteroides plebeius DSM 17135] Length = 184 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ ++ I + LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPIYVYGQPVLRQEAQDITPDYPGLKELITNMFETMDRADGVGLAAPQIGLPIRVVVV 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 NLDVLSDDMPEFKDFKRTYINPHILETGGELVSMEEGCLSLPGIHESVKRPDKIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 N Q + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +V + Sbjct: 121 ENMQPHDEWVEGYLARVMQHEFDHLDGTMFIDHLSALRKQMIRGKLNSMVNGK 173 >gi|118594097|ref|ZP_01551444.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118439875|gb|EAV46502.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 165 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PDP L +V++ + ++ LI +M E MY ++GIGLAA Q+ R++V Sbjct: 1 MAILTILTYPDPNLHKVAKRVINVDEVHKKLIKDMAETMYGSNGIGLAATQVNFHERIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + I + Y+EGCLS+P + V+R +I V+ +D + Sbjct: 61 IDISDDKNDLL---TLINPEIIQKEGKQEYEEGCLSVPGFYEAVERFDYIKVQSLDNRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A GLL+ C+QHE+DHL G +F+++LS LK++ I Sbjct: 118 SFEIEAHGLLSVCIQHEMDHLEGKVFVEYLSPLKQNRI 155 >gi|109947463|ref|YP_664691.1| peptide deformylase [Helicobacter acinonychis str. Sheeba] gi|122973308|sp|Q17XD4|DEF_HELAH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|109714684|emb|CAJ99692.1| polypeptide deformylase [Helicobacter acinonychis str. Sheeba] Length = 175 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 100/170 (58%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKFHQQLDDMHETMIASEGIGLAAIQVGLPLRMLL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +++EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGSIMFKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AKVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|312890426|ref|ZP_07749963.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] gi|311297196|gb|EFQ74328.1| peptide deformylase [Mucilaginibacter paludis DSM 18603] Length = 190 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K P++ + DP+LRR + IE I L++NM E MY+ G+GLAA Q+G+ RL V Sbjct: 1 MKYPIIAYGDPVLRRAATNIEPDEYPHIKELVENMFETMYAARGVGLAAPQVGLSMRLFV 60 Query: 61 IDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ID VFIN K++ + + + EGCLSIPD R DV R + + Y Sbjct: 61 IDATPFDDDEPELKDFKKVFINAKVLEETGEEWSFNEGCLSIPDIREDVYRKPVVRLSYY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D N +H GL A +QHE DH+ G LF D LS L++ +I KK++ + + Sbjct: 121 DENWKHHEETFKGLAARVIQHEYDHIEGKLFTDKLSPLRKRLIQKKLTDISKG 173 >gi|87303617|ref|ZP_01086396.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] gi|87281841|gb|EAQ73805.1| Formylmethionine deformylase [Synechococcus sp. WH 5701] Length = 232 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP LR+VSRP+ + +++ LI ++ + M + DG GLAA QI V R+V Sbjct: 10 MAERTVLRLGDPRLRQVSRPVTRFGTPELLALITDLRDTMAARDGAGLAAPQIAVPLRVV 69 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I EGCLS+P R V R I R Sbjct: 70 IFGITVNPRYPEAPPIPETVLINPEITPIDQACDSGWEGCLSVPGLRGQVSRWRRIHYRG 129 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D G A +QHE DHL+G+LF D L + T+++ Sbjct: 130 FDAEGHLIARSVAGFHARVVQHECDHLDGVLFPDRLEDTRALGFTEELE 178 >gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453] gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453] Length = 164 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L + ++ + KI ++ L+D+M + MY DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDADGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D + I S+ EGCLSIP + DV+R+ +TV+ +D Sbjct: 61 IDAGDEHGLIK----MINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI---DHL 150 I+ GLLA QHE+DHLNG+LF D + Sbjct: 117 ELIVTGTGLLARAFQHEIDHLNGVLFTEIADRV 149 >gi|167837046|ref|ZP_02463929.1| peptide deformylase [Burkholderia thailandensis MSMB43] Length = 176 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVETFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGNSERYPEAPPVPETVLVNPGVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|225452422|ref|XP_002276964.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera] Length = 275 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 88/169 (52%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V +PDPILR ++ I + ++ L+D M +VMY TDGIGL+A Q+G+ +L+V Sbjct: 81 APLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 140 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V +NP++ +S ++ EGCLS P ADV+R + + D Sbjct: 141 NPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGCLSFPGIYADVERPESVKIDARDITGAR 200 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 +I GL A QHE DHL G LF D ++ D I + L + + Sbjct: 201 FMINLSGLPARVFQHEFDHLQGTLFFDRMTEEVLDSIHANLQDLERKYE 249 >gi|154149172|ref|YP_001405640.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] gi|153805181|gb|ABS52188.1| peptide deformylase [Campylobacter hominis ATCC BAA-381] Length = 171 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L + S+ +EK + ++ +D+M E M S GIGLAA+Q+G R +VI Sbjct: 1 MILEILTYPNKKLYQKSKKVEKFDDELGKFLDDMYETMISKKGIGLAAIQVGRPIRAIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L D + + + +YQEGCLS+P Y DVKR+ F+ + + + Sbjct: 61 NLVDENDEQKKENLLEIINPEILTQEGEIIYQEGCLSVPGYYEDVKRAEFVKLGFQNRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + + LLA C+QHE+DHL+G LFI+ + KR K+ K ++ + Sbjct: 121 ETKEMEVQELLAVCIQHEIDHLDGHLFIEKIGYNKRKKFDKEFKKHLKEK 170 >gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax SaI-1] gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax] Length = 186 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 1/165 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++PDP+LR+ + + ++ L+ +M VMY + G+GLAA Q+ + R++V + Sbjct: 10 LKIVLYPDPVLRKKCDEVVHFDDNLRTLVRSMFNVMYESKGMGLAAPQVNISRRIIVWNA 69 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++N VFINP I+ S S EGCLS PD V R + +++ Y D + Sbjct: 70 LYEKKKKENERVFINPSIVEPSLVRSKLVEGCLSFPDIEGKVDRPSVVSISYYDLDGNKH 129 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G+ A QHE DHL+G+LFID S+ +R + K++ L++ Sbjct: 130 LKILKGIHARIFQHEYDHLDGVLFIDRFSQSERHKVRAKLNALIR 174 >gi|218130013|ref|ZP_03458817.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|317476772|ref|ZP_07936015.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] gi|217987816|gb|EEC54142.1| hypothetical protein BACEGG_01596 [Bacteroides eggerthii DSM 20697] gi|316906947|gb|EFV28658.1| polypeptide deformylase [Bacteroides eggerthii 1_2_48FAA] Length = 184 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI NM E M DG+GLAA QIG+ R+VV+ Sbjct: 1 MILPVYVYGQPVLRKVAEDITPDYPNLKELIQNMFETMDHADGVGLAAPQIGLPIRVVVV 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +IN I+ S + +EGCLS+P VKR I V+Y+D Sbjct: 61 DLDVLSEDYPEYKGFRKAYINAHILEVSGEEVSMEEGCLSLPGIHESVKRGNKIRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +FIDHLS L++ MI K++ +++ + Sbjct: 121 EDLVEHDEIVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIKGKLNAMLKGK 173 >gi|330995383|ref|ZP_08319293.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] gi|329575878|gb|EGG57402.1| peptide deformylase [Paraprevotella xylaniphila YIT 11841] Length = 185 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 6/173 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F P+LR+V+ I ++ LIDNM E + ++GIGLAA QIG+ RLVVI Sbjct: 1 MVLPIYTFGQPVLRKVAEDITPDYPELKTLIDNMYETLERSEGIGLAAPQIGLSIRLVVI 60 Query: 62 DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 +L + + +EGCLS+P V+R I V Y+ Sbjct: 61 NLDLISDDLPEYKGFVHAFINPHILEYDDAETDSMEEGCLSLPGIHEPVRRPTRIRVSYL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D Q + +G LA +QHE DHL+G +F+DHLS L++ M+ K+ L++ Sbjct: 121 DEVFQPHDEWVEGYLARVMQHEFDHLDGKMFVDHLSMLRKQMVKGKLGNLLKG 173 >gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159] gi|254767609|sp|B9L0C1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159] Length = 176 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 3/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ DP LR+ + I ++ ++ L ++ + + + G+GLAA QIGVL R++V Sbjct: 1 MAVRTIITEGDPRLRQKAIRIRVVDEEVRQLARDLWDTVRAARGLGLAAPQIGVLRRIIV 60 Query: 61 IDLQDHAHRKNPMVFI---NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + + I + V EGCLSIP + +V RS +TV+ +D Sbjct: 61 VAIPPDYVEEGDPGVELTLINPEIVRASGRQVGLEGCLSIPGWYGEVPRSMHVTVKALDL 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + GLLA LQHE+DHL GILF+D + Sbjct: 121 DGREVRVKGSGLLARVLQHEIDHLEGILFVDRIED 155 >gi|212212575|ref|YP_002303511.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010985|gb|ACJ18366.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 170 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVI 61 ++ +PDP L+ ++ +EK + + +ID M E Y+ + + + VI Sbjct: 3 KILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVI 62 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + P+ +N +II S + + + V R+A I VR D + Sbjct: 63 DFSPN--KDQPLCLVNAEIIERSGEHTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL + Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167 >gi|15645412|ref|NP_207586.1| peptide deformylase [Helicobacter pylori 26695] gi|3023623|sp|P56419|DEF_HELPY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2313922|gb|AAD07841.1| polypeptide deformylase (def) [Helicobacter pylori 26695] Length = 174 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|85700147|gb|ABC74523.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNSF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|212691280|ref|ZP_03299408.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|237712291|ref|ZP_04542772.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|237726430|ref|ZP_04556911.1| peptide deformylase [Bacteroides sp. D4] gi|265751999|ref|ZP_06087792.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] gi|212666512|gb|EEB27084.1| hypothetical protein BACDOR_00771 [Bacteroides dorei DSM 17855] gi|229434956|gb|EEO45033.1| peptide deformylase [Bacteroides dorei 5_1_36/D4] gi|229453612|gb|EEO59333.1| peptide deformylase [Bacteroides sp. 9_1_42FAA] gi|263236791|gb|EEZ22261.1| polypeptide deformylase [Bacteroides sp. 3_1_33FAA] Length = 184 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDELPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|194289796|ref|YP_002005703.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424] gi|193223631|emb|CAQ69638.1| putative POLYPEPTIDE DEFORMYLASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 177 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +V+RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPVLEMQSDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D A+G A +QHE DHL GIL+ + Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDF 158 >gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|39930959|sp|Q7NIF5|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 187 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 92/146 (63%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ S+ I IN ++ L ML+ MYS DGIGLAA Q+GV R++V+D+ Sbjct: 19 IHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVDIDP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+V INP I FS D +V QEGCLS+P ADV+R + Y D N + + Sbjct: 79 ENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPVTLE 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 A GLLA C+QHE+DHL+G+LF+D + Sbjct: 139 ATGLLARCIQHEIDHLDGVLFVDRVE 164 >gi|134299560|ref|YP_001113056.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052260|gb|ABO50231.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 152 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D ILR ++P++++ +I L+DNM + MY +G+GLAA QIGV R++V Sbjct: 1 MAIYKIVEIGDEILREKAKPVKEVTPNIHKLLDNMADTMYEANGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + INP+I+ S EGCLS+P+ +V R+ + V+ ++ + Sbjct: 61 VDIGEG-----LIELINPEIVEVSGHTVTDTEGCLSVPNMIGEVSRADKLVVKGLNRKGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A LA QHE+DHL GI+F+D S L++ Sbjct: 116 EVLYRAKDFLARAFQHEIDHLEGIIFVDKASNLRK 150 >gi|163743815|ref|ZP_02151188.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382964|gb|EDQ07360.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 165 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +PD LR + + +I + + L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRPCLPWPDKYLRSRAEEVSEITDETLTLWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID R NP+I+ S ++E ++P A +KR +TVRYMD Sbjct: 61 IDGSSERGRAV--RLANPEILHASVALREHEEASPNLPGVSAKIKRPRAVTVRYMDETGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 G+ AT +QH+LDHLNG ++ D LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQLDHLNGKMYFDKLSKVKRDMLIRKAKKLS 164 >gi|282881719|ref|ZP_06290382.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] gi|281304478|gb|EFA96575.1| peptide deformylase [Prevotella timonensis CRIS 5C-B1] Length = 187 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I ++ LI +M E M ++DG+GLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVI 60 Query: 62 DLQ-------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL ++ + + + I S +EGCLSIP V R I V+Y Sbjct: 61 DLNVLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 MD + Q + +G LA +QHE DHL G +F+D +S ++ +I K+ + Q + Sbjct: 121 MDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQGK 175 >gi|313893407|ref|ZP_07826979.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] gi|313442048|gb|EFR60468.1| peptide deformylase [Veillonella sp. oral taxon 158 str. F0412] Length = 162 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+I + CLS+P Y DV+R ITV+ +D + + Sbjct: 61 V---DDQVGSGLIALINPEITHAEGSQVGPEG-CLSVPGYYGDVERFNKITVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|225022087|ref|ZP_03711279.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305680576|ref|ZP_07403384.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] gi|224945020|gb|EEG26229.1| hypothetical protein CORMATOL_02120 [Corynebacterium matruchotii ATCC 33806] gi|305660107|gb|EFM49606.1| peptide deformylase [Corynebacterium matruchotii ATCC 14266] Length = 201 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI+ P+L + + + + + LID+M E M G+GLAA QIGV R+ V Sbjct: 7 MTVRPIVIYGTPVLHQPTAIVTEPIDTLRELIDDMFETMEKAHGVGLAANQIGVGKRIFV 66 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ------EGCLSIPDYRADVKRSAFITVRY 114 + D + FINP + T + EGCLS+P R+ + V Sbjct: 67 YNCPDDEGVIHRGCFINPVLETSDIPEGMPAVDGSDDEGCLSLPGLSFPTGRATWAKVTG 126 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ N + G LA C QHE+ HL+G ++ D L + KK K Sbjct: 127 LNENGEEVSEEGTGFLARCFQHEVGHLDGFVYADVLQG-RWKRAGKKAIK 175 >gi|170692137|ref|ZP_02883300.1| peptide deformylase [Burkholderia graminis C4D1M] gi|170142567|gb|EDT10732.1| peptide deformylase [Burkholderia graminis C4D1M] Length = 177 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160 >gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41q Mutant In Complex With Actinonin Length = 193 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 90/166 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDQIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167 >gi|317133049|ref|YP_004092363.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] gi|315471028|gb|ADU27632.1| peptide deformylase [Ethanoligenens harbinense YUAN-3] Length = 160 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +LR+ SR + + + L+D+M + + DG+GLAA Q+G+L R VV Sbjct: 1 MAIRKIVTVGDDVLRKKSRVVTVFDQKLHLLLDDMRDTLLQADGLGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + D I + EGCLSIP KR A +T+R D N Sbjct: 61 IRIGDEFVDFVNPEIIAAEGE------QQELEGCLSIPGKWGITKRPAKVTIRAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +GLLA HE DHL+G+L+ DH Sbjct: 115 FFEKTGEGLLARAFCHETDHLDGVLYTDH 143 >gi|238059170|ref|ZP_04603879.1| peptide deformylase [Micromonospora sp. ATCC 39149] gi|237880981|gb|EEP69809.1| peptide deformylase [Micromonospora sp. ATCC 39149] Length = 175 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M +P+ I DP+LR P+ ++++ L+ ++++ + G G+AA QIGV ++ Sbjct: 8 MTMRPIRIIGDPVLRTACEPVTTFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVSAQVF 67 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + H + + SD+ EGCLSIP R+ T D + Sbjct: 68 VYNADGHRGH------MINPTLELSDETQGDDEGCLSIPGLYFPTPRALHATAHGFDQHG 121 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + I G LA LQHE DHL+G L++D L R +++ Sbjct: 122 EPLTICGSGFLARALQHETDHLHGRLYVDTLRGDTRRQALREIR 165 >gi|160945220|ref|ZP_02092446.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|158442951|gb|EDP19956.1| hypothetical protein FAEPRAM212_02739 [Faecalibacterium prausnitzii M21/2] gi|295105555|emb|CBL03099.1| peptide deformylase [Faecalibacterium prausnitzii SL3/3] Length = 178 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G++ RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMMRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + + ADGLL C+QHE DHL+GI ++ Sbjct: 121 AQDRNGEWFELEADGLLGRCIQHENDHLDGITIME 155 >gi|150006541|ref|YP_001301285.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294778840|ref|ZP_06744257.1| peptide deformylase [Bacteroides vulgatus PC510] gi|319642942|ref|ZP_07997578.1| peptide deformylase [Bacteroides sp. 3_1_40A] gi|158513745|sp|A6L7J9|DEF_BACV8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149934965|gb|ABR41663.1| peptide deformylase [Bacteroides vulgatus ATCC 8482] gi|294447293|gb|EFG15876.1| peptide deformylase [Bacteroides vulgatus PC510] gi|317385490|gb|EFV66433.1| peptide deformylase [Bacteroides sp. 3_1_40A] Length = 184 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 5/173 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + I ++ LI NM E M DG+GLAA QIG+ R+V I Sbjct: 1 MILPIYVYGQPVLRKEAEDITPDYPNLKELIANMFETMNRADGVGLAAPQIGLPIRVVTI 60 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL + +INP I+ + +EGCLS+P VKR I V Y+D Sbjct: 61 DLDVMSDDLPEFKDFRRAYINPHILEVGGEEVSMEEGCLSLPGIHEAVKRPDRIHVTYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + +G LA +QHE DHL+G +FIDHLS L++ MI K+ +++ + Sbjct: 121 EELKEHDEWVEGYLARVMQHEFDHLDGKMFIDHLSALRKQMIKGKLGAMLKGK 173 >gi|159042736|ref|YP_001531530.1| peptide deformylase [Dinoroseobacter shibae DFL 12] gi|157910496|gb|ABV91929.1| peptide deformylase [Dinoroseobacter shibae DFL 12] Length = 168 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 56/170 (32%), Positives = 94/170 (55%), Gaps = 6/170 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG----LAAVQIGVLYR 57 + +P + +PD LR + P+ +I +I + D+M++ M + G+G LAA QIGV+ Sbjct: 1 MIRPFLSWPDARLRTPAAPVAEITDEIRTVWDDMIDTMEAMPGMGPGAGLAAPQIGVMQA 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 L V+D + R NP+++ S ++E ++P A + R +TVR++D Sbjct: 61 LAVVDASEERGRAI--RMANPQVLHASAQLRSHEEASPNLPGVFAKIDRPRAVTVRFLDA 118 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N + GL AT +QH++DHL G ++ D LS+ KRDM+ +K KL + Sbjct: 119 NGAVKEQDFVGLWATSVQHQIDHLAGRMYFDRLSKTKRDMLLRKARKLAR 168 >gi|85700135|gb|ABC74517.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASELLAVAVQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|29654308|ref|NP_820000.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154707431|ref|YP_001424426.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161830427|ref|YP_001596722.1| peptide deformylase [Coxiella burnetii RSA 331] gi|39931093|sp|Q83CV9|DEF1_COXBU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|29541575|gb|AAO90514.1| peptide deformylase [Coxiella burnetii RSA 493] gi|154356717|gb|ABS78179.1| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|161762294|gb|ABX77936.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 170 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL---AAVQIGVLYRLVVI 61 ++ +PDP L+ ++ +EK + + +ID M E Y+ + + + VI Sbjct: 3 KILQYPDPRLKTAAQRVEKFDDALQKMIDEMFETHYAATNCAALAATQLDMENPKHITVI 62 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + + P+ +N +II S + + + V R+A I VR D + Sbjct: 63 DFSPN--KDQPLCLVNAEIIERSGEHTEEEGCMSVGGGTFEKVTRAAKIKVRARDRYGKP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ADG +A C+QHELDHLNGI+F+D LS LKR I K++ KL + Sbjct: 121 VEFEADGFMAKCIQHELDHLNGIIFLDRLSTLKRGRIDKRLGKLRRQ 167 >gi|161511100|ref|NP_770645.2| peptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 1 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 61 LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ + Sbjct: 118 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 165 >gi|210134993|ref|YP_002301432.1| peptide deformylase [Helicobacter pylori P12] gi|238058211|sp|B6JM24|DEF_HELP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|210132961|gb|ACJ07952.1| polypeptide deformylase [Helicobacter pylori P12] Length = 174 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium tepidum TLS] gi|25452909|sp|Q8KCG7|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS] Length = 187 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 1/169 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+L ++P++ ++S I LI M + MY GIGLAA Q+G RLVV+ Sbjct: 1 MILPINTYSDPVLAMKAKPLKGVDSAIEELIAEMFDTMYKAPGIGLAAPQVGHSLRLVVV 60 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + + + I S+ +EGCLS+P +V R + IT+ Y D + Sbjct: 61 DISTIKEYADFKPMVVINPRIVAVRGRSLMEEGCLSVPGIAGNVVRPSAITLHYRDEKFE 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ++A LQHE+DHL+G LF+D + + R I K++ + + R Sbjct: 121 EHTADFHSMMARVLQHEIDHLDGTLFVDRMDKRDRRKIQKELDAIAEGR 169 >gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 146 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +E+I+ ++ LI +MLE MY DG+GLAA Q+G+L RL V Sbjct: 1 MALRNIRKYGDDVLRKECREVEEIDKRLLVLIKDMLETMYDADGVGLAAPQVGILKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D I + +EGCLS+P +V R ++ R ++ Q Sbjct: 61 IDIGDGPLVFINPEIIET------SGKQIDEEGCLSLPGKMEEVMRPNYVRARALNEKGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID +++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRVNK 146 >gi|254779233|ref|YP_003057338.1| peptide deformylase [Helicobacter pylori B38] gi|254001144|emb|CAX29102.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Helicobacter pylori B38] Length = 174 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira Interrogans Complexed With Inhibitor Actinonin Length = 177 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ DPILR++S P+ + + LI +M M +G+GLAA QIG+L ++ Sbjct: 1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFTTMRHAEGVGLAAPQIGILKQI 60 Query: 59 VVIDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 VV+ +D+ + +NP I + D S + EGCLS+P R V+R I ++ Sbjct: 61 VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +MD DG A QHE DHL GIL++D L K Sbjct: 121 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTK 161 >gi|39931120|sp|Q89N37|DEFL_BRAJA RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27352266|dbj|BAC49270.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110] Length = 170 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV +PD L +RP+ + ++ L ++L+ M + GIG+ A IGV R+VV Sbjct: 6 MTIRPLVRYPDRRLAIPARPVTAFDDELRELAADLLDTMRAAPGIGITAPHIGVPLRVVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + +++EG +S+P +V+R A + + Y D + Sbjct: 66 LELDAKDGAR---TYVNPEITWASPEMIMHREGSVSMPGVNDEVQRHARVRISYWDLDGT 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q ++ L A C QHE+D L+G+ +I LSRLKR+ + KK K+ + Sbjct: 123 MQTEDSEALRAVCHQHEIDQLDGMFWIQRLSRLKRERLVKKFEKMSRG 170 >gi|315226589|ref|ZP_07868377.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] gi|315120721|gb|EFT83853.1| peptide deformylase 2 [Parascardovia denticolens DSM 10105] Length = 176 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + I PDP+LR V PI I + NL+ ++L+ + GL+A QIGV R Sbjct: 15 TIRDIRIVPDPVLRTVCDPITTITPAVRNLVQDLLDTVDDPGRAGLSANQIGVALRAFSY 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ I EGCLS+P +R+ + V +D + + Sbjct: 75 NIDGKVGYVL------NPKIVARSGEQYGDEGCLSVPGLWYKTRRADYTRVEGIDLDGKK 128 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ G++ LQHE DHL+G +++D L + +R + M + + Sbjct: 129 IVLEGKGIMGRMLQHECDHLDGHVYLDRLEKEERREALRYMRRQQK 174 >gi|115352107|ref|YP_773946.1| peptide deformylase [Burkholderia ambifaria AMMD] gi|115282095|gb|ABI87612.1| peptide deformylase [Burkholderia ambifaria AMMD] Length = 177 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+ + + ++ ++ +M E M+ +G GLAA QIG+ +L++ Sbjct: 1 MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQLII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|259417291|ref|ZP_05741210.1| peptide deformylase [Silicibacter sp. TrichCH4B] gi|259346197|gb|EEW58011.1| peptide deformylase [Silicibacter sp. TrichCH4B] Length = 165 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTTRTCLPWPDKRLRTAATEVSEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 VDGSTERGRAV--RLANPEILHASIELREHEEASPNLPGVSAKIKRPRAVTVRFLNEDGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ AT +QH++DHLNG ++ D+LS++KRDM+ KK K + Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLIKKARKFAR 165 >gi|85700143|gb|ABC74521.1| polypeptide deformylase [Helicobacter pylori] gi|85700145|gb|ABC74522.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|312880068|ref|ZP_07739868.1| peptide deformylase [Aminomonas paucivorans DSM 12260] gi|310783359|gb|EFQ23757.1| peptide deformylase [Aminomonas paucivorans DSM 12260] Length = 181 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K + +FPDP+LR + + + ++++ MY DG+GLAA Q+G+ ++ Sbjct: 15 MAKLLDICVFPDPVLRVPTEKVADFGPSFQSFLEDLWNTMYLRDGVGLAAPQVGISRKVT 74 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D Q + + T + +EGCLS P V R I +RY + Sbjct: 75 VVDAQGQKFVLANPEILEREGETVA------EEGCLSFPGIFVPVLRPTRIRLRYQNERG 128 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + LA HE+DHLNG L IDH+S L+R I +K+ K D Sbjct: 129 EPVEREVVDFLARVFSHEIDHLNGRLLIDHVSPLRRQFIQRKLRKAASEAD 179 >gi|42524171|ref|NP_969551.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] gi|39576379|emb|CAE80544.1| polypeptide deformylase [Bdellovibrio bacteriovorus HD100] Length = 201 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 19/188 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ FPDP LR VS+P++ +I L ++M+E MY +GIGLAA Q+G L R+VVI Sbjct: 1 MIMKILTFPDPKLREVSQPVKTFGPEIAKLAEDMVETMYHANGIGLAAPQVGELVRMVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIIT---------------FSDDFSVYQEGCLSIPDYRADVKR 106 D + + + + + + + EGCLSIP Y V+R Sbjct: 61 DTRPKDEKGRRYKYEEMTELEAAVKQPLILINPEIVKGEGKTTFDEGCLSIPGYYETVER 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL- 165 +I ++ D N + I+ DGLLA C+QHE+DHL G LFIDHLS +K + I ++ K Sbjct: 121 YNYIEMKAFDVNGKEYIVKTDGLLAICMQHEMDHLEGTLFIDHLSFVKGNKIKNQIKKYG 180 Query: 166 ---VQLRD 170 + ++ Sbjct: 181 YPVKKEKE 188 >gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment) Length = 191 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 23/188 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ ++ DP+LRR +RP+E S I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 VYPIRLYGDPVLRRKARPVEDF-SGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAV 59 Query: 63 LQDHAHRKNP-----------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 V NP I + Y +V R+ I Sbjct: 60 EYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEVPRAERIR 119 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-----------MITK 160 V Y D + +++ +G +A QHE+DHL+GILF + L + KR+ K Sbjct: 120 VEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAELVRFQK 179 Query: 161 KMSKLVQL 168 + L++ Sbjct: 180 EARALLKE 187 >gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23] gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23] Length = 190 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 11/170 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LR+ +RP++ S + L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MIYPIRLYGDPVLRKKARPVQDF-SGLKKLAEDMLETMWEARGVGLAAPQIGLSQRLFVA 59 Query: 62 DLQDHAHRKNPMVF----------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + +NP I + Y +V R+ I Sbjct: 60 VEYADEPDEEERPLRDLVRQVYVVVNPVITHREGLVEGLEGCLSLPGLYSEEVPRAERIR 119 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 V + D + + + +G +A QHE+DHL G+LF + L + KR+ +K Sbjct: 120 VEFQDEEGRRRTLELEGYMARVFQHEIDHLEGVLFFERLPKPKREAFLEK 169 >gi|313836783|gb|EFS74497.1| peptide deformylase [Propionibacterium acnes HL037PA2] gi|314929809|gb|EFS93640.1| peptide deformylase [Propionibacterium acnes HL044PA1] gi|314972238|gb|EFT16335.1| peptide deformylase [Propionibacterium acnes HL037PA3] Length = 209 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L +RPI + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 29 ALRRVTRWGEPVLHAQTRPITEFDEDLTTLIRDMFVTMEAADGVGLAATQVGVNLSLFVY 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK---RSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 89 ACPDADNVVHHGAFCNPVVTLLEGRDRRLEAADEGCLSWPGGFQSLARPDLATCSGQDPW 148 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NG++F D LS+ R + ++ Sbjct: 149 GNDITVTGTGFFARCLQHETDHCNGVVFGDRLSKRARRKLDEQ 191 >gi|296119004|ref|ZP_06837577.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] gi|295968102|gb|EFG81354.1| peptide deformylase [Corynebacterium ammoniagenes DSM 20306] Length = 202 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 8/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +VI DP+L + P+ + + ++ LI +M E M + G+GLAA Q+G+ RL Sbjct: 7 MTIRAIVIHGDPVLHNPTEPVTEAIDSPELQTLIADMCETMAAAHGVGLAANQVGIAKRL 66 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG------CLSIPDYRADVKRSAFITV 112 V D D + INP + T ++ + CLS+P R+ + V Sbjct: 67 FVYDCPDDDGHMHKGCIINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWAKV 126 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + + G A CLQHE+ HL+GI++ D L + K + Sbjct: 127 TGLNEKGEDIEVEGTGFFARCLQHEVGHLDGIVYTDTLIGRNKRAAKKTIK 177 >gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ + ++N +I L +ML+ MYS DGIGLAA Q+G+ RL+V+DL Sbjct: 19 IHRMGDKVLRQPAKRVSQVNDEIRQLARHMLQTMYSADGIGLAAPQVGIPKRLIVVDLYP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+I + + QEGCLSIP +V R + V + D + + + Sbjct: 79 DKPEVPPLVLINPEIREYLGEVVAGQEGCLSIPGVFCEVMRPQGVVVSFKDETGRPRTLQ 138 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LLA +QHE+DHLNG+LF+DH+ ++ +++ K Sbjct: 139 ADDLLARVIQHEIDHLNGVLFVDHVENE--LLLDQELRK 175 >gi|126733796|ref|ZP_01749543.1| Peptide deformylase [Roseobacter sp. CCS2] gi|126716662|gb|EBA13526.1| Peptide deformylase [Roseobacter sp. CCS2] Length = 153 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 78/148 (52%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L + P+E ++ + L+ +M E MY G GLAA Q+GV R+ V Sbjct: 1 MAVRQIRFEGDPVLLETAAPVEAFDASLATLVRDMFETMYDAPGRGLAAPQVGVSRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D PM+F+NP+I +++ ++ E CLSIPD DV R ++ +++ D + Sbjct: 61 VDTTWKEADPAPMIFVNPQITAHAEEEALGTEACLSIPDQSFDVSRPVWVALKWQDLDGA 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A C+ HE DHL G+L Sbjct: 121 WHEGRFTDVDAVCICHEFDHLEGLLITQ 148 >gi|260062214|ref|YP_003195294.1| peptide deformylase [Robiginitalea biformata HTCC2501] gi|88783776|gb|EAR14947.1| peptide deformylase [Robiginitalea biformata HTCC2501] Length = 196 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + DP+LRR I ++ LI+NM E MY +G+GLAA Q+G RL ++ Sbjct: 1 MILPIVAYGDPVLRRKCEAIGPEYPELATLIENMWETMYQANGVGLAAPQVGRPIRLFLV 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D R VFIN ++ + + EGCLSIPD R DV R Sbjct: 61 DTSPFAEDEDFSPEEQEKLRAFKRVFINAQMQEETGKKWAFNEGCLSIPDIREDVTRQDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+RY D + DGLLA +QHE DH+ GILF DH+S LK+ ++ K++ + + + Sbjct: 121 ITLRYQDAEFKEHTETFDGLLARVIQHEYDHIEGILFTDHISSLKKRLLKGKLTNISKGK 180 >gi|302553425|ref|ZP_07305767.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302471043|gb|EFL34136.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 208 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 3/163 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + +L + R + + D+ LID+M MY DG GLAA Q+GV RL V D Sbjct: 26 VRRITEAGEEVLHKPCRDVTEFGPDLAALIDDMFLTMYIADGAGLAANQVGVDLRLFVYD 85 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCNA 119 D ++ +NP + + +V R VR D + Sbjct: 86 CPDDDGVRHVGHVVNPVLEPLDASHRRLLDDSEGCLSVPGAVMNVPRPDRAVVRGYDRDG 145 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + +I G A CL HE DH+NG +++D LS R ++M Sbjct: 146 EPLVIEGTGYFARCLAHETDHVNGQVYLDRLSGRDRKEALRQM 188 >gi|124267003|ref|YP_001021007.1| peptide deformylase [Methylibium petroleiphilum PM1] gi|124259778|gb|ABM94772.1| Peptide deformylase [Methylibium petroleiphilum PM1] Length = 177 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R++ P+ + + + LI++M + M + +G GLAA QIGV +LV Sbjct: 1 MAVRDILKMGDPRLLRIAHPVREFDTPALHALIEDMFDTMEAANGAGLAAPQIGVDLQLV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I S+D EGCLS+P R V R I Sbjct: 61 IFGFTKSERYPEAPPVPRTVLINPQITPLSEDLEDGWEGCLSVPGLRGVVPRHQRIRYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G+L+ + R Sbjct: 121 FDPQGRRIEREAEGFHARVVQHECDHLAGVLYPMRVRDFSR 161 >gi|307328361|ref|ZP_07607537.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885934|gb|EFN16944.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 170 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 70/143 (48%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 DP LR + ++++ LI++M MY+ G+GLAA QIGV R+ V D D Sbjct: 4 LGDPGLRAPCAEVTAFDAELALLIEDMYATMYAAHGVGLAANQIGVGLRVFVFDCPDDED 63 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 ++ +NP++ EGCLS+P A R + + + I G Sbjct: 64 HRHLGHVVNPRLAAADGVNVHGPEGCLSLPGIEAGTSRYDRAVIEGVTMTGEPVRIEGTG 123 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 A CLQHE DHL+G LF+D LS Sbjct: 124 FFARCLQHECDHLDGGLFLDRLS 146 >gi|213855562|ref|ZP_03383802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 148 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LFID+LS Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLS 148 >gi|170726943|ref|YP_001760969.1| peptide deformylase [Shewanella woodyi ATCC 51908] gi|169812290|gb|ACA86874.1| peptide deformylase [Shewanella woodyi ATCC 51908] Length = 163 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P+ I++ + ID++LE MY DGIGLAA Q+G + ++ Sbjct: 1 MAVLDILTIPDERLKRKAKPVTDISA-VQGFIDDLLETMYHTDDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL R P V INP+I+ +F +EGCLSIP YRA V R+ + V +D Sbjct: 60 VIDLSPE--RDQPQVLINPEIVAAEGEFVG-EEGCLSIPGYRAKVARNEKVKVTALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I D LA LQHE+DHLNG++F DHLS+LK+ + +K+SK Sbjct: 117 TPFEIETDTFLAIVLQHEMDHLNGVVFTDHLSKLKQQIALRKVSKYA 163 >gi|307298449|ref|ZP_07578252.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915614|gb|EFN45998.1| peptide deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 163 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 5/164 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ +PILR VS +E + ++ ++ + + MY DG+GLAA Q+ + RL V D Sbjct: 2 KVIYIGNPILRDVSEKVEVFDDELRQFVNELSKTMYVEDGVGLAAPQVAISRRLFVYDPG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D V +NP+I+ SD+ +EGCLSIP ADV R A + +RY D + Sbjct: 62 DG-----LRVVVNPEILFRSDEKVKIEEGCLSIPGIYADVVRPASVRIRYQDEYGHYHED 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A +QHE DHL+GILF+D+LS KR ++ K+ ++++ Sbjct: 117 DLTDYPARIVQHETDHLDGILFVDYLSSAKRAILKPKLDQIIKE 160 >gi|308063423|gb|ADO05310.1| peptide deformylase [Helicobacter pylori Sat464] Length = 175 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 101/170 (59%), Gaps = 2/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P IL+ +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILKTISKEVVSFDSKLHQQLDDMRESMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETKGTIMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELNKN 170 >gi|208434704|ref|YP_002266370.1| polypeptide deformylase [Helicobacter pylori G27] gi|238058212|sp|B5Z7F5|DEF_HELPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|208432633|gb|ACI27504.1| polypeptide deformylase [Helicobacter pylori G27] Length = 174 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|308184577|ref|YP_003928710.1| peptide deformylase [Helicobacter pylori SJM180] gi|308060497|gb|ADO02393.1| peptide deformylase [Helicobacter pylori SJM180] Length = 174 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIEAGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|257068838|ref|YP_003155093.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559656|gb|ACU85503.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 163 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I DP+LR PI I L+ ++ + + G+AA QIGV R Sbjct: 1 MTIRPIRIVGDPVLRTPCDPIRTITEGTRTLVRDLKDTVDDEGRAGVAANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP I+ S++ EGCLS+P RSA+ MD + Sbjct: 61 WHFVE---TGEIGCILNPVIVELSEELQHDDEGCLSVPGLFYPRTRSAYARCVGMDVEGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +GL+A +QHE+ HL+G L+ID L R + +++ + Sbjct: 118 EIELAGEGLVARLIQHEVGHLDGELYIDGLERSVKKRALRQIRE 161 >gi|229817674|ref|ZP_04447956.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] gi|229785463|gb|EEP21577.1| hypothetical protein BIFANG_02945 [Bifidobacterium angulatum DSM 20098] Length = 160 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + PDP+LR I++I + L+D++L+ + GL+A QIGV R Sbjct: 1 MAIREIRVVPDPVLRTPCDEIKEITPAVRRLVDDLLQTVDDPGRAGLSANQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +I EGCLS+P +R+ + VR +D + + Sbjct: 61 YNIDGKIGYIL------NPVIEEKSGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ GL LQHE DHL+G +++D L + +R + M Sbjct: 115 EIVLEGHGLFGRMLQHECDHLDGHVYLDRLEKEERREAMRYMRN 158 >gi|260778893|ref|ZP_05887785.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] gi|260605057|gb|EEX31352.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450] Length = 168 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP L+ + + I + LID+MLE +Y +++GIGLAA Q+G +V Sbjct: 1 MAVLKILTAPDPKLKIKAEKVSDI-QSVQTLIDDMLETLYATSNGIGLAATQVGHREAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + R P++ +NP+++ + + CLS+PDY ADV+R + V +D + Sbjct: 60 IIDLSE--SRDQPLILVNPEVVEGKNRAMGQEG-CLSVPDYYADVERYTSVVVEALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + I +D LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 117 EPVRIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKQRMALKKVKKHIK 164 >gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205] Length = 200 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 92/151 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR +R I K++ + L +ML MY+ GIGLAA QIGV +L+VIDL+ Sbjct: 31 DIHKLGDEVLREPARRIGKVDDAVRKLATDMLVSMYAAKGIGLAAPQIGVNQQLLVIDLE 90 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I + Y+EGCLSIP DV R + + V Y D + + + Sbjct: 91 LEDPSSPPLVLINPEITSVGGGLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDAFGRPKRM 150 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ADGL+A C+QHE+DHLNG+LF+D ++ ++ Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDEEK 181 >gi|255657698|ref|ZP_05403107.1| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849886|gb|EEX69893.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 155 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+L+ V P+EKI+ D+ L+D+M MY +DG+GLAA Q+G R+VV Sbjct: 1 MAILEIKKAGAPVLKEVCAPVEKIDKDLRKLLDDMAVTMYESDGVGLAAPQVGRPIRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID QD + + +ITF + + EGCLS+P +V+R+A + V +++ + Sbjct: 61 IDCQDDHGL----IELINPVITFREGTATDTEGCLSVPGIYGEVERAAKVKVEFLNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 Q + A GLLA C+QHELDHL G LFID L R Sbjct: 117 KQHLTATGLLARCIQHELDHLEGQLFIDIAKSLHR 151 >gi|237753393|ref|ZP_04583873.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] gi|229375660|gb|EEO25751.1| polypeptide deformylase pdf formylmethioninedeformylase [Helicobacter winghamensis ATCC BAA-430] Length = 168 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ +P+P+LR++S+ +E + + L+D M EVM + +G+G++A+Q+ R ++I Sbjct: 1 MLEVITYPNPLLRQISKSVEVFDKGLHTLLDEMYEVMLAKNGVGISAIQVAKPIRALLIC 60 Query: 63 LQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D ++ + I D ++ EGCLS+P++ ++KR++ I + Y D Sbjct: 61 IPDEDGNQHKEDLLEVINPKIIERDGEILFNEGCLSVPEFYEEIKRASNIKIAYQDRYGN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q I A LA QHE+DHLNG+LFID LS +KR K++ + + Sbjct: 121 PQEIVAQDYLAVAFQHEIDHLNGVLFIDKLSIVKRKKFEKELKQRQK 167 >gi|284047692|ref|YP_003398031.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] gi|283951913|gb|ADB46716.1| peptide deformylase [Acidaminococcus fermentans DSM 20731] Length = 158 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PILR + P+ + + + L+ +M E MY+ +G GLAA QIG+ RLVV Sbjct: 1 MAIYDIVKVGAPILREKAVPVTRFDKKLARLLKDMAETMYAANGCGLAAPQIGLSKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D A + ++T + +V EGCLS+PDY +VKR+A ITV + D Sbjct: 61 IDAGDGAGIR----EFVNPVLTDPEGEAVDSEGCLSVPDYEGEVKRAARITVHFQDRKGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 H + ADGLLA LQHE DHL G+LFID L Sbjct: 117 HYRLTADGLLARALQHECDHLEGVLFIDKAVSL 149 >gi|262183416|ref|ZP_06042837.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 204 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M + G+GLAA QIGV RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 60 Query: 59 VVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V D NP++ + T D EGCLS+P Sbjct: 61 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R+ + V + + I G A LQHE HL+G ++ D L+ + K + Sbjct: 121 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 180 Query: 164 K 164 + Sbjct: 181 R 181 >gi|296328150|ref|ZP_06870681.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154662|gb|EFG95448.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 174 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VC----DDGNGVLRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165 >gi|253702639|ref|YP_003023828.1| peptide deformylase [Geobacter sp. M21] gi|251777489|gb|ACT20070.1| peptide deformylase [Geobacter sp. M21] Length = 168 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M + G A QIGV R+ Sbjct: 1 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMQAGPGSVGVASPQIGVSLRVC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VID+ + H K+ + I +V +EGC+S+PDY DV+RS +T+R+ + Sbjct: 61 VIDVSKNRHGKDNNHGLLLMINPEILARSGAAVMREGCMSVPDYTGDVERSTELTLRFTE 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + I A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 121 PDGTVREIDASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 168 >gi|163738220|ref|ZP_02145636.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] gi|161388836|gb|EDQ13189.1| Peptide deformylase [Phaeobacter gallaeciensis BS107] Length = 169 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI ++ L +MLE MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPIATPG-NVETLARDMLETMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D + Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGCLSIKGVSLEVTRPAWVDLAWSDLHGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151 >gi|53719772|ref|YP_108758.1| peptide deformylase [Burkholderia pseudomallei K96243] gi|53723743|ref|YP_103199.1| peptide deformylase [Burkholderia mallei ATCC 23344] gi|76809016|ref|YP_333979.1| peptide deformylase [Burkholderia pseudomallei 1710b] gi|121601445|ref|YP_993377.1| peptide deformylase [Burkholderia mallei SAVP1] gi|126440852|ref|YP_001059473.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126452569|ref|YP_001066757.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134277462|ref|ZP_01764177.1| peptide deformylase [Burkholderia pseudomallei 305] gi|167004075|ref|ZP_02269849.1| peptide deformylase [Burkholderia mallei PRL-20] gi|167720172|ref|ZP_02403408.1| peptide deformylase [Burkholderia pseudomallei DM98] gi|167739177|ref|ZP_02411951.1| peptide deformylase [Burkholderia pseudomallei 14] gi|167816388|ref|ZP_02448068.1| peptide deformylase [Burkholderia pseudomallei 91] gi|167824767|ref|ZP_02456238.1| peptide deformylase [Burkholderia pseudomallei 9] gi|167846298|ref|ZP_02471806.1| peptide deformylase [Burkholderia pseudomallei B7210] gi|167894880|ref|ZP_02482282.1| peptide deformylase [Burkholderia pseudomallei 7894] gi|167903269|ref|ZP_02490474.1| peptide deformylase [Burkholderia pseudomallei NCTC 13177] gi|167911509|ref|ZP_02498600.1| peptide deformylase [Burkholderia pseudomallei 112] gi|167919519|ref|ZP_02506610.1| peptide deformylase [Burkholderia pseudomallei BCC215] gi|217421605|ref|ZP_03453109.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237812813|ref|YP_002897264.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238563756|ref|ZP_00438343.2| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242316254|ref|ZP_04815270.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|254178715|ref|ZP_04885370.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|254179317|ref|ZP_04885916.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|254189297|ref|ZP_04895808.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|254197856|ref|ZP_04904278.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|254200152|ref|ZP_04906518.1| peptide deformylase [Burkholderia mallei FMH] gi|254206490|ref|ZP_04912842.1| peptide deformylase [Burkholderia mallei JHU] gi|254258903|ref|ZP_04949957.1| peptide deformylase [Burkholderia pseudomallei 1710a] gi|254297203|ref|ZP_04964656.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|52210186|emb|CAH36165.1| putative deformylase [Burkholderia pseudomallei K96243] gi|52427166|gb|AAU47759.1| polypeptide deformylase [Burkholderia mallei ATCC 23344] gi|76578469|gb|ABA47944.1| polypeptide deformylase [Burkholderia pseudomallei 1710b] gi|121230255|gb|ABM52773.1| polypeptide deformylase [Burkholderia mallei SAVP1] gi|126220345|gb|ABN83851.1| peptide deformylase [Burkholderia pseudomallei 668] gi|126226211|gb|ABN89751.1| peptide deformylase [Burkholderia pseudomallei 1106a] gi|134251112|gb|EBA51191.1| peptide deformylase [Burkholderia pseudomallei 305] gi|147749748|gb|EDK56822.1| peptide deformylase [Burkholderia mallei FMH] gi|147753933|gb|EDK60998.1| peptide deformylase [Burkholderia mallei JHU] gi|157806966|gb|EDO84136.1| polypeptide deformylase [Burkholderia pseudomallei 406e] gi|157936976|gb|EDO92646.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237] gi|160699754|gb|EDP89724.1| polypeptide deformylase [Burkholderia mallei ATCC 10399] gi|169654597|gb|EDS87290.1| polypeptide deformylase [Burkholderia pseudomallei S13] gi|184209857|gb|EDU06900.1| polypeptide deformylase [Burkholderia pseudomallei 1655] gi|217395347|gb|EEC35365.1| peptide deformylase [Burkholderia pseudomallei 576] gi|237504956|gb|ACQ97274.1| peptide deformylase [Burkholderia pseudomallei MSHR346] gi|238520038|gb|EEP83502.1| peptide deformylase [Burkholderia mallei GB8 horse 4] gi|242139493|gb|EES25895.1| peptide deformylase [Burkholderia pseudomallei 1106b] gi|243060514|gb|EES42700.1| peptide deformylase [Burkholderia mallei PRL-20] gi|254217592|gb|EET06976.1| peptide deformylase [Burkholderia pseudomallei 1710a] Length = 177 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|282850137|ref|ZP_06259516.1| peptide deformylase [Veillonella parvula ATCC 17745] gi|282579630|gb|EFB85034.1| peptide deformylase [Veillonella parvula ATCC 17745] Length = 162 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRALIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+I + CLS+P Y DV+R +TV+ +D + + Sbjct: 61 V---DDQSGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFNKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|271966900|ref|YP_003341096.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510075|gb|ACZ88353.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 182 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 6/172 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ +P+L R + + + D+ L+ +M MY+ +G+GLAA QIG+ R+ V Sbjct: 8 TARPITFVGEPVLHRPCETVTRFDDDLAMLVADMFASMYAAEGVGLAANQIGIGLRVFVY 67 Query: 62 DLQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D V +NP + Y EGCLS+P RA + R V D Sbjct: 68 DCPDETEEFRKGVVVNPTLVMPGPDEEHLDDYAEGCLSVPGQRASLARPDRAVVHGFDVT 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GLLA CLQHE DHL G L+ID L +R+ + Q RD Sbjct: 128 GAPVTVEGTGLLARCLQHETDHLEGRLYIDRLPAERREQVLAAYE---QERD 176 >gi|118340581|gb|ABK80631.1| putative formylmethionine deformylase [uncultured marine Nitrospinaceae bacterium] Length = 169 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 94/165 (56%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++++PD L++VS+P+E+ + D+ I+N+ E S +G+AA Q+G L R+V Sbjct: 1 MALLNILVYPDERLKQVSQPVEEFSEDLKKFIENLEETFRSFPGCVGIAAPQVGRLERIV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++D+ + N + + S+ +EGCLS+PD+ V+RS I ++ ++ Sbjct: 61 LVDISHKSKHVNHGFLVLINPEVIFYEGNSLGREGCLSVPDFIGKVERSKSINLKALNQK 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + G A +QHE+DHLNG LF+D L +R+ ++K++ Sbjct: 121 GEKLELQMSGYEARAVQHEIDHLNGKLFLDRLVS-RRNSLSKRIE 164 >gi|253999126|ref|YP_003051189.1| peptide deformylase [Methylovorus sp. SIP3-4] gi|253985805|gb|ACT50662.1| peptide deformylase [Methylovorus sp. SIP3-4] Length = 177 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ DP+L + + P+ + ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPIRPVLRMGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A + V +NP + +DD EGCLS+P R V R + Sbjct: 61 IFGVGKNPRYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D G A +QHE DHL+GIL+ + L Sbjct: 121 FDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159 >gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 164 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 6/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+PDP+LR ++ IE+ + + + ++ M +MY DG+GLAA Q+G ++ V Sbjct: 1 MSDRTIRIYPDPVLREPTKEIERFDDNFKSFLEEMESLMYEYDGVGLAAPQVGESLKVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + I D V QEGCLS P DV R A + V D N + Sbjct: 61 I------AYEGKLHVLINPRIVDYDGRQVDQEGCLSFPGIFEDVARPASVVVEAQDENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A+G LA + HE+DHLNG L IDHLS +KR+M+ Sbjct: 115 PYSIEAEGFLARAMCHEIDHLNGKLMIDHLSPMKREMV 152 >gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235] Length = 191 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 14/179 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V + + +L +P+ K ++++ L +NM++ MY +GIGLAA Q+G+ V+ Sbjct: 1 MLLQIVQYGEKVLHETGKPVTKFDAELAELFENMVDTMYEAEGIGLAAQQVGLPLMFCVV 60 Query: 62 DLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 DL PM NPK+ Y+EGCLS P+ R DV+R+ Sbjct: 61 DLNGCDPDFDYTLDGAKPPFDLFMPMAIANPKVELIKSKELAYEEGCLSFPEIRGDVERT 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +I + D +I A+GLL C+QHE+DHLNGILFID + + I ++++L Sbjct: 121 DWIRCEFQDLQGNPHVIEANGLLGRCIQHEVDHLNGILFIDRMKKRVLKKIQPQVNQLK 179 >gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 187 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 58/147 (39%), Positives = 89/147 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ I K++ + L ML+ MYS +GIGLAA Q+ V +L+V+D Sbjct: 17 LEIHYLGDRVLRQPAKRIAKVDDAVRQLAKEMLQTMYSANGIGLAAPQVAVNKQLLVVDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP+I FS D ++EGCLSIP DV R I V + D + + + Sbjct: 77 EPDNATNQPIILINPQITHFSRDLCQFEEGCLSIPGVYLDVVRPKAIEVSFKDESGRPKK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 + A GLLA +QHE+DHLNG++F+D + Sbjct: 137 LKATGLLARVIQHEMDHLNGVMFVDRV 163 >gi|167586850|ref|ZP_02379238.1| peptide deformylase [Burkholderia ubonensis Bu] Length = 176 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + + L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPALNELVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A I Sbjct: 61 FGFGNNNRYPEAPPVPETVLINPKVEFMPPDMEEGWEGCLSVPGMRGVVSRYAKIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|71892002|ref|YP_277732.1| peptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123761479|sp|Q493I1|DEF_BLOPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71796108|gb|AAZ40859.1| polypeptide deformylase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 173 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 3/153 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR ++ P+ ++ D +I++M + MY GIGLAA Q+ + +++V Sbjct: 1 MSILEILYYPDKRLRTIADPVVAVSDDTNQIINDMFDTMYFKKGIGLAATQVNIHQQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL ++ IT E CLSIP V RS IT++ +D Sbjct: 61 IDLYKKNKQRL---VFINPSITKKTGIISIPESCLSIPQIYEIVPRSEKITIQSLDQYGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+ LLA C+QHE+DHL G LFIDHLS L Sbjct: 118 KFEMEANNLLAICIQHEVDHLFGKLFIDHLSPL 150 >gi|124386084|ref|YP_001029186.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126448140|ref|YP_001080884.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|254358101|ref|ZP_04974374.1| peptide deformylase [Burkholderia mallei 2002721280] gi|124294104|gb|ABN03373.1| peptide deformylase [Burkholderia mallei NCTC 10229] gi|126241010|gb|ABO04103.1| peptide deformylase [Burkholderia mallei NCTC 10247] gi|148027228|gb|EDK85249.1| peptide deformylase [Burkholderia mallei 2002721280] Length = 177 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSLPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGAKLERIAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|194336843|ref|YP_002018637.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] gi|238693370|sp|B4SBG6|DEF_PELPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194309320|gb|ACF44020.1| peptide deformylase [Pelodictyon phaeoclathratiforme BU-1] Length = 188 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ I+ D ILR ++P++ ++S I LI +M E M + GIGLAA Q+G RL+V Sbjct: 1 MILPINIYSDDILRLKAKPLKGVDSAIEELIASMFESMRNASGIGLAAPQVGRSIRLLVL 60 Query: 61 -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + PMV INP I++ + +EGCLS+P + V R A IT++Y D + Sbjct: 61 DVSCVSKCEHEKPMVVINPHILSV-RGHNDMEEGCLSVPGVQGYVVRPAAITLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G++A +QHE+DHL+G LF+D + + R I K+++ L Sbjct: 120 AERTGEFSGMVARVIQHEIDHLDGTLFVDRMEKRDRKKIQKELTALA 166 >gi|312141214|ref|YP_004008550.1| peptide deformylase def [Rhodococcus equi 103S] gi|325673956|ref|ZP_08153646.1| peptide deformylase [Rhodococcus equi ATCC 33707] gi|311890553|emb|CBH49871.1| peptide deformylase Def [Rhodococcus equi 103S] gi|325555221|gb|EGD24893.1| peptide deformylase [Rhodococcus equi ATCC 33707] Length = 205 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 13/177 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L ++P+ + +++ +LI +M E M + +G+GLAA Q+GV RL V Sbjct: 1 MAILPIRIVGDPVLHEPTKPVTESPAELADLIRDMYETMDAANGVGLAANQVGVAKRLFV 60 Query: 61 IDLQD----HAHRKNPMVFINPKIITFSDDFSVYQ---------EGCLSIPDYRADVKRS 107 D D P++ + + + + EGCLS+P + R+ Sbjct: 61 YDCPDYAAGKDASGKPVMRRGCVVNPVLETSEIPETMPDEDDDVEGCLSVPGEQFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V D + I G A LQHE HL+G L++D L + K + + Sbjct: 121 DWAKVTGTDEHGNPVEIEGHGFFARMLQHETGHLDGFLYVDVLIGRNKRAAKKTIKR 177 >gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1] gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1] Length = 177 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 99/165 (60%), Gaps = 1/165 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + I+PD L+ ++ +E+ N ++++L++ M E MY G+GLAA Q+GVL R++++DL+ Sbjct: 3 DIRIYPDEALKSKAQKVEEFNQELVDLVNGMFETMYKRGGVGLAANQVGVLKRVLILDLK 62 Query: 65 DHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + + + V +EGCLS+P VKR+ ++ V+ + + + Sbjct: 63 AGTEEQGKNPIVLVNPEIVASEGEVVKEEGCLSLPGLYRKVKRAQWVKVKAQNLDGEEIE 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 I +GLLA LQHE+DHLNG++FID LS L++ + +K KL + Sbjct: 123 IEGEGLLARALQHEIDHLNGVVFIDRLSPLQKRLALEKFKKLKRN 167 >gi|308177361|ref|YP_003916767.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744824|emb|CBT75796.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 190 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 9/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + ++ +P+L + + + + + + L+ +M M G+GLAA QIG+ R+ Sbjct: 1 MPIRQITVYGEPVLHKRAVEVTEFDDALRALVADMHLTMDEAHGVGLAAPQIGLGLRMFT 60 Query: 61 IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D V INPK+ EGCLS+P ++R+ + V Sbjct: 61 YVFADQDDAPERGVVINPKLTLSKVSQAPAHPDEDSEGCLSVPGLNYPLQRADYAKVEGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D A G A +QHE DHL+G L++D L K+ K + Sbjct: 121 DEFGNPISFEAHGWFARIMQHEYDHLDGYLYVDKLQP----RWEKRWKKAKK 168 >gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide Deformylase 1b (Atpdf1b) G41m Mutant In Complex With Actinonin Length = 193 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 90/166 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILR ++ I+ + ++ NL+D M +VMY TD IGL+A Q+G+ +L+V + Sbjct: 2 EIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDMIGLSAPQVGLNVQLMVFNPA 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +V +NPKI +SD + EGCLS P A+V R + + D + I Sbjct: 62 GEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSI 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 L A QHE DHL G+LF D ++ D I +++ L + + Sbjct: 122 SLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 167 >gi|52080175|ref|YP_078966.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52785552|ref|YP_091381.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646045|ref|ZP_08000275.1| def protein [Bacillus sp. BT1B_CT2] gi|52003386|gb|AAU23328.1| polypeptide deformylase [Bacillus licheniformis ATCC 14580] gi|52348054|gb|AAU40688.1| Def [Bacillus licheniformis ATCC 14580] gi|317391795|gb|EFV72592.1| def protein [Bacillus sp. BT1B_CT2] Length = 160 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V +P +L + P+ + + L+DNM + M DG+GLAA QIGV R V Sbjct: 1 MAVKPIVTYPAEVLETPAEPVASFDKSLKKLLDNMYDTMLELDGVGLAAPQIGVSKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP++I S + + + CLS PD +VKRS ++ V+ D + Sbjct: 61 VDIGDDTGR---IELVNPEVIEESGEQTGPEG-CLSFPDLYGEVKRSDYVKVKAFDRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+G LA L HE+DHL+GILF ++R Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFTSKVTR 148 >gi|224438109|ref|ZP_03659044.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 175 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI Sbjct: 4 ATLAILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVI 63 Query: 62 D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +D K ++ + +D ++EGCLS+P++ VKR ++V Y D Sbjct: 64 NLPRDEDKQQYKEDLLEVINPTFLTQEDDIEWEEGCLSVPEFYESVKRFNKVSVAYKDRF 123 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I+ A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 124 GNDKILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 160 >gi|15611796|ref|NP_223447.1| peptide deformylase [Helicobacter pylori J99] gi|8134402|sp|Q9ZL51|DEF_HELPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99] Length = 174 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSIMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|257438995|ref|ZP_05614750.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] gi|257198580|gb|EEU96864.1| peptide deformylase [Faecalibacterium prausnitzii A2-165] Length = 178 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L R+ V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTNFDDRLATLLDDMRETMIAADGVGLAGPQVGMLRRIFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S+D EGCLS P + V R + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEDEETAYEGCLSFPGHNGAVTRPVAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D N + A+ LLA C+QHE DHL+GI ++ Sbjct: 121 AQDRNGNWFELEAENLLARCIQHENDHLDGITIME 155 >gi|116328151|ref|YP_797871.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331396|ref|YP_801114.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280858|sp|Q04RW4|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122284057|sp|Q051Q7|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 178 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ D ILR+VS P+ + + LI +M + M +G+GLAA QIG+L + Sbjct: 1 MSVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ + V +NP I + D S + EGCLS+P R V+R I + Sbjct: 61 IVVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++MD DG A QHE DHL+GIL++D L K Sbjct: 121 QWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRLKDTK 162 >gi|158320460|ref|YP_001512967.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158140659|gb|ABW18971.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 147 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++S+P++ I+ I+ L+D+M+E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEEDPVLRKISKPVDTIDDKIITLLDDMIETMYDADGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I + EGCLS+P +V R + V+ D Sbjct: 61 IDIGEGVIELINPEIIAEDGV------QCDNEGCLSLPGITEEVARPRTVKVKGFDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ + LLA L HE+DHLNGILFID + Sbjct: 115 EMIVEGEELLARALCHEIDHLNGILFIDRAEK 146 >gi|19704492|ref|NP_604054.1| polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|23396540|sp|Q8REF0|DEF_FUSNN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 174 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYKIKKYGEDVLKQIAKEVELSEINDEFRQFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VC----DDGNGVLRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 KEVEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANIKKE 165 >gi|189218929|ref|YP_001939570.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] gi|238692077|sp|B3DUG9|DEF_METI4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189185787|gb|ACD82972.1| N-formylmethionyl-tRNA deformylase [Methylacidiphilum infernorum V4] Length = 190 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 13/180 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + LV++ +PILR+ PI+ + + L+ +MLE M G+GLAA Q+G+ +L VI Sbjct: 1 MILKLVLYDNPILRKKGMPIDSFDDRLKRLVQDMLETMAYYKGVGLAAQQVGLNLQLAVI 60 Query: 62 DLQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 D+ ++ +F+ ++++ + EGCLS P R DV RS Sbjct: 61 DVSGSKLSSSLLIGGKPAMVEEHMPLFLINPTLSYTQSKEISNEGCLSFPGLRIDVPRSK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + V+ D + A G L+ +QHE DHL G LFID+LS ++ I +++ K+ + Sbjct: 121 RVKVKTFDLEGRPWYFEAGGFLSVAIQHEFDHLQGKLFIDYLSAEQKKAIKEELEKIKRG 180 >gi|317151959|ref|YP_004120007.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] gi|316942210|gb|ADU61261.1| peptide deformylase [Desulfovibrio aespoeensis Aspo-2] Length = 165 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K + +PD +L + P+ +I ++ LI++M+E MY DG+GLAA Q+G RL+ + Sbjct: 1 MKLEICTWPDDVLAARAEPVAEITPEMKKLINDMVETMYEGDGVGLAAPQVGESIRLICV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ D +EGCLS P++ V R + V MD + Sbjct: 61 DQTGPKLRADLRVLINPEIVE-CDGEVESEEGCLSCPEFSGTVMRKERVKVTGMDPDGGP 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I DG LA LQHE+DHLNGI D RLK+ M K+ +K Sbjct: 120 VCIDTDGFLAIVLQHEIDHLNGITIADRAGRLKKAMYRKRAAKWK 164 >gi|113868038|ref|YP_726527.1| peptide deformylase [Ralstonia eutropha H16] gi|113526814|emb|CAJ93159.1| polypeptide or peptide deformylase [Ralstonia eutropha H16] Length = 177 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +V+RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLQVARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPVLEMESDEMEDGWEGCLSVPGLRGVVPRHLRLKYSGH 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL GIL+ + ++ Sbjct: 121 DLMGNRIERVAEGFHARVVQHECDHLQGILYPMRIKDFRQ 160 >gi|126733795|ref|ZP_01749542.1| formylmethionine deformylase [Roseobacter sp. CCS2] gi|126716661|gb|EBA13525.1| formylmethionine deformylase [Roseobacter sp. CCS2] Length = 166 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V++P P LR + P+ I ++ + D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRPFVMWPHPALRTAATPVAVITDEVRAIWDEMIVAMDTMPGVGLAAPQLGVEMALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + NP I+ S + V++EG ++P A V R +TVR+++ + Q Sbjct: 61 IDASEERGQAI--RMANPTILHSSVEPRVHEEGSPNLPGVWAKVTRPRAVTVRFLNADGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL AT +QH++DHL+G +F DHL+R+KRDM+ KK +KL + Sbjct: 119 WDRQDFVGLWATSVQHQIDHLSGKMFFDHLTRVKRDMLIKKSAKLRRG 166 >gi|315644089|ref|ZP_07897259.1| peptide deformylase [Paenibacillus vortex V453] gi|315280464|gb|EFU43753.1| peptide deformylase [Paenibacillus vortex V453] Length = 172 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M K +V F DPILR+V+RP++ +N+ + ++D+M E +Y GLAA QIG+L RL+ Sbjct: 1 MTVKAIVPFGDPILRKVARPVDPVNARALKILDDMAETLYDSAGRAGLAAPQIGILRRLI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D + + E CLS P Y V+R+ + V+ ++ Sbjct: 61 VMDCGEGLIELINPEIVEMNGEQVGP------EACLSYPGYYGYVQRAHHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ + LA C+QHE+DHLNG+LF+DH+ Sbjct: 115 ETIILEGEDYLARCMQHEIDHLNGLLFVDHV 145 >gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii] Length = 198 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 87/157 (55%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + Sbjct: 11 LSIVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNP 70 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 71 EGERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFG 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 G A QHE DHL G+L+ID ++ + I K Sbjct: 131 TTFRGWTARIFQHEYDHLEGVLYIDRMTPKALNSIGK 167 >gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii] Length = 198 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 87/157 (55%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++PDP LR + I + ++ L+D ML+VMY TDG+GL+A Q+GV RL+V + Sbjct: 11 LSIVLYPDPKLRARNIRINSFDDNLKKLVDEMLDVMYRTDGVGLSAPQVGVNARLMVFNP 70 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + VF+NP I+ F + +EGCLS +ADV+R I V D N + Sbjct: 71 EGERGKGKEYVFVNPMIVKFGKEREADREGCLSFYSAQADVERPISIRVEAQDINGKKFG 130 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 G A QHE DHL G+L+ID ++ + I K Sbjct: 131 TTFRGWTARIFQHEYDHLEGVLYIDRMTPKALNSIGK 167 >gi|296536912|ref|ZP_06898949.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] gi|296262760|gb|EFH09348.1| peptide deformylase [Roseomonas cervicalis ATCC 49957] Length = 176 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L RV+ P+ + + +I LI +M E M G+GLAA Q+ V R+ Sbjct: 1 MAILKIARMGHPVLLRVADPVPDPTDPEIRRLIRDMAETMLDAGGLGLAAPQVHVPLRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + +NP+I EGCLSIP R +V+R+ I R +D Sbjct: 61 VFRQGETVAA-----LVNPEIELLGPPDQRGWEGCLSIPGLRGNVERAQRIAFRGLDVEG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +GLLA +QHE DHLNGIL+ +S Sbjct: 116 DSVEGEVEGLLARVMQHEFDHLNGILYPSRMSD 148 >gi|84514540|ref|ZP_01001904.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511591|gb|EAQ08044.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 152 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 78/147 (53%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + L DP+LR V+ P+ + D+ L+ ML MY+ G GLAA Q+GV R+ VI Sbjct: 1 MALDLRFDGDPVLRAVAEPVTAFDEDLALLVAEMLATMYAAPGRGLAAPQVGVSQRVFVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +P F+NP+II S + E CLSIPD V R ++ +R+ D Sbjct: 61 DTTWKDGDPDPQAFVNPQIIARSKTTATAVEACLSIPDRAFAVTRPIWVDMRWQDIAGDV 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 Q DG+ A C+ HE DHL+G+L D Sbjct: 121 QQGRFDGVAAICVCHEYDHLDGVLITD 147 >gi|126728526|ref|ZP_01744342.1| peptide deformylase [Sagittula stellata E-37] gi|126711491|gb|EBA10541.1| peptide deformylase [Sagittula stellata E-37] Length = 163 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V +PD LR + ++ I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRPFVPWPDKRLRAAAAQVDAITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R + NP+I+ S ++EG ++P A + R +TV Y+D Sbjct: 61 VDASD--ARGQAVRMANPEILHASVQLRDHEEGSPNLPGVWAKIARPRAVTVAYIDETGL 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG ++ D LS++KRDM+ +K K+ Sbjct: 119 RVERDFVGLWATSVQHQVDHLNGRMYFDRLSKVKRDMLIRKARKM 163 >gi|317011008|gb|ADU84755.1| peptide deformylase [Helicobacter pylori SouthAfrica7] Length = 174 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 55/171 (32%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + + + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDEKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPREDDLQHKEDCLEIINPKWIETKGSLMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASALLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 187 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 90/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+GV +L+V+D Sbjct: 17 LEIHFLGDRVLRQPAKRIAKVDDTIRQLAKEMLQTMYSSNGIGLAAPQVGVHKQLIVVDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP+I FS + V +EGCLSIP DV R I V + D + + Sbjct: 77 DPNDPANQPIILINPQITRFSQELCVVEEGCLSIPGVYLDVTRPKAIEVSFRDEQGKPRK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LLA +QHE+DHLNG++F+D ++ Sbjct: 137 LQATDLLARVIQHEMDHLNGVMFVDRVN 164 >gi|256827225|ref|YP_003151184.1| peptide deformylase [Cryptobacterium curtum DSM 15641] gi|256583368|gb|ACU94502.1| peptide deformylase [Cryptobacterium curtum DSM 15641] Length = 175 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 86/157 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V+ PDPILR+ + + + + +L M E MY +G GLAA Q+GVL RL+VID Sbjct: 3 IVLSPDPILRQRAEEADIADESLKSLAQQMAETMYENNGCGLAAPQVGVLKRLIVIDCDT 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+ INP I+ + ++ EGCLS+P ++R AF V Y D + I Sbjct: 63 ESEERNPITLINPVILETAGEWETEGEGCLSVPGITVPIRRRAFARVEYRDLDGNVCTIE 122 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 DGLL CLQHE+DHLNG + + R + Sbjct: 123 GDGLLGRCLQHEIDHLNGKTLFESCDPITRIAALRDY 159 >gi|302867673|ref|YP_003836310.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315505926|ref|YP_004084813.1| peptide deformylase [Micromonospora sp. L5] gi|302570532|gb|ADL46734.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029] gi|315412545|gb|ADU10662.1| peptide deformylase [Micromonospora sp. L5] Length = 167 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVI 61 +P+ I DP+LR S P+ ++++ L+ ++++ + G G+AA QIGV ++ V Sbjct: 1 MRPIRIIGDPVLRTPSEPVTSFDAELRALVTDLMDTLLGAPGRAGVAAPQIGVNAQVFVY 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D H + + SD+ +EGCLSIP R+ T D + + Sbjct: 61 DADGHRGH------MINPTLEVSDELQDDEEGCLSIPGLYFPTPRALHATAHGYDQHGEP 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + G LA LQHE DHL G L++D L R +++ Sbjct: 115 LTVTGSGFLARALQHETDHLRGRLYVDTLRGDTRRRALREIR 156 >gi|227834098|ref|YP_002835805.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] gi|227455114|gb|ACP33867.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975] Length = 210 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M + G+GLAA QIGV RL Sbjct: 7 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMHETMDAAHGVGLAANQIGVNKRL 66 Query: 59 VVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V D NP++ + T D EGCLS+P Sbjct: 67 FVYHCPDTDGPDGTELPEGGMRRGCVINPVLETSEIPETMPADDGSEDEGCLSVPGEGFP 126 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 R+ + V + + I G A LQHE HL+G ++ D L+ + K + Sbjct: 127 TGRADWARVTGKNEKGEDISIEGYGFFARMLQHETGHLDGFVYTDVLTGRYKRQAKKAIK 186 Query: 164 K 164 + Sbjct: 187 R 187 >gi|54027275|ref|YP_121517.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54018783|dbj|BAD60153.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 196 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI DP+L + + + ++ LI +M E M + +G+GLAA Q+GV RL V Sbjct: 1 MAILPIVIVGDPVLHNPTERVTQTPEELAGLIADMYETMDAANGVGLAANQVGVPLRLFV 60 Query: 61 IDLQDHAHRKNP---------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D P V +I D +EGCLS+P + R+ + Sbjct: 61 YDCPDAGPDGQPVRRRGAVINPVLETSEIPETMPDPDDDEEGCLSVPGEQFPTGRAEWAR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V +D N I G A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGIDENGGPVDIEGKGFFARMLQHEVGHLDGYLYVDKLVGRHARAAKKTIKR 173 >gi|145220094|ref|YP_001130803.1| peptide deformylase [Prosthecochloris vibrioformis DSM 265] gi|189083076|sp|A4SFP2|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265] Length = 190 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ + D +L + ++P++ ++ + LID+M E M + GIGLAA Q+G RL+V Sbjct: 1 MILPITTYTDEVLHQTAKPLKGVDGAVEELIDSMFESMENASGIGLAAPQVGHSLRLLVL 60 Query: 61 -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I PMV INP I++ + +EGCLS+P + DV+R + IT++Y D N Sbjct: 61 DISCMKSYEDVAPMVVINPHILSVKGKN-LMEEGCLSVPGVQGDVQRPSSITLKYRDRNF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Q G+LA LQHE+DHL+G LFID + + R I K++ + + Sbjct: 120 LEQTEEFSGMLARVLQHEIDHLSGTLFIDRMEKRDRRKIQKELDDIAKG 168 >gi|261419369|ref|YP_003253051.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530654|ref|YP_003671929.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766184|ref|YP_004131685.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|261375826|gb|ACX78569.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297253906|gb|ADI27352.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317111050|gb|ADU93542.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 157 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +PDPIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ V Sbjct: 1 MSVLPIVTYPDPILEQPCAPVTAFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D R + INP +I + + CLS P +V R+ F+ VR + + Sbjct: 61 IDVGDEHGR---IELINPVVIEARGEQVDVEG-CLSFPGLFGEVPRAKFVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA LQHE+DHL+G+LF + Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKV 146 >gi|119899899|ref|YP_935112.1| peptide deformylase [Azoarcus sp. BH72] gi|119672312|emb|CAL96226.1| probable peptide deformylase [Azoarcus sp. BH72] Length = 177 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R +RP+ ++ ++ +M+E M++ G+GLAA Q+G+ RLV+ Sbjct: 1 MILDILRMGDPRLMRAARPVCAFGTDELRRIVADMVETMHAAGGVGLAAPQVGIDLRLVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V NP + SD+ EGCLS+P R V R + R Sbjct: 61 FGFERSERYPDAPPVPFTVLANPVLTPLSDELEEGWEGCLSVPGLRGWVPRFRHLLYRGA 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + + +G A +QHE DHL+GIL+ +S R Sbjct: 121 DIDGKPLEREVEGFHARVVQHECDHLDGILYPARISDFSR 160 >gi|300784243|ref|YP_003764534.1| polypeptide deformylase [Amycolatopsis mediterranei U32] gi|299793757|gb|ADJ44132.1| polypeptide deformylase [Amycolatopsis mediterranei U32] Length = 166 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DPIL+ V P+ + + L+ ++++ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPILKSVCDPVTVFDEKLEALVRDLVDSVKPAGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP+I+ S++ EGCLS+P+ +R+ VR +D + + Sbjct: 61 YD-----VAGLTGYVVNPEIVELSEETHEINEGCLSVPELWFPTRRAMHAKVRGVDVHNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + +LA CLQHE DHL+G+L++D L+ ++ ++ Sbjct: 116 PIEVEGEDVLAQCLQHETDHLDGVLYLDRLTAERKKSALREAR 158 >gi|307729328|ref|YP_003906552.1| peptide deformylase [Burkholderia sp. CCGE1003] gi|307583863|gb|ADN57261.1| peptide deformylase [Burkholderia sp. CCGE1003] Length = 177 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160 >gi|85700139|gb|ABC74519.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 54/171 (31%), Positives = 101/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ + + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKEPQKKQ 171 >gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797] gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797] Length = 196 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 85/158 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P P LR S+P++ I ++ +++ NM ++MY GIGLAA Q+ + YRL V Sbjct: 1 MPALQIVNYPHPALRWKSKPVKSITPELRDIVRNMFDLMYEARGIGLAANQVALPYRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L + IT + +EGCLS+P DVKRS ITV D N Q Sbjct: 61 INLTSDPNEPEEEFVFINPEITKRKGTAEGEEGCLSLPQVYGDVKRSEEITVEAYDLNGQ 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I D L A +QHE DH+ GI+F D + KR+ I Sbjct: 121 LFEITLDDLAARAVQHEHDHIEGIMFPDRMVEAKRNEI 158 >gi|317012603|gb|ADU83211.1| peptide deformylase [Helicobacter pylori Lithuania75] Length = 174 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPKEDGVQHKEDCLEIINPKFIETGGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEAIELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|152991610|ref|YP_001357331.1| peptide deformylase [Sulfurovum sp. NBC37-1] gi|151423471|dbj|BAF70974.1| formylmethionine deformylase [Sulfurovum sp. NBC37-1] Length = 174 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + +VI+PD L+++SR + + + +L+D+M E M + +G+GLAA+Q+GV R ++I Sbjct: 1 MVREIVIYPDKRLKQISREVGSFDGALHDLLDDMYETMIARNGVGLAAIQVGVDLRALII 60 Query: 62 DLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ +H K + + +I D +QEGCLS+P DV+R+ + V Y Sbjct: 61 NVPLEKEEGEHDQPKENTLEMINPVIVEMDGKEKFQEGCLSVPGVYEDVERAKHVKVEYY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + II D LA +QHE+DHL+G +FI+ LS LKR K+ +K + + Sbjct: 121 DRNGEKHIIEDDDFLAIAMQHEIDHLDGKVFIEKLSFLKRKKFEKEWAKRQKAQ 174 >gi|261880357|ref|ZP_06006784.1| peptide deformylase [Prevotella bergensis DSM 17361] gi|270332901|gb|EFA43687.1| peptide deformylase [Prevotella bergensis DSM 17361] Length = 187 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54 + P+ + P+LR+V++ I + LID+M E M ++ G+GLAA QIG + Sbjct: 1 MILPIYTYGHPVLRKVAQDIPTDYPGLSQLIDDMFETMDASSGVGLAAPQIGKSVRVVVI 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ D ++A ++ + + + + +EGCLS+P V R + I V+Y Sbjct: 61 NLDVLKEDYPEYADFRHAYINPHIIEVDKKSEKVSMEEGCLSVPGLSEKVVRYSRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D Q + +G LA +QHE DHL G++++D ++ L++ +I K+ ++Q + Sbjct: 121 LDEELQPHDEWVEGYLARVMQHEFDHLEGVMYVDRITPLRKQLIRNKLKGIMQGK 175 >gi|118137648|pdb|2EW5|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137649|pdb|2EW6|A Chain A, Structure Of Helicobacter Pylori Peptide Deformylase In Complex With Inhibitor gi|118137650|pdb|2EW7|A Chain A, Crystal Structure Of Helicobacter Pylori Peptide Deformylase Length = 181 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 99/167 (59%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I Sbjct: 1 ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L ++ + F + +Y+EGCLS+P + +V+R + + Y + A Sbjct: 61 NLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFA 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L Sbjct: 121 EVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQ 167 >gi|78188466|ref|YP_378804.1| formylmethionine deformylase [Chlorobium chlorochromatii CaD3] gi|78170665|gb|ABB27761.1| peptide deformylase [Chlorobium chlorochromatii CaD3] Length = 199 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 99/166 (59%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60 + P+ I+ +LR+ ++P++ ++ +I LI M E M++ GIGLAA Q+G RL+V Sbjct: 12 MILPITIYSHEVLRQKAKPLKGVDKEIETLIAAMFESMHNASGIGLAAPQVGRSLRLLVL 71 Query: 61 -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + + PMV INP I++ ++ +EGCLS+P + DV R + IT++Y + Sbjct: 72 DVSCLKNYKDEKPMVVINPHILSVRGACAM-EEGCLSVPGVQGDVVRPSAITMKYRNERF 130 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + G++A LQHE+DHL+G LF+D + + + I ++++L Sbjct: 131 EELTAEFSGMVARVLQHEIDHLDGKLFVDRMDKRDKRKIQHELNEL 176 >gi|198282740|ref|YP_002219061.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666795|ref|YP_002424934.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247261|gb|ACH82854.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519008|gb|ACK79594.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 167 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 2/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M P++ +PD L+R + P+ + D+ + ID++ E MY+ G+G+AA Q+ R+V Sbjct: 1 MAVLPILTYPDSRLQRKADPVSVFDDDLHHFIDDLTETMYAGPGGVGIAAPQVDRAQRIV 60 Query: 60 VIDLQDHAHRKNPM-VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++D++ + + + + V +EGC+S+PD+ +V R+ I V+ D Sbjct: 61 IVDVRPKLGDDCHGLMVLINPELAAWEGMVVGREGCMSVPDFTGNVIRAERIQVQAQDVL 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + +G A +QHE+DHL+G+LF+D L K D+ +K Sbjct: 121 GRERSYECEGFEARAVQHEMDHLDGLLFLDRLVSRKVDLFRRK 163 >gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068] gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068] Length = 222 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P LR+V++PI+++++++ ++ M ++MY GIGLAA Q+ + RL VI Sbjct: 29 TRLQIITYPHPTLRKVAKPIKRVDAELRAMVAQMFDLMYEAKGIGLAANQVDLPLRLFVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +L + +VFINP +++ + +EGCLS+P V R + V + Q Sbjct: 89 NLTAEKGKGEELVFINP-VLSHPKGSAEAEEGCLSLPGVYGQVVRPKTVQVNAYNLQGQE 147 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 GLLA C+QHE DHL+G++F D +S R + ++ + Sbjct: 148 ISAEVGGLLARCIQHENDHLDGVMFPDRMSESSRVELGGELQE 190 >gi|302525482|ref|ZP_07277824.1| peptide deformylase [Streptomyces sp. AA4] gi|302434377|gb|EFL06193.1| peptide deformylase [Streptomyces sp. AA4] Length = 166 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L F DP+L+ V P+ +S I L+ ++L+ + GLAA QIGV R+ Sbjct: 1 MAMRELRYFGDPVLKSVCDPVTTFDSKIEALVKDLLDSVQPEGRAGLAAPQIGVGLRVFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D INP+I+ S++ EGCLS+P+ R+ VR +D + Sbjct: 61 YD-----VGGLTGYVINPEIVHLSEETHEIGEGCLSVPELWFPTVRAKHAVVRGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +LA CLQHE DHL+G L++D L+ ++ ++ Sbjct: 116 PIEVEGVDVLAQCLQHETDHLDGKLYLDRLTPDRKKQALREAR 158 >gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917] Length = 201 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 92/150 (61%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ I K+++ + +L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 31 LEIHTLGDRVLRQPAKRISKVDAAVRDLARDMLRSMYTARGIGLAAPQVGVHKQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I + S Y+EGCLSIP DV R + I + Y D + + Sbjct: 91 DIENAAAPPLVLINPEITSASASVDTYEEGCLSIPGVYLDVVRPSAIQLSYRDEMGRPRT 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 151 MKADGLMARCIQHEMDHLKGVLFVDRVTDE 180 >gi|228470000|ref|ZP_04054916.1| peptide deformylase [Porphyromonas uenonis 60-3] gi|228308381|gb|EEK17219.1| peptide deformylase [Porphyromonas uenonis 60-3] Length = 188 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 6/175 (3%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K P+ ++ P+LR +S I ++ LI +M + MY +DGIGLAA QIG RL Sbjct: 1 MAKTLPIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQ 60 Query: 60 VIDLQDHAHRKNPM-----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VID V IN + + S+D EGCLS+P V R I V Y Sbjct: 61 VIDATPLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 M+ + Q + G A +QHE DHL+G LF+DH+S +++ +I KK+ +V R Sbjct: 121 MNEQFEPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGR 175 >gi|164687803|ref|ZP_02211831.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] gi|164603078|gb|EDQ96543.1| hypothetical protein CLOBAR_01447 [Clostridium bartlettii DSM 16795] Length = 157 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+LR+ S+ +++IN I+ L+D+M + MY DG+GLAA Q+G+L R+VV Sbjct: 12 MALRQIVKIGEPVLRKKSKVVKEINDRIIELLDDMADTMYEADGVGLAAPQVGILKRVVV 71 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D I + + EGCLS+P DV R + VR + + Sbjct: 72 IDIGDGLIELINPEIIETEGEYLDN------EGCLSVPGECGDVLRPYRVKVRAQNRFGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I + LLA HE+DHL+GIL++D + + Sbjct: 126 TVEIEGEELLARAFCHEIDHLDGILYVDKVIK 157 >gi|241204791|ref|YP_002975887.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858681|gb|ACS56348.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L ++L M + G+G+ A IGV V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTAFDSSLTALAGDLLATMRAAPGVGITAAHIGV-VSRVT 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D A +NP I FS + + EG +S+P +V R I RY D Sbjct: 60 VLELDKADGVRLY--VNPHITWFSQETMSHVEGSVSMPGATDEVTRPRAIRFRYQDAEGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 VHEDGAEDFLAICVQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 161 >gi|84500578|ref|ZP_00998827.1| peptide deformylase [Oceanicola batsensis HTCC2597] gi|84391531|gb|EAQ03863.1| peptide deformylase [Oceanicola batsensis HTCC2597] Length = 165 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +PD LR + + + + +M++ M + G+GLAAVQIGV+ RL V Sbjct: 1 MAVRPILRWPDRRLRAAAADVVDVTDAVRATWADMIDTMEAMPGVGLAAVQIGVMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+++ S + ++E +P A + R +TVR+++ Sbjct: 61 VDASGERGQAV--RMANPEVLHASVEPRDHEEASPCLPGVSARITRPRAVTVRFLNAEGA 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHL G ++ D LS++KRDM+ ++ K Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARK 162 >gi|313144549|ref|ZP_07806742.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] gi|313129580|gb|EFR47197.1| peptide deformylase [Helicobacter cinaedi CCUG 18818] Length = 179 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +P+PILR+ S +E + + L+D+M E M + G+GLAA+Q+G+ R++VI Sbjct: 8 ATLAILKYPNPILRQKSTKVESFDESLHTLLDDMYETMIESGGVGLAAIQVGIAKRILVI 67 Query: 62 D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + +D K ++ + +D ++EGCLS+P++ VKR ++V Y D Sbjct: 68 NLPRDEDKQQYKEDLLEVINPTFLTQEDDIEWEEGCLSVPEFYESVKRFNKVSVAYKDRF 127 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I+ A+G LA LQHE+DHLNGILF+D L L+R Sbjct: 128 GNDKILQAEGFLAVALQHEIDHLNGILFVDKLPILRR 164 >gi|238019378|ref|ZP_04599804.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] gi|237864077|gb|EEP65367.1| hypothetical protein VEIDISOL_01242 [Veillonella dispar ATCC 17748] Length = 162 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++++ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQIAEPVEHVNKKLRALIDDMAETMYETEGVGLAAPQVAVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+I + CLS+P Y DV+R ITV+ +D + + Sbjct: 61 V---DDHAGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFDKITVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|319442115|ref|ZP_07991271.1| peptide deformylase [Corynebacterium variabile DSM 44702] Length = 166 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +F DP+LR V+ I+ + + L+++M E M + G+GLAA Q+GV R+ Sbjct: 1 MTALDIRLFGDPVLRTVAENIDDPTDPTLRTLVEDMYETMDAAGGVGLAANQVGVTRRVF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D +NP + +EGCLS+PD DV R+A + + + + Sbjct: 61 VYDCDGDRG-----HIVNPVWEAVGAETQTGREGCLSVPDAGGDVTRAATVHLTGVTVDG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + GL+A C+QHE DHL+G+++ + R + Sbjct: 116 EEVDREVTGLMARCVQHETDHLDGVMYFQRMESGTRREVM 155 >gi|117621144|ref|YP_856896.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562551|gb|ABK39499.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 166 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PDP L + +E I + + LID+MLE +Y + +GIGLAA Q+G +V Sbjct: 1 MAMLDILTVPDPRLGIKAEQVEDI-AAVQGLIDDMLETLYATDNGIGLAATQVGRKEAIV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +IDL + + + +T + ++ QEGCLS+PDY ADV+R + V +D + Sbjct: 60 IIDLSEKRDQPL---VLINPQVTSGTEPALGQEGCLSVPDYYADVERYGSVVVSALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + LA +QHE+DHL G +FID+LS LKR M KK+ K ++ Sbjct: 117 VPITVKSSDFLAIVMQHEIDHLQGKVFIDYLSPLKRKMALKKVKKHLK 164 >gi|307637482|gb|ADN79932.1| Peptide deformylase [Helicobacter pylori 908] gi|325996072|gb|ADZ51477.1| Peptide deformylase [Helicobacter pylori 2018] gi|325997668|gb|ADZ49876.1| Peptide deformylase [Helicobacter pylori 2017] Length = 174 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 102/171 (59%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + +S + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVVSFDSKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + + + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKWIETKGSMMYREGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +I+ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|167563193|ref|ZP_02356109.1| peptide deformylase [Burkholderia oklahomensis EO147] Length = 177 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L V++P+E N ++ L+ +M E M+ +G GLAA Q+GV ++++ Sbjct: 1 MIREILKMGDQRLLEVAKPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510] gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510] Length = 190 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 4/166 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ +PILR++++PI + + I L +M+ M G+GLAA Q+ R++ Sbjct: 1 MPVLPIARMGNPILRQIAQPIADPTDPAIARLAADMIATMLDAPGVGLAAPQVSESCRII 60 Query: 60 VID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V + V +NP I +DD ++ EGCLSIP R V R I R Sbjct: 61 VFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGWEGCLSIPGLRGLVPRHTRIRYRGHG 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A G A +QHE+DHL+G+L++D + L+ + T++M Sbjct: 121 LDGARIEREASGFHARVVQHEVDHLDGVLYLDRMDDLRLLVCTEEM 166 >gi|222086074|ref|YP_002544606.1| peptide deformylase [Agrobacterium radiobacter K84] gi|221723522|gb|ACM26678.1| peptide deformylase [Agrobacterium radiobacter K84] Length = 164 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPDP+L+ P+ + + +L ++++ M + G+G+ A IGVL R+ V Sbjct: 1 MSVRSIIRFPDPLLKTTCAPVTIFDDGLHSLAIDLVDTMRAAPGVGITAAHIGVLRRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+L + +INP+I FS++ + EG +S+P +V R I RY D + + Sbjct: 61 IELSREDGIRT---YINPEITWFSEETMRHMEGSVSMPGITDEVVRPRAIRFRYQDIDGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+G+ ++ LS+LKRD + KK K Sbjct: 118 AHEAAAEDFLAICIQHEVDQLDGLFWLQRLSKLKRDRLVKKWEK 161 >gi|153010428|ref|YP_001371642.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] gi|151562316|gb|ABS15813.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188] Length = 166 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ + +SD+ L ++L+ M + GIG+ A +G+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVAEPVTQFDSDLQELGTDLLDTMRAAPGIGITAPHVGISKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L P ++NP+I+ SD+ +QEG +S+P DV+R A I +RY D + Sbjct: 61 LELPTE---LTPKFYVNPEIVWASDEKIHHQEGSVSMPGVVDDVERHARIKIRYQDLSGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q ++GLLA C QHE+D L+GI +I LSRL+RD + K+ K + R Sbjct: 118 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLIKRFEKSQRQR 166 >gi|256789194|ref|ZP_05527625.1| polypeptide deformylase [Streptomyces lividans TK24] gi|23396573|sp|Q9FCA2|DEF2_STRCO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 179 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 13 VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 73 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G ++ D L+ + + +++++ Sbjct: 133 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVAR 174 >gi|21219721|ref|NP_625500.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289773087|ref|ZP_06532465.1| polypeptide deformylase [Streptomyces lividans TK24] gi|9716195|emb|CAC01493.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)] gi|289703286|gb|EFD70715.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 217 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + ++ L++++ MY+ G+GLAA Q+G R+ V D Sbjct: 51 VRPLGLLGDPVLHARCAEVTDFGPELAALVEDLFATMYAAHGVGLAANQVGEAVRVFVYD 110 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + Sbjct: 111 CPDDEDERHLGHVVNPRLVETGGVVVRGPEGCLSLPGLEAGTERYDEAVVTGFTVAGEPV 170 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G A CLQHE DHL G ++ D L+ + + +++++ Sbjct: 171 TVRGTGFFARCLQHECDHLEGRVYADRLTGRRHRKLMRQVAR 212 >gi|295094723|emb|CBK83814.1| peptide deformylase [Coprococcus sp. ART55/1] Length = 155 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+V RP+EK++ + LID+M + MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRYDGDDILRKVCRPVEKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + +IT SD +EGCLS+P V R + + D N + Sbjct: 61 IDVGDDNPL-----CLINPVITESDGEQTGEEGCLSLPGKFGTVTRPMHVICKAFDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA + HELDHL+G L+ D + Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKDLVED 147 >gi|269797908|ref|YP_003311808.1| peptide deformylase [Veillonella parvula DSM 2008] gi|269094537|gb|ACZ24528.1| peptide deformylase [Veillonella parvula DSM 2008] Length = 162 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++V+ P+E +N + LID+M E MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLDVVKAGHPVLKQVAEPVEHVNKKLRVLIDDMAETMYKTEGVGLAAPQVAVAKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+I + CLS+P Y DV+R +TV+ +D + + Sbjct: 61 V---DDQSGSGLIALINPEITHAEGSQVGPEG-CLSVPGYFGDVERFNKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I A+G LA QHE+DHL G LFI+ + L+ Sbjct: 117 KVTIKAEGFLARIFQHEIDHLEGHLFIEKATNLR 150 >gi|227505915|ref|ZP_03935964.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227197437|gb|EEI77485.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 206 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 23/186 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +P+VI DP+L + P+ + + ++ LI +M E M G+GLAA Q+G+ RL Sbjct: 1 MTIRPIVIHGDPVLHNPTEPVTEPIDSPELQELIADMYETMDVAHGVGLAANQVGINKRL 60 Query: 59 VVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 V D NP++ + D EGCLS+P Sbjct: 61 FVYHCPDTDGPEGTELPADKAGMRKGCVINPVLETSEIPEGMPADDGSEDEGCLSVPGEG 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R+ + V D + I G A LQHE HL+G ++ D L+ ++ Sbjct: 121 FPTGRADWARVTGKDEHGNDISIEGYGFFARMLQHETGHLDGFVYTDVLTG----RFKRQ 176 Query: 162 MSKLVQ 167 K+++ Sbjct: 177 AKKIIK 182 >gi|227495080|ref|ZP_03925396.1| peptide deformylase [Actinomyces coleocanis DSM 15436] gi|226831532|gb|EEH63915.1| peptide deformylase [Actinomyces coleocanis DSM 15436] Length = 163 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR I I+ + L++++LE + GLAA QIGV R Sbjct: 1 MTYREIRVIGDPILRTPCEWITDIDDKVKGLVEDLLENVDMDGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + ++ EGCLS+P KR+ + V ++ + + Sbjct: 61 WNIDGDIGYVLNPKLVEASMEE---EYQDGDEGCLSVPGLWFPTKRAWYARVEGINLDGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I+ + L+A CLQHE DHL G+L++D L R R K++ + Sbjct: 118 KIIVEGEELMARCLQHECDHLEGMLYLDRLDRAMRRKAMKEVRE 161 >gi|260427470|ref|ZP_05781449.1| peptide deformylase [Citreicella sp. SE45] gi|260421962|gb|EEX15213.1| peptide deformylase [Citreicella sp. SE45] Length = 164 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+E I +I + +M++ M + G+GL A QIGV+ RL V Sbjct: 1 MTARLCIPWPDKRLRTPAAPVEAITDEIRAIWTDMIDTMEAMPGVGLGAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + NP+++ S + E ++P A + R + VR+++ + Sbjct: 61 VDASEKRGEAV--RMANPEVLHASVKLRSHDEASPNLPGVWASIDRPRAVAVRFLNAEGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHLNG ++ DHLS++KRDM+ ++ K Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRMYFDHLSKVKRDMLLRRAKK 162 >gi|307329984|ref|ZP_07609136.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306884360|gb|EFN15394.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + ILRR R + + ++ LID+M MY +G GLAA Q+ V RL V D Sbjct: 26 RRITEVGEEILRRSCREVTEFGTPELSALIDDMFLTMYIAEGAGLAANQVDVELRLFVYD 85 Query: 63 LQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D ++ INP + EGCLS+P R DV R+ VR +D + Sbjct: 86 CPDDNGVRHVGHIINPVLDQPDPAERLLIEDAEGCLSVPGARMDVPRTDRTVVRGVDKDG 145 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +I G A CLQHE DHL+G L+ID LS+ R ++M+ L + Sbjct: 146 NPLVIEGTGYFARCLQHEADHLSGHLYIDRLSKRDRKDALRQMTDLHEQ 194 >gi|72162832|ref|YP_290489.1| peptide deformylase [Thermobifida fusca YX] gi|71916564|gb|AAZ56466.1| peptide deformylase [Thermobifida fusca YX] Length = 185 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+P+V+F DP+L + PI N LI ++++ + + G+AA QIGV R Sbjct: 1 MTKRPIVLFGDPVLSTPAAPITTFNRHTEALIRDLMDTVDAPGRAGVAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + V + + EGCLS+P R+ V+ +D + Sbjct: 61 YRVDGQIG----YVINPEIVELSEEIQEDGNEGCLSVPGLWYPTPRARRAVVKGVDLRNE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ G++A CLQHE DHL G L++D L R +++ + Sbjct: 117 PVVVAGTGVMARCLQHETDHLAGKLYLDRLPPETRRAAMREIRR 160 >gi|283955379|ref|ZP_06372878.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] gi|283793139|gb|EFC31909.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 414] Length = 676 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 96/157 (61%), Gaps = 3/157 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ NL+D+M E M +++G+GLAA+Q+ V R++++ Sbjct: 1 MVRKIITYPNPKLFLSSETVNKFDAELHNLLDDMYETMIASNGVGLAAIQVDVPLRVLLV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + + INP+II ++ EGCLS+PD+ +VKR + ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHVLLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKR 157 >gi|83589748|ref|YP_429757.1| peptide deformylase [Moorella thermoacetica ATCC 39073] gi|123766806|sp|Q2RK25|DEF_MOOTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83572662|gb|ABC19214.1| peptide deformylase [Moorella thermoacetica ATCC 39073] Length = 155 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ DP+LR S+P+ KI S++ L+DN+ + MY G+GLAA QIGVL R++V Sbjct: 1 MAIHKILTLGDPLLREKSQPVRKITSNVWKLLDNLADTMYDAPGVGLAAPQIGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + I EGCLSIP + +V R+A +TVR +D + + Sbjct: 61 VDVGEGLTELINPEVIAASGEEV------GAEGCLSIPGAQGEVPRAAVVTVRGLDRHGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I A+GL A LQHE+DHL+GILFID + R Sbjct: 115 VREIRAEGLYARALQHEIDHLDGILFIDKVVRW 147 >gi|83941566|ref|ZP_00954028.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847386|gb|EAP85261.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 155 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L V P+ +I LI +M E MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFETMYAAPGRGLAAPQVGRTERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + Sbjct: 61 FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE DHL+GI+ D + Sbjct: 120 THERKFTGAEAVIVQHEYDHLDGIVIYDRV 149 >gi|126209175|ref|YP_001054400.1| peptide deformylase [Actinobacillus pleuropneumoniae L20] gi|165977146|ref|YP_001652739.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|126097967|gb|ABN74795.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877247|gb|ABY70295.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 154 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 3/151 (1%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 P+ +++ ++ ID+M + MY +GIGLAA Q+GVL R++ ID++ + + Sbjct: 2 CEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVITIDIEGDKTNQV---VLI 58 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 I S + +EGCLSIP +RA V R + V+ ++ + I ADGL A C+QHE Sbjct: 59 NPEILESCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGEEVIYEADGLFAICIQHE 118 Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +DHLNG+LF+DH+S LKR I +KM KL + Sbjct: 119 IDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 149 >gi|170748510|ref|YP_001754770.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] gi|170655032|gb|ACB24087.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831] Length = 165 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV+FPDP L R + P++ + L D++ + + + IGL A IGV RLVV Sbjct: 1 MPARPLVLFPDPRLTRPAEPVDAFGPSLQALADDVRDTLMAESAIGLTAPHIGVPARLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + + +++NP + S + + + EG +S+P R + R A I + Y D + Sbjct: 61 VRMSPNESAR---IYVNPVVSWASPETATHDEGSVSMPGVRERIARPARIRLSYRDLDGS 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +G A LQHE+D L+G+ +I LSRLKR+ + K+ K Sbjct: 118 AREAETEGFPAAVLQHEIDQLDGVFWIARLSRLKRERLLKRFEK 161 >gi|56417231|ref|YP_154305.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222475595|ref|YP_002564012.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] gi|254995399|ref|ZP_05277589.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Mississippi] gi|255003586|ref|ZP_05278550.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Puerto Rico] gi|255004717|ref|ZP_05279518.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Virginia] gi|56388463|gb|AAV87050.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. St. Maries] gi|222419733|gb|ACM49756.1| N-formylmethionylaminoacyl-tRNA deformylase [Anaplasma marginale str. Florida] Length = 185 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 74/184 (40%), Positives = 104/184 (56%), Gaps = 17/184 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M PL+ PD L S + + L +NMLE MY GIGLAAVQ+GV R+ Sbjct: 1 MAVLPLLTLPDSRLSLCSEEVHAADFGPQLETLTNNMLETMYHNKGIGLAAVQVGVHKRI 60 Query: 59 VVID---------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 V+D + ++ P+V +NP ++ S+ + +EGCLS+P YR Sbjct: 61 CVVDLEYGSDRYEIPEDDGVGEYRATCGPVVILNPIVVEESEQLATMEEGCLSVPGYRET 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V+R I V+Y D N Q + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ Sbjct: 121 VQRPERIVVQYTDLNRQTKYIKACGLLARCLQHELDHLNGVVFLQRVSKLKRDMVMEKIR 180 Query: 164 KLVQ 167 K + Sbjct: 181 KASK 184 >gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39930841|sp|Q7V3K7|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 201 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR ++ I K+++ I NL +ML+ MY+ GIGLAA QIG+ L+VID+ Sbjct: 31 LEIYKLGDDVLRENAKRISKVDNSIRNLAKDMLQSMYAAKGIGLAAPQIGIKKELLVIDV 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I + + Y+EGCLSIP +V R + I +R+ D + + Sbjct: 91 NFEDAAAEPLILINPEITDYGTTLNSYEEGCLSIPGVYLNVVRPSTIKLRFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLA C+QHE+DHLNG+LF+D ++ ++ + K++ K Sbjct: 151 MKADGLLARCIQHEMDHLNGVLFVDRVTS--KEDLNKELIK 189 >gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 196 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ I ++N +I L +ML+ MYS DGIGLAA Q+G+ R++V+DL Sbjct: 21 IYRMGDKVLRQPAKRISQVNDEIRQLARDMLQTMYSFDGIGLAAPQVGIPKRMIVVDLYP 80 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+V INP+I + + QEGCLSIP +V R I V + D + + + Sbjct: 81 DKPEVPPLVLINPEIREYIGEAVAGQEGCLSIPGVFCEVMRPEGIVVSFKDETGRPRTLR 140 Query: 126 ADGLLATCLQHELDHLNGILFIDHLS 151 AD LLA +QHE+DHLNG+LF+DH+ Sbjct: 141 ADDLLARVIQHEIDHLNGVLFVDHVE 166 >gi|40063276|gb|AAR38094.1| polypeptide deformylase [uncultured marine bacterium 578] Length = 165 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 69/166 (41%), Positives = 105/166 (63%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD LR +++P+ +NSDI + +M E MY GIGLAA Q+ R++VI Sbjct: 1 MILDILKYPDKRLRTIAKPVVSVNSDIKKQVKDMFETMYDAPGIGLAATQVNFHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + ++ P INP+II S + +EGCLS+PDY +VKR+ I V ++ + Sbjct: 61 DISEDCNQ--PFCLINPEIIEKSGEIEW-EEGCLSVPDYYENVKRANKIKVCALNEHGNT 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I A+ +LA C+QHE+DHLNGILF+DHLS+LK+ + KK K + Sbjct: 118 FDIEANEMLAICIQHEMDHLNGILFVDHLSKLKQKRLQKKAEKQDK 163 >gi|183598657|ref|ZP_02960150.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] gi|188020843|gb|EDU58883.1| hypothetical protein PROSTU_02064 [Providencia stuartii ATCC 25827] Length = 167 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ I + LID++L+ MY + +GIGLAA QIG ++ Sbjct: 1 MAVRAIIEIPDERLRVKCDPVTDIAAA-QPLIDDLLDTMYSTDNGIGLAATQIGATLSVM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ ++ R PMVF+NP+II + S + CLS+P+ ADV R + V+ +D + Sbjct: 60 VIDISEN--RDQPMVFVNPEIIESEGETSYQEG-CLSVPEIYADVARFKRVKVKALDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + I +D LA +QHE+DHL+G +F+DHLS LKR+M+ KK+ K +LR Sbjct: 117 KAFITDSDEFLAIVMQHEIDHLHGKVFLDHLSTLKRNMLLKKLKKQQRLR 166 >gi|254451672|ref|ZP_05065109.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198266078|gb|EDY90348.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 165 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + +P LR + + +I DI L D M+ M + G+GLAA Q+GV RL V Sbjct: 1 MPHRPFIPWPAKALRTPAVEVTEITDDIRALWDEMINAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D NP I+ S + +++E ++P A ++R +TVR+M+ Sbjct: 61 VDASDKRGSAI--RMANPTILHASHELRLHEEASPNLPGLSASLERPRAVTVRFMNDAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRRDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium HF4000_04C13] Length = 180 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LRR + + ++ ++ L D+M MY GIGLAA Q+GV R V Sbjct: 1 MAPHQIRLIGDPVLRRPATDVTDVDGALVRLTDDMFTTMYEAPGIGLAAPQVGVQKRFFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + A I ++EGCLS+PD ++ R + + +D + Sbjct: 61 YDHGEGAGVILNPRIIESDGE------WTFEEGCLSVPDLTWEITRPKQVHLVGVDLDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I AD + A QHE+DHL+G+L +DHL + + + ++ R Sbjct: 115 EVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQAREARRALREMTMSR 163 >gi|294141147|ref|YP_003557125.1| polypeptide deformylase [Shewanella violacea DSS12] gi|293327616|dbj|BAJ02347.1| polypeptide deformylase [Shewanella violacea DSS12] Length = 163 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R +R +E I+S + ID++LE +Y DGIGLAA Q+G + ++ Sbjct: 1 MAVLDILTIPDERLKRKARTVEDIDS-VQGFIDDLLETLYDTEDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + + I + + +EGCLSIP YRA V RS +TV+ +D Sbjct: 60 VIDLSEERDQPQ---VLINPEIVATQGDFIGEEGCLSIPGYRAKVARSEQVTVKALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I D LA LQHE+DHL GI+F DHLS+LK+ + KK+ K Sbjct: 117 KPFEIETDTFLAIVLQHEMDHLQGIVFTDHLSKLKQQIALKKVKK 161 >gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales bacterium] Length = 166 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 5/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV ++ +PILR VS +E + D+ + + + MY DG+GLAA Q+ V R+ V Sbjct: 1 MVGMKVIHIGNPILRNVSESVEVFDDDLRAFVKELSKTMYVEDGVGLAAPQVAVSRRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D INP+I++ SD+ +EGCLSIP AD+ R + + + Y D Q Sbjct: 61 YDPGDGLRV-----VINPEILSKSDEIVKMEEGCLSIPGIYADIDRPSAVRIHYQDEYGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 H A +QHE DHL G+LF+D+LS KR M+ K++++++ Sbjct: 116 HHEEDLTEYPARIVQHESDHLEGVLFVDYLSASKRAMLKPKLNQIIKE 163 >gi|218442239|ref|YP_002380568.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218174967|gb|ACK73700.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 176 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + +PILR+ ++ +E I + LID+++ S +G+G+AA Q+ YRL Sbjct: 1 MTQDLEIAQLGNPILRQNAQSVENITDITLQTLIDDLIATAASANGVGIAAPQVSQSYRL 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ +A NP INP+II+ S + EGCLS+P R V R ITV Sbjct: 61 FIVASRPSPRYPNAPEMNPTPMINPRIISHSPEKVKGWEGCLSVPGLRGLVPRYHTITVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y+D Q +A QHELDHL+GILF+D L + ++ K++ Sbjct: 121 YLDRYGNLQRQELTDFVARIFQHELDHLDGILFVDRLESSQDLYTEEEYQKII 173 >gi|163743814|ref|ZP_02151187.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] gi|161382963|gb|EDQ07359.1| peptide deformylase [Phaeobacter gallaeciensis 2.10] Length = 169 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +PDP+L ++PI D+ L +ML+ MY+ G GLAA Q+GVL RL V Sbjct: 1 MAVLPIRAWPDPVLSTPAKPIATP-RDVETLARDMLDTMYAAPGRGLAAPQVGVLIRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++P+V +NP I+ S + + EGCLSI +V R A++ + + D Sbjct: 60 MDTTWKEGTRDPLVCVNPDIVALSAETATMSEGCLSIKGVSLEVTRPAWVDLAWSDLQGV 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A C+QHE DHL G + D +S Sbjct: 120 RHQRRFEGFAAACVQHEYDHLEGRVTFDRVSP 151 >gi|50955168|ref|YP_062456.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951650|gb|AAT89351.1| polypeptide deformylase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 163 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +F DP+L+ +S P+ +++ + +L+ ++++ + G+AA QIGV R Sbjct: 1 MTERQIRLFGDPVLKTLSEPVGELDESVRSLVQDLVDTVLPPGRAGVAAPQIGVNLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S + + EGCLS+P R F VR +D + Sbjct: 61 YNVDGEVG-----YILNPELVEVSGEPELVDEGCLSVPGLWFKTVRYPFARVRGIDLDGA 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + G++A LQHE DHL G L++D L R R K++ + Sbjct: 116 EIELSGTGVMAQALQHETDHLEGKLYLDRLDRGSRREAMKQIRE 159 >gi|149922552|ref|ZP_01910982.1| peptide deformylase [Plesiocystis pacifica SIR-1] gi|149816579|gb|EDM76074.1| peptide deformylase [Plesiocystis pacifica SIR-1] Length = 177 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PDP LR + + +N +I +L+ +M + MY+ + G+AA+Q+G L R+ + Sbjct: 1 MAVLEIVKYPDPRLREDTFDVADVNDEIRSLVRDMTDTMYALNAAGIAAIQVGRLERIFL 60 Query: 61 IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ID + +P+VFINP+++ V +EGCLS PD DVKR + VR +D N Sbjct: 61 IDGKVAGGDENSDPLVFINPEVVETGKGQVVAEEGCLSFPDVFVDVKRPRWAKVRALDVN 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + D L LQHE DHL G L ID + +K++MI +KM + Sbjct: 121 GESFEVDGDELFGRALQHEHDHLTGKLMIDLVGMVKKEMIKRKMKR 166 >gi|307128595|ref|YP_003880625.1| peptide deformylase [Candidatus Sulcia muelleri CARI] gi|306483057|gb|ADM89927.1| peptide deformylase [Candidatus Sulcia muelleri CARI] Length = 172 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 98/162 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ +PILR+ I++ +I LI NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPILIYGNPILRKKCIEIDQSYQNINLLIKNMYDTMYKAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINPKII + +EGCLSIP+ ++KR + + Y D N + Sbjct: 61 EYNNFYKKKFKKVFINPKIIKNYGYDLISKEGCLSIPNIIENIKRKNNLIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + +GLL+ +QHE DH++G LFIDH+S +K +I K+ Sbjct: 121 YRQHFNGLLSIIIQHEYDHIDGKLFIDHISDMKNILIKNKLK 162 >gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605] gi|123756848|sp|Q3AHC4|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605] Length = 201 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 31 LEIHTLGDEVLRQPARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I S Y+EGCLSIP DV R I + + D + + Sbjct: 91 DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL+A C+QHE+DHLNG+LF+D ++ +D + K++ + Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELKE 189 >gi|312127907|ref|YP_003992781.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] gi|311777926|gb|ADQ07412.1| peptide deformylase [Caldicellulosiruptor hydrothermalis 108] Length = 166 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGAIELVNPEIEQVEGSAVDV------EGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|256587795|gb|ACU98927.1| polypeptide deformylase [Propionibacterium jensenii] Length = 200 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +P+L ++P+ + D+ LI +M + DG+GLAA Q+G+ L + Sbjct: 20 TLRRVTRWSEPVLHASTQPVTDFDDDLHELIRDMFVTNAAADGVGLAATQVGLSLSLFIY 79 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + NP+ + EGCLS P + R T D Sbjct: 80 NCPDDDGVVHKGAICNPQVTLPTGRDRNLVSVDEGCLSWPGGFQPLARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + G A CLQHE DH NGI+F D LS+ R + ++ L Sbjct: 140 GTPLSVTGTGYFARCLQHETDHCNGIVFGDRLSKRSRRKLDEQHENL 186 >gi|50843003|ref|YP_056230.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289426491|ref|ZP_06428234.1| peptide deformylase [Propionibacterium acnes SK187] gi|289428707|ref|ZP_06430390.1| peptide deformylase [Propionibacterium acnes J165] gi|295131074|ref|YP_003581737.1| peptide deformylase [Propionibacterium acnes SK137] gi|50840605|gb|AAT83272.1| polypeptide deformylase [Propionibacterium acnes KPA171202] gi|289153219|gb|EFD01937.1| peptide deformylase [Propionibacterium acnes SK187] gi|289158105|gb|EFD06325.1| peptide deformylase [Propionibacterium acnes J165] gi|291377293|gb|ADE01148.1| peptide deformylase [Propionibacterium acnes SK137] gi|313763558|gb|EFS34922.1| peptide deformylase [Propionibacterium acnes HL013PA1] gi|313773497|gb|EFS39463.1| peptide deformylase [Propionibacterium acnes HL074PA1] gi|313793950|gb|EFS41974.1| peptide deformylase [Propionibacterium acnes HL110PA1] gi|313801337|gb|EFS42588.1| peptide deformylase [Propionibacterium acnes HL110PA2] gi|313807983|gb|EFS46464.1| peptide deformylase [Propionibacterium acnes HL087PA2] gi|313811548|gb|EFS49262.1| peptide deformylase [Propionibacterium acnes HL083PA1] gi|313813394|gb|EFS51108.1| peptide deformylase [Propionibacterium acnes HL025PA1] gi|313816738|gb|EFS54452.1| peptide deformylase [Propionibacterium acnes HL059PA1] gi|313819551|gb|EFS57265.1| peptide deformylase [Propionibacterium acnes HL046PA2] gi|313822126|gb|EFS59840.1| peptide deformylase [Propionibacterium acnes HL036PA1] gi|313823640|gb|EFS61354.1| peptide deformylase [Propionibacterium acnes HL036PA2] gi|313825965|gb|EFS63679.1| peptide deformylase [Propionibacterium acnes HL063PA1] gi|313829432|gb|EFS67146.1| peptide deformylase [Propionibacterium acnes HL063PA2] gi|313831289|gb|EFS69003.1| peptide deformylase [Propionibacterium acnes HL007PA1] gi|313834899|gb|EFS72613.1| peptide deformylase [Propionibacterium acnes HL056PA1] gi|313839941|gb|EFS77655.1| peptide deformylase [Propionibacterium acnes HL086PA1] gi|314919327|gb|EFS83158.1| peptide deformylase [Propionibacterium acnes HL050PA1] gi|314920764|gb|EFS84595.1| peptide deformylase [Propionibacterium acnes HL050PA3] gi|314924710|gb|EFS88541.1| peptide deformylase [Propionibacterium acnes HL036PA3] gi|314930643|gb|EFS94474.1| peptide deformylase [Propionibacterium acnes HL067PA1] gi|314954401|gb|EFS98807.1| peptide deformylase [Propionibacterium acnes HL027PA1] gi|314957515|gb|EFT01618.1| peptide deformylase [Propionibacterium acnes HL002PA1] gi|314962119|gb|EFT06220.1| peptide deformylase [Propionibacterium acnes HL002PA2] gi|314963697|gb|EFT07797.1| peptide deformylase [Propionibacterium acnes HL082PA1] gi|314968475|gb|EFT12573.1| peptide deformylase [Propionibacterium acnes HL037PA1] gi|314974164|gb|EFT18260.1| peptide deformylase [Propionibacterium acnes HL053PA1] gi|314976545|gb|EFT20640.1| peptide deformylase [Propionibacterium acnes HL045PA1] gi|314978999|gb|EFT23093.1| peptide deformylase [Propionibacterium acnes HL072PA2] gi|314984364|gb|EFT28456.1| peptide deformylase [Propionibacterium acnes HL005PA1] gi|314986554|gb|EFT30646.1| peptide deformylase [Propionibacterium acnes HL005PA2] gi|314990913|gb|EFT35004.1| peptide deformylase [Propionibacterium acnes HL005PA3] gi|315079547|gb|EFT51540.1| peptide deformylase [Propionibacterium acnes HL053PA2] gi|315081224|gb|EFT53200.1| peptide deformylase [Propionibacterium acnes HL078PA1] gi|315083591|gb|EFT55567.1| peptide deformylase [Propionibacterium acnes HL027PA2] gi|315087107|gb|EFT59083.1| peptide deformylase [Propionibacterium acnes HL002PA3] gi|315089281|gb|EFT61257.1| peptide deformylase [Propionibacterium acnes HL072PA1] gi|315095304|gb|EFT67280.1| peptide deformylase [Propionibacterium acnes HL038PA1] gi|315099184|gb|EFT71160.1| peptide deformylase [Propionibacterium acnes HL059PA2] gi|315100332|gb|EFT72308.1| peptide deformylase [Propionibacterium acnes HL046PA1] gi|315106855|gb|EFT78831.1| peptide deformylase [Propionibacterium acnes HL030PA1] gi|315108984|gb|EFT80960.1| peptide deformylase [Propionibacterium acnes HL030PA2] gi|327328434|gb|EGE70196.1| peptide deformylase [Propionibacterium acnes HL096PA2] gi|327329700|gb|EGE71456.1| peptide deformylase [Propionibacterium acnes HL096PA3] gi|327334216|gb|EGE75930.1| peptide deformylase [Propionibacterium acnes HL097PA1] gi|327444220|gb|EGE90874.1| peptide deformylase [Propionibacterium acnes HL043PA2] gi|327444900|gb|EGE91554.1| peptide deformylase [Propionibacterium acnes HL043PA1] gi|327446386|gb|EGE93040.1| peptide deformylase [Propionibacterium acnes HL013PA2] gi|327452026|gb|EGE98680.1| peptide deformylase [Propionibacterium acnes HL092PA1] gi|327454936|gb|EGF01591.1| peptide deformylase [Propionibacterium acnes HL087PA3] gi|327457777|gb|EGF04432.1| peptide deformylase [Propionibacterium acnes HL083PA2] gi|328752375|gb|EGF65991.1| peptide deformylase [Propionibacterium acnes HL020PA1] gi|328755230|gb|EGF68846.1| peptide deformylase [Propionibacterium acnes HL087PA1] gi|328758290|gb|EGF71906.1| peptide deformylase [Propionibacterium acnes HL025PA2] gi|328760021|gb|EGF73603.1| peptide deformylase [Propionibacterium acnes HL099PA1] Length = 200 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 20 SLRRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 80 ACPDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NGI+F D LS+ R + ++ Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182 >gi|297181739|gb|ADI17920.1| N-formylmethionyl-tRNA deformylase [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 174 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M ++++PD L +VSRP+++ + DI + ++ E S +G+AA Q+G R++ Sbjct: 1 MAVLDILVYPDKRLTQVSRPVDEFSRDIKTFVKDLEETFRSYPGCVGIAAPQVGRFERII 60 Query: 60 VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++D+ N + IT + S+ +EGCLS+PDY V+R+ I + ++ N Sbjct: 61 LVDVSQKPQHVNHGFLVLINPKITSYEGNSLGREGCLSVPDYTGKVERAKSIALEALNEN 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + G A +QHE+DHL+G LFID L +R+ + K++ Sbjct: 121 GDKQELKLSGYEARAVQHEIDHLDGKLFIDRLVG-RRNSLNKRIE 164 >gi|271968555|ref|YP_003342751.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270511730|gb|ACZ90008.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 162 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 1/158 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+LR + P+ + D+ LID M + MY+ G+GLA QIGV R+ V D Sbjct: 1 MRDIRVVGDPVLRTPAEPVVDFDRDLRRLIDEMFDAMYAAQGVGLAGPQIGVSKRVFVYD 60 Query: 63 L-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 H NP++ ++ ++ + G + A R+A +TVR +D + Sbjct: 61 CSSRKGHLINPVLTVDDDAEILDEEGCLSVPGRDTGTPIYARTPRAAGVTVRGLDRLGRP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I A GLLA C QHE DHL G+L++D L++ + Sbjct: 121 VQIRARGLLARCFQHETDHLEGMLYVDRLAKDAARKVL 158 >gi|308535392|ref|YP_002140756.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] gi|308052737|gb|ACH40960.2| polypeptide formylmethionine deformylase [Geobacter bemidjiensis Bem] Length = 184 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 96/168 (57%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59 M + +V +P+ IL+ + +E+I+ + L+D++++ M++ G A QIGV R+ Sbjct: 17 MAVRNIVTYPNQILKTPCQVVEQIDDWVRQLVDDLVDTMHAGPGSVGVASPQIGVSLRVC 76 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VID+ + H K+ + I +V +EGC+S+PDY DV+RS +T+R+ + Sbjct: 77 VIDVSKNRHGKDNNHGLLLMINPEILARSGAAVMREGCMSVPDYTGDVERSTELTLRFTE 136 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A G A +QHELDHL+G+LF+D ++ LK + +K K Sbjct: 137 PDGTVREFEASGFEAVAIQHELDHLDGLLFLDRIASLKTGLFRRKSYK 184 >gi|257056762|ref|YP_003134594.1| peptide deformylase [Saccharomonospora viridis DSM 43017] gi|256586634|gb|ACU97767.1| peptide deformylase [Saccharomonospora viridis DSM 43017] Length = 166 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + L F DP+L+ + P+ + I L+D++L+ + GLAA QIGV R Sbjct: 1 MVMRDLRYFGDPVLKSPADPVTTFDDSIRALVDDLLDTVNLPGRAGLAAPQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S++ EGCLS+P R+ TV+ +D + Sbjct: 61 YNVDGSIG-----YVLNPELVELSEEKHEVMEGCLSLPGLSFTTVRAQRATVKGVDLRNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GLLA CLQHE+DHL+G+L+ID L +R ++ Sbjct: 116 PVTVSGSGLLAQCLQHEVDHLDGLLYIDRLEPQQRKQALREAR 158 >gi|262341227|ref|YP_003284082.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272564|gb|ACY40472.1| peptide deformylase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 171 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P+VI+ +PILR+ I+ + +I LI +M E ++ GIGLAA QIG RL Sbjct: 1 MVLPIVIYGNPILRKKCLDIDLCSCKKEINQLIKDMFETIHQAKGIGLAAPQIGKNIRLF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ + K VFIN KI+ + EGCLSIP VKR + + + Y D N Sbjct: 61 IVET-PYLDGKYKEVFINAKILKIHGKEYKFNEGCLSIPGIMGYVKRKSNVLIEYYDHNW 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + Q G+ A + HE DHL+G LFID+ S ++ I KK+ Sbjct: 120 KKQKKTLTGICARVILHEYDHLDGKLFIDYFSSTRKKRIEKKL 162 >gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens] Length = 202 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 10/177 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++++PDP LR ++ I+ + + L++ ML+VMY TDG+GLAA Q+GV RL+V + Sbjct: 11 LEVILYPDPRLRAKNKFIKVFDDKLQQLVNEMLDVMYKTDGVGLAAPQVGVNVRLMVYNP 70 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP----------DYRADVKRSAFITVR 113 V +NP+I+ + ++ EGCLS P A+V+R + + Sbjct: 71 SGERGSGKEYVLVNPRIVKYGKSRDLFDEGCLSFPVLERGPNQSLTIEAEVERPKSVRID 130 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D + I A QHE DHL GIL+ D ++ D I ++ KL +L + Sbjct: 131 AQDIKGKKFSINLKDFQARIFQHEYDHLEGILYFDRMTPEVLDTIRPELEKLEKLYE 187 >gi|91784124|ref|YP_559330.1| peptide deformylase [Burkholderia xenovorans LB400] gi|296158911|ref|ZP_06841739.1| peptide deformylase [Burkholderia sp. Ch1-1] gi|91688078|gb|ABE31278.1| Formylmethionine deformylase [Burkholderia xenovorans LB400] gi|295890786|gb|EFG70576.1| peptide deformylase [Burkholderia sp. Ch1-1] Length = 177 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160 >gi|329890845|ref|ZP_08269188.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] gi|328846146|gb|EGF95710.1| peptide deformylase [Brevundimonas diminuta ATCC 11568] Length = 190 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 20/188 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M + ++ + IL+ V+ P+E + + L+D+MLE MY GIGLAA QIG L Sbjct: 1 MAIRRILTIDNAADLAILKTVAAPVEGGVTDAVRALMDDMLETMYDAPGIGLAAPQIGEL 60 Query: 56 YRLVVIDLQDHA---------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 R+VV+DL D R+NP F+NP+I+ S++ Y+EGCLS+P Y Sbjct: 61 TRVVVMDLGDKPVEGASDEPQTEEEALERRNPRFFVNPEILWSSEEMFSYEEGCLSVPTY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V+R A + VRYM+ + +GL A C QHELDHLNG+LFIDHLSRL+RD Sbjct: 121 YDSVERPARVRVRYMNYQGETIEEEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRAVS 180 Query: 161 KMSKLVQL 168 K+ K ++ Sbjct: 181 KVKKHARM 188 >gi|294790924|ref|ZP_06756082.1| peptide deformylase [Scardovia inopinata F0304] gi|294458821|gb|EFG27174.1| peptide deformylase [Scardovia inopinata F0304] Length = 162 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + PDPILR V PI I I +L+ ++ + + GL+A QIGV R Sbjct: 1 MSIREIRCVPDPILRTVCDPITTITPAIRSLVRDLTDTVDDPGRAGLSANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + EGCLS+P +R+ + V +D N Sbjct: 61 FNIEGKVDYIL------NPRLVKTSGEQYGDEGCLSVPGLWYKTRRADYARVEGIDLNGH 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +++ GL+ LQHE DHL+G +++D L + +R + M + Sbjct: 115 KKVLEGHGLMGRMLQHECDHLDGHVYLDRLEKEERRAALRYMRSRQKN 162 >gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424] gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424] Length = 187 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 58/147 (39%), Positives = 88/147 (59%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ I K++ + L ML+ MYS++GIGLAA Q+ V +L+VID Sbjct: 17 LEIHYLGDRVLRQPAKRIAKVDESVRQLAKEMLQTMYSSNGIGLAAPQVAVNKQLLVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP+I S + ++EGCLSIP DV R I V Y D + + + Sbjct: 77 EPDNPANPPLILINPQITQSSQELCQFEEGCLSIPGVYLDVVRPKVIEVSYKDESGRPKK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 + A LLA +QHE+DHLNGI+F+D + Sbjct: 137 LKATDLLARVIQHEMDHLNGIMFVDRV 163 >gi|304382925|ref|ZP_07365407.1| peptide deformylase [Prevotella marshii DSM 16973] gi|304335950|gb|EFM02198.1| peptide deformylase [Prevotella marshii DSM 16973] Length = 186 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V++ I D+ LI NM E M S+DGIGLAA QIG R+VVI Sbjct: 1 MILPIYVYGQPVLRKVAQDISSDYPDLQELIANMFETMDSSDGIGLAAPQIGKSIRVVVI 60 Query: 62 D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D ++ + + + I + + + +EGCLSIP V R + I V Y Sbjct: 61 DLNVLSDDFPEYKDFRKAYINPHILEIDETSEKRLMEEGCLSIPGLHEKVPRFSRIHVTY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + +G LA +QHE DHL G +F+DH+S L++ +I K+ L Q R Sbjct: 121 LDEAFVSHDEWVEGYLARVMQHEFDHLEGKMFVDHISPLRKQLIKNKLKALTQGR 175 >gi|258593594|emb|CBE69935.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [NC10 bacterium 'Dutch sediment'] Length = 176 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 8/175 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + P+LR+V+ P+ ++I LID+M+E M +G+G+AA Q+ V + Sbjct: 1 MAILKVARLGHPVLRQVAPPVRPETIREAEIQRLIDDMIETMREYEGVGIAAPQVHVSKQ 60 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + VI A V IN ++ + + EGCLS+ D+R R + Sbjct: 61 IAVIESKGNTRYPDAPEIPLTVLINLEVTPLAPELEDDWEGCLSLIDFRGQTPRYQQVRA 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +D + A G A LQHE DHL G LFID + L+ + S+ + Sbjct: 121 KALDREGRSFEFVATGFHARVLQHERDHLLGKLFIDRMKSLETLSYLPEYSRYWK 175 >gi|312793226|ref|YP_004026149.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876962|ref|ZP_07736937.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|311796277|gb|EFR12631.1| peptide deformylase [Caldicellulosiruptor lactoaceticus 6A] gi|312180366|gb|ADQ40536.1| peptide deformylase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 166 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + + EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGAIELVNPEIEHSEGSAVDV------EGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168 + A+GLLA + HE+DHL+GILF+D + R + I ++ SK ++ Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRFVSEEEIEQRRSKGEKM 163 >gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941] Length = 164 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + F DP+L+ + P++ + + L + M E M +G+GLAA Q+G L R+ V Sbjct: 1 MALEMRTFGDPVLKSRAAPVKTFDGALARLAEEMFETMREHEGVGLAANQVGRLKRIFVA 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +++D +NP I S+ +EGCLSIP R +V+R A + + + + Sbjct: 61 EVEDRRLV-----VVNPAIEEASERTERAEEGCLSIPGVRVEVERPAAVVLTGQNLDGSP 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM-SKLVQLR 169 I A+GLLA LQHE DHL+G+L +D + R R +++ ++++ R Sbjct: 116 LRIEAEGLLARVLQHETDHLDGVLILDRVDRETRRAALRELRERMLKSR 164 >gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus mobilis] Length = 166 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DP+LR ++ + K N+++ L+D+M + M + G+GLAA QIG+ R+VV Sbjct: 15 MAVYEIVKIGDPVLREKAKTVTKFNANLGRLMDDMYDTMVAAKGVGLAAPQIGISKRVVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + + EGCLSIPD++ +V RS + V+ + N + Sbjct: 75 IDVGDGRIELVNPEILEA------EGSQIDVEGCLSIPDFQEEVNRSQRVKVKAQNRNGE 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +I G LA LQHE+DHL G+LF+D L + Sbjct: 129 EYVIEGTGFLARALQHEIDHLEGVLFVDLLDK 160 >gi|307155367|ref|YP_003890751.1| peptide deformylase [Cyanothece sp. PCC 7822] gi|306985595|gb|ADN17476.1| peptide deformylase [Cyanothece sp. PCC 7822] Length = 175 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + +PILR+ ++P+E I I LID+++ S +G+G+AA Q+ YR+ Sbjct: 1 MAEQLEIAQLGNPILRQNAQPVEDITDTAIQQLIDSLIATAASANGVGIAAPQVSQSYRV 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ +A P INPKII +S + EGCLS+P R V R ITV Sbjct: 61 FIVASRPSPRYPNAPEMVPTAMINPKIIAYSAERVKGWEGCLSVPGVRGLVPRYQAITVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 Y+D Q +A QHELDHL+G++F+D L + ++ K++ Sbjct: 121 YLDRQGNLQRQEFTDFVARIFQHELDHLDGMVFVDRLESTRDLYTEQEYQKIISQ 175 >gi|183220960|ref|YP_001838956.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911055|ref|YP_001962610.1| peptide deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687791|sp|B0SHH1|DEF_LEPBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687819|sp|B0SQM2|DEF_LEPBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167775731|gb|ABZ94032.1| N-formylmethionyl-tRNA deformylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779382|gb|ABZ97680.1| Peptide deformylase (PDF; Polypeptide deformylase) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 179 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ +PILR+ S + + D LI +M E M DG+GLAA QIGVL + Sbjct: 1 MAVRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKK 60 Query: 58 LVVIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 LVV+ +D R + +NP+I S + EGCLS+P R V+R I Sbjct: 61 LVVVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +++ D N +G A LQHE DHL G+L++D L K Sbjct: 121 MKWRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRLKSTK 163 >gi|187924438|ref|YP_001896080.1| peptide deformylase [Burkholderia phytofirmans PsJN] gi|187715632|gb|ACD16856.1| peptide deformylase [Burkholderia phytofirmans PsJN] Length = 177 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160 >gi|260424655|ref|ZP_05732837.2| peptide deformylase [Dialister invisus DSM 15470] gi|260402717|gb|EEW96264.1| peptide deformylase [Dialister invisus DSM 15470] Length = 161 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 4/151 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ DPIL+ V+ P+ + + L++ M + MY ++G+GLAA QI V R+ V D Sbjct: 10 KIITAGDPILKSVAMPVTAFDKKLKFLVNEMKKTMYESNGVGLAAPQIAVSKRVFVADDG 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P D EGCLS+P++ +V+R A +TV+Y D + + + Sbjct: 70 ESGFEAYINPRWTPDGDEKVTDT----EGCLSVPNWYGEVERYANVTVKYQDIHGKRKQK 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLLA C+QHE DHLNGILFI+ + L + Sbjct: 126 KATGLLARCIQHETDHLNGILFIEKANSLHK 156 >gi|56698050|ref|YP_168421.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679787|gb|AAV96453.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L P+E I D +LI +M + MY+ G GLAA Q+GV+ R V Sbjct: 1 MSVLPILTWPDARLSWRCDPVEGIVPD--DLIRDMFDTMYAAKGRGLAAPQVGVMQRFFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ +PM INP I+ +E CLSIP V R +TV++ Sbjct: 59 MDVGWKEGPPSPMAMINPVIMAAERVPVEMEEVCLSIPGLSVPVTRPKAVTVQWTAPEGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + DG A C+QHE DHLNG++ +DHL R Sbjct: 119 IHMADFDGFEARCIQHEFDHLNGVVTLDHLDPRAR 153 >gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor] Length = 264 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 87/167 (52%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I ++++ L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 73 LEVVKYPDPILRARNKRINAFDANLRALADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 132 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + + V++EGCLS P +V R + + D Sbjct: 133 AGVKGEGEEIVLVNPVVYKSAKRLLVFEEGCLSFPGIYGNVLRPESVKIEAQDVTGAKIK 192 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D ++ + + +++ L + + Sbjct: 193 VKLSGLPARVFQHEFDHLLGILFFDRMTMDVLETVREELKNLEKKYE 239 >gi|167570376|ref|ZP_02363250.1| peptide deformylase [Burkholderia oklahomensis C6786] Length = 177 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L V+RP+E N ++ L+ +M E M+ +G GLAA Q+GV ++++ Sbjct: 1 MIREILKMGDQRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQLGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP + D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPTVEYLPPDMEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQFGEKLERVAEGFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|150016029|ref|YP_001308283.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149902494|gb|ABR33327.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 152 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 9/161 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R ++KI+ ++ LI++M E MY DG+GLAA Q+G+L RL V Sbjct: 1 MALRNIRKYGDDVLRKKCREVDKIDDRLLTLIEDMKETMYDADGVGLAAPQVGILKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D I + +EGCLS+P +V R ++ R ++ + Sbjct: 61 VDIGDGPLVFINPEIIET------SGSQIDEEGCLSLPGETEEVMRPNYVRARALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 I A+ LLA + HE DHLNG LFID + K +KK Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRV---KGRGASKK 152 >gi|325292946|ref|YP_004278810.1| polypeptide deformylase [Agrobacterium sp. H13-3] gi|325060799|gb|ADY64490.1| polypeptide deformylase [Agrobacterium sp. H13-3] Length = 164 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L + P+ + + NL+ ++++ M + G+G+ A IGV R+ V Sbjct: 1 MAIRPILSYPHAGLSEICAPVTVFDDHLQNLVTDLIDTMRAAPGVGITAAHIGVKQRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L INP+I++ S + EG +S+P + +V+R + + VR+ D Sbjct: 61 LELTPGTVLTY----INPEIVSHSAQTMRHVEGSVSMPGFTEEVERPSEVEVRFQDVAGV 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A A C+QHE+D L+G+ ++ LS+LKRD + KK K + Sbjct: 117 EHRESAKAFHAICIQHEIDQLDGVFWLKRLSKLKRDRLVKKWEKSRK 163 >gi|253575776|ref|ZP_04853111.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844819|gb|EES72832.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 160 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V PD +L +V++ ++KI +I L+ +M + MY +G+GLAA QIG+L R++V Sbjct: 1 MAIRIIVKEPDEVLHQVAKEVKKITPNIQKLLTDMADTMYDAEGVGLAAPQIGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + + I + EGCLSIP YR DV+R+ +TV+ +D N Sbjct: 61 VDVGDEHGL----IELINPEIVSKEGEQFGPEGCLSIPGYRGDVRRAMTVTVKGLDRNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 LLA QHE+DHLNG+L+ D Sbjct: 117 EVTYTGSELLARAFQHEIDHLNGVLYTD 144 >gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916] gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916] Length = 201 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 89/149 (59%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ +R I K++ + L +ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 31 LDIHKLGDEVLRQEARRISKVDESVRELARDMLRSMYTAKGIGLAAPQVGVHKQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I T S Y+EGCLSIP DV R I + Y D + + Sbjct: 91 DLETPSSPPLVLINPEITTASATVDTYEEGCLSIPGVYLDVVRPTAIQLSYRDEMGRPKT 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 151 MKADGLMARCIQHEMDHLKGVLFVDRVTD 179 >gi|313683649|ref|YP_004061387.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] gi|313156509|gb|ADR35187.1| peptide deformylase [Sulfuricurvum kujiense DSM 16994] Length = 171 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 94/170 (55%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +P+ L+ S+ + + + +D+M E M +++GIGLAA+Q+ R++++ Sbjct: 1 MLLPIITYPNKQLKARSQTVVNFDELLHRFLDDMYETMIASNGIGLAAIQVANPIRVLIL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + D ++ + + +YQEGCLS+P + DV+R ++++Y + + Sbjct: 61 CIPDEEGNQHKENLLEIINPVIHNPKGNVLYQEGCLSVPGFYEDVERYETLSLKYQNRHG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++A LLA +QHE+DHL G LFI+ L+ +R K+ K + + Sbjct: 121 EACELHASDLLAIAIQHEIDHLEGKLFIEKLTYNRRKKFEKEYKKAQKEK 170 >gi|269792636|ref|YP_003317540.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100271|gb|ACZ19258.1| peptide deformylase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 168 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 6/167 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +FPDP+LR+ + ++ +L+ +M MY+ DG+GLAA Q+G+ L VID Sbjct: 8 VLKVRVFPDPVLRQPVEEVRDFGEELSDLLADMWATMYAKDGVGLAAPQVGISKSLAVID 67 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + ++ D +EGCLS P +VKR + I +R+ D + Sbjct: 68 HHGDRYVVVNPQILS------QDGEEEGEEGCLSFPGIFVNVKRPSRIRLRFQDETGAVK 121 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G +A HE+DHL G L IDH+S ++R MI +++K + R Sbjct: 122 EMELQGFIARVFLHEIDHLRGRLLIDHVSPIRRQMIKTRLAKRSEDR 168 >gi|308069676|ref|YP_003871281.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305858955|gb|ADM70743.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 165 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V Sbjct: 1 MSIRIIVLEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + I + + EGCLSIP DV+R+ +TV+ +D + Sbjct: 61 VDAGDEHGLIK----MINPEIVAEEGEELGPEGCLSIPGLNGDVRRAEKVTVKGLDREGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + A GLL+ QHE+DHLNGILF D Sbjct: 117 AITVTATGLLSRAFQHEIDHLNGILFTD 144 >gi|163733889|ref|ZP_02141331.1| peptide deformylase, putative [Roseobacter litoralis Och 149] gi|161393000|gb|EDQ17327.1| peptide deformylase, putative [Roseobacter litoralis Och 149] Length = 165 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 60/165 (36%), Positives = 97/165 (58%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I D++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRAYLQWPDARLRTAAADVPEITPDVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R+ NP+II S + ++E ++P A V+R +TVR+MD Sbjct: 61 VDASDSRDRRI--RLANPEIIEASAIMNDHEEASPNLPGVFAKVRRPRGVTVRFMDETGT 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 119 YVRRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|314914712|gb|EFS78543.1| peptide deformylase [Propionibacterium acnes HL005PA4] Length = 200 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L +RP+ + + D+ LI +M M + DG+GLAA Q+GV L V Sbjct: 20 SLRRVTRWGESVLHAQTRPVTEFDEDLTTLIRDMFATMNAADGVGLAATQVGVDLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 80 ACPDANNIVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NGI+F D LS+ R + ++ Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182 >gi|323526493|ref|YP_004228646.1| peptide deformylase [Burkholderia sp. CCGE1001] gi|323383495|gb|ADX55586.1| peptide deformylase [Burkholderia sp. CCGE1001] Length = 177 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L R++ P++ + ++ LI +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIRGILKMGDPRLLRIADPVDHFDTPELHELIKDMFETMHDANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSLDMEEGWEGCLSVPGLRGAVSRFSMIKYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160 >gi|91788452|ref|YP_549404.1| peptide deformylase [Polaromonas sp. JS666] gi|91697677|gb|ABE44506.1| Peptide deformylase [Polaromonas sp. JS666] Length = 179 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + + L+ +M + M + DG GLAA QIGV ++V Sbjct: 1 MTVREILKMGDPRLFRVAQPVAAFDTDALHLLVSDMFDTMRAADGAGLAAPQIGVNLQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I S D EGCLS+P R V R + I Sbjct: 61 IFGADQVNPRYPDAPLVPRTVLLNPVITPLSADEEEGWEGCLSVPGLRGLVPRFSHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DHL G L+ + Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLMGKLYPMRIRDF 160 >gi|282854675|ref|ZP_06264010.1| peptide deformylase [Propionibacterium acnes J139] gi|282582257|gb|EFB87639.1| peptide deformylase [Propionibacterium acnes J139] gi|314966213|gb|EFT10312.1| peptide deformylase [Propionibacterium acnes HL082PA2] gi|314981979|gb|EFT26072.1| peptide deformylase [Propionibacterium acnes HL110PA3] gi|315090890|gb|EFT62866.1| peptide deformylase [Propionibacterium acnes HL110PA4] gi|315095103|gb|EFT67079.1| peptide deformylase [Propionibacterium acnes HL060PA1] gi|315104332|gb|EFT76308.1| peptide deformylase [Propionibacterium acnes HL050PA2] gi|327328118|gb|EGE69887.1| peptide deformylase [Propionibacterium acnes HL103PA1] Length = 200 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L +RP+ + + D+ L+ +M M + DG+GLAA Q+GV L V Sbjct: 20 SLRRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNAADGVGLAATQVGVDLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 80 ICPDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NGI+F D LS+ R + ++ Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182 >gi|254302996|ref|ZP_04970354.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323188|gb|EDK88438.1| formylmethionine deformylase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 174 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVEINEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP I+ +++ ++EGCLS+P V+R + ++Y++ Sbjct: 61 VC----DDGNGVVRKVINPIIVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNEYG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILF++ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFVEKISPMAKRLIAKKLANMKKE 165 >gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120] gi|23396564|sp|Q8YSK6|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 187 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 90/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ + LI +ML+ MYS+DGIGLAA Q+G+ +L+VID Sbjct: 17 LQLHYLGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSSDGIGLAAPQVGINKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP I S + QEGCLSIP DVKR + V Y D N + Q Sbjct: 77 EPDNPANPPLILINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL C+QHE+DHLNG++F+D + Sbjct: 137 LKATDLLGRCIQHEMDHLNGVVFVDRVD 164 >gi|297162299|gb|ADI12011.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 185 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 72/146 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + DP+L + ++ + L+++M MY+ G+GLAA Q+GV R+ V D Sbjct: 13 VRPMRLLGDPVLATSCEEVTAFDAALGRLVEDMYATMYAAQGVGLAANQVGVALRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDEDRRHLGHVVNPRLVEADGVTVRGPEGCLSLPGIEAGTVRHDHAVVEGVTATGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 + G A CLQHE DHL+G LF D Sbjct: 133 RVEGTGFFARCLQHECDHLDGRLFTD 158 >gi|78044307|ref|YP_360316.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] gi|123743168|sp|Q3AC18|DEF_CARHZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|77996422|gb|ABB15321.1| peptide deformylase [Carboxydothermus hydrogenoformans Z-2901] Length = 152 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 6/156 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V DPIL+ +++PI++I +I+ L++NM + MY+ +G+GLAA QIGV R +V Sbjct: 1 MAVYKVVEIGDPILKEIAKPIKEITPNIIKLLENMADTMYAYNGVGLAAPQIGVSKRAIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + I EGCLS+P + +V R+ +TV+ ++ + Sbjct: 61 VDVGEGLIELINPEIIEVSGEEKDI------EGCLSVPGVQGEVVRAKKVTVKGLNRYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 +I A+GLLA QHE+DHLNGILF++ + R Sbjct: 115 EIVIPAEGLLARAFQHEIDHLNGILFVEKADNIVRK 150 >gi|309811979|ref|ZP_07705745.1| peptide deformylase [Dermacoccus sp. Ellin185] gi|308434037|gb|EFP57903.1| peptide deformylase [Dermacoccus sp. Ellin185] Length = 191 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L ++ +++I D L+++M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAVRPITIVGHKALHAPTKRVKEITDDTRALVEDMFETMEAANGVGLAANQVGVKQRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF------SDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D D N + + D EGCLS+P R+ + V Sbjct: 61 FDCPDDELGDNRRGVVINPKLEKGRVPAGEADEENDNEGCLSVPGEHFPTARADWAKVTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +I G A LQHE DHL+G L++D L+ R Sbjct: 121 TDLDGNEIVIEGHGFFARMLQHETDHLDGYLYLDRLTPTMR 161 >gi|238026898|ref|YP_002911129.1| peptide deformylase [Burkholderia glumae BGR1] gi|237876092|gb|ACR28425.1| Peptide deformylase [Burkholderia glumae BGR1] Length = 177 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E + + L+ +M E M+ +G GLAA QIGV +L++ Sbjct: 1 MIREILRMGDPRLLDVAKPVEAFDTPALHELVADMFETMHHANGAGLAAPQIGVGLQLII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I D EGCLS+P R V R + Sbjct: 61 FGFGNNARYPDAPAVPETVLINPSIEYLPPDMEEGWEGCLSVPGMRGVVSRYRKVHYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+ A +QHE DHL G L+ ++ + Sbjct: 121 DQYGKRIDRIAEDFHARVVQHEYDHLIGKLYPMRITDFSK 160 >gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503] gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7] gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3] gi|158513748|sp|A6L9R8|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503] gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13] gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B] gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19] gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3] Length = 185 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 58/172 (33%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + K D+ L+ NM E MY+ DG+GLAA Q+G+ RLVVI Sbjct: 1 MILPVFLYGQPVLRKEAEDVPKDYPDLKQLVANMFETMYNADGVGLAAPQVGLSIRLVVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP+ + S++ +EGCLS+P V RS + VRY D Sbjct: 61 DGDVMGDDFPECKGFKRALINPEFLERSEEEIAMEEGCLSLPGIHEKVSRSKTVRVRYWD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 N + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 ENWEEHEEVVEGFAARIVQHECEHLTGHVFIDNVSAIRRQLNKGKLNSIIKG 172 >gi|330991623|ref|ZP_08315574.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] gi|329761642|gb|EGG78135.1| Peptide deformylase-like protein [Gluconacetobacter sp. SXCC-1] Length = 173 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ FP L++ + P++ ++ L ++LE M++ GIG+ A +G+L RLVV Sbjct: 1 MAILPIIRFPHACLQQAAAPVDATSARTTELARDLLETMHAAPGIGITACHVGMLLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D P NP+II + +EG +S+P A V R A + VRY + Sbjct: 61 I---DLPGGNGPQARANPEIIWQDTATATAEEGSVSMPGIHAPVTRPARVRVRYTGLDGL 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA CLQHE+D +NGI + LS L+RD K+ S+ +L Sbjct: 118 MVEEEAEGLLAACLQHEIDQINGIFWTRRLSPLRRDRAMKRYSRQTRL 165 >gi|289178547|gb|ADC85793.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 163 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PDP+LR PI +I + NL+ ++L+ + G++A QIGV R Sbjct: 5 AIREIRVVPDPVLRTPCDPITEITPAVRNLVQDLLDTVDDPGRAGVSANQIGVSLRAFSY 64 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ V + EGCLS+P KR+ + VR MD + Sbjct: 65 NIDGKIGYVLNPVLEETRGE------QYGDEGCLSLPKLWYKTKRADYARVRGMDLDGNE 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ DG++ LQHE DHL+G L+ID L + Sbjct: 119 IVLEGDGIMGRMLQHETDHLDGHLYIDRLEK 149 >gi|163792491|ref|ZP_02186468.1| Formylmethionine deformylase [alpha proteobacterium BAL199] gi|159182196|gb|EDP66705.1| Formylmethionine deformylase [alpha proteobacterium BAL199] Length = 183 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 11/181 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K +V DP+LR V+ + I LID+M+ + GIGLAA QIG+L R++ Sbjct: 1 MTSKSIVRVGDPVLRSVAALVPDPTAPAIRQLIDDMVASLEEAGGIGLAAPQIGILQRVL 60 Query: 60 VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + D P INP + D ++ EGCLSIP R +V R + V Sbjct: 61 IFWVPDARATNEPDDGPCPLTALINPVLEPLDDRMALGWEGCLSIPGLRGEVPRHLRMRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLR 169 + G A LQHE+DHL+GIL++D ++ R T+++ + R Sbjct: 121 TATTPEGEPFEAIVAGTRARVLQHEVDHLDGILYLDRMTDFTRFGFTEEVHEAEAERRSR 180 Query: 170 D 170 + Sbjct: 181 E 181 >gi|293603522|ref|ZP_06685943.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] gi|292817958|gb|EFF77018.1| peptide deformylase [Achromobacter piechaudii ATCC 43553] Length = 177 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + P++ DP L RV+ P+E+ + ++ LI +M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHPILKMGDPRLLRVAPPVEQFDTPELHALIADMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGQVPRYRHIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ + + Sbjct: 121 DPYGKLIEREAEGFHARVVQHECDHLIGRLYPSRIQDFSK 160 >gi|306845817|ref|ZP_07478385.1| peptide deformylase [Brucella sp. BO1] gi|306273709|gb|EFM55547.1| peptide deformylase [Brucella sp. BO1] Length = 164 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 61/167 (36%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRQLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 L---ELDRTAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413] gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413] Length = 187 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 89/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ + LI +ML+ MYS DGIGLAA Q+G+ +L+VID Sbjct: 17 LQLHYLGDRVLRQPAKRITKVDDETRQLIRDMLQTMYSNDGIGLAAPQVGINKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S + QEGCLSIP DVKR + V Y D N + Q Sbjct: 77 EPDNPANPPLVLINPTIKQVSREICSAQEGCLSIPGVYMDVKRPEVVEVAYKDENGRPQT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL C+QHE+DHLNG++F+D + Sbjct: 137 LKATDLLGRCIQHEMDHLNGVVFVDRVD 164 >gi|298246394|ref|ZP_06970200.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297553875|gb|EFH87740.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 169 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PILR+ ++ + + ++ + L+D+M E M++++G+GLAA QI + R+ V Sbjct: 1 MAMRQIITSENPILRQKAKKVHRFDASLQKLVDDMFETMHASNGVGLAAPQIALSIRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + NP+I+ + + +++R+A I V+ +D + Sbjct: 61 AEYEGRRVA-----IFNPEIVKAEGEERGQEGCLSIPGYLGNNIRRAAKIVVKGVDVKGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A+G A LQHE+DHL+GILF+D L Sbjct: 116 PVRVNAEGWFARILQHEIDHLDGILFLDRLDS 147 >gi|296141405|ref|YP_003648648.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] gi|296029539|gb|ADG80309.1| peptide deformylase [Tsukamurella paurometabola DSM 20162] Length = 198 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 11/176 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+VI DP+L + P+E + +++I+ L+D+MLE M +G+GLA Q+G Sbjct: 1 MAVLPIVIVGDPVLHTPTTPVELDADGRPDAEIVALLDDMLETMDRANGVGLAGNQVGRD 60 Query: 56 YRLVVIDLQDHAHRKNP------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 RL V D D + V +I D EGCLS+P R+ + Sbjct: 61 LRLFVYDCPDEETHERRRGEVINPVLTTSEIPETMPDPDDDWEGCLSVPGESFPTGRADW 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 V D N + I G A LQHE HL+G L+ D L K + K Sbjct: 121 AKVVGTDRNGEKVEIEGTGFFARMLQHETGHLDGFLYTDVLVGRYARQAKKFIKKQ 176 >gi|57237196|ref|YP_178208.1| peptide deformylase [Campylobacter jejuni RM1221] gi|86149710|ref|ZP_01067940.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153727|ref|ZP_01071930.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597153|ref|ZP_01100388.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|148926356|ref|ZP_01810040.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|153951420|ref|YP_001397439.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157414500|ref|YP_001481756.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205356562|ref|ZP_03223325.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|218561870|ref|YP_002343649.1| peptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|17432957|sp|Q9PIT8|DEF_CAMJE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57166000|gb|AAW34779.1| peptide deformylase [Campylobacter jejuni RM1221] gi|85839978|gb|EAQ57237.1| peptide deformylase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85842688|gb|EAQ59900.1| peptide deformylase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190214|gb|EAQ94188.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359576|emb|CAL34360.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844748|gb|EDK21853.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8486] gi|152938866|gb|ABS43607.1| peptide deformylase [Campylobacter jejuni subsp. doylei 269.97] gi|157385464|gb|ABV51779.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni 81116] gi|205345567|gb|EDZ32207.1| polypeptide deformylase [Campylobacter jejuni subsp. jejuni CG8421] gi|284925483|gb|ADC27835.1| peptide deformylase [Campylobacter jejuni subsp. jejuni IA3902] gi|307747142|gb|ADN90412.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni M1] gi|315057628|gb|ADT71957.1| Peptide deformylase [Campylobacter jejuni subsp. jejuni S3] gi|315928123|gb|EFV07441.1| peptide deformylase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930199|gb|EFV09314.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 305] Length = 175 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|283955632|ref|ZP_06373125.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] gi|283792857|gb|EFC31633.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 1336] Length = 175 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R +++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRALLV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|134102367|ref|YP_001108028.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|291009319|ref|ZP_06567292.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] gi|133914990|emb|CAM05103.1| polypeptide deformylase [Saccharopolyspora erythraea NRRL 2338] Length = 166 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+LR + P+ + + +++ ++L+ + + GLAA QIGV R Sbjct: 1 MAFREIRRFGDPVLRTPAEPVTVFDDRLRSVVADLLDTVDAPGHAGLAAPQIGVGIRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ +NP+++ S++ EGCLS+P+ D R+ VR +D + + Sbjct: 61 YNVDGEIG-----YVVNPEVVELSEEQQEGPEGCLSVPELWFDTPRARHAVVRGVDADNE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + GL+A CLQHE DHL+G++++ L+ Sbjct: 116 PVTVSGSGLMARCLQHETDHLDGMIYVQRLAP 147 >gi|254485851|ref|ZP_05099056.1| peptide deformylase [Roseobacter sp. GAI101] gi|214042720|gb|EEB83358.1| peptide deformylase [Roseobacter sp. GAI101] Length = 165 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +P+ LR + + +I DI L D+M+ M + G+GLAA QIGV+ ++ V Sbjct: 1 MTVRKIVPWPNTCLRTAAAEVPEITDDIRALWDDMIATMDAMPGVGLAAPQIGVMLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP I+ S + + E ++P A VKR +TVRY+D Sbjct: 61 VDA--SQARNKRIRLANPVILDASAILNEHDEASPNLPGVSAKVKRPRGVTVRYLDETGV 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 GL AT +QH++DHL G ++ D+LS+ +RDM+ +K K Sbjct: 119 VTRRDFVGLEATSVQHQIDHLAGKMYFDNLSKTRRDMLLRKARKFK 164 >gi|222529031|ref|YP_002572913.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] gi|254767570|sp|B9MR36|DEF_ANATD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222455878|gb|ACM60140.1| peptide deformylase [Caldicellulosiruptor bescii DSM 6725] Length = 166 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGAIELVNPEIEQVEGSAVDV------EGCLSVPNVWGEVERPQKVVVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|119357657|ref|YP_912301.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] gi|158512604|sp|A1BHK0|DEF_CHLPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119355006|gb|ABL65877.1| peptide deformylase [Chlorobium phaeobacteroides DSM 266] Length = 188 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 101/167 (60%), Gaps = 3/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D +LR ++P++ I+ +I +L+ +MLE M + GIGLAA Q+G RL+VI Sbjct: 1 MILPINIYNDEVLRATAKPLKGIDRNIRDLVASMLESMRNASGIGLAAPQVGCSIRLLVI 60 Query: 62 D--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + + P+V INP ++ ++ +EGCLS+P DV R + IT++Y D + Sbjct: 61 DLSCMEKYADEKPVVVINPHLLAVKGYNAM-EEGCLSLPGILGDVVRPSSITLKYRDEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + G++A LQHE+DHL+G LFID + + R I K++ L Sbjct: 120 EERTGEFSGMMARVLQHEIDHLDGKLFIDRMQKRDRRKIDKELHSLA 166 >gi|229493717|ref|ZP_04387501.1| peptide deformylase [Rhodococcus erythropolis SK121] gi|229319386|gb|EEN85223.1| peptide deformylase [Rhodococcus erythropolis SK121] Length = 199 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 10/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVPLRVFV 60 Query: 61 IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +I D EGCLS+P + R+ + V Sbjct: 61 YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPDEDFEGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSK 164 D + + G A LQHE HL+G L+ D L + R+ KK+ K Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL--IGRNARAAKKIIK 170 >gi|83855043|ref|ZP_00948573.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842886|gb|EAP82053.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 155 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +PD L V P+ +I LI +M + MY+ G GLAA Q+G R+ V Sbjct: 1 MSVLDIVTWPDARLTAVCAPVATRTPEIDQLIADMFDTMYAAPGRGLAAPQVGRTERIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D P+ INP+I++ SD ++ +EGCLSIP D+ R+ +T+R+ D + Sbjct: 61 FDAGWKEGTPTPVACINPQIVSLSDTRAIGEEGCLSIPGVPMDIARATEVTLRWTDADG- 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 G A +QHE DHL+GI+ D + Sbjct: 120 THERKFAGAEAVIVQHEYDHLDGIVIYDRV 149 >gi|168182587|ref|ZP_02617251.1| peptide deformylase [Clostridium botulinum Bf] gi|237795949|ref|YP_002863501.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182674255|gb|EDT86216.1| peptide deformylase [Clostridium botulinum Bf] gi|229263426|gb|ACQ54459.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 147 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ +GLLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGVLFVDKV 144 >gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264] gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264] Length = 170 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 96/163 (58%), Gaps = 5/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V++ P LR S ++ ++ ++ ++D M+E M +G+GLAA Q+ + R V+++++ Sbjct: 3 IVLYEHPTLRTKSTEVDIVDDELRKILDEMVETMRKANGVGLAANQVDIPKRFFVLEVEN 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +NP+II SD+ Y+EGCLSIP V R + I V+Y++ + I Sbjct: 63 KVKK-----IVNPEIIESSDEIIEYEEGCLSIPGIYKKVNRPSEIKVKYLNEKGEEVIEE 117 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A QHELDHL+G+LFID +S L + +I+KK+ + + Sbjct: 118 LKEMWARAFQHELDHLDGVLFIDRISVLNKRLISKKLELMKKE 160 >gi|260428274|ref|ZP_05782253.1| peptide deformylase [Citreicella sp. SE45] gi|260422766|gb|EEX16017.1| peptide deformylase [Citreicella sp. SE45] Length = 166 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PD L++ + + +++ L+ ++ E MY G GLAA Q+GVL R+ V Sbjct: 1 MSLREILLWPDERLKQPCETVADV-AEVEQLVTDLFETMYDAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+ INP+I+ S++ + EGCLSIP A V+R + + + D + Sbjct: 60 MDAGWKEGDMVPLACINPEIVEVSEETASGPEGCLSIPGVTAQVRRPVRVRMAFTDLSGT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +G A QHE DHL G++ D L + + + Sbjct: 120 RQERDFEGSEAIVAQHEYDHLEGLVHFDRLDPQEAKALKLEYEAQQ 165 >gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 157 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + + I + + EGCLS P A+VKR+ ++ VR D + Sbjct: 61 VDVGDEHGR----IELINPRIMEARGEQIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA LQHE+DHLNGILF + Sbjct: 117 PFTLKATGFLARALQHEIDHLNGILFTSKV 146 >gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL] gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL] Length = 166 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRIYEDEILRKKSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGAIELVNPQIEYSEGSVVDV------EGCLSVPNMWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA L HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARALCHEIDHLDGILFVDKVIRF 147 >gi|172057935|ref|YP_001814395.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] gi|171990456|gb|ACB61378.1| methionyl-tRNA formyltransferase [Exiguobacterium sibiricum 255-15] Length = 461 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V P+ +LR+ + + K + + +ID M + MY DG+GLAA QI R+ V+ Sbjct: 3 KVVEVPNEVLRQKCQRVTKFDKKLGKMIDRMFDTMYEYDGVGLAAPQINQPIRVAVVHTD 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P+ INP+II + + CLS+P V+R I V+ D + I Sbjct: 63 DETG---PIELINPEIIEATGSEIDDEG-CLSMPGIFGPVERFEQIVVKSQDRLGRSVKI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL 150 A+G A +QHE+DHL+G+LF D L Sbjct: 119 KANGFFARAIQHEMDHLDGVLFTDKL 144 >gi|110678659|ref|YP_681666.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] gi|109454775|gb|ABG30980.1| peptide deformylase, putative [Roseobacter denitrificans OCh 114] Length = 165 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +++ + D+M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MSVRAYLKWPDARLRTAAADVAEITPEVLGIWDDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D R+ NP+II S + ++E ++P A ++R +TVR+MD Sbjct: 61 VDASDTRDRRI--RLANPEIIEASAIMNDHEEASPNLPGVFAKIRRPRGVTVRFMDETGT 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D+LS++KRDM+ +K KL Sbjct: 119 YVQRDFVGLEATSVQHQIDHLQGKMYFDNLSKVKRDMLLRKARKL 163 >gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29611708|sp|P59493|DEF_BUCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 160 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 93/161 (57%), Gaps = 3/161 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR +++PI KI++ I N+I NM + MY +GIGLAA Q+ + +++V Sbjct: 1 MSVLKILKYPDDRLRIIAKPISKIDTKIHNIIINMFDTMYYENGIGLAATQVNIPLQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D N + + IT + QEGCLSIP+Y+A++ RS ITV ++ + Sbjct: 61 I---DKIEELNHPLVLINPKITKRSGLTSIQEGCLSIPNYQAEISRSKKITVTALNYFGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + L+ C+QHE+DHL G L ID+LS L + KK Sbjct: 118 RIKLKTSSTLSICIQHEIDHLIGKLLIDYLSNLTNLKLLKK 158 >gi|114770092|ref|ZP_01447630.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] gi|114548929|gb|EAU51812.1| Formylmethionine deformylase [alpha proteobacterium HTCC2255] Length = 169 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 2/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + +PD L I I + +M + MY+ GIGLAA QIG++ L V Sbjct: 1 MAIKKFIRYPDKRLSVKCELISSITDKDHEVWKDMFDSMYNMPGIGLAACQIGIMRSLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D P NPKI+ S + QEG ++P A++KR +TVRY+D N Sbjct: 61 VDVGDGKVE--PFEMANPKILYSSGVYIENQEGSPNLPGVWANIKRPRAVTVRYIDKNGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 GL A +QH++DHLNG +F +HLS KR M+ K KL + Sbjct: 119 QIERDFVGLWAVSVQHQIDHLNGKMFFEHLSSTKRKMLINKSQKLSKQ 166 >gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 159 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-DHAHRKNPMVFI 76 + P+ ++ + L D+MLE MY GIGLAA Q+G++ R++V+D D PMV I Sbjct: 2 ADPVATVDKTLHALADDMLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLI 61 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP++I S + ++Y EGCLSIP+ A+V+RSA + V +MD N + Q L ATC+QH Sbjct: 62 NPRVIAASSETNIYDEGCLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQH 121 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 E+DHLNG LFID+L LKR MIT+KM KL + Sbjct: 122 EIDHLNGKLFIDYLKPLKRQMITRKMQKLKRE 153 >gi|239945304|ref|ZP_04697241.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291448765|ref|ZP_06588155.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] gi|291351712|gb|EFE78616.1| peptide deformylase [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +LRR + + ++ L+D+M G GLAA QIGV ++ V Sbjct: 35 AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 94 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD---VKRSAFITVRYMDC 117 D+ D ++ +NP + + + V R VR D Sbjct: 95 WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 154 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 155 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAEAK 203 >gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 161 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 4/164 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + +LR + + +++ I L D+M+ M+ DG+GLAA QIGVL RL V ++ Sbjct: 2 KILTLGNELLRERTATVAEVDESIRRLADDMIVTMHEDDGVGLAAPQIGVLKRLFVCHVR 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P VFINP+II S + Y+EGCLSIP ADV R I V+ +D N + + Sbjct: 62 GDV----PRVFINPEIIGTSQEQVRYEEGCLSIPGIYADVLRPESIQVQAIDENGKAFKL 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+GLLA +QHE+DHL G+LFIDHL KR + K K + Sbjct: 118 AAEGLLARVIQHEMDHLKGVLFIDHLEERKRRRLLKLYEKRWRG 161 >gi|227504404|ref|ZP_03934453.1| peptide deformylase [Corynebacterium striatum ATCC 6940] gi|227199052|gb|EEI79100.1| peptide deformylase [Corynebacterium striatum ATCC 6940] Length = 162 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 + DP+L + IEK +S + L ++MLE M + G+GLAA QIG+ R+ + H Sbjct: 2 YGDPVLTSRATEIEKFDSSLEALANDMLETMDAAGGVGLAANQIGLTKRIF-VYDCSHFQ 60 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 INP D EGCLSIPD + +R + V D + A G Sbjct: 61 TGLRGAIINPVWTPLGDKTQDGPEGCLSIPDITENTERYESVVVHGRDVRGNAISMVASG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L+A C+QHE DHL+G+LF+ L+ +R + + Sbjct: 121 LMARCIQHETDHLDGVLFLQRLTPERRKEAMQVIRN 156 >gi|71281182|ref|YP_267165.1| peptide deformylase [Colwellia psychrerythraea 34H] gi|71146922|gb|AAZ27395.1| polypeptide deformylase [Colwellia psychrerythraea 34H] Length = 166 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ P+ L ++P+ + S I LID+++E MY DGIGLAA Q+G +V Sbjct: 1 MTVLTILTAPNDKLIEQAKPVSDV-SQIQMLIDDLIETMYDTEDGIGLAATQVGRSEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D+ + +IT + + QEGCLSIP Y ADV+R +TV +D N Sbjct: 60 VIDISDNRDELL---VLVNPVITHGEATAKGQEGCLSIPGYYADVERFTHVTVEALDRNG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I +D LA +QHE+DHL G LFID+LS LK+ M KK+ K ++ Sbjct: 117 KELTITSDEFLAIVMQHEIDHLKGKLFIDYLSPLKQQMALKKVKKTIKN 165 >gi|300813955|ref|ZP_07094254.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511929|gb|EFK39130.1| peptide deformylase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 166 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D ++ + +IT + V +EGCLSIP + DVKR+ I V Y + + Sbjct: 61 VDDRDEENQHRFYLINP--VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I + LA +QHE+DHL+GIL+ D ++ R Sbjct: 119 EEKINCEDFLARIIQHEIDHLDGILYTDRAEKMYR 153 >gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis HTCC2601] gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601] Length = 165 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PDP L++ + + + L+ +MLE MY G GLAA Q+GVL R+ V Sbjct: 1 MALREILLWPDPKLKQPCAEVGDP-AAVSELVTDMLETMYDAPGRGLAAPQVGVLKRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V I+P+I+ SD+ + EGCLSIP A+V+R ++ + Y D N Sbjct: 60 MDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGCLSIPGVTANVRRPVWVRMAYTDLNGD 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q +G A QHE DHL+G++ D L Sbjct: 120 RQERRFEGAEAIVAQHEYDHLDGLVHFDRLDP 151 >gi|167623826|ref|YP_001674120.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] gi|167353848|gb|ABZ76461.1| peptide deformylase [Shewanella halifaxensis HAW-EB4] Length = 163 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R + P+ I + ID+++E MY DGIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R PMV INP+ + ++ +EGCLSIP YRA V R + V +D + Sbjct: 60 VIDLSDE--RDQPMVLINPEFLESRGEYQG-EEGCLSIPGYRAKVNRHQGVKVTALDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKKYK 163 >gi|226304981|ref|YP_002764939.1| peptide deformylase [Rhodococcus erythropolis PR4] gi|226184096|dbj|BAH32200.1| peptide deformylase [Rhodococcus erythropolis PR4] Length = 199 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 10/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + P+ + ++I LI +M E M + +G+GLAA Q+GV R+ V Sbjct: 1 MAILPIRIVGDPVLHKATEPVTQSPAEIAELIADMYETMDAANGVGLAANQVGVSLRVFV 60 Query: 61 IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 D +I D EGCLS+P + R+ + V Sbjct: 61 YDCPGDDRSSERRRGVVVNPVLETSEIPQTMPDPEEDFEGCLSVPGEQFPTGRADWAKVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSK 164 D + + G A LQHE HL+G L+ D L + R+ KK+ K Sbjct: 121 GTDADGNPIEVEGTGFFARMLQHETGHLDGFLYTDVL--IGRNARAAKKIIK 170 >gi|84496887|ref|ZP_00995741.1| peptide deformylase [Janibacter sp. HTCC2649] gi|84383655|gb|EAP99536.1| peptide deformylase [Janibacter sp. HTCC2649] Length = 217 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I +P+L R + +E I+ I L+ +M E M + G+GLAA Q+GV R+ Sbjct: 1 MTIRPITITGEPVLHRRAESVEVIDDGIRELVADMFETMDAARGVGLAAPQVGVGLRIFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITF-----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + +H V INP + + EGCLS+P ++R T+ + Sbjct: 61 WQMDNHDGIPPRGVVINPFVTASKPVAGDPVPADESEGCLSVPGESFPLRRGETATLTGL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 D + A G A QHE DHLNG L++D L Sbjct: 121 DLDGNDVSYAATGWFARMFQHEYDHLNGFLYVDRL 155 >gi|257095171|ref|YP_003168812.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047695|gb|ACV36883.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 177 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ DP L R + P+E+ + LI +M E M DG GLAA QIGV RLV+ Sbjct: 1 MIRPVLRMGDPRLARKAAPVEQFATPALHALIADMEETMRHLDGAGLAAPQIGVGLRLVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + S EGCLS+P R V R + + Sbjct: 61 FGVDRNPRYPEAEPVPRTVLINPVLFPLSSATEEAWEGCLSVPGLRGWVPRWSRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + G A +QHE DHL+GIL+ + + R +++ Sbjct: 121 DARGRPIDRSVAGFHARVVQHECDHLDGILYPMRIRDMSRFGFVEEL 167 >gi|313681059|ref|YP_004058798.1| peptide deformylase [Oceanithermus profundus DSM 14977] gi|313153774|gb|ADR37625.1| peptide deformylase [Oceanithermus profundus DSM 14977] Length = 199 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ ++ DP+LR+ +RP++ + + L +NM+E M+ G+GLAA Q+G+ RL Sbjct: 1 MAEVLPIRLYGDPVLRKKARPVQDFSD-LEELAENMVETMFEYGGVGLAAPQVGLSRRLF 59 Query: 60 VIDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 V + + +N V +NP+I + Y DV Sbjct: 60 VAAEYALEEEEAEADEEERPKSALRNLYVMVNPRITHREGTQVGTEGCLSIPGVYSDDVP 119 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK----K 161 R I V Y D + + A+G LA +QHELDHL G+LF+D + R + + Sbjct: 120 RDLQIRVEYQDVTGAPRTLEAEGYLARVIQHELDHLEGVLFLDRIPAELRRAFLEEHRAE 179 Query: 162 MSKLVQ 167 ++++ + Sbjct: 180 LAEMQR 185 >gi|296115525|ref|ZP_06834155.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295977920|gb|EFG84668.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 305 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V+FPD LR V+ P+ + + + ++L+ + + GIG+ A IGVL R+VV+ Sbjct: 142 PIVLFPDQRLRMVAEPVVVFDETLRAMTADLLDTVRAAPGIGITAPHIGVLQRVVVL--- 198 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P +INP+I+ SD+ + ++EG +S+P V+R A + VRY D + + Sbjct: 199 DLPGGLGPQTYINPEIVWRSDETARHEEGSISMPGVTEVVERPARVRVRYRDVDGHEMME 258 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ADGL A C QHE+D L G+ + LS L+R + + K+ + Sbjct: 259 DADGLRAVCHQHEIDQLEGVFWTQRLSTLRRSRLMSRYEKIKK 301 >gi|319763298|ref|YP_004127235.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|330825493|ref|YP_004388796.1| peptide deformylase [Alicycliphilus denitrificans K601] gi|317117859|gb|ADV00348.1| peptide deformylase [Alicycliphilus denitrificans BC] gi|329310865|gb|AEB85280.1| peptide deformylase [Alicycliphilus denitrificans K601] Length = 179 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ ++ DP L RV+RP+ + + ++ L+ ++L+ M++ +G GLAA QIGV ++V Sbjct: 1 MTQRTILKMGDPRLLRVARPVTRFDTDELHGLLADLLDTMHAANGAGLAAPQIGVDLQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A V INP + D+ S+ EGCLS+P R V R + Sbjct: 61 VFGSGAPNPRYPDAPVVPRTVLINPVVTPIGDEESLDWEGCLSVPGMRGMVPRWQTVRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + G A +QHE DHL G L+ + Sbjct: 121 GFDVRGEPIDRTVSGFHARVVQHECDHLWGKLYPMRMRDF 160 >gi|239991763|ref|ZP_04712427.1| peptide deformylase [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + +LRR + + ++ L+D+M G GLAA QIGV ++ V Sbjct: 22 AVHRITVVGEDVLRRRCQEVTAFGTPELSRLVDDMFATNRVARGAGLAANQIGVDLQVFV 81 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD---VKRSAFITVRYMDC 117 D+ D ++ +NP + + + V R VR D Sbjct: 82 WDITDDWGVRHVGHIVNPVLDEIPAEHRRLVDESEGCLSVPGPYRVVSRPDRAVVRGRDM 141 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +I G A CLQHE DHL+G L++D L+R +R ++M++ Sbjct: 142 DGAPLVIEGLGYFARCLQHETDHLHGRLYLDRLTRRERQAALREMAEAK 190 >gi|154485069|ref|ZP_02027517.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] gi|149734022|gb|EDM50141.1| hypothetical protein EUBVEN_02792 [Eubacterium ventriosum ATCC 27560] Length = 165 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +P LR++ +P++++N LI +M + MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIRELGEPCLRKICKPVKEVNLRTKILIGDMFDTMYEANGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D P VFINP+II + Y+ CLS+P V R+ + V+ + N + Sbjct: 61 VDCGDEEGNSVPYVFINPEIIDREGVQTGYEG-CLSVPGKSGMVPRAQKVKVKAFNENME 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A+GLLA C+ HE DHL+GI+++D + Sbjct: 120 EFEMEAEGLLARCILHENDHLDGIVYVDKVE 150 >gi|295676828|ref|YP_003605352.1| peptide deformylase [Burkholderia sp. CCGE1002] gi|295436671|gb|ADG15841.1| peptide deformylase [Burkholderia sp. CCGE1002] Length = 177 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R++ P++ + ++ L+++M E M++ +G GLAA QIGV ++V+ Sbjct: 1 MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVEDMFETMHAANGAGLAAPQIGVNLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSK 160 >gi|312622713|ref|YP_004024326.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] gi|312203180|gb|ADQ46507.1| peptide deformylase [Caldicellulosiruptor kronotskyensis 2002] Length = 166 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIRTYEDEILRKKSKVVEKFDQRLCQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + EGCLS+P+ +V+R + V+ D Sbjct: 61 IDIGEGAIELVNPEIEQVEGNAVDV------EGCLSVPNVWGEVERPQKVIVKAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|254477587|ref|ZP_05090973.1| peptide deformylase [Ruegeria sp. R11] gi|214031830|gb|EEB72665.1| peptide deformylase [Ruegeria sp. R11] Length = 165 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I D+ L +M++ M + G+GLAA QIGVL RL V Sbjct: 1 MTVRTCLPWPDKHLRSRAVEVSEITDDVRALWQDMIDTMEAMPGVGLAANQIGVLQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S + E ++P A +KR +TVRYMD N + Sbjct: 61 VDGSSERGRAV--RMANPEILHASVALREHDEASPNLPGVSAKIKRPRAVTVRYMDENGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 119 TVERDFVGIEATSVQHQIDHLNGKMYFDNLSKVKRDMLLRKAKKL 163 >gi|68536091|ref|YP_250796.1| peptide deformylase [Corynebacterium jeikeium K411] gi|68263690|emb|CAI37178.1| polypeptide deformylase [Corynebacterium jeikeium K411] Length = 168 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + F DP+L+ V+ P++ ++ L+++MLE M G+GLAA QIG+ R Sbjct: 1 MTVLNMRYFGDPVLKTVADPVKPEQIQDAGTRRLVEDMLETMDHYGGVGLAANQIGITRR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D INP ++ EGCLSIPD DV R+ + +R + Sbjct: 61 IFVFDCDGDRG-----HVINPTWEAVGEETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + L+A C+QHE DHL+G+LFI HLS +R K++ + Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGVLFIQHLSTEQRREAMKQIRE 162 >gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101] Length = 200 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 92/153 (60%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + D +LR ++ I K++ I +L +ML MY+ GIGLAA QIG +L+VIDL+ Sbjct: 31 DIHTLGDQVLRTPAKRIGKVDDSIRSLARDMLVSMYAAKGIGLAAPQIGEPLQLLVIDLE 90 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P++ INP+I + Y+EGCLSIP DV R + + V Y D + + + Sbjct: 91 IEDPKSPPLILINPEITSVGGSLCTYEEGCLSIPGVYLDVVRPSVVDVSYRDEMGRPKRL 150 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 ADGL+A C+QHE+DHLNG+LF+D ++ + Sbjct: 151 KADGLMARCIQHEMDHLNGVLFVDRVTDHDKLR 183 >gi|86151304|ref|ZP_01069519.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315123790|ref|YP_004065794.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841651|gb|EAQ58898.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 260.94] gi|315017512|gb|ADT65605.1| peptide deformylase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 175 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S+ + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSKIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|134094555|ref|YP_001099630.1| peptide deformylase 2 like proterin [Herminiimonas arsenicoxydans] gi|133738458|emb|CAL61503.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Herminiimonas arsenicoxydans] Length = 178 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV+ P+++ N ++ LI +M + M++ G GLAA QIGV RLV Sbjct: 1 MTVREILKMGDPRLLRVAEPVKEFNTPELNALIADMFDTMHAAHGAGLAAPQIGVNLRLV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INPK+ S + EGCLS+P R V R + + Sbjct: 61 IYGFKQNTRYPDAPPVPETVLINPKLRPLSSEREEGWEGCLSVPGLRGVVPRFSSLHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + ADG A +QHE DHL+GIL+ + Sbjct: 121 FDQFGKAISRDADGFHARVVQHECDHLDGILYPMRIEDF 159 >gi|226310454|ref|YP_002770348.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226093402|dbj|BAH41844.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 171 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLV 59 M K ++ F DPILR+V++P+E++N L+D M E +Y+ DG GLAA QIG+L R+V Sbjct: 1 MAVKQILPFGDPILRKVAKPVEELNEKTFKLLDEMAETLYAADGRAGLAAPQIGILRRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D D I + E CLS P Y +VKR+ + V+ ++ Sbjct: 61 VMDCGDGLIELINPEIIERSGE------QIGMEACLSFPGYYGNVKRAEHVKVKTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I+ DG LA C+QHE+DHL+GILF+DH+ Sbjct: 115 EEMILAGDGFLAVCMQHEIDHLDGILFVDHV 145 >gi|148240675|ref|YP_001226062.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849214|emb|CAK24765.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 177 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 8/158 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ P LR+ +R IE + LID++LE + G GLAA QI +R Sbjct: 1 MTIRAVLRLGHPALRQRARDIEDEVFGTQQLQTLIDDLLETKAARSGAGLAAPQIDEPWR 60 Query: 58 LVVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV+ + A V INP+I S+ S EGCLS+P R +V+R I + Sbjct: 61 VVVVGMGANPRYPEAPPVPERVLINPEITPLSEATSAGWEGCLSVPGLRGEVERWQRIHL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + D N +G A +QHE DHL+G+LF D L Sbjct: 121 SWRDPNGGWHHEELEGFHARVVQHECDHLDGVLFPDRL 158 >gi|62317677|ref|YP_223530.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941] gi|62197870|gb|AAX76169.1| Def-1, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941] Length = 164 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A +G+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHVGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|121612384|ref|YP_999910.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|167004870|ref|ZP_02270628.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] gi|87250043|gb|EAQ73001.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 81-176] Length = 175 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + + INP+II ++ EGCLS+PD+ +VKR I ++Y D Sbjct: 61 NIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + + A G LA +QHE DHLNG LFI+ +S KR Sbjct: 121 GEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQ 158 >gi|254720523|ref|ZP_05182334.1| peptide deformylase [Brucella sp. 83/13] gi|265985555|ref|ZP_06098290.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306838109|ref|ZP_07470966.1| peptide deformylase [Brucella sp. NF 2653] gi|264664147|gb|EEZ34408.1| peptide deformylase-like protein [Brucella sp. 83/13] gi|306406846|gb|EFM63068.1| peptide deformylase [Brucella sp. NF 2653] Length = 164 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + D+ L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P +INP+I+ ++ +QEG +S+P +V+R A I + Y D + Sbjct: 61 L---ELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLCYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|254457336|ref|ZP_05070764.1| peptide deformylase [Campylobacterales bacterium GD 1] gi|207086128|gb|EDZ63412.1| peptide deformylase [Campylobacterales bacterium GD 1] Length = 174 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 102/170 (60%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +PD IL+++S +EK + ++ +L+D M +M T+GIGLAA+Q+ +++++ Sbjct: 1 MNLSIVEYPDKILKQISEKVEKFDKELHDLLDAMYPIMVKTNGIGLAAIQVARPKQVLIL 60 Query: 62 DLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + + I II D VYQEGCLS+P + D+ R ITV Y D +A Sbjct: 61 NIPEEDGEQPIENLIEMVNPIIVKKDGEIVYQEGCLSVPSFYEDIIRFENITVNYQDRDA 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + + A+GLL+ +QHE+DHL GILFID LS +R K+ ++ + + Sbjct: 121 NTKTLEANGLLSVAIQHEIDHLKGILFIDKLSYARRKKFEKEYKRMQKEK 170 >gi|325982985|ref|YP_004295387.1| peptide deformylase [Nitrosomonas sp. AL212] gi|325532504|gb|ADZ27225.1| peptide deformylase [Nitrosomonas sp. AL212] Length = 177 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L +V++P+++ + ++ LI +M + M +G GLAA QIGV ++V Sbjct: 1 MAIKPVLKMGEPLLLQVAKPVDRFDTPELHELIQDMQDTMAYLNGAGLAAPQIGVSLQVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP + SD+ EGCLS+P R V R + + Sbjct: 61 IFGFEKNQRYPDADEVPFTVLLNPHLTPLSDEKEDGWEGCLSVPGLRGIVPRYTNLHYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D +G A +QHE DHL GIL+ + + Sbjct: 121 FDQYGSAIDRNVNGFHARVVQHECDHLQGILYPMRIKDFR 160 >gi|269124846|ref|YP_003298216.1| peptide deformylase [Thermomonospora curvata DSM 43183] gi|268309804|gb|ACY96178.1| peptide deformylase [Thermomonospora curvata DSM 43183] Length = 178 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 80/161 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ DP+LR P+ ++ + L+D+M MY+ +G GLAA QIGV ++ V D Sbjct: 13 VRPIRRLGDPVLRTECDPVRTFDAGLRRLVDDMFATMYAANGAGLAANQIGVSLQVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 +D R++ INP ++ D V EGCLS+P R R V +D + + Sbjct: 73 CEDDLGRRHVGHVINPVLVAEDGDIVVEDEGCLSVPGLRFPTPRYRHAVVEGVDLDNKPL 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I G A CLQHE HL G ++ID L R + + Sbjct: 133 RIEGTGYFARCLQHETYHLRGGVYIDVLKGETRREAMRAIR 173 >gi|303228554|ref|ZP_07315382.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] gi|302516801|gb|EFL58715.1| peptide deformylase [Veillonella atypica ACS-134-V-Col7a] Length = 162 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+II + CLS+P Y DV+R +TV+ +D + + Sbjct: 61 V---DDHAGSGLIALINPEIIHGEGSQIGLEG-CLSVPGYFGDVERFEKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I ADG LA QHE+DHL G LFI+ + L+R Sbjct: 117 KVMIKADGFLARIFQHEIDHLEGHLFIEKATNLRR 151 >gi|72162127|ref|YP_289784.1| peptide deformylase [Thermobifida fusca YX] gi|71915859|gb|AAZ55761.1| peptide deformylase [Thermobifida fusca YX] Length = 221 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 4/170 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +L R + + + ++ LID+M MY +G+GLAA Q+GV R+ V Sbjct: 37 VLRVTVVGEDVLHRRNADVTEFGTPELHTLIDDMFRTMYVAEGVGLAANQVGVDLRVFVY 96 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ INP + T+ + V EGCLS+P A++ R+ + V D + Sbjct: 97 DCPDDDGVRHVGHVINPVLETWGAEEEGLVVENEGCLSVPGPHAELARAPYARVTGFDRD 156 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A CLQHE DH G L+ID LS+ +R + K M ++ Sbjct: 157 GNPVTVEGSGYFARCLQHETDHTLGRLYIDRLSKRERKKVLKAMEEMRDQ 206 >gi|325849091|ref|ZP_08170583.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480336|gb|EGC83399.1| peptide deformylase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 153 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + + CLS+P++ A+VKR A + V+Y+D N + Sbjct: 61 VDIRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVIVKYLDENGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNG+LFID Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGVLFID 144 >gi|295840257|ref|ZP_06827190.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827867|gb|EDY45695.2| peptide deformylase [Streptomyces sp. SPB74] Length = 196 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 74/159 (46%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + P+L +R + L++++ MY+ G+GLAA QIG RL V D Sbjct: 26 VRPLSLHGAPVLTTPARESGDFGPRLEKLVEDLFATMYAARGVGLAAPQIGEGVRLFVYD 85 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A R V + + Sbjct: 86 CPDDEDERHLGHLVNPRLVEVDGPLVRGPEGCLSLPGLEAATPRFDRAVVEGRTADGTRR 145 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DHL G L++D L +R + ++ Sbjct: 146 RVEGTGFFARCLQHEYDHLEGGLYVDRLDPRRRRKVLRE 184 >gi|160893328|ref|ZP_02074115.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] gi|156865020|gb|EDO58451.1| hypothetical protein CLOL250_00877 [Clostridium sp. L2-50] Length = 153 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +LR+ +P+ ++ + LID+M + MY +G+GLAA Q+G++ R+VV Sbjct: 1 MATRKIRIDGDSVLRKKCKPVTEMTPRLSQLIDDMFDTMYEANGVGLAAPQVGIVKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D +P+ INP+II S + + + CLS+P V R + + +D + Sbjct: 61 IDIGDE----HPLTLINPEIIETSGEQTGDEG-CLSLPGKVGQVTRPMHVVCKALDRDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA + HE DHL GIL+ D + Sbjct: 116 EITVTGEGLLARAICHETDHLEGILYKDKVED 147 >gi|85700131|gb|ABC74515.1| polypeptide deformylase [Helicobacter pylori] gi|85700141|gb|ABC74520.1| polypeptide deformylase [Helicobacter pylori] Length = 174 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 100/171 (58%), Gaps = 2/171 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + ILR +S+ + ++ + + +M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYSSKILRTISKEVVSFDAKLHQQLVDMYETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDD--FSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 I+L ++ + F + +Y+EGCLS+P + +V+R + + Y + Sbjct: 61 INLPQEDGVQHKEDCLEIINPKFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+ +++ A LLA +QHE+DHLNG+LF+D LS LKR K++ +L + + Sbjct: 121 AEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELKELQKKQ 171 >gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405] gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402] Length = 169 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 5/159 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + LR VS+P+EKI+ +I +LID M + +GIGLAA Q+G RL ++ + Sbjct: 2 KVLYLGEETLREVSKPVEKIDENIKSLIDEMFVTVKKENGIGLAAPQVGENIRLFIVFIN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + VFINP+II S + + +EGCLSIP +V R + + V++++ + + + I Sbjct: 62 E-----QKYVFINPEIIETSQEMCLMEEGCLSIPKVYDEVMRPSAVKVQFLNIDGKIKTI 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A GLLA +QHE DHLNGILFID LS K+ +K Sbjct: 117 EASGLLARVIQHENDHLNGILFIDRLSEEKKAEAIEKFE 155 >gi|254438825|ref|ZP_05052319.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198254271|gb|EDY78585.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 164 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 85/159 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV + + ++P +L + P + D+ LI+++ + MY G LAA QIGV R+ V Sbjct: 1 MVTRDIRLWPHAVLTQTCAPASLNDPDLDGLIEDLFDTMYHAKGRVLAAPQIGVTKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P FINP+I + D E CLSIPD V R + +R+ + + Sbjct: 61 VDVTWKDGIRDPRAFINPQITETAGDTVFMDEQCLSIPDTPMPVARPEAVQLRWANRDGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + DG+LA C+QHELDHLNG + DH S R + Sbjct: 121 LETAPFDGILARCIQHELDHLNGTVIFDHQSPEVRAELE 159 >gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough] gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4] gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1] Length = 171 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 70/168 (41%), Positives = 101/168 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L I++I DI L +M+E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREVLKYPDERLAIECDDIDEITDDIRQLAADMVETMYREDGIGLAAPQVGANCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ M FINP++ D+ +EGCLS+P RA V+R + + D + Sbjct: 61 DVSGPEKRESLMTFINPRLEPLGDEKVESEEGCLSVPALRAKVERHERVRLTARDLDGNE 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ADGLLA CLQHE+DHL G LFID +SRLKR + K+ K ++ R Sbjct: 121 VCMDADGLLAICLQHEIDHLGGTLFIDRISRLKRSLYDAKVKKWLKAR 168 >gi|126660127|ref|ZP_01731246.1| polypeptide deformylase [Cyanothece sp. CCY0110] gi|126618570|gb|EAZ89320.1| polypeptide deformylase [Cyanothece sp. CCY0110] Length = 169 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +PILR+ ++ + I + + LID +L G+G+AA Q+ YRL ++ Sbjct: 6 LEIAQVGNPILRQQAQYVTDITDEKLQQLIDTLLTTAIDAKGVGIAAPQVSQSYRLFIVC 65 Query: 63 LQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 A P V INP +++ S++ EGCLS+P R V R ITV Y+D Sbjct: 66 SHPNSRYPDAPSMEPTVMINPCLVSHSEEMVKGWEGCLSVPGVRGLVSRYQKITVEYLDR 125 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +A QHELDHLNGILFID ++ Sbjct: 126 YGKLHQQEFTDFVARIFQHELDHLNGILFIDRVN 159 >gi|297623929|ref|YP_003705363.1| peptide deformylase [Truepera radiovictrix DSM 17093] gi|297165109|gb|ADI14820.1| peptide deformylase [Truepera radiovictrix DSM 17093] Length = 212 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 30/197 (15%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K + F DP+LR+V+RP+ + ++ L +M+E M+ +G+GLAA QIG+ RL V Sbjct: 1 MKYHIRYFGDPVLRKVARPVTHFDGELETLAKDMIETMFEANGVGLAAPQIGLSKRLFVA 60 Query: 62 --------------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95 + ++ V +NP+II S Sbjct: 61 LELAPRAAEEAAGQEGEAEAEALSPDEKRERWGVVAEHVMVNPEIIARSGTQYGVDGCLS 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +KR + VRY D A+G A +QHELDHL+G+LF D L +R Sbjct: 121 VPGLFIEKMKRDRTVRVRYQDLQGAWHEREAEGHFAHVIQHELDHLDGVLFFDRLPEAER 180 Query: 156 DMIT----KKMSKLVQL 168 +++++L + Sbjct: 181 RAFMEAHRRELAELQRQ 197 >gi|256544906|ref|ZP_05472277.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] gi|256399405|gb|EEU13011.1| peptide deformylase [Anaerococcus vaginalis ATCC 51170] Length = 154 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 96/148 (64%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + + CLS+P++ A+VKR A + V+Y+D N Sbjct: 61 VDVRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVVVKYLDENGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNGILFID Sbjct: 117 EKKIEAEGLKAVALCHEIDHLNGILFID 144 >gi|111222219|ref|YP_713013.1| peptide deformylase 2 [Frankia alni ACN14a] gi|111149751|emb|CAJ61443.1| Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) [Frankia alni ACN14a] Length = 190 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 5/167 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ DP+LR + + ++ + L+ +M++ MY G+GLAA QIGV R+ V D Sbjct: 1 MLPIRTVGDPVLRTPTALVTTFDAALARLVHDMIDTMYDAPGVGLAAPQIGVGLRVFVFD 60 Query: 63 LQDHAHRKNPMVFINPKI-----ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + + + QEGCLS+P R+ +VR +D Sbjct: 61 VGYDPRDVTVPRVPRVVVNPVLELAADGEQQEGQEGCLSVPGLHFSTTRALRASVRGVDV 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GLLA C QHE+DHL+G L++D L+ +R + + + Sbjct: 121 TGAAVEYAGEGLLARCFQHEVDHLDGTLYLDRLTGEERRAAVQALRE 167 >gi|124023604|ref|YP_001017911.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|123963890|gb|ABM78646.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 181 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 7/157 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS+ ++ ++++++ +LI ++ + + + G GLAA QIG+ R+V Sbjct: 1 MAVKEILRMGNPQLRQVSKVVDDVSAELIISLIKDLQDTVKAHQGAGLAAPQIGIPLRVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIDSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + +G A +QHE DHL+G+LF D L Sbjct: 121 ALNEDGLEIEHCLEGFPARVIQHECDHLDGVLFTDRL 157 >gi|56698049|ref|YP_168420.1| peptide deformylase [Ruegeria pomeroyi DSS-3] gi|56679786|gb|AAV96452.1| peptide deformylase [Ruegeria pomeroyi DSS-3] Length = 165 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I +I + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MTVRRCLPWPDKHLRTRAAEVSEITDEIRAIWTDMIDTMEAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R NP+I+ S + + E ++P A +KR +TVR+++ Q Sbjct: 61 VDGSSERGRAV--RLANPEILHASIELREHDEASPNLPGVSAKLKRPRAVTVRFLNEQGQ 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 G+ AT +QH++DHLNG ++ D+LS++KRDM+ +K KL Sbjct: 119 VDRRDFVGIEATSVQHQIDHLNGRMYFDNLSKVKRDMLLRKARKL 163 >gi|227549209|ref|ZP_03979258.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] gi|227078663|gb|EEI16626.1| peptide deformylase [Corynebacterium lipophiloflavum DSM 44291] Length = 166 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ +F DP+L P+ + + + L+ ++L M G+GLAA Q+GV R+ V Sbjct: 1 MAVRPIRLFGDPVLNSAVAPVTRFDEALRVLVCDLLNTMDDAGGVGLAANQVGVDARVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D Q INP + D+ + +EGCLS+P V R + R +D + + Sbjct: 61 FDCQG-----MRGHIINPSWASAGDEVQIGREGCLSVPGISGPVSRYNRVVARGVDADGR 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 I GLLA C+QHE DHL+GI+F+ + R Sbjct: 116 PLAISGTGLLARCIQHESDHLDGIMFMRRMDSAARKEAM 154 >gi|33519686|ref|NP_878518.1| peptide deformylase [Candidatus Blochmannia floridanus] gi|39930852|sp|Q7VQC0|DEF_BLOFL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus Blochmannia floridanus] Length = 175 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD LR+++R + I+ D +I +M E MY GIGLAA Q+ + +++V Sbjct: 1 MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL ++ ++ VFINP II + EGCLSIP RA V RS I V+ +D N Sbjct: 61 IDLNNNIQKRL--VFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + A LL+ C+QHE+DHL G LFID+LS K I KK++K Sbjct: 119 NFEMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINK 162 >gi|288925815|ref|ZP_06419746.1| peptide deformylase [Prevotella buccae D17] gi|288337470|gb|EFC75825.1| peptide deformylase [Prevotella buccae D17] Length = 186 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VI Sbjct: 1 MILPIYIYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL + I +EGCLSIP +V R I V+Y Sbjct: 61 DLDVLSDDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ + Sbjct: 121 RDTDFVEHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 175 >gi|302544000|ref|ZP_07296342.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302461618|gb|EFL24711.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 205 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + + +L R + + ++ LID+M MY DG GLAA Q+GV RL V Sbjct: 16 SVRRITVVGEEVLSRPCQEVTTFGTPELAALIDDMFLTMYVADGAGLAANQVGVDLRLFV 75 Query: 61 IDLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D ++ +NP EGCLS+P V R+ VR D Sbjct: 76 YDCPDETGARHVGHILNPVLDLPDPGDRRLVDDIEGCLSVPGAAMAVPRTDRAVVRGFDK 135 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +I G A CLQHE DHL G L++D LS+ R ++M + Sbjct: 136 DGNPLVIEGQGYFARCLQHETDHLMGHLYLDRLSQRDRKDALRQMEE 182 >gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109] gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109] Length = 201 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 95/161 (59%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ +R I K+N + L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 31 LEIHTLGDEVLRQSARRIGKVNEQVRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I S Y+EGCLSIP DV R I + + D + + Sbjct: 91 DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL+A C+QHE+DHLNG+LF+D ++ D + K++ + Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTDE--DGLQKELKE 189 >gi|328951365|ref|YP_004368700.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328451689|gb|AEB12590.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 197 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 17/183 (9%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ ++ DPILRR + P+E + I L +N+ E M+ G+GLAA Q+G+ RL Sbjct: 4 MATIYPIRLYGDPILRRRALPVEAFD-GIPELAENLFETMFEAGGVGLAAPQVGISRRLF 62 Query: 60 VIDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V + K V +NP I + Y +V R Sbjct: 63 VAAEYLDEEEEAEDTPLKSRVKQLYVMVNPVITYREGHQVGTEGCLSLPGLYSDEVPRDL 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI----TKKMSK 164 + V+Y D + +++ A+G LA +QHELDHL G LFID L R ++++ Sbjct: 123 RVRVQYQDEYGEPKVLEAEGYLARVIQHELDHLEGKLFIDRLPPEARRAFINEHRAELAE 182 Query: 165 LVQ 167 + + Sbjct: 183 MQR 185 >gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276] gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s] gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923] gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1] gi|6831532|sp|O84357|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123606946|sp|Q3KM05|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687417|sp|B0B7S2|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238687475|sp|B0BBY7|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX] gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13] gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis] gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis] gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu] gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT] gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768] gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222] gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074] gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301] Length = 181 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|282863154|ref|ZP_06272214.1| peptide deformylase [Streptomyces sp. ACTE] gi|282562136|gb|EFB67678.1| peptide deformylase [Streptomyces sp. ACTE] Length = 166 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 63/141 (44%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + DP+L + + L+++M MY+ G+GLAA QIGV R+ V D D Sbjct: 3 LLGDPVLHSPCEEVTDFGPSLARLVEDMFATMYAAHGVGLAANQIGVPLRVFVYDCPDDD 62 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ +NP + EGCLS+P A R V + + Sbjct: 63 EVRHLGHLVNPVCVEADGITVRGPEGCLSLPGLEAGTPRFDRTVVEGRTVTGEPVRVTGT 122 Query: 128 GLLATCLQHELDHLNGILFID 148 G A CLQHE DHL+G ++ D Sbjct: 123 GWFARCLQHECDHLDGTVYPD 143 >gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group] Length = 260 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 86/167 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 58 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 117 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + S VY+E CLS P A+V R + + D Sbjct: 118 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 177 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D +S + + + + L + + Sbjct: 178 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 224 >gi|314923773|gb|EFS87604.1| peptide deformylase [Propionibacterium acnes HL001PA1] Length = 200 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +L +RP+ + + D+ L+ +M M +TDG+GLAA Q+GV L V Sbjct: 20 SLRRVTRWGESVLHAQTRPVTEFDEDLTTLVRDMFATMNATDGVGLAATQVGVDLSLFVY 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA---DVKRSAFITVRYMDCN 118 D + + F NP + + + + R T D Sbjct: 80 ICPDANNVVHHGAFCNPVVTLPEGHDRHLEAADEGCLSWPGGFQSMARPDLATCTGQDPW 139 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DH NGI+F D LS+ R + ++ Sbjct: 140 GNDITVTGTGFFARCLQHETDHCNGIVFGDRLSKRARRKLDEQ 182 >gi|282863355|ref|ZP_06272414.1| peptide deformylase [Streptomyces sp. ACTE] gi|282561690|gb|EFB67233.1| peptide deformylase [Streptomyces sp. ACTE] Length = 219 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + + +L R + + + + LID+M MY DG GLAA Q+ V RL V Sbjct: 36 SVRRITVVGEEVLSRPCQEVTSFGSPGLAALIDDMFVTMYVADGAGLAANQVDVDLRLFV 95 Query: 61 IDLQDHAHRKNPMVFINP---KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D D ++ +NP + S EGCLS+P + R+ TVR D Sbjct: 96 YDCPDDQGVRHVGHIVNPVLDQPDPGSRRLVDDSEGCLSVPGASMTLPRTDRATVRGFDK 155 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +I G A CLQHE DHL G ++D LS+ R ++M + Sbjct: 156 DGNPLVIEGTGYFARCLQHESDHLVGHTYLDRLSKRDRKDALRQMEE 202 >gi|94987209|ref|YP_595142.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] gi|94731458|emb|CAJ54821.1| N-formylmethionyl-tRNA deformylase [Lawsonia intracellularis PHE/MN1-00] Length = 171 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 1/164 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD L+++S ++ I DI NL M++ MY +GIGLAA Q+G L RL+V+ Sbjct: 1 MSLKILQYPDISLQKISLEVQDITQDIHNLAKQMVQTMYDANGIGLAAPQVGYLLRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ + + +V INPKI D F +EGCLS+PDYR+ VKR A + + +D ++ Sbjct: 61 DVSGPEQKSSLLVLINPKITPVIDSGFIEGEEGCLSVPDYRSKVKRHAKVLLDAIDLDSN 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+GLL+ CLQHE+DHL+G LFID +S LKR + ++ K Sbjct: 121 PVSFEAEGLLSVCLQHEIDHLDGKLFIDRVSYLKRKLYDGRLKK 164 >gi|88607030|ref|YP_505871.1| peptide deformylase [Anaplasma phagocytophilum HZ] gi|88598093|gb|ABD43563.1| peptide deformylase [Anaplasma phagocytophilum HZ] Length = 187 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 76/185 (41%), Positives = 108/185 (58%), Gaps = 16/185 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M +PLV+ PD L S + + + +L+++M + MY+ GIGLAAVQ+GV R+ Sbjct: 1 MSVRPLVVLPDSRLFLCSEEVRETDFCEKFNSLVEDMFDTMYAEQGIGLAAVQVGVHKRI 60 Query: 59 VVIDLQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VIDL PMV INP+I+ S D +EGCLS+PD R V Sbjct: 61 FVIDLGPKTEESSEIADDPDGYHSTCGPMVVINPEIVEKSVDLVSMEEGCLSVPDQRELV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R I ++Y D + + +I+ A GLL+ CLQHE+DHLNG +F+ H+S+LKRD++ +KM K Sbjct: 121 VRPERIVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFLKHISKLKRDLVMQKMRK 180 Query: 165 LVQLR 169 LR Sbjct: 181 AASLR 185 >gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group] Length = 267 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 87/167 (52%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 78 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 137 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + S VY+EGCLS P A+V R + + D Sbjct: 138 AGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 197 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D +S + + + + L + + Sbjct: 198 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 244 >gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group] gi|75251983|sp|Q5VNN5|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B; Short=PDF 1B; Flags: Precursor gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group] gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group] gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group] gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group] Length = 269 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 87/167 (52%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 78 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 137 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + S VY+EGCLS P A+V R + + D Sbjct: 138 AGVKGEGEEIVLVNPVVYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 197 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D +S + + + + L + + Sbjct: 198 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 244 >gi|288928223|ref|ZP_06422070.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] gi|288331057|gb|EFC69641.1| peptide deformylase [Prevotella sp. oral taxon 317 str. F0108] Length = 187 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54 + P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG V Sbjct: 1 MILPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ ++ + + + I +EGCLS+P V R I ++Y Sbjct: 61 DLDVLAETYPEYKGYRKAFINPHIVEIDEQSPTESLEEGCLSLPGIHEKVTRHTRIRMQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + + + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q + Sbjct: 121 VDEDLKPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175 >gi|237755423|ref|ZP_04584049.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692423|gb|EEP61405.1| peptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 177 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 + I+PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 4 KIRIWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTS 63 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ MV INPKI+ + + CLS P + + R+ + V + Sbjct: 64 LRENRSEEETEPPVKMVLINPKIVEKEGEVQSTEG-CLSFPGVQITIPRAKRVKVVGKNE 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I + LA LQHE+DHLNGI FI++LS LKR ++ K K ++ + Sbjct: 123 KGEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175 >gi|310815112|ref|YP_003963076.1| peptide deformylase [Ketogulonicigenium vulgare Y25] gi|308753847|gb|ADO41776.1| peptide deformylase [Ketogulonicigenium vulgare Y25] Length = 163 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 2/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++P P+LR+ + +E I +I L D M+E M + G+GLAAVQ+GV L V+ Sbjct: 1 MHRPFVMWPAPVLRKPAAQVEAITPEITALWDEMVEAMDAMPGVGLAAVQLGVPLALAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R + NP+I+ S ++E ++P A + R +TVR+++ + Sbjct: 61 DASD--ARGQAIRMANPEILHASVQLREHEEASPNLPGISAVISRPRAVTVRFLNAWGEV 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH++DHL G ++ D LS++KRDM +K K Sbjct: 119 EERDLVGLWATSMQHQIDHLAGKMYFDRLSKIKRDMFLRKARK 161 >gi|260578786|ref|ZP_05846693.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|258603084|gb|EEW16354.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 168 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + F DP+L+ V+ P++ ++ L+++MLE M G+GLAA QIG+ R Sbjct: 1 MTVLNMRYFGDPVLKTVADPVKPEQIQDAATRRLVEDMLETMDHYGGVGLAANQIGITRR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + V D INP D+ EGCLSIPD DV R+ + +R + Sbjct: 61 IFVFDCDGDRG-----HVINPTWEAVGDETQTGGEGCLSIPDVHGDVTRAQRVRLRGVTV 115 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + L+A C+QHE DHL+G LFI HLS +R K++ + Sbjct: 116 DGEQVDREVTDLMARCVQHETDHLDGTLFIQHLSAEQRREAMKQIRE 162 >gi|20807950|ref|NP_623121.1| peptide deformylase [Thermoanaerobacter tengcongensis MB4] gi|23396539|sp|Q8R9T0|DEF_THETN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase [Thermoanaerobacter tengcongensis MB4] Length = 159 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ ++P+ +INS I+ ++++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MAIRYIRKIGDPVLRKKAKPVTEINSHIITILEDMAETMYLNDGVGLAANQVGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + EGCLSIP +VKR + VRY+D Sbjct: 61 IDVGEGLLELINPEIVYEEGEQIGP------EGCLSIPGVFGEVKRPQKVKVRYLDREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHL G+LF+D + R Sbjct: 115 VKEIVGEDLLARALCHEIDHLEGVLFVDKVIRF 147 >gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6] Length = 162 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PIL+ V+ P+E +N + LI++M + MY T+G+GLAA Q+ V R++V Sbjct: 1 MAVLEVVKAGHPILKEVAEPVEHVNKKMRALIEDMADTMYKTEGVGLAAPQVNVSKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + D + INP+II + CLS+P Y DV+R +TV+ +D + + Sbjct: 61 V---DDHAGSGLIALINPEIIHGEGSQIGLEG-CLSVPGYFGDVERFEKVTVKGIDPHNK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +I A+G LA QHE+DHL G LFI+ + L+R Sbjct: 117 KVMIKAEGFLARIFQHEIDHLEGHLFIEKATNLRR 151 >gi|260912122|ref|ZP_05918678.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] gi|260633728|gb|EEX51862.1| peptide deformylase [Prevotella sp. oral taxon 472 str. F0295] Length = 187 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------V 54 + P+ I+ +LR+V++ I ++ LI NM E M ++DGIGLAA QIG V Sbjct: 1 MTLPVYIYGQQVLRKVAQDIPLDYPNLKELIQNMFETMEASDGIGLAAPQIGLDIRLLVV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ ++ + + + I +EGCLS+P V R I V+Y Sbjct: 61 DLDVLAETYPEYKGYRKAFINPHIVEIDKQSPTESLEEGCLSLPGIHEKVTRHTRIRVQY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +D + Q + +G L LQHE+DHL+GILF DHLS ++ +I K+ L+Q + Sbjct: 121 VDEDLQPHDEWFEGYLTRVLQHEVDHLDGILFTDHLSPFRKQLIKNKLKALLQGK 175 >gi|170754628|ref|YP_001782053.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169119840|gb|ACA43676.1| peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 147 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EVVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans] Length = 315 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 1/160 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ +PDP LR + I + + L D M +VMY DG GLAA Q+G+ YRL+V + Sbjct: 122 LNVIKYPDPRLRTENEKITEFGKPLQELADEMFDVMYDDDGCGLAAPQVGINYRLMVFNP 181 Query: 64 Q-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 Q D + MV NP+II+ ++ ++EGCLS P R V+R + +R D + Sbjct: 182 QGDRRKKDTEMVLANPEIISSGEEKDWFREGCLSFPGIRGQVERPTKVLIRAQDVKGEDI 241 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +G A QHE DHL+G LF D + + I K+ Sbjct: 242 EFELEGFTARVFQHEYDHLSGTLFHDRMPDKEVAEIHAKL 281 >gi|54024621|ref|YP_118863.1| peptide deformylase [Nocardia farcinica IFM 10152] gi|54016129|dbj|BAD57499.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152] Length = 190 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I DP L ++P+ + ++ L+D++ + + + +G GLAA QIG + V Sbjct: 1 MAIRPILIAGDPRLTTPAQPVTVFDDELAALVDDLFDTLAAAEGAGLAANQIGDPRAVFV 60 Query: 61 IDLQDHAHRKNPMVFIN----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 DL DH HR +V + D EGCLS+P R+ V +D Sbjct: 61 YDLVDHGHRYRGVVVNPVAETSALPETMPDPEGDLEGCLSVPGEWYPTGRADRARVTGLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRDMIT 159 + G LA CLQHE DHL G L+++ L +R R MI Sbjct: 121 ATGAPITVEGTGYLARCLQHETDHLAGRLYLERLLGRHARAARRMIK 167 >gi|163815237|ref|ZP_02206614.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] gi|158449432|gb|EDP26427.1| hypothetical protein COPEUT_01397 [Coprococcus eutactus ATCC 27759] Length = 155 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ RP+ K++ + LID+M + MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRLDGDDILRKTCRPVTKMDDRTLTLIDDMFDTMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D NP+ INP+II + +EGCLS+P V R + + D N + Sbjct: 61 IDVCDD----NPLCLINPEIIEADGE-QTGEEGCLSLPGKFGTVTRPMHVVCKAYDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HELDHL+G L+ D Sbjct: 116 EFTVEGEGLLARAICHELDHLDGKLYKD 143 >gi|119383397|ref|YP_914453.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373164|gb|ABL68757.1| peptide deformylase [Paracoccus denitrificans PD1222] Length = 166 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 94/167 (56%), Gaps = 2/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P + + D L + P+ I + + D+M++ M + G+GLAA QIG++ RL V Sbjct: 1 MTVRPFLPYADRRLHLPAEPVPAITETVRMIWDDMIDTMEAMPGVGLAAPQIGIMQRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + NP+++ S ++E ++P A ++R +TVR+++ + + Sbjct: 61 VDASEKRGQAV--RMANPEVLHASVQLRAHEEASPNLPGVSARIERPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GL AT +QH++DHLNG L++D+LS L+R M+ K +K + Sbjct: 119 IEERDFVGLWATSVQHQIDHLNGRLYVDYLSPLRRKMLVAKSAKFAR 165 >gi|188589463|ref|YP_001920560.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|251778927|ref|ZP_04821847.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689669|sp|B2V4B1|DEF_CLOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|188499744|gb|ACD52880.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|243083242|gb|EES49132.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 147 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL + Sbjct: 1 MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D ++ V +EGCLS+P V R ++ R ++ + Sbjct: 61 VDIGDGPLVFINPEILDTDGK------QVDEEGCLSLPGKTEPVMRPNYVKARALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID ++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146 >gi|261344111|ref|ZP_05971755.1| peptide deformylase [Providencia rustigianii DSM 4541] gi|282567702|gb|EFB73237.1| peptide deformylase [Providencia rustigianii DSM 4541] Length = 168 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID+++E MYSTD IGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCAPVTDF-AAVQTLIDDLIETMYSTDTGIGLAAPQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + R PMVFINP+II + S + CLS+PD ADV R + V+ D + Sbjct: 60 VIDISEE--RNQPMVFINPEIIESEGETSYQEG-CLSVPDVYADVPRFQRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 I+ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFIVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|23500203|ref|NP_699643.1| peptide deformylase [Brucella suis 1330] gi|83269660|ref|YP_418951.1| peptide deformylase [Brucella melitensis biovar Abortus 2308] gi|161511169|ref|NP_541790.2| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|161620522|ref|YP_001594408.1| peptide deformylase [Brucella canis ATCC 23365] gi|163844620|ref|YP_001622275.1| peptide deformylase [Brucella suis ATCC 23445] gi|189022926|ref|YP_001932667.1| peptide deformylase [Brucella abortus S19] gi|225686258|ref|YP_002734230.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|254691174|ref|ZP_05154428.1| peptide deformylase [Brucella abortus bv. 6 str. 870] gi|254698957|ref|ZP_05160785.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59] gi|254699710|ref|ZP_05161538.1| peptide deformylase [Brucella suis bv. 5 str. 513] gi|254702846|ref|ZP_05164674.1| peptide deformylase [Brucella suis bv. 3 str. 686] gi|254706033|ref|ZP_05167861.1| peptide deformylase [Brucella pinnipedialis M163/99/10] gi|254711667|ref|ZP_05173478.1| peptide deformylase [Brucella pinnipedialis B2/94] gi|254732404|ref|ZP_05190982.1| peptide deformylase [Brucella abortus bv. 4 str. 292] gi|256015237|ref|YP_003105246.1| peptide deformylase [Brucella microti CCM 4915] gi|256029699|ref|ZP_05443313.1| peptide deformylase [Brucella pinnipedialis M292/94/1] gi|256043351|ref|ZP_05446286.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1] gi|256059334|ref|ZP_05449536.1| peptide deformylase [Brucella neotomae 5K33] gi|256111642|ref|ZP_05452632.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether] gi|256157852|ref|ZP_05455770.1| peptide deformylase [Brucella ceti M490/95/1] gi|256253186|ref|ZP_05458722.1| peptide deformylase [Brucella ceti B1/94] gi|256256360|ref|ZP_05461896.1| peptide deformylase [Brucella abortus bv. 9 str. C68] gi|256262606|ref|ZP_05465138.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|260544911|ref|ZP_05820732.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260564557|ref|ZP_05835042.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260568243|ref|ZP_05838712.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260756775|ref|ZP_05869123.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260760206|ref|ZP_05872554.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260763444|ref|ZP_05875776.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882591|ref|ZP_05894205.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|261220293|ref|ZP_05934574.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261313474|ref|ZP_05952671.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261319290|ref|ZP_05958487.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261323293|ref|ZP_05962490.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261750174|ref|ZP_05993883.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261753446|ref|ZP_05997155.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|265986710|ref|ZP_06099267.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] gi|265989773|ref|ZP_06102330.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993119|ref|ZP_06105676.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|265996360|ref|ZP_06108917.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|54036957|sp|P63920|DEFL_BRUSU RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040933|sp|P63919|DEFL_BRUME RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|23463805|gb|AAN33648.1| polypeptide deformylase [Brucella suis 1330] gi|82939934|emb|CAJ12948.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus 2308] gi|161337333|gb|ABX63637.1| peptide deformylase [Brucella canis ATCC 23365] gi|163675343|gb|ABY39453.1| peptide deformylase [Brucella suis ATCC 23445] gi|189021500|gb|ACD74221.1| Formylmethionine deformylase [Brucella abortus S19] gi|225642363|gb|ACO02276.1| peptide deformylase [Brucella melitensis ATCC 23457] gi|255997897|gb|ACU49584.1| peptide deformylase [Brucella microti CCM 4915] gi|260098182|gb|EEW82056.1| peptide deformylase [Brucella abortus NCTC 8038] gi|260152200|gb|EEW87293.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M] gi|260154908|gb|EEW89989.1| peptide deformylase [Brucella suis bv. 4 str. 40] gi|260670524|gb|EEX57464.1| polypeptide deformylase-like protein [Brucella abortus bv. 4 str. 292] gi|260673865|gb|EEX60686.1| polypeptide deformylase-like protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676883|gb|EEX63704.1| polypeptide deformylase-like protein [Brucella abortus bv. 6 str. 870] gi|260872119|gb|EEX79188.1| peptide deformylase-like protein [Brucella abortus bv. 9 str. C68] gi|260918877|gb|EEX85530.1| peptide deformylase-like protein [Brucella ceti B1/94] gi|261298513|gb|EEY02010.1| peptide deformylase-like protein [Brucella pinnipedialis B2/94] gi|261299273|gb|EEY02770.1| peptide deformylase-like protein [Brucella neotomae 5K33] gi|261302500|gb|EEY05997.1| peptide deformylase-like protein [Brucella pinnipedialis M163/99/10] gi|261739927|gb|EEY27853.1| peptide deformylase-like protein [Brucella suis bv. 5 str. 513] gi|261743199|gb|EEY31125.1| peptide deformylase-like protein [Brucella suis bv. 3 str. 686] gi|262550657|gb|EEZ06818.1| peptide deformylase-like protein [Brucella ceti M490/95/1] gi|262763989|gb|EEZ10021.1| peptide deformylase-like protein [Brucella melitensis bv. 3 str. Ether] gi|263000442|gb|EEZ13132.1| peptide deformylase-like protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092392|gb|EEZ16645.1| peptide deformylase-like protein [Brucella melitensis bv. 2 str. 63/9] gi|264658907|gb|EEZ29168.1| peptide deformylase-like protein [Brucella pinnipedialis M292/94/1] Length = 164 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|269958379|ref|YP_003328166.1| peptide deformylase [Anaplasma centrale str. Israel] gi|269848208|gb|ACZ48852.1| peptide deformylase [Anaplasma centrale str. Israel] Length = 199 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 17/180 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 PLV PD L S + + + L ++ML+ MY GIGLAAVQ+GV R+ Sbjct: 13 SVLPLVTLPDSRLSLCSEEVHADDFGQQLETLANDMLDTMYHNKGIGLAAVQVGVHKRIF 72 Query: 60 VIDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 V+DL+ + P V +NP I+ S+ +EGCLS+PDYR V Sbjct: 73 VVDLEYGSDRYEVPRDDGAGEFRATCGPTVVVNPVIVEESERLVAMEEGCLSVPDYRETV 132 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +R I V+Y+D N + + I A GLLA CLQHELDHLNG++F+ +S+LKRDM+ +K+ + Sbjct: 133 RRPESIVVQYVDLNRRQKYIKACGLLARCLQHELDHLNGVVFLQRISKLKRDMVMEKIRR 192 >gi|170759595|ref|YP_001787825.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169406584|gb|ACA54995.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 147 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MYS +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYSAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|218259650|ref|ZP_03475313.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] gi|218224966|gb|EEC97616.1| hypothetical protein PRABACTJOHN_00972 [Parabacteroides johnsonii DSM 18315] Length = 185 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 94/172 (54%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VI Sbjct: 1 MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP + S++ +EGCLS+P V RS + V+Y+D Sbjct: 61 DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSVKVRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172 >gi|188997413|ref|YP_001931664.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932480|gb|ACD67110.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 177 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 8/173 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 + +PDPIL+ ++ ++ + + I+ M E MY +G+GLAA QIG+ Y+++VID Sbjct: 4 KIRTWPDPILKEPTKEVDFFDERLQEYINKMWEFMYKEEGVGLAANQIGIPYQILVIDTS 63 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ A MV INPKI+ + + CLS P + + R+ + V + Sbjct: 64 LREKRSEEEAEPPVKMVLINPKIVEKEGEVQSTEG-CLSFPGVQITIPRAKRVKVVGKNE 122 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + I + LA LQHE+DHLNGI FI++LS LKR ++ K K ++ + Sbjct: 123 KGEDVEIESSEFLAIVLQHEIDHLNGIPFINYLSPLKRKLVLDKYLKSLKELE 175 >gi|281423116|ref|ZP_06254029.1| peptide deformylase [Prevotella oris F0302] gi|281402452|gb|EFB33283.1| peptide deformylase [Prevotella oris F0302] Length = 187 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60 Query: 62 D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D ++ + + + +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDYPEYKGLRKAFINAHILEFDEESPKETMEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + DG LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175 >gi|227874915|ref|ZP_03993067.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269976483|ref|ZP_06183468.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|306818239|ref|ZP_07451969.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307701754|ref|ZP_07638768.1| peptide deformylase [Mobiluncus mulieris FB024-16] gi|227844492|gb|EEJ54649.1| peptide deformylase [Mobiluncus mulieris ATCC 35243] gi|269935284|gb|EEZ91833.1| peptide deformylase [Mobiluncus mulieris 28-1] gi|304648978|gb|EFM46273.1| peptide deformylase [Mobiluncus mulieris ATCC 35239] gi|307613012|gb|EFN92267.1| peptide deformylase [Mobiluncus mulieris FB024-16] Length = 164 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + DP+LR I+ + + L++++LE + GLAA QIGV R Sbjct: 1 MAFREIRVVGDPVLRTPCEWIKDPRDPGVKQLVEDLLENVDQEGRAGLAANQIGVSLRAF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ V + D++ EGCLS+P+ +R+ + V +D + Sbjct: 61 SWNIDGEIG----YVLNPKLVEVSQDEYQDGDEGCLSVPNLFYPTERAWYARVEGIDLDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ++ + L+ CLQHE DHL GIL+ID L R R +++ K+ Sbjct: 117 KPVVVEGEELMGRCLQHETDHLEGILYIDKLERKYRKAALQQVRKM 162 >gi|3023625|sp|P94601|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601] Length = 187 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ ++ LI +ML+ MYS DGIGLAA Q+G+ +L+VIDL Sbjct: 17 LQLHYLGDRVLRQPAKRIAKVDDELRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDL 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S + V QEGCLSIP+ DVKR + + Y D N + + Sbjct: 77 EPDNPANPPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRPKT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LLA C+QHE+DHLNG++F+D + Sbjct: 137 LKATDLLARCIQHEMDHLNGVVFVDRVD 164 >gi|300726436|ref|ZP_07059884.1| peptide deformylase [Prevotella bryantii B14] gi|299776284|gb|EFI72846.1| peptide deformylase [Prevotella bryantii B14] Length = 185 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 6/174 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+V+ I ++ LI +M + + +++G+GLAA QIG RLVVI Sbjct: 1 MILPIYVYGQPVLRKVASDITPDYPELKQLIQDMFQTLDNSNGVGLAAPQIGKAIRLVVI 60 Query: 62 D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D + + S +EGCLSIP +V R I V+YM Sbjct: 61 DLDILKDEFPEYEGFRKVFINAHILEYDDTQESRMEEGCLSIPGLSENVVRPTRIHVKYM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N + +G A +QHE DHL GI+++D ++ L+++MI K+ +++ + Sbjct: 121 DENFVEHDEWVEGYKARVMQHEFDHLEGIMYVDKVNALRKNMIGGKLKNIMKGK 174 >gi|148380464|ref|YP_001255005.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931783|ref|YP_001384687.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937071|ref|YP_001388208.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|153938227|ref|YP_001391806.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|168180607|ref|ZP_02615271.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226949863|ref|YP_002804954.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|148289948|emb|CAL84061.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927827|gb|ABS33327.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932985|gb|ABS38484.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152934123|gb|ABS39621.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|182668570|gb|EDT80549.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|226842477|gb|ACO85143.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|295319831|gb|ADG00209.1| peptide deformylase [Clostridium botulinum F str. 230613] gi|322806777|emb|CBZ04346.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 147 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M+E MY+ +G+GLAA Q+G+L R VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMVETMYNAEGVGLAAPQVGILKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGEGLIKLINPEIIETEGNQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 EIVLEGEDLLARAFCHEIDHLDGVLFVDKV 144 >gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515] gi|158512726|sp|A2BU25|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9515] Length = 203 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + +LR ++ I K++ D NL +ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 31 LEIFKLGNDVLRTNAKRIGKVDLDTRNLAKDMLKSMYSAKGIGLAAPQVGISKELLVIDI 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I F + + Y+EGCLSIP +V R + I +R+ D + + Sbjct: 91 NFEDSAAEPLILINPEITAFGNTLNSYEEGCLSIPGVYLNVVRPSTIKLRFSDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLLA C+QHE+DHL G+LF+D ++ ++ + ++ K Sbjct: 151 MNADGLLARCIQHEVDHLRGVLFVDRVTS--KEDLKTELKK 189 >gi|282882057|ref|ZP_06290698.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] gi|281298087|gb|EFA90542.1| peptide deformylase [Peptoniphilus lacrimalis 315-B] Length = 166 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ S+ +E N + L+D+M E M S DG+GLAA Q+G+L RL+V Sbjct: 1 MAIRNIRTDEDTILRKKSKTVENFNDRLKVLVDDMFETMDSADGVGLAAPQVGMLKRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D ++ + +IT + V +EGCLSIP + DVKR+ I V Y + + Sbjct: 61 VDDRDEENQHRFYLINP--VITRKEGSEVCREGCLSIPGKQGDVKRATDIDVTYNTLDGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + I LA +QHE+DHL+GIL+ D ++ R Sbjct: 119 EEKINCKDFLARIIQHEIDHLDGILYTDRAEKMYR 153 >gi|284054434|ref|ZP_06384644.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 187 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 88/148 (59%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++VID Sbjct: 17 LDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S + S +QEGCLSIP DV R + V + D N + + Sbjct: 77 EPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LL +QHE+DHL G+LF+D + Sbjct: 137 ILATELLCRAIQHEIDHLQGVLFVDRVD 164 >gi|154490274|ref|ZP_02030535.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] gi|154089166|gb|EDN88210.1| hypothetical protein PARMER_00506 [Parabacteroides merdae ATCC 43184] Length = 185 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 5/172 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+LR+ + + D+ L+ NM E MY+ DG+GLAA Q+G+ RL+VI Sbjct: 1 MILPVYLYGQPVLRKEAEEVPMDYPDLKQLVANMFETMYNADGVGLAAPQVGLSLRLLVI 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + INP + S++ +EGCLS+P V RSA + V+Y+D Sbjct: 61 DADVMGDDFPECKGFKRAMINPVFLEKSEEEVSMEEGCLSLPGVHEKVARSAKVRVKYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + + +G A +QHE +HL G +FID++S ++R + K++ +++ Sbjct: 121 EDLKEHEETVEGFAARVVQHECEHLEGHVFIDNISGIRRQLNKSKLNSIIKG 172 >gi|111019610|ref|YP_702582.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110819140|gb|ABG94424.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 188 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 6/171 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++I D L + + +S++ +D++ E + G GLAA Q+G + V Sbjct: 1 MAIRPILIAGDTRLTTPAVTVTAFDSELAAFVDDLHETNTAAHGAGLAANQVGDPRAIFV 60 Query: 61 IDLQDH---AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 DL D + + EGCLS+P R R+ + V +D Sbjct: 61 YDLIDDARRHRGHVINPVLETSPRPETMPDPDDLEGCLSVPGERYPTGRADWARVVGVDV 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD-MITKKMSKLVQ 167 + + + G LA CLQHE DHL G L++D L + R+ +KM K Q Sbjct: 121 DNKPISVEGTGYLARCLQHETDHLAGHLYLDRL--IGRNHRAARKMIKQRQ 169 >gi|238924698|ref|YP_002938214.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|259645181|sp|C4ZEV9|DEF_EUBR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238876373|gb|ACR76080.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|291526147|emb|CBK91734.1| peptide deformylase [Eubacterium rectale DSM 17629] gi|291527119|emb|CBK92705.1| peptide deformylase [Eubacterium rectale M104/1] Length = 158 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L +V R + ++ I+ LID+MLE MY +G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVEGDPVLGKVCREVTEVTPKIVTLIDDMLETMYEANGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+II + + + CLS+P V R ++ R+M + Sbjct: 61 IDVGEG-----PIVMINPEIIESDGEQTGDEG-CLSVPGKAGQVTRPNYVKARFMGEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA C+ HELDHL+G L+++ + Sbjct: 115 EYEIEGEELLARCICHELDHLDGHLYVEKVE 145 >gi|237736610|ref|ZP_04567091.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817] Length = 169 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 55/167 (32%), Positives = 93/167 (55%), Gaps = 4/167 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + + +LR V++ +E I+++I+ ++DNM+E M+ G+GLAA Q+G+ R+ V Sbjct: 1 MIYEIKKYGEAVLREVAQEVENIDNEILEILDNMVETMHEAKGVGLAAPQVGISKRMFVC 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D RK I P D ++EGCLS+P V+R I + Y++ + Sbjct: 61 DQGDGVVRKVINPIITPMTDKLMD----FEEGCLSVPGIYKKVQRPEKIKIDYLNEKGEK 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +G LA +QHE DHL+ +LF+D +S + + MI KK+ L + Sbjct: 117 VSEEVEGFLAIIMQHEFDHLDAVLFVDKISPMAKRMINKKLQMLKKE 163 >gi|163744871|ref|ZP_02152231.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] gi|161381689|gb|EDQ06098.1| N-formylmethionyl tRNA deformylase [Oceanibulbus indolifex HEL-45] Length = 165 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 83/155 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +PDP L + PIE+I +I L +MLE MY+ G GLA Q+G + RL V Sbjct: 1 MSMREVLRWPDPRLAEICAPIEEITPEIEQLAADMLETMYAAPGRGLAGPQVGAMLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D ++ +P+V INP ++ EGCLSIP D+ R + + + + N Sbjct: 61 MDAGWKENKSDPLVCINPMFQEIGEERVTNTEGCLSIPGISTDISRPSQVQMVWTGLNGG 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G A QHE+DHL+G++ DHL R Sbjct: 121 RYVQSFEGAAALIAQHEMDHLDGVVTFDHLDAETR 155 >gi|57238784|ref|YP_179920.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58578709|ref|YP_196921.1| peptide deformylase [Ehrlichia ruminantium str. Welgevonden] gi|58616771|ref|YP_195970.1| peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|57160863|emb|CAH57765.1| putative peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58416383|emb|CAI27496.1| Peptide deformylase [Ehrlichia ruminantium str. Gardel] gi|58417335|emb|CAI26539.1| Peptide deformylase [Ehrlichia ruminantium str. Welgevonden] Length = 181 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 12/178 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV- 59 M LV PD L S + ++ +I L+D+M EVM++ +GIGLAAVQ+G+ R+ Sbjct: 1 MSTLSLVTIPDHRLSLCSEEVTEVTQEIKKLVDDMFEVMHTNNGIGLAAVQVGIHKRIFV 60 Query: 60 -----------VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 I + P INPKI+ S + QEGCLS+PD V R Sbjct: 61 ADVPVDYKDHETIKTDGYKSHGGPYCMINPKIVDMSQEKVKMQEGCLSVPDCLEYVMRPK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 ++T++Y+D N II A G LA CL+HELDHLNGI+F+ +LS+ KRD+I +K+ K Sbjct: 121 YVTMQYLDYNGNKCIIKAQGWLARCLEHELDHLNGIVFLKYLSKFKRDLIVEKIRKRQ 178 >gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7] Length = 241 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + Sbjct: 66 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNAL 125 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 126 YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 185 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 186 KILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 229 >gi|254712281|ref|ZP_05174092.1| peptide deformylase [Brucella ceti M644/93/1] gi|254715352|ref|ZP_05177163.1| peptide deformylase [Brucella ceti M13/05/1] gi|261217080|ref|ZP_05931361.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261319950|ref|ZP_05959147.1| peptide deformylase-like protein [Brucella ceti M644/93/1] gi|260922169|gb|EEX88737.1| peptide deformylase-like protein [Brucella ceti M13/05/1] gi|261292640|gb|EEX96136.1| peptide deformylase-like protein [Brucella ceti M644/93/1] Length = 164 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++I P+I+ ++ +QEG +S+P V+R A I +RY D + Sbjct: 61 L---ELDRAAGPKIYIYPEIVWACEEKIRHQEGSVSMPGVVDKVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|88859726|ref|ZP_01134366.1| peptide deformylase [Pseudoalteromonas tunicata D2] gi|88818743|gb|EAR28558.1| peptide deformylase [Pseudoalteromonas tunicata D2] Length = 168 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 5/171 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M P++ DP L + + + + +LID++L+ +Y + +GIGLAA QIG ++ Sbjct: 1 MAVLPILTAGDPFLAVPATAVTDV-KLVESLIDDLLDTLYATDNGIGLAATQIGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL ++ + ++ + +EGCLS+P YRADV R + V +D + Sbjct: 60 VIDLSAERNQPL---VLINPVVVSGEAEEKGEEGCLSVPGYRADVVRYTHVVVEALDRSG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Q I +D LA +QHE+DHL G LFID+LS LKR++ KK+ K V+ + Sbjct: 117 QAVRIDSDDFLAIVMQHEIDHLKGTLFIDYLSPLKRNIALKKVKKCVKEAN 167 >gi|154252515|ref|YP_001413339.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] gi|154156465|gb|ABS63682.1| peptide deformylase [Parvibaculum lavamentivorans DS-1] Length = 207 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 13/176 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + P+LR ++RP+ ++ L+ +M+E M +G GLAA Q+ +R+V Sbjct: 1 MAIRKIARMGHPVLRGIARPVPDPTAPEVKALVRDMIETMIDANGAGLAAPQVYEPWRIV 60 Query: 60 VIDLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 V + H V INP++ +++ EGCLS+P R V R Sbjct: 61 VFQAPESRLPEGVDETEAFDHTAPLTVLINPEVEILTEEMEKGWEGCLSVPGLRGSVPRH 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + R N + A G A +QHE DHL+GIL+ + L + + Sbjct: 121 TELRYRGYGLNGELIERRARGFHARVIQHECDHLDGILYPQRMDDLAELIFESEAR 176 >gi|297195782|ref|ZP_06913180.1| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] gi|297152947|gb|EDY66111.2| peptide deformylase 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 190 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 74/151 (49%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + DP+L + + D+ L++++ MY+ G+GLAA Q+GV R+ V D Sbjct: 13 VRPMSLLADPVLHKPCETVTDFGPDLGRLVEDLFATMYAAQGVGLAANQVGVGSRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A +R V + + Sbjct: 73 CPDDEDVRHLGHVVNPRLVEADGVTVRGPEGCLSLPGLEAGTERFDRAVVEGVTWEGEPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + G A CLQHE DHL G+++ D L+ Sbjct: 133 RVEGTGFFARCLQHECDHLEGLVYADRLTPW 163 >gi|331091587|ref|ZP_08340423.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] gi|330403614|gb|EGG83170.1| peptide deformylase [Lachnospiraceae bacterium 2_1_46FAA] Length = 157 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + ++ I + LI++M + MY G+GLAA Q+G+L R+V Sbjct: 1 MAIREIRKIGDEVLTKKCKEVKTITPRTVELIEDMFDTMYDEMGVGLAASQVGILKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+II S + + + CLS+P V R + VR D + Q Sbjct: 61 IDVGEG-----PILLINPEIIETSGEQTGDEG-CLSVPGKAGQVTRPFYAKVRACDIDMQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +GLLA HE+DHL+G L++D + Sbjct: 115 PFEIEGEGLLARAFCHEIDHLDGHLYVDKVE 145 >gi|283797831|ref|ZP_06346984.1| peptide deformylase [Clostridium sp. M62/1] gi|291074519|gb|EFE11883.1| peptide deformylase [Clostridium sp. M62/1] gi|295091956|emb|CBK78063.1| peptide deformylase [Clostridium cf. saccharolyticum K10] Length = 159 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P++++ LI++M + MY +G+GLAAVQ+GV ++VV Sbjct: 1 MAIREIRTIGDEILRKECKPVKEMTPHTAELIEDMFDTMYEANGVGLAAVQVGVRKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + I + EGCLS+P V R ++ V+ ++ + Sbjct: 61 IDVEDGN-----QYVLINPEILETSGSQTGPEGCLSVPGKSGTVTRPDYVKVKALNEKME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ +GLLA + HE DHL G+L++D + Sbjct: 116 EFVLEGEGLLARAICHECDHLYGVLYVDKVE 146 >gi|209522380|ref|ZP_03270994.1| peptide deformylase [Burkholderia sp. H160] gi|209497186|gb|EDZ97427.1| peptide deformylase [Burkholderia sp. H160] Length = 177 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R++ P++ + ++ L+ +M E M++ +G GLAA QIGV ++V+ Sbjct: 1 MIHDILKMGDPRLLRIAEPVDHFDTPELHRLVADMFETMHAANGAGLAAPQIGVDLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGSNERYPDAPPVPETVLINPTITPVSQDMEESWEGCLSVPGLRGVVSRFSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQFGNPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSK 160 >gi|88855570|ref|ZP_01130234.1| polypeptide deformylase [marine actinobacterium PHSC20C1] gi|88815477|gb|EAR25335.1| polypeptide deformylase [marine actinobacterium PHSC20C1] Length = 163 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 5/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +F DP+LR V PI + LI +++E + GLAA QIGV R Sbjct: 1 MAVREIRLFGDPVLRSVCDPITVGDPHAAALIADLIESVQIPGRAGLAANQIGVGLRAFS 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ INP + S D + EGCLS+P + R F V +D + Q Sbjct: 61 YNIDGEVG-----YIINPVLAEVSGDPELVDEGCLSVPGFYFLRSRYPFARVTGVDLDGQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + +GL+A LQHE DHL+G L+I+ L + + + K Sbjct: 116 PVELSGEGLMAQALQHETDHLDGHLYIEGLDSETKREAMRAIRK 159 >gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243] gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243] Length = 183 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 61/162 (37%), Positives = 81/162 (50%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V P+PIL +V P + + + L M + MY DG GLAA Q+GV RLVVI Sbjct: 3 TVISIVQSPNPILNQVCDPCDLGDKSLKKLAKQMAKAMYKNDGCGLAAPQLGVAKRLVVI 62 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +NP+V +NP ++ D V EGCLS P + R F VRY D + + Sbjct: 63 DCDQEEGEQNPIVLVNPVLVDTQGDPVVAGEGCLSCPGITVPIARPPFARVRYFDLDGEE 122 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I D LL CLQHELDHL+GI + + R + Sbjct: 123 WEIEGDDLLGRCLQHELDHLDGITMFERCDPMARIEALRDYE 164 >gi|254519243|ref|ZP_05131299.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 147 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D LR+ + + +I + LI++M + MY DG+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIRQNGDEALRKKCKVVTEITPRTLKLIEDMADTMYEADGVGLAAPQVGILQRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + I + +EGCLS+P ADV+R ++ V+ ++ + Sbjct: 61 IDIYDDYGLR----VFINPEILEVSGSQLGEEGCLSVPGEVADVERPNYVKVKALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ A LLA + HE DHLNG LFID+L Sbjct: 117 EFVLEATELLARAILHENDHLNGTLFIDYLK 147 >gi|319949867|ref|ZP_08023877.1| polypeptide deformylase [Dietzia cinnamea P4] gi|319436469|gb|EFV91579.1| polypeptide deformylase [Dietzia cinnamea P4] Length = 223 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 22/185 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+VI DP L + P+ + +I +L+ ++ + M + +G+GLAA QIGV R+ V Sbjct: 1 MAVRPIVILGDPALHAPTEPVTESPEEIADLVRDLYDTMDAANGVGLAANQIGVRKRVFV 60 Query: 61 IDLQD----------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 D D V +I D EGCLS+P Sbjct: 61 YDCPDLDTEDGEGVSREEVEARGGWLNRRGCVINPVLETSEIPETMPDPEDDLEGCLSVP 120 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 R+ + V D + + + GL A CLQHE+ HL+G ++ DHL + Sbjct: 121 GVNFPRGRAWWARVTGTDEHGEPVSVEGYGLFARCLQHEVGHLDGFVYTDHLIGRNKKAA 180 Query: 159 TKKMS 163 + + Sbjct: 181 KRHIR 185 >gi|38234602|ref|NP_940369.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129] gi|38200866|emb|CAE50571.1| peptide deformylase [Corynebacterium diphtheriae] Length = 187 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+VI DP+L + P+ +++ +LI +M E M + G+GLAA Q+GV RL V Sbjct: 1 MIRPIVICGDPVLHNPTAPVSDP-AEVQDLIADMYETMEAARGVGLAANQVGVGLRLFVF 59 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG------CLSIPDYRADVKRSAFITVRYM 115 + D + INP + T ++ + CLS+P R+ + V + Sbjct: 60 NCPDDEGHFHRGCVINPVLETSEIPETMPADDGSDDEGCLSVPGEGFPTGRADWARVTGL 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + + G LA C QHE+ HL+G L+ D L + K + + Sbjct: 120 EADGTPVVYEGTGFLARCFQHEVGHLDGFLYTDTLIGRWKRQAKKAIKR 168 >gi|294339982|emb|CAZ88345.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp. 3As] Length = 177 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L RV++P+ K + ++ LI ++ E M + G+GLAA QIGV +V Sbjct: 1 MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I D EGCLS+P R V R I R Sbjct: 61 IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 MD A+G A +QHE DHL G L+ + R T ++ Sbjct: 121 MDPYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|237785573|ref|YP_002906278.1| peptide deformylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758485|gb|ACR17735.1| polypeptide deformylase [Corynebacterium kroppenstedtii DSM 44385] Length = 178 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + IF DP+L + + + + L+D+M+E M G GLAA Q+GVL R+ V Sbjct: 1 MSLRRIRIFGDPVLTTPAEQVTDFDEPLGILVDDMMETMDHYRGAGLAANQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP D+ EGCLS+P A+ +R ++V + Sbjct: 61 YNCGGRRG-----HIVNPVWKHEGDETQYGPEGCLSVPSIHANTRRWMNVSVTGQTVDGD 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ADG+LA C+QHE DHL+G++++ L R ++ Sbjct: 116 PVSFSADGILARCIQHETDHLDGVMYMRRLEPEIRKETMAQIR 158 >gi|299140626|ref|ZP_07033764.1| peptide deformylase [Prevotella oris C735] gi|298577592|gb|EFI49460.1| peptide deformylase [Prevotella oris C735] Length = 187 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E + +++GIGLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDITADYPQLKELIADMFETLTASNGIGLAAPQIGKDIRVVVI 60 Query: 62 D-------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D ++ + + + +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDYPEYKGLRKAFINAHILEFDEDSPKETIEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + DG LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWIDGFLARVMQHEFDHLEGKMFIDRIPPLRKQMIFSKLKAMMKGK 175 >gi|284989160|ref|YP_003407714.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284062405|gb|ADB73343.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 185 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 4 KPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+V + +P+L R P+ D+ L+ +M M + DG+GLAA QIGV R+ VID Sbjct: 12 RPIVTYGSNPVLHRPCAPVTAFGKDLRRLVLDMFASMEAADGVGLAANQIGVDARVFVID 71 Query: 63 LQDHAHRKNPMVFINPKIITFSDDF-----SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D +NP++ V EGCLS+P A++ R+ V +D Sbjct: 72 CPDADGEDVVGYVVNPELTVLEPREGEPAEEVTDEGCLSVPGPYAELPRAFRARVDGVDA 131 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + I A G+ A CLQHE+DHL+G +++D L R+ + + Sbjct: 132 DGAPVSIEATGMAARCLQHEVDHLDGTVYVDRLPGDLRERLLAE 175 >gi|157962208|ref|YP_001502242.1| peptide deformylase [Shewanella pealeana ATCC 700345] gi|157847208|gb|ABV87707.1| peptide deformylase [Shewanella pealeana ATCC 700345] Length = 163 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R + P+ I + ID+++E MY DGIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAVPVTDI-ESVQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+I+ ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSEE--RDQPMVLINPEIVESRGEYQG-EEGCLSIPGYRAKVNRHEGVKVSALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHLNG++F DHLS LK+ + KK+ K Sbjct: 117 KAFEIDTDEFLAIVLQHEMDHLNGVVFTDHLSMLKQQVALKKVKKYR 163 >gi|121604720|ref|YP_982049.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] gi|120593689|gb|ABM37128.1| peptide deformylase [Polaromonas naphthalenivorans CJ2] Length = 179 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L RV++P+ + ++ L+ +M M S DG GLAA QIGV ++V Sbjct: 1 MTIREILKMGDARLLRVAKPVTAFDTDELHVLVSDMFYTMQSVDGAGLAAPQIGVDLQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I S D EGCLS+P R V R + I Sbjct: 61 IFGSDQLNPRYPAAPVVPRTVLVNPVITPLSADEESDWEGCLSVPGLRGMVPRFSHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DHL G L+ + L Sbjct: 121 GFDQYGDPIDRTVDGFHARVVQHECDHLIGKLYPMRIRDL 160 >gi|284991544|ref|YP_003410098.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] gi|284064789|gb|ADB75727.1| peptide deformylase [Geodermatophilus obscurus DSM 43160] Length = 177 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ + DP+LR + P+ + ++ L+ ++ + M++ G GLAA QIGV R+ Sbjct: 1 MSVTPIRLLGDPVLRTPAAPVVDFDQELRRLVADLTDTMFAAGGAGLAAPQIGVGLRVFT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP++ ++ EGCLSIP Y D +R ++ D + + Sbjct: 61 WYVDGEVG-----HLVNPEVTPVGEETEEGPEGCLSIPGYTFDCRRHLYVAATGFDLHGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + LLA +QHE+DHL+G+LF+D L Sbjct: 116 PVRVEGSHLLARAVQHEVDHLDGVLFVDRLD 146 >gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328] gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328] Length = 187 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 88/148 (59%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ + +I+ +I L+ ML+ MYS DGIGLAA Q+GV +++VID Sbjct: 17 LDIHYLGDRVLRQPAKRVSRIDDEIRQLVREMLQTMYSADGIGLAAPQVGVHKQVIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S + S +QEGCLSIP DV R + V + D N + + Sbjct: 77 EPDNAATPPLVLINPTIKKSSRELSPFQEGCLSIPGVYMDVVRPEEVEVTFKDENGRPRS 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LL +QHE+DHL G+LF+D + Sbjct: 137 ILATELLCRAIQHEIDHLQGVLFVDRVD 164 >gi|114327146|ref|YP_744303.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] gi|114315320|gb|ABI61380.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1] Length = 209 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + P+ +I L +M+E M G+GLAA Q+ R+ Sbjct: 29 MSILKIARMGHPVLLRRADPVPDPTAPEIQRLALDMIETMIDAPGVGLAAPQVYQSLRMF 88 Query: 60 V--IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V + + +P V INP++ D+ + EGCLSIP +R +V R+ + R + Sbjct: 89 VFRVPVSRGGEEVSPTVLINPELEWVGDEIQMCWEGCLSIPGFRGEVPRAMRVRYRGIGL 148 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 + A G A +QHE DHL+GIL+ ++ L R +++ Sbjct: 149 DGAVIEREASGFHANVIQHEYDHLDGILYPMRMNDLGRLGFEEEI 193 >gi|127513031|ref|YP_001094228.1| peptide deformylase [Shewanella loihica PV-4] gi|126638326|gb|ABO23969.1| peptide deformylase [Shewanella loihica PV-4] Length = 163 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 102/167 (61%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P+E I + + ID+++E MY DGIGLAA Q+G + ++ Sbjct: 1 MPVLDILTIPDERLKRKAKPVEDI-AAVQGFIDDLIETMYHTDDGIGLAATQVGSEHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+ + S + +EGCLSIP YRA V R + V+ ++ Sbjct: 60 VIDLSED--RDQPMVVINPEFVERSGEIVG-EEGCLSIPGYRAKVTRFEKVKVKALNREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I +D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 EAFEIESDDFLAIVLQHEMDHLDGKVFIEHLSPLKQQIALKKVKKYR 163 >gi|77920127|ref|YP_357942.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] gi|77546210|gb|ABA89772.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380] Length = 167 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 97/167 (58%), Gaps = 4/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M K ++++P P L+ + P+ + + ++ +LI ++++ M + +G+AA QIG+ R+V Sbjct: 1 MAVKDILLYPHPALKEICTPVTQCDENVDSLIQDLIDTMVAAGHSVGVAAPQIGITRRVV 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D+ + + I + + +EGC+S+PDY +V R+ + V+Y+D Sbjct: 61 VVDVSHSKLGRKENHGLIVMINPEILEQEGRTASREGCMSVPDYTGNVTRAESVVVQYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + Q+I A G A LQHE+DHL+G+LF+D +S LK D+ +K Sbjct: 121 RSGNKQVIRATGFEAIALQHEIDHLDGLLFLDRVSSLKTDLFRRKKR 167 >gi|313113575|ref|ZP_07799163.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624090|gb|EFQ07457.1| peptide deformylase [Faecalibacterium cf. prausnitzii KLE1255] Length = 178 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL +V RP+ + + L+D+M E M + DG+GLA Q+G+L RL V Sbjct: 1 MAIRNIVKEGDPILNKVCRPVTTFDDRLATLLDDMHETMIAADGVGLAGPQVGMLRRLFV 60 Query: 61 IDLQDHAHRKNP-------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + P + F+NP+I+ S++ EGCLS P + V R A + VR Sbjct: 61 VWDTTDAPEEIPEDYEYKFIDFVNPEILAVSEEEETAYEGCLSFPGHNGAVTRPAAVKVR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + + A+ LL C+QHE DHL+GI + Sbjct: 121 AQDRHGEWFELEAENLLGRCIQHENDHLDGITIMQ 155 >gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A] gi|158512738|sp|A2BZN6|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str. NATL1A] Length = 202 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VIDL Sbjct: 31 LKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + Sbjct: 91 NFEDPNSPPMVFINPEIISSSATVDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGL+A C+QHE+DHLNG+ F+D ++ +++ K + + Sbjct: 151 MNADGLMARCIQHEIDHLNGVCFVDKVTD------EEELKKQLNENN 191 >gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9] gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9] Length = 218 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 65/143 (45%), Positives = 89/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 50 LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 109 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P+V INP I S + V QEGCLSIP +VKR + + Y D + Q + AD Sbjct: 110 EIPPLVLINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 169 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+ HE+DHLNG++F+D + Sbjct: 170 LLARCILHEMDHLNGVVFVDRVE 192 >gi|17985009|gb|AAL54054.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M] Length = 203 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 40 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 99 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 100 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 156 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 157 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 203 >gi|121594637|ref|YP_986533.1| peptide deformylase [Acidovorax sp. JS42] gi|222110774|ref|YP_002553038.1| peptide deformylase [Acidovorax ebreus TPSY] gi|120606717|gb|ABM42457.1| peptide deformylase [Acidovorax sp. JS42] gi|221730218|gb|ACM33038.1| peptide deformylase [Acidovorax ebreus TPSY] Length = 179 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + + L+++M E M + +G GLAA QIG +++V Sbjct: 1 MTIRTILKMGDPRLLRVAQPVTAFDTPALHQLVNDMRETMQAVNGAGLAAPQIGEDWQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P V INP I D EGCLS+P R V R A I R Sbjct: 61 IFGSGERNPRYPDRPIVPPTVLINPVITPLGADEEDDWEGCLSVPGLRGKVPRFARIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +D A+G A +QHE DHL G L+ + Sbjct: 121 GVDLLGAPIDRVAEGFHARVVQHECDHLIGKLYPMRVRDF 160 >gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii CS-505] Length = 190 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 64/143 (44%), Positives = 89/143 (62%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ I KI+ ++ LI +ML+ MYS DGIGLAA Q+GV +LVVID Sbjct: 22 LGDRVLRQPAKRITKIDDELRQLIRDMLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 P++ INP I S + V QEGCLSIP +VKR + + Y D + Q + AD Sbjct: 82 EMPPLILINPVIKQVSSELCVAQEGCLSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADN 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LLA C+ HE+DHLNG++F+D + Sbjct: 142 LLARCILHEMDHLNGVVFVDRVE 164 >gi|224825207|ref|ZP_03698313.1| peptide deformylase [Lutiella nitroferrum 2002] gi|224602878|gb|EEG09055.1| peptide deformylase [Lutiella nitroferrum 2002] Length = 170 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 6/157 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +K+P + P+LR+ + + + + + L+ +M + Y+ +G+GLAA QIGV R++V Sbjct: 1 MKRPFLPQEHPMLRQHAAAVTEFDTPALHELVQDMFDTQYAGNGVGLAAPQIGVPLRVIV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A P V INP+I ++ EGC S+P R V R I R Sbjct: 61 FAYGGGERDPGAPAIPPTVLINPEIRPDAEHIEEDWEGCFSVPGQRGRVPRWQAIRYRAQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D + A+G A +QHE+DHLNG LFIDHL Sbjct: 121 DIQGRLVEGRAEGFHARIIQHEVDHLNGTLFIDHLPP 157 >gi|32491245|ref|NP_871499.1| hypothetical protein WGLp496 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30172741|sp|Q8D258|DEF_WIGBR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|25166452|dbj|BAC24642.1| def [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 152 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 3/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P+ LR+++ I I+S+I +LI NMLE MY +GIGLAA Q+ V R++V Sbjct: 1 MSVLSILNYPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + P++ INP I ++EGCLSIP A V RS + ++ ++C + Sbjct: 61 IDISKN--KNKPLILINPVFINKCGA-QTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ + GLLATC+QHE+DHL G LFID++ LK Sbjct: 118 EFLLKSKGLLATCIQHEMDHLIGKLFIDYIKPLK 151 >gi|253987938|ref|YP_003039294.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica] Length = 168 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 5/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + + I LID+ML+ MY + +GIGLAA Q+G ++ Sbjct: 1 MATLEILTIPDERLRQKCVEVTNV-EAIQGLIDDMLDTMYSTDNGIGLAAPQVGRKEAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ A R P++ +NPKI+ + CLS+P Y ADV+R + V ++ + Sbjct: 60 IIDI--SATRDEPLILVNPKIVEKDRSVIGQEG-CLSVPGYYADVERFEKVKVEALNRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + + ++ LA +QHE+DHL+G +FID+LS LKR M Sbjct: 117 ETITVESEDFLAIVMQHEIDHLHGKIFIDYLSPLKRQMAL 156 >gi|256394158|ref|YP_003115722.1| peptide deformylase [Catenulispora acidiphila DSM 44928] gi|256360384|gb|ACU73881.1| peptide deformylase [Catenulispora acidiphila DSM 44928] Length = 225 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + +L R R + + ++++ L+D+M MY G+GLAA Q+GV R+ V D D Sbjct: 40 VGEEVLHRPCREVAEFGTAELLQLVDDMFLTMYVAQGVGLAANQVGVDLRVFVYDCVDDD 99 Query: 68 HRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ +NPK+ + QEGCLS+P ++ R + +D + + + Sbjct: 100 GARHVGHIVNPKLDRTPEGGQRRLVEAQEGCLSVPGPTRELPRYDHAVLHGVDVHGEPLV 159 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + +G A CLQHE DHL G L+ID +++ R + ++M+++ Sbjct: 160 LEGEGYFARCLQHETDHLEGTLYIDRMNKKTRRGVLEEMAEVA 202 >gi|254436758|ref|ZP_05050252.1| peptide deformylase [Octadecabacter antarcticus 307] gi|198252204|gb|EDY76518.1| peptide deformylase [Octadecabacter antarcticus 307] Length = 165 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + +P ILR + + +I DI L D M++ M + G+GLAA Q+GV RL V Sbjct: 1 MPRRQFIPWPAKILRTPAAEVPEITDDICALWDEMIDAMDAMPGVGLAAPQLGVSLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + NP I+ S + +++E ++ A ++R +TVR+M+ Sbjct: 61 VDASDKRGQAI--RMANPIILHASHELRLHEEASPNLVGMSASLERPRAVTVRFMNEAGM 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL+G ++ D LSR KRDM+ KK KL Sbjct: 119 YDRQDFVGLWATSVQHQIDHLDGKMYFDRLSRTKRDMLLKKARKL 163 >gi|73541574|ref|YP_296094.1| peptide deformylase [Ralstonia eutropha JMP134] gi|72118987|gb|AAZ61250.1| Formylmethionine deformylase [Ralstonia eutropha JMP134] Length = 177 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L + +RP+E+ N ++ LI++M + M +G GLAA QIGV ++V+ Sbjct: 1 MIREILKMGDARLLQQARPVERFNTPELRTLIEDMFDTMDHANGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A + V INP + SDD EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPKVPKTVLINPMLEMLSDDLEDGWEGCLSVPGLRGVVPRHTRLRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL GIL+ + R Sbjct: 121 DLMGGSIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTR 160 >gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300 [Chlorella variabilis] Length = 169 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 83/148 (56%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +PDP LR + I + + L + M EVMY DG+GLAA Q+GV RL+V + Sbjct: 13 VLRYPDPRLRAPNARIGAFDDSLRRLAEEMFEVMYEDDGVGLAAPQVGVNVRLMVFNEAG 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V +NP+II ++++EGCLS P+ ADV+R + + V+ D + + + Sbjct: 73 EKGAGDEIVLVNPQIINQGKARNMFEEGCLSFPNIYADVERPSKVKVKAQDLSGKKFTVS 132 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRL 153 G A QHE DHL+G LF D ++ Sbjct: 133 LIGFPARIFQHEYDHLDGRLFHDRMAPE 160 >gi|189467964|ref|ZP_03016749.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] gi|189436228|gb|EDV05213.1| hypothetical protein BACINT_04358 [Bacteroides intestinalis DSM 17393] Length = 186 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ ++ + +LR+ IE+ +I +I+ M + + DG GLAA QI + +L ++ Sbjct: 1 MIKPITVYGNSVLRKECEDIEQNYPNIQEVIETMWQTLRDADGCGLAAPQINLPIKLFIV 60 Query: 62 DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + +D FIN KII +S+ EGCLSIPD +V R Sbjct: 61 NSKDTYTYMSAKEREHFFVEEDCGIEETFINAKIIAYSEKVWTAGEGCLSIPDLYEEVTR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +T+RY D + Q G A +QHE +H G L+ID LS L++ +I K+ +++ Sbjct: 121 PWSVTIRYQDNEFKEQNRTYYGYTARIIQHEFEHTQGKLYIDRLSPLRKQLIKNKLMRII 180 Query: 167 QL 168 + Sbjct: 181 KG 182 >gi|310659160|ref|YP_003936881.1| defa [Clostridium sticklandii DSM 519] gi|308825938|emb|CBH21976.1| DefA [Clostridium sticklandii] Length = 152 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ SR ++KIN I+ L+++M++ MY DG+GLAA Q+GVL R+VV Sbjct: 1 MAIRIIRTDGDEVLRKKSRAVDKINDKILELVEDMIDTMYEADGVGLAAPQVGVLKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+I+ S + + + CLS+P V R ++ + D + Sbjct: 61 IDVGDG-----PIVMINPEILESSGEQTDDEG-CLSLPGKFGCVTRPYYVKAKAYDTDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ A+ L A + HE+DHL+GILF D + Sbjct: 115 EFVVEAEELFARAICHEIDHLDGILFKDKVE 145 >gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193] gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193] Length = 168 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 2/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L + P+ + D+ LI +M E MY+ G GLAA Q+GVL RL V Sbjct: 1 MALLPILQWPDAGLSTLCTPVGE--EDLTRLIADMFETMYAAPGRGLAAPQVGVLKRLFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P+V INP+ ++ D EGCLSIP V R +++R+ D + Sbjct: 59 MDATWKEAPGTPLVMINPEFLSVGADLESGDEGCLSIPGVLTSVPRPKTVSLRWQDQDRN 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 DG A C+QHE DHL G++ ++ L+ R ++ R Sbjct: 119 WTSGSFDGFAARCIQHEYDHLEGLVTLNRLTPAARSEAEATYQNRLETR 167 >gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC] gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC] Length = 191 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 11 MIRDLEYYDSPILRKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 70 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 71 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 130 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 131 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 183 >gi|296135817|ref|YP_003643059.1| peptide deformylase [Thiomonas intermedia K12] gi|295795939|gb|ADG30729.1| peptide deformylase [Thiomonas intermedia K12] Length = 177 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L RV++P+ K + ++ LI ++ E M + G+GLAA QIGV +V Sbjct: 1 MTLHTILRMGDPRLLRVAKPVVKADTPELHALIADLFETMQAAGGVGLAAPQIGVDLAVV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+I D EGCLS+P R V R I R Sbjct: 61 IFGFSQSARYPEAPAVPQTVLINPEISVLDDAEEEGWEGCLSVPGLRGWVPRFRRIRYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 MD A+G A +QHE DHL G L+ + R T ++ Sbjct: 121 MDAYGNPIDREAEGFHARVVQHECDHLIGKLYPMRIRDFSRFGFTDEL 168 >gi|118443183|ref|YP_878318.1| peptide deformylase [Clostridium novyi NT] gi|118133639|gb|ABK60683.1| peptide deformylase [Clostridium novyi NT] Length = 150 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ R +E+IN I+ LI++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MALRNIRVEEDSILRKKCREVEEINDRILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + Y+ CLS+P + V R +T + ++ + Sbjct: 61 IDVGEG-----PITLINPEIIESEGSQTDYEG-CLSLPGKQGKVTRPYKVTAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I +GLLA + HELDHL+G LFID + Sbjct: 115 PVEIKGEGLLARAICHELDHLDGTLFIDKV 144 >gi|297572267|ref|YP_003698041.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] gi|296932614|gb|ADH93422.1| peptide deformylase [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ P+L + S + + + L +M E + G+GLAA QIG+ + V Sbjct: 1 MLYPIHVYGSPVLHKTSAKVTVFDEKLATLAQDMFETCEAAPGVGLAAPQIGLDLAMFVW 60 Query: 62 DLQDHAHRKNPMVFINPK-----IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 H+ + + +EGCLS P Y+ ++RS +R D Sbjct: 61 MYDGPEHKGPQRGVAVNPTLLIEPVDVFEPGPADEEGCLSFPGYQYGLRRSPRAVLRAQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A G A LQHE DHL G +++D L+ Sbjct: 121 EKGEWYDLEATGWFARILQHEYDHLKGRIYVDRLT 155 >gi|295399762|ref|ZP_06809743.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978165|gb|EFG53762.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 157 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M + M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILEKKCEPVKRFDRQLIQLLNDMYDTMIDADGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + + I + + EGCLS P A+VKR+ ++ VR D + Sbjct: 61 VDVGDEHGR----IELINPRIMEARGEQIGPEGCLSFPGLFAEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA LQHE+DHLNG+LF + Sbjct: 117 PFTLKATGFLARALQHEIDHLNGMLFTSKV 146 >gi|254393357|ref|ZP_05008503.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294811339|ref|ZP_06769982.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|326439928|ref|ZP_08214662.1| polypeptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|197706990|gb|EDY52802.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064] gi|294323938|gb|EFG05581.1| Peptide deformylase [Streptomyces clavuligerus ATCC 27064] Length = 186 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 74/148 (50%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL ++ +P+L + + L++++ MY+ +G+GLAA Q+GV R+ V D Sbjct: 13 VRPLSLYGNPVLHTPCETVTDFGPALGKLVEDLFATMYARNGVGLAANQMGVGLRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ EGCLS+P A V+R V D + Sbjct: 73 CPDDDEVRHLGHIVNPRLVAADGVEVRGPEGCLSLPGLEAPVERYDRAVVEGQDSDGGPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHL 150 + G A CLQHE DHL+G ++ D L Sbjct: 133 RVEGTGFFARCLQHETDHLDGSVYADRL 160 >gi|325662245|ref|ZP_08150860.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|331086046|ref|ZP_08335129.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471497|gb|EGC74718.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|330406969|gb|EGG86474.1| peptide deformylase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 156 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + +EK+ LID+M + MY G+GLAA Q+GVL R+V Sbjct: 1 MAIRKIREMGDDVLTKVCKEVEKVTPRTKVLIDDMFDTMYDAMGVGLAAPQVGVLKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I + +EGCLS+P V R ++ VR D + + Sbjct: 61 IDVGEG------PILLINPEIIETSGEQTGEEGCLSVPGKSGVVTRPNYVKVRAFDEDMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ++ +GLLA HE+DHL+G L+++ + DM ++ Sbjct: 115 EIVLEGEGLLARAFCHEIDHLDGHLYVEKVEGELEDMYYEE 155 >gi|320012174|gb|ADW07024.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331] Length = 169 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 66/144 (45%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + P L + + L+++M MY+ +G+GLAA QIGV R+ V D D Sbjct: 3 LLGAPALHSPCDDVTDFGPSLARLVEDMFATMYAANGVGLAANQIGVPLRVFVYDCPDDD 62 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 ++ +NP ++ D EGCLS+P A R V + I Sbjct: 63 EVRHLGHLVNPVLVEADGDTVRGPEGCLSLPGIEAGTPRFDRAVVEGRTVAGEPVRITGT 122 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 G A CLQHE DHL+G ++ D L+ Sbjct: 123 GWFARCLQHECDHLDGRVYTDRLT 146 >gi|304440681|ref|ZP_07400565.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370868|gb|EFM24490.1| peptide deformylase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 160 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR++S+ + IN + LI +M E M ++G+GLAA Q+G+L R++ Sbjct: 1 MAIRNIRTDEDPILRKISKEVNDINDRMKTLISDMFETMDYSNGVGLAAPQVGILRRIIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D QD I D V EGCLS+P + V R+ I V YMD N + Sbjct: 61 LDDQDGLRGA-----FINPKIIEKDGEQVGPEGCLSVPGKQGTVNRANHIVVTYMDENGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+G A QHE+DHLNGIL+ D Sbjct: 116 EKTLEAEGFTARIFQHEIDHLNGILYTD 143 >gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580] gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580] Length = 173 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 64/169 (37%), Positives = 88/169 (52%), Gaps = 7/169 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + LR+ S+P+E I+ + LI M M +GIGLAA QIG RL ++ + Sbjct: 2 KVLYLGEETLRQPSKPVEHIDEALHELIREMFITMDEDNGIGLAAPQIGKNVRLFIVKID 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R I Y+EGCLSIP ADV R +TV+Y D N + + I Sbjct: 62 DGIERVFINPLIVGTSEKQCS----YEEGCLSIPKMFADVVRPEAVTVQYQDMNGRRRTI 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---SKLVQLRD 170 A GLLA +QHE DHL G+LFID LS +RD + K + + R+ Sbjct: 118 EATGLLARVIQHEYDHLEGVLFIDRLSEKERDSLVAKFTQQQERKKQRE 166 >gi|317503055|ref|ZP_07961134.1| peptide deformylase [Prevotella salivae DSM 15606] gi|315665828|gb|EFV05416.1| peptide deformylase [Prevotella salivae DSM 15606] Length = 187 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 7/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ P+LR+V++ I + LI +M E M +++G+GLAA QIG R+VVI Sbjct: 1 MILPIYIYGQPVLRKVAQDISPDYPQLKELISDMFESMTASNGVGLAAPQIGKDIRVVVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 DL + I +EGCLS+P V R I V+Y Sbjct: 61 DLDVLSDDFPEYKGFRKAFINAHVLEVDDDSPKETLEEGCLSLPGLSEKVTRPTRIHVKY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + + +G LA +QHE DHL G +FID + L++ MI K+ +++ + Sbjct: 121 QDEDFVEHDEWVEGYLARVMQHEFDHLEGKMFIDRIPPLRKQMIYSKLKAMLKGK 175 >gi|254695522|ref|ZP_05157350.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya] gi|261215912|ref|ZP_05930193.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] gi|260917519|gb|EEX84380.1| polypeptide deformylase-like protein [Brucella abortus bv. 3 str. Tulya] Length = 164 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +Q G +S+P +V+R A I +RY D + Sbjct: 61 L---ELDRAAGPKIYINPEIVWACEEKIRHQVGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|121533703|ref|ZP_01665530.1| peptide deformylase [Thermosinus carboxydivorans Nor1] gi|121307694|gb|EAX48609.1| peptide deformylase [Thermosinus carboxydivorans Nor1] Length = 154 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + D +L+ + P+ KI+ + L+D+M + MY+ +G+GLAA Q+GV R++V Sbjct: 1 MSVLEIKKAGDKVLKEKAAPVGKIDRKVKQLLDDMAQTMYAAEGVGLAAPQVGVSLRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +I ++ EGCLS+P +V+R A + V ++ + + Sbjct: 61 VDVGDGLIE------LINPVIVAAEGSETNTEGCLSVPGVYGEVERYAQVVVEGLERSGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I GLLA LQHE+DHL+G+LFI+ L + Sbjct: 115 KVRITGTGLLARALQHEIDHLDGVLFIEKAKTLYK 149 >gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168] Length = 187 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 8/164 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + +LRR S P+ ++ +I L +M ++M G+GLAA Q+GVL RL VI Sbjct: 2 KILYLGEQLLRRKSEPVNEVTDEIRRLTQDMFQLMDEAQGVGLAAPQVGVLKRLFVITAD 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R FINP+II S + Y+EGCLSIP + R A +TV+ ++ + + + Sbjct: 62 DGVRRV----FINPQIIATSSETCDYEEGCLSIPQIYEHITRPAKVTVQAINEHGKPFTL 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSK 164 ADG LA +QHE DHL+GIL+ID R D KK + Sbjct: 118 EADGFLARIIQHENDHLDGILYIDRGDPDFRAKTIDSFEKKAER 161 >gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A] gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A] Length = 183 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 59/150 (39%), Positives = 90/150 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D LR+ ++ + KI+ I L +ML+ MYS++GIGLA+ Q+G+ +L+VI Sbjct: 11 SLLDIHYLGDKDLRKSAKRVSKIDDSIRELARDMLQTMYSSNGIGLASTQVGIHKQLIVI 70 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + P++ INPKI +S + V +EGCLSIP DV R I V + + N + Sbjct: 71 DCEPELSTNAPLILINPKINYYSQELCVMEEGCLSIPGVYFDVIRPEMIQVSFKNENGRP 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 I A LLA +QHE+DHLNG++F+D ++ Sbjct: 131 CQISATDLLARVIQHEIDHLNGVMFVDRVT 160 >gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271] gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271] Length = 156 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIDDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLQGVLFTSKVTR 148 >gi|227502026|ref|ZP_03932075.1| peptide deformylase [Corynebacterium accolens ATCC 49725] gi|227077310|gb|EEI15273.1| peptide deformylase [Corynebacterium accolens ATCC 49725] Length = 207 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D N + G A CLQHE HL+G ++ D L + K Sbjct: 121 GFPTGRADWARVTGKDENGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180 Query: 161 KMSK 164 + + Sbjct: 181 AIKR 184 >gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901] Length = 240 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 82/150 (54%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P LR + P+E + ++ L M ++MY T G GLAA Q+GV YR++V + Sbjct: 68 IAKYPAKCLRAKNAPVETFDKNLERLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 127 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + +V NP+I+ FS + +++EGCLS P ADV+R + + + + + Sbjct: 128 EPGQGREVVLCNPEIVKFSKEKDLFEEGCLSFPKMYADVERPIGVQIEAQNLKGKKFKMT 187 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G A QHE DHL+G+L+ D +S R Sbjct: 188 LEGFEARVFQHEYDHLDGVLYHDRMSPEVR 217 >gi|114047714|ref|YP_738264.1| peptide deformylase [Shewanella sp. MR-7] gi|113889156|gb|ABI43207.1| peptide deformylase [Shewanella sp. MR-7] Length = 163 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY DGIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL ++ R P+V INP+I+ S ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSEN--RDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVSRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163 >gi|113970479|ref|YP_734272.1| peptide deformylase [Shewanella sp. MR-4] gi|113885163|gb|ABI39215.1| peptide deformylase [Shewanella sp. MR-4] Length = 163 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY DGIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL ++ R P+V INP+I+ S ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSEN--RDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVSRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163 >gi|94310371|ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34] gi|93354223|gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34] Length = 177 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L + +RP+ + N ++ LID+M + M +G GLAA QIGV ++V+ Sbjct: 1 MIRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+ A +QHE DHL G+L+ + R Sbjct: 121 DMMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTR 160 >gi|227824654|ref|ZP_03989486.1| peptide deformylase [Acidaminococcus sp. D21] gi|226905153|gb|EEH91071.1| peptide deformylase [Acidaminococcus sp. D21] Length = 164 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 7/158 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V PILR + + + + + + M E MY+ +G GLAA QIG+ R++V Sbjct: 9 MSLLPIVKVGAPILREKAEAVTRFDKKLEKTLKAMAESMYANNGCGLAAPQIGLSKRMIV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D A + +++ + EGCLS+ DY +VKR+A +TVR+ D Sbjct: 69 IDADDGAGIR----EFVNPVLSEFKGEEIDTEGCLSVDDYEGEVKRAAEVTVRFQDRKGG 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH---LSRLKR 155 H + A GLLA LQHE DHL+GILFID LS ++ Sbjct: 125 HWRLTASGLLARALQHECDHLDGILFIDRALSLSPKRK 162 >gi|118581913|ref|YP_903163.1| peptide deformylase [Pelobacter propionicus DSM 2379] gi|118504623|gb|ABL01106.1| peptide deformylase [Pelobacter propionicus DSM 2379] Length = 168 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 93/165 (56%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M P++ +P P+L+++ + I+ +I LI ++L+ M + +G+AA QIGV R Sbjct: 1 MAIHPILRYPHPLLKKICHEVTGIDREIHALIQDLLDTMRAGPGSVGVAAPQIGVTLRAC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D+ + + + + I +V +EGC+S+PDY DV+RS + V +++ Sbjct: 61 VVDVSNSRNGRENNHGLLRMINPRIIARSGSAVMREGCMSVPDYTGDVERSTELRVSFLE 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + I A G A LQHE+DHL+GILF+D + +K + +K Sbjct: 121 PEGELREITASGFEAVALQHEMDHLDGILFLDRIVSVKTGLFRRK 165 >gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514] gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514] Length = 191 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 16/180 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ + P+LR+ + ++ S+I I +M E MY + GIGLAA Q+ ++ VI Sbjct: 1 MSLKVIKYGHPVLRKKGEKVTRVTSEIKQFIKDMFETMYESRGIGLAAQQVARAVQITVI 60 Query: 62 DLQD---------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D++ + P+V INP++ + + CLS P+ A++ R Sbjct: 61 DVRGITDRPSTLELNGKPASVEKFMPLVLINPEVKPVGPKVAGTEG-CLSFPEIFAEITR 119 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + V M+ N + A GLLA +QHE DHLNGILFID + + + ++ +L Sbjct: 120 PETVDVVAMNENGERIEFRAGGLLARAVQHETDHLNGILFIDRMDTETKQELKPELEELQ 179 >gi|284031594|ref|YP_003381525.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810887|gb|ADB32726.1| peptide deformylase [Kribbella flavida DSM 17836] Length = 201 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ + + ++ RV++P+ D+ L+ +M+ M + +G+GLAA Q+GV +L V Sbjct: 9 SVLPITRWGEDVMHRVNQPVTDFGDDLHKLVADMVATMNAAEGVGLAANQVGVDLQLFVF 68 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ V NPK +EGCLS+P R + V +D + Sbjct: 69 DCPDRDGVRHQGVVCNPKLELPEGKDRHLDEGEEGCLSLPGAFTKCARPDYAKVTGVDEH 128 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +GLLA CLQHE DH G++F D LSR + + + +L Sbjct: 129 GNPVSYEGNGLLARCLQHETDHTQGMVFGDRLSRKYKKRLFAEAEELA 176 >gi|226361306|ref|YP_002779084.1| peptide deformylase [Rhodococcus opacus B4] gi|254767598|sp|C1B0D9|DEF_RHOOB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|226239791|dbj|BAH50139.1| peptide deformylase [Rhodococcus opacus B4] Length = 196 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + + +++ LI +M + M + +G+GLAA Q+G+ RL V Sbjct: 1 MAILPIRIVGDPVLHEPTETVSESPAELSELIADMYDTMDAANGVGLAANQVGIPLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------EGCLSIPDYRADVKRSAFIT 111 D D P + + + EGCLS+P + R+ + Sbjct: 61 YDCPDVDETGKPFRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D + I A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGTDADGNAVEIEGRDFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173 >gi|187778895|ref|ZP_02995368.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] gi|187772520|gb|EDU36322.1| hypothetical protein CLOSPO_02490 [Clostridium sporogenes ATCC 15579] Length = 147 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR IEKI+ I+ L+++M E MYS +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNIRKYGDELLRKKSRKIEKIDDRILTLLEDMAETMYSAEGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLS+P + +V+R + V+ ++ + Sbjct: 61 IDVGEGLIKLINPEIIETEGSQKDV------EGCLSVPGEQGEVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + LLA HE+DHL+G+LF+D + Sbjct: 115 QIVLEGEELLARAFCHEIDHLDGVLFVDKV 144 >gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47] Length = 166 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I+ D ILR+ S+ +EK + + L+D+M + MY +GIGLAA Q+GVL R VV Sbjct: 1 MALRKIKIYEDEILRKRSKIVEKFDQRLHQLLDDMKDTMYEANGIGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + A + EGCLS+P+ +V+R + V D Sbjct: 61 IDIGEGAIELVNPQIEYSEGSVVDV------EGCLSVPNVWGEVERPQKVVVNAQDRFGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+GLLA + HE+DHL+GILF+D + R Sbjct: 115 EFRLEAEGLLARAVCHEIDHLDGILFVDKVIRF 147 >gi|291450059|ref|ZP_06589449.1| polypeptide deformylase [Streptomyces albus J1074] gi|291353008|gb|EFE79910.1| polypeptide deformylase [Streptomyces albus J1074] Length = 215 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 45 VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 104 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 105 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 164 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 165 TVHGTGFFARCLQHESDHLDGTLYVD 190 >gi|239978163|ref|ZP_04700687.1| polypeptide deformylase [Streptomyces albus J1074] Length = 183 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL + DP+L + + L++++ MY+ G+GLAA QIGV R+ V D Sbjct: 13 VRPLALLGDPVLAAPCAEVTDFGPALERLVEDLFATMYAARGVGLAANQIGVPLRVFVHD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A +R V +D + + Sbjct: 73 CPDDEDRRHLGHLVNPRLVEADGVVVRGPEGCLSLPGLEAGTERYDHAVVEGVDLRGEPR 132 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 ++ G A CLQHE DHL+G L++D Sbjct: 133 TVHGTGFFARCLQHESDHLDGTLYVD 158 >gi|74316798|ref|YP_314538.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259] gi|74056293|gb|AAZ96733.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC 25259] Length = 177 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L +R +E+ +++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 1 MAVREVLKMGDPRLLAPARAVERFATAELAQLVADMHDTMRALNGAGLAAPQIGVSLQVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP + SD EGCLS+P R V R I R Sbjct: 61 IFEVNANPRYPDAAEVPLTVLVNPVVTPLSDATEEGWEGCLSVPGMRGLVPRHGEIHYRG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D + G A +QHE+DHLNGIL+ + L+ Sbjct: 121 FDAAGRALERRVSGFHARVVQHEVDHLNGILYPMRIPDLR 160 >gi|218132889|ref|ZP_03461693.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] gi|217991762|gb|EEC57766.1| hypothetical protein BACPEC_00750 [Bacteroides pectinophilus ATCC 43243] Length = 159 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 9/154 (5%) Query: 1 MVKKPLV---IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + + D ILR+ ++ + ++ I LID+M + MY +G GLAA Q+G+ R Sbjct: 1 MALRNIRVLGQDGDEILRKTAKEVTEMTPKIRELIDDMFDTMYEANGCGLAAPQVGIRKR 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +VVID D P+V INP I+ S + + + CLS+P V R + V+ D Sbjct: 61 IVVIDCGDD-----PIVLINPVILETSGEQTGSEG-CLSVPGKCGTVTRPNYAKVKAFDE 114 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ + LLA CL HE+DHL+GI+++D + Sbjct: 115 DMNEYIVEGEELLARCLCHEIDHLDGIMYVDKVE 148 >gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142] gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 187 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 87/148 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + D +LR+ ++ I K++ + L ML+ MYS+ GIGLAA Q+ + +L+VID Sbjct: 17 LDIHVLGDRVLRQPAKRIAKVDDSVRQLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INPKI S + V +EGCLSIP DV R I V + D + + Sbjct: 77 EPDNPANPPLILINPKITRVSQELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LLA +QHE+DHLNG++F+D + Sbjct: 137 IQATDLLARVIQHEMDHLNGVMFVDRVD 164 >gi|300855374|ref|YP_003780358.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435489|gb|ADK15256.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 156 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D +LR+VSR ++ I+ + + ++ ++ + +Y++ G+GL+A QIG+L R++ Sbjct: 1 MAVREILKFGDKLLRKVSRKVKNIDEETLGIVQDLKDTLYASSGVGLSAPQIGILKRIIF 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL P+V INPKI+ + CLS + V R + V D N Sbjct: 61 IDLGKENTD--PVVLINPKIVKKMGRNEGPEG-CLSYNGHEGIVVRPKKVIVVGEDINGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+GL A HE+DHL+G+L+ D ++ + Sbjct: 118 EVRYNAEGLFARAFCHEIDHLDGVLYTDKAKKVYK 152 >gi|297617045|ref|YP_003702204.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] gi|297144882|gb|ADI01639.1| peptide deformylase [Syntrophothermus lipocalidus DSM 12680] Length = 153 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP+LR + P+ N ++ L++NM + +Y +G+GLAA QIGVL R+VV Sbjct: 1 MAAYQIVVVPDPVLREKALPVTSFNQGLIRLLENMKDSLYEAEGVGLAAPQIGVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D + + + GCLSIP+ R VKR+ + V ++ + Sbjct: 61 FDAGDGLVELINPRILEEEGEEAGIE------GCLSIPNTRGLVKRAKRVVVEALNRYGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + I +GL+A +QHE+DHL+GILF D Sbjct: 115 NIRIEGEGLVARVIQHEIDHLDGILFTDR 143 >gi|210622388|ref|ZP_03293141.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] gi|210154270|gb|EEA85276.1| hypothetical protein CLOHIR_01089 [Clostridium hiranonis DSM 13275] Length = 146 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +P+LR+ +P+ K + + L+D+M + MY DG+GLAA Q+G+L R VV Sbjct: 1 MALRRVTKMGEPVLRKKCKPVTKFDEKLGQLLDDMADTMYEADGVGLAAPQVGMLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I EGCLS+ + V R F+ V+ D + + Sbjct: 61 IDIGEGLIELINPEIIETAGE------QTDIEGCLSVDNINEPVTRPYFVKVKAQDRHGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA HELDHL+GILF+D + + Sbjct: 115 EFELAGEELLARAFCHELDHLDGILFVDRIEK 146 >gi|212695671|ref|ZP_03303799.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] gi|212677344|gb|EEB36951.1| hypothetical protein ANHYDRO_00188 [Anaerococcus hydrogenalis DSM 7454] Length = 162 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 97/148 (65%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ ++++N I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 10 MAIRNIRQVGDPILRKTSKEVKEVNDRIKILLDDMAETMYKADGVGLAAPQVGLLKRVIV 69 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++D + +NP+II + + CLS+P++ A+VKR A + V+Y+D N + Sbjct: 70 VDIRDEDGL---IKLVNPEIIEKDGEQVGVEG-CLSVPNFNANVKRPAHVIVKYLDENGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A+GL A L HE+DHLNG+LFID Sbjct: 126 EKKIEAEGLKAVALCHEIDHLNGVLFID 153 >gi|68535326|ref|YP_250031.1| peptide deformylase [Corynebacterium jeikeium K411] gi|260578459|ref|ZP_05846373.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] gi|68262925|emb|CAI36413.1| polypeptide deformylase [Corynebacterium jeikeium K411] gi|258603481|gb|EEW16744.1| peptide deformylase [Corynebacterium jeikeium ATCC 43734] Length = 193 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 10/172 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+VI DP+L + ++ D+ LI +M E + + +G+GLAA Q+GV R Sbjct: 1 MTIMPIVICGDPVLHNPTTKVDPSEIPDLAPLIADMYETLSAANGVGLAANQVGVNKRFF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITF------SDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V D D + + ++ D +EGCLS+P Y R+ + V Sbjct: 61 VYDCPDTERGEMRRGCVINPVLETSEIPETMPDEEEDEEGCLSVPGYSFPTGRADWARVT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 +D N + + G A CLQHE+ HL+G L+ID L R KR +KK K Sbjct: 121 GLDENGEEVTVEGTGFFARCLQHEVGHLDGFLYIDTLIGRWKRK--SKKAVK 170 >gi|152989916|ref|YP_001355638.1| peptide deformylase [Nitratiruptor sp. SB155-2] gi|151421777|dbj|BAF69281.1| formylmethionine deformylase [Nitratiruptor sp. SB155-2] Length = 176 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 2/151 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L S+ +E + ++ L+D+M E M + +GIGLAA+Q+ V R ++I Sbjct: 1 MIRQIITYPDKRLFLRSKEVENFDEELQTLLDDMYETMVAKNGIGLAAIQVAVPLRALII 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L D +++ + +I VY EGCLS+PDY DV+R+ ++ V Y D Sbjct: 61 NLPDEEGKQHKEDLLELINPVIVEKKGTQVYTEGCLSVPDYYDDVERAEWVKVEYQDRYG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + DGLLA +QHE+DHL+G LFI+ L Sbjct: 121 NKKTLETDGLLAVAVQHEMDHLDGHLFIEKL 151 >gi|307244489|ref|ZP_07526598.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] gi|306492182|gb|EFM64226.1| peptide deformylase [Peptostreptococcus stomatis DSM 17678] Length = 151 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ +P+L + S+ + N + L+D+M + MY DG+GLAA Q+GVL R VV Sbjct: 1 MAIRNILKMGEPLLNKKSKQVVDFNDRLHTLLDDMADTMYKEDGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + V + EGCLS+ DY +V R ++ V+ D + Sbjct: 61 VDIGEGLIELINPVIVETSGE------QTDLEGCLSVVDYIGEVTRPNYVKVKAQDRFGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +G LA HE+DHL GILF++ + ++ Sbjct: 115 DIEVEGEGFLARAFCHEIDHLEGILFVERVEDTEK 149 >gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group] Length = 997 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 86/167 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 795 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 854 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + S VY+E CLS P A+V R + + D Sbjct: 855 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIK 914 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + GL A QHE DHL GILF D +S + + + + L + + Sbjct: 915 VKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVREGLKDLEKKYE 961 >gi|300087750|ref|YP_003758272.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527483|gb|ADJ25951.1| peptide deformylase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 174 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 89/170 (52%), Gaps = 11/170 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I PDP+LR S+ I ++ I L+D+M+E M + +G GLAA Q+GV R +V Sbjct: 1 MPVRKIRIHPDPVLRIKSKKIPVVDRSIRELVDDMVETMQTNNGCGLAAPQVGVSLRCIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + I V +E CLSIP A+V RS + V+ + + + Sbjct: 61 IGMPEQDPFTIINPE-----IVKRRGERVIEEACLSIPGVGAEVTRSLEVIVKGIGRDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 I LLA L+HE+DHLNG+LFID + +K+ K+ Q+ D Sbjct: 116 PLRIKGHDLLAQALEHEIDHLNGLLFIDRVDS------QEKLYKITQISD 159 >gi|288940537|ref|YP_003442777.1| peptide deformylase [Allochromatium vinosum DSM 180] gi|288895909|gb|ADC61745.1| peptide deformylase [Allochromatium vinosum DSM 180] Length = 166 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59 M ++ PD L++VS P++ + + + I ++ E +G+AA Q+ R+V Sbjct: 1 MAILDILKLPDQRLKQVSEPVDSFDQSLRDFIADLEETRLAGPGAVGIAAPQVAHFRRIV 60 Query: 60 VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++DL N + IT + F++ +EGCLS+PDY +V R+ I ++ D + Sbjct: 61 ILDLSSRPKTPNHGHLVLINPEITHWEGFAMGREGCLSVPDYTGNVIRATQIRLKAQDAD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +G A +QHELDHL+G+LF+D + + D+ +K+ K Sbjct: 121 GVEHQYEMEGFEARAVQHELDHLDGLLFVDRVVSRRTDLYRRKVYK 166 >gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70] gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s] gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2] gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150] gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023] Length = 181 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PIL +V+ P+ +I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILHKVAAPVTEITDELRQLVLDMSETMAFYKGVGLAAPQVGQSISLFIM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVERELEDGELVFCDFPRVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVSAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|306836963|ref|ZP_07469913.1| peptide deformylase [Corynebacterium accolens ATCC 49726] gi|304567146|gb|EFM42761.1| peptide deformylase [Corynebacterium accolens ATCC 49726] Length = 207 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI +P+L + + P+E+ + ++ LI +M E M G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGEPVLHQPTTPVEESEISSPEMQQLIADMYETMEVAHGVGLAANQVGIGKR 60 Query: 58 LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTEGPDGTELPADKAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D + + G A CLQHE HL+G ++ D L + K Sbjct: 121 GFPTGRADWARVTGKDEHGNDITVEGYGFFARCLQHETGHLDGYVYTDTLIGRYKRQAKK 180 Query: 161 KMSK 164 + + Sbjct: 181 AIKR 184 >gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 157 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P P+L + + + + L+D+M E M + DG+GLAA Q+G+ ++ V Sbjct: 1 MSVLPIVTYPAPVLEQPCARVTVFDRQLGRLLDDMYETMIAADGVGLAAPQVGIAKQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + + +I + + EGCLS P +V R+ ++ VR + + Sbjct: 61 VDIGDEHGR----IELINPVIIEARGEQIDVEGCLSFPGLFGEVPRANYVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA LQHE+DHL+G+LF + Sbjct: 117 LFTLSATGFLARALQHEIDHLHGVLFTSKV 146 >gi|311104085|ref|YP_003976938.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] gi|310758774|gb|ADP14223.1| peptide deformylase 1 [Achromobacter xylosoxidans A8] Length = 177 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHTILKMGDPRLLRVAAPVERFDTPELHALIDDMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYRRIRYSGR 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q ADG A +QHE DHL G L+ + + Sbjct: 121 DPYGQLIEREADGFHARVVQHECDHLIGRLYPSRIQDFSK 160 >gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 176 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 61/170 (35%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +PILR+ + P+ + LID+M E MY GIGLAA Q+G + Sbjct: 1 MAILAISKLGNPILRQKAVPLTPAEIKKASFQQLIDDMFETMYDEPGIGLAAPQVGRSQQ 60 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 LVV+D V INP I + + EGCLS+ R V R + + V +D Sbjct: 61 LVVMDCPGEGGFP-KTVLINPTIQFYGPEQVEGWEGCLSVDGLRGKVTRPSTVRVTGLDR 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 NA+ A GL A C+QHELDHL G LFID ++ + K Q Sbjct: 120 NAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMTDFSTLTQMDEFQKYWQ 169 >gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1] Length = 170 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + I DP+LR+ ++P+ + + +I+ MY DG+GLAA Q+G+ R Sbjct: 1 MTVR---ILGDPVLRKKAQPVTDF-AQVRAIIEEFKLTMYEQDGVGLAAPQVGISLRFFG 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + +NP+II S++ + +EGCLS+P ADV R +I VRY D + Sbjct: 57 MDDGSGFK-----MIVNPEIIEKSEEKELGEEGCLSVPGVFADVLRHKWIRVRYQDEHGT 111 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + +G A QHE DHL+G+LFIDHL R + +++ K+++ Sbjct: 112 YHEELLEGYPARIFQHEYDHLDGVLFIDHLDSKTRTALAQQLKKIMEE 159 >gi|290968494|ref|ZP_06560033.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] gi|290781490|gb|EFD94079.1| peptide deformylase [Megasphaera genomosp. type_1 str. 28L] Length = 171 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K ++ +P+L+ ++P+ I I L+D+M E MY +G+GLAA QI RL+V+ Sbjct: 19 AKLNIIKAGNPVLKAAAKPVPVITKHIKKLLDDMAETMYKANGVGLAAPQINESLRLIVL 78 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + INP+I+ S + EGCLS+P Y V R + I V+ ++ + Sbjct: 79 -----DDGNGLIELINPEILETSTEMEEDTEGCLSVPGYYGIVSRYSKIKVKALNRRGKT 133 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + LA QHE+DHLNGILFI+ +++ Sbjct: 134 VYYEPEHFLARIFQHEIDHLNGILFIEKAKNIRK 167 >gi|237817222|ref|ZP_04596214.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297249721|ref|ZP_06933422.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|237788035|gb|EEP62251.1| peptide deformylase [Brucella abortus str. 2308 A] gi|297173590|gb|EFH32954.1| def; peptide deformylase [Brucella abortus bv. 5 str. B3196] gi|326410617|gb|ADZ67681.1| peptide deformylase [Brucella melitensis M28] gi|326553909|gb|ADZ88548.1| peptide deformylase [Brucella melitensis M5-90] Length = 214 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214 >gi|24374073|ref|NP_718116.1| peptide deformylase [Shewanella oneidensis MR-1] gi|32363156|sp|Q8EE60|DEF3_SHEON RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 163 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY DGIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P+V +NP+I+ S ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--TRDQPLVLVNPEIVEKSGEYVG-EEGCLSIPGYRAKVTRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLKQQIALKKVRKYA 163 >gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] gi|229487487|sp|B2A2K1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K + DP+L+R ++ + I+ + L+ NML+ MY +GIGLAA QIG+ R++V Sbjct: 1 MAIKKIRTNDDPVLKRKAKKVTNIDDRLERLLTNMLDTMYEAEGIGLAAPQIGISKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + INP+I+ SD+ EGCLS P + V R +TV+ ++ + Sbjct: 61 VDIGED----EIYQLINPEIVDTSDEQEKALEGCLSYPGLQGRVTRPVKVTVKALNPQEE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 II A+GLLA LQHE+DHL+GI FID + R+ Sbjct: 117 EMIIEAEGLLARALQHEIDHLDGITFIDRAEEVFRE 152 >gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L] gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W] gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187] gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1] gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102] gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055] gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus anthracis CI] gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L] gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W] gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97] gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187] gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1] gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102] gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293] gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3] gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342] gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26] gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201] gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42] gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|17546118|ref|NP_519520.1| peptide deformylase [Ralstonia solanacearum GMI1000] gi|23396561|sp|Q8XZJ6|DEF2_RALSO RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17428414|emb|CAD15101.1| putative peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum GMI1000] Length = 177 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INP I SD EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDAMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL GIL+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTR 160 >gi|254409726|ref|ZP_05023507.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196183723|gb|EDX78706.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 190 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 87/148 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ + K++ I L ML+ MYS DGIGLAA Q+GV +++VID Sbjct: 19 LEIHYLGDRVLRQPAKRVAKVDQSIRQLAHQMLQTMYSADGIGLAAPQVGVNKQIIVIDC 78 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP I F QEGCLS+P DVKR + V Y D N + Q Sbjct: 79 EPDNPENPPLILINPTIKRFGQSICDAQEGCLSVPGVYLDVKRPVEVEVAYKDENGRPQR 138 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLL+ +QHE+DHL G++F+D + Sbjct: 139 LKADGLLSRAIQHEMDHLTGVMFVDRVE 166 >gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202] Length = 201 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 63/165 (38%), Positives = 97/165 (58%), Gaps = 5/165 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LR ++ I K++ DI L ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 31 LEIYKLGSKALRTTAKRISKVDIDIRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDI 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + Sbjct: 91 NFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITK--KMS 163 + ADGLLA C+QHE+DHL G+LF+D ++ LK+++I + KM Sbjct: 151 MNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYKMK 195 >gi|302533115|ref|ZP_07285457.1| peptide deformylase [Streptomyces sp. C] gi|302442010|gb|EFL13826.1| peptide deformylase [Streptomyces sp. C] Length = 182 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 72/150 (48%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + +P+L + ++ LI++M MY+ G+GLAA QIG R+ V Sbjct: 12 SVRPMTLLGEPVLHSPCAEVTDFGPELDRLIEDMFATMYAAQGVGLAANQIGTGLRVFVY 71 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 72 DCPDDEDVRHVGHVVNPRLVEADGDEFRGPEGCLSLPGLEAGTVRFDRAVVEGVTSDGAP 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 132 VRVEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108] gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108] gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVRHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|157834784|pdb|2DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 20 Structures Length = 147 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 AVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LF+D+LS Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147 >gi|289422300|ref|ZP_06424150.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] gi|289157245|gb|EFD05860.1| peptide deformylase [Peptostreptococcus anaerobius 653-L] Length = 149 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DP+L + ++ + N + L+D+M + MY+ DG+GLAA Q+G+L R VV Sbjct: 1 MAIRNVVKMGDPVLNKKAKKVVDFNEKLHTLLDDMADTMYNEDGVGLAAPQVGILRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + INP+II + + + CLS+ DY A+V R ++ V+ D N + Sbjct: 61 VDI-----GTGLIELINPQIIAQEGEQTDVEG-CLSVVDYVAEVTRPNYVKVKAQDRNGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +GL+A HELDHL GILF++ + + Sbjct: 115 DFEIEGEGLMARAFCHELDHLEGILFVERVEK 146 >gi|182411922|ref|YP_001816988.1| peptide deformylase [Opitutus terrae PB90-1] gi|238692904|sp|B1ZMD5|DEF_OPITP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|177839136|gb|ACB73388.1| peptide deformylase [Opitutus terrae PB90-1] Length = 192 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 88/183 (48%), Gaps = 16/183 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG------- 53 M + +V + DP+LRR I + + L ML M GIGLAA QIG Sbjct: 1 MSLR-IVHYNDPVLRRKGEKITAFDKALSQLAKEMLATMQEAAGIGLAAQQIGRPVQLCV 59 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--------QEGCLSIPDYRADVK 105 V R ID P + + +I + + + +EGCLS P R DV Sbjct: 60 VDLRRAEIDFTWELDGAKPPLDLIMPMIITNPEITPDRETDVYLVEEGCLSFPKIRGDVP 119 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 R ITVRY D + ++ DGLLA C+QHE+DHLNG+LFID + + R I + L Sbjct: 120 RPDAITVRYQDEHGTPHTLHCDGLLARCIQHEVDHLNGVLFIDRMEKKTRAAIDADVKTL 179 Query: 166 VQL 168 ++ Sbjct: 180 AKI 182 >gi|212709522|ref|ZP_03317650.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] gi|212687860|gb|EEB47388.1| hypothetical protein PROVALCAL_00564 [Providencia alcalifaciens DSM 30120] Length = 168 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + L+D+++E MY + +GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIQCSPVTDF-AAVQTLVDDLIETMYSTDNGIGLAATQIAETKAIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + PMVFINP+II + S + CLS+PD ADV R + V+ D + Sbjct: 60 VIDISEERNE--PMVFINPEIIESEGETSYQEG-CLSVPDVYADVPRFLRVKVKAFDRDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 ++ +D LA +QHE+DHLNG +FIDHLS LKR+M Sbjct: 117 NEFVVDSDEFLAIVMQHEIDHLNGKVFIDHLSTLKRNM 154 >gi|167772294|ref|ZP_02444347.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] gi|167665397|gb|EDS09527.1| hypothetical protein ANACOL_03671 [Anaerotruncus colihominis DSM 17241] Length = 155 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 7/153 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D LR+ SRP+ N + L+D+M E M G+G+AA Q+GVL R VV Sbjct: 1 MALRNILKEGDERLRKKSRPVTDFNERLWTLLDDMYETMK-DGGVGIAAPQVGVLRRAVV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + H +I EGCLSIP V R A + ++ D + Sbjct: 60 IDVGEGKHELV------NPVIVEQSGDQCGGEGCLSIPGQYGLVHRPAQLRLKAQDRYGK 113 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A + HE+DHL+GILFID R+ Sbjct: 114 PFELEAEGYFAVAVCHEVDHLDGILFIDKAERM 146 >gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis] Length = 290 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 86/167 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PD LR ++PI + + L D M ++MY TDG+GL+A Q+GV +L+V + Sbjct: 109 LKIVKYPDSRLRAKNKPINIFDEKLQRLADEMFDLMYKTDGVGLSAPQVGVNVQLMVFNP 168 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + ++ +NP+I +S V+ EGCLS P+ ADV+R + + D + I Sbjct: 169 AGESGKGEEVILVNPEIYKYSKRKEVFTEGCLSFPEIYADVERPMSVKIEAWDVKGKKFI 228 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A QHE DHL ILF + + + I + L Q + Sbjct: 229 LSLKEFNARIFQHEYDHLQRILFFERMHPDILETIRPALQDLEQKYE 275 >gi|294055692|ref|YP_003549350.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] gi|293615025|gb|ADE55180.1| peptide deformylase [Coraliomargarita akajimensis DSM 45221] Length = 193 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIG-------- 53 ++ + + +PILR V P+ + N ++ L ++M+E MY+ +GIGLAA QI Sbjct: 1 MRLRVTKYGEPILREVGAPVTEFNPELKQLAEDMIETMYAEEGIGLAAQQIDKALQICVV 60 Query: 54 ---------VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 V Y Q PM INPK+ D VY+EGCLS PD R V Sbjct: 61 DVRPPEGAEVPYNYSFDGRQPPLDLIMPMAIINPKVTIIDDTEDVYEEGCLSFPDVRGRV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R + + D II ADGLL C+ HE+DHLNG LFID + + ++ K Sbjct: 121 HRPIGVRCEFQDTEGNPHIIEADGLLGRCILHEVDHLNGELFIDLMEKRDLRKNETRIKK 180 Query: 165 LVQ 167 L + Sbjct: 181 LKR 183 >gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803] gi|158512448|sp|A0M3P3|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803] Length = 196 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+L++ ++ I+K + LI+NM + MY+ G+GLAA Q+G+ R+ +I Sbjct: 1 MILPIIAYGDPVLKKKAKDIDKDYPKLEELINNMWDTMYNAYGVGLAAPQVGLPVRMFMI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D VFINP+II + + + EGCLSIP+ R DV R Sbjct: 61 DPAPFADDEELDEAEKKVLMDLRKVFINPQIIEETGEEWAFSEGCLSIPEVREDVFRQPD 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 IT+ Y D N + GL A +QHE DH+ GILF D LS LK+ +I K++ + + + Sbjct: 121 ITIEYHDENWEKHTETYSGLAARVIQHEYDHIEGILFTDKLSSLKKRLIKSKLANISKGK 180 >gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803] gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803] Length = 156 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPAILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843] gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806] gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 191 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ I L ML+ MYS++GIGLAA Q+ V +L+VID Sbjct: 17 LELHYLGDRVLRQPAKRIAKVDDSIRQLAREMLQTMYSSNGIGLAAPQVAVNKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INP+II +S + +EGCLSIPD DV R I V Y D + + Sbjct: 77 EHDKPENPPLILINPQIIGYSRELCKAEEGCLSIPDVFLDVIRPQAIEVSYKDEQGKPRK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161 + A+GLLA +QHE+DHLNG++F+D + + L + KK Sbjct: 137 LQANGLLARVIQHEMDHLNGVMFVDRVDNDLALNEELKK 175 >gi|117920762|ref|YP_869954.1| peptide deformylase [Shewanella sp. ANA-3] gi|117613094|gb|ABK48548.1| peptide deformylase [Shewanella sp. ANA-3] Length = 163 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I I ID+++E MY DGIGLA+ Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAIQGFIDDLIETMYHTDDGIGLASTQVGSTDAVI 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R P+V INP+I+ S ++ +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSE--TRDQPLVLINPEIVEKSGEYVG-EEGCLSIPGYRAKVTRFEKVKVTALDRQG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSALKQQIALKKVRKYA 163 >gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2] gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2] Length = 163 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L P+ +D+ L +ML MY+ G GLAA QIG+L R+ V Sbjct: 1 MPVLPILCWPDARLATPCDPVAP-GADLRALAADMLATMYAATGRGLAAPQIGILQRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R P V +NP+I+ S+ EGCLS+P D+ R A I +R+ D + Sbjct: 60 MDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGCLSLPGISPDISRPAEIRLRWRDLDGT 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + G ATC QHE+DHL+GIL +DHL Sbjct: 120 PHEAHLTGFAATCAQHEIDHLDGILTLDHL 149 >gi|302517742|ref|ZP_07270084.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|318080637|ref|ZP_07987969.1| polypeptide deformylase [Streptomyces sp. SA3_actF] gi|302426637|gb|EFK98452.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 183 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 75/159 (47%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +PL ++ P+L +R + L++++ MY+ G+GLAA QIG R+ V D Sbjct: 13 VRPLSLYGAPVLTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D R++ +NP+++ EGCLS+P A R V + + Sbjct: 73 CPDDEDRRHLGHLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARR 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + G A CLQHE DHL G L++D L + + ++ Sbjct: 133 RVEGTGFFARCLQHEYDHLEGGLYVDRLDARRHRKVLRE 171 >gi|218904997|ref|YP_002452831.1| peptide deformylase [Bacillus cereus AH820] gi|218538969|gb|ACK91367.1| peptide deformylase [Bacillus cereus AH820] Length = 156 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV R+ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp. PCC 7120] gi|23396565|sp|Q8YVH1|DEF2_ANASP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC 7120] Length = 179 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 5 LLPIIQLGNPTLRQKAAWVENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIV 64 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + + P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 65 ASRPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEYTD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +A QHE DHL+G+LFID + + ++ +LV Sbjct: 125 RYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNTITEEEYQELV 174 >gi|298247409|ref|ZP_06971214.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] gi|297550068|gb|EFH83934.1| peptide deformylase [Ktedonobacter racemifer DSM 44963] Length = 172 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 1/153 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ DPILR+ ++ I + ++ + L+ +M E M++ DG GLAA QIG+ RL V Sbjct: 1 MSLRNIVMLGDPILRQKAKRIHRFDASLRKLVKDMFETMHANDGAGLAAPQIGLSLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA-DVKRSAFITVRYMDCNA 119 ++L+D K+ V + I ++ +GCLSIP Y +V+R+ + V+ D N Sbjct: 61 VELEDPETEKHYKVAMANPEIIKTEGEQTGLDGCLSIPGYYGVNVRRANKVIVKGQDLNG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + A+G A LQHE+DHLNG+LFID L Sbjct: 121 KPMKVMAEGYYAWALQHEIDHLNGVLFIDLLDS 153 >gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776] gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776] Length = 196 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 4/159 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V + P LR S P+ +INS++ I M E+MY+ GIGLA+ Q+ + + ++ Sbjct: 1 MALEIVKYGHPALRHKSTPVTEINSELRKAIAEMFELMYAAKGIGLASNQVAIPRQFFIL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 +L A K+ V +I +EGCLS P VKR+ + + D + Sbjct: 61 NLTGDAAEKDEEVVFINPVILNRKSSCEGEEGCLSFPGLYGPVKRAGEVLIEAFDLDGNC 120 Query: 122 QII----YADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + D L +QHE DHL+G+LFID ++ R Sbjct: 121 FEMTLSAKEDDLAVRAVQHESDHLDGMLFIDRMTDRARK 159 >gi|28210907|ref|NP_781851.1| peptide deformylase [Clostridium tetani E88] gi|39930881|sp|Q895Q2|DEF_CLOTE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium tetani E88] Length = 150 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D +LR+ SR +EKI+ I L+D+ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNLRFLGDELLRKKSRRVEKIDDRIQALLDDMLDTMYENNGVGLAAPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + + CLS+P + +V+R + V+ + + + Sbjct: 61 IDIGEG-----PLFLINPEIIEQEGSYIEQEG-CLSVPGRQGEVERPYRVKVKAQNRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ + LA L HE+DHLNG+LF+D + +K Sbjct: 115 EIIVEGEEFLAKALCHEIDHLNGVLFVDKIIDVK 148 >gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b] Length = 466 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 7/157 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V P+ ILR P+ K + + +D + + MY DG+G+AA Q+ + RL V+ Sbjct: 3 KVVEVPNDILRVTCEPVTKFDKKLRQTVDRLFDTMYEYDGVGVAAPQVNLNQRLAVVHTD 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D P+V INP+II S + CLSIP V+R I V+ D + I Sbjct: 63 DETG---PLVLINPEIIETSGREVGLEG-CLSIPGEFGFVERHESIVVKNQDVKGRTHTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL---SRLKRDMI 158 A G A +QHE+DHL+G+LF D L + K I Sbjct: 119 QASGFFARAIQHEMDHLDGVLFTDKLAVPNPGKDKRI 155 >gi|75911263|ref|YP_325559.1| formylmethionine deformylase [Anabaena variabilis ATCC 29413] gi|75704988|gb|ABA24664.1| Formylmethionine deformylase [Anabaena variabilis ATCC 29413] Length = 179 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ +P LR+ + +E I ++ I LID+++ + +G+G+A+ Q+ YRL ++ Sbjct: 5 LLPIIQLGNPTLRQKAAWVENIHDAAIQQLIDDLIATVAKANGVGIASPQVAQSYRLFIV 64 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + + P INPKI+ S + EGCLS+P R V R I V Y D Sbjct: 65 ASRPNPRYPHAPVMEPTAMINPKIVGSSTEIVKGWEGCLSVPGIRGLVPRHQAIEVEYKD 124 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q +A QHE DHL+G+LFID + + ++ K+V Sbjct: 125 RYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRVESNLNIITEEEYQKIV 174 >gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium sp. 'sapolanicus'] Length = 150 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L DP+LR ++ ++KI + LIDNM E MY+ +G+GLAA Q+G+L R+ V Sbjct: 1 MAVLKLREIGDPVLRSKAKKVDKITPKTIQLIDNMFETMYAEEGVGLAAPQVGILKRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + I + + +EGCLSIP +V RS I V ++ + + Sbjct: 61 IDIGEGNK-----IVLINPEIIEENGKMIMEEGCLSIPGRTGEVIRSKEIKVSSLNRDGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I A+G A +QHE+DHL+G+LFID + Sbjct: 116 EIEIIAEGFEARAIQHEIDHLDGVLFIDKM 145 >gi|226226031|ref|YP_002760137.1| peptide deformylase [Gemmatimonas aurantiaca T-27] gi|226089222|dbj|BAH37667.1| peptide deformylase [Gemmatimonas aurantiaca T-27] Length = 196 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 13/174 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+LR+ ++ +E + ++ L+DNM + M + G+GLAA Q+G L RL V Sbjct: 1 MSLLDIHVLGSPVLRQETQRVESVTPELRRLVDNMFDTMEAAKGVGLAAPQVGRLERLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + + I + +EGCLSIP+ ADV R A + VR D + Sbjct: 61 VDADD------VRLVVINPEIILREGLERGEEGCLSIPEVYADVDRPARVIVRAQDIDLN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-------KMSKLVQ 167 + A LL CLQHE+DHL G LF D LS LK+ K K KL++ Sbjct: 115 WYEVDAANLLGRCLQHEIDHLFGKLFTDRLSLLKKRSAMKDWDHEKGKYPKLLR 168 >gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia stuttgartiensis] Length = 170 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V +P P+LR+ ++P+ +IN+D+ + M+E+M GIGLAA Q+G RL VID+ Sbjct: 3 IVTYPAPVLRQKAKPLTEINADVYKKAEKMVELMRRVHGIGLAAPQVGWSVRLFVIDVVG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + N I + +EGCLS P V R+ I V + N Q + Sbjct: 63 NNVDDN---VFINPSIMEEAGETSNEEGCLSFPGIMGKVIRTHKIKVCAYNLNGQKIEVV 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + LLA QHELDHLNG LFID +S R ++++ +L Q Sbjct: 120 LEDLLARAWQHELDHLNGCLFIDRMSPASRLAASQQLKELEQ 161 >gi|281355873|ref|ZP_06242367.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] gi|281318753|gb|EFB02773.1| peptide deformylase [Victivallis vadensis ATCC BAA-548] Length = 197 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 12/175 (6%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DP+L+ +RP+E + +I L NM E + G+G+AA Q+G RLVV D+ + Sbjct: 13 TAGDPVLKAKARPVEAVTPEIRELACNMQEALRVFSGVGIAAPQVGESLRLVVFDIPVDS 72 Query: 68 H------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + P+ INP+I+ SD EGCLS+PD A V R A + R Sbjct: 73 MGENPTVGEQLLLPRMPLTVINPEIVASSDVLCESDEGCLSVPDIWAPVVRPATVVFRAT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + GLL C+QHELDHL+G+LF+D +S I + + +L++ + Sbjct: 133 TLDGEVIECECGGLLGRCIQHELDHLDGVLFVDRVSPEAARTIERDLKQLIRYGE 187 >gi|327398774|ref|YP_004339643.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181403|gb|AEA33584.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 89/164 (54%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + ++PD ILR+ ++ +EKI+ I++L++ M E MY +GIGLAA Q+G+ +LVVIDL+ Sbjct: 2 EVRVYPDGILRKKAKDVEKIDDRIVDLLNQMRETMYKFNGIGLAAEQVGLQEKLVVIDLR 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + I + + Y R +I V+Y+D N QI+ Sbjct: 62 PDGKNQPIELINPVIIASEGIFEEHEEGCLSVPGYYDVVKDRKKWIKVKYLDRNENEQIL 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 D L+ +QHE+DHLNG LFIDHL +++ K+ K + Sbjct: 122 ETDEFLSVVIQHEIDHLNGKLFIDHLPPTRKEFFKKQWKKRQKE 165 >gi|126174517|ref|YP_001050666.1| peptide deformylase [Shewanella baltica OS155] gi|153000548|ref|YP_001366229.1| peptide deformylase [Shewanella baltica OS185] gi|160875185|ref|YP_001554501.1| peptide deformylase [Shewanella baltica OS195] gi|217973486|ref|YP_002358237.1| peptide deformylase [Shewanella baltica OS223] gi|304408620|ref|ZP_07390241.1| peptide deformylase [Shewanella baltica OS183] gi|307305448|ref|ZP_07585196.1| peptide deformylase [Shewanella baltica BA175] gi|125997722|gb|ABN61797.1| peptide deformylase [Shewanella baltica OS155] gi|151365166|gb|ABS08166.1| peptide deformylase [Shewanella baltica OS185] gi|160860707|gb|ABX49241.1| peptide deformylase [Shewanella baltica OS195] gi|217498621|gb|ACK46814.1| peptide deformylase [Shewanella baltica OS223] gi|304352441|gb|EFM16838.1| peptide deformylase [Shewanella baltica OS183] gi|306911751|gb|EFN42176.1| peptide deformylase [Shewanella baltica BA175] gi|315267381|gb|ADT94234.1| peptide deformylase [Shewanella baltica OS678] Length = 163 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID+++E MY DGIGLAA Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R P V INP+I+ S +F +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSD--GRDQPQVLINPEIVEKSGEFVG-EEGCLSIPGYRAKVSRFEKVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163 >gi|255325809|ref|ZP_05366901.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311740109|ref|ZP_07713942.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] gi|255297021|gb|EET76346.1| peptide deformylase [Corynebacterium tuberculostearicum SK141] gi|311304805|gb|EFQ80875.1| peptide deformylase [Corynebacterium pseudogenitalium ATCC 33035] Length = 207 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P+VI + +L ++P+E+ ++ LI +M E M + +G+GLAA Q+G+ R Sbjct: 1 MTIRPIVIHGETVLHEPTQPVEESEISTPEMQQLIADMYETMDAANGVGLAANQVGIGKR 60 Query: 58 LVVIDLQD-----------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY 100 L V D NP++ + T D EGCLS+P Sbjct: 61 LFVYHCPDTDGPNGTELPSEEAGMRKGCVINPVLETSEIPETMPADDGSDDEGCLSVPGE 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R+ + V D N + G A CLQHE HL+G L+ D L + K Sbjct: 121 GFPTGRADWARVTGKDENGNDISVEGYGFFARCLQHETGHLDGFLYTDTLIGRYKRQAKK 180 Query: 161 KMSK 164 + + Sbjct: 181 AIKR 184 >gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|39931068|sp|Q81WH1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248] Length = 156 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+GLLA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGLLARAIQHEIDHLHGVLFTSKVTR 148 >gi|302671348|ref|YP_003831308.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316] Length = 163 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + +++I I L+++MLE MY +G+GLAA Q+G+L R+ V Sbjct: 1 MALRTIREIGDDVLVKNCKEVKEITPRIKELVEDMLETMYEANGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +PMVFINP+I+ S + + Y+ CLS+P V R+ ++ + D + Sbjct: 61 IDVTGE----DPMVFINPEILETSGEQTGYEG-CLSVPGKSGIVTRANYVKAKATDLDGN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 II + LLA +QHE DHLNG +++D + Sbjct: 116 EFIIEGEELLARAIQHENDHLNGKMYVDKVE 146 >gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110] gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110] Length = 187 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 87/148 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+VID Sbjct: 17 LDIHVLGDRALRQPAKRITKVDDSIRKLAKEMLQTMYSSHGIGLAAPQVAIHKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P++ INPKI S++ V +EGCLSIP DV R I V + D + + Sbjct: 77 EPDNPENPPLILINPKITRVSEELCVVEEGCLSIPGVYLDVTRPKTIEVSFKDEQGKPRK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LLA +QHE+DHLNG++F+D + Sbjct: 137 IQATDLLARVIQHEMDHLNGVMFVDRVE 164 >gi|260167211|ref|ZP_05754022.1| peptide deformylase [Brucella sp. F5/99] gi|261756615|ref|ZP_06000324.1| peptide deformylase-like protein [Brucella sp. F5/99] gi|261736599|gb|EEY24595.1| peptide deformylase-like protein [Brucella sp. F5/99] Length = 164 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 1 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K +INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 LELDRAAGSKI---YINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 164 >gi|157375143|ref|YP_001473743.1| peptide deformylase [Shewanella sediminis HAW-EB3] gi|157317517|gb|ABV36615.1| Peptide deformylase [Shewanella sediminis HAW-EB3] Length = 163 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID++L+ MY DGIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-ESVQGFIDDLLDTMYDTEDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL R P V INP+II DF +EGCLSIP YRA V RS + ++ +D Sbjct: 60 VIDLSPE--RDQPQVLINPEIIEAEGDFVG-EEGCLSIPGYRAKVTRSEKVKIKALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 I D LA +QHE++HL G++F DHLS+LK+ + KK+SK Sbjct: 117 TPFEIETDTFLAIVIQHEMEHLQGVVFTDHLSKLKQQIALKKVSKYK 163 >gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] gi|123773734|sp|Q46HV9|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A] Length = 202 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 97/167 (58%), Gaps = 6/167 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D LR + I K++ I L +ML MYS+ GIGLAA Q+G+ RL+VIDL Sbjct: 31 LKVYQLGDEALRTPANRIVKVDDAIRKLAKDMLITMYSSKGIGLAAPQVGIQKRLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + PMVFINP+II+ S Y+EGCLSIP +V R + I + Y D + + Sbjct: 91 KFEDPNSPPMVFINPEIISSSATLDTYEEGCLSIPGVYLNVLRPSSIKLSYRDEMGRPKK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ADGL+A C+QHE+DHLNG+ F+D ++ +++ K + + Sbjct: 151 MNADGLMARCIQHEIDHLNGVCFVDKVTD------EEELKKQLNENN 191 >gi|160947099|ref|ZP_02094266.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] gi|158446233|gb|EDP23228.1| hypothetical protein PEPMIC_01031 [Parvimonas micra ATCC 33270] Length = 164 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 92/148 (62%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+LR+ +R +E I+ I NL+++M E MY++DG+GLA QIG+L RLV Sbjct: 1 MALRNIRIDDDPVLRKKARKVEVIDDKIKNLLEDMAETMYNSDGVGLACPQIGILKRLVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D INP+I+ S + + CLSIPD R VKR + +Y D + Sbjct: 61 IDVGDEHGLL---KMINPEILESSGEQVGPEG-CLSIPDVRGFVKRPEKVKFKYTDVDEN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 QII A GLLA C+ HE+DHLNGILF D Sbjct: 117 EQIIDATGLLAVCICHEIDHLNGILFTD 144 >gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 156 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ + Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDVDDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|317121756|ref|YP_004101759.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] gi|315591736|gb|ADU51032.1| methionyl-tRNA formyltransferase [Thermaerobacter marianensis DSM 12885] Length = 550 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 6/151 (3%) Query: 4 KPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR ++P+ K+N ++ L+D M MY+ DGIGLAA Q+GV R+VV+D Sbjct: 23 LPIVKGADEPVLRTPAQPVAKVNREVRQLLDRMAATMYAADGIGLAAPQVGVSKRIVVVD 82 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + D + INP+I+ ++ EGCLS+P A+V+R A + V +D + + Sbjct: 83 VGDG-----LIELINPEIVRRGEETETAYEGCLSLPRLLAEVERPATVQVTALDRHGRRI 137 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I +GLLA CLQHE+DHL+G+L D ++ Sbjct: 138 WIEGEGLLARCLQHEIDHLDGVLITDRARKV 168 >gi|241662938|ref|YP_002981298.1| peptide deformylase [Ralstonia pickettii 12D] gi|240864965|gb|ACS62626.1| peptide deformylase [Ralstonia pickettii 12D] Length = 177 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INP I S+D EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSNDMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G+L+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160 >gi|186686636|ref|YP_001869832.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186469088|gb|ACC84889.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 190 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 8/168 (4%) Query: 1 MVKK-PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + P++ +P LR+ + +E I + I LI++++ + +G+G+AA Q+ YRL Sbjct: 15 MTELAPIIQLGNPTLRQKAVWVENIQDKHIQKLIEDLIATVAKANGVGIAAPQVAQSYRL 74 Query: 59 VVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ +A P INPKII S + EGCLS+P R V R I V Sbjct: 75 FIVASRPNARYPNAPEMEPTAMINPKIIAHSTEVVKDWEGCLSVPGIRGLVPRYKSIEVE 134 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Y DC Q +A QHE DHL+GI+F+D L DMIT++ Sbjct: 135 YTDCQGNLQKQELTDFIARIFQHEYDHLDGIVFVDRLES-TLDMITEQ 181 >gi|239977965|ref|ZP_04700489.1| polypetide deformylase [Streptomyces albus J1074] gi|291449876|ref|ZP_06589266.1| polypetide deformylase [Streptomyces albus J1074] gi|291352825|gb|EFE79727.1| polypetide deformylase [Streptomyces albus J1074] Length = 206 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + + + IL R R + + + + L+D+M + +G GLAA Q+GV RL Sbjct: 20 AVRRITVVGEEILHRPCREVTEDAFGTAGLAALVDDMFATNQAAEGAGLAANQVGVDLRL 79 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYM 115 V D+ D ++ NP + EGCLS+P V R VR Sbjct: 80 FVWDITDDWGVRHVGHLANPVLDDVPATDRRLVEEPEGCLSVPGPYRVVPRLDRAVVRGR 139 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 D + + +I G A CLQHE DHL G L++D L+R +R ++M Sbjct: 140 DKDGRPLVIEGRGYFARCLQHETDHLRGHLYLDRLARRERKSALQEMR 187 >gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 181 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 4/151 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P IL + + + ++ L+++M + M DG+GLAA QIG+ R+ V+ Sbjct: 22 AVRKIVTYPAEILEEPCETVTEFDKKLVKLLNDMYDTMIEFDGVGLAAPQIGIRKRIAVV 81 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ D + INP+II + + + CLS P +V R + ++ D + Sbjct: 82 DIDDENGT---IELINPEIIETGGEQTGPEG-CLSFPGLYGEVTRPFTVKIKAQDRKGKS 137 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + AD LA +QHE+DHL+G+LF ++R Sbjct: 138 FTLEADDFLARAIQHEIDHLDGVLFTSKVNR 168 >gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708] gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708] Length = 187 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 86/143 (60%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 D +LR+ ++ + KI+ ++ L+ ML+ MYS DGIGLAA Q+G+ +L+VID + Sbjct: 22 LGDRVLRQPAKRVTKIDDELRQLVREMLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKP 81 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 +V INP I S + V +EGCLSIP DVKR + + Y D + + + A Sbjct: 82 EAPALVLINPVIKQVSSELCVAEEGCLSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGD 141 Query: 129 LLATCLQHELDHLNGILFIDHLS 151 LL C+ HE+DHLNG+LF+D + Sbjct: 142 LLGRCILHEMDHLNGVLFVDRVE 164 >gi|186476100|ref|YP_001857570.1| peptide deformylase [Burkholderia phymatum STM815] gi|184192559|gb|ACC70524.1| peptide deformylase [Burkholderia phymatum STM815] Length = 177 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R+++P++ + ++ L+ +M E M+ +G GLAA QIGV ++V+ Sbjct: 1 MIHEILKMGDPRLLRIAKPVDHFDTPELHELVRDMFETMHDANGAGLAAPQIGVDLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGHNERYPDAPSVPETVLINPTITPVSLDTEEGWEGCLSVPGLRGAVSRLSMIRYHGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ + Sbjct: 121 DQFGKPIDRVAEGFHARVVQHECDHLIGKLYPMRITDFAK 160 >gi|154175184|ref|YP_001407439.1| peptide deformylase [Campylobacter curvus 525.92] gi|112803277|gb|EAU00621.1| peptide deformylase [Campylobacter curvus 525.92] Length = 174 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L VS+ +E + ++ L+D+M E M + DGIGLAA+Q+GV R+ ++ Sbjct: 1 MVLEILSYPNKKLYEVSKEVETFDEELHKLLDDMYETMIAKDGIGLAAIQVGVAKRIFIV 60 Query: 62 DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ I VYQEGCLS+P + DVKR+ + +++ D Sbjct: 61 NLSNEEGVQDKADLIEIINPEFELKVGECVYQEGCLSVPGFYEDVKRAERVKIKFQDRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Q + I DGLLA LQHE DHL+G LFI+ + KR Sbjct: 121 QERQIETDGLLAVALQHENDHLDGHLFIEKIGYNKRKKF 159 >gi|239835143|ref|ZP_04683470.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] gi|239821282|gb|EEQ92852.1| peptide deformylase [Ochrobactrum intermedium LMG 3301] Length = 165 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 63/169 (37%), Positives = 99/169 (58%), Gaps = 4/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+V +PD LR V+ P+ +S + L ++L+ M + GIG+ A IG+ RLVV Sbjct: 1 MTVRPIVSYPDKRLRAVADPVTLFDSALQELGTDLLDTMRAAPGIGITAPHIGIAMRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + P ++NP+I+ S++ +QEG +S+P +V+R A I +RY D + Sbjct: 61 L----ELPEAGPKFYVNPQILWASEEKIHHQEGSVSMPGVVDEVERHARIKIRYQDLDGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q ++GLLA C QHE+D L+GI +I LSRL+RD + K+ K + R Sbjct: 117 EQTEESEGLLAVCHQHEIDQLDGIFWIQRLSRLRRDRLVKRYEKSQRQR 165 >gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215] gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9215] Length = 201 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 5/165 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LR ++ I K++ D L ML+ MYS GIGLAA Q+G+ L+VID+ Sbjct: 31 LEIYKLGSKTLRTTAKRISKVDIDTRKLAKEMLQSMYSAKGIGLAAPQVGISKELLVIDI 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I + + Y+EGCLSIP +V R + I +++ D + + Sbjct: 91 NFEDSAAEPLILINPEITAYGSTLNSYEEGCLSIPGVYLNVIRPSTIKLKFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS---RLKRDMITK--KMS 163 + ADGLLA C+QHE+DHL G+LF+D ++ LK+++I + KM Sbjct: 151 MNADGLLARCIQHEVDHLKGVLFVDRVTSKEDLKKELIKEGYKMK 195 >gi|325478778|gb|EGC81889.1| peptide deformylase [Anaerococcus prevotii ACS-065-V-Col13] Length = 155 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ S+ + ++ I L+D+M E MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRQEGDPLLRKKSKVVPEVTDRIKVLLDDMAETMYQADGVGLAAPQVGILKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D +NP+II + + CLSIP++ A VKR + V+Y+D + Sbjct: 61 VDPHDETTGLVK--LVNPEIIEADGEQVGVEG-CLSIPNFNATVKRPEHVKVKYIDEDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHL+GILF D Sbjct: 118 EKIWDAHGFPAVILSHEIDHLDGILFRDK 146 >gi|187477209|ref|YP_785233.1| peptide deformylase [Bordetella avium 197N] gi|115421795|emb|CAJ48306.1| peptide deformylase [Bordetella avium 197N] Length = 177 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ S ++ LID+M + M G+GLAA QIGV +LV+ Sbjct: 1 MIHSILKMGDPRLLRVAAPVERFGSAELKQLIDDMFDTMAYAHGVGLAAPQIGVDLQLVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V NP I SD+ EGCLS+P R V R +I + Sbjct: 61 FGFERNPRYPDAPAVPKTVLCNPVITPLSDEMEDGWEGCLSVPGLRGLVPRYQYIRYQGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G A +QHE DHL G L+ + + Sbjct: 121 APDGTAIDREASGFHARVVQHECDHLIGRLYPSRIQDFSK 160 >gi|120599034|ref|YP_963608.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146292895|ref|YP_001183319.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120559127|gb|ABM25054.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145564585|gb|ABP75520.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319426575|gb|ADV54649.1| peptide deformylase [Shewanella putrefaciens 200] Length = 163 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R ++P++ I + ID+++E MY DGIGLAA Q+G ++ Sbjct: 1 MAVLDILTIPDERLKRKAQPVKDI-EAVQGFIDDLIETMYHTDDGIGLAATQVGSTDAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D R P+V INP+I+ S +F +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSD--GRDQPLVLINPEIVEKSGEFVG-EEGCLSIPGYRAKVSRFEKVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + I D LA LQHE+DHL+G +FI+HLS LK+ + KK+ K Sbjct: 117 KAIEIETDEFLAIVLQHEIDHLHGKVFIEHLSMLKQQIALKKVRKYA 163 >gi|86741351|ref|YP_481751.1| peptide deformylase [Frankia sp. CcI3] gi|86568213|gb|ABD12022.1| peptide deformylase [Frankia sp. CcI3] Length = 230 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 40/204 (19%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ DP+LR + + + ++ + L+ +M++ MY G+GLAA QIGV RL V Sbjct: 1 MTVLPIRTVGDPVLRTPTTLVTEFDTALGRLVTDMIDTMYDAPGVGLAAPQIGVGLRLFV 60 Query: 61 IDLQDHAHRKNPMVFI----------------------------------------NPKI 80 D+ ++ + + Sbjct: 61 FDVDYDPRDESVPRVPRVVVNPVLELGPDPGRPGETQRPGGIQRSGETQRSGETQRSGET 120 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + EGCLS+P R+ VR +D Q +GLLA C QHE+DH Sbjct: 121 QRSGETQQHGPEGCLSVPGLHFPTTRALAARVRGVDVTGQPVEYAGEGLLARCFQHEVDH 180 Query: 141 LNGILFIDHLSRLKRDMITKKMSK 164 L+GIL++D L+ R + + + Sbjct: 181 LDGILYVDRLTGEARRAAVQALRE 204 >gi|309782141|ref|ZP_07676871.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] gi|308919207|gb|EFP64874.1| peptide deformylase [Ralstonia sp. 5_7_47FAA] Length = 177 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INP + SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTVEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G+L+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160 >gi|311029970|ref|ZP_07708060.1| peptide deformylase [Bacillus sp. m3-13] Length = 159 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V +P P+L + + + ++ L+ NM + M DG+GLAA QIG+ R+ + Sbjct: 1 MTILDIVKYPAPVLEQNCEAVTVFDKRLIRLLSNMYDTMLEADGVGLAAPQIGIAKRIAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+I+ + + CLS PD +VKR+ ++ VR + + Sbjct: 61 VDIDDKHG---KIELINPEIVDEEGEQVGPEG-CLSFPDLYGEVKRADYVKVRAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LF + Sbjct: 117 WYELEARGFLARAIQHEIDHLNGVLFTSKV 146 >gi|325104375|ref|YP_004274029.1| peptide deformylase [Pedobacter saltans DSM 12145] gi|324973223|gb|ADY52207.1| peptide deformylase [Pedobacter saltans DSM 12145] Length = 194 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 15/183 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+ ++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRSILAYGHHILKQKCNYIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 ---------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + FIN KII S++ +EGCLSIP+ VKR Sbjct: 61 DSKSTFDNLGEEDRKFYFPQDDKGIMETFINAKIIQRSEELWDDEEGCLSIPNLFYKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + IT+ Y + N + QI G A +QHE DH G+L++D+L L + ++ K+ K++ Sbjct: 121 NWAITIEYYNRNFEKQIRTFSGTTARMIQHEYDHTEGVLYLDYLKPLTKRLMASKLQKIL 180 Query: 167 QLR 169 + + Sbjct: 181 KGQ 183 >gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg] gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss] gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14] gi|13878461|sp|Q9PK41|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg] Length = 181 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 90/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+V+ PI++I ++ L+ +M E M G+GLAA Q+G L ++ Sbjct: 1 MIRDLEYYDSPILRKVAAPIDEITDELRQLVLDMSETMTFYKGVGLAAPQVGHSVALFIM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP I S+ EGCLSIP R +V R ITV Sbjct: 61 GVEKELDDGELIFCDFPKVFINPVITQKSEQLVYGNEGCLSIPGLRGEVARPDKITVTAK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITKKMSKLVQ 167 + + Q + +G LA + HE DHL+G+L+ID +S + K + K+ + Sbjct: 121 NLDGQPFSMTLEGFLARIVMHETDHLHGVLYIDRMSDKDKTKQFKNNLEKIRR 173 >gi|289578510|ref|YP_003477137.1| peptide deformylase [Thermoanaerobacter italicus Ab9] gi|289528223|gb|ADD02575.1| peptide deformylase [Thermoanaerobacter italicus Ab9] Length = 159 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + VRY+D + Sbjct: 61 IDIGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVRYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|238916653|ref|YP_002930170.1| hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] gi|238872013|gb|ACR71723.1| Hypothetical protein EUBELI_00715 [Eubacterium eligens ATCC 27750] Length = 171 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR ++ I ++ I LID+M + MY +G+GLAA Q+G+ RLVV Sbjct: 15 MAIRNIRTLGDDILRAKAKEITEMTPRIEELIDDMFDTMYEANGVGLAAPQVGIRKRLVV 74 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D P+V INP ++ S + + CLS+P +V R + V+ ++ N + Sbjct: 75 IDCGDD-----PIVLINPVVLETSGSQTGLEG-CLSVPGKTGEVTRPNYAKVKALNENME 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ + LLA CL HE+DHL+GI+++D + Sbjct: 129 EIIVEGEELLARCLLHEIDHLDGIMYVDKVE 159 >gi|313888509|ref|ZP_07822176.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845538|gb|EFR32932.1| peptide deformylase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 163 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ + N + LID+M E M G+GLAA QIG+L R++V Sbjct: 1 MAIRKIRTDGDPILRKKSKVVTNYNDRLKLLIDDMYETMDLAPGVGLAAPQIGILKRVIV 60 Query: 61 IDL----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D D + INP+II + + CLS+P + VKR+ I V+Y D Sbjct: 61 VDNREEDNDEGEKPMRFYMINPEIIEKDGEEVSMEG-CLSVPGKQGTVKRAKHIKVKYND 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q +++ A+ LA +QHE DHL+GIL+ D Sbjct: 120 LEGQEKLMEAEDFLARIIQHETDHLDGILYTDK 152 >gi|319793878|ref|YP_004155518.1| peptide deformylase [Variovorax paradoxus EPS] gi|315596341|gb|ADU37407.1| peptide deformylase [Variovorax paradoxus EPS] Length = 179 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + ++ L+ +M E M++ +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMHAVNGAGLAAPQIGVDQQLV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I +D EGCLS+P R V R A I Sbjct: 61 IFGTDIVNPRYPDAPPVPRTVLLNPVITPIGEDEEEGWEGCLSVPGLRGVVPRFANIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A G A +QHE+DHL G L+ + R Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162 >gi|293977820|ref|YP_003543250.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] gi|292667751|gb|ADE35386.1| peptide deformylase [Candidatus Sulcia muelleri DMIN] Length = 189 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 9/176 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 61 EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 + +G L+ +QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 121 YKQHFNGFLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176 >gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With Inhibitor Length = 188 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V + Sbjct: 10 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWNAL 69 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 70 YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 129 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 130 KILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIR 173 >gi|229495940|ref|ZP_04389664.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] gi|229317032|gb|EEN82941.1| peptide deformylase [Porphyromonas endodontalis ATCC 35406] Length = 190 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 5/172 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ ++ P+LR V++ I ++ LI M + MY +DGIGLAA QIG RL+VID Sbjct: 1 MLPIYLYGHPVLREVAQDITPEYPNLSGLIAEMWKSMYESDGIGLAAPQIGKSIRLLVID 60 Query: 63 LQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 A IN +I S++ +EGCLS+P V+R IT+ Y+D Sbjct: 61 ASPMAEYFPECKDFKTVMINARITELSEETLSEEEGCLSLPGIHERVERPKEITIEYLDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + G A +QHE DHL G LF DH+S L++ ++ K++++ + Sbjct: 121 QFTPQTRHLTGFAARVVQHEYDHLEGKLFTDHVSTLRKSLLKNKLARIASGK 172 >gi|160880624|ref|YP_001559592.1| peptide deformylase [Clostridium phytofermentans ISDg] gi|189083068|sp|A9KM99|DEF_CLOPH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160429290|gb|ABX42853.1| peptide deformylase [Clostridium phytofermentans ISDg] Length = 163 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 3/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + I D IL + S+ IE++ I LID+ML+ MY G+GLAA Q+GVL RLVV Sbjct: 1 MAKRNIRIMGDSILNKTSKVIEEVTPKIDTLIDDMLDTMYDAGGVGLAAPQVGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ P++ INP+II+ + + + CLS+P V R ++ V+ D + + Sbjct: 61 IDVSLE--GNEPIILINPEIISTDGEQTGDEG-CLSLPGKAGIVTRPNYVKVKAYDRHMK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+GIL+++ ++ Sbjct: 118 PFEVEGEGLLARAFCHEIDHLDGILYVEKVN 148 >gi|268589951|ref|ZP_06124172.1| peptide deformylase [Providencia rettgeri DSM 1131] gi|291314667|gb|EFE55120.1| peptide deformylase [Providencia rettgeri DSM 1131] Length = 169 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++ PD LR P+ + + LID++L+ MY + +GIGLAA QI ++ Sbjct: 1 MAVREIIEIPDERLRIKCSPVTDF-AAVQTLIDDLLDTMYSTDNGIGLAATQIAETKSIM 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ ++ PMVF+NP+I+ + S + CLS+P+ ADV R + V+ D + Sbjct: 60 VIDISENRDE--PMVFVNPEIVESEGETSYQEG-CLSVPEIYADVDRFLRVKVKAYDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 + + +D LA +QHE+DHL+G +F+DHLS LKR+M Sbjct: 117 KAFEVDSDEFLAIVMQHEIDHLHGKVFLDHLSPLKRNM 154 >gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii] gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii] Length = 248 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 1/163 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ +PDP LR V+ I + +M L M+E+MY DG+GLAA Q+GV RL+V + Sbjct: 56 LQIIKYPDPRLRAVNAKINVFDESLMRLAKEMIEIMYQDDGVGLAAPQVGVNVRLMVFNP 115 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 N + +NP+I+ + +EGCLS P DV+RS I V+ +D Q Sbjct: 116 MGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQINVKALDATGQPVK 175 Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + A QHE DHL G+LF D + + + ++ L Sbjct: 176 LTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPELVAL 218 >gi|187935113|ref|YP_001885413.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187723266|gb|ACD24487.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 147 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ R +EKI+ ++ LI +MLE MY DG+GLAA Q+G+L RL + Sbjct: 1 MALRNIRKYGDSVLRKKCREVEKIDERLVTLIKDMLETMYDADGVGLAAPQVGILKRLFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + ++ V +EGCLS+P V R ++ R ++ + Sbjct: 61 VDIGEGPLVFINPEILDTDGK------QVDEEGCLSLPGKTEPVMRPNYVKARALNEKWE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A+ LLA + HE DHLNG LFID ++ Sbjct: 115 EFEIEAEELLARAILHEYDHLNGTLFIDRTTK 146 >gi|298346549|ref|YP_003719236.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304389733|ref|ZP_07371692.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315655106|ref|ZP_07908008.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315657036|ref|ZP_07909921.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236610|gb|ADI67742.1| peptide deformylase [Mobiluncus curtisii ATCC 43063] gi|304326909|gb|EFL94148.1| peptide deformylase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315490587|gb|EFU80210.1| peptide deformylase [Mobiluncus curtisii ATCC 51333] gi|315492428|gb|EFU82034.1| peptide deformylase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 164 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + DP+LR I + + L++++LE + GLAA QIGV R Sbjct: 1 MAFREIRVVGDPVLRTPCDWITDPRDPGVKQLVEDLLENVDEDGRAGLAANQIGVSLRAF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + D++ EGCLS+P KR+ + V +D + Sbjct: 61 SWNIDGEIGYVLNPKLVAM----SEDEYQDGDEGCLSVPGLFYPTKRAWYARVEGIDLDG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + ++ + L+ CLQHE DHL G L++D L R R +++ K+ Sbjct: 117 KPLVVEGEELMGRCLQHECDHLEGHLYLDKLERKYRKEALQQIRKM 162 >gi|157830807|pdb|1DEF|A Chain A, Peptide Deformylase Catalytic Core (Residues 1-147), Nmr, 9 Structures gi|256599481|pdb|2KMN|A Chain A, Solution Structure Of Peptide Deformylase Complexed With Actinonin Length = 147 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VI Sbjct: 1 SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ADGLLA C+QHE+DHL G LF+D+LS Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLS 147 >gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] Length = 156 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVMNFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|187928362|ref|YP_001898849.1| peptide deformylase [Ralstonia pickettii 12J] gi|187725252|gb|ACD26417.1| peptide deformylase [Ralstonia pickettii 12J] Length = 177 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV++P+E+ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRNILKMGDSRLLRVAKPVERFHTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDEMEEGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G+L+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGVLYPMRVKDFTR 160 >gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3] Length = 162 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI+ I + ++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDDRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD MV INPKII S+D + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDG---KMVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A C HELDHL+G+L+ D + ++ +++ +L + Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162 >gi|291277234|ref|YP_003517006.1| polypeptide deformylase [Helicobacter mustelae 12198] gi|290964428|emb|CBG40278.1| polypeptide deformylase [Helicobacter mustelae 12198] Length = 171 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 3/154 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P P+LR+ S+ ++ ++ + +D+M + M +G+GLAAVQ+G L+R+++ Sbjct: 1 MAVLEVLSYPHPLLRQKSKEVQNFDASLHAFLDDMYDTMLEREGVGLAAVQVGRLHRILL 60 Query: 61 --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-EGCLSIPDYRADVKRSAFITVRYMDC 117 I Q+ + + + + ++ EGCLS+P + +VKR IT+ Y D Sbjct: 61 VNIPRQEDGKQYKEDLLEIINPVILHQEEEIFWNEGCLSVPGFYEEVKRYGSITLGYQDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q++ A G LA LQHE+DHL GILFID LS Sbjct: 121 FGGEQVLRAQGFLAVALQHEMDHLEGILFIDKLS 154 >gi|289449949|ref|YP_003475241.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184496|gb|ADC90921.1| peptide deformylase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 160 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 93/164 (56%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58 M + +++ D LR+ +RP++ I + I ++D+M++ +Y+T +G+GLAAVQ+G+L R+ Sbjct: 1 MAVREIIVDGDDRLRKKARPVDNIADPKIQQIVDDMIDTLYATGNGVGLAAVQVGILKRI 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 VIDLQD K I QEGCLS+P + +V R A +TVR D N Sbjct: 61 FVIDLQDGKGLK----VYINPEIIDRQGSQCNQEGCLSLPGFWGEVIRPAKVTVRAFDRN 116 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKK 161 + A GL A C+ HE DHLNGILF D +S + +K Sbjct: 117 GKQFEQTATGLGAICISHETDHLNGILFKDLVISEEEAARFKQK 160 >gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107] gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107] Length = 201 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL Sbjct: 31 LEIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I S Y+EGCLSIP DV R I + Y D + + Sbjct: 91 DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ADGL+A C+QHE+DHLNG+LF+D ++ +D + K++ Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QDGLQKELK 188 >gi|91775819|ref|YP_545575.1| peptide deformylase [Methylobacillus flagellatus KT] gi|91709806|gb|ABE49734.1| Peptide deformylase [Methylobacillus flagellatus KT] Length = 177 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P+L + + P+++ + ++ LI +M + M +G G+AA QIGV R+V Sbjct: 1 MPVKPVLKMGEPLLLQKAEPVQQFDTPELHALIKDMEDTMAHLNGAGIAAPQIGVSLRVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A + V +NP + ++ EGCLS+P R V R + Sbjct: 61 IFGVGHNPRYPDAEQVPYTVLVNPTLTPIGEELEDGWEGCLSVPGMRGIVPRYQRLHYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D G A +QHE DHL+GIL+ + L Sbjct: 121 YDQYGNPIDRLVSGFHARVVQHECDHLDGILYPMRIRDL 159 >gi|33603069|ref|NP_890629.1| peptide deformylase [Bordetella bronchiseptica RB50] gi|39931041|sp|Q7WG25|DEF2_BORBR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33568700|emb|CAE34458.1| peptide deformylase [Bordetella bronchiseptica RB50] Length = 176 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A + NP I S + EGCLS+P R V R I Sbjct: 61 FGFERNDRYPDAPAVPRTILCNPVIEPLSGEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G L+ + L + Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK 160 >gi|212635128|ref|YP_002311653.1| peptide deformylase [Shewanella piezotolerans WP3] gi|212556612|gb|ACJ29066.1| Formylmethionine deformylase [Shewanella piezotolerans WP3] Length = 163 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 5/167 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD L+R + P++ I++ + ID+++E MY DGIGLAA Q+G L+ ++ Sbjct: 1 MAVLDILTIPDVRLKRKAEPVKDIDA-VQGFIDDLIETMYDTDDGIGLAATQVGSLHAIL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + R PMV INP+I+ +F +EGCLSIP YRA V R + V +D Sbjct: 60 VIDLSEE--RDQPMVLINPEIVETRGEFQG-EEGCLSIPGYRAKVNRHEGVKVTALDRTG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q I D LA LQHE+DHL GI+F DHLS LK+ + KK+ K Sbjct: 117 QAFEIDTDEFLAIVLQHEMDHLKGIVFTDHLSMLKQQIALKKVKKYK 163 >gi|256370663|ref|YP_003108488.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] gi|256009455|gb|ACU52815.1| peptide deformylase [Candidatus Sulcia muelleri SMDSEM] Length = 180 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 96/167 (57%), Gaps = 2/167 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P++I+ P+LR+ IEK ++ I +LI NM + M GIGLAA QIG+ RL Sbjct: 1 MILPILIYGHPLLRKRCLEIEKFSNSNQINSLIQNMYDTMGQAQGIGLAAPQIGISLRLF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +I+ + +K VFINPKI+ + + +EGCLS+P+ ++ R + + Y D N Sbjct: 61 IIEYNNFYKKKFKQVFINPKILKIYGSYLITKEGCLSLPNIIENIIRKNHLIIEYYDENW 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + GLL+ +QHE DH+ G F+DH+S K+ + ++ K+ Sbjct: 121 KKYKQHFHGLLSIIIQHEYDHIEGKFFLDHISDQKKLFLHNQLKKIS 167 >gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211] gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9211] Length = 201 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + LR+ ++ + K+++ I LI ML MYS GIGLAA Q+G+ +L+VIDL Sbjct: 31 LKIHTLGNLELRQTAQRVSKVDNSIRTLIKKMLHSMYSAKGIGLAAPQVGIHKQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I FS Y+EGCLSIP +V R + I + + D + + Sbjct: 91 DIENSTTPPIVLINPQITDFSAAIETYEEGCLSIPGVYLNVIRPSSIKLNFRDEMGRPKK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGLL+ C+QHE+DHLNG+LF+D ++ + ++K++ + Sbjct: 151 MNADGLLSRCIQHEMDHLNGVLFVDRVTNE--NDLSKELQE 189 >gi|150390546|ref|YP_001320595.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] gi|167012061|sp|A6TRW8|DEF_ALKMQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|149950408|gb|ABR48936.1| peptide deformylase [Alkaliphilus metalliredigens QYMF] Length = 147 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR+ SR ++KI+S I L+D+M+E MY DG+GLAA Q+G+L +++V Sbjct: 1 MAIRLIRTDDDPVLRKKSRVVDKIDSRIHTLLDDMIETMYEADGVGLAAPQVGILKQVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I EGCLS+P + +V+R A + VR ++ + Sbjct: 61 IDVGEGVIE------LINPEIIKETGSQCDVEGCLSLPGHSGEVERPAIVKVRGLNRQGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I LLA L HE+DHLNGILF D + + Sbjct: 115 MVEIQGTELLARALCHEIDHLNGILFTDKIIKE 147 >gi|313894829|ref|ZP_07828389.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976510|gb|EFR41965.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 156 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++V+ PI+++ L+D+M E MYS +G+GLAA QIG R+VV Sbjct: 1 MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYSANGVGLAAPQIGKSIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + +IT + V EGCLS+P DV+R+A +TV Y D ++ Sbjct: 61 IDVEDEHGLL----ELINPVITMREGTVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+GLLA C+QHE DHL+G LFID Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144 >gi|33862657|ref|NP_894217.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|39931000|sp|Q7V8G6|DEF1_PROMM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|33634573|emb|CAE20559.1| Formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] Length = 192 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 7/157 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ +P LR+VS ++ + +++ +LI ++ + + + G GLAA QIGV R+V Sbjct: 1 MAVKEILRMGNPQLRKVSNVVDDASDELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A + INP + D EGCLS+P R V R + I R Sbjct: 61 LFGGGGPNPRYPEAPSIPQTLLINPVLTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYR 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ + +G A +QHE DHL+G+LF D L Sbjct: 121 ALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRL 157 >gi|291563557|emb|CBL42373.1| peptide deformylase [butyrate-producing bacterium SS3/4] Length = 158 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + +P++++N + LI++M E MY +G+GLAA Q+GV R+VV Sbjct: 1 MAIRQIRTIGDEILTKECKPVKEMNERTLELIEDMFETMYENNGVGLAAPQVGVRKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + I + QEGCLS+P V R+ + + ++ N + Sbjct: 61 IDVEDGN-----QYVLINPEILETSGSQTGQEGCLSVPGKCGQVTRADHVKAKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I ADGLLA C+ HE DHL+G L++D Sbjct: 116 EYEIEADGLLARCILHECDHLDGKLYVD 143 >gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B] gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B] Length = 149 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ +E I+ LI +M++ MY DG+GLAA Q+G+L ++ V Sbjct: 1 MAIRNIRTVGDAVLRKNSKNVEVIDDRTKVLIQDMIDTMYDADGVGLAAPQVGILKKIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+VFINP+I+ + + CLSIP A+V+R + V+ ++ N + Sbjct: 61 IDIGEG-----PIVFINPEILETEGSYVDSEG-CLSIPGESAEVERPYKVKVKALNENGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 I+ + LLA + HE DHL G L+ID Sbjct: 115 EFILEGEELLARAICHENDHLYGTLYIDR 143 >gi|301632277|ref|XP_002945217.1| PREDICTED: peptide deformylase 1-like [Xenopus (Silurana) tropicalis] Length = 217 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 90/141 (63%), Gaps = 2/141 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP L +V++P+ +++ I +L+ +ML MY GIGLAA Q+ V R+VV Sbjct: 1 MAILPILCYPDPRLHQVAQPVRAVDARIQSLVSDMLATMYDAQGIGLAATQVDVHERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + R P+V INP+I+ S + V EGCLS+P V+R + + VR +D Sbjct: 61 IDTSEE--RNQPLVLINPEIVWASAEKVVRDEGCLSVPGIYDGVERCSAVHVRALDEKGA 118 Query: 121 HQIIYADGLLATCLQHELDHL 141 ++I A+GLLA C+QHE+DHL Sbjct: 119 ARVIQAEGLLAVCMQHEMDHL 139 >gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70] Length = 157 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P IL + P+++ + ++ L+++M E M DG+GLAA Q+G+ ++ V Sbjct: 1 MAILPIVTYPADILETMCEPVKQFDRQLIQLLNDMYETMIDEDGVGLAAPQVGIAKQIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + + I + + EGCLS P +VKR+ ++ VR D + Sbjct: 61 VDVGDKHGR----IELINPRIIEARGEQIGPEGCLSFPGLFGEVKRANYVKVRAQDRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A LA LQHE+DHLNGILF + Sbjct: 117 VFTLEATEFLARALQHEIDHLNGILFTSKV 146 >gi|161833710|ref|YP_001597906.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] gi|189083080|sp|A8Z5V9|DEF_SULMW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|152206200|gb|ABS30510.1| peptide deformylase [Candidatus Sulcia muelleri GWSS] Length = 189 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++I+ + LR+ I+K DI LI+NM + MY GIGL+A QIG+ RL +I Sbjct: 1 MILPIIIYGNSFLRKKCIEIDKSYKDINFLINNMYDTMYQAKGIGLSAPQIGLSIRLFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +K VFINP II + +EGCLSIP+ ++KR I + Y D N + Sbjct: 61 EYNNFLKQKFKKVFINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 + +GLL+ +QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 121 YKQHFNGLLSIIIQHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 176 >gi|163790824|ref|ZP_02185249.1| peptide deformylase [Carnobacterium sp. AT7] gi|159873892|gb|EDP67971.1| peptide deformylase [Carnobacterium sp. AT7] Length = 164 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PDP+L ++ + +I +I+ L+++M E M + DGIG+AA Q+ RL + Sbjct: 1 MSVLPILKYPDPMLITPTKEVTEITDEIVQLLEDMYETMVANDGIGIAAPQVNSNLRLAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + + I + ++ EGCLS P+ +KR+ I +RY D N Sbjct: 61 VEIDEESGL----YEMINPRIVHATGETIDVEGCLSFPEVFGTIKRADTIVLRYYDRNGD 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + AD L+ QHEL+HL+G LF D + Sbjct: 117 EFEVEADDYLSRAFQHELEHLDGKLFTDKI 146 >gi|299067454|emb|CBJ38653.1| Peptide deformylase [Ralstonia solanacearum CMR15] Length = 177 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+ + ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAKPVLRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INP I SD EGCLS+P R V R + Sbjct: 61 FGFDRNDRYPDAPAVPKTVLINPTIEPLSDTMEDGWEGCLSVPGLRGVVPRYTRVRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL GIL+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVQDFTR 160 >gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 189 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 90/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ + K++ +I L ML+ MYS DGIGLAA Q+ V +L+V+D Sbjct: 17 LNIHTLGDRVLRQSAKRVSKVDDEIRELARQMLQTMYSADGIGLAAPQVAVGKQLIVVDT 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ +NPKI SDD ++ QEGCLSIP DV+R A I V Y D + Q+ Sbjct: 77 DPEEPANQPIILLNPKIRRHSDDLALGQEGCLSIPGVYLDVRRPAQIEVAYKDEQGRPQV 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LLA +QHE+DHL G++F+D + Sbjct: 137 IVATDLLARVIQHEMDHLTGVMFVDRVE 164 >gi|313901452|ref|ZP_07834909.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313468280|gb|EFR63737.1| methionyl-tRNA formyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 540 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 6/151 (3%) Query: 4 KPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V +P+LR ++P+ ++ +I L+D M MY+ DGIGLAA Q+GV R++V+D Sbjct: 24 LPIVKGADEPVLRTPAQPVARVTREIRQLLDRMAATMYAADGIGLAAPQVGVSKRVIVVD 83 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + D + INP+I+ ++ EGCLS+P A+V+R + V +D + Sbjct: 84 VGDG-----LIELINPEIVRRGEEVEAAYEGCLSLPRLLAEVERPTSVQVTGLDRRGRRI 138 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I +G+LA CLQHE+DHL+G+L D ++ Sbjct: 139 WIEGEGVLARCLQHEIDHLDGVLITDRARKV 169 >gi|325923638|ref|ZP_08185267.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] gi|325545882|gb|EGD17107.1| peptide deformylase [Xanthomonas gardneri ATCC 19865] Length = 171 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELRTLVADMFETMDDARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFEASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|225028093|ref|ZP_03717285.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] gi|224954563|gb|EEG35772.1| hypothetical protein EUBHAL_02363 [Eubacterium hallii DSM 3353] Length = 158 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP L +V +P++KI I LI++M + MY G+GLAA Q+G+L R+ V Sbjct: 1 MAIRKIRFIGDPCLNKVCKPVQKITPSIETLIEDMFDTMYEARGVGLAAPQVGILRRICV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + I + +EGCLSIP A V R+ ++ V+ D Sbjct: 61 IDVMDEDP-----IILINPEIIETAGEQTDEEGCLSIPGKCASVTRADYVKVKSFDMELN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 II +GL A LQHE+DHL+G+L+ + + Sbjct: 116 PVIIEGEGLRARALQHEIDHLDGVLYGERAN 146 >gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192] gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192] Length = 163 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L D ILR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + + Sbjct: 2 ELRYLGDEILRKRAVLVPEIDGRVARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + Sbjct: 62 E----GEPLVFINPEITATSPELTTFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADG+LA +QHE DHLNG+LF+D L KR+ + + Sbjct: 118 EADGMLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237] gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237] Length = 196 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+V I K + L++NM E MY+ G+GLAA QIG+ RL VI Sbjct: 1 MILPIIAYGDPVLRKVGTDIAKDYPKLETLVENMWETMYNASGVGLAAPQIGLPIRLFVI 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + VF+N KI + + + EGCLSIPD R DV R Sbjct: 61 DTTPFSEDEDLSPEDQKALDGFKKVFVNAKIEEETGEEWNFNEGCLSIPDVREDVNRKET 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y+D N + GLLA +QHE DH+ GILF D LS LK+ ++ K+S + + + Sbjct: 121 IKITYLDENFNEKSESYGGLLARVIQHEYDHIEGILFTDKLSSLKKRLLKGKLSNISKGK 180 >gi|304437066|ref|ZP_07397029.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370017|gb|EFM23679.1| peptide deformylase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 160 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VV Sbjct: 5 MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + +IT + EGCLS+P DV+R+ +TV Y D ++ Sbjct: 65 IDVQDEHGLLELV----NPVITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + A+GLLA C+QHE DHL G LFID RL++ Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRK 155 >gi|261856616|ref|YP_003263899.1| peptide deformylase [Halothiobacillus neapolitanus c2] gi|261837085|gb|ACX96852.1| peptide deformylase [Halothiobacillus neapolitanus c2] Length = 166 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M ++ +PD L+ P++ N ++ + ID+++E G +G+AA Q+GVL R+ Sbjct: 1 MASLEILTYPDERLKTGCEPVDTFNPEMQSFIDHLIETCSGGPGAVGIAAPQVGVLQRIC 60 Query: 60 VID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++D + + + IT D F+V +EGCLS+PDY V R+ I ++ D Sbjct: 61 IVDATRARRPVDNHGHLVLINPEITAWDGFAVGREGCLSVPDYTGKVIRAEKIELKAQDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156 N + G A QHE+DHL+GILF+D L + LKR Sbjct: 121 NGKPCTFTMSGFEARIAQHEVDHLDGILFLDRLVSRHADLKRR 163 >gi|33591309|ref|NP_878953.1| peptide deformylase [Bordetella pertussis Tohama I] gi|33598175|ref|NP_885818.1| peptide deformylase [Bordetella parapertussis 12822] gi|39931029|sp|Q7W0Q0|DEF1_BORPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|39931034|sp|Q7W4K0|DEF2_BORPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33566733|emb|CAE38944.1| peptide deformylase [Bordetella parapertussis] gi|33570951|emb|CAE40418.1| peptide deformylase [Bordetella pertussis Tohama I] Length = 176 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LID+M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A + NP I SD+ EGCLS+P R V R I Sbjct: 61 FGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G L+ + L + Sbjct: 121 DPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK 160 >gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048] gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603] gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621] gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621] gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196] gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603] gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048] Length = 156 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 ++ AD LA +QHE+DHL+G+LF S++KR Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFT---SKVKR 148 >gi|150018308|ref|YP_001310562.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|149904773|gb|ABR35606.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] Length = 150 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D +LR+ S+ +E ++ I ++D+M+E MY+ +G GLAA QIG+L RLV Sbjct: 1 MALRKIRLFGDEVLRKKSKEVEVVDEKIRQILDDMVETMYNTENGGGLAAPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLS P + R +TV+ +D N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGSQEVIEGCLSNPHVFGRLLRPEKVTVQALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 KEIILTGTGDLAKCFCHEIDHLEGILFTDFVT 146 >gi|323699398|ref|ZP_08111310.1| peptide deformylase [Desulfovibrio sp. ND132] gi|323459330|gb|EGB15195.1| peptide deformylase [Desulfovibrio desulfuricans ND132] Length = 165 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ + +PD +L + PI +I ++ LI+NM++ MY +DG+GLAA Q+ RL+ + Sbjct: 1 MRLEICTWPDEVLEAKAEPITEITPELDELIENMVQTMYESDGVGLAAPQVNQSIRLICV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + V INP+I+ + + CLS P+ V+R + V+ ++ + + Sbjct: 61 DQTGPKERGDLRVLINPEIVECDGEVESDEG-CLSCPELNLKVRRKERVKVKALNRSGKE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA LQHE+DHL G+ D RLK+ M KK + + Sbjct: 120 ICVETGGLLAIILQHEIDHLEGVTLADRSGRLKKAMYRKKALRWKR 165 >gi|311742536|ref|ZP_07716345.1| peptide deformylase [Aeromicrobium marinum DSM 15272] gi|311314164|gb|EFQ84072.1| peptide deformylase [Aeromicrobium marinum DSM 15272] Length = 203 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P+ + P++ R + + D+ L+ +M+ MY+ +G+GLAA Q+GV ++ V Sbjct: 14 SVRPITRWGTPVMHRELADVTTFDEDLRVLVRDMVATMYAANGVGLAANQVGVDLKVFVF 73 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP EGCLS+P R V D + Sbjct: 74 DCPDEDSERVTGVVCNPVLTLPALGDRRLDDDDEGCLSLPGAFTTCARPDAAHVSGFDEH 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + GLLA CLQHE DHL G +F D + R + K Sbjct: 134 GEPVEFTGSGLLARCLQHETDHLFGTVFGDRVPERSRKKLYK 175 >gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241] gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241] Length = 156 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETSCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|146297087|ref|YP_001180858.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410663|gb|ABP67667.1| peptide deformylase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 164 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + I+ D ILR+ S+ +EK + + +L+D+M E MY +GIGLAA Q+G+L R +V+D Sbjct: 1 MRKIRIYEDEILRKKSKTVEKFDKRLHDLLDDMKETMYEANGIGLAAPQVGILKRAIVVD 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D A I +S+ + EGCLS+P+ +V+R + VR + + + Sbjct: 61 PGDGAIELVNPQ------IEYSEGSQIDIEGCLSVPNVWGEVERPKKVIVRGQNRHGEEI 114 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL-KRDMITKKMSKLVQL 168 I A+ LLA L HE+DHL+GILFID + R + + KK SK ++ Sbjct: 115 KIEAEDLLARALCHEIDHLDGILFIDKVIRFVTEEEVEKKRSKGQKM 161 >gi|111019169|ref|YP_702141.1| peptide deformylase [Rhodococcus jostii RHA1] gi|110818699|gb|ABG93983.1| peptide deformylase [Rhodococcus jostii RHA1] Length = 196 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I DP+L + + + +++ +I +M + M + +G+GLAA Q+G+ RL V Sbjct: 1 MAILPIRIVGDPVLHEPTEAVSQSPAELAEIIADMYDTMDAANGVGLAANQVGLPLRLFV 60 Query: 61 IDLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 D D V + D EGCLS+P + R+ + Sbjct: 61 YDCPDVDGDGKALRRRGCVVNPVLETSERPETMPDPDDDVEGCLSVPGEQFPTGRAEWAK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D + I G A LQHE+ HL+G L++D L K + + Sbjct: 121 VTGTDADGNAVEIEGHGFFARMLQHEVGHLDGFLYVDMLVGRNARAAKKTIKR 173 >gi|238926274|ref|ZP_04658034.1| peptide deformylase [Selenomonas flueggei ATCC 43531] gi|238885954|gb|EEQ49592.1| peptide deformylase [Selenomonas flueggei ATCC 43531] Length = 160 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++ + PIE++ L+D+M E MY+ DG+GLAA Q+G R+VV Sbjct: 5 MAILDIKKAGDPVLKQTAEPIERLTKRHRQLLDDMAETMYAADGVGLAAPQVGKSLRIVV 64 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD + +IT + EGCLS+P DV+R+ +TV Y D ++ Sbjct: 65 IDVQDEHGLLELV----NPVITMREGSVTESEGCLSVPKVYGDVERAERVTVEYTDRRSR 120 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + A+GLLA C+QHE DHL G LFID RL+++ Sbjct: 121 RRTLTAEGLLARCIQHECDHLEGRLFIDIAVRLRKE 156 >gi|207743249|ref|YP_002259641.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] gi|206594646|emb|CAQ61573.1| peptide deformylase 2 (pdf 2) (polypeptide deformylase2) protein [Ralstonia solanacearum IPO1609] Length = 177 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL GIL+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFTR 160 >gi|56419706|ref|YP_147024.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|56379548|dbj|BAD75456.1| polypeptide deformylase [Geobacillus kaustophilus HTA426] Length = 157 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ P+PIL + P+ + + L+D+M E M + DG+GLAA QIGV ++ V Sbjct: 1 MAVLSIVMHPNPILEQPCAPVTIFDRRLGRLLDDMYETMLAADGVGLAAPQIGVAEQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + INP +I + + CLS P +V R+ F+ VR + + Sbjct: 61 VDVGDEHGR---IELINPVVIEARGEQVDVEG-CLSFPGLFGEVPRAKFVKVRAQNRRGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA LQHE+DHL+G+LF + Sbjct: 117 PFTLSATGFLARALQHEIDHLHGVLFTSKV 146 >gi|254247880|ref|ZP_04941201.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] gi|124872656|gb|EAY64372.1| Formylmethionine deformylase [Burkholderia cenocepacia PC184] Length = 177 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ + EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYLPPEMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|222824460|ref|YP_002576034.1| peptide deformylase [Campylobacter lari RM2100] gi|222539681|gb|ACM64782.1| peptide deformylase [Campylobacter lari RM2100] Length = 173 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 4/159 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S +E + D+ L+D+M E M G+GLAA+Q+ V R +++ Sbjct: 1 MIRKIITYPNPRLFLESEKVENFDKDLHVLLDDMYETMIENKGVGLAAIQVDVPIRALLV 60 Query: 62 DLQDHAHRKNPMV----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 D+ D + INP I D+ EGCLSIP + DV R I + Y D Sbjct: 61 DIGDEEGEQKDKQTLLEIINPIITPLDDEKISCNEGCLSIPGFYEDVMRYKNIQLDYQDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + Q + A LA +QHE+DHL+G LFI+ LS LKR Sbjct: 121 FGKPQSLQAHDFLAVAIQHEVDHLDGHLFIEKLSFLKRQ 159 >gi|254431098|ref|ZP_05044801.1| peptide deformylase [Cyanobium sp. PCC 7001] gi|197625551|gb|EDY38110.1| peptide deformylase [Cyanobium sp. PCC 7001] Length = 180 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +P++ DP LR+V+ + + + ++ L+D++ + M + DG GLAA QIGV R Sbjct: 1 MAIRPVLRLGDPFLRQVAVAVPRQAIGSPELSALLDDLRDTMAARDGAGLAAPQIGVALR 60 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +V+ A V INP + S EGCLS+P R V R I Sbjct: 61 VVIFGFTTNPRYPEAPPIPDTVLINPVLTPLGSARSSGWEGCLSVPGLRGLVPRWDRIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + +G A +QHE DHL+G+LF D + Sbjct: 121 TGLDEQGRPLQREVEGFHARVVQHECDHLDGVLFPDRIED 160 >gi|154497980|ref|ZP_02036358.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] gi|150272970|gb|EDN00127.1| hypothetical protein BACCAP_01960 [Bacteroides capillosus ATCC 29799] Length = 175 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ DP+L + + + + + L+D+M+E + + G+GLAA QIG+L R+VV Sbjct: 12 MALRTIITKGDPVLSKKAHLVTNFDEKLAILLDDMVETLRDSGGVGLAAPQIGILRRVVV 71 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + +NP+II + ++ CLS+P V R V+ + + Sbjct: 72 VINDEDQVIE----LVNPEIIATEGEQVGFEG-CLSVPGRWGKVARPMKARVKAQNRQGE 126 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + +GL A C HELDHL+G LF + +L Sbjct: 127 WFEVEDEGLTARCFCHELDHLDGHLFTELTDKL 159 >gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab] Length = 175 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L DPIL +V+ P+ + + NLI+ ML + G+GLAA Q+G +++ Sbjct: 1 MTLR-LRQLGDPILTQVAEPVAEFGTPALQNLIEEMLATLKEAQGVGLAAPQVGFPLQVI 59 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ A + P+V +NP+ + S++ + EGCLS+P+ R V RS + V Y Sbjct: 60 IVASRPNPRYPDAPQMEPLVMVNPRPLACSEEQVLGWEGCLSVPNCRGLVARSREVEVEY 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q + A QHE DHL G LF+D Sbjct: 120 HTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154 >gi|21222943|ref|NP_628722.1| polypetide deformylase [Streptomyces coelicolor A3(2)] gi|256785943|ref|ZP_05524374.1| polypetide deformylase [Streptomyces lividans TK24] gi|289769835|ref|ZP_06529213.1| polypeptide deformylase [Streptomyces lividans TK24] gi|8134401|sp|Q9XAQ2|DEF3_STRCO RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|5042279|emb|CAB44533.1| putative polypetide deformylase [Streptomyces coelicolor A3(2)] gi|289700034|gb|EFD67463.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 208 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + +L R R + + D+ LID+M MY +G GLAA Q+GV RL V Sbjct: 25 AVRRVTEVGEEVLHRPCRDVTEFGPDLAALIDDMFRTMYVAEGAGLAANQVGVDLRLFVY 84 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP + + CLS+P V R VR +D + Sbjct: 85 DCPDDEGVRHVGHLVNPVLDALDPAARRLLDEGEGCLSVPGAVMAVPRPDRAVVRGLDKD 144 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 ++ G A CL HE DH+NG +++D LS +R ++ Sbjct: 145 GVPLLVEGTGYFARCLAHETDHVNGHVYLDRLSGRERKAALRQ 187 >gi|107028797|ref|YP_625892.1| peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116690044|ref|YP_835667.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|170733379|ref|YP_001765326.1| peptide deformylase [Burkholderia cenocepacia MC0-3] gi|105897961|gb|ABF80919.1| Peptide deformylase [Burkholderia cenocepacia AU 1054] gi|116648133|gb|ABK08774.1| peptide deformylase [Burkholderia cenocepacia HI2424] gi|169816621|gb|ACA91204.1| peptide deformylase [Burkholderia cenocepacia MC0-3] Length = 177 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L +++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYLPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|241764867|ref|ZP_04762871.1| peptide deformylase [Acidovorax delafieldii 2AN] gi|241365616|gb|EER60346.1| peptide deformylase [Acidovorax delafieldii 2AN] Length = 197 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L R+++P++K + ++ LI +MLE M + G GLAA QIGV ++V Sbjct: 19 MTIHSILKMGDPRLLRIAQPVQKFDTPELHQLIRDMLETMRAAQGAGLAAPQIGVDLQVV 78 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P V +NP I +D EGCLS+P R V R I Sbjct: 79 IFGSNEPNRRYPDRPLVPPTVLVNPVITPLGEDEEEDWEGCLSVPGLRGKVPRWLHIRYS 138 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D + A+G A +QHE DHL G L+ + Sbjct: 139 GFDAHGSPIDRVAEGFHARVVQHECDHLMGKLYPMRVRDF 178 >gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM 13528] Length = 152 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ SR +E+IN I L+D+M E +Y DG+GLAA Q+GVL R++V Sbjct: 1 MALRTVRKYGDSILRKKSRKVEEINERIHVLLDDMEETLYEEDGVGLAAPQVGVLKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + EGCLSIP +V+R + V+ ++ + Sbjct: 61 IDVGEGILKLVNPEITYSEGKAVDI------EGCLSIPGSEGEVERPKKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +I + LLA L HE+DHLNGILFID + + Sbjct: 115 EIVIEGEDLLARALCHEIDHLNGILFIDKIIK 146 >gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803] gi|2499924|sp|P73441|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803] Length = 187 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 1/159 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ I L ML+ MYS +GIGLAA Q+G+ +L+V+D Sbjct: 17 LELHYLGDKVLRQPAKRIAKVDDSIRKLAKEMLQTMYSANGIGLAAPQVGINKQLLVVDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + P++ INP+I S++ V +EGCLS+P+ DV R I V Y D + + Q Sbjct: 77 EQDKPDEPPLIMINPQITRTSEELCVVEEGCLSVPNVYMDVTRPRAIEVTYKDEHGRPQK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKK 161 L A +QHE+DHLNG++F+D + + L KK Sbjct: 137 RLFAELTARVIQHEMDHLNGVMFVDRVDNPLALAESLKK 175 >gi|167768544|ref|ZP_02440597.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|317498700|ref|ZP_07956992.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710068|gb|EDS20647.1| hypothetical protein CLOSS21_03103 [Clostridium sp. SS2/1] gi|291560506|emb|CBL39306.1| peptide deformylase [butyrate-producing bacterium SSC/2] gi|316894042|gb|EFV16232.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ + ++++ + L+++M + MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRQIRVLGDDVLRKKCKEVKEMTPRMHTLVEDMYDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + +IT + V +EGCLS+P A VKR + D + Sbjct: 61 IDTGEEGECVTLV----NPVITLKEGEQVGEEGCLSLPGKVAVVKRPDHVICEAFDEDMN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + GL A L HE DHL+GIL+ D RD+ +++ Sbjct: 117 PITVEGFGLFARALCHETDHLDGILYPDVAEEPARDVTMEEVE 159 >gi|225628893|ref|ZP_03786927.1| peptide deformylase [Brucella ceti str. Cudo] gi|225616739|gb|EEH13787.1| peptide deformylase [Brucella ceti str. Cudo] Length = 214 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 62/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 51 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 110 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L A K +INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 111 LELDRAAGSKI---YINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 167 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 168 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 214 >gi|315185956|gb|EFU19720.1| peptide deformylase [Spirochaeta thermophila DSM 6578] Length = 163 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 L D LR+ + + +I+ + +++ M ++M+ +GIGLAA Q+G+ R + + Sbjct: 2 ELRYLGDETLRKRAVLVPEIDGRLARVVEGMFDLMHEANGIGLAAPQVGISQRFFICHVP 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + P+VFINP+I S + + ++EGCLSIP ADV R A + V + + + Sbjct: 62 E----GEPLVFINPEITATSPELATFEEGCLSIPQIYADVVRPAAVEVSAWNLQGKPFRM 117 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ADGLLA +QHE DHLNG+LF+D L KR+ + + Sbjct: 118 EADGLLARVIQHEFDHLNGVLFLDRLPSKKRERLEQ 153 >gi|124516548|gb|EAY58056.1| Peptide deformylase [Leptospirillum rubarum] gi|206603377|gb|EDZ39857.1| Peptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 184 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +PILR+++ PI + +D+M+E M +DG+GLAA Q+ V + Sbjct: 1 MALLKIAKMGNPILRKIAEPISPKEIETDEFQTFVDDMIETMRDSDGLGLAAPQVHVSKQ 60 Query: 58 LVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VVI+ ++ + NP S + EGCLS+ + R V RS + + Sbjct: 61 VVVIESMENDRYPDAPPIPLLVLINPVFKYMSKETRTGWEGCLSVDNLRGKVTRSRAVKM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D + + + A LQHE DHL G LF+D + + ++ K Sbjct: 121 EALDRHGNTITLEWEDFPAVVLQHETDHLRGHLFLDRMKDMSTLTQLEEFQK 172 >gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 158 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M + DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVILLKDMYETMVAADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 IDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERAEYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 IFLLEANGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701] gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701] Length = 201 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 87/150 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ ++ I K++ + L NML MYS GIGLAA Q+GV +++VIDL Sbjct: 31 LTIHRLGDQVLRQSAKRISKVDESVRELARNMLRSMYSAHGIGLAAPQVGVHKQVLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 PMV +NP+I S + Y+EGCLSIP V R + V Y D + + Sbjct: 91 DPENPATPPMVLVNPEINATSAALNTYEEGCLSIPGVYLSVVRPSEAEVSYRDEQGRPRR 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ADGLLA C+ HE+DHL G+LF+D +S Sbjct: 151 IKADGLLARCILHEMDHLKGVLFVDLVSDE 180 >gi|300704236|ref|YP_003745839.1| peptide deformylase [Ralstonia solanacearum CFBP2957] gi|299071900|emb|CBJ43229.1| Peptide deformylase [Ralstonia solanacearum CFBP2957] Length = 177 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MIRPILKMGDSRLLRVAQPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I SD+ EGCLS+P R V R + Sbjct: 61 FGFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL GIL+ + R Sbjct: 121 DQHGHAIDRIAEGFHARVVQHECDHLQGILYPMRVRDFSR 160 >gi|239815924|ref|YP_002944834.1| peptide deformylase [Variovorax paradoxus S110] gi|239802501|gb|ACS19568.1| peptide deformylase [Variovorax paradoxus S110] Length = 179 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + ++ L+ +M E M + +G GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAQPVAAFDTDELHLLVRDMFETMLAVNGAGLAAPQIGVDQQLV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + A V +NP I D+ EGCLS+P R V R A I Sbjct: 61 IFGTDVVNPRYPDAPPVPRTVLLNPVITPIGDEEEEGWEGCLSVPGLRGVVPRFANIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A G A +QHE+DHL G L+ + R Sbjct: 121 GFDPYGDPIDRVASGFHARVVQHEVDHLLGKLYPMRVRDFSR 162 >gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102] gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102] Length = 187 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 93/148 (62%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ ++ ++ ML+ MYS DGIGLAA Q+G+ +L+VIDL Sbjct: 17 LELHYLGDRVLRQAAKRISKVDDELRQMVREMLQTMYSKDGIGLAAPQVGIHKQLIVIDL 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S D SV +EGCLSIP+ DVKR + + Y D + + Sbjct: 77 EPENAANPPLVLINPTIKQVSRDISVAEEGCLSIPNVYLDVKRPEVVEIAYKDEYGRPRT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A+ LL C+QHE+DHLNG++F+D + Sbjct: 137 LKANDLLGRCIQHEMDHLNGVVFVDRVE 164 >gi|206560457|ref|YP_002231221.1| peptide deformylase [Burkholderia cenocepacia J2315] gi|198036498|emb|CAR52395.1| putative deformylase [Burkholderia cenocepacia J2315] Length = 177 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+E+ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVAQPVERFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPKI D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGQKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|320530181|ref|ZP_08031251.1| peptide deformylase [Selenomonas artemidis F0399] gi|320137614|gb|EFW29526.1| peptide deformylase [Selenomonas artemidis F0399] Length = 156 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+L++V+ PI+++ L+D+M E MY+++G+GLAA QIG R+VV Sbjct: 1 MAVLEIKKAGDPVLKQVAEPIDRLTKRHRQLLDDMAETMYASNGVGLAAPQIGKSIRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + +IT + V EGCLS+P DV+R+A +TV Y D ++ Sbjct: 61 IDVEDEHGLLELV----NPVITMREGSVVGSEGCLSVPKMFGDVERAARVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+GLLA C+QHE DHL+G LFID Sbjct: 117 RRSLTAEGLLARCIQHECDHLDGRLFID 144 >gi|312796239|ref|YP_004029161.1| peptide deformylase [Burkholderia rhizoxinica HKI 454] gi|312168014|emb|CBW75017.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI 454] Length = 177 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L R+++P+++ N ++ LI +M E M + +G GLAA QIGV ++V+ Sbjct: 1 MIHEILKMGDPRLLRMAKPVDRFNTPELHQLIQDMFETMRAANGAGLAAPQIGVDLQVVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP I S D EGCLS+P R V R + I Sbjct: 61 FGFGQNARYPDAPAVPETVLINPMITPVSLDMEEGWEGCLSVPGLRGIVSRLSMIRYEGH 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D Q A+G A +QHE DHL G L+ ++ Sbjct: 121 DQYGQPIDRIAEGFHARVVQHECDHLIGRLYPMRITDF 158 >gi|294102012|ref|YP_003553870.1| peptide deformylase [Aminobacterium colombiense DSM 12261] gi|293616992|gb|ADE57146.1| peptide deformylase [Aminobacterium colombiense DSM 12261] Length = 164 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 6/162 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +PDP+LR+ + I+ +S +M+LI+ M +M +DG+GLAA Q+GV +L ++ + Sbjct: 6 IRTYPDPVLRKETEAIDLFDSKLMDLIEEMKVIMLESDGVGLAAPQVGVSKKLAIVYYDE 65 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + I+ +D V +EGCLS P +V R + + + + + I Sbjct: 66 TL------YVLINPILLKADGEQVSEEGCLSFPGIFGNVLRPRHVVIEAYNEHGEKLTIE 119 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ LA HE+DHL G L IDH S LK+++I K+M + + Sbjct: 120 AEDFLARAFLHEMDHLEGRLLIDHFSPLKKNIIRKRMRQHAK 161 >gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 186 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 89/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D LR+ ++ + ++++I L+ ML+ MYS +GIGLAA Q+ V +++V+D Sbjct: 17 LTIHTLGDRALRQPAKRVASVDAEIRQLVREMLQTMYSAEGIGLAAPQVAVQKQVIVVDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I +S + V+QEGCLSIP +VKR I V Y D + Q Sbjct: 77 EPDNAANPPLVLINPSIKKYSGEVCVFQEGCLSIPGVYLEVKRPEAIEVFYRDEYGRPQT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL+ +QHE+DHLNG+LF+D + Sbjct: 137 LKATELLSRAIQHEMDHLNGVLFVDRVE 164 >gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645] gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645] Length = 194 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 1/151 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +V +P P LR S+P++++++D+ ++ M E+MY GIGLAA Q+ + RL + Sbjct: 1 MPLEVVHYPHPTLRYQSKPVKRVDADLRKIVAEMFELMYENRGIGLAANQVDLPIRLF-V 59 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +I+ +EGCLS+P VKR A I + + Sbjct: 60 ANLSGTKGEGEELVFINPVISRPKGNEEEEEGCLSLPQVFGPVKRPAEIQFDAYNLQGEL 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 DG+LA +QHE DHL+GI+F D + Sbjct: 120 FSQRIDGMLARVVQHETDHLDGIMFFDRMQP 150 >gi|295395930|ref|ZP_06806115.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971203|gb|EFG47093.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 164 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 6/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F DP+LR V P+ + + L ++L+ +AA QIGV R Sbjct: 1 MANRTIRTFGDPVLRTVCEPVTQFGESTVALAQDLLDTAAPEGRAAVAAPQIGVAVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL + + EGCLS+P R F TV +D + Q Sbjct: 61 YDLHGRRGVVFNPEVVTR------GERRDIDEGCLSVPGLFFPTPRYEFATVHGVDEHGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + DG+ A LQHE DHLNG++++ L +R +++ Sbjct: 115 PIEVSGDGVFAQMLQHETDHLNGVVYVQTLPSERRKEAMRQIR 157 >gi|323701801|ref|ZP_08113472.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] gi|323533337|gb|EGB23205.1| peptide deformylase [Desulfotomaculum nigrificans DSM 574] Length = 151 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D ILR+ ++P++++ +I+ L+DNM + MY+ G+GLAA QIGV R+VV Sbjct: 1 MAVYQIVEIGDEILRQKAKPVKEVTLNIIKLLDNMADTMYANKGVGLAAPQIGVSKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + EGCLS+P +V R+ I V+ ++ + Sbjct: 61 VDVGDGLVELINPEIVEATGSVIDT------EGCLSVPGMIGEVARAERIVVQGLNRKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A G LA QHE+DHL+GI+++D L++ Sbjct: 115 QVTYQAKGFLARAFQHEIDHLDGIIYVDKAKNLRK 149 >gi|146276206|ref|YP_001166365.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] gi|145554447|gb|ABP69060.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025] Length = 163 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 1/147 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +PDP L + P + L +ML MY G GLAA Q+G + RL V Sbjct: 1 MAVRPILRWPDPRLSQPCAP-AVPGPALEELASDMLATMYHAQGRGLAAPQVGEMVRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D P VF+NP+I+ S + EGCLSI R V R+ I +R+ Sbjct: 60 MDTVWKDGPAEPQVFVNPEILWMSGERVEGPEGCLSIAGPRLTVARAPEIRLRWTSLFGA 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 Q G A C QHE+DHL+GI+ + Sbjct: 120 EQEALLSGFAAICAQHEIDHLDGIVIL 146 >gi|330994009|ref|ZP_08317939.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] gi|329758955|gb|EGG75469.1| Peptide deformylase 2 [Gluconacetobacter sp. SXCC-1] Length = 180 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L + +R + + L+ +M+E M G GLAA Q+ RL Sbjct: 5 MTLLKIARMGHPVLLQPARAVTDPQAPALRTLVADMIETMLDAQGAGLAAPQVHHGLRLF 64 Query: 60 VIDLQD------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + P INP + + EGCLSIP R V R I R Sbjct: 65 VYQVPPGRSAGEDDPPCPPAALINPVLDPVDTEMVDRLEGCLSIPGMRGWVPRYRRIAYR 124 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 ++ Q A G LA LQHE DHL+GIL+ + L R +M++ Sbjct: 125 GINGQGQPVHGVASGFLANVLQHEYDHLDGILYPMRMPDLGRMGFDSEMAR 175 >gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4] gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4] Length = 162 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI++ I + ++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDNRIKQIAEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD MV INPKII S+D + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDG---KMVLINPKIIEKSEDKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A C HELDHL+G+L+ D + ++ +++ +L + Sbjct: 118 TQRVTGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162 >gi|325290451|ref|YP_004266632.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324965852|gb|ADY56631.1| peptide deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 150 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V + ILR ++ ++KI +I+ L++N+ + +Y++ G+GLAA QIG+ R+ V Sbjct: 1 MAVYQIVKMGEDILREKAQEVKKITPNILKLLENLTDTLYASQGVGLAAPQIGISKRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D V I +EGCLSIP + +VKRSA + V+ D Sbjct: 61 VDIGDGLFELINPVIIERYGEEI------DKEGCLSIPGIQGEVKRSAKVVVQCQDREGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 +G LA QHE+DHL+G+LF+D Sbjct: 115 LVQYAGEGFLARAFQHEIDHLDGVLFVD 142 >gi|294853733|ref|ZP_06794405.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] gi|294819388|gb|EFG36388.1| polypeptide deformylase [Brucella sp. NVSL 07-0026] Length = 184 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V +PDP LR + P+ + + L D++L+ M + GIG+ A IG+ R+VV Sbjct: 21 MTVRLIVKYPDPRLRAAAEPVTTFDEGLRKLADDLLDTMCAAPGIGITAPHIGISKRVVV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + P ++INP+I+ ++ +QEG +S+P +V+R A I +RY D + Sbjct: 81 L---ELDRAAGPKIYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +DGLLA C QHE+D L+GI ++ LSRL+R+ + K+ KL + Sbjct: 138 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLRRERLIKRYEKLQR 184 >gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 190 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 88/161 (54%), Gaps = 11/161 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F DP+LR+V + I+K + LIDNM E MYS +GIGLAA QIG+ RL VI Sbjct: 1 MILPIRAFGDPVLRKVGKDIDKDYPGLQELIDNMFETMYSANGIGLAAPQIGLDIRLFVI 60 Query: 62 DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D+ + VFIN +I+ S + + EGCLSIPD R DVKR I Sbjct: 61 DVTPLAEDEDYEDIKDELAEFKKVFINAQILEESGEEWKFNEGCLSIPDVREDVKRKGTI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y D N + A +QHE DH+ GILF DHLS Sbjct: 121 VIEYYDENFVKHTETFSDIRARVIQHEYDHIEGILFTDHLS 161 >gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110] Length = 202 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 3/170 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ +P+L +V++P++ +++++ I++M E MY+ DGIGLAA Q+G RL+V Sbjct: 19 MSILPVYTLGEPVLNKVAKPLKGVDAEMKQFIEDMFETMYNADGIGLAAPQVGKSLRLLV 78 Query: 61 ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D + + + P+V INP+I+ S +EGCLS+P +V R IT++Y D + Sbjct: 79 VDVSVMEDYQDEKPLVVINPQILETKGL-STMEEGCLSVPGVHEEVTRPKQITLKYRDAD 137 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ DG++A LQHE++HL G LFID+L R + +++ + Sbjct: 138 FVERVEIYDGMMARVLQHEIEHLQGNLFIDNLDAKTRRLHREELDAIKNG 187 >gi|188574933|ref|YP_001911862.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519385|gb|ACD57330.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 152 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 3/139 (2%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 L+D+M + MY GIGLAA Q+ V R +VID+ D + P VF+NP+I++ + Sbjct: 14 QALLDDMFQTMYEAPGIGLAASQVDVHKRFMVIDVSDEKNL--PQVFVNPEIVSKQGEQL 71 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + CLS+P ADV R+ ITVRY+D Q Q ++ADGLLA C+QHE+DHL+G LF+D Sbjct: 72 CQEG-CLSVPGIYADVSRADAITVRYLDRQGQAQELHADGLLAVCIQHEMDHLDGKLFVD 130 Query: 149 HLSRLKRDMITKKMSKLVQ 167 +LS LKR+M+ KK++K + Sbjct: 131 YLSPLKREMVRKKLAKQRK 149 >gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 162 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 92/166 (55%), Gaps = 6/166 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + I+ +L +V+ P++ I +++ ++D M+ ++ G+GLAA Q+G+ R V++ Sbjct: 2 EIQIYGKTVLAQVAEPVDTITPELLAILDEMVPMLKEHRGVGLAAPQVGIGKRFFVMNPG 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D R INP+I+ + FS +EGCLS+P V+R ITVRY + + Sbjct: 62 DKVRR-----VINPEIMKTGNAFSEMEEGCLSVPGIHKKVRRPRRITVRYTNEAGELIEE 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A HE DHL+GILF+D +S + + MI K++ L +L++ Sbjct: 117 ELKDYPARVFLHEYDHLDGILFVDRISPIAKKMIAKQLEDL-RLKE 161 >gi|86357835|ref|YP_469727.1| peptide deformylase [Rhizobium etli CFN 42] gi|86281937|gb|ABC91000.1| peptide deformylase protein [Rhizobium etli CFN 42] Length = 164 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V +P+ ++ + L +++L M + G+G+ A IGVL R+ V Sbjct: 1 MPVRPILRYPHPGLKTVCQPVTAFDASLAALAEDLLATMRAAPGVGITAAHIGVLLRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +++NP+I S + + EG +S+P +V R I RY D Sbjct: 61 L---ELDRADGVRLYVNPQITWRSQETISHAEGSVSMPGATEEVTRPRAIRFRYQDAGGI 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+G LA C+QHE+D L+GI ++ LSRLKR+ + KK K Sbjct: 118 VHEKAAEGFLAICVQHEVDQLDGIFWLQRLSRLKRERLVKKWEK 161 >gi|329114617|ref|ZP_08243376.1| Peptide deformylase 1 [Acetobacter pomorum DM001] gi|326696097|gb|EGE47779.1| Peptide deformylase 1 [Acetobacter pomorum DM001] Length = 174 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LR+ ++ + DI LI +M E + + G+GLAA Q+ V RL Sbjct: 1 MAVLAIARMGHPVLRQSAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + + INP + D+ + EGCLS+PD R +V R I Sbjct: 61 IYSVPLARSEGEDDPPLPVQALINPILTPVDDETQLRAEGCLSLPDLRGEVPRYKRIWYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 121 GFDQHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKEITR 171 >gi|163855075|ref|YP_001629373.1| peptide deformylase [Bordetella petrii DSM 12804] gi|163258803|emb|CAP41102.1| peptide deformylase [Bordetella petrii] Length = 177 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV++P+ + + ++ L+ +M E M G+GLAA QIGV +LV+ Sbjct: 1 MIHAILKMGDPRLLRVAQPVGQFDTPELHELVADMFETMVHAKGVGLAAPQIGVDLQLVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V NP I SD+ EGCLS+P R V R I R Sbjct: 61 FGFEHNERYPDAPPVPLTVLCNPVITPRSDEREDGWEGCLSVPGLRGLVPRYRHIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + Q A+G A +QHE DHL G L+ + + Sbjct: 121 DPHGQPIEREAEGFHARVVQHECDHLIGRLYPSRIEDFSK 160 >gi|257460312|ref|ZP_05625415.1| peptide deformylase [Campylobacter gracilis RM3268] gi|257442377|gb|EEV17517.1| peptide deformylase [Campylobacter gracilis RM3268] Length = 172 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 2/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L + S + K ++ + L+D+M E M + +GIGLAA+Q+G R ++I Sbjct: 1 MILNVLTYPNKKLYQRSIEVVKFDAALGELLDDMYETMIAKNGIGLAAIQVGRPVRALII 60 Query: 62 DLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ I I + V+QEGCLS+P + DV R+ FITV++ D Sbjct: 61 NLANEEKIQDKKDLIEIINPQILKKEGEVVFQEGCLSVPGFYEDVTRAEFITVQFQDRAG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + A LLA C+QHE+DHL+G LFI+ + KR K+ K ++ + Sbjct: 121 NTHEMDASELLAVCIQHEMDHLDGHLFIERIGYNKRKKFDKEFKKSLKEK 170 >gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 153 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D ++ P+V NP+I Sbjct: 2 TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEI 61 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 I SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DH Sbjct: 62 IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121 Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168 L+G LFID+L +KR MIT+KM+KL + Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149 >gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 153 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-QDHAHRKNPMVFINPKI 80 + ++ +L D+ML MY GIGLAA QIGV+ RL+V+D ++ P+V NP+I Sbjct: 2 TDMTDELRSLADDMLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEI 61 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 I SD + Y+EGCLSIP+ ADV R A + VR++D + Q L ATC+QHE+DH Sbjct: 62 IAASDALNTYEEGCLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDH 121 Query: 141 LNGILFIDHLSRLKRDMITKKMSKLVQL 168 L+G LFID+L +KR MIT+KM+KL + Sbjct: 122 LDGKLFIDYLKPMKRQMITRKMTKLKRE 149 >gi|218892912|ref|YP_002441781.1| peptide deformylase [Pseudomonas aeruginosa LESB58] gi|254234257|ref|ZP_04927580.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|126166188|gb|EAZ51699.1| hypothetical protein PACG_00094 [Pseudomonas aeruginosa C3719] gi|218773140|emb|CAW28952.1| probable peptide deformylase [Pseudomonas aeruginosa LESB58] Length = 179 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D Q +G A +QHE DHL G L+ ++ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|256845417|ref|ZP_05550875.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] gi|256718976|gb|EEU32531.1| peptide deformylase [Fusobacterium sp. 3_1_36A2] Length = 174 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKEVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165 >gi|150020729|ref|YP_001306083.1| peptide deformylase [Thermosipho melanesiensis BI429] gi|149793250|gb|ABR30698.1| peptide deformylase [Thermosipho melanesiensis BI429] Length = 165 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 55/164 (33%), Positives = 99/164 (60%), Gaps = 6/164 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ DPILR+ ++ ++ + + ++ML+ MY DG+GLAA Q+G+ R V+D Sbjct: 3 IRLYGDPILRKSAKAVKDF-KYLQEIKEDMLKTMYLEDGVGLAAPQVGLSLRFFVMD--- 58 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P+ +NP+II S++ + +EGCLS+P +V+R ++ +++ D + Q Sbjct: 59 --DGSGPLFIVNPEIIAHSEEKEIGEEGCLSLPGIFENVERYKWVKLKFQDEYGKVQTRL 116 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+GILFIDHL + + ++SK++++R Sbjct: 117 FEGYSARIVQHERDHLDGILFIDHLPNAVKRRLAPELSKIMRMR 160 >gi|78224736|ref|YP_386483.1| formylmethionine deformylase [Geobacter metallireducens GS-15] gi|78195991|gb|ABB33758.1| Formylmethionine deformylase [Geobacter metallireducens GS-15] Length = 168 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M +P++ +P P+L++VS + I+ +I LID++L+ M + +G+AA QIG R+ Sbjct: 1 MPAQPILCYPHPVLKKVSHAVAVIDDEIRGLIDDLLDTMRAGPGSVGVAAPQIGATLRVC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D+ H K + I + ++ +EGC+S+PDY DV+R+ ITVR+ D Sbjct: 61 VVDVSGSRHGKENNHGVLVMVNPEIVHREGAAIMREGCMSVPDYTGDVERATTITVRFRD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + I A G A +QHE+DHL+GILF+D + LK + +K Sbjct: 121 GEGTEREISASGFEAVAIQHEMDHLDGILFLDRIVSLKTGLFRRK 165 >gi|116049053|ref|YP_792145.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|296390510|ref|ZP_06879985.1| peptide deformylase [Pseudomonas aeruginosa PAb1] gi|313106089|ref|ZP_07792346.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] gi|115584274|gb|ABJ10289.1| probable peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14] gi|310878848|gb|EFQ37442.1| putative peptide deformylase [Pseudomonas aeruginosa 39016] Length = 179 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELLGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D Q +G A +QHE DHL G L+ ++ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f. nagariensis] Length = 177 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 1/150 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDP LR V+ I + ++ L + M+EVMY DG+GLAA Q+GV RL+V + Sbjct: 11 LQIVKYPDPRLRAVNARIGVFDDSLLRLANEMIEVMYQDDGVGLAAPQVGVNIRLMVFNP 70 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 N + +NP+I+ + +EGCLS P DV+RS ITV+ +D N Q Sbjct: 71 AGRDRPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYGDVERSRQITVKALDANGQPVR 130 Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHLSR 152 + A QHE DHL G+LF D + Sbjct: 131 LQLTDPWVARIFQHEYDHLQGVLFHDRMKP 160 >gi|260887303|ref|ZP_05898566.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|330838943|ref|YP_004413523.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|260862939|gb|EEX77439.1| peptide deformylase [Selenomonas sputigena ATCC 35185] gi|329746707|gb|AEC00064.1| peptide deformylase [Selenomonas sputigena ATCC 35185] Length = 155 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + P+L+ + P+E++++ + L+D+M E MY +GIG+AA Q+G R+VV Sbjct: 1 MSLLEIKKAGAPVLKEICAPVERVDARLRKLLDDMAETMYEANGIGIAAPQVGEALRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D ITF + EGCLS+P +V+R+A + V ++D + Sbjct: 61 IDIGDGIIELV------NPKITFREGSETDSEGCLSVPGIFGEVERAAKVKVEFLDRRGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + I A GLLA C+QHELDHL G+LFID L+++ K Sbjct: 115 RKHITAKGLLARCIQHELDHLEGVLFIDVAQSLRKEEEQK 154 >gi|147678126|ref|YP_001212341.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] gi|189083075|sp|A5D1C0|DEF_PELTS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146274223|dbj|BAF59972.1| N-formylmethionyl-tRNA deformylase [Pelotomaculum thermopropionicum SI] Length = 155 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V D IL+ ++ + KIN +I+ L+DNM E MY G+GLAA QIGV R++V Sbjct: 1 MAVYKIVELGDRILKERAKEVPKINQNIIKLLDNMAETMYHARGVGLAAPQIGVSKRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + +IT EGCLSIP DV R++ I V+ +D + Sbjct: 61 VDVGEGLLE------MINPVITSCAGHETDSEGCLSIPGIVGDVTRASVIEVKGLDRRGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G LA LQHE+DHL+GILFI+ +++ Sbjct: 115 PLEVKAKGYLARALQHEIDHLDGILFIEKAKNIRK 149 >gi|258542784|ref|YP_003188217.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256633862|dbj|BAH99837.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01] gi|256636921|dbj|BAI02890.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-03] gi|256639974|dbj|BAI05936.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-07] gi|256643030|dbj|BAI08985.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-22] gi|256646085|dbj|BAI12033.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-26] gi|256649138|dbj|BAI15079.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-32] gi|256652125|dbj|BAI18059.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655182|dbj|BAI21109.1| peptide deformylase [Acetobacter pasteurianus IFO 3283-12] Length = 174 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 7/171 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+LR+ ++ + DI LI +M E + + G+GLAA Q+ V RL Sbjct: 1 MAVLAIARMGHPVLRQPAQEVPDPTAPDIQRLIADMRETLEESGGVGLAAPQVFVSQRLF 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + + INP + D+ + EGCLS+PD R +V R I Sbjct: 61 LYSVPLARSEGEDDPSLPVQALINPVLKPVDDEKLLRTEGCLSLPDLRGEVPRYKRIWYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q A G A +QHE+DHL+GIL+ ++ + + K++++ Sbjct: 121 GFDPHGQKVEGMATGFRAHVMQHEMDHLDGILYPMRMTDMSKFGFAKELTR 171 >gi|119716828|ref|YP_923793.1| peptide deformylase [Nocardioides sp. JS614] gi|119537489|gb|ABL82106.1| peptide deformylase [Nocardioides sp. JS614] Length = 199 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 3/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + P++ R +P+ + ++ L +M+ MY+ DG+GLAA QIGV + V Sbjct: 22 TARSITRWGTPVMHRAQQPVTTYDDELRALAADMVATMYAADGVGLAACQIGVDLAMFVF 81 Query: 62 DLQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D + V NP+ +EGCLS P + R +V + Sbjct: 82 DCPDDSGVHTVGVVCNPQLTLPEGRDRQLDESEEGCLSFPGAHVECARPDQASVTGTGLD 141 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + DGLLA CLQHE DH G +F D LS R + K Sbjct: 142 GEPVSFSGDGLLARCLQHETDHTRGTVFGDRLSTKLRKRLQK 183 >gi|217077056|ref|YP_002334772.1| def peptide deformylase [Thermosipho africanus TCF52B] gi|217036909|gb|ACJ75431.1| def peptide deformylase [Thermosipho africanus TCF52B] Length = 165 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 100/165 (60%), Gaps = 6/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + ++ DPILR+ ++ +E I + +++L++MY DG+GLAA Q+G+ R +D Sbjct: 2 KIRLYGDPILRKKAKIVEDF-EYIQQIKEDLLKIMYLEDGVGLAAPQVGISLRFFAMD-- 58 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++ +NP+II S + + +EGCLS+P DV+R ++ +RY D + Q Sbjct: 59 ---DGSGPLIIVNPEIIEHSQEKEIGEEGCLSLPGIFEDVERYKWVKLRYQDEYGKVQEK 115 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G A +QHE DHL+GILFIDHL + ++ ++SK++++R Sbjct: 116 LFEGYSARIVQHERDHLDGILFIDHLPTSVKRRLSTELSKIMRMR 160 >gi|291296560|ref|YP_003507958.1| peptide deformylase [Meiothermus ruber DSM 1279] gi|290471519|gb|ADD28938.1| peptide deformylase [Meiothermus ruber DSM 1279] Length = 194 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 14/177 (7%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M P+ ++ DP+L++ + P++ S I L +NMLE M+ G+GLAA Q+GV RL Sbjct: 1 MAEILPIRLYGDPVLKKKALPVQDF-SGIPQLAENMLETMFEARGVGLAAPQVGVSQRLF 59 Query: 60 VIDLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 V + V +NP I + S+ + Y +R Sbjct: 60 VAAEYLDDDEEEGPEADLKTRVKQLYVMVNPVITYRAGRQSILEGCLSLPGLYAEGAQRD 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V Y D + Q +++ A+G LA +QHE+DHL+GILF +S R ++ + Sbjct: 120 LQVRVEYQDEHGQKKVLEAEGYLAVVMQHEIDHLDGILFFQRMSFADRQKFLEEHRE 176 >gi|89052959|ref|YP_508410.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862508|gb|ABD53385.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 164 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 2/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P V +PD LR ++ + + + +M++ M + G+GLAA QIGV+ RL V Sbjct: 1 MPIRPFVPYPDKRLRTMAETVGPVTDAHREIWQDMIDTMDAMPGVGLAAPQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + + +P+II+ SD+ + Y EG ++P A + R A +TV + D Sbjct: 61 VDASDDRGQA--IRMADPEIISASDEMNTYPEGSPNLPGVTAKITRPARVTVAFTDHMGL 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 L AT +QH++DHL G +++DHLSR KR+M+ KK + Sbjct: 119 RVRQEFVDLWATSVQHQIDHLAGKVYVDHLSRTKREMVIKKSRR 162 >gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902] gi|123743565|sp|Q3AZU8|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902] Length = 201 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 62/161 (38%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + LR+ ++ I K+N + L +ML MY+ GIGLAA Q+ V +L+VIDL Sbjct: 31 LEIHTLGADALRQPAQRIGKVNDQVRELARDMLRSMYTAKGIGLAAPQVAVYQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I S Y+EGCLSIP DV R I + Y D + + Sbjct: 91 DLENAATPPLVLINPEITAASAGLDTYEEGCLSIPGVYLDVVRPTAIELSYRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + ADGL+A C+QHE+DHLNG+LF+D ++ + + K++ + Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTD--QAGLQKELKE 189 >gi|325918418|ref|ZP_08180546.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] gi|325535380|gb|EGD07248.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937] Length = 176 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M G+GLAA QI V +L+V Sbjct: 6 MIREIIRMGDKRLLRVAPPVTNLGSAELQALVADMFETMDDARGVGLAAPQIAVDLQLMV 65 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I SD+ EGCLSIP RA + R I R Sbjct: 66 FGFEVSERYPDAPTVPRTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRHIRYRGF 125 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 126 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 163 >gi|227500109|ref|ZP_03930180.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] gi|227217824|gb|EEI83121.1| peptide deformylase [Anaerococcus tetradius ATCC 35098] Length = 158 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR++SR + +I I L+D+M + MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEGDPILRKISRNVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D + +NP+II + + CLSIP++ A VKR + V+Y++ N + Sbjct: 61 VDPHDDSTGLIK--LVNPEIIEEDGEQVGIEG-CLSIPNFNATVKRPEHVKVKYLNENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHLNGILF D Sbjct: 118 EKIWDAHGFPAEILSHEIDHLNGILFRDK 146 >gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803] gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803] Length = 201 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 90/151 (59%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 29 APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+I + S Y+EGCLSIP DV R + + V + D + Sbjct: 89 DLDPETASSPPLVLINPEITSASASLETYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 148 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 149 RTMKADGLMARCIQHEMDHLTGVLFVDRVTD 179 >gi|255527719|ref|ZP_05394575.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296187196|ref|ZP_06855593.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255508594|gb|EET84978.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296048231|gb|EFG87668.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 150 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ SR +E ++ I ++++M E MY+ +G GLA Q+G+L RLV Sbjct: 1 MALRQIRLFGDEILRKKSREVEVVDDKIRQILNDMAETMYNTENGGGLAGPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ + +NPKII V + CLS P+ +KR A + V+ ++ N Sbjct: 61 VMDM-----GGGLIKLVNPKIIEQEGTQEVIEG-CLSSPNTWGKLKRPAKVKVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGSLAKCFCHEIDHLEGILFTDLVT 146 >gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6] gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6] Length = 168 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 2/150 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +P L + + + +L+ +M E MY+ G GLAA Q+GV++RL V Sbjct: 1 MALLPILRWPHEGLSKRCEEVAPST--LGSLVADMFETMYAAPGRGLAAPQVGVMHRLFV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +P+V INP+I+ + + EGCLSIP DV+RS + +R+ D Sbjct: 59 MDATWKEGPGSPVVMINPEIMAYDGGTDILAEGCLSIPGITIDVERSKSVNMRWQDQAGD 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 Q + G A C+QHE DHL G + DHL Sbjct: 119 WQERWFSGFEARCIQHEFDHLEGRVTFDHL 148 >gi|121610540|ref|YP_998347.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] gi|121555180|gb|ABM59329.1| peptide deformylase [Verminephrobacter eiseniae EF01-2] Length = 186 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ DP L R++RP+ +++ + L+ +ML+ M+ +G GLAA QIGV +LV Sbjct: 1 MTIHRILKMGDPRLLRIARPVTGFDTEALHGLVRDMLDTMHDANGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V +H R V +NP I D EGCLS+P R V R + I Sbjct: 61 VFGSGEHNPRYPGRPPVPLTVLLNPVITPLGQDEKEDWEGCLSVPGLRGMVPRWSRIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D DG A +QHE DHL G L+ + ++ Sbjct: 121 GVDPYGHPIDRSVDGFHARVVQHECDHLVGKLYPMRVRDFRQ 162 >gi|88802639|ref|ZP_01118166.1| peptide deformylase [Polaribacter irgensii 23-P] gi|88781497|gb|EAR12675.1| peptide deformylase [Polaribacter irgensii 23-P] Length = 196 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 71/180 (39%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + DP+LR+VS I + D+ LI NM E MY+ G+GLAA QIG RL +I Sbjct: 1 MILPIIAYGDPVLRKVSEDIPEDYPDLDKLIHNMRETMYNASGVGLAAPQIGKAIRLFLI 60 Query: 62 DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + VFIN +II + V+ EGCLSIPD R DV R Sbjct: 61 DASPFAEDEELSEKDRNVLKTFNKVFINAQIIAEEGEEWVFNEGCLSIPDVREDVSRQPV 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D N + +GL A QHE DH+ GILF D LS LK+ +I KK+ + + + Sbjct: 121 IKIKYQDENFKKHFETLEGLAARVFQHEYDHIEGILFTDKLSTLKKRIIKKKLENISKGK 180 >gi|67459122|ref|YP_246746.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004655|gb|AAY61581.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 183 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 104/163 (63%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ + +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQTLNIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINP+I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 NNKSS-PIVFINPEITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D++S+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYVSKLKRDTLLKKMLKHIKL 171 >gi|300934519|ref|ZP_07149775.1| peptide deformylase [Corynebacterium resistens DSM 45100] Length = 163 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 7 VIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 F DP+LR V+ PI S + L+ +MLE M G+GLAA Q+GV R+ V D Sbjct: 2 RYFGDPVLRTVADPIAPAQVGESSVRTLVADMLETMDHYGGVGLAANQVGVTKRVFVYDC 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 INP+ D+ EGCLS+P V R+ + V + + + Sbjct: 62 DGDRG-----HIINPEWQRIGDEEQTGPEGCLSVPGIGGTVTRAMRVRVTGLTVDGEPID 116 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 LLA C+QHE DHLNGI+F+ HLS +R K++ Sbjct: 117 REVTELLARCVQHETDHLNGIMFLKHLSSEERKEAMKEIR 156 >gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 177 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + L + +PILR+ + PIE+I+ I L +M+E M++T+GIGLAA QIG L + V Sbjct: 1 MLLSLAYYGNPILRKKAIPIERIDDSIRQLATDMIETMHATNGIGLAANQIGQLLSIFVT 60 Query: 62 D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VFINPKI+ +S +F V+ EGCLSIP +DV R I ++ MD Sbjct: 61 CVPIAQDDGTWIDGKDRVFINPKILAYSQEFQVFSEGCLSIPKLFSDVARPESIKIQAMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + G AT HE DHLNG+LFID L R +R I + ++ + Sbjct: 121 LDGNVFEETMTGYEATNFMHENDHLNGVLFIDRLHRTERKKIEPILQQIKK 171 >gi|269955166|ref|YP_003324955.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269303847|gb|ACZ29397.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+L +RP+ ++ ++ LID+M M +G+GLAA Q+GV R+ V Sbjct: 33 VLRITEIGEPVLHTPARPVTELGTPELARLIDDMFTTMDVAEGVGLAAPQVGVDLRVFVY 92 Query: 62 DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL D A ++ +NP++ D V EGCLS+P A ++R T+R +D Sbjct: 93 DLTDDAGDRHVGAVVNPELELDLDADPEVEDEGCLSVPGAYAPLERPGGATIRGVDQLGG 152 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-----RDMITKKMSKLVQLRD 170 + A G LA C HE HL+G L+ DHL+ + R K+ L Q R+ Sbjct: 153 PVQLEATGYLARCFIHEAQHLDGTLYWDHLTPEQQADALRQRDEKRAEVLAQRRE 207 >gi|328957297|ref|YP_004374683.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673621|gb|AEB29667.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 176 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +P+ +L ++ +E+I +I+ L+++M + M + DGIG+AA Q+ RL + Sbjct: 13 MSVLPILTYPNALLTTPTKEVEEITDEIIQLLEDMHDTMIANDGIGIAAPQVSSNLRLAL 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ + + + I S ++ EGCLS P+ +KR+ I +R+ D N Sbjct: 73 VEIDEESGL----FEMINPQIVQSTGETIDVEGCLSFPEVYGTIKRADTIVLRFYDRNGD 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + AD LA QHEL+HL+G LF D + Sbjct: 129 EFEVEADDYLARAFQHELEHLDGKLFTDKI 158 >gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 188 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 92/150 (61%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D +LR+ + I ++N++ L ML+ MYS DGIGLAA Q+GV +L+V+D+ Sbjct: 17 LTIHYLGDRVLRQPCKRISQVNNETRELARTMLQTMYSADGIGLAAPQVGVNKQLIVVDI 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ +NP I FS + S+ QEGCLSIP DVKR I V Y D + Q+ Sbjct: 77 HPDEAANPPLILVNPVIREFSPEVSLGQEGCLSIPGVYLDVKRPEMIEVAYKDEQGRPQV 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 +YA GLL+ +QHE+DHL G++F+D + + Sbjct: 137 LYASGLLSRAIQHEIDHLGGVMFVDRVENM 166 >gi|225848865|ref|YP_002729029.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643764|gb|ACN98814.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 179 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 6/171 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID--- 62 + +PD IL+ ++ I+ + + ID M E MY +G+GLAA QIG+ Y+++VID Sbjct: 5 IRTWPDKILKEPTKEIDFFDDRLKEYIDKMWEFMYKEEGVGLAANQIGIPYQILVIDTSI 64 Query: 63 ---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + + I + + EGCLS P + + R + V + Sbjct: 65 REKKNEEETEPPVKMVLINPKIVEKEGQVMSTEGCLSFPGVQITIPRYKRVKVVGKNEKG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + ++ + L+ LQHE+DHLNGI FI +LS LKR ++ K K ++ + Sbjct: 125 EDVVVESSEFLSIVLQHEIDHLNGIPFISYLSPLKRKLVLDKYLKSLKESE 175 >gi|290962175|ref|YP_003493357.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260651701|emb|CBG74826.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 156 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 72/148 (48%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 + + ++ L+++M MY G+GLAA Q+G R+ V D D ++ + Sbjct: 4 PCEEVTEFGPELARLVEDMFATMYDARGVGLAANQVGRALRVFVYDCPDDEDVRHLGHVV 63 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP++++ EGCLS+P A V+R V + ++ G A CLQH Sbjct: 64 NPRLVSAEGIVLRGPEGCLSLPGLEAGVERYDEAAVEGFTVDGDRVRVWGSGFFARCLQH 123 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSK 164 E DHL G ++ D LS +R + +K ++ Sbjct: 124 ECDHLEGRVYADRLSGWRRRRVLRKAAR 151 >gi|310829317|ref|YP_003961674.1| peptide deformylase 1 [Eubacterium limosum KIST612] gi|308741051|gb|ADO38711.1| peptide deformylase 1 [Eubacterium limosum KIST612] Length = 151 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + FPD IL + RP+E I+ + LI +M E MY + GLAA Q+GVL R+V Sbjct: 1 MAIRQIRKFPDDILHKKCRPVETIDKRTLELIKDMTETMYQLPNCGGLAANQVGVLKRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + ++ I + EGC+S PD VKR + V Y Sbjct: 61 VIDVGEGLYQLVNPKIIEAEGERIVV------EGCMSSPDVWGKVKRPERVVVEYTTPEG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + ADGLLA C HELDHL+GI F D + Sbjct: 115 EVLQKEADGLLAKCFCHELDHLDGIFFTDKV 145 >gi|254461985|ref|ZP_05075401.1| polypeptide deformylase [Rhodobacterales bacterium HTCC2083] gi|206678574|gb|EDZ43061.1| polypeptide deformylase [Rhodobacteraceae bacterium HTCC2083] Length = 163 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + + +I ++ + ++++ M + G+G+ A QIGV+ RL V Sbjct: 1 MSVRRCIPWPDKRLRSKAADVSEITDEVCAVWTDLIDTMEAMPGVGMGANQIGVMLRLAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + + NP+I+ S + + E ++P A +KR +TV++M+ Sbjct: 61 LDASNERGKVI--RMANPEILHASAELREHDEASPNLPGVSAVIKRPRAVTVKFMNDKGI 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHLNG L+ DHLSR+KR M+ KK KL Sbjct: 119 IDRRDFVGLWATSVQHQIDHLNGKLYFDHLSRVKRTMLIKKAQKL 163 >gi|227484652|ref|ZP_03914968.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] gi|227237372|gb|EEI87387.1| peptide deformylase [Anaerococcus lactolyticus ATCC 51172] Length = 161 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR++SRP+E + I L+D+M E MY+ DG+GLAA Q+G L R++V Sbjct: 1 MAIRNIRIDGDPILRKISRPVEDVTDRIRILLDDMAETMYAADGVGLAAPQVGNLRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D +D +NP+I+ + + CLSIPD+ A VKR + V+Y+D N + Sbjct: 61 VDPRDGEDSLVK--LVNPEILEMDGEQIGVEG-CLSIPDFNATVKRPEHVKVKYLDENGE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHLNGILF D Sbjct: 118 EKIWDAHGFPAVILCHEIDHLNGILFKDK 146 >gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328] gi|238687734|sp|B0S139|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328] Length = 162 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR +EKI+ I ++++M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVEKIDDRIKQIVEDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD MV INPKII S++ + EGCLS+P V+R + V Y D N Sbjct: 61 IDMQDEDG---KMVLINPKIIEKSEEKQINIEGCLSVPGKNGYVERPKTVVVEYTDLNGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q + A C HELDHL+G+L+ D + ++ +++ +L + Sbjct: 118 TQRVMGTDYKAHCFCHELDHLDGVLYTDKV----LNLSEEEVERLNNEK 162 >gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769848|ref|YP_244610.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|188993065|ref|YP_001905075.1| peptide deformylase [Xanthomonas campestris pv. campestris str. B100] gi|25452914|sp|Q8PCN7|DEF1_XANCP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575180|gb|AAY50590.1| peptide deformylase [Xanthomonas campestris pv. campestris str. 8004] gi|167734825|emb|CAP53035.1| Peptide deformylase [Xanthomonas campestris pv. campestris] Length = 171 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + + ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSDELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I SD+ EGCLSIP RA + R I Sbjct: 61 FGFEASERYPEAPAVPRTALANVQIEPLSDEMENGWEGCLSIPGLRAVIPRHRVIRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGTPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|84514539|ref|ZP_01001903.1| peptide deformylase [Loktanella vestfoldensis SKA53] gi|84511590|gb|EAQ08043.1| peptide deformylase [Loktanella vestfoldensis SKA53] Length = 169 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + V +P P+LR + P+ I +I L D M+ M + G+GLAA Q+GV L V Sbjct: 1 MTHRAYVQWPHPVLRTPAAPVAAITDEIRALWDEMIVAMDTMPGVGLAAPQLGVGLALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S +F ++EG ++P A + R +TVR+++ + + Sbjct: 61 VDA--STMRGQAVRMANPEILHSSVEFRDHEEGSPNLPGVWARISRPRAVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + GL AT +QH++DHL G +FID +++++RDM+ Sbjct: 119 VEERDFVGLWATSVQHQIDHLAGRMFIDRMTKVRRDML 156 >gi|257068124|ref|YP_003154379.1| peptide deformylase [Brachybacterium faecium DSM 4810] gi|256558942|gb|ACU84789.1| peptide deformylase [Brachybacterium faecium DSM 4810] Length = 188 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P+ I L + +R + ++ ++ L+ +M E + G GLAA Q+G +RL V Sbjct: 1 MTVRPITIVGHKALTQRTRRVREVTDELRTLVADMFETNDAASGAGLAAPQVGSRWRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYMDCN 118 D + V +NP + F + EGCLS+P R V D + Sbjct: 61 YSCPDASGTLRRGVVLNPVLERFGGIVLDEETLEGCLSVPGEGFPTARHRGARVTGTDLD 120 Query: 119 AQHQIIYAD-GLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 ++ + G+LA LQHE+DHL G L++D L+ +R Sbjct: 121 GAEVVVEDEGGVLARALQHEVDHLEGSLYLDRLAPARRREAL 162 >gi|170703079|ref|ZP_02893901.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171322052|ref|ZP_02910926.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|172060971|ref|YP_001808623.1| peptide deformylase [Burkholderia ambifaria MC40-6] gi|170132008|gb|EDT00514.1| peptide deformylase [Burkholderia ambifaria IOP40-10] gi|171092643|gb|EDT37944.1| peptide deformylase [Burkholderia ambifaria MEX-5] gi|171993488|gb|ACB64407.1| peptide deformylase [Burkholderia ambifaria MC40-6] Length = 177 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V++P+ + + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|317402414|gb|EFV82986.1| peptide deformylase 1 [Achromobacter xylosoxidans C54] Length = 177 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DP L RV+ P+E+ + ++ LI++M E M + G+GLAA QIGV +LV+ Sbjct: 1 MIHSILKMGDPRLLRVAPPVERFDTPELHALIEDMFETMAAAQGVGLAAPQIGVDLQLVI 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A + NP I SDD EGCLS+P R V R I + Sbjct: 61 FGFDRNERYPDAPAVPQTILCNPVITPLSDDMEDGWEGCLSVPGLRGLVPRYRHIRYQGK 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ + + Sbjct: 121 DPYGRDIDREAEGFHARVVQHECDHLIGRLYPSRIQDFSK 160 >gi|221215452|ref|ZP_03588416.1| peptide deformylase [Burkholderia multivorans CGD1] gi|221164636|gb|EED97118.1| peptide deformylase [Burkholderia multivorans CGD1] Length = 177 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805] gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805] Length = 183 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 91/151 (60%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 11 APLQIHTLGDDVLRLDARRIGKVDETVRDLARDMLRSMYTARGIGLAAPQVGVHQQLLVI 70 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+II+ S Y+EGCLSIP DV R + + V + D + Sbjct: 71 DLDPETASSPPLVLINPEIISASASLDTYEEGCLSIPGVYLDVVRPSAVQVSFRDEMGRP 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 131 KTLKADGLMARCIQHEMDHLTGVLFVDRVTD 161 >gi|297544786|ref|YP_003677088.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842561|gb|ADH61077.1| peptide deformylase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 159 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS ++ ++D+M++ MY +G+GLAA Q+G+L RL+V Sbjct: 1 MAIRYIRKIGDEVLRKKAKPVTEINSHVLTILDDMVQTMYLNEGVGLAANQVGILRRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDIGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] gi|238693348|sp|B4S9B9|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271] Length = 186 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 3/170 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ I+ D +LRR ++P++ I++ LI NM+E M + GIGLAA QIG+ RL+++ Sbjct: 1 MILPITIYSDEVLRRKAKPLKGIDTSHEELIGNMIESMRNASGIGLAAPQIGLSMRLLIV 60 Query: 62 DLQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 DL PMV INP I+ ++ +EGCLSIPD ADV R + I ++Y + + Sbjct: 61 DLSPVQGYENAEPMVVINPHILAVKGYNAM-EEGCLSIPDIHADVVRPSSIQLKYRNEHF 119 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + ++ L+A LQHE+DHL+G LF+D L R R + K + + + Sbjct: 120 EERVDEFSALMARVLQHEIDHLDGTLFVDKLQRRDRRKVQKSLEDIAAGK 169 >gi|313157241|gb|EFR56671.1| peptide deformylase [Alistipes sp. HGB5] Length = 181 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI+ + +LR+ I ++ L+++M + + +G+GLAA QIG RL ++ Sbjct: 1 MIYPIVIYGNEVLRKQCEEIAPDYPEVKKLVEDMFQTLGEAEGVGLAAPQIGKAIRLFIV 60 Query: 62 DLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D FINP+I FS++ Y EGCLS P ADV RS I +RY+D Sbjct: 61 DCTPWGEDDPECADYKRAFINPEIYAFSEEKKTYNEGCLSFPGIHADVPRSLAIRMRYLD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 N GL A +QHE DH+ G++F D +S L+R Sbjct: 121 ENFVEHDEEFHGLKAWVIQHEYDHIEGVVFTDRISPLRR 159 >gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4] gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17] gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442] Length = 158 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V PD +L + + ++NL+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPDEVLETPCERVMNFDKKLVNLLKDMHETMLVADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIGDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERAEYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ AD LA +QHE+DHL+G+LF ++R Sbjct: 117 IFLLEADDFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|292670259|ref|ZP_06603685.1| peptide deformylase [Selenomonas noxia ATCC 43541] gi|292648211|gb|EFF66183.1| peptide deformylase [Selenomonas noxia ATCC 43541] Length = 156 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +P+L++ + PIE++ ++D+M E MY+ +G+GLAA QIG RLVV Sbjct: 1 MAILEIKKAGNPVLKQKAEPIERLTKRHRQMLDDMAETMYAANGVGLAAPQIGKSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++D + +IT + V EGCLSIP DV+R+ +TV Y D ++ Sbjct: 61 IDVEDEHGLLELV----NPVITMREGSVVDSEGCLSIPKVYGDVERAERVTVEYTDRRSR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + + ADGLLA C+QHE DHL+G LFID L+++ Sbjct: 117 RRTLTADGLLARCIQHECDHLDGRLFIDIAINLRKE 152 >gi|291280498|ref|YP_003497333.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] gi|290755200|dbj|BAI81577.1| polypeptide deformylase [Deferribacter desulfuricans SSM1] Length = 167 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 53/167 (31%), Positives = 94/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + ++ +P+P+L+ +S+ + ++ DI N+I ++++ M ++ G+AA QIG L R++ Sbjct: 1 MPIREVLTYPNPLLKEISKEVTELTDDIKNIIKDLVDTMDATSHSTGIAAPQIGELVRII 60 Query: 60 VIDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID + + I + +EGC+S+PDY +V R+ + V+++D Sbjct: 61 AIDPGKNKKCKNHHGKRVLINPEIVKWEGLIQSREGCMSVPDYTGNVNRAEKVVVQFLDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N Q A+G A LQHE+DHL+GILFID + + D+ +K K Sbjct: 121 NLQPGAFEAEGFEAILLQHEIDHLDGILFIDRIISKRTDLFRRKKYK 167 >gi|256372453|ref|YP_003110277.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] gi|256009037|gb|ACU54604.1| peptide deformylase [Acidimicrobium ferrooxidans DSM 10331] Length = 164 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ DP+L +R +E I++ + LI++M+ M+ G+GLAA Q+GV RL V Sbjct: 1 MPILPIRTIGDPVLSHRAREVETIDARLDQLIEDMIVTMHEAPGVGLAAPQVGVDLRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D+ D + Y+EGCLS+P Y ++R + +RY+ + + Sbjct: 61 WDIGDGPDVAINPEIVERTGT------WRYEEGCLSVPGYFWPIERPRTVLLRYVTRDGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + LL QHE DHL+G+L I Sbjct: 115 VAELEGSDLLGRVFQHETDHLDGVLLI 141 >gi|297626643|ref|YP_003688406.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922408|emb|CBL56980.1| Polypeptide deformylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 206 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 3/167 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + I+R +RP+ + + LI +M + M + DG+GLAA Q+ L V + Sbjct: 13 VLRITRWDESIMRSQTRPVTTFDDTLAQLIADMFKTMAAADGVGLAAPQVDSDLALFVFN 72 Query: 63 LQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + V NP QEGCLS P + R F D Sbjct: 73 CPDIHDKLVYGVMCNPVVTLPEGKDRHLVSAQEGCLSWPGAYQSLARPDFAVCEGQDETG 132 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + GLLA CLQHE DHL+G +F D LS+ R + ++ +L Sbjct: 133 APVRVEGTGLLARCLQHETDHLHGTVFGDRLSKRARRRLDQEKEELA 179 >gi|330468108|ref|YP_004405851.1| peptide deformylase [Verrucosispora maris AB-18-032] gi|328811079|gb|AEB45251.1| peptide deformylase [Verrucosispora maris AB-18-032] Length = 165 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 7/162 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVI 61 + + I DP+LR S PI ++++ +L+ ++++ + G+AA QIGV ++ V Sbjct: 1 MRDIRIIGDPVLRTPSEPITSFDAELRSLVTDLMDTLLGKPGRAGVAAPQIGVNAQVFVY 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D H + + SD+ EGCLSIP R+ T D + + Sbjct: 61 DADGHRGH------MINPTLDLSDELQDDDEGCLSIPGLYFPTPRALHATAHGFDQHGEP 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I G LA LQHE DHL+G L++D L R +++ Sbjct: 115 LTIAGSGFLARALQHETDHLHGRLYVDTLRGDIRRRALREIR 156 >gi|221198327|ref|ZP_03571373.1| peptide deformylase [Burkholderia multivorans CGD2M] gi|221208266|ref|ZP_03581270.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221171914|gb|EEE04357.1| peptide deformylase [Burkholderia multivorans CGD2] gi|221182259|gb|EEE14660.1| peptide deformylase [Burkholderia multivorans CGD2M] Length = 177 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGS 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|325284991|ref|YP_004260781.1| peptide deformylase [Cellulophaga lytica DSM 7489] gi|324320445|gb|ADY27910.1| Peptide deformylase [Cellulophaga lytica DSM 7489] Length = 196 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 12/159 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+LR+ ++ I + + + L++NM E MY+ G+GLAA Q+G+ R+ ++ Sbjct: 1 MILPITAYGDPVLRKKAKDINQDHPKLKELLENMWETMYNASGVGLAAPQVGLPLRIFLV 60 Query: 62 DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FIN KII + + + EGCLSIPD R DV R Sbjct: 61 DTTPFSDDEDLSAEEQKALNGFKKAFINAKIIEETGEEWAFNEGCLSIPDIREDVSRKEN 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 I + Y+D N + +GLLA +QHE DH+ GILF D Sbjct: 121 IKITYLDENFKEHTEEYNGLLARVIQHEYDHIEGILFTD 159 >gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 270 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 7/169 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDP+LR ++ I ++++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 79 LKVVQYPDPVLRARNKRINTFDNNLRSLADEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 138 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP + FS SVY+EGCLS P A+V R + + D + Sbjct: 139 AGVKGEGEEIVLVNPVVYKFSKRLSVYEEGCLSFPGIYANVLRPDTVKIDAQDASGAKIK 198 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS-------RLKRDMITKKMSKL 165 + L A QHE DHL GILF D ++ + + +K ++ Sbjct: 199 VKLSELSARVFQHEFDHLQGILFFDRMTMDVVESIHEQLKSLEEKYEEI 247 >gi|118594792|ref|ZP_01552139.1| peptide deformylase [Methylophilales bacterium HTCC2181] gi|118440570|gb|EAV47197.1| peptide deformylase [Methylophilales bacterium HTCC2181] Length = 171 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M K ++ DP+L ++PIE +N ++ +I++M+E M + DG GLAA QIG+ +LV Sbjct: 1 MAIKDILKMGDPLLLSAAQPIEAVNTPELNQIIEDMIETMKANDGAGLAAPQIGLSIQLV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP+II ++ EGCLS+P R V R I + Sbjct: 61 IFGFDSNERYPDAEEVPFTVLINPEIIPLEEEMEDGWEGCLSVPGLRGVVPRYKSIHYKG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +D Q DG A +QHE DHL G L+ ++ + Sbjct: 121 IDQFGQTIDRKVDGFHARVVQHECDHLIGKLYPMRMNDM 159 >gi|294624946|ref|ZP_06703599.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665783|ref|ZP_06731054.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600746|gb|EFF44830.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604435|gb|EFF47815.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 171 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|312898702|ref|ZP_07758092.1| peptide deformylase [Megasphaera micronuciformis F0359] gi|310620621|gb|EFQ04191.1| peptide deformylase [Megasphaera micronuciformis F0359] Length = 176 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+L++ + P++ I + L+D+M E MYS +G+GLAA Q+ ++VV Sbjct: 23 MSALRIVKDGAPVLKKTAAPVKTITKRVKRLLDDMAETMYSAEGVGLAAPQVNESLQIVV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + INP+I+ S++ EGCLS+P DV R I V+ + + Sbjct: 83 L-----DDGNGLIELINPEILDVSEETEYGPEGCLSVPGIYGDVSRYTKIKVQAKNRFGK 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I +G LA QHE+DHL G LF + L++ Sbjct: 138 TVIYEPEGFLARIFQHEMDHLKGHLFTEKAVNLRK 172 >gi|205373320|ref|ZP_03226124.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 161 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 89/164 (54%), Gaps = 7/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V P+ +L + + + + + L+DNM + M DG+GLAA QIG + + Sbjct: 1 MPVLPIVFHPNEVLEKECKRVTIFDKKLRKLLDNMYDTMIEADGVGLAAPQIGQDISVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP+I+ + + + CLS P+ + R A++ V+ D + Sbjct: 61 VDIGDD---SGIIELVNPEILETNGIETDIEG-CLSFPNLYGTLTRPAYVKVKAQDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A+G LA +QHE+DHL+G+LF S+++R + +++ + Sbjct: 117 AYTIEAEGFLARAIQHEIDHLHGVLFT---SKVERYIEAEELER 157 >gi|58038609|ref|YP_190573.1| polypeptide deformylase [Gluconobacter oxydans 621H] gi|58001023|gb|AAW59917.1| Polypeptide deformylase [Gluconobacter oxydans 621H] Length = 170 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +P+L +V++ + +I +LI +MLE M G GLAA Q+ R+ Sbjct: 1 MPLLKIARMGNPVLHQVAQAVSDPKAPEIQSLIADMLETMADARGAGLAAPQVHQPLRIF 60 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V + + P V INP+I D+ V EGCLSIP RADV R A + Sbjct: 61 VYHVPTNRVANPEEALLPRVLINPEITPVGDEMMVCSEGCLSIPGLRADVPRHAKVRYSG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +D N A G A LQHE DHLNGIL+ ++ R +++ + Sbjct: 121 LDENGAVLEGEATGFHANVLQHENDHLNGILYPQRITDFARFGYVEEILR 170 >gi|34762409|ref|ZP_00143410.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742081|ref|ZP_04572562.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294785287|ref|ZP_06750575.1| peptide deformylase [Fusobacterium sp. 3_1_27] gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429729|gb|EEO39941.1| polypeptide deformylase [Fusobacterium sp. 4_1_13] gi|294487001|gb|EFG34363.1| peptide deformylase [Fusobacterium sp. 3_1_27] Length = 174 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 98/169 (57%), Gaps = 6/169 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L+++++ +E +IN + +D+M+E MY TDG+GLAA QIGV R+ Sbjct: 1 MVYEIKKYGEDVLKQIAKKVELNEINDEFRKFLDDMVETMYETDGVGLAAPQIGVSKRIF 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V INP ++ +++ ++EGCLS+P V+R + ++Y++ N Sbjct: 61 VC----DDGNGVVRKVINPIVVPLTEETQEFEEGCLSVPGIYKKVERPKRVLLKYLNENG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + A+ LA +QHE DHL+GILFI+ +S + + +I KK++ + + Sbjct: 117 EEIEEIAENFLAVVVQHENDHLDGILFIEKISPMAKRLIAKKLANMKKE 165 >gi|223040084|ref|ZP_03610365.1| peptide deformylase [Campylobacter rectus RM3267] gi|222878670|gb|EEF13770.1| peptide deformylase [Campylobacter rectus RM3267] Length = 170 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R++++ Sbjct: 1 MILEILTYPNKKLFVKSLEVKVFDEELHKFLDDMYETMIAKNGIGLAAIQTGEAKRILIV 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L D ++ I I + +YQEGCLS+P Y DVKR+ FIT+ Y D Sbjct: 61 NLFDEESKEQRKEDLLEIINPKILRKEGEIIYQEGCLSVPGYYEDVKRAEFITLEYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Q + + A+GLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 121 GQRRELEAEGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKKQK 168 >gi|170723021|ref|YP_001750709.1| peptide deformylase [Pseudomonas putida W619] gi|169761024|gb|ACA74340.1| peptide deformylase [Pseudomonas putida W619] Length = 178 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRVAAPVPEHLIGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I+ Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPLSTEIEEGWEGCLSVPGLRGVVPRYKHISYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D ADG A +QHE DHL G L+ + + Sbjct: 121 GIDPQGNPVNRVADGFHARVVQHECDHLIGRLYPSRIQDFAK 162 >gi|218899020|ref|YP_002447431.1| peptide deformylase [Bacillus cereus G9842] gi|228902371|ref|ZP_04066527.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] gi|228909692|ref|ZP_04073515.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228966817|ref|ZP_04127861.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|218544444|gb|ACK96838.1| peptide deformylase [Bacillus cereus G9842] gi|228792916|gb|EEM40474.1| Peptide deformylase [Bacillus thuringiensis serovar sotto str. T04001] gi|228849981|gb|EEM94812.1| Peptide deformylase [Bacillus thuringiensis IBL 200] gi|228857269|gb|EEN01773.1| Peptide deformylase [Bacillus thuringiensis IBL 4222] Length = 156 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV + Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 58 VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|326389546|ref|ZP_08211113.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] gi|325994551|gb|EGD52976.1| peptide deformylase [Thermoanaerobacter ethanolicus JW 200] Length = 159 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYIRKNGDEVLRKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|161524426|ref|YP_001579438.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189350819|ref|YP_001946447.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|160341855|gb|ABX14941.1| peptide deformylase [Burkholderia multivorans ATCC 17616] gi|189334841|dbj|BAG43911.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616] Length = 177 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+++ + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVDRFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 D A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGSNDRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYSGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307] gi|166198524|sp|A5GQU9|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307] Length = 201 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 87/149 (58%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + LR+ ++ I K+N + L ML MY+ GIGLAA Q+GV +L+VIDL Sbjct: 32 KIHTLGSNELRKPAKRISKVNEQVRELAREMLRSMYAAHGIGLAAPQVGVHQQLLVIDLD 91 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+V INP+I+ S Y+EGCLSIP +V R + + V+Y D + Q Sbjct: 92 PEEAANPPLVLINPEIVATSGALDTYEEGCLSIPGVYLNVVRPSQVDVKYRDELGRPQRR 151 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 ADGL+A C+ HE+DHLNG+LF+D +S Sbjct: 152 KADGLMARCILHEMDHLNGVLFVDRVSDE 180 >gi|89070115|ref|ZP_01157445.1| peptide deformylase [Oceanicola granulosus HTCC2516] gi|89044336|gb|EAR50479.1| peptide deformylase [Oceanicola granulosus HTCC2516] Length = 162 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 93/163 (57%), Gaps = 2/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P V++P LR + P+ +++ + + D M+E M + G GLAA Q+G+ RL V+ Sbjct: 1 MSRPFVMWPHKALRTRAAPVAQVDDAVRAIWDEMVEAMEAMPGYGLAAPQLGIGLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D R + NP+++ S + ++E ++P A +KR +TVR+++ + Sbjct: 61 DA--STARGKAVRLANPELLHASVELREHEEASPNLPGVGAALKRPRAVTVRFLNAAGET 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + GL AT +QH+LDHL+G ++ D LSR +R+M+ K+ K Sbjct: 119 EERDFVGLWATSVQHQLDHLDGRMYFDRLSRTRREMLLKRARK 161 >gi|315924512|ref|ZP_07920733.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622216|gb|EFV02176.1| peptide deformylase [Pseudoramibacter alactolyticus ATCC 23263] Length = 172 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 64/170 (37%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L + DPILR+ +R I +IN I L +MLE MY DG+GLAA Q+GVL +LVV Sbjct: 1 MAIRKLRYYDDPILRKRAREITEINDRIKTLAADMLETMYDDDGVGLAAPQVGVLRQLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + P+ INP+I++ S + CLS PD V+R ++T R+ + Q Sbjct: 61 I-----DVGQGPITMINPEIVSQSGSIVDSEG-CLSFPDEAGYVERPEYVTARFTNLEGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD--MITKKMSKLVQL 168 + LLA + HELDHL G +FID +++ MI ++ +L + Sbjct: 115 RCEVKGHMLLARAICHELDHLKGEVFIDKKIPVEKAEVMIAEQEKRLAKE 164 >gi|239917583|ref|YP_002957141.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|281413931|ref|ZP_06245673.1| peptide deformylase [Micrococcus luteus NCTC 2665] gi|239838790|gb|ACS30587.1| peptide deformylase [Micrococcus luteus NCTC 2665] Length = 191 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPV-PAGADVRALVADMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP + T EGCLS+P R R A VR D + Sbjct: 60 FD-----VAGVAGHVVNPVLETAGQALREPGEGCLSVPGLRYHPARDAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145 >gi|254384297|ref|ZP_04999640.1| peptide deformylase 2 [Streptomyces sp. Mg1] gi|194343185|gb|EDX24151.1| peptide deformylase 2 [Streptomyces sp. Mg1] Length = 185 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 73/149 (48%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + + DP+L + + + LI++M MY+ +G+GLAA QIGV R+ V D Sbjct: 13 VRTMSLLGDPVLHSACAEVTEFGPVLDRLIEDMFATMYAAEGVGLAANQIGVGQRVFVYD 72 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 D ++ +NP+++ D EGCLS+P A R V + + Sbjct: 73 CPDDDDVRHVGHIVNPRLVAADGDEIRGPEGCLSLPGLEAGTDRFDRAVVEGVTSDGAPV 132 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLS 151 + G A CLQHE DHL+G ++ D ++ Sbjct: 133 RVEGTGFFARCLQHECDHLDGTVYADRVT 161 >gi|82701784|ref|YP_411350.1| peptide deformylase [Nitrosospira multiformis ATCC 25196] gi|82409849|gb|ABB73958.1| Peptide deformylase [Nitrosospira multiformis ATCC 25196] Length = 177 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ DP L V+R +E + L+ +M + M + +G GLAA QIG+ ++V Sbjct: 1 MPIKPVLKMGDPRLLEVARKVENFSTPEFGALLRDMHDTMEALEGAGLAAPQIGIDLQVV 60 Query: 60 VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP + ++ EGCLS+P R V R A I Sbjct: 61 IFGVKRNLRYPDAEEVPYTVLVNPVLTPLTEYMEQDWEGCLSVPGMRGMVPRYARIRYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D +G A +QHE DHL GIL+ ++ + Sbjct: 121 SDQYGNRIDRTVEGFHARVVQHECDHLQGILYPMRITDFR 160 >gi|187932490|ref|YP_001886374.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187720643|gb|ACD21864.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] Length = 149 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + ++ DPILR+ S+ +E ++ I +++++M E MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLYDDPILRKKSKEVEVVDDKIRDILNDMAETMYNTENGAGLAAPQVGMLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + INPKII V + CLS P+ +KR + + ++ N Sbjct: 61 VIDMW-----QGLIKLINPKIIKKEGSQEVIEG-CLSNPNVFGKLKRPYKVIIEALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + G LA C HE+DHL+GILF D ++ Sbjct: 115 EEIQLTGTGDLAKCFCHEIDHLDGILFTDLVT 146 >gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 188 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 87/148 (58%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D LR+ ++ I K++ I L ML+ MYS+ GIGLAA Q+ + +L+V+D Sbjct: 17 LDIHFLGDRALRQPAKRIAKVDDSIRKLAKEMLQTMYSSQGIGLAAPQVAIQKQLIVVDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +P++ INPKI FS + V +EGCLSIP DV R I V + D + + Sbjct: 77 EPDNPANSPLILINPKITVFSKELCVVEEGCLSIPGVYLDVTRPKAIEVSFKDEQGKPRK 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A LLA +QHE+DHLNG++F+D + Sbjct: 137 IQATELLARVIQHEMDHLNGVMFVDRVD 164 >gi|261367360|ref|ZP_05980243.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570120|gb|EFB75655.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 171 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL++V RP+ K + + L+D+M E + + +G+GLA Q+G++ RL + Sbjct: 1 MALRTIVQDGDPILKKVCRPVTKFDDRLRILLDDMKETLLAANGLGLAGPQVGMMRRLFI 60 Query: 61 IDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + P FINP+I+ SD+ EGCLS P + + RS + V+ Sbjct: 61 CLDERDMPEEVPENYEYKFIEFINPEILELSDEKVELYEGCLSFPGHNGAISRSKHVKVK 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 D + + + AD +LA C+QHE +HL+GI +D Sbjct: 121 AQDRHGEWFEMEADDMLARCIQHENNHLDGITIMD 155 >gi|254414456|ref|ZP_05028222.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] gi|196178686|gb|EDX73684.1| peptide deformylase [Microcoleus chthonoplastes PCC 7420] Length = 177 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 1 MVK-KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K + +PILR++++PI+ + + I LI+ + + +G+G+AA QI RL Sbjct: 1 MTKSLEIAQLGNPILRQLAQPIDNVQDESIQKLIEALKAKAVAANGVGIAAPQISQSCRL 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ +A P INP+I+ SD EGCLSIP R V R I V Sbjct: 61 FIVASRPNPRYPNAPTMEPTAMINPQIVAHSDQVVKGWEGCLSIPGIRGLVPRYQAIEVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y + + Q +A +QHE DHLNGI+F+D + Sbjct: 121 YTNQEGKPQRQQLTDFVARIVQHEYDHLNGIVFVDRVES 159 >gi|163785969|ref|ZP_02180417.1| peptide deformylase [Flavobacteriales bacterium ALC-1] gi|159877829|gb|EDP71885.1| peptide deformylase [Flavobacteriales bacterium ALC-1] Length = 196 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + D +L++ ++ I+K + LI+NM E MY G+GLAA QIG+ RL ++ Sbjct: 1 MILPIVAYGDAVLKKKAKDIDKDYPKLNELIENMYETMYGAYGVGLAAPQIGLPIRLFLV 60 Query: 62 DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FIN +I+ D + EGCLSIPD R DV R Sbjct: 61 DTEPFAEDESFSEEEQEQLKNFKKTFINAQILEEEGDEWAFNEGCLSIPDVREDVFRQPK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I ++Y D N + I DGL+A +QHE DH+ G+LF D LS K+ +I K++ + + + Sbjct: 121 IKIQYQDENFEIHIEEYDGLIARVIQHEYDHIEGVLFTDKLSSFKKRLIKGKLTNISKGK 180 >gi|107100575|ref|ZP_01364493.1| hypothetical protein PaerPA_01001600 [Pseudomonas aeruginosa PACS2] gi|254239493|ref|ZP_04932815.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] gi|126192871|gb|EAZ56934.1| hypothetical protein PA2G_00106 [Pseudomonas aeruginosa 2192] Length = 179 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITLLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D Q +G A +QHE DHL G L+ ++ + Sbjct: 121 GLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|289663684|ref|ZP_06485265.1| peptide deformylase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 171 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S + EGCLSIP RA + R +I R + Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSGEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|257066166|ref|YP_003152422.1| peptide deformylase [Anaerococcus prevotii DSM 20548] gi|256798046|gb|ACV28701.1| peptide deformylase [Anaerococcus prevotii DSM 20548] Length = 158 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 3/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPILR+ S+ + +I I L+D+M + MY DG+GLAA Q+G+L R++V Sbjct: 1 MAIRNIRKEGDPILRKTSKLVPEITDRIKVLLDDMADTMYEADGVGLAAPQVGILKRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D +NP+II + + CLSIP++ A VKR + V+Y+D Sbjct: 61 VDPHDDTTGLVK--LVNPEIIESDGEQIGIEG-CLSIPNFNATVKRPEHLKVKYLDEEGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 +I A G A L HE+DHL+GILF D Sbjct: 118 EKIWDAHGFPAEILSHEIDHLDGILFRDK 146 >gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228] Length = 150 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + DP+LR ++ I+++N LIDNM E MY+ DG+GLAA QIG+L R+ V Sbjct: 1 MALLKVREIGDPVLRTKAKEIDEVNKKTNELIDNMFETMYAEDGVGLAAPQIGMLKRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+++ + I + ++ +EGCLSIP DV R+ I V+ ++ + Sbjct: 61 VDIREGNKV-----ILINPEIIEKEGKAIMEEGCLSIPGETGDVIRAEKIKVKSLNRKGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 A+G A +QHE+DHL+GILF+D + ++ Sbjct: 116 EVTFLAEGFEARAIQHEIDHLDGILFVDKIIKI 148 >gi|229098336|ref|ZP_04229283.1| Peptide deformylase [Bacillus cereus Rock3-29] gi|229104429|ref|ZP_04235098.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|229117353|ref|ZP_04246731.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228666253|gb|EEL21717.1| Peptide deformylase [Bacillus cereus Rock1-3] gi|228679127|gb|EEL33335.1| Peptide deformylase [Bacillus cereus Rock3-28] gi|228685234|gb|EEL39165.1| Peptide deformylase [Bacillus cereus Rock3-29] Length = 156 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV + Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLMADGVGLAAPQVGVSLQ--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 58 VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 185 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 1/164 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL- 63 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + Sbjct: 4 KIVKYPDPILRRRSEEVTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNAL 63 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +N +FINP I+ S EGCLS P V+R + +++ Y D N + Sbjct: 64 YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHL 123 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 124 KILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 167 >gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102] gi|39930836|sp|Q7U9D4|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102] Length = 201 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +LR+ +R I K+ L +ML MY+ GIGLAA Q+G+ +L+VIDL Sbjct: 31 LEIHTLGAEVLRQSARRIGKVTEQTRELARDMLRSMYTAKGIGLAAPQVGIHQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+I S Y+EGCLSIP DV R I + + D + + Sbjct: 91 DLENAATPPLVLINPEISAASASIDTYEEGCLSIPGVYLDVVRPTAIELSFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ADGL+A C+QHE+DHLNG+LF+D ++ + K++ Sbjct: 151 MKADGLMARCIQHEMDHLNGVLFVDRVTDEA--GLQKELK 188 >gi|296116575|ref|ZP_06835185.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] gi|295976787|gb|EFG83555.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769] Length = 178 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 8/172 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + + DI++L+ +M+E M G+GLAA Q+ R+ Sbjct: 1 MTLLKIARMGHPVLLRRADAVTDPTAPDIVHLVADMIETMEDAGGVGLAAPQVHRSCRVF 60 Query: 60 VIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V + D P V INP + ++ + EGCLSIP R V R + Sbjct: 61 VYRVPDTRSSGAPDDQPCGPQVLINPHLTPIGEETVLRLEGCLSIPGLRGWVPRHTRVAY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + A G LA +QHE DHLNGIL+ ++ L + +M++ Sbjct: 121 HGYDAQGRQVKGTASGFLANVMQHEYDHLNGILYPMRMNDLAKMGFDTEMAR 172 >gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] gi|238692315|sp|B3ETT4|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus 5a2] Length = 188 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + + ILR+ + PIE + +D+ LI++M M + G+GLAA QIG +L V+ Sbjct: 1 MIYPIVPYGESILRQTAAPIE-LGTDLETLIESMFITMNAAKGLGLAAPQIGKSIQLFVV 59 Query: 62 DLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 D+ + + I + + Y+EGCLSIP DV R+ + +++ Sbjct: 60 DVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTITHYEEGCLSIPGIYVDVPRNKRVRIKF 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D N Q Q + A +QHE DHL G L ID+L +R + K+ + Q R Sbjct: 120 FDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHIDYLRADRRLRLKSKLENIKQGR 174 >gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 187 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + D LR+ ++ + K++SD+ L+ ML+ MY+ DGIGLAA Q+ V +++VID Sbjct: 17 LEIYYLGDRSLRQSAKRVAKVDSDMRKLVREMLQTMYTADGIGLAAPQVNVQKQVIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I +S+D ++QEGCLSIP DV+R + I V Y D N + Q Sbjct: 77 EPTNSATPPLVLINPTIKKYSNDICLFQEGCLSIPGVYLDVQRPSEIEVAYKDENGRPQT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMS 163 + A LL+ +QHE+DHL GILF+D + ++L + K Sbjct: 137 LQAQELLSRAIQHEMDHLQGILFVDRVENKLALNEELAKYK 177 >gi|282889627|ref|ZP_06298167.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500454|gb|EFB42733.1| hypothetical protein pah_c003o012 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 178 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 99/172 (57%), Gaps = 6/172 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ PL + DPILR+ +E+I+S + L+++M+E + + GIGLAA Q+ L + Sbjct: 1 MQLPLAFYGDPILRKKCARVEQIDSQLKQLVNDMVETLEAHRGIGLAAPQVHHELNLFIT 60 Query: 62 -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 N VF+NPKI+ +S++ + Y EGCLSIP+ A V+R ITV+Y D Sbjct: 61 KVPIRYKNGKEDSGNLHVFVNPKILAYSEEKNRYTEGCLSIPNVYAPVERPLSITVQYTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR-LKRDMITKKMSKLVQ 167 + + + GL A C+ HE DH+NG+LFID + + +R + + ++ + Sbjct: 121 LDGKTCVEDFSGLEARCILHENDHINGVLFIDRIKKGNERKQLDPLLKQIKK 172 >gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii ATCC 17978] Length = 142 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 2/136 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E MY+ GIGLAA Q+ +L+V+DL + + PMVFINPK+ +++ Y+EGC Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMDLSE--SKDEPMVFINPKVTPLTEETQPYEEGC 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LS+P V R + + + ++ Q I ADGLLA C+QHE+DHLNG LF+D+LS LK Sbjct: 59 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118 Query: 155 RDMITKKMSKLVQLRD 170 R +K+ K+V+ R+ Sbjct: 119 RQRAREKVEKIVRQRE 134 >gi|163853348|ref|YP_001641391.1| peptide deformylase [Methylobacterium extorquens PA1] gi|163664953|gb|ABY32320.1| formylmethionine deformylase [Methylobacterium extorquens PA1] Length = 176 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPIRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ +++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHAV---YVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL + Sbjct: 118 DLDGAEHEEKAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171 >gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313] gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303] gi|39930996|sp|Q7V5F9|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9313] gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str. MIT 9303] Length = 201 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 93/150 (62%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + +LR+ +R I K++ + +L+ +ML MY+ GIGLAA Q+G+ +L+V+DL Sbjct: 31 LQIHTLGNGVLRQSTRRIGKVDESVRDLVRDMLRSMYAAKGIGLAAPQVGIHKQLLVLDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP+II+ S Y+EGCLSIP +V R + I + + D + + Sbjct: 91 DLETPTTPPVVLINPEIISSSATVETYEEGCLSIPGVYLNVVRPSEIVLSFRDEMGRPRK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 + ADGL+A C+QHE+DHL G+LF+D ++ Sbjct: 151 MKADGLMARCIQHEMDHLEGVLFVDRVTDE 180 >gi|297588336|ref|ZP_06946979.1| peptide deformylase [Finegoldia magna ATCC 53516] gi|297573709|gb|EFH92430.1| peptide deformylase [Finegoldia magna ATCC 53516] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ SR ++KI+ I ++D+M E MY GIGLA VQ+G+L R+VV Sbjct: 1 MALRQIRLENDPILRKKSREVKKIDDRIKQIVDDMFETMYENKGIGLACVQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+QD MV INPKI+ SD+ + EGCLS+P V+R +TV Y D + Sbjct: 61 IDMQDEDG---KMVLINPKIVERSDEKQINVEGCLSVPGKNGYVERPKTVTVEYTDLDGN 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Q A A C HELDHL+G+L+ D + ++ +++ +L + Sbjct: 118 IQRKTATDYKAHCFCHELDHLDGVLYTDKV----LNLSDEEVERLNNEK 162 >gi|83951627|ref|ZP_00960359.1| peptide deformylase [Roseovarius nubinhibens ISM] gi|83836633|gb|EAP75930.1| peptide deformylase [Roseovarius nubinhibens ISM] Length = 165 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P + +PD LR + + I + L D M+ VM + G+GLAAVQ+G ++RL V+ Sbjct: 1 MPRPCIPWPDKRLRTPAEDVAAITDETCALWDEMIAVMEAMPGVGLAAVQLGEMHRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + NP+++ S ++E ++P A + R +TVR+++ + Sbjct: 61 DASSERGQAV--RMANPEVLHASAQLREHEEASPNLPGVSAKISRPRAVTVRFLNQEGEI 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS++KRDM+ ++ KL Sbjct: 119 EERDFVGLWATSVQHQIDHLAGRMYFDRLSKVKRDMLLRRARKL 162 >gi|78049192|ref|YP_365367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926668|ref|ZP_08187982.1| peptide deformylase [Xanthomonas perforans 91-118] gi|78037622|emb|CAJ25367.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543020|gb|EGD14469.1| peptide deformylase [Xanthomonas perforans 91-118] Length = 171 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVSNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGTPIERDAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|157165463|ref|YP_001465989.1| peptide deformylase [Campylobacter concisus 13826] gi|112801795|gb|EAT99139.1| peptide deformylase [Campylobacter concisus 13826] Length = 172 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L +S+ +E + + L+D+M E M + +GIGLAA+QIGV R+ +I Sbjct: 1 MILEVLSYPNKKLYEISKEVEVFDEKLHKLLDDMYETMIAKEGIGLAAIQIGVAKRIFII 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ I + VYQEGCLS+P Y DVKRS + +++ D Sbjct: 61 NLANEEGVQDKENLIEIINPKFELREGECVYQEGCLSVPGYYEDVKRSEVVAIKFQDRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + Q + DGLLA +QHE DHL+G LFI+ + KR Sbjct: 121 KEQTLKTDGLLAIAIQHENDHLDGHLFIEKIGFNKRKKF 159 >gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101] gi|23396559|sp|Q8XJL2|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101] Length = 147 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 83/149 (55%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLA+ Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLASPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + I +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+G LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEGFLARAIQHEYDHLEGVLFIDH 145 >gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273] gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272] gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272] gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273] Length = 156 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 61 VDIDDDTG---KIELINPVILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A LA +QHE+DHL+G+LF ++R Sbjct: 117 IFLLEAKDFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|238650243|ref|YP_002916094.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] gi|238624341|gb|ACR47047.1| polypeptide deformylase [Rickettsia peacockii str. Rustic] Length = 183 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYTPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIARAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 NNKSS-PIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELS 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD++ KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDILLKKMLKHIKL 171 >gi|283456090|ref|YP_003360654.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|283102724|gb|ADB09830.1| def Peptide deformylase [Bifidobacterium dentium Bd1] Length = 153 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 PDP+LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 1 MPDPVLRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIG 60 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 V EGCLS+P +R+ + VR +D + ++ G Sbjct: 61 YVLNPVLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHG 114 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 ++ LQHE DHL+G +++D L + +R + M Q Sbjct: 115 IMGRMLQHETDHLDGHVYLDRLEKEERREAMRYMRNHRQ 153 >gi|119509174|ref|ZP_01628325.1| polypeptide deformylase [Nodularia spumigena CCY9414] gi|119466340|gb|EAW47226.1| polypeptide deformylase [Nodularia spumigena CCY9414] Length = 177 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 8/167 (4%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62 P++ DP+LR+ + +E + I LID++ + +G+G+AA Q+ YRL ++ Sbjct: 6 PIIQLGDPVLRQKAAWVENTQDKYIQKLIDDLTVTVAQANGVGIAAPQVAASYRLFIVAS 65 Query: 63 ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +A P INP+II S + EGCLS+P R V R +T+ Y D N Sbjct: 66 RPNLRYPNAPVMEPTAMINPRIIDHSTEIVKGWEGCLSVPGIRGLVPRYKHLTIAYTDRN 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK-KMSK 164 + + +A QHE DHL+G++F+D + DMIT+ + K Sbjct: 126 GKFKKQELTDFVARIFQHEYDHLDGVVFVDRVE-NSLDMITEDEYQK 171 >gi|210617214|ref|ZP_03291458.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] gi|210149415|gb|EEA80424.1| hypothetical protein CLONEX_03680 [Clostridium nexile DSM 1787] Length = 161 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + + + LI++ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRKIREIGDDVLEKVCKEVTDMTDRTKVLIEDMLDTMYDAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +EGCLS+P V R ++ V+ ++ + Sbjct: 61 IDIGEGPIILVNPEILETAGE------QTGEEGCLSLPGKSGTVTRPNYVKVKALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +GLLA HE+DHL+G L+++ + Sbjct: 115 EVVYEGEGLLARAFCHEIDHLDGHLYVEKVE 145 >gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311] gi|122945537|sp|Q0I7A5|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311] Length = 202 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D LR +R I K++ + +L +ML MY+ GIGLAA Q+GV +L+VI Sbjct: 29 APLDIHTLGDDALRGDARRIGKVDERVRDLARDMLRSMYTASGIGLAAPQVGVHQQLLVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 DL P+V INP+I T S Y+EGCLSIP DV R I + + D + Sbjct: 89 DLDFETPSTPPLVLINPEITTCSASVDTYEEGCLSIPGVYLDVVRPTAIQLSFRDEMGRP 148 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRDM 157 + + ADGL+A C+QHE+DHL G+LF+D ++ LK+++ Sbjct: 149 RTMKADGLMARCIQHEMDHLRGVLFVDRVTDAGGLKKEL 187 >gi|171058566|ref|YP_001790915.1| peptide deformylase [Leptothrix cholodnii SP-6] gi|170776011|gb|ACB34150.1| peptide deformylase [Leptothrix cholodnii SP-6] Length = 178 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + + ++ L+ ++ + M + +G G+AA QIGV +V Sbjct: 1 MPVRTILKMGDPRLLRIAQPVRRFDTPELHQLVQDLRDTMAAANGAGIAAPQIGVDLAVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP+I+ SDD EGCLS+P R V R I Sbjct: 61 IFGSAHNPRYPDAPPVPATVLVNPQIVALSDDEEDGWEGCLSVPGLRGVVPRCTRIRYSG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q ADG A +QHE DHL G L+ + R Sbjct: 121 FDPVGQLIEREADGFHARVVQHECDHLIGKLYPMRVRDFSR 161 >gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium] Length = 180 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + + DP+L ++ I I+ ++ L ++M VMY G+GLA QIGV ++ V D+ D Sbjct: 12 IRTYGDPVLAAMADEITNIDGKLVTLAEDMFRVMYQAPGLGLAGPQIGVQKQIFVYDVDD 71 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P V INPKI+ S ++ + CLSIP ++ R + V I Sbjct: 72 D-----PQVIINPKIVESSGEWVYDEG-CLSIPGLYVEMLRPKKVLVSGFTLEGDEVQIE 125 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LLA QHE+DHL G+L D + +R++ + +K Sbjct: 126 ADELLARLFQHEIDHLQGVLMFDRMLPDQRELAIVEYAK 164 >gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|6014952|sp|O83738|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238689341|sp|B2S3Z6|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14] gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Chicago] Length = 162 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 5/158 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +P L VS P+ +++ + I M VM G+GLAA Q+G R+ V+D++ H Sbjct: 6 LGEPCLTTVSEPVSEVDEQLRAFISGMFRVMRGAGGVGLAAPQVGRTVRVFVVDVEHHVR 65 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 FINP+I S++ S Y+EGCLSIP V R ++V+Y+D N + + ADG Sbjct: 66 A-----FINPQITAASEEQSSYEEGCLSIPHIYERVLRPRRVSVQYLDENGKRCAVDADG 120 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 +LA +QHE DHL+GILF+D + +RD ++ + L Sbjct: 121 ILARVIQHEYDHLDGILFLDRIDEKRRDDALRRYAALR 158 >gi|257124971|ref|YP_003163085.1| peptide deformylase [Leptotrichia buccalis C-1013-b] gi|257048910|gb|ACV38094.1| peptide deformylase [Leptotrichia buccalis C-1013-b] Length = 172 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++ P LR+ S ++ ++ ++ +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 2 KIVLYGHPTLRQKSEKVDVVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEH- 60 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 INP+I+ FSD+ +EGCLSIP V R A I V+Y++ N + + Sbjct: 61 ----DGVVKKVINPEILEFSDEIVDMEEGCLSIPGVFKKVNRPAKIKVKYLNENGKEVVE 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + + QHE DH+ GILF D LS + + ++ KK+ L + Sbjct: 117 ELEEMWSRAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKR 159 >gi|220928951|ref|YP_002505860.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219999279|gb|ACL75880.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 159 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR++SRP++ I+ I+ L+++M + MY DG+GLAA QIG+L R+VV Sbjct: 1 MAYRQIRKDGDEVLRKISRPVDSIDKKILALLEDMADTMYRADGVGLAAPQIGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + II EGCLSIP VKR +T+RY D N + Sbjct: 61 IDVGDG------LYEMINPIILEQSGEQDGMEGCLSIPGVLGKVKRPMKVTLRYTDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A A + HELDHL+GIL+ D ++ + ++M K Sbjct: 115 SITIEAKEFFARAICHELDHLDGILYKDKAHKMYTEKELEEMQK 158 >gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|39930837|sp|Q7UHZ5|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1] gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47] Length = 201 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 1/165 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ FP P LR VSRPI ++++ + ++ D ML++MY DG+GLAA Q+ + R+ V Sbjct: 1 MPLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVA 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + V +NP+I + + + CLS+P VKR + +R D Sbjct: 61 NPTGKRDEGESWVILNPEIDRPKGNDTAQEG-CLSVPGLYGQVKRPKTVRLRGFDLQGNE 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG +A +QHE+DHL+GI+F D + + + + Sbjct: 120 INQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFK 164 >gi|300934596|ref|ZP_07149852.1| polypeptide deformylase [Corynebacterium resistens DSM 45100] Length = 222 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 26/176 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+VI DP+L ++P+E ++++ LI++M E M G+GLAA Q+GV Sbjct: 1 MTIMPIVIAGDPVLHNPTKPVELQEGKAPSAELTQLINDMYETMDRAHGVGLAANQVGVD 60 Query: 56 YRLVVIDLQD---------------------HAHRKNPMVFINPKIITFSDDFSVYQEGC 94 RL V D I D + +EGC Sbjct: 61 LRLFVYHCPDIEGADGERLTEEQIEANGGPMRRGCVINPTLETSDIPETMPDEEIDEEGC 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LS+P Y R+ + V +D N Q + G A CLQHE+ HL+G L+ D L Sbjct: 121 LSVPGYSFPTGRADWARVTGLDENGQPITVEGYGFFARCLQHEVGHLDGFLYTDVL 176 >gi|70731936|ref|YP_261678.1| peptide deformylase [Pseudomonas fluorescens Pf-5] gi|68346235|gb|AAY93841.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5] Length = 179 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWELIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I S EGCLS+P R V+R I Sbjct: 61 VIFGFEHSERYPEAEAVPQTILINPLITPLSPVLEEGWEGCLSVPGLRGAVQRYQHIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + + A G A +QHE DHL G L+ +S + Sbjct: 121 GFDPRGEPIVRVASGFHARVVQHECDHLIGRLYPSRISDFSK 162 >gi|289705546|ref|ZP_06501938.1| peptide deformylase [Micrococcus luteus SK58] gi|289557775|gb|EFD51074.1| peptide deformylase [Micrococcus luteus SK58] Length = 191 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ PDP+LR + P+ +D+ L+ +M+ M++ G+GLAA Q+GV R+ V Sbjct: 1 MTVLPVRTVPDPVLRTAASPV-PAGADVRALVTDMIATMHAVGGVGLAAPQVGVGLRVFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP + T EGCLS+P R R+A VR D + Sbjct: 60 FD-----VAGVAGHVVNPVLETAGQALREPGEGCLSVPGLRYHPARAAEAVVRGTDVDGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 GLLA CLQHE DHL+GIL++D L Sbjct: 115 PVEHRGTGLLARCLQHETDHLDGILYVDRLD 145 >gi|34580422|ref|ZP_00141902.1| polypeptide deformylase [Rickettsia sibirica 246] gi|229586763|ref|YP_002845264.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|28261807|gb|EAA25311.1| polypeptide deformylase [Rickettsia sibirica 246] gi|228021813|gb|ACP53521.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 183 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 104/163 (63%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 NNKSS-PIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKKMLKHIKL 171 >gi|302540350|ref|ZP_07292692.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457968|gb|EFL21061.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 185 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 69/145 (47%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +PL + D LR + ++ + L++++ MY+ G+GLAA QIGV R+ V Sbjct: 15 TVRPLRLLGDQALRAPCEEVGDFDAALARLVEDLFATMYAAGGVGLAANQIGVGLRVFVY 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R++ +NP++ EGCLS+P + R V + + Sbjct: 75 DCPDDEDRRHLGHVVNPRLAEADGVTVRGTEGCLSLPGIESGTPRFDRAVVEGVTATGEP 134 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + G A CLQHE DHL+G LF Sbjct: 135 VRVEGSGFFARCLQHECDHLDGGLF 159 >gi|118470670|ref|YP_885236.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] gi|158512462|sp|A0QQP8|DEF_MYCS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118171957|gb|ABK72853.1| peptide deformylase [Mycobacterium smegmatis str. MC2 155] Length = 197 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 12/176 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + D+ LI +M + M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTEPVPVGPDGSLPDDLPALIQDMFDTMDAANGVGLAANQIGVA 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + ++ D +EGCLS+P R+ Sbjct: 61 KRLFVYDCAPTRGQTTRRRGVVINPVLETSEVPETMPDPDEDEEGCLSVPGENFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + V +D + + + L A LQHE HL+G L++D L K + + Sbjct: 121 WARVTGLDADGSPITLEGEDLFARMLQHETGHLDGFLYLDRLVGRYARAAKKAVKR 176 >gi|187251316|ref|YP_001875798.1| N-formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] gi|238058210|sp|B2KD65|DEF_ELUMP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|186971476|gb|ACC98461.1| N-Formylmethionyl-tRNA deformylase [Elusimicrobium minutum Pei191] Length = 176 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 6/174 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +V + + ILR+ +P++ + + ++ +M + S G GL+A QIG+ +R+ Sbjct: 1 MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRI 60 Query: 59 VVIDLQDHAH----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +I + + +K + +I +EGCLS+P +++R+ I V Sbjct: 61 AMIFIPEKTPKGEAQKFKRYVVINPVIVSKKGCVTDEEGCLSLPGLWVEIERAESIVVHC 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 ++ I+A G LA LQHE+DHL+G +FIDH + I K++ KL + Sbjct: 121 LNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKLSKN 174 >gi|153809825|ref|ZP_01962493.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] gi|149834003|gb|EDM89083.1| hypothetical protein RUMOBE_00206 [Ruminococcus obeum ATCC 29174] Length = 156 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++S+P++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRVIRTEEDPVLRKISKPVKEVTPKIITLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + + + CLS+P V R ++ V+ MD Sbjct: 61 IDVGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAMDEEMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I LLA HE+DHL+G ++ D Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTD 142 >gi|158321369|ref|YP_001513876.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] gi|158141568|gb|ABW19880.1| peptide deformylase [Alkaliphilus oremlandii OhILAs] Length = 150 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + + DPILR+ S+ +E ++ I ++++M E MY +G GLA QIG+L RLV Sbjct: 1 MALREIRLMEDPILRKKSKKVEVVDDKIRQILEDMAETMYHTENGGGLAGPQIGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ + R A + V ++ Sbjct: 61 VIDMGQGLMKLV------NPRIVKEEGTQTVIEGCLSIPNQFGKLARPAKVIVEALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I A G LA C HE+DHLNGILF D ++ Sbjct: 115 EEITITATGNLAKCFCHEIDHLNGILFTDLVT 146 >gi|56475469|ref|YP_157058.1| peptide deformylase [Aromatoleum aromaticum EbN1] gi|56311512|emb|CAI06157.1| N-formylmethionyl-tRNA deformylase 2 [Aromatoleum aromaticum EbN1] Length = 175 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ DP L + + P++ + ++ L+ ++ + M + G+GLAA QIGV ++V Sbjct: 1 MTIRTLLRMGDPRLLQPAEPVDAFGTVELAALVVDLFDTMAAHGGVGLAAPQIGVGLQMV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V +NP I + EGCLS+P R V R + I + Sbjct: 61 IFGFERSERYPDAPPVPQTVLLNPVITPLGELVEEGWEGCLSVPGLRGMVPRHSRIRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q A+G A +QHE DHL G+L+ + R Sbjct: 121 ADSQGQTIDRIAEGFHARVVQHECDHLAGVLYPMRVRDFSR 161 >gi|30021955|ref|NP_833586.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|206971120|ref|ZP_03232071.1| peptide deformylase [Bacillus cereus AH1134] gi|218232337|ref|YP_002368668.1| peptide deformylase [Bacillus cereus B4264] gi|228940955|ref|ZP_04103514.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954144|ref|ZP_04116172.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960083|ref|ZP_04121747.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228973884|ref|ZP_04134460.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980474|ref|ZP_04140784.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|229047554|ref|ZP_04193144.1| Peptide deformylase [Bacillus cereus AH676] gi|229071365|ref|ZP_04204588.1| Peptide deformylase [Bacillus cereus F65185] gi|229081122|ref|ZP_04213632.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|229111338|ref|ZP_04240891.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|229129143|ref|ZP_04258116.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|229146438|ref|ZP_04274809.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|229152066|ref|ZP_04280261.1| Peptide deformylase [Bacillus cereus m1550] gi|229180143|ref|ZP_04307487.1| Peptide deformylase [Bacillus cereus 172560W] gi|229192036|ref|ZP_04319006.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|296504362|ref|YP_003666062.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931054|sp|Q819U0|DEF1_BACCR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|78100858|pdb|1WS0|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|78100859|pdb|1WS1|A Chain A, Structure Analysis Of Peptide Deformylase From Bacillus Cereus gi|29897511|gb|AAP10787.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|206733892|gb|EDZ51063.1| peptide deformylase [Bacillus cereus AH1134] gi|218160294|gb|ACK60286.1| peptide deformylase [Bacillus cereus B4264] gi|228591587|gb|EEK49436.1| Peptide deformylase [Bacillus cereus ATCC 10876] gi|228603352|gb|EEK60829.1| Peptide deformylase [Bacillus cereus 172560W] gi|228631415|gb|EEK88049.1| Peptide deformylase [Bacillus cereus m1550] gi|228637071|gb|EEK93530.1| Peptide deformylase [Bacillus cereus BDRD-ST24] gi|228654380|gb|EEL10245.1| Peptide deformylase [Bacillus cereus BDRD-Cer4] gi|228672114|gb|EEL27405.1| Peptide deformylase [Bacillus cereus Rock1-15] gi|228702166|gb|EEL54642.1| Peptide deformylase [Bacillus cereus Rock4-2] gi|228711819|gb|EEL63771.1| Peptide deformylase [Bacillus cereus F65185] gi|228723801|gb|EEL75156.1| Peptide deformylase [Bacillus cereus AH676] gi|228779294|gb|EEM27551.1| Peptide deformylase [Bacillus thuringiensis Bt407] gi|228785909|gb|EEM33912.1| Peptide deformylase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799599|gb|EEM46552.1| Peptide deformylase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805464|gb|EEM52055.1| Peptide deformylase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818791|gb|EEM64857.1| Peptide deformylase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325414|gb|ADH08342.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941636|gb|AEA17532.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 156 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +L + + ++ L+ +M E M DG+GLAA Q+GV + Sbjct: 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 58 VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|71907756|ref|YP_285343.1| formylmethionine deformylase [Dechloromonas aromatica RCB] gi|71847377|gb|AAZ46873.1| Formylmethionine deformylase [Dechloromonas aromatica RCB] Length = 204 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M +P++ +P+L V++ + + S++ LI++M + M + G+GLAA QIG+ ++V Sbjct: 29 MAARPILRMGEPLLFEVAKAVTEFGTSELRALIEDMFDSMEAAGGVGLAAPQIGIGLQMV 88 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP I D+ + EGCLS+P R +V R I + Sbjct: 89 IFGFEKSERYPDAEAVPLTVLINPLITPVGDEEELGWEGCLSVPGLRGEVPRHTRIRYQG 148 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D +G A +QHE DHL G L+ + R Sbjct: 149 FDPEGTPIDRTVEGFHARVVQHECDHLIGRLYPSRIRDFSR 189 >gi|254252055|ref|ZP_04945373.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] gi|124894664|gb|EAY68544.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158] Length = 177 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+ P+ + + ++ ++ +M + M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEVAEPVRQFDTPELHEIVADMFDTMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPKI D EGCLS+P R V R A + Sbjct: 61 FGFGSNNRYPDAPPVPETVLINPKIEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|271967210|ref|YP_003341406.1| peptide deformylase [Streptosporangium roseum DSM 43021] gi|270510385|gb|ACZ88663.1| Peptide deformylase [Streptosporangium roseum DSM 43021] Length = 159 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 7/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLV 59 M +P+ F DP+LR V+ P+ + ++ L+ ++ M + G A Q+GV R++ Sbjct: 1 MAVQPIRPFADPVLRTVAEPVTSFDRELRGLVKSLQATMRAGAGRAGLAAPQLGVSLRVL 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +L A + +D E CLS P ++RS +T R D Sbjct: 61 VYELDGRAGHLINPRLEPSERKIVAD------EACLSAPGLWWPLERSYMVTARGRDMFG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A G+LA LQHE DHL+G+LFID L +R+ + Sbjct: 115 KPVTVRALGMLARVLQHEADHLDGVLFIDRLPEDERERFLQ 155 >gi|255323209|ref|ZP_05364344.1| peptide deformylase [Campylobacter showae RM3277] gi|255299732|gb|EET79014.1| peptide deformylase [Campylobacter showae RM3277] Length = 170 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ L S ++ + ++ +D+M E M + +GIGLAA+Q G R+++I Sbjct: 1 MILEILTYPNKKLFVKSLEVKAFDENLHKFLDDMYETMIAKNGIGLAAIQTGEAKRILII 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +L D ++ I I + +YQEGCLS+P Y DVKR+ FIT+ Y D Sbjct: 61 NLVDEESKEQRKEDLLEIINPKILRKEGEIIYQEGCLSVPGYYEDVKRAEFITLEYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + + + ADGLL+ +QHE+DHL+G LFI+ + KR K+ K Sbjct: 121 GERKELEADGLLSVAIQHEMDHLDGHLFIERIGYNKRKKFDKEYKKQKN 169 >gi|270308074|ref|YP_003330132.1| peptide deformylase [Dehalococcoides sp. VS] gi|270153966|gb|ACZ61804.1| peptide deformylase [Dehalococcoides sp. VS] Length = 167 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+S I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDSSIQTLIDDMIETMSSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V + CLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDAKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I G++A L+HE +HL+GIL+IDHL ++ Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESEEK 151 >gi|313672170|ref|YP_004050281.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] gi|312938926|gb|ADR18118.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672] Length = 168 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 94/167 (56%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++ +P+P L+ +S + KI+ + ++I ++ + M +G+AA QIG L R++ Sbjct: 1 MAIREVLTYPNPKLKEISEEVLKIDDYVRSVITDLKDTMEDAGHSVGIAAPQIGELIRVI 60 Query: 60 VIDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V+D + + I + + ++EGC+S+PDY +V R+ I V+++D Sbjct: 61 VVDPSKNPKCKEHHGPNVMINPEIIKWEGLTQFREGCMSVPDYTGNVTRAEKILVQFLDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + ++ +G A +QHE+DHL+G+LFID + + D+ +K K Sbjct: 121 NGEQKVFETEGFEAILIQHEIDHLDGVLFIDRIISKRTDLFKRKNYK 167 >gi|46446437|ref|YP_007802.1| peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46400078|emb|CAF23527.1| putative polypeptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 176 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 5/171 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K PL + D +LR+ I +IN I L+ +M+E M + DG GLAA Q+ L + Sbjct: 1 MKLPLAYYGDSVLRKKGSQIAEINDTIKQLVQDMIETMEANDGCGLAAPQVHQSLSLFIT 60 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + D VFINPKI+++S + QE CLSIP R V R +T++ D Sbjct: 61 CIPQYLENDQVIPGQVRVFINPKILSYSQEVWACQEACLSIPGMRETVSRPLKVTIQATD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N G A + HE DH+NG+L+ID L ++ I K + ++ + Sbjct: 121 LNGHTFTEEFAGFDAHVIMHENDHVNGVLYIDRLPSKRKKGIEKFLREIKK 171 >gi|326798672|ref|YP_004316491.1| peptide deformylase [Sphingobacterium sp. 21] gi|326549436|gb|ADZ77821.1| Peptide deformylase [Sphingobacterium sp. 21] Length = 189 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + LR+ + D+ + I N+ + + + G+GLAA Q+ +L V+ Sbjct: 1 MILPILAYGATNLRKACLTVSPSYPDLNSFIKNLWQTLDNAQGVGLAAPQVNENIQLFVV 60 Query: 62 D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + FINPKI+ SD+ + +EGCLSIP VKR ++ Sbjct: 61 DSRISFSSVNTEDMAQKDYPGIRQAFINPKIVAHSDEMELDEEGCLSIPGISFPVKRFSW 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 I + Y+D N Q Y G A +QHE DH+ G L ID+LS L++ MI KK++K+ R Sbjct: 121 IKMTYLDENFQLHTDYFYGRTARIIQHEYDHILGKLPIDYLSELQKLMINKKLNKIRNGR 180 >gi|166365029|ref|YP_001657302.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] gi|166087402|dbj|BAG02110.1| polypeptide deformylase [Microcystis aeruginosa NIES-843] Length = 180 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 7/177 (3%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +PIL++ + I+ + ++D NLID+++ + + G+G+AA Q+ RL Sbjct: 1 MTQVLTITQLGNPILQQKAAAIDNLLDADCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ A P INP+I+ S++ EGCLS+P+ R V R +I V Sbjct: 61 FIVASHPNPRYPDAPMMPPTAVINPRILRVSEEMVKGWEGCLSVPNLRGFVPRHQWIEVA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 Y D N + +A QHE DHL GILF+D L+ ++ K+ + + Sbjct: 121 YCDRNGREIRQVFRDFVARIFQHEYDHLEGILFLDRLASPADLYSEEEYQKISNIAE 177 >gi|226940980|ref|YP_002796054.1| Peptide deformylase [Laribacter hongkongensis HLHK9] gi|226715907|gb|ACO75045.1| Peptide deformylase [Laribacter hongkongensis HLHK9] Length = 183 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L + P+ + L++++ E M G GLAA QIG ++V Sbjct: 1 MSIRTVIKMGDPRLLLSAEPVTAFGTPQLTRLVEDLWETMKVHSGAGLAAPQIGENLQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A P V INP + EGCLS+P R V R A + + Sbjct: 61 VFGTGEPNPRYPDAGIVPPTVLINPIVTPLGASMEDGWEGCLSLPGLRGAVPRYASVRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D Q +G A +QHE DHL G L+ + + R Sbjct: 121 GFDLYGQPIDRTVEGFHARVVQHECDHLWGFLYPMRMKDMSR 162 >gi|226312666|ref|YP_002772560.1| peptide deformylase [Brevibacillus brevis NBRC 100599] gi|226095614|dbj|BAH44056.1| peptide deformylase [Brevibacillus brevis NBRC 100599] Length = 175 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M ++ +V DPILR S+ ++ I + ++D+M++ +Y+ GL+A+QIG+ RLV Sbjct: 1 MAERMIVRLGDPILRETSKRVQSITPQVEKILDDMVQTIYAAKGRAGLSAIQIGIPKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D V + E CLSIP V+R+ ++ V+ ++ Sbjct: 61 VMDCGSGLIELINPVLMEKSGEQVGQ------EACLSIPGVFGIVRRANYVKVQTLNRQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170 + + I A+ LA C+QHE+DHL GILFIDH L KK+++ L +++D Sbjct: 115 ETKTIEAEDFLARCIQHEMDHLEGILFIDHTEELYSAKTGKKLNRKDLHRIQD 167 >gi|95931365|ref|ZP_01314077.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] gi|95132581|gb|EAT14268.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684] Length = 166 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 98/166 (59%), Gaps = 6/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++++PDP L+ V RP E ++D L+ ++++ MY + +G+AA QIG+ R+ Sbjct: 1 MAVREVLVYPDPRLKEVCRPAEVGHADTAALVQDLIDTMYDSGHSVGIAAPQIGICQRVA 60 Query: 60 VIDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D+ + H + +NP II + + + C+S+PDY +V+R+ I V++ Sbjct: 61 VVDVSNSKLGKKHNHGLVTMVNPTIIESTGSKVMREG-CMSVPDYTGNVERAREIVVQFY 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D Q Q++ G A +QHELDHL+G+LF+D +S K D+ +K Sbjct: 120 DQEGQDQVMRCKGFEAVAIQHELDHLDGLLFLDRVSNPKADIFKRK 165 >gi|225574496|ref|ZP_03783106.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] gi|225038283|gb|EEG48529.1| hypothetical protein RUMHYD_02573 [Blautia hydrogenotrophica DSM 10507] Length = 174 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L + RP+E++N LID+ML+ MY G+GLAA Q+GVL R+VV Sbjct: 16 MALRQIRVEGDPVLTKKCRPVEEMNDRTRQLIDDMLDTMYEAMGVGLAAPQVGVLKRIVV 75 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLSIP +V R ++ + N + Sbjct: 76 IDVGEGPL------VMINPKIVETSGEQTGDEGCLSIPGMAGEVTRPNYVKAIAFNENME 129 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + LLA + HE DHL+GI++ H++ Sbjct: 130 EFEVEGTELLARAICHECDHLDGIMYTAHVN 160 >gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612] gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612] Length = 146 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+ +R I +IN I+ L +ML+ MY+ +G+GLAA Q+GVL +L+V Sbjct: 1 MAIRKMRVNDDPILRKKTREITEINDRIIELQKDMLDTMYAEEGVGLAAPQVGVLKQLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + IT + V +E CLS PD V+R F+TV Y D N Sbjct: 61 IDIGEGPVT------LINPEITKQEGSVVEEEACLSFPDRSGKVERPEFVTVEYTDLNGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + GL+A + HE+DHLNGI+F+D + + Sbjct: 115 RYEMECQGLMARAVCHEVDHLNGIVFLDRVIK 146 >gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|23396569|sp|Q97G95|DEF2_CLOAB RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC 824] gi|325509889|gb|ADZ21525.1| N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum EA 2018] Length = 150 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59 M + + + D ILR+ SRP+E ++ I ++D+ML+ + +G +AA Q+G+L +LV Sbjct: 1 MALRQIRLSEDEILRKKSRPVEVVDDKIRQILDDMLDTLQNTENGAAIAAPQVGILKQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI + + I + EGCLSIP+ +KR +TV ++ N Sbjct: 61 VIATGEDIIKLV------NPKIVKKEGEQEVVEGCLSIPNVYGKLKRPKKVTVEALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +G LA C HE+DHL+GILF D ++ Sbjct: 115 EKITLTGEGFLAKCFCHEIDHLDGILFTDLVT 146 >gi|125973086|ref|YP_001036996.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|256004589|ref|ZP_05429567.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281417281|ref|ZP_06248301.1| peptide deformylase [Clostridium thermocellum JW20] gi|158513246|sp|A3DCX4|DEF_CLOTH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|125713311|gb|ABN51803.1| peptide deformylase [Clostridium thermocellum ATCC 27405] gi|255991461|gb|EEU01565.1| peptide deformylase [Clostridium thermocellum DSM 2360] gi|281408683|gb|EFB38941.1| peptide deformylase [Clostridium thermocellum JW20] gi|316940693|gb|ADU74727.1| peptide deformylase [Clostridium thermocellum DSM 1313] Length = 170 Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+VS+ ++ I+ I L+D+M E MY+ +G+GLAA Q+GVL R+VV Sbjct: 1 MAVRFIREDGDEILRKVSKKVDVIDERIKTLLDDMAETMYAANGVGLAAPQVGVLKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + + EGCLSIP +VKR A + V ++ + Sbjct: 61 IDVGDGLMELINPEIVE------QEGEQIDIEGCLSIPGVAGEVKRPARVVVEALNREGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + LLA L HE+DHL+GILF D + R Sbjct: 115 KITVEGKELLAVALCHEIDHLDGILFTDKVIRF 147 >gi|237654289|ref|YP_002890603.1| peptide deformylase [Thauera sp. MZ1T] gi|237625536|gb|ACR02226.1| peptide deformylase [Thauera sp. MZ1T] Length = 174 Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L+ D L + + P+ + + LI+++ + M + G+GLAA QIGV ++V Sbjct: 1 MAVRTLLRMGDARLLQPAAPVGEFGTPALAALIEDLFDTMAAHGGVGLAAPQIGVGLQVV 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A + +NP I+ +++ EGCLS+P R V R+ I Sbjct: 61 IFGFERSERYPDAAPVPRTILLNPVIVPLTEEREEGWEGCLSVPGLRGMVPRATRIRYTG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + +A+G A +QHE DHL G+L+ + +R Sbjct: 121 YTPAGEPIERFAEGFHARVVQHECDHLAGVLYPMRVRDFRR 161 >gi|67924995|ref|ZP_00518380.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] gi|67853169|gb|EAM48543.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501] Length = 173 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 6/155 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +PILR+ ++ ++ + + L+D +L +G+G+AA Q+ YRL V+ Sbjct: 6 LEIAQVGNPILRQQAQLVQDLTDQKLQQLMDTLLTTARDANGVGIAAPQVSQSYRLFVVC 65 Query: 63 LQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + +P + INP+II+ +D+ EGCLS+P R V R ITV Y+D Sbjct: 66 SHPNPRYPDAPMMDPTIMINPRIISHNDEIVKGWEGCLSVPGVRGLVPRYKVITVEYLDR 125 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + Q +A QHELDHLNGILFID + + Sbjct: 126 YGKLQQQKLKDFVARIFQHELDHLNGILFIDRVDK 160 >gi|83816785|ref|YP_445415.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294507298|ref|YP_003571356.1| peptide deformylase [Salinibacter ruber M8] gi|123739741|sp|Q2S316|DEF_SALRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|83758179|gb|ABC46292.1| peptide deformylase [Salinibacter ruber DSM 13855] gi|294343626|emb|CBH24404.1| Peptide deformylase [Salinibacter ruber M8] Length = 195 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 9/161 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ LR + P+++ + LIDNM+E M++ GIGLAA Q+G RL V+ Sbjct: 1 MILPIYVYGHEALRNETDPVQENTEALQELIDNMIETMHNAAGIGLAAPQVGRTERLFVV 60 Query: 62 DLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 DL PMVFINP+I+ S+D + +EGCLSIP+ R V R I + Sbjct: 61 DLTPMADEIAEAGEPLPPQPMVFINPEIVEESEDTAEMEEGCLSIPEVREAVARPERIRM 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 RY D + Q + A G+L+ LQHE DHL+G+LF D+LS Sbjct: 121 RYRDREFEEQELEAGGMLSRVLQHERDHLDGVLFTDYLSSF 161 >gi|167037732|ref|YP_001665310.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256752269|ref|ZP_05493132.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|320116147|ref|YP_004186306.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687663|sp|B0KA11|DEF_THEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166856566|gb|ABY94974.1| peptide deformylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748837|gb|EEU61878.1| peptide deformylase [Thermoanaerobacter ethanolicus CCSD1] gi|319929238|gb|ADV79923.1| peptide deformylase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 159 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084] gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084] Length = 180 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V PD LR PIEKI++ + L MLE MY+T+G+GLAA Q+G L +LVVID+ Sbjct: 6 EIVTAPDERLRTECAPIEKIDNKVRLLAKRMLEDMYATEGVGLAAPQVGELVQLVVIDVD 65 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +++P V INP+++ D V EGCLS P V R + + V +D + Sbjct: 66 YADGKRSPYVLINPRVVVADGDEVVGSEGCLSFPGITVQVSRPSHVVVEALDLDGDLMRY 125 Query: 125 Y-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + LLA CLQHE+DHL+GI +DHLS +R + + Sbjct: 126 EARNNLLAVCLQHEIDHLHGITMLDHLSPARRVAAMRDYQEAK 168 >gi|225418638|ref|ZP_03761827.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] gi|225041834|gb|EEG52080.1| hypothetical protein CLOSTASPAR_05862 [Clostridium asparagiforme DSM 15981] Length = 165 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D ILR+ +P++++ LI++M E MY +G+GLAA Q+G+L +LVV Sbjct: 3 MAIRQIRTIGDEILRKQCKPVKEMTPRTAELIEDMFETMYEANGVGLAAPQVGILRQLVV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D V INP+I+ + + CLS+P V R + V+ ++ + Sbjct: 63 IDVDDGNQ----YVLINPEILETEGSQTGSEG-CLSVPGKSGTVTRPMHVKVKALNEKLE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + DGLLA + HE+ HL G L++D Sbjct: 118 PYELEGDGLLARAICHEIAHLRGELYVD 145 >gi|152983750|ref|YP_001349601.1| peptide deformylase [Pseudomonas aeruginosa PA7] gi|150958908|gb|ABR80933.1| peptide deformylase [Pseudomonas aeruginosa PA7] Length = 179 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M E M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPAESFGSQELQRLIDDMFETMRHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A P + +NP+I D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRITALDDEIEEGWEGCLSVPGLRGMVPRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +D + +G A +QHE DHL G L+ ++ Sbjct: 121 GVDPQGKPIDRSVEGFHARVVQHECDHLIGRLYPSRITDF 160 >gi|158336649|ref|YP_001517823.1| peptide deformylase [Acaryochloris marina MBIC11017] gi|158306890|gb|ABW28507.1| peptide deformylase [Acaryochloris marina MBIC11017] Length = 176 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 6/171 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +++ ++ +P LR+ + P++ +I +LID+++ M ++G+G+AA Q+G+ ++V+ Sbjct: 4 MQREVLQLGNPKLRQTACPVQNPTDLEIQSLIDDLIGTMEESNGVGIAAPQVGIDLQVVI 63 Query: 61 ID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + HA +P+ INP I + EGCLS+P R V R++ I+V Y Sbjct: 64 VASRPTLRYPHAPHMDPIAMINPHITPIGAERVKDWEGCLSVPGIRGLVPRASTISVEYQ 123 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 D N Q Q +A +QHE DHL G +FID + + + + KLV Sbjct: 124 DRNGQAQTEIFQDFVARIIQHECDHLQGYVFIDRVESTRELITENEYHKLV 174 >gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421] gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421] Length = 167 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 5/156 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ + LR+ S P+E I +I +L+ M M DGIGLAA QIG R+ V + Sbjct: 2 EILYLGEESLRQKSIPVENITEEIKDLVQKMFVTMKIKDGIGLAAPQIGKNIRIFVTGVN 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + FINP+II S+ Y+EGCLSIP V R +TV+Y + + + + + Sbjct: 62 NEQRV-----FINPQIIETSEKVCSYEEGCLSIPQIYEKVVRPETVTVQYQNIDGRRKTL 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 GLLA +QHE DHL+G+LFID + R+ K Sbjct: 117 QTTGLLARVIQHENDHLDGVLFIDRIDEKLREEAIK 152 >gi|297158757|gb|ADI08469.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 178 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 73/159 (45%), Gaps = 4/159 (2%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + +L R R + + ++ LID+M MY DG GLAA Q+GV RL V D D Sbjct: 1 MGEEVLSRPCREVTEFGTPELSALIDDMFLTMYVADGAGLAANQVGVDLRLFVYDCPDDY 60 Query: 68 HRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ INP S EGCLS+P V R+ R D + +I Sbjct: 61 GIRHVGHIINPVLDLPGPGSRRLVDDFEGCLSVPGAAMAVPRTDRAVARGFDKDGDPLVI 120 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 G A CLQHE DH+ G ++D LS+ R ++M Sbjct: 121 EGLGYFARCLQHETDHVVGHTYLDRLSKRDRKAALRQME 159 >gi|39998545|ref|NP_954496.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|39985492|gb|AAR36846.1| polypeptide deformylase [Geobacter sulfurreducens PCA] gi|298507488|gb|ADI86211.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens KN400] Length = 169 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 5/169 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + ++ +P P+L++V + I+ I LID+++E M +G+AA QIGV R+ Sbjct: 1 MPAQTILQYPHPVLKKVCHTVTAIDEAIRGLIDDLIETMREGPGSVGVAAPQIGVTLRVC 60 Query: 60 VID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 VID + ++ +NP+I+ S + + + + + Sbjct: 61 VIDVSGSRHGKDNNHGLLLMVNPEIVDRSGNAVMREGCMSVPDYTGDVERSTEVRVRFLD 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + I A G A +QHE+DHL+GILF+D + +K + +K K Sbjct: 121 GADGSEREITASGFEAVAIQHEMDHLDGILFLDRIVSIKTGLFRRKNYK 169 >gi|251772750|gb|EES53312.1| peptide deformylase [Leptospirillum ferrodiazotrophum] Length = 184 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +P+LR++S P+ K + +D+M+E M DG+GLAA Q+ V + Sbjct: 1 MALLKIAKMGNPVLRKISEPVSKEEIARPEFQRFLDDMIETMKDEDGLGLAAPQVHVSKQ 60 Query: 58 LVVIDLQDHA-----HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +V+I+ D +V INP S + EGCLS+ + R V RS + + Sbjct: 61 VVIIESLDDPRSEDGPPTPLLVLINPVFKYMSKETRTGWEGCLSLDNLRGKVTRSRAVKL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + ++ + A LQHE+DHL G LF+D + + Sbjct: 121 EALGRKGETIVLDWEEFPAVVLQHEIDHLRGHLFVDRMKDM 161 >gi|229828535|ref|ZP_04454604.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] gi|229793129|gb|EEP29243.1| hypothetical protein GCWU000342_00599 [Shuttleworthia satelles DSM 14600] Length = 160 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPIL++V RP+ K++ LID+MLE MY +G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRIDGDPILKKVCRPVSKLSDRQQELIDDMLETMYEANGVGLAAPQVGVLRRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +EGCLS+P A V R + R +D N + Sbjct: 61 IDVGEGPLVMVNPEITEKDGE------QIGEEGCLSVPGKAAIVTRPEHVIARALDRNMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + GLLA + HELDHL+G ++ + Sbjct: 115 EFSVEGTGLLARAICHELDHLDGHMYTE 142 >gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414] gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414] Length = 187 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 89/148 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ I K++ +I L ML+ MYS+DGIGLAA Q+G+ +L+VID Sbjct: 17 LTLHYLGDRVLRQDAKRIAKVDDEIRQLAREMLQTMYSSDGIGLAAPQVGIHKQLIVIDC 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + P+V INP I S + V QEGCLSIP DVKR + + Y D + + Sbjct: 77 EPDNPDHPPLVLINPTIKQMSKEVCVAQEGCLSIPKVYLDVKRPEAVEIAYKDEYGRPKT 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 + A LLA C+QHE+DHL G++F+D + Sbjct: 137 LKATDLLARCIQHEMDHLKGVVFVDRVE 164 >gi|134296033|ref|YP_001119768.1| peptide deformylase [Burkholderia vietnamiensis G4] gi|134139190|gb|ABO54933.1| peptide deformylase [Burkholderia vietnamiensis G4] Length = 177 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L ++ P+ + + ++ ++ +M E M+ +G GLAA QIG+ ++++ Sbjct: 1 MIREILKMGDPRLLEIAEPVGQFDTPELHEIVADMFETMHHANGAGLAAPQIGIGLQIII 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + A V INPK+ D EGCLS+P R V R A + Sbjct: 61 FGFGNNNRYPDAPPVPETVLINPKVEYMPPDMEEGWEGCLSVPGMRGVVSRYAKVRYVGY 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A+G A +QHE DHL G L+ ++ R Sbjct: 121 DQFGAKIDRVAEGFHARVVQHEYDHLIGKLYPMRITDFTR 160 >gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium] Length = 175 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 6/163 (3%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + ++ DP+L+ ++ I I+ +++L +NML +MY G+GLA QIGV ++ V D+ D Sbjct: 7 IRVYGDPVLKTLAASITNIDGKLVSLAENMLHIMYEAPGLGLAGPQIGVQKQIFVYDVDD 66 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P V +NP I+ S ++ + CLSIP ++ R + VR + + Sbjct: 67 D-----PQVILNPTIVESSGEWVYDEG-CLSIPGLFVEMLRPKEVLVRGLTLEGDEIEVE 120 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 AD LLA QHE+DHL G+L D + +R + + K + Sbjct: 121 ADELLARLFQHEIDHLQGVLMFDRMLPDQRKIALNEYQKHEKN 163 >gi|227489313|ref|ZP_03919629.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227540902|ref|ZP_03970951.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] gi|227090686|gb|EEI25998.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867] gi|227183162|gb|EEI64134.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866] Length = 180 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 2/162 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+VI DP+L ++P+E S LID+M E MY+ +G+GLAA Q+G+ V Sbjct: 1 MIMPIVICGDPVLHTPTQPVETPLSP--KLIDDMFETMYAANGVGLAANQVGLSQSFFVF 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + V ++ D EGCLS+P R+++ V D N Sbjct: 59 DCEGVKGVVVNPVLETSEVPETMPDEEEDLEGCLSLPGEFFPTGRASWAKVTGTDENGNP 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + LA C QHE HL G ++ D R + + Sbjct: 119 VEFEGEDFLARCFQHECGHLKGQVYTDVTIGRYRREAKRAIR 160 >gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 197 Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 13/162 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +P P+L++V+ P+ + + D+ L +ML MY GIGLAA QIG RL V+D Sbjct: 16 LLQIFTYPAPVLKKVAEPVTEFDDDLRALCKDMLFTMYHAPGIGLAAPQIGKSIRLFVMD 75 Query: 63 LQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + +H + +I+ +Y+EGCLS+P +VKR+ Sbjct: 76 IDYDREEVTRADGSSEHVLSNFNPMIFINPVISNKHGEILYEEGCLSVPGIYEEVKRAKT 135 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV Y D + I AD LL+ CLQHE DHL GI+F++ LS Sbjct: 136 ITVDYQDMWGEKHSIDADELLSICLQHENDHLEGIVFLERLS 177 >gi|120401747|ref|YP_951576.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] gi|158513127|sp|A1T320|DEF_MYCVP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|119954565|gb|ABM11570.1| peptide deformylase [Mycobacterium vanbaalenii PYR-1] Length = 197 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + P+ + +D+ +LI +M + M + G+GLAA QIGV Sbjct: 1 MAVRPIRIVGDPVLHTATEPVPVGADGSLPADLADLITDMYDTMDAAHGVGLAANQIGVS 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + +I D EGCLS+P R+ Sbjct: 61 KRVFVYDCADERKKTTRRRGVVINPVLETSEIPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + L A LQHE HL+G L++D L K + Sbjct: 121 WARVTGLDADGTPITLEGTDLFARMLQHETGHLDGFLYLDRLIGRNARSAKKTVK 175 >gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 136 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 2/136 (1%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 D+M E MY GIGLAA Q+ V R+VV+DL + PMVFINP+I +D+ YQE Sbjct: 1 DDMFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSE--PMVFINPEIEKLTDEMDQYQE 58 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 GCLS+P + +V R + V+ +D N + + A+GLLA C+QHE DHLNG LF+D+LS Sbjct: 59 GCLSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSN 118 Query: 153 LKRDMITKKMSKLVQL 168 LKRD I KK+ K +L Sbjct: 119 LKRDRIKKKLEKQHKL 134 >gi|307264799|ref|ZP_07546361.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] gi|306920057|gb|EFN50269.1| peptide deformylase [Thermoanaerobacter wiegelii Rt8.B1] Length = 159 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L++ ++P+ +IN I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYIRKNGDEVLKKKAKPVTEINPHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|207723348|ref|YP_002253747.1| polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] gi|206588547|emb|CAQ35510.1| probable polypeptide deformylase (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 181 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++ D L RV++ +++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 6 IRPILKMGDSRLLRVAQSVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIF 65 Query: 62 DL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 A V INP I SD+ EGCLS+P R V R + D Sbjct: 66 GFDRNERYPDAPAVPKTVLINPTIEALSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYD 125 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A+G A +QHE DHL GIL+ + R Sbjct: 126 QHGHAIDRVAEGFHARVVQHECDHLQGILYPMRVRDFTR 164 >gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1] gi|39930888|sp|Q8DIB4|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1] Length = 188 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 92/148 (62%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L D +LR+ ++ + K++ I ++ ML+ MYS DGIGLAA Q+G+ +++VID+ Sbjct: 17 LQLHYLGDRVLRQPAKRVSKVDDSIRDIARKMLQTMYSADGIGLAAPQVGINKQILVIDI 76 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P+V INP I FS++ V QEGCLSIP +V+R A + V Y D + Q+ Sbjct: 77 HPDDPEAEPLVMINPVIKDFSEELEVCQEGCLSIPGVYLEVRRPAMVEVSYKDEWGRPQV 136 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLS 151 I A GLLA +QHE+DHL G++F+D + Sbjct: 137 IMAGGLLARAIQHEIDHLTGVMFVDRVE 164 >gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG'] Length = 177 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 1/164 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + DP L S + +I+ +I +L+ M E++Y GIG+AA Q+G R V D+ Sbjct: 6 ILSYGDPRLLVKSTEVTRIDQEISDLVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65 Query: 66 HAHRKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + I+ + +EGCLS P V+R+ I ++ +D + ++ Sbjct: 66 RADPGSRTPVTIINPVISAKEGSITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVL 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +GL A +QHE+DHL G+L +H++R + + K++ + ++ Sbjct: 126 EGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEIRAIEKI 169 >gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2] gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2] Length = 159 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 4/141 (2%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + PD +L +V++ + KI ++ L+D+M + MY +G+GLAA Q+G+L RL+V+D D Sbjct: 2 LEPDDVLHKVAKEVTKITPNVQKLLDDMADTMYEAEGVGLAAPQVGILKRLIVVDAGDEH 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + I + + EGCLSIP DV+R+ +TV+ ++ + + A Sbjct: 62 GLIK----MINPEIVAEEGEQLGPEGCLSIPGLNGDVRRAEKVTVKGLNREGKAITVTAT 117 Query: 128 GLLATCLQHELDHLNGILFID 148 GLL+ QHE+DHLNG+LF D Sbjct: 118 GLLSRAFQHEIDHLNGVLFTD 138 >gi|220906351|ref|YP_002481662.1| peptide deformylase [Cyanothece sp. PCC 7425] gi|219862962|gb|ACL43301.1| peptide deformylase [Cyanothece sp. PCC 7425] Length = 190 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 6/170 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P+LR+ ++ + ++ I LID++L + +G+GLAA Q+G +++ ++ Sbjct: 15 VLDITQLGNPVLRQTAQFVPEVGHPQIQTLIDDLLVTVKQANGVGLAAPQVGASWQIFIV 74 Query: 62 DLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + + P INP+++ +D EGCLSIP R V R I V Y+D Sbjct: 75 ASRPNPRYPHAPEMEPTAMINPRLLAHNDQQVKDWEGCLSIPGLRGLVPRYQGIEVEYLD 134 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + + +A QHE DHLNG++F+D L + ++ KLV Sbjct: 135 RRGKTRRQQLHDFVARIFQHEQDHLNGVVFLDRLETTLELVTEQEYQKLV 184 >gi|168186792|ref|ZP_02621427.1| peptide deformylase [Clostridium botulinum C str. Eklund] gi|169295112|gb|EDS77245.1| peptide deformylase [Clostridium botulinum C str. Eklund] Length = 150 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ R + +I+ I+ LI++M E MY DG+GLAA Q+G+L RLVV Sbjct: 1 MALRNIRVDKDAILRKNCREVGEIDERILTLIEDMKETMYEADGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II + Y+ CLS+P + V R +T + ++ + Sbjct: 61 IDVGEG-----PITLINPEIIESEGSQTDYEG-CLSLPGKQGKVTRPYKVTAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I +GLLA + HELDHL+G LFID + K Sbjct: 115 QVKIKGEGLLARAICHELDHLDGTLFIDKVIEEK 148 >gi|75762657|ref|ZP_00742499.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489856|gb|EAO53230.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 156 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P+ +L + + ++ L+ +M E M DG+GLAA Q+GV + Sbjct: 1 MPVLEIVKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQ--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + D + INP I+ + + CLS P +V+R+ +I VR + + Sbjct: 58 VAVVDVDDDTGKIELINPSILEKRGEQVGPEG-CLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ A+G LA +QHE+DHL+G+LF ++R Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTR 148 >gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469] gi|255266837|gb|EET60042.1| peptide deformylase [Bryantella formatexigens DSM 14469] Length = 162 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +L + + ++++ I LID+M + MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRNVRIQGDKVLEKKCKEVKEVTPRIRTLIDDMFDTMYEEGGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + +I + EGCLS+P V R ++ VR D N Q Sbjct: 61 IDTTGE-----EPHVLINPVIEETSGEQRGYEGCLSLPGKSGIVTRPNYVRVRAFDENMQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ LLA + HE DHL GI++ + Sbjct: 116 EYVLEGTELLARAICHECDHLEGIMYTSKVE 146 >gi|300866152|ref|ZP_07110873.1| peptide deformylase [Oscillatoria sp. PCC 6506] gi|300335864|emb|CBN56033.1| peptide deformylase [Oscillatoria sp. PCC 6506] Length = 177 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 7/173 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +P+LRR ++ IE + + + LIDN++ + +G+G+AA Q+ YRL Sbjct: 1 MAEILQISQLGNPVLRRQAQTIENLEDEQLQKLIDNLIHTAQNANGVGIAAPQVAQSYRL 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ A P INP+II S+D EGCLSIP R V R I + Sbjct: 61 LIVASRPSTRYPQAPTMEPTAMINPQIIARSNDVVKDWEGCLSIPGIRGLVPRYQAIEIE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y + + +A QHE DHL+G++F+D + + M ++ + + Sbjct: 121 YTARDGKLHRQELRDFVARIFQHEYDHLDGLVFLDRVENAQELMAEEEYQEQI 173 >gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp. HF0500_35F13] Length = 194 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 1/153 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P LRR + ++++++ I M E+MY +GIGLAA Q+ + R +++ Sbjct: 3 ILHYPHPALRRKCSIVRRVDAELRETISEMYELMYEANGIGLAANQVDLPLRFFIVNTAG 62 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 +VFINP +++ + +EGCLSIP V R I V+ + Q Sbjct: 63 DRDEGEELVFINP-VLSQPEGRGEEEEGCLSIPAVYGKVMRPTTIHVQAYNLEGQPFSAE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 LA +QHE DHL+G+LF D +S + + Sbjct: 122 LSETLARVVQHETDHLDGVLFTDRISHDDKPRV 154 >gi|291458602|ref|ZP_06597992.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419135|gb|EFE92854.1| peptide deformylase [Oribacterium sp. oral taxon 078 str. F0262] Length = 169 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + + I+ + LI +ML+ MY +G+GLAA Q+GVL R+ V Sbjct: 1 MALRSIRELGDPILEKECKEIKNVTERTRELIRDMLDTMYEANGVGLAAPQVGVLRRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D ++ EGCLS+P V R + V+ D + + Sbjct: 61 IDIGDEKRYVCINPEVSVLGEELQTGP----EGCLSVPGKEGTVTRPMRVHVKAKDIDFK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 A+GLLA + HE DHLNG+++ + RD Sbjct: 117 DYEFDAEGLLARAVSHENDHLNGVMYTTRVEGELRD 152 >gi|85705032|ref|ZP_01036132.1| peptide deformylase [Roseovarius sp. 217] gi|85670354|gb|EAQ25215.1| peptide deformylase [Roseovarius sp. 217] Length = 164 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +PD LR + P+ +I L D M+ VM + G+GLAA Q+G + L V Sbjct: 1 MAPRACLRWPDKRLRMAAAPVTEITDATRALWDEMVAVMEAMPGVGLAATQLGEMQALAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D R + NP+I+ S + E +P A ++R +TVR+++ + + Sbjct: 61 VDA--STARGQAVRMANPEILHASVQLRPHDEASPCLPGVSAMIERPRGVTVRFLNADGE 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + GL AT +QH++DHL G ++ D LS +KRDM+ ++ K+ Sbjct: 119 DEERDFVGLWATSVQHQIDHLQGRMYFDRLSTVKRDMLLRRARKI 163 >gi|91792258|ref|YP_561909.1| peptide deformylase [Shewanella denitrificans OS217] gi|91714260|gb|ABE54186.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 167 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 96/158 (60%), Gaps = 5/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ P+ L+ ++ + I + +LID+ML+ +Y DGIGLAA Q+G ++ Sbjct: 1 MAVLDILKAPNEKLKVTAKKVSNI-EQVQSLIDDMLDTLYHTEDGIGLAATQVGRNEAII 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +ID+ + R +P++ INP++I ++ + CLS+P Y ADV+R + + V +D + Sbjct: 60 IIDISE--TRDSPLILINPEVIEGTNIEKGQEG-CLSVPGYYADVERFSRVKVTGLDRHG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 II D LA LQHE+DHL G+LFID+LS LK+ M Sbjct: 117 NEVIIDNDDFLAIVLQHEIDHLKGVLFIDYLSPLKQSM 154 >gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 147 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMYENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + I +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|134299448|ref|YP_001112944.1| peptide deformylase [Desulfotomaculum reducens MI-1] gi|134052148|gb|ABO50119.1| peptide deformylase [Desulfotomaculum reducens MI-1] Length = 172 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M ++ + DP LR+V +P+ +I +I+ L+++M + + + +G LAA Q+G L R+V Sbjct: 1 MPERMIGKLGDPALRKVCKPVCEITPNILQLLNDMADTLRATPNGAALAAPQVGFLRRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + INP+II S + + CLS+P VKRS F+ V+ M+ Sbjct: 61 VIDLGNE-----KIELINPEIIEKSGEQVGSEG-CLSLPGIWGRVKRSKFVKVKAMNREG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + ++ GLLA CLQHE+DHL+GIL+IDH+ Sbjct: 115 EEILVEGKGLLARCLQHEIDHLDGILYIDHV 145 >gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58] gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58] Length = 186 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P+LR ++ I +I DI +L+ +M E M + G+GLAA QIG L V+ Sbjct: 1 MIRRLEYYGSPVLREKAKEITEITEDIRSLVQDMYETMIAHKGVGLAAPQIGKSLSLFVM 60 Query: 62 DLQDHAH------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P VFINP + + S+ + EGCLSIP R +V R +TV M Sbjct: 61 CVEGETPDGELIFCDFPKVFINPVLSSPSEHLVIAYEGCLSIPGLRGEVFRPDRVTVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167 + + Q +G A + HE DHL+GIL+ID + + K+ + Sbjct: 121 NLDGQKFSETLEGFPARIVMHETDHLHGILYIDRMEEPRDAKKFKVALEKIKR 173 >gi|313207141|ref|YP_004046318.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|312446457|gb|ADQ82812.1| peptide deformylase [Riemerella anatipestifer DSM 15868] gi|315022461|gb|EFT35488.1| peptide deformylase [Riemerella anatipestifer RA-YM] gi|325335421|gb|ADZ11695.1| N-formylmethionyl-tRNA deformylase [Riemerella anatipestifer RA-GD] Length = 190 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + DP+LR+ + I ++ LI NM E M GIGLAA QIG+ RL ++ Sbjct: 1 MILPIRAYGDPVLRKKGQDITPDYPNLKELIQNMFETMEGAHGIGLAAPQIGLDIRLFIV 60 Query: 62 DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D++ + VFIN KI+ + + + EGCLSIP+ R DVKR I Sbjct: 61 DVRPLAEDEDYLDIADELKDFRKVFINAKILEETGEEWKFNEGCLSIPEVREDVKRKDTI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 T+ Y D + + + A +QHE DH+ GILF D LS Sbjct: 121 TIEYYDEDFKKHTETYSDIRARVIQHEYDHIEGILFTDKLS 161 >gi|222148494|ref|YP_002549451.1| peptide deformylase [Agrobacterium vitis S4] gi|221735480|gb|ACM36443.1| peptide deformylase [Agrobacterium vitis S4] Length = 166 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 3/163 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P P+L + + + + +++ D + M + G+G+ A +G L RLV++ Sbjct: 1 MALKILRYPHPLLAKPCQTVTAFDDRLISFADALYNAMRAAPGVGITAAHVGELMRLVIL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++NP+I++FS + + EG + +P V R IT+RY + Sbjct: 61 ---DLPELGGRRDYVNPEILSFSQNTLDHDEGSVCMPGMTETVTRPRQITLRYQSLDGTV 117 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A C+QHE+D L+G+ +I LSRLKRD + KK K Sbjct: 118 REEELQDFAAICMQHEIDQLDGLFWIQRLSRLKRDRLLKKWQK 160 >gi|188583614|ref|YP_001927059.1| peptide deformylase [Methylobacterium populi BJ001] gi|179347112|gb|ACB82524.1| formylmethionine deformylase [Methylobacterium populi BJ001] Length = 171 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 3/169 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV++PDP L R + P+ + L ++L+ + + +GL A+ IG R+VV Sbjct: 1 MPARPLVLYPDPRLHRAAGPVTASGEGVRALAADVLDTLGAVSAMGLTAIHIGRPERVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I LQ +++P ++ S + + + EG +S+P V+R A + VRY D + Sbjct: 61 IRLQPDEPHAV---YVDPVLVWASPERAAHPEGSVSMPGVVEPVERPARVRVRYRDLDGA 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A+GL A CLQHE+D L+GI +ID LSRL+R+ + K+ +KL + Sbjct: 118 EHEEEAEGLRAACLQHEIDQLDGIFWIDRLSRLRRERVLKRFAKLRTQQ 166 >gi|148266395|ref|YP_001233101.1| peptide deformylase [Geobacter uraniireducens Rf4] gi|146399895|gb|ABQ28528.1| peptide deformylase [Geobacter uraniireducens Rf4] Length = 168 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 58/168 (34%), Positives = 100/168 (59%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + ++++P PIL+++ P+ I+ I L+ ++L+ M++ +G+AA QIGV R+ Sbjct: 1 MPVQKILLYPHPILKKMCHPVAAIDRSITGLLQDLLDTMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D+ + K + IT ++ +EGC+S+PDY DV+R+ IT+R+MD Sbjct: 61 VVDVSASRNGKENNHGLLQMINPEITKRQGAAIMREGCMSVPDYTGDVERATEITIRFMD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + H I A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 121 GDGIHHEIEASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKSYK 168 >gi|295698622|ref|YP_003603277.1| peptide deformylase [Candidatus Riesia pediculicola USDA] gi|291157320|gb|ADD79765.1| peptide deformylase [Candidatus Riesia pediculicola USDA] Length = 151 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 2/149 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ +PD LR+V++P++ I S+I +L+ NM ++MY GIGLAA Q+ + R+VVI++ Sbjct: 5 LNILQYPDSRLRKVAKPVKLITSEIKDLVRNMFKIMYEKGGIGLAATQVNIHQRIVVINI 64 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + + + +E CLS+ + + RS FI V+ + + I Sbjct: 65 SQREKKDELTLINPIILSSH--GVISLEERCLSVSNRAGCILRSKFIEVKTKSLSGKEFI 122 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 +A GLL+ C+QHE+DHL+G LFID+L + Sbjct: 123 FHAKGLLSVCIQHEVDHLDGKLFIDYLRK 151 >gi|315608229|ref|ZP_07883220.1| peptide deformylase [Prevotella buccae ATCC 33574] gi|315250099|gb|EFU30097.1| peptide deformylase [Prevotella buccae ATCC 33574] Length = 181 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 I+ P+LR+V+ I + LI +M E + +++G+GLAA QIG R+ VIDL + Sbjct: 2 IYGQPVLRKVAEDITPDYPGLKELIADMFETLTASEGVGLAAPQIGKSIRIAVIDLDVLS 61 Query: 68 HRKNPMVFINPKIITFS-------DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I +EGCLSIP +V R I V+Y D + Sbjct: 62 DDLPEYKDFRKCYINPHILEFDENSKKETMEEGCLSIPGIHENVTRPTRIRVKYRDTDFV 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + +G LA +QHE DHL+G +F+D +S L++ +I K+ +++ + Sbjct: 122 EHEEWVEGYLARVMQHEFDHLDGKMFVDRISALRKSLINNKLKGILKGK 170 >gi|167040394|ref|YP_001663379.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300914478|ref|ZP_07131794.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307724286|ref|YP_003904037.1| peptide deformylase [Thermoanaerobacter sp. X513] gi|238687587|sp|B0K292|DEF_THEPX RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|166854634|gb|ABY93043.1| peptide deformylase [Thermoanaerobacter sp. X514] gi|300889413|gb|EFK84559.1| peptide deformylase [Thermoanaerobacter sp. X561] gi|307581347|gb|ADN54746.1| peptide deformylase [Thermoanaerobacter sp. X513] Length = 166 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ ++P+ +INS I+ ++++M + MY DG+GLAA QIGVL RLVV Sbjct: 1 MAIRYVRKIGDEVLRKKAKPVTEINSHILTILEDMAQTMYLNDGVGLAANQIGVLRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + V EGCLSIP +VKR + V+Y+D + Sbjct: 61 IDVGEGLLELINPEIVYEEGE------QVGAEGCLSIPGVVGEVKRPKKVKVKYLDREGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I + LLA L HE+DHLNG+LFID R Sbjct: 115 EREIEGEDLLARALCHEIDHLNGVLFIDKAIRF 147 >gi|84685502|ref|ZP_01013400.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654] gi|84666659|gb|EAQ13131.1| peptide deformylase [Rhodobacterales bacterium HTCC2654] Length = 158 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH 68 +PD LR ++P+E + ++ + D M M + G+GLAAVQ+G++ RL V+D + Sbjct: 2 WPDKRLRTAAQPVEAVTDEVRAIWDEMTLAMDAMPGVGLAAVQLGIMQRLAVVDASEERG 61 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + NP+++ S + E ++P A + R +TVR+MD + G Sbjct: 62 KAV--RMANPEVLHESVKLREHDEASPNLPGVWATISRPRAVTVRFMDETGAVREQDFVG 119 Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 L AT +QH++DHLNG ++ DHLS+LKRD + K K + Sbjct: 120 LWATSVQHQIDHLNGKMYFDHLSKLKRDRLIAKARKAKR 158 >gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 187 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 94/144 (65%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 D +LR+ ++ + KI++ + +L+ ML+ MYS DGIGLAA Q+GV +L+VID Sbjct: 21 QMGDRVLRQPAKRVAKIDNALRDLVRKMLQTMYSEDGIGLAAPQVGVNKQLLVIDADPEN 80 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 + +V +NPKII +SD+ + QEGCLSIP DV R A I V + D N + + + AD Sbjct: 81 EAASALVLVNPKIIRYSDELAAGQEGCLSIPGVYLDVIRPAAIEVSFKDENGRPRKLKAD 140 Query: 128 GLLATCLQHELDHLNGILFIDHLS 151 LLA +QHE+DHLNG+LF+D + Sbjct: 141 DLLARVIQHEMDHLNGVLFVDRVE 164 >gi|295109186|emb|CBL23139.1| peptide deformylase [Ruminococcus obeum A2-162] Length = 157 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++SRP++++ I+ LID+ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRVIRTEEDPVLRKISRPVKEVTPKIVTLIDDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P++ INP+I+ S + + + CLS+P V R ++ V+ MD + Sbjct: 61 IDIGEG-----PIILINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAMDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I LLA HE+DHL+G ++ D Sbjct: 115 EVIYEGTELLARAFCHEIDHLDGKMYTD 142 >gi|297538577|ref|YP_003674346.1| peptide deformylase [Methylotenera sp. 301] gi|297257924|gb|ADI29769.1| peptide deformylase [Methylotenera sp. 301] Length = 182 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 11/165 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ +P L + P+EK + ++ +LI ++ + M + +G G+AA QIG R+V Sbjct: 1 MAVKPVLRMGEPCLLLKAAPVEKFDTPELHSLIQDLEDTMQAMNGAGIAAPQIGESLRVV 60 Query: 60 VIDLQDHAHRKNPMV----------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + + KNP INP I DD EGCLS+P R V R Sbjct: 61 IFGQKSSDENKNPRYPDADAVPYTVLINPVITPIGDDVEDGWEGCLSVPGMRGIVPRYLR 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + D G A +QHE DHL+G+L+ + LK Sbjct: 121 LHYAGFDQYGNPIDRLVSGFHARVVQHECDHLDGVLYPMRIKNLK 165 >gi|157964561|ref|YP_001499385.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157844337|gb|ABV84838.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 189 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 65/163 (39%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 16 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 75 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 76 NNKSS-PIVFINPDITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 134 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+D+LNG +F+D+LS+LKRD + KKM K ++L Sbjct: 135 AEGFLATVIQHEIDYLNGKIFLDYLSKLKRDTLLKKMLKHIKL 177 >gi|152964372|ref|YP_001360156.1| peptide deformylase [Kineococcus radiotolerans SRS30216] gi|151358889|gb|ABS01892.1| peptide deformylase [Kineococcus radiotolerans SRS30216] Length = 200 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 7/164 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ + P+L R + P+ + D++ L+ +M M + DG+GLAA QIGV R+ V+D Sbjct: 25 VHPITRYFTPVLHRPTTPVTSFDEDLVQLVADMFASMDAADGVGLAANQIGVDARVFVVD 84 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEG-------CLSIPDYRADVKRSAFITVRYM 115 D + + + + + + CLS+P AD+ R TV Sbjct: 85 CPDDDTERTGENVVAHVVNPVLELPTGRRRRLDLDGEGCLSVPGEYADLARPDKATVTGK 144 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + I GLLA CLQHE DHL+G++++D L +R I Sbjct: 145 DVHGNPVKIVGTGLLARCLQHESDHLDGVVYVDRLPAEQRAEIL 188 >gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 169 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +PD L IE+I +I L +M E MY DGIGLAA Q+G RL+V+ Sbjct: 1 MIREILTYPDRRLAIECEEIEEITDEIRQLAADMAETMYDADGIGLAAPQVGATCRLIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ R++ +INP + + +EGCLS+P R+ V R+ + + D + Sbjct: 61 DVSGPEAREDLRTYINP-RLELLEGKVDTEEGCLSVPALRSKVTRTEKVRLHATDLDGNA 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 I ADGLL+ CLQHE+DHL+G LFID +SRLKR + K+ K + Sbjct: 120 VCIDADGLLSICLQHEIDHLDGTLFIDKISRLKRSLYDNKVKKWQK 165 >gi|255262069|ref|ZP_05341411.1| peptide deformylase [Thalassiobium sp. R2A62] gi|255104404|gb|EET47078.1| peptide deformylase [Thalassiobium sp. R2A62] Length = 164 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + V++PD LR + + +I DI + D M+E M + G+GLAAVQIGV RL V+ Sbjct: 1 MTRSYVMWPDKRLRTAASDVAEITDDIRAIWDEMIEAMDAMPGVGLAAVQIGVPLRLAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D R + NP+I+ S + +QE ++P A V R +TV++MD N + Sbjct: 61 DASD--ARGQAIRMANPEILFASAEMRTHQEASPNLPGVSAIVGRPRAVTVQFMDANGEL 118 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 GL AT +QH++DHL G ++ DH+SR KRDM+ KK +KL Sbjct: 119 VQRDLVGLWATSVQHQIDHLAGRMYFDHVSRTKRDMLIKKSAKL 162 >gi|41410016|ref|NP_962852.1| peptide deformylase [Mycobacterium avium subsp. paratuberculosis K-10] gi|254777164|ref|ZP_05218680.1| peptide deformylase [Mycobacterium avium subsp. avium ATCC 25291] gi|81700308|sp|Q73T03|DEF_MYCPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41398849|gb|AAS06468.1| Def [Mycobacterium avium subsp. paratuberculosis K-10] Length = 197 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGDDGSLPADLGKLIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D +I D EGCLS+P R++ Sbjct: 61 LRVFVYDCADDRGLTERRRGVVVNPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAS 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGNPVSIEGHGLFARMLQHETGHLDGFLYLDRL 162 >gi|302878431|ref|YP_003846995.1| peptide deformylase [Gallionella capsiferriformans ES-2] gi|302581220|gb|ADL55231.1| peptide deformylase [Gallionella capsiferriformans ES-2] Length = 175 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP++ D L V++P+ ++ + +++++M + M++ +G GLAA QIGV R+V+ Sbjct: 1 MAIKPVLRMGDARLLEVAKPVTDFSA-LQDVLNDMQDTMHALNGAGLAAPQIGVGLRVVI 59 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + D EGCLS+P R V R I + + Sbjct: 60 FGVEENSRYPDAESVPYTVLINPVVTPIDDLMEDDWEGCLSVPGLRGRVARYHAIRYQGV 119 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+G+L+ ++ L+ Sbjct: 120 DAKGAPIDRSVSGFHARVVQHECDHLDGVLYPMRMTDLR 158 >gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246] Length = 184 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P P LR ++P+ I++D+ M+E+MY ++G+GLAA Q+ + Y+++V++ Sbjct: 2 KIVRYPHPALRAKAKPVIAIDADVQKAAAQMVELMYRSEGLGLAAPQVTLDYQMIVLNPL 61 Query: 65 DH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V INP I+ +EGCLS P +V+R +TV++ + + Sbjct: 62 GEADQPDQEVVAINPVIVEAKGSTINDREGCLSFPGLYQNVRRYKTVTVKFYNLKGELVQ 121 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A L A QHE+DHL G LFID + L K + K + Sbjct: 122 TTAHDLAARVWQHEIDHLQGTLFIDKMGSLGLSRSQKDLEKFI 164 >gi|313201227|ref|YP_004039885.1| peptide deformylase [Methylovorus sp. MP688] gi|312440543|gb|ADQ84649.1| peptide deformylase [Methylovorus sp. MP688] Length = 169 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 6/151 (3%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62 DP+L + + P+ + ++ LI +M + M +G G+AA QIGV R+V+ Sbjct: 1 MGDPLLLQKAAPVTAFDTPELHALIKDMEDTMAHMNGAGIAAPQIGVSLRVVIFGVGKNP 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A + V +NP + +DD EGCLS+P R V R + D Sbjct: 61 RYPDAEQVPYTVLVNPTLQPVNDDQEDGWEGCLSVPGMRGIVPRYVRLHYTGFDQYGNPI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRL 153 G A +QHE DHL+GIL+ + L Sbjct: 121 DRLVSGFHARVVQHECDHLDGILYPMRIRDL 151 >gi|332109528|gb|EGJ10451.1| peptide deformylase [Rubrivivax benzoatilyticus JA2] Length = 188 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L RV++P+E + + L+ +M+E M + G GLAA Q+GV +LV Sbjct: 11 MPVHEILKMGDARLLRVAQPVEAFDTPALHALVADMIETMAAAHGAGLAAPQVGVDLQLV 70 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V A V NP I SD+ EGCLS+P R V R A I Sbjct: 71 VFGFERNERYPEAPAVPMTVLCNPVITPLSDETVDGWEGCLSVPGLRGVVPRFARIRYTG 130 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + A+G A +QHE DHL G L+ ++ L + Sbjct: 131 FDAQGRPIEREAEGFHARVVQHECDHLIGRLYPTRMNDLTK 171 >gi|160933492|ref|ZP_02080880.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] gi|156867369|gb|EDO60741.1| hypothetical protein CLOLEP_02338 [Clostridium leptum DSM 753] Length = 162 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D IL + RP+EK + + L+D+M E + +G+GLAA Q+G+L R+V+ Sbjct: 1 MAIRNIVKEGDGILGKKCRPVEKFDPKLWMLLDDMKETLREANGVGLAAPQVGILRRVVI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D + + I + EGCLS P V+R + + V+ + + Sbjct: 61 VNIGDEDGD----IELINPEIVEASGEQDGPEGCLSCPGEWGMVRRPSHVVVKAQNRRGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 I + L A HELDHL GILF Sbjct: 117 FFEITGEELKARAFCHELDHLEGILF 142 >gi|169631265|ref|YP_001704914.1| peptide deformylase [Mycobacterium abscessus ATCC 19977] gi|238688918|sp|B1MIN9|DEF_MYCA9 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|169243232|emb|CAM64260.1| Peptide deformylase [Mycobacterium abscessus] Length = 197 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + D+ LI NM E M + +G+GLAA QIGV Sbjct: 1 MAIVPIRIVGDPVLHTPTQPVPVGPDGSLPDDLPELIANMYETMDAANGVGLAANQIGVP 60 Query: 56 YRLVVIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D + H V +I D +EGCLS+P R+ Sbjct: 61 LRLFVYDCAETRGGGTRHRGVVINPVLETSEIPETMPDPDDDEEGCLSVPGESFPTGRAG 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + + + + L A LQHE HL+G L+ID L Sbjct: 121 WARVTGLDADGKEVTLEGNDLFARMLQHETGHLDGFLYIDKL 162 >gi|168334698|ref|ZP_02692834.1| peptide deformylase [Epulopiscium sp. 'N.t. morphotype B'] Length = 160 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DPILR+VSRP+ K + + + +++M E M S G+GLAA Q+G L R+ + Sbjct: 1 MAIRSIRVDDDPILRKVSRPVVKFDPLLHSFLNDMEETMRSASGVGLAAPQVGTLKRVFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + II F D EGCLS+P V R +T++ D Sbjct: 61 IDIGEGLVE------FINPIIIFEDGEQTGDEGCLSVPGRYGVVTRPNTVTIKAQDRYGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 H I L A + HE DHL+G +F+D Sbjct: 115 HFEITKSELFARAICHENDHLDGKIFVD 142 >gi|120611762|ref|YP_971440.1| peptide deformylase [Acidovorax citrulli AAC00-1] gi|120590226|gb|ABM33666.1| peptide deformylase [Acidovorax citrulli AAC00-1] Length = 200 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L R +RP+ + ++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 22 MAIHDILKMGDERLLRTARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 81 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P V +NP+I + EGCLS+P R V R + I R Sbjct: 82 IFGSEERNPRYPDRPLVPPTVLVNPRITPLGGEEEEDWEGCLSVPGLRGVVPRWSRIHYR 141 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +G A +QHE DHL G L+ + R Sbjct: 142 GFDEHGAPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 183 >gi|291532990|emb|CBL06103.1| peptide deformylase [Megamonas hypermegale ART12/1] Length = 168 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + D +L++ ++PIE+I+ I L+D+M E MY +G+GLAA Q+G ++VVI Sbjct: 18 AILDIKKAGDLVLKQQAQPIERIDKTIRTLLDDMAETMYKANGVGLAAPQVGQSIQVVVI 77 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ + + I + + EGCLS+P+ +V+R+A ++V Y++ + Sbjct: 78 DVGEGLLE------LINPTIIRKEGTEIDTEGCLSVPEIYGEVERAAKVSVEYLNRRGRR 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I A GLLA CLQHE+DHL+G LFID + L + Sbjct: 132 HRITATGLLARCLQHEIDHLHGRLFIDIANNLHK 165 >gi|149182344|ref|ZP_01860822.1| peptide deformylase [Bacillus sp. SG-1] gi|148849963|gb|EDL64135.1| peptide deformylase [Bacillus sp. SG-1] Length = 161 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 4/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+V +P+ IL R + + + + +D+M + M + DG+GLAA Q+G + + Sbjct: 1 MAILPIVTYPNEILEIECRKVTEFDKKLRKFLDDMYDTMIAADGVGLAAPQVGKDIAVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + +NP+++ + + CLS P+ +V R ++ V + D + Sbjct: 61 VDIGDETGT---IEMVNPEVLEVRGEQIDLEG-CLSFPNLYGEVSRPEYVKVTFQDRKGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++ A+G LA + HE+DHL+G+LF + Sbjct: 117 KLLVEAEGFLARAILHEIDHLHGVLFTSKV 146 >gi|126726108|ref|ZP_01741950.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] gi|126705312|gb|EBA04403.1| peptide deformylase [Rhodobacterales bacterium HTCC2150] Length = 165 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 1/163 (0%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + +P + +PD LR + + I+ +I + D+M++ M + G+GLAA QIGV RL V+ Sbjct: 1 MIRPTIPWPDQCLRSKANTVGDISDEIRAIWDDMIDTMEAMPGVGLAAPQIGVSLRLCVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D D + M + D+ ++E ++P A + R A +TV Y D + Sbjct: 61 DASDERGQTIRMAD-PDFVGAQGDELRDHEEASPNLPGVSAKITRPAKVTVEYTDDKGER 119 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +GL AT +QH+LDHLNG ++ D+LS+ RDM+ ++ K Sbjct: 120 VRKTLEGLWATSVQHQLDHLNGRMYFDNLSKTNRDMLLRRAKK 162 >gi|313497652|gb|ADR59018.1| Def_2 [Pseudomonas putida BIRD-1] Length = 178 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +ADG A +QHE DHL G L+ + R Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAR 162 >gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545] gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545] Length = 210 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 84/147 (57%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +P LR ++ I ++++ L D M MY +DG+GLAA Q+GV YRL+V + Sbjct: 37 LEIQKYPSAKLRDENKKIGVFDAELKKLADAMFAKMYESDGVGLAAPQVGVNYRLMVYNE 96 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +V +NPKI+ FS + +++EGCLS P ADV+R +T+ + N + Sbjct: 97 AGERGKGAEVVMVNPKIVKFSKEKDMFEEGCLSFPAIYADVERPTAVTIEAQNVNGKKFK 156 Query: 124 IYADGLLATCLQHELDHLNGILFIDHL 150 + DG A QHE DHL+G+LF D + Sbjct: 157 MTLDGFQARVFQHEYDHLDGVLFHDRM 183 >gi|32266068|ref|NP_860100.1| peptide deformylase [Helicobacter hepaticus ATCC 51449] gi|39930847|sp|Q7VIN5|DEF_HELHP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase [Helicobacter hepaticus ATCC 51449] Length = 181 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 3/152 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ +P+ +LR+ S P+E + ++ N +D+M E + + G+GLAA+Q+G R+++I Sbjct: 9 ATLAILKYPNALLRKKSIPVEIFDDNLHNFLDDMYETLIESKGVGLAAIQVGRAERILII 68 Query: 62 DLQ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ D K ++ I ++ ++EGCLS+PD+ +KR +++ Y D Sbjct: 69 NIPREEDKQQYKEDLLEIINPTFLTQEECVEWEEGCLSVPDFYESIKRFDKVSIAYKDRY 128 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +I+ A G LA +QHE+DHLNG+LF+D L Sbjct: 129 GNDRILKAQGFLAVAIQHEIDHLNGVLFVDKL 160 >gi|327398717|ref|YP_004339586.1| peptide deformylase [Hippea maritima DSM 10411] gi|327181346|gb|AEA33527.1| Peptide deformylase [Hippea maritima DSM 10411] Length = 168 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLV 59 M + +VI+PD L+ + I+ IN + + + ++LE M Y +G+AA QIG L R++ Sbjct: 1 MPVRDIVIYPDQRLKAICDEIKNINDEALQVAKDLLETMRYYNHTVGIAAPQIGELVRII 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +D + + + I +EGCLS+PDY +V R+ ITV+Y D Sbjct: 61 AVDASKNKKGQKINHGELIMINPEILDWSSIIKTREGCLSVPDYTGNVNRARKITVKYWD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + +G A +QHE+DHL+GILFID + + D+ +K Sbjct: 121 LDGKEHQFDTEGFEAVVIQHEIDHLDGILFIDRIISKRTDLFRRK 165 >gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 147 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E MY +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKILVEDMIETMYENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + I +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63] Length = 158 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V D +L + RP+ K + + +LID+M+E ++ +G+GLAA Q+G+L R+VV Sbjct: 1 MALRQIVKEGDSVLTKKCRPVVKFDDRLADLIDDMIETLHKAEGVGLAAPQVGILRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ +NPKII +S + CLSIP R ++ V+ D + Sbjct: 61 IDVGEG-----PIELVNPKIIAYSGKQETLEG-CLSIPGKWGYTVRPDYVKVKAQDRHGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +I LLA HELDHL GILF +R+ Sbjct: 115 EFVIDGKDLLAKAFCHELDHLEGILFTQVATRM 147 >gi|206901011|ref|YP_002251154.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] gi|238058219|sp|B5YF46|DEF_DICT6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|206740114|gb|ACI19172.1| peptide deformylase [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 6/148 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DPIL+ ++ +EKI+ + L +M+E M +G+GLAA Q+G R++V+ Sbjct: 1 MIREIRKVGDPILKTKAKKVEKIDEKVKELARDMIETMKFCNGVGLAAPQVGESLRIIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +D+ I EGCLS+P VKR+ I + D + + Sbjct: 61 DYEDNPIVLINPEIIEMSGEELDY------EGCLSVPGVEVPVKRAERIVFKAQDLDGRT 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149 + A GLLA +QHE+DHL+G+L +D Sbjct: 115 KKYRAKGLLARVVQHEVDHLDGMLILDR 142 >gi|326402613|ref|YP_004282694.1| peptide deformylase [Acidiphilium multivorum AIU301] gi|325049474|dbj|BAJ79812.1| peptide deformylase [Acidiphilium multivorum AIU301] Length = 184 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M L P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL Sbjct: 1 MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 60 Query: 60 VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + INP+++ + EGCLSIP A V R+A +T+ Sbjct: 61 IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 R MD A G A +QHE DHL+GIL+ L + +++++ Sbjct: 121 RAMDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFNEEVARFR 174 >gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37] gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37] Length = 165 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 1/166 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD LR S P+ ++ + L+++M E MY+ G GLAA Q+GV RL V Sbjct: 1 MSLLPILTWPDTGLRAASMPVRAPSA-VARLVEDMFETMYAAPGRGLAAPQVGVRSRLFV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D K P V INP + +E CLS+P V R I +RY D + + Sbjct: 60 MDATWKDGEKTPTVCINPVVAPLDGPEEPGEEACLSMPGVSVMVTRPTRIRLRYTDLDDK 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G A QHE DHL+G++ HL +R ++ + L Sbjct: 120 THEVVLTGAAARIAQHETDHLDGVMHFQHLPLAERGVLLAEYEALR 165 >gi|148546572|ref|YP_001266674.1| peptide deformylase [Pseudomonas putida F1] gi|148510630|gb|ABQ77490.1| peptide deformylase [Pseudomonas putida F1] Length = 178 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMFGSAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEIEDGWEGCLSVPGLRGVVPRFKHIGYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +ADG A +QHE DHL G L+ + R Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFSR 162 >gi|225848346|ref|YP_002728509.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644275|gb|ACN99325.1| peptide deformylase [Sulfurihydrogenibium azorense Az-Fu1] Length = 168 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 92/169 (54%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K P++ +PD L++ S + + ++ + MY++ G +G+AA Q+ R + Sbjct: 1 MEKLPILQYPDERLKKKSIEVVDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNNHIRTI 60 Query: 60 VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++D H+ N + + ++ I + + +++EGC+S+PDY +VKR +I V + Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKIIYGEGEIIFREGCMSVPDYTGNVKRFYYIKVEAL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N + +G A +QHE+DHL+G +FI+ + K D+ +K+ K Sbjct: 121 DENGKLITFDTEGFEAVVIQHEIDHLDGKVFIEKVVSPK-DIFKRKVYK 168 >gi|326203181|ref|ZP_08193047.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986827|gb|EGD47657.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 159 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 6/164 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + +LR++SRP+E I+ I++L+++M + MY DG+GLAA QIGVL R+VV Sbjct: 1 MAYRQIRKDGEEVLRKISRPVENIDKKILSLLEDMADTMYRADGVGLAAPQIGVLKRMVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + +I EGCLSI VKR +T++Y D N + Sbjct: 61 IDVGDG------LYEMINPVILEQSGEQDGIEGCLSILGVLGKVKRPMNVTLKYTDRNGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I A A + HELDHL+GIL+ D ++ + ++M K Sbjct: 115 DITIEASEFFARAICHELDHLDGILYKDKAYKMYTEKEFEEMQK 158 >gi|253681963|ref|ZP_04862760.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561675|gb|EES91127.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 149 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVV Sbjct: 1 MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + I+ + EGCLS+P + V R + + ++ + Sbjct: 61 IDVGDGSISLINPEIIS------YEGSQTDYEGCLSLPGKQGKVTRPYKVIAKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I +GLLA + HELDHL+G+LF+D + + ++ Sbjct: 115 EVEINGEGLLARAICHELDHLDGVLFMDKVIKEEK 149 >gi|225849674|ref|YP_002729908.1| peptide deformylase [Persephonella marina EX-H1] gi|225646510|gb|ACO04696.1| peptide deformylase [Persephonella marina EX-H1] Length = 169 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M K ++ +PD L++VS+P+E D + ++ +L M ++ G+G+AA Q+ + + Sbjct: 1 MEKFEILTYPDERLKKVSKPVEDFGRDFKDFVERLLYTMRNSPAGVGIAAPQVNRHIQTI 60 Query: 60 VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++D ++ H+ N + ++ I D V +EGCLS+PD+ +VKR +I V Sbjct: 61 IVDASEYKHKYNKTNHGLMILSNPRIIAYDGEIVIREGCLSVPDFTGNVKRHYWIKVEAE 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + +G A +QHE+DHL G LF+D + K D+ +K+ K Sbjct: 121 DIDGNTITFDTEGFEAVVIQHEMDHLKGKLFLDRVVSPK-DIFKRKVYK 168 >gi|154509286|ref|ZP_02044928.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] gi|153798920|gb|EDN81340.1| hypothetical protein ACTODO_01811 [Actinomyces odontolyticus ATCC 17982] Length = 212 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 32/182 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L RV+ P++ I+S++ +L+ +M+E M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGEPVLHRVADPVDSIDSELRDLVADMIETMHAAPGVGLAAPQVGVGAQVFV 60 Query: 61 IDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQ-------------- 91 D + ++ ++ + D Sbjct: 61 WRYGGAGSFDAQYREVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120 Query: 92 ---EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 EGCLS+P Y ++R +R D + + A G LA QHE DHL G L++D Sbjct: 121 LESEGCLSVPGYGYPLRRVLGAVLRGYDVDGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HL 150 L Sbjct: 181 RL 182 >gi|153953994|ref|YP_001394759.1| peptide deformylase [Clostridium kluyveri DSM 555] gi|219854608|ref|YP_002471730.1| hypothetical protein CKR_1265 [Clostridium kluyveri NBRC 12016] gi|146346875|gb|EDK33411.1| Hypothetical protein CKL_1369 [Clostridium kluyveri DSM 555] gi|219568332|dbj|BAH06316.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 147 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ + D +LR+ SR I+ IN I+ L+D+M E +Y G+GLAA Q+GVL R VV Sbjct: 1 MALRNVIKYGDELLRKKSRKIDVINDRILTLLDDMEETLYKECGVGLAAPQVGVLKRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + EGCLSIP+ + +VKR + V+ ++ + Sbjct: 61 IDIGEGIFKLINPEIIYSEGSYIDV------EGCLSIPEIQGEVKRPKKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 II + LLA HE+DHL+GILF+D + + Sbjct: 115 EVIIEGEDLLARAFCHEIDHLDGILFVDKMIK 146 >gi|126699364|ref|YP_001088261.1| peptide deformylase 1 [Clostridium difficile 630] gi|254975393|ref|ZP_05271865.1| peptide deformylase 1 [Clostridium difficile QCD-66c26] gi|255092782|ref|ZP_05322260.1| peptide deformylase 1 [Clostridium difficile CIP 107932] gi|255100892|ref|ZP_05329869.1| peptide deformylase 1 [Clostridium difficile QCD-63q42] gi|255314522|ref|ZP_05356105.1| peptide deformylase 1 [Clostridium difficile QCD-76w55] gi|255517197|ref|ZP_05384873.1| peptide deformylase 1 [Clostridium difficile QCD-97b34] gi|255650303|ref|ZP_05397205.1| peptide deformylase 1 [Clostridium difficile QCD-37x79] gi|255655776|ref|ZP_05401185.1| peptide deformylase 1 [Clostridium difficile QCD-23m63] gi|260683417|ref|YP_003214702.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260687013|ref|YP_003218146.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296450989|ref|ZP_06892736.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296879045|ref|ZP_06903041.1| peptide deformylase 1 [Clostridium difficile NAP07] gi|306520272|ref|ZP_07406619.1| peptide deformylase [Clostridium difficile QCD-32g58] gi|115250801|emb|CAJ68625.1| Peptide deformylase 1 (PDF 1) (Polypeptide deformylase 1) [Clostridium difficile] gi|260209580|emb|CBA63212.1| peptide deformylase 1 [Clostridium difficile CD196] gi|260213029|emb|CBE04369.1| peptide deformylase 1 [Clostridium difficile R20291] gi|296260207|gb|EFH07055.1| peptide deformylase 1 [Clostridium difficile NAP08] gi|296429918|gb|EFH15769.1| peptide deformylase 1 [Clostridium difficile NAP07] Length = 151 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+ +G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + I + + EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGEGLIKLV------NPEIIKQEGEQIVVEGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029] gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138] gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39] gi|6225254|sp|Q9Z6J2|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029] gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39] gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138] Length = 186 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 1 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + ++P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 61 CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173 >gi|294678912|ref|YP_003579527.1| peptide deformylase [Rhodobacter capsulatus SB 1003] gi|294477732|gb|ADE87120.1| peptide deformylase-1 [Rhodobacter capsulatus SB 1003] Length = 169 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 M +P + F D L + P+E I +I + +M++ M + G G LAA QIGV+ RL Sbjct: 1 MAVRPFIRFDDKRLHTAAAPVEAITDEIRAIWADMVDTMEAMPGQGVGLAAPQIGVMLRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 V+D + + NP+++ S + E ++P A + R +TVR+++ Sbjct: 61 AVVDASEARGQAIL--MANPEVLHASGQMREHDEASPNLPGVWATISRPRAVTVRFLNAA 118 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + + L AT +QH++DHLNG ++DHLS LKR M+ Sbjct: 119 GEIEERDFVHLWATSVQHQIDHLNGKTYVDHLSMLKRKML 158 >gi|255306782|ref|ZP_05350953.1| peptide deformylase 1 [Clostridium difficile ATCC 43255] Length = 151 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + F D ILR+ S+ +E +++ I ++++M E MY+ +G GLAA Q+GVL RLV Sbjct: 1 MAIRKIRTFDDEILRKKSKYVENVDNKIREILNDMAETMYNTPNGGGLAACQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL + + I + EGCLS P+ +KR +TV+ ++ Sbjct: 61 VIDLGEGLIKLVNPEIIEQEGEQIVV------EGCLSFPEVWGKLKRPKKVTVQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G +A CL HE+DHLNGI+F D + Sbjct: 115 EKIEIKGSGFMAKCLCHEIDHLNGIVFTDKI 145 >gi|226325272|ref|ZP_03800790.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] gi|225206620|gb|EEG88974.1| hypothetical protein COPCOM_03064 [Coprococcus comes ATCC 27758] Length = 156 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L +V + + K+ LID+MLE MY G+GLAA Q+G+L R+VV Sbjct: 1 MAIRKIREIGDEVLTKVCKEVTKMTPRTTELIDDMLETMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I S +EGCLS+P V R ++ +D + + Sbjct: 61 IDIGEGPV------VMINPRIVESSGEQTGEEGCLSVPGKSGIVTRPNYVKAVALDEDMK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +GL+A + HEL+HL+G L+++ + Sbjct: 115 EYEIEGEGLMARAICHELEHLDGHLYVEKVE 145 >gi|303242018|ref|ZP_07328510.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302590436|gb|EFL60192.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 160 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + + D +LR+ S+ +EKI+ I+NL+D+M E MY ++G+GLAA Q+G+L R+V Sbjct: 1 MALRQIRNYIDDDVLRKKSKVVEKIDEKILNLLDDMAETMYQSNGVGLAAPQVGILKRVV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + I+ + EGCLS+PD +VKR+ + V+ +D Sbjct: 61 VIDVGEGLIKLINPQIISMEGE------QQDIEGCLSVPDIIGEVKRANKVKVKAIDEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + GLLA HE+DHL+GILFID + Sbjct: 115 NSIELDGTGLLARAFCHEIDHLDGILFIDKI 145 >gi|108759554|ref|YP_631592.1| peptide deformylase [Myxococcus xanthus DK 1622] gi|108463434|gb|ABF88619.1| peptide deformylase [Myxococcus xanthus DK 1622] Length = 201 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + +V DP+LRR +R + + + LI+ M + M G+GLAA Q+GV R+ Sbjct: 1 MVLKIVQAGDPVLRRKARDLTPEEIASPETARLIEQMRDTMRDAPGVGLAAPQVGVGLRV 60 Query: 59 VVIDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VVI+ + V INP+++ + + EGCLS+ + A V Sbjct: 61 VVIEDRPEYQAGLSESERAARGRKPVPFHVLINPRLVVEDAAPAEFHEGCLSVSGFAALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D + Q + A G A LQHELDHL+G L++D + Sbjct: 121 PRACAVRVDALDEHGQPVTVQARGWYARILQHELDHLDGTLYVDRME 167 >gi|167035061|ref|YP_001670292.1| peptide deformylase [Pseudomonas putida GB-1] gi|166861549|gb|ABY99956.1| peptide deformylase [Pseudomonas putida GB-1] Length = 178 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + +++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGTAELQQLIDDMFETMRHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +ADG A +QHE DHL G L+ + + Sbjct: 121 GIDPQGNPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAK 162 >gi|260906787|ref|ZP_05915109.1| polypeptide deformylase [Brevibacterium linens BL2] Length = 168 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ + ++ DP+LR P+ + + L ++++ +AA QIGV R Sbjct: 1 MAERDIRLWGDPVLRSPCAPVTVFDEGLRALAQDLVDTSLPEGRAAVAAPQIGVGVRAFG 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 DL INP+++ + +EGCLS+P R F VR +D Sbjct: 61 YDLDGRTG-----YVINPEVVEVGGELRDIEEGCLSVPGLFFPTPRYEFARVRGVDAENS 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I + A LQHE+ HL+G +++ L + +R K + Sbjct: 116 PVEISGTEVFAQMLQHEVAHLDGQVYVQTLPKERRREAMKAIR 158 >gi|326316988|ref|YP_004234660.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373824|gb|ADX46093.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 179 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 7/162 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ D L R++RP+ + ++ L+ +M + M + +G GLAA QIGV ++V Sbjct: 1 MAIHDILKMGDERLLRIARPVAEFGTPSLLQLVQDMRDTMRAVNGAGLAAPQIGVDLQVV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + P V +NP+I D+ EGCLS+P R V R + I Sbjct: 61 IFGSNERNPRYPDRPLVPPTVLVNPRITPLGDEEEEDWEGCLSVPGLRGVVPRWSRIHYA 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + +G A +QHE DHL G L+ + R Sbjct: 121 GFDEHGTPIDRTVEGFHARVVQHECDHLVGKLYPMRIRDFSR 162 >gi|251780966|ref|ZP_04823886.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085281|gb|EES51171.1| peptide deformylase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 149 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 83/149 (55%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + + DPILR+ S+ +E I+ I +++++M E MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLCDDPILRKKSKEVEVIDDKIRDILNDMAETMYNTENGAGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + I + EGCLS P+ +KR + V+ ++ N Sbjct: 61 VIDMWQGLIK------LINPKIIKKEGIQEVIEGCLSSPNVFGKLKRPYKVIVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + + G LA C HE+DHL+GILF D Sbjct: 115 EEIELIGTGDLAKCFCHEIDHLDGILFTD 143 >gi|331269019|ref|YP_004395511.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329125569|gb|AEB75514.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 159 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ IE I+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKDIVTTENKLLRRKSKRIESIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + + CLS P Y V R + V ++ + Sbjct: 61 IDLRDGNG---PLILLNPKILKKIGKYEDGEG-CLSYPGYEGIVVRPRKVIVSGINEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A GL+A + HE DHL+GIL++D ++ + I + Sbjct: 117 SAQYEATGLMARAICHETDHLDGILYMDLAKKMYKIPIQDE 157 >gi|325277883|ref|ZP_08143429.1| peptide deformylase [Pseudomonas sp. TJI-51] gi|324096986|gb|EGB95286.1| peptide deformylase [Pseudomonas sp. TJI-51] Length = 178 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ + ++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRVAAPVPAQLLGSGELQQLIDDMFETMRHVGGVGLAAPQVGIELQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSTELEDGWEGCLSVPGLRGVVPRFKHICYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +A+G A +QHE DHL G L+ + + Sbjct: 121 GIDPQGNAIRRFAEGFHARVVQHECDHLIGRLYPSRIQDFTK 162 >gi|255525653|ref|ZP_05392586.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296185413|ref|ZP_06853823.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510639|gb|EET86946.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296050247|gb|EFG89671.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 151 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +LR+ SR +E I+ I+ L+D+M E MY DG+GLA Q+G+L R+VV Sbjct: 1 MALRNIRKYGDDLLRKKSRKVENIDDRIVTLLDDMAETMYDADGVGLAGPQVGILKRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I+ + + +EGCLS+P + V+R + V+ ++ + Sbjct: 61 IDVGEGILKLINPEIIST------EGSYIDEEGCLSVPGEQGKVERPYKVKVKALNEKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I+ + LLA L HE+DHL GILF+D + Sbjct: 115 EIIVEGEELLARALCHEIDHLEGILFVDKI 144 >gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39930846|sp|Q7VED2|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 203 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + LR+ ++ I K++ +I +L+ ML MY+ GIGLAA QIG +L+VIDL Sbjct: 31 LEIHTLGNSALRQSAKRISKVDKNIRDLVKKMLHSMYAAKGIGLAAPQIGSQQQLLVIDL 90 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 P++ INP+I FS Y+EGCLSIP DV R + I V + D + + Sbjct: 91 DIENSATPPIILINPEITEFSATIDTYEEGCLSIPGVYLDVIRPSSIKVNFRDEMGRPKK 150 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL-VQLRD 170 I ADGLLA C+QHE+DHLNG+LF+D + + + K++ + + +D Sbjct: 151 INADGLLARCIQHEMDHLNGVLFVDRA--INEEALNKELKEHGFKKKD 196 >gi|160939813|ref|ZP_02087160.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] gi|158437247|gb|EDP15012.1| hypothetical protein CLOBOL_04704 [Clostridium bolteae ATCC BAA-613] Length = 161 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++ +N M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDEILTKKCKPVKAMNDRTMELIEDMFETMYQANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + IT +D EGCLS+P V R ++ V+ ++ N + Sbjct: 61 IDVDDGN-----QYVLINPEITATDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALNENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE HL G ++++ Sbjct: 116 PYELEGEGLLARAICHECAHLEGQMYVE 143 >gi|291522865|emb|CBK81158.1| peptide deformylase [Coprococcus catus GD/7] Length = 159 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L DP+L +V + ++++ + L+ +MLE MY+ +G+GLAA Q+GVL R+ V Sbjct: 1 MAIRKLRYEGDPVLGKVCKEVKEMTPHLKELVQDMLETMYAAEGVGLAAPQVGVLRRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P VF+NPKI+ + + + CLS+P V+R ++ D + Sbjct: 61 IDVGEG-----PYVFVNPKIVETAGEQIGDEG-CLSVPGKSGTVRRPEYVKTVAFDADMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + GL A + HE DHL+G L+++ + Sbjct: 115 PIEVEGHGLFARAMCHEFDHLDGHLYLEKVE 145 >gi|297560923|ref|YP_003679897.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845371|gb|ADH67391.1| peptide deformylase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 5/170 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + + +L R + ++++ LID+M MY+ +G+GLA Q+GV R+ Sbjct: 31 VRRITVTGEEVLHRRGVDVAPQMWGSAELAGLIDDMFVTMYAAEGVGLAGSQVGVDLRVF 90 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V D D ++ +NP + D V EGCLS+P AD+ R+ TVR +D Sbjct: 91 VYDCPDDDGVRHVGHVVNPVLDERDPDDAVVVESEGCLSVPGPHADLGRAEHATVRGVDR 150 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + ++ G A CLQHE DH G L++D LS +R + KKM+++ Sbjct: 151 DGNPVVVSGSGYFARCLQHETDHTLGRLYVDRLSARERKRVLKKMNEMAN 200 >gi|317106741|dbj|BAJ53237.1| JHL06P13.18 [Jatropha curcas] Length = 274 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++ M G+GLAA QIGV R++V+ Sbjct: 87 DIVKAGDPVLHEPAREVDPEEIGSERIQKIIDDMIKAMRMAPGVGLAAPQIGVPLRIIVL 146 Query: 62 DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + R P +NPK+ S+ + + EGCLS+ +RA V+R Sbjct: 147 EDTKEYIRYAPKEETKAQDRRPFDLLVILNPKLEKKSNRTAFFFEGCLSVDGFRAVVERY 206 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + V + Q + A G A LQHE DHL+G L++D + I Sbjct: 207 LDVEVTGLSRYGQPIKVNASGWQARILQHECDHLDGTLYVDKMVPRTFRTIE 258 >gi|291167035|gb|EFE29081.1| peptide deformylase [Filifactor alocis ATCC 35896] Length = 147 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +LR+VSRP+ ++ I LI +M++ MY DG+GLAA Q+GVL R++V Sbjct: 1 MAIREVRIDGDEVLRKVSRPVTEMTPRIEQLIGDMIDTMYQYDGVGLAAPQVGVLRRVIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + I + QEGCLSIP DVKR + V + + Sbjct: 61 IDIGEG------PMVFINPEIVEQEGEQCGQEGCLSIPGVYMDVKRPNHVVVTAKNEKME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + D LLA L HE+DHLNGILF D Sbjct: 115 DIRVEGDELLARALCHEIDHLNGILFKD 142 >gi|148380578|ref|YP_001255119.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|148290062|emb|CAL84181.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] Length = 156 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 1 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 61 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 117 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 151 >gi|148259391|ref|YP_001233518.1| peptide deformylase [Acidiphilium cryptum JF-5] gi|146401072|gb|ABQ29599.1| peptide deformylase [Acidiphilium cryptum JF-5] Length = 209 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M L P+L + P+ + +I L+ +M E + G+GLAA Q+ V RL Sbjct: 26 MALLKLARLGHPVLFAKAEPVADPAAPEIARLLHDMAETLADAGGVGLAAPQVHVPLRLF 85 Query: 60 VIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + INP+++ + EGCLSIP A V R+A +T+ Sbjct: 86 IYRVPESRAGGGEHDGPRGLSAVINPELVLHPGEPVEDWEGCLSIPGMSALVPRAARLTL 145 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 R +D A G A +QHE DHL+GIL+ L + +++++ Sbjct: 146 RAIDATGAPFSREAAGFHARVIQHEADHLDGILYPQRLRDPRLMGFNEEVARFR 199 >gi|298491072|ref|YP_003721249.1| peptide deformylase ['Nostoc azollae' 0708] gi|298232990|gb|ADI64126.1| peptide deformylase ['Nostoc azollae' 0708] Length = 181 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P++ +P+L + + ++ I + I LI +++ +Y + +G+AA Q+ +RL ++ Sbjct: 10 PIIQLGNPMLVQKAAWVDNIQDEHIQKLIGDLIFTVYQANSVGIAAPQVAESHRLFIVAS 69 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 A P INPKII +S + EGCLS+P R V R I + Y D N Sbjct: 70 RPNTRYPDAPEMKPTAMINPKIIAYSTEVIKGWEGCLSVPGIRGLVPRYQKIEIEYNDRN 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + Q +A QHE DHL G +F+D + + M + Sbjct: 130 GKIQKQELTDFIARIFQHEYDHLEGKVFLDRVESTEELMTESEYQ 174 >gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly] gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1] gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly] gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1] Length = 165 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ +E I+ ++ ++I M+ +M + G+GLAA Q+G+ + V+ Sbjct: 2 EIVFYPDDLLRVQTKDVENIDDELRSIIFEMIGLMDKSKGVGLAAPQVGLDLSIFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I + S + SVY+EGCLSIP D+ R I + D N + I Sbjct: 60 -KNMMSKPLVFINPVITSKSVELSVYKEGCLSIPGVYYDLSRPKSIVIEAYDENGKFFKI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +LA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 119 EDLDILARIIQHEMDHLKGVLFIDYYEDKLRNKLLKSYLKERRL 162 >gi|57234458|ref|YP_181493.1| peptide deformylase [Dehalococcoides ethenogenes 195] gi|123759709|sp|Q3Z8F6|DEF_DEHE1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|57224906|gb|AAW39963.1| peptide deformylase [Dehalococcoides ethenogenes 195] Length = 167 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+PILR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RL+V Sbjct: 1 MAIRRICELPEPILRKKAKKVPSIDGSIQTLIDDMIETMKSADGAGLAAPQVGVSLRLIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V + CLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDAKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 I G++A L+HE +HL+GIL+IDHL ++ Sbjct: 117 AFRIKGTGVVAQLLEHETEHLDGILYIDHLESEEK 151 >gi|166032719|ref|ZP_02235548.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] gi|166027076|gb|EDR45833.1| hypothetical protein DORFOR_02434 [Dorea formicigenerans ATCC 27755] Length = 156 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + + K++ LI++ML+ MY G+GLAA Q+GVL R+VV Sbjct: 1 MAIREIRVLGDDVLTKHCKEVTKMSIRTKILIEDMLDTMYEAMGVGLAAPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +EGCLS+P V R ++ VR +D + Sbjct: 61 IDVGEGPIILINPEILETSGE------QTGEEGCLSVPGKCGQVTRPNYVKVRALDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA HE+DHL+G +++D Sbjct: 115 EFEMEGEGLLARAFCHEIDHLDGKMYVD 142 >gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299] Length = 257 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 90/162 (55%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P LR ++ + +SD+ L M ++MY T+G+GLAA Q+GV YR++V + Sbjct: 86 IQKYPHASLRNDNKIVGVFDSDLEKLAQAMFKIMYDTEGVGLAAPQVGVNYRMMVYNEAG 145 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 R +V +NPKI+ FS +++EGCLS P ADV+R + V + + + Sbjct: 146 EPGRGKEVVLVNPKIVKFSKTKDLFEEGCLSFPKIYADVERPTSVQVEAQNLRGKKFKMT 205 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DG A QHE DHL+G+LF D ++ R + ++ L++ Sbjct: 206 LDGFEARVFQHEYDHLDGVLFHDRMTDEVRGTVQGELDALIE 247 >gi|218960357|ref|YP_001740132.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] gi|167729014|emb|CAO79925.1| polypeptide deformylase [Candidatus Cloacamonas acidaminovorans] Length = 186 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 87/165 (52%), Gaps = 1/165 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ ++ D LR+ I+ + I++++ MY+ DGIG+AA Q+G YR++VID Sbjct: 7 ILPVRLYGDDFLRKKLPEIDYNTPGLPEFIEDLIYTMYARDGIGIAANQVGSFYRMIVID 66 Query: 63 LQDHAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + +I + VY+EGC+S+PD ADV RS IT Y D Sbjct: 67 PEQDNKLNKKSPIVMINPVIENKEGEVVYEEGCISLPDIFADVSRSKKITYSYTDRMGNR 126 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+ + A +QHE DHL GILFIDHL L R I K+ KL Sbjct: 127 ITETAEEIKAVVIQHEFDHLEGILFIDHLGTLDRLKIMHKLKKLQ 171 >gi|212639617|ref|YP_002316137.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561097|gb|ACJ34152.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 151 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 4/143 (2%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +P PIL V +P+ + ++ L+++M + M + DG+GLAA QIGV ++ ++D+ D Sbjct: 2 TYPAPILETVCQPVTVFDRKLIKLLNDMYDTMLAADGVGLAAPQIGVDQQIAIVDIGDRH 61 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 R + + II + + EGCLS P +VKR ++ VR + + I A Sbjct: 62 GR----IELINPIIVAQNGEQIGPEGCLSFPGLFGEVKRFQYVKVRAQNRRGRPFEIEAT 117 Query: 128 GLLATCLQHELDHLNGILFIDHL 150 G LA LQHE+DHL+GILF + Sbjct: 118 GFLARALQHEIDHLHGILFTSKV 140 >gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN] Length = 186 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 1 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + ++P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 61 CVDRETEDGELIFSESPRVFINPVLSDPSETLIIGKEGCLSIPGLRGEVFRPQKITVTAM 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 173 >gi|268679608|ref|YP_003304039.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268617639|gb|ACZ12004.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 182 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + PI+R V++P+ I + +I +LID M+ + G+G+AA Q+G ++++ Sbjct: 5 LEIFQLGSPIIRFVAKPVSDILDPEIQSLIDAMIFTCKESKGVGIAAPQVGHSLSIIIMA 64 Query: 63 LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + P INP+II++S+ + EGCLS+P RA V R I VRY+D Sbjct: 65 SYPNKRYPYAPLMEPTALINPEIISYSEASNKEWEGCLSLPGIRALVPRHNTIEVRYVDR 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + Q + LA QHE DHL G +FID + + ++ K+ +L+ ++ Sbjct: 125 EGKAQYAHFKDFLARLFQHEYDHLIGKVFIDRVESTQEIIMEKEYQRLMAEKE 177 >gi|224538349|ref|ZP_03678888.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] gi|224519978|gb|EEF89083.1| hypothetical protein BACCELL_03240 [Bacteroides cellulosilyticus DSM 14838] Length = 171 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ I+ +P+LR+ IEK I +I+ M + + DG GLAA QI + +L V+ Sbjct: 1 MIKPITIYGNPVLRKECVSIEKTYPGIQEVIETMWQTQRNADGCGLAAPQINLPIKLFVV 60 Query: 62 DLQDHAHRK---------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 + +D FIN +I +SD+ EGCLSIPD +V R Sbjct: 61 NSRDSYACMSIRERERFFSKDDCGIEETFINAEITGYSDEVWTTGEGCLSIPDLYEEVTR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157 IT++Y D Q+ G A +QHE +H G L+IDHLS ++ + Sbjct: 121 PWSITIKYQDKEFNEQVKVYHGYTARIIQHEFEHTEGKLYIDHLSPFRKQL 171 >gi|91205496|ref|YP_537851.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|157827211|ref|YP_001496275.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|91069040|gb|ABE04762.1| Polypeptide deformylase [Rickettsia bellii RML369-C] gi|157802515|gb|ABV79238.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 183 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ IE ++ +I +ID ML M +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQGELIEVVDDNIRTIIDKMLNTMQIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P++FINP+I FS D + E LS P A + RS I + Y+D + Q + Sbjct: 70 NNKSS-PIIFINPEITYFSSDKQTFMERSLSFPGIEAPITRSKAIKINYLDYHGNKQELE 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A LAT +QHE+D+LNG +F+DHLS+LKRD + KKM K +++ Sbjct: 129 AQDFLATVIQHEVDYLNGKVFLDHLSKLKRDTLLKKMLKYIKM 171 >gi|118475317|ref|YP_892810.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] gi|118414543|gb|ABK82963.1| peptide deformylase [Campylobacter fetus subsp. fetus 82-40] Length = 172 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I Sbjct: 1 MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ + F VYQEGCLS+P Y DVKR+ I +++ D Sbjct: 61 NLINEDEVQDKNDLLEIINPKFISKDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + + ADGLL+ +QHE DHL+G LFI+ + KR Sbjct: 121 NLKELEADGLLSVAIQHENDHLDGHLFIEKIGFNKR 156 >gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183] gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183] Length = 204 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + PILR+ S PI +I +I NL+ +M + M + G+GLAA Q+G L V+ Sbjct: 19 MIRRLEYYGSPILRKKSSPIAEITDEIRNLVSDMCDTMEAHRGVGLAAPQVGKNVSLFVM 78 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + ++P VFINP + S+ + +EGCLSIP R +V R ITV M Sbjct: 79 CVDRETEDGELIFSESPRVFINPVLSDPSETPIIGKEGCLSIPGLRGEVFRPQKITVTAM 138 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 D N + + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 139 DLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFKASLEKIKR 191 >gi|317472516|ref|ZP_07931837.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316900030|gb|EFV22023.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 157 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVV Sbjct: 1 MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + P+V INPKI+ + + CLS+P A VKR + +D + Sbjct: 61 I----DTYEGQPLVLINPKIVEKDGEQIGDEG-CLSLPGKVAVVKRPNHVVCEALDQDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +GLLA + HELDHL+G+L+ D RD+ ++ Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156 >gi|26991243|ref|NP_746668.1| peptide deformylase [Pseudomonas putida KT2440] gi|32363154|sp|Q88EA7|DEF2_PSEPK RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase [Pseudomonas putida KT2440] Length = 178 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA Q+G+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELQQLIDDMFETMRHVGGVGLAAPQVGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAEAVPQTILLNPVITPTSSEVEDGWEGCLSVPGLRGVVPRFKHICYQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D +ADG A +QHE DHL G L+ + + Sbjct: 121 GIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAK 162 >gi|257877734|ref|ZP_05657387.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] gi|257811900|gb|EEV40720.1| formylmethionine deformylase [Enterococcus casseliflavus EC20] Length = 162 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 96/167 (57%), Gaps = 6/167 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + I D EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEEDDRFEMINPEIIASSGESLDV-----EGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQ 167 + A G LA +QHE+DHLNG+LF+D L R+ + + K M + + Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKLVERIPEEDLEKYMEEHEK 162 >gi|209549461|ref|YP_002281378.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535217|gb|ACI55152.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 164 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ +S + L D++L M + G+G+ A IGV RL V Sbjct: 1 MPIRPILRYPHPGLKTVCAPVTVFDSSLAALADDLLATMRAAPGVGITAAHIGVFTRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKTDGVRL---YVNPEITWFSKETMSHAEGSVSMPGATDEVTRPRSIRFRYQDAEGG 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 AD LA C+QHE+D LNGI ++ LSRLKRD + KK K Sbjct: 118 MHEDVADDFLAICIQHEVDQLNGIFWLQRLSRLKRDRLVKKWEK 161 >gi|58580698|ref|YP_199714.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425292|gb|AAW74329.1| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 212 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 42 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 101 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I SD+ EGCLSIP RA + R +I R Sbjct: 102 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 161 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 162 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 199 >gi|84622632|ref|YP_450004.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578324|ref|YP_001915253.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] gi|242556373|pdb|3DLD|A Chain A, Crystal Structure Of Peptide Deformylase, Xoo1075, From Xanthomonas Oryzae Pv. Oryzae Kacc10331 gi|84366572|dbj|BAE67730.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522776|gb|ACD60721.1| peptide deformylase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 171 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I SD+ EGCLSIP RA + R +I R Sbjct: 61 FGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489] gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489] Length = 192 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 11/168 (6%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + + +LR+ P+E ++N ++ ++ M E M S DG+GLAA Q+G+ R V+ Sbjct: 3 ICKLGEDVLRQKCVPVESNEVNDELRATLNEMFETMISADGVGLAAPQVGISKRFFVVIS 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D+ R FINP+II S + S Y+EGCLS+P + R I+V +D N + + Sbjct: 63 DDNVRRV----FINPEIIKTSAENSEYEEGCLSLPGVSEKIVRPVKISVSAIDENGKRFV 118 Query: 124 IYA-DGLLATCLQHELDHLNGILFIDHLSRLKR----DMITKKMSKLV 166 + DGLLA +QHE DHLNGIL+ID + ++ KK + Sbjct: 119 LDDVDGLLARIIQHENDHLNGILYIDRGDEEFKNKTVELFKKKAERAQ 166 >gi|315604653|ref|ZP_07879716.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313665|gb|EFU61719.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310] Length = 210 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 32/183 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I P+L R++ P+E +S++ +L+ +M++ M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGTPVLHRLAAPVESFDSELRDLVTDMIDTMHAAPGVGLAAPQVGVGSQVFV 60 Query: 61 IDLQDHAHRKNPMV----------------------------FINPK----IITFSDDFS 88 + I+ D + Sbjct: 61 WRYAGGGAFDTHYRDVLQLDEGPARGFNTVTSGVVVNPTLDLVWDTHGAGAILPAEPDIA 120 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 EGCLS+P Y ++R+ +R D + A G LA QHE DHL G L++D Sbjct: 121 HESEGCLSVPGYGYPLRRALGAVLRGYDTRGNAIEVSARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HLS 151 L Sbjct: 181 RLD 183 >gi|166713383|ref|ZP_02244590.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 171 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ + + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R +I R Sbjct: 61 FGFEASERYPEAPAVPLTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|222056880|ref|YP_002539242.1| peptide deformylase [Geobacter sp. FRC-32] gi|221566169|gb|ACM22141.1| peptide deformylase [Geobacter sp. FRC-32] Length = 168 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 56/168 (33%), Positives = 103/168 (61%), Gaps = 4/168 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + ++++P P+L+++ P+ I+ +I L+ ++L+ M++ +G+AA QIGV R+ Sbjct: 1 MPGQKILLYPHPVLKKLCHPVGAIDGEIKGLLQDLLDCMHAGPGSVGVAAPQIGVTLRVC 60 Query: 60 VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+D+ + + K+ + +IT ++ +EGC+S+PDY DV+R+ ITVR+ D Sbjct: 61 VVDVSNSRNGKDNNHGLLQLINPVITERSGAAIMREGCMSVPDYTGDVERATEITVRFTD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + + A G A +QHE+DHL+G+LF+D ++ LK + +K K Sbjct: 121 GNGIEREVKASGFEAVAIQHEMDHLDGMLFLDRIASLKTGLFRRKNYK 168 >gi|326329902|ref|ZP_08196217.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325952293|gb|EGD44318.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 204 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 3/168 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +P+ + P++ R + +E + + L +M+ MY+ +G+GLAA QIG + V D Sbjct: 24 VRPITRWGTPVMHRPKKQVEVFDDALTELAADMVATMYAAEGVGLAADQIGEDVAIFVFD 83 Query: 63 LQDHAHRKNPMVFINPK---IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D R+ V NP V EGCLS P D R + V + + Sbjct: 84 CPDATGRRTVGVVCNPVLTLPEGDDRHLDVDLEGCLSFPGAFVDCGRPDWAAVDGLGLDG 143 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 Q +GLLA CLQHE DH NG +F D +S R +TK+ ++ Q Sbjct: 144 QPVHFEGNGLLARCLQHETDHTNGTVFGDRISAKARKKLTKEHDRVAQ 191 >gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 161 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V +P +L P++ + + L+++M + M DG+GLAA QIG+ ++ + Sbjct: 1 MAVKKIVSYPAEVLEAECEPVKVFDKKLGKLLNDMYDTMIEFDGVGLAAPQIGLSRQIAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP+I+ + + + + CLS P +V R ++ ++ D + Sbjct: 61 VDIDDEFGT---IEIINPEILETNGEQTGPEG-CLSFPGLYGEVTRPEYVKIKAQDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + A+ LA + HE+DHL+G+LF ++R Sbjct: 117 YFTLEAEDFLARAILHEIDHLHGVLFTSKVTR 148 >gi|327194673|gb|EGE61521.1| peptide deformylase protein [Rhizobium etli CNPAF512] Length = 164 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 58 VMVLELGRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163 >gi|260437318|ref|ZP_05791134.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] gi|292810230|gb|EFF69435.1| peptide deformylase [Butyrivibrio crossotus DSM 2876] Length = 168 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DPILR+V +P+++I L+ +ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 11 MALRNIRINDDPILRKVCKPVQEITKKTEELVGDMLDTMYEANGVGLAAPQVGILKRIVV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P++ INP+I+ S + + CLSIP V R ++ + D Sbjct: 71 IDIGDG-----PIIMINPEILETSGSQTGQEG-CLSIPGKAGIVTRPNYVKAKAYDLQMN 124 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA + HEL HL+G L+IDH+ Sbjct: 125 EYTIEGEELLARAICHELGHLDGDLYIDHVE 155 >gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora] gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora] Length = 201 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 3/166 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + LR ++ I +IN ++ ++ +ML MY+ GIGLAA Q+G+ +L+VI Sbjct: 29 SILEIHKLGSDKLRTSAKRIMRINEEVRDIARDMLRSMYAAKGIGLAAPQVGINKQLIVI 88 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D+ P++ INP+II + + Y+EGCLSIP DV R + I V + D Sbjct: 89 DIDLENSTTPPIILINPEIIASNASLNTYEEGCLSIPGVYLDVVRPSIIEVSFRDEQDFP 148 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL---SRLKRDMITKKMSK 164 + + DGLLA C+QHE+DHL G+LF+D + SRL+ +++ + K Sbjct: 149 RCLKTDGLLARCIQHEMDHLKGVLFVDRVKDESRLEEELVKNNLRK 194 >gi|299143971|ref|ZP_07037051.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518456|gb|EFI42195.1| peptide deformylase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 158 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 83/148 (56%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+LR++SR + K + + LI++M E M +G+GLAA Q+GVL R++ Sbjct: 1 MAYRVIRTDDDPVLRKISREVVKFDDRLKTLIEDMYETMDKAEGVGLAAPQVGVLRRVIT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D + I F + EGCLS+P+ + VKR I V+Y+D N + Sbjct: 61 VDDRTEHRFALINPE-----IIFESGTQLGYEGCLSLPNKQGKVKRFNEIKVKYLDENGE 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + I A LA LQHE+DHLNGIL+ D Sbjct: 116 KKEIEAKEYLARILQHEIDHLNGILYSD 143 >gi|289671064|ref|ZP_06492139.1| peptide deformylase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 171 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIRDIIRMGDKRLLRVAPPVTNLGSAELHALVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S++ EGCLSIP RA + R +I R + Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEEMENGWEGCLSIPGLRAVIPRYRYIRYRGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE DHL G L+ + Sbjct: 121 APDDSPIAREAEGFHARVVQHEYDHLVGRLYPSRIENF 158 >gi|168180956|ref|ZP_02615620.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668254|gb|EDT80233.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 178 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ F D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQFGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|94970942|ref|YP_592990.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] gi|94552992|gb|ABF42916.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 17/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRP--IEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 ++ LV +P+LR + P I++I S +I LI++M + + G+GLAA Q+GV +L Sbjct: 13 MRLKLVQAGEPVLRTPAEPLAIKEIASREIARLIEDMRDTLEDAPGVGLAAPQVGVPIQL 72 Query: 59 VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +I+ + + P V INP + + EGCLS+ + A V Sbjct: 73 AIIEDRAEYSKDIPTEQLAERGRVPVPFHVIINPVLKPLGKSQVDFFEGCLSVAGFIAVV 132 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R + V +D N + I A G A LQHE+DHLNG L++D + Sbjct: 133 PRYRKVRVTCLDENGAQRRIEASGWYARILQHEIDHLNGTLYVDRM 178 >gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 147 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L D ILR+ R ++ IN I L+++M+E M+ +G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNLRFNDDEILRKKCRVVDDINDRIKVLVEDMIETMHENNGVGLAAPQVGILKRIFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D D A + I +EGCLS+P VKR+ I ++ +D N Sbjct: 61 VDAMDGAGSR----VFINPEILEKSGEQTDEEGCLSLPGRHKPVKRANKIKIKALDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ A+ LA +QHE DHL G+LFIDH Sbjct: 117 EFVLDAEEFLARAIQHEYDHLEGVLFIDH 145 >gi|119485654|ref|ZP_01619929.1| polypeptide deformylase [Lyngbya sp. PCC 8106] gi|119456979|gb|EAW38106.1| polypeptide deformylase [Lyngbya sp. PCC 8106] Length = 175 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +P+LRR ++PI I + D+ LIDN++ + T+G+G+AA Q+ RL Sbjct: 1 MTEILQVAQLGNPVLRRHAQPITDIADQDLQTLIDNLIATVLKTNGVGIAAPQVSRSDRL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ + + P INPKI+ S + EGCLSIP R V R I V Sbjct: 61 LIVASRPNRRYPQAPLMAPTAMINPKIVNHSTEQEKGWEGCLSIPGVRGLVPRYQTIQVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 Y D + Q Q +A QHE DHL GI+F+D ++ + Sbjct: 121 YTDRSGQLQRQQLTDFVARIFQHEYDHLEGIVFLDRVNDEQ 161 >gi|167747883|ref|ZP_02420010.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] gi|167652705|gb|EDR96834.1| hypothetical protein ANACAC_02612 [Anaerostipes caccae DSM 14662] Length = 157 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ S+ I+++ S M LI++M + MY G+GLAA Q+G+L RLVV Sbjct: 1 MAIRNIRKMGDEVLRKPSKEIKEMTSRTMLLIEDMFDTMYEAYGVGLAAPQVGILKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + P+V INPKI+ + + CLS+P A VKR + +D + Sbjct: 61 I----DTYEGQPLVLINPKIVEKDGEQIGDEG-CLSLPGKVAVVKRPNHVVCEALDRDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + +GLLA + HELDHL+G+L+ D RD+ ++ Sbjct: 116 PIRVEGEGLLARAICHELDHLDGVLYPDVAEEPVRDVEEEE 156 >gi|323489535|ref|ZP_08094762.1| peptide deformylase [Planococcus donghaensis MPA1U2] gi|323396666|gb|EGA89485.1| peptide deformylase [Planococcus donghaensis MPA1U2] Length = 170 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V P+ +L P+ + ++ L+D+M E M +DG+G+AA Q+G R+ + Sbjct: 1 MAIRTVVKHPNKVLETNCEPVTVFDKNLSVLLDDMHETMVESDGVGIAAPQVGEAVRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + + + EGCLS P +V+R I ++ + + Sbjct: 61 V----DFREGQEPIEMVNPELVLFEGAETDIEGCLSFPGIFGEVERYDHIKIKAQERDGS 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A+G A + HE+DHL+G+LF S++ + + +++ ++++ Sbjct: 117 WYELEAEGYEARAILHEMDHLDGVLFT---SKITKYVTQEELDEMIR 160 >gi|291543910|emb|CBL17019.1| peptide deformylase [Ruminococcus sp. 18P13] Length = 153 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V DPIL + R +E+ + + LID+M E + G+GLAA Q+G+L R+ V Sbjct: 1 MAIRNIVTSEDPILSKPCRTVEEFDDKLGQLIDDMFETLEKAKGLGLAAPQVGILKRVFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D +I EGCLS P+ V R +R D + + Sbjct: 61 MDVGDGRVEAV------NPVILKESGKQRDVEGCLSCPNQWGYVTRPNKCRLRAYDRHGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + L C HE DHL+G+LF Sbjct: 115 EFTMDLKELGCRCACHETDHLDGLLFT 141 >gi|145589658|ref|YP_001156255.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048064|gb|ABP34691.1| peptide deformylase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 181 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + ++ DP L +++P++ + I LID++LE MY+ +G GLAA QIGV + Sbjct: 1 MAIQSILRMGDPRLLEIAKPVDPKLISSQQIQTLIDDLLETMYAVNGAGLAAPQIGVNQQ 60 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +VV A + + INP I SD EGCLS+P RA V R I Sbjct: 61 VVVFGFDQNPRYPDAEQVPETILINPIITPLSDISMEDWEGCLSVPGLRAKVPRYTKIRY 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + D Q + A ++HE DHL G LF + Sbjct: 121 QGFDRYGQSIDRTVEDFHARVVRHECDHLIGKLFPMRVKDF 161 >gi|190891919|ref|YP_001978461.1| peptide deformylase protein [Rhizobium etli CIAT 652] gi|190697198|gb|ACE91283.1| peptide deformylase protein [Rhizobium etli CIAT 652] Length = 164 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ ++ + L D++L M + G+G+ A IGV R Sbjct: 1 MSIRPILRYPHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR--- 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + +++NP I S + ++ EG +S+P DV R I RY D + + Sbjct: 58 VMVLELDRADGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDVTRPRAIRFRYQDVDGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 163 >gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum] Length = 177 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 1/164 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ + DP L S + +I+ ++ + + M E++Y GIG+AA Q+G R V D+ Sbjct: 6 ILSYGDPRLLIKSTEVTRIDQEMSDFVRGMFELLYRVPGIGIAAPQVGCNMRFFVFDMNR 65 Query: 66 HAHRKNPMVF-INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 A + + +I+ + +EGCLS P V+R+ I ++ +D + ++ Sbjct: 66 RADPGSRTPVTMINPVISAKEGAITQEEGCLSFPGIFVPVERALRIEIKGVDMEGKDLVL 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +GL A +QHE+DHL G+L +H++R + + K+M + ++ Sbjct: 126 EGEGLFARLIQHEMDHLEGVLLSEHMTRWDKLRLQKEMRAIEKI 169 >gi|257868125|ref|ZP_05647778.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257874600|ref|ZP_05654253.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325567766|ref|ZP_08144377.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|257802239|gb|EEV31111.1| formylmethionine deformylase [Enterococcus casseliflavus EC30] gi|257808764|gb|EEV37586.1| formylmethionine deformylase [Enterococcus casseliflavus EC10] gi|325158539|gb|EGC70686.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR ++P++ I +++ L+D++ E M + DGIG+AA Q+G ++ ++ Sbjct: 1 MRYPIIITPDERLRRQAKPVKVITDELVQLLDDLYETMVAHDGIGIAAPQVGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++++ + I D EGCLSIP VKR+ ITVRY D + Sbjct: 61 EVEEDDRFEMINPEIIASSGESLDV-----EGCLSIPHTFGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LF+D L Sbjct: 116 MEVEAFGYLARAMQHEIDHLNGVLFVDKL 144 >gi|188996826|ref|YP_001931077.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931893|gb|ACD66523.1| peptide deformylase [Sulfurihydrogenibium sp. YO3AOP1] Length = 169 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 88/169 (52%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M K ++ +PD L+R S + + I+ + MY++ G +G+AA Q+ R + Sbjct: 1 MEKLEILKYPDERLKRKSIEVVDFGKEFKEFIEKLTYTMYNSPGGVGIAAPQVNNPIRTI 60 Query: 60 VIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++D H+ N + + ++ I ++ +++EGC+S+PDY +VKR +I V Sbjct: 61 IVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEIIFREGCMSVPDYTGNVKRFYYIKVEAQ 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D N +G A +QHE+DHL G +FI+ + K D+ +K+ K Sbjct: 121 DINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVYK 168 >gi|257784671|ref|YP_003179888.1| peptide deformylase [Atopobium parvulum DSM 20469] gi|257473178|gb|ACV51297.1| peptide deformylase [Atopobium parvulum DSM 20469] Length = 180 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 V++PDP L + I+ IN D+ + ++ML+VMY+TDG+GLA QIG + R+VVID+ Sbjct: 9 VLWPDPRLSQKCEEIDDINDDVRKMAEHMLKVMYATDGVGLAGPQIGYMKRMVVIDVDYP 68 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 ++NP V INP+I + VY+EGCLS P V R + + V + + A Sbjct: 69 NGQENPFVLINPEIKVADGEPRVYEEGCLSFPGITVPVTRPSHVVVHAYNLDGDLMRYEA 128 Query: 127 DGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 +G L A CLQHE+DH+NG+ DHL R ++ + Sbjct: 129 EGDLFAVCLQHEIDHINGVTMPDHLGPGARMETLREYKE 167 >gi|225377871|ref|ZP_03755092.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] gi|225210309|gb|EEG92663.1| hypothetical protein ROSEINA2194_03530 [Roseburia inulinivorans DSM 16841] Length = 166 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + DP+L ++ +P++++ LI++ML+ MY +G+GLAA Q+G+L R+VV Sbjct: 10 MALRTIRVQGDPVLEKICKPVKELTPRTKELIEDMLDTMYEANGVGLAAPQVGILKRIVV 69 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V +NP I+ S + + + CLSIP V R ++ V D N + Sbjct: 70 IDVGEG-----PVVMVNPVILETSGEQTGDEG-CLSIPGKAGQVTRPNYVKVHAFDENME 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I L+A + HE+DHL+G L+++ + Sbjct: 124 EYEIEGTELMARAMCHEIDHLDGHLYVEKVE 154 >gi|187777638|ref|ZP_02994111.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] gi|187774566|gb|EDU38368.1| hypothetical protein CLOSPO_01230 [Clostridium sporogenes ATCC 15579] Length = 150 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + IF D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRIFDDEILRKKSKVVEVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NPKII V + CLSIP+ +KR +T++ ++ Sbjct: 61 VIDM-----GQGLIKLVNPKIINKEGTQEVIEG-CLSIPNTWGKLKRPKKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268] gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268] Length = 164 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + I+++ +LI +M E MY +G+GLAA Q+G+L +L V Sbjct: 1 MAIRSIRKIGDSILEKKCKEIKEMTDKTRDLIQDMFETMYDANGVGLAAPQVGILKQLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D INPKI ++ +EGCLS+P V R I + +D N + Sbjct: 61 VDIGDGVRYVC----INPKIEAVGEEEQCGEEGCLSVPGKEGKVTRPMNIHLEALDQNME 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A G LA HE DHL G+L+ + + Sbjct: 117 PFSLDASGFLARAFCHEYDHLQGVLYTEKVE 147 >gi|296167940|ref|ZP_06850084.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896930|gb|EFG76556.1| peptide deformylase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 197 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ + +D+ LI +M + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTQPVPVGADGSLPADLAALIADMYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R + +I D EGCLS+P R+ Sbjct: 61 LRVFVYDCADDRGRTDRRRGVVVNPVLETSQIPETMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + I GL A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDADGKPVEIEGSGLFARMLQHETGHLDGFLYLDRLIGRHARSAKRAVK 175 >gi|210633316|ref|ZP_03297750.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] gi|210159178|gb|EEA90149.1| hypothetical protein COLSTE_01663 [Collinsella stercoris DSM 13279] Length = 178 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP LR+ +E+IN +++ L++ M + M+ G GLAA Q+G +L + Sbjct: 1 MEVNGIVLSPDPRLRQECAEVEEINGELIELVERMKDQMFENGGCGLAAPQVGQTIQLAI 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID +P V INP I+ SD+ EGCLSIP ++ R + V + + Sbjct: 61 IDTEYSSKKDYDPYVLINPVIVEQSDNLVPSSEGCLSIPGINCEILRPDHVVVEAYNLDG 120 Query: 120 QHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A G L CLQHE+DHL+G D L+ +R K+ + Sbjct: 121 DCIRYEAAGDLFCVCLQHEIDHLHGKTMFDRLTPQQRVHAMKQYQE 166 >gi|253681826|ref|ZP_04862623.1| peptide deformylase [Clostridium botulinum D str. 1873] gi|253561538|gb|EES90990.1| peptide deformylase [Clostridium botulinum D str. 1873] Length = 159 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR S+ I++I+ +++ LI ++ + +YS DG+GLAA QIG+L R + Sbjct: 1 MAIKNIVTVENKLLRRKSKRIDRIDDEVLELIQDLKDTLYSGDGVGLAAPQIGILKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + + CLS P Y V R + V M+ + Sbjct: 61 IDLRDGNG---PLILLNPKILKKIGKYEDGEG-CLSYPGYEGIVVRPRKVVVSGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A GL+A + HE DHL+GIL++D ++ + Sbjct: 117 NVQYEATGLMARAICHETDHLDGILYMDLAKKMYK 151 >gi|108797549|ref|YP_637746.1| peptide deformylase [Mycobacterium sp. MCS] gi|119866635|ref|YP_936587.1| peptide deformylase [Mycobacterium sp. KMS] gi|126433171|ref|YP_001068862.1| peptide deformylase [Mycobacterium sp. JLS] gi|122977465|sp|Q1BEJ4|DEF_MYCSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513055|sp|A1UAD9|DEF_MYCSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513446|sp|A3PTZ4|DEF_MYCSJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|108767968|gb|ABG06690.1| peptide deformylase [Mycobacterium sp. MCS] gi|119692724|gb|ABL89797.1| peptide deformylase [Mycobacterium sp. KMS] gi|126232971|gb|ABN96371.1| peptide deformylase [Mycobacterium sp. JLS] Length = 197 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+LR + PI + ++ +LI ++ E M + +G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLRTETTPIPVGDDGSLPAEVADLIRDLYETMDAANGVGLAANQIGVS 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R I D +EGCLS+P + R+ Sbjct: 61 QRVFVYDCPDSRGRAGRRRGVVINPVLETSDIPETMPDPDDDEEGCLSVPGEQFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + GL A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDADGSPITVEGTGLFARMLQHETGHLDGFLYLDRLIGRHARAAKRAVK 175 >gi|225569235|ref|ZP_03778260.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] gi|225162034|gb|EEG74653.1| hypothetical protein CLOHYLEM_05317 [Clostridium hylemonae DSM 15053] Length = 157 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + +L + +P++K+ LI++M + MY G+GLAA Q+GVL R+V Sbjct: 1 MATRKIRELGEEVLTKTCKPVDKLTLRTKVLINDMFDTMYEAYGVGLAAPQVGVLKRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R ++ VR +D + Q Sbjct: 61 IDVGEGPIVLINPEIIETSGE------QTGEEGCLSVPGKYGIVTRPDYVRVRALDEDMQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + GLLA HE+DHL+G ++++ Sbjct: 115 ERELEGTGLLARAFCHEIDHLDGNMYVE 142 >gi|118602931|ref|YP_904146.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567870|gb|ABL02675.1| peptide deformylase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 185 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 18/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ +PD LR ++ + I+ I LI +M E +Y+ DGIGLAA Q+ ++VVI Sbjct: 1 MILPILNYPDKRLRTKAKHVNVIDETIQTLIKDMFETIYAKDGIGLAATQVDQHLQVVVI 60 Query: 62 DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 DL+ +K+ + I D + EGCLS+PD++A+ Sbjct: 61 DLEPNSQDDYQLFLKNFQRSSHKQSQKHHPLCFINPRIKEKDGQEKHIEGCLSVPDFQAE 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 V+R+ I V ++ + + A GLLA C+QHELDHL G+LF+D+ Sbjct: 121 VQRANHIKVEALNEKGEVFTLQATGLLAICIQHELDHLKGVLFVDY 166 >gi|30249715|ref|NP_841785.1| peptide deformylase [Nitrosomonas europaea ATCC 19718] gi|39931084|sp|Q82TW4|DEF1_NITEU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|30180752|emb|CAD85666.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718] Length = 176 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ DP L + +R +++ ++ L+ +M + M + +G GLAA QIGV ++V+ Sbjct: 1 MIKPVLKMGDPCLLQPARRVDQFGTPELEALLQDMQDTMAALNGAGLAAPQIGVSLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V INP + ++ EGCLSIP R V R + + + Sbjct: 61 FGVEHSPRYPDAESVPFTVLINPVLTPLTEQMEEDWEGCLSIPGMRGLVPRYTRLRYQGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D G A +QHE DHLNGIL+ ++ L++ Sbjct: 121 DAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|300854550|ref|YP_003779534.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434665|gb|ADK14432.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 150 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 7/154 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + D ILR+ R +EK++ I+ L+ +M + +++ +G +AA Q+GVL R V Sbjct: 1 MALRNIRTLGDEILRKKCRAVEKVDDRILTLLKDMADTLHNTENGAAIAAPQVGVLRRAV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NP+II V + CLSIP+ + R A + V+ ++ Sbjct: 61 VIDMGEG-----IICLVNPEIIEEEGSQEVIEG-CLSIPNKWGKLIRPAKVKVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I +G LA CL HE++HL+GILFID ++ Sbjct: 115 EEFTITGEGDLAKCLCHEIEHLDGILFIDKVTEF 148 >gi|326383421|ref|ZP_08205108.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] gi|326197827|gb|EGD55014.1| peptide deformylase [Gordonia neofelifaecis NRRL B-59395] Length = 197 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 9/173 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I +P+L + + P+E K +++I+ L+D+M + M + +G+GLAA QIG Sbjct: 1 MAILPICIIGEPVLHQPTTPVELDADSKPSAEIVTLLDDMYDTMDAANGVGLAANQIGEG 60 Query: 56 YRLVVIDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R+ V D D V +I D EGCLS+P R+ + Sbjct: 61 LRMFVYDCPDGGVRRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEGFPTGRADWAK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 V D N I +G A LQHE HL+G L++D L K + + Sbjct: 121 VVGTDRNGDPVEIEGNGFFARMLQHETGHLDGFLYVDVLVGRNARAAKKAVKR 173 >gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3] gi|81312889|sp|Q5L6G8|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3] Length = 184 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P LRR + I +I +I L +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSPTLRRKAEAILEITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVSLFVM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P V+INP + S+D + +EGCLSIP RADV R ITV+ + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSNVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167 + + Q + +G A + HE DHLNGIL+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIVMHENDHLNGILYIDKMEEPKDYKKFKSALEKIRR 173 >gi|21244235|ref|NP_643817.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] gi|25452915|sp|Q8PGV2|DEF1_XANAC RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|21109877|gb|AAM38353.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306] Length = 171 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ D L RV+ P+ + S ++ L+ +M E M + G+GLAA QI V +L+V Sbjct: 1 MIREIIRMGDKRLLRVAPPVTNLGSAELHTLVADMFETMDAARGVGLAAPQIAVDLQLMV 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A N +I S+D EGCLSIP RA + R FI R Sbjct: 61 FGFDASERYPEAPAVPRTALANAQIEPLSEDMENGWEGCLSIPGLRAVIPRYRFIRYRGF 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+G A +QHE D+L G L+ + Sbjct: 121 APDGSPIERDAEGFHARVVQHEYDNLVGRLYPSRIENF 158 >gi|306820768|ref|ZP_07454393.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551158|gb|EFM39124.1| peptide deformylase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 166 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 10/167 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + L I DP+LR+VSR + +++ I LI++M++ M DG+GLAA Q+GVL R++V Sbjct: 1 MGIRNLRIDGDPLLRKVSREVTELSDKIRLLIEDMMDTMTENDGVGLAAPQVGVLKRVIV 60 Query: 61 IDLQ--------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+ D P+ INP II + + CLS+P+ DVKR + I V Sbjct: 61 VDVSDVDPEVLKDENAPDEPIALINPVIIEKDGEEVGQEG-CLSVPNLTGDVKRPSRIVV 119 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + + + + A A L HE+DHLNG+L+ID L R+ + Sbjct: 120 KAKNEKFEDVVFEAKHFFARVLCHEIDHLNGVLYIDKAENL-RERVE 165 >gi|291613763|ref|YP_003523920.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] gi|291583875|gb|ADE11533.1| peptide deformylase [Sideroxydans lithotrophicus ES-1] Length = 177 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 6/160 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ D L R + + + ++ L+ +M E M + DG+GLAA QIGV R+V Sbjct: 1 MATREVLRMGDVRLLRKAGEVRLFDTPELHALLKDMRETMLAMDGVGLAAPQIGVDLRVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + A V INP + SD EGCLS+P R V R + + Sbjct: 61 IFEVNQNPRYPDAETVPQTVLINPVLTPLSDVMEEGWEGCLSVPGMRGLVPRYTHLRYQG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+GIL+ + +K Sbjct: 121 RDEYGALIDRTVSGFHARVVQHECDHLDGILYPMRIRDMK 160 >gi|147669331|ref|YP_001214149.1| peptide deformylase [Dehalococcoides sp. BAV1] gi|189083069|sp|A5FRA7|DEF_DEHSB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|146270279|gb|ABQ17271.1| peptide deformylase [Dehalococcoides sp. BAV1] Length = 167 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+II V + CLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDTKEAT---VLINPEIIKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G++A L+HE +HL+GIL+IDHL Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149 >gi|321472939|gb|EFX83908.1| hypothetical protein DAPPUDRAFT_47755 [Daphnia pulex] Length = 166 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V P P+L R S PI+ I++ I +D+MLE MY++ GIGLAA+Q+G+L R++V Sbjct: 1 MAVLKIVEEPSPLLHRTSLPIKTIDATIHKALDDMLETMYASSGIGLAAIQVGLLKRMLV 60 Query: 61 IDLQD----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 IDL + P+ INP+I+ SD+ + + EGCLS+P + ++ R A I VRY D Sbjct: 61 IDLGEASESDTWAGKPLKIINPQILWTSDNQNTFNEGCLSVPQHYVEISRPAEIKVRYQD 120 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFI 147 ++ I+A GLLATCLQHE+DHLNGI + Sbjct: 121 ETGKYHEIHAAGLLATCLQHEIDHLNGITIL 151 >gi|269926311|ref|YP_003322934.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] gi|269789971|gb|ACZ42112.1| peptide deformylase [Thermobaculum terrenum ATCC BAA-798] Length = 203 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P +LR+ S P+ K +S++ L+++M+E M DG+GL+AVQ+G L Sbjct: 1 MAVRRILQMENPDDLSVLRKRSSPVTKFDSELRKLVEDMIETMREADGVGLSAVQVGDLR 60 Query: 57 RLVVIDLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 R+VV+++ V INP+I S D QEGCLS+P A+V Sbjct: 61 RVVVMEMPGKYEQDEDGNQIEVSPPKLYVMINPEITKVSHDRIPMQEGCLSLPGRYAEVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R+ ++ VRY D N + + A+ L+ C+QHE+DHL+GILF + + + + K Sbjct: 121 RAPWVEVRYKDLNGKEHKLLAEEQLLSQCIQHEVDHLDGILFTERI--VDWSTFRDERQK 178 Query: 165 LVQLR 169 + R Sbjct: 179 QKKSR 183 >gi|73748571|ref|YP_307810.1| peptide deformylase [Dehalococcoides sp. CBDB1] gi|289432597|ref|YP_003462470.1| peptide deformylase [Dehalococcoides sp. GT] gi|123773670|sp|Q3ZXA9|DEF_DEHSC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|73660287|emb|CAI82894.1| polypeptide deformylase [Dehalococcoides sp. CBDB1] gi|288946317|gb|ADC74014.1| peptide deformylase [Dehalococcoides sp. GT] Length = 167 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + P+P+LR+ ++ + I+ I LID+M+E M S DG GLAA Q+GV RLVV Sbjct: 1 MAIRRICELPEPVLRKKAKKVPSIDGSIQTLIDDMIETMNSADGAGLAAPQVGVSLRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D V INP+I+ V + CLSIP Y ++ R+ +T + +D + + Sbjct: 61 FREPDTKEAT---VLINPEIVKKEGQRQVTEG-CLSIPGYFGELTRAETVTAKGLDRHGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I G++A L+HE +HL+GIL+IDHL Sbjct: 117 ACRIKGTGIVAQLLEHETEHLDGILYIDHLESE 149 >gi|293189708|ref|ZP_06608424.1| peptide deformylase [Actinomyces odontolyticus F0309] gi|292821298|gb|EFF80241.1| peptide deformylase [Actinomyces odontolyticus F0309] Length = 212 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 32/182 (17%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+ I +P+L R + PI+ +S++ +L+ +M+E M++ G+GLAA Q+GV ++ V Sbjct: 1 MSILPICITGEPVLHRAAAPIDSFDSELRDLVADMIETMHAAPGVGLAAPQVGVGSQVFV 60 Query: 61 IDLQ---------------DHAHRKNPMVFINPKIITFSDDFSVYQ-------------- 91 D + ++ ++ + D Sbjct: 61 WRYGGAGSFDTQYRDVLQLDEGPARGFNTVLHGVVVNPTLDLVWDTEGAGAILPEEPDIA 120 Query: 92 ---EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 EGCLS+P Y ++R+ +R D + + A G LA QHE DHL G L++D Sbjct: 121 LESEGCLSVPGYGYPLRRALGAILRGYDVDGNAIEVRARGWLARIFQHEYDHLQGTLYVD 180 Query: 149 HL 150 L Sbjct: 181 RL 182 >gi|89900986|ref|YP_523457.1| peptide deformylase [Rhodoferax ferrireducens T118] gi|89345723|gb|ABD69926.1| Peptide deformylase [Rhodoferax ferrireducens T118] Length = 186 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 14/169 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R++ P+ + ++ LI +ML+ M + DG GLAA QIGV +LV Sbjct: 1 MAIREILKMGDPRLLRIAPPVTLFDTDELHLLISDMLDTMLAADGAGLAAPQIGVDLQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKII-------------TFSDDFSVYQEGCLSIPDYRADVKR 106 + R + ++ + EGCLS+P RA V R Sbjct: 61 IFGSNARNPRYPQAPVVPQTVLLNPVITPLPPSENDATPLQVEDWEGCLSVPGLRAMVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A I D +G A +QHE DHL G L+ + R Sbjct: 121 FARIRYTGFDQYGDPINRTVEGFHARVVQHECDHLIGKLYPMRVRDFSR 169 >gi|104782988|ref|YP_609486.1| peptide deformylase [Pseudomonas entomophila L48] gi|95111975|emb|CAK16702.1| peptide deformylase 2 [Pseudomonas entomophila L48] Length = 178 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++++ LID+M E M G+GLAA QIG+ +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPEHMLGSAELRQLIDDMFETMAHVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S + EGCLS+P R V R I+ Sbjct: 61 VIFGFERSERYPDAEAVPRTILLNPVITPMSTEVEDGWEGCLSVPGLRGVVPRYKHISYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D + +ADG A +QHE DHL G L+ + + Sbjct: 121 GVDPDGNPIDRFADGFHARVVQHECDHLIGRLYPSRIQDFSK 162 >gi|153941088|ref|YP_001391920.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|170756373|ref|YP_001782237.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|152936984|gb|ABS42482.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|169121585|gb|ACA45421.1| peptide deformylase [Clostridium botulinum B1 str. Okra] gi|295319940|gb|ADG00318.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 178 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|291530592|emb|CBK96177.1| peptide deformylase [Eubacterium siraeum 70/3] gi|291557816|emb|CBL34933.1| peptide deformylase [Eubacterium siraeum V10Sc8a] Length = 160 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + + +IT EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDEHGK----IELINPVITSMKGKQHELEGCLSVPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA L HE+DHL+GILF D L ++ K Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160 >gi|320108553|ref|YP_004184143.1| peptide deformylase [Terriglobus saanensis SP1PR4] gi|319927074|gb|ADV84149.1| peptide deformylase [Terriglobus saanensis SP1PR4] Length = 187 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + DP+LR+ +R + + ++ I L+ NM E M+ G+GLAA QIG +L Sbjct: 1 MLLNICTAGDPVLRKQARALSQEEILSPAIQELVKNMRETMWRAPGVGLAAPQIGESLQL 60 Query: 59 VVIDLQDHAHRKNPMVFINPK-------------IITFSDDFSVYQEGCLSIPDYRADVK 105 V++ + H+K + I EGCLSIP + A V Sbjct: 61 AVLEGRPQFHKKMNEAEVKEWQSTPYDYLAIFNPKIELLPAHVSAYEGCLSIPGFMASVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 RS + V ++ A+ Q+I A+G A LQHE+DHLNG+L+ID + Sbjct: 121 RSQSVRVTCLNEKAEPQVIEAEGWFARILQHEIDHLNGVLYIDRMES 167 >gi|317506338|ref|ZP_07964150.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] gi|316255348|gb|EFV14606.1| polypeptide deformylase [Segniliparus rugosus ATCC BAA-974] Length = 198 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 17/181 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L R + + + D++ L+++M E + ++ G+GLAA Q+GV Sbjct: 1 MTILPIRIAGDPVLHRPTELVRLTDEGAAPPDVIVLLEDMYETLKASHGVGLAATQVGVG 60 Query: 56 YRLVVIDLQDHAHRKN--------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 RL V D D K V I D +EGCLS P R R+ Sbjct: 61 LRLFVYDCPDDTSGKRVSRKGEVINPVLETSDIPEGMPDEDEDEEGCLSAPGLRYPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+ V +D Q I GL A LQHE+ HL+G L++D L +K K V+ Sbjct: 121 AWAKVTGVDRAGQPVEIEGTGLFARMLQHEVGHLDGKLYLDVLVG----RWARKAKKAVK 176 Query: 168 L 168 Sbjct: 177 Q 177 >gi|312962671|ref|ZP_07777160.1| peptide deformylase [Pseudomonas fluorescens WH6] gi|311283046|gb|EFQ61638.1| peptide deformylase [Pseudomonas fluorescens WH6] Length = 179 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFEASERYPDAPPVPQTILINPLITPLSPVLEEGYEGCLSVPGLRGAVNRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + + +ADG A +QHE DHL G L+ ++ + Sbjct: 121 GFDPKGEPIVRFADGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|260890452|ref|ZP_05901715.1| hypothetical protein GCWU000323_01622 [Leptotrichia hofstadii F0254] gi|260859694|gb|EEX74194.1| peptide deformylase [Leptotrichia hofstadii F0254] Length = 171 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 5/163 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++ P LR S ++ ++ + +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 2 KIVLYGHPTLREKSEKVDAVDDSLRETLDEMVALMRKANGVGLAANQVDIAKRFFVLEH- 60 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 INP+I+ FS++ + +EGCLSIP V R A I V+Y++ N + + Sbjct: 61 ----EGVVKKVINPEILEFSEEIADMEEGCLSIPGIYKKVNRPAKIKVKYLNENGEEVVE 116 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 D + A QHE DH+ GILF D LS + + ++ KK+ L + Sbjct: 117 ELDEMWARAFQHEFDHIEGILFTDKLSVMNKRLVAKKLDVLKK 159 >gi|221194831|ref|ZP_03567888.1| peptide deformylase [Atopobium rimae ATCC 49626] gi|221185735|gb|EEE18125.1| peptide deformylase [Atopobium rimae ATCC 49626] Length = 183 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 1/159 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++PD L I +I +I ++ ML+ MY+TDG+GLAA QIG+L R+VVID+ Sbjct: 6 EIVLWPDERLTDTCEEISEITDEIRDIAKRMLQDMYATDGVGLAAPQIGILKRMVVIDVD 65 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +KNP V INP++IT + Y EGCLS P V R + + V + + Sbjct: 66 YPDGQKNPFVLINPEVITADGEPRTYNEGCLSFPGITVPVTRPSHVVVHAQNLDGDLMQY 125 Query: 125 YADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 A+G L A CLQHE+DH+NGI DHL R + ++ Sbjct: 126 EAEGDLFAVCLQHEIDHINGITMPDHLGPTARMEVLQRY 164 >gi|257062237|ref|YP_003140125.1| peptide deformylase [Cyanothece sp. PCC 8802] gi|256592403|gb|ACV03290.1| peptide deformylase [Cyanothece sp. PCC 8802] Length = 178 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ Sbjct: 5 LTIAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILA 64 Query: 63 LQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + +P+ INP+I++ S + EGCLS+P R V R ++ V Y D Sbjct: 65 SHPNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDR 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q Q +A QHELDHLNG++F+D + Sbjct: 125 FGQFQQQKLTDFVARIFQHELDHLNGLVFLDRVE 158 >gi|167750831|ref|ZP_02422958.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] gi|167656266|gb|EDS00396.1| hypothetical protein EUBSIR_01814 [Eubacterium siraeum DSM 15702] Length = 160 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K+ + D LR+ + + + + ++D+M E M +G+GLAA QI VL R+VV Sbjct: 1 MAKRIIAKDGDESLRKRCKDVTVFDDKLWTMLDDMYETMQEANGVGLAAPQISVLRRVVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + + + +IT EGCLS+P V R A + V+ D + Sbjct: 61 IDVGDEHGK----IELINPVITSMKGKQHELEGCLSLPGMWGYVDRPAKVKVKAQDRYGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I LLA L HE+DHL+GILF D L ++ K Sbjct: 117 EFDIEGTELLAIALCHEIDHLSGILFTDKADELLTSEQLEERKK 160 >gi|254518787|ref|ZP_05130843.1| peptide deformylase [Clostridium sp. 7_2_43FAA] gi|226912536|gb|EEH97737.1| peptide deformylase [Clostridium sp. 7_2_43FAA] Length = 150 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F ILR+ S+ + ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFGGEILRKRSKEVLVVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + +NP+II V + CL+ P+ +KR A +T++ ++ Sbjct: 61 VIDM-----GQGLIKLVNPRIIKKEGIQEVIEG-CLNYPNRWGKLKRPAKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL+GILF D ++ Sbjct: 115 KKIILTGTGDLAKCFCHEIDHLDGILFTDFVT 146 >gi|229826165|ref|ZP_04452234.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] gi|229789035|gb|EEP25149.1| hypothetical protein GCWU000182_01537 [Abiotrophia defectiva ATCC 49176] Length = 175 Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 3/150 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +R I++ + I LID+MLE MY DG+GLAA Q+GVL RL V Sbjct: 1 MALRNIRIVGDEILNKRAREIKENSDKIQTLIDDMLETMYDADGVGLAAPQVGVLKRLFV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + P VFINP+I+ S + + + CLS+P V R ++ ++ ++ + Sbjct: 61 IDCSEDRNE--PFVFINPEILETSGEQTGSEG-CLSVPGKAGIVTRPEYVKMKALNREFE 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 II +GL A + HE +HL+G ++ + + Sbjct: 118 EYIIEGEGLFARAMVHENEHLDGHIYTEKV 147 >gi|162457307|ref|YP_001619674.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161167889|emb|CAN99194.1| peptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 191 Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + +P+LR+ +R + + + + ID+++E M +G G+AA Q+ V R Sbjct: 1 MTLLKIAHIGNPVLRQRAREVTEEELSSPAMQAFIDDLVETMRDANGAGIAATQVHVPVR 60 Query: 58 LVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + +++QD+ NP I + + EGCLS+P+ R V R+ I + Sbjct: 61 IFAVEVQDNPRYPYKPNIPLTVVVNPVIEPLTQETFENYEGCLSVPNLRGVVDRTTEIRL 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D + GL A QHE DH++G+LF+D + Sbjct: 121 TGLDREGRPIDRVVRGLSAGTFQHEKDHVDGVLFVDRVKD 160 >gi|153933577|ref|YP_001384865.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936131|ref|YP_001388335.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|152929621|gb|ABS35121.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932045|gb|ABS37544.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 178 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|172038579|ref|YP_001805080.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] gi|171700033|gb|ACB53014.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142] Length = 171 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 2 VKKP---LVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 + KP + +PILR+ ++ + I + + ID +L + G+G+AA Q+ YR Sbjct: 1 MIKPNLKIAQVGNPILRQQAQCVTDITDDKLQEFIDTLLTIAMDAKGVGIAAPQVSQSYR 60 Query: 58 LVVIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L ++ + P V INP++++ S + EGCLS+P R V R ITV Sbjct: 61 LFMVCSHPNPRYPDAPLMEPTVMINPRLVSHSKEMVKGWEGCLSVPRIRGLVPRYQTITV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+D Q + QHELDHLNGILFID + Sbjct: 121 EYLDRYGQLHQQELTDFIGRIFQHELDHLNGILFIDRID 159 >gi|153855354|ref|ZP_01996503.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] gi|149752174|gb|EDM62105.1| hypothetical protein DORLON_02517 [Dorea longicatena DSM 13814] Length = 157 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + F D +L + + + K+ LI++ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIREFGDEVLNKECKEVTKMTLRTKVLINDMLDTMYEAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + V + +EGCLS+P V R + V+ ++ + + Sbjct: 61 IDIGEGPIVLINPVILETSGE------QTGEEGCLSLPGKAGIVTRPNYAKVKALNEDME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 I+ +GLLA HE+DHL+G L+ Sbjct: 115 EVILEGEGLLARAFCHEIDHLDGKLYT 141 >gi|326202810|ref|ZP_08192677.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] gi|325986887|gb|EGD47716.1| peptide deformylase [Clostridium papyrosolvens DSM 2782] Length = 151 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D +LR+ RP+E++N I +L+ +M + MY T +G GLAA Q+G+L R + Sbjct: 1 MALRNIRTVEDEVLRKKCRPVEEVNDKIRDLLKDMADTMYDTGNGAGLAAPQVGILKRAI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + +NP+II V + CLSIP V R + V+ ++ Sbjct: 61 VIDMGDG-----LINLVNPEIIEQKGSQEVIEG-CLSIPGKWGKVIRPYEVRVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + +I +A CL HE+DHL+GILF D ++ Sbjct: 115 EEVVIKGKKEMAKCLCHEIDHLDGILFTDKVT 146 >gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 157 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + + + +I + EGCLS P DV R+ ++ VR + + Sbjct: 61 VDVDDRHGK----IELINPVIIEQRGEQIGPEGCLSFPGLFGDVARADYVKVRAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|220927497|ref|YP_002504406.1| peptide deformylase [Clostridium cellulolyticum H10] gi|219997825|gb|ACL74426.1| peptide deformylase [Clostridium cellulolyticum H10] Length = 151 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + D +LR+ RP++++N + L+ +M + MY+T +G GLAA Q+G+L R+V Sbjct: 1 MALRNIRTLDDEVLRKKCRPVDEVNDKVRELLKDMADTMYNTGNGAGLAAPQVGILKRIV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ D + EGCLSI V R + V+ ++ Sbjct: 61 VIDMGDGLINLVNPEIVE------QKGSQEVIEGCLSILGKWGKVIRPTEVKVKALNEKG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + II +A CL HE+DHL+GILF D ++ Sbjct: 115 EEVIITGKKDMAKCLCHEIDHLDGILFTDKVT 146 >gi|162148854|ref|YP_001603315.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209545397|ref|YP_002277626.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] gi|161787431|emb|CAP57026.1| putative peptide deformylase 2 [Gluconacetobacter diazotrophicus PAl 5] gi|209533074|gb|ACI53011.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5] Length = 176 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 55/169 (32%), Positives = 77/169 (45%), Gaps = 7/169 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + P+L R + + DI LID+M+E M G GLAA Q+ V RL Sbjct: 1 MTLLKIARMGHPVLLRRADEVADPTAPDIARLIDDMIETMEDARGAGLAAPQVHVSLRLF 60 Query: 60 VIDLQ------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V + + V INP + D+ ++ EGCLSIP R V R I Sbjct: 61 VYRVPAERSAGGDDPPRETSVLINPVLSLVDDEMALRPEGCLSIPGLRGMVPRHVRIAYS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 +D Q A G LA LQHE DHL+GIL+ ++ L + +++ Sbjct: 121 GLDRAGQAVQGVASGFLANVLQHEYDHLDGILYPMRMTDLGQMGFDEEI 169 >gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335] Length = 180 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 6/169 (3%) Query: 6 LVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ +P P LR + I + S+I + M VMY+T+G GLAA Q+G+ RL+V Sbjct: 5 VLKYPHPALRAPNAEITEEELTGPGSEISRIAKEMFLVMYATNGAGLAAPQVGINKRLMV 64 Query: 61 IDLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + R ++ +NPKI+ FS + QEGCLS P+ DV+RS +I V + Sbjct: 65 YNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKG 124 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + G A QHE DHL+G++++D LS R + ++ +LV+ Sbjct: 125 KKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEVQGRLDELVEE 173 >gi|322806950|emb|CBZ04520.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 178 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKDLKDTLYAVTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|315453778|ref|YP_004074048.1| polypeptide deformylase [Helicobacter felis ATCC 49179] gi|315132830|emb|CBY83458.1| polypeptide deformylase [Helicobacter felis ATCC 49179] Length = 173 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 94/156 (60%), Gaps = 3/156 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P LR S + ++ + +++M E M + GIGLAA+Q+GV R+++ Sbjct: 1 MAILEVLQYPHKKLRTRSSEVRVFDAQLHAFLEDMHETMLARKGIGLAAIQVGVPKRILI 60 Query: 61 ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 I+ +D + I +IT ++ +++EGCLS+P++ +++R A +T+ Y D Sbjct: 61 INLPREEDETQHPEDRLEIINPVITHTEGSILWREGCLSVPEFYEEIERHANLTLAYQDR 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + +++ A LL+ +QHE+DHLNGILF+D LS L Sbjct: 121 HGESKMLQASELLSVAIQHEMDHLNGILFVDKLSML 156 >gi|229592219|ref|YP_002874338.1| peptide deformylase [Pseudomonas fluorescens SBW25] gi|229364085|emb|CAY51686.1| peptide deformylase [Pseudomonas fluorescens SBW25] Length = 179 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPPEMFDSPELWQLIDDMFQTMEHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I EGCLS+P R V R I Sbjct: 61 VIFGFEASERYPDAPPVPQTILINPLITPLGPVLEEGYEGCLSVPGMRGAVSRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + + +ADG A +QHE DHL G L+ ++ + + Sbjct: 121 GFDPKGEPIVRFADGFHARLVQHECDHLIGRLYPSRITDFSKFGFIE 167 >gi|330807956|ref|YP_004352418.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376064|gb|AEA67414.1| peptide deformylase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 179 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIRDILKMGDERLLRIAPPVPAEMFDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I EGCLS+P R V+R I Sbjct: 61 VIFGFEHSERYPDAEAVPQTILINPLITPLGPQMEEGFEGCLSVPGLRGAVERYQDIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D + + YA G A +QHE DHL G L+ +S + Sbjct: 121 GFDPKGEPIVRYASGFHARVVQHECDHLIGRLYPSRISDFSK 162 >gi|291518517|emb|CBK73738.1| peptide deformylase [Butyrivibrio fibrisolvens 16/4] Length = 164 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFP-DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + D +L + +P++++ + LID+M + MY DG+GLAA Q+GVL R+ Sbjct: 1 MAVLEIREYGKDDVLLKTCKPVKELTPKLRTLIDDMYDTMYDADGVGLAAPQVGVLRRIC 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + P+ INP ++ S + + + CLS+P V R + V+ ++ + Sbjct: 61 VIDIGEG-----PVTLINPVVLETSGEQTGNEG-CLSVPGKTGIVTRPNYAKVKALNEDM 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ + L+A L HE+DHL+G ++ + + Sbjct: 115 EEFIVEGEELMARALLHEIDHLDGHIYTEKVE 146 >gi|119383398|ref|YP_914454.1| peptide deformylase [Paracoccus denitrificans PD1222] gi|119373165|gb|ABL68758.1| Peptide deformylase [Paracoccus denitrificans PD1222] Length = 185 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 1/147 (0%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +P++I PDP LR + P+ ++ +I L ++L MY G GLAA QIG +R+ V+ Sbjct: 28 VRPILIHPDPALRVICEPVGRLGWDEIARLAADLLATMYDAGGRGLAAPQIGEGWRIFVM 87 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D P V ++P+I + +E CLSIP V R I++R D Sbjct: 88 DHGWKEGTPLPRVVMDPQIAPLGGEVGTMEEACLSIPGRPVSVTRPVTISMRCFDLTGTL 147 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 Q++ G+ A QHE DHL+G L +D Sbjct: 148 QLLTLTGIEARIAQHETDHLDGRLILD 174 >gi|237745527|ref|ZP_04576007.1| peptide deformylase [Oxalobacter formigenes HOxBLS] gi|229376878|gb|EEO26969.1| peptide deformylase [Oxalobacter formigenes HOxBLS] Length = 174 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 8/164 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ L R S P+ + N ++ L+ +M E M + G GLAA QIGVL R+V Sbjct: 1 MTVRKILKMGHSRLLRESEPVREFNTPELDELVSDMFETMQAAQGAGLAAPQIGVLKRVV 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 + + A V INP I +D+ EGCLSIP R V R A I Sbjct: 61 IFGYDENNRYPEAPPVPETVLINPVIRPLTDEIDEGWEGCLSIPGMRGVVPRWARIHYEG 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 D + A+G A +QHE DHL+GIL+ + L DM Sbjct: 121 FDQFGKRISRDAEGFHARVVQHECDHLDGILYPMRM--LDLDMF 162 >gi|307822304|ref|ZP_07652536.1| peptide deformylase [Methylobacter tundripaludum SV96] gi|307736870|gb|EFO07715.1| peptide deformylase [Methylobacter tundripaludum SV96] Length = 178 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + +LR+ + + ++ +I +I+ M + +T G+G+AA QI L ++ Sbjct: 1 MTRVREIAQLGAKVLRQKAEAVADVHDVEIRQIIEAMQSTLATTSGVGIAAPQISKLKQI 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++I A P V INP S+ EGCLS+P RA V R I + Sbjct: 61 IIIASRPTPRYPSAPLMEPTVMINPCFEVLSEAQEKGWEGCLSVPGIRALVPRYQEIMIH 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 Y D G +A QHE+DHL G ++D + + KLV Sbjct: 121 YTDQQGGLVESKLSGFVARIFQHEVDHLEGKTYLDRVENNADIFAESEYVKLV 173 >gi|297844442|ref|XP_002890102.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] gi|297335944|gb|EFH66361.1| hypothetical protein ARALYDRAFT_334826 [Arabidopsis lyrata subsp. lyrata] Length = 270 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 83 EIVAAGDPVLHEKAREVDPEEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 142 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 143 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVNGFRAAVERY 202 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 203 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 247 >gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 133 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 78/131 (59%), Positives = 102/131 (77%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 MY GIGLAA+QIGV R++VID+ K P VFINP+I+ SD+ SVY+EGCLSIP Sbjct: 1 MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 DY A+V+R A ++V+Y+D N + Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ Sbjct: 61 DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMV 120 Query: 159 TKKMSKLVQLR 169 KK +K + + Sbjct: 121 IKKFTKAAKSK 131 >gi|119773777|ref|YP_926517.1| peptide deformylase [Shewanella amazonensis SB2B] gi|119766277|gb|ABL98847.1| Peptide deformylase [Shewanella amazonensis SB2B] Length = 174 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 5/152 (3%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 P+ I DP+L + + P+ + + L ++ M G+G+AA QIGV RL ++ Sbjct: 8 PIAITGDPVLYQKAAPVTVFDDSLERLSQTLMATMLQAKGVGIAAPQIGVSQRLFIVASR 67 Query: 62 --DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + A PMV +NP +++ S ++ +EGCLS+P R + R ++ ++ D Sbjct: 68 PNERYPDAPLMEPMVMVNPALLSGSSEWESSEEGCLSVPGKRLSIARHRWVEAKWQDLQG 127 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 DG +A QHELDHL+GI ++ ++ Sbjct: 128 NAYSGRLDGFIARIFQHELDHLDGITLLERVT 159 >gi|118443269|ref|YP_877731.1| peptide deformylase [Clostridium novyi NT] gi|118133725|gb|ABK60769.1| peptide deformylase [Clostridium novyi NT] Length = 158 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 13/170 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V + +LRR SR IEKI+ +++ LI ++ + +YS DG+GLAA QIGVL R + Sbjct: 1 MAIKNIVTADNQLLRRKSRRIEKIDDEVLELIQDLKDTLYSADGVGLAAPQIGVLKRAFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D P++ +NPKI+ + + CLS P Y V R + V M+ + Sbjct: 61 IDLRDGND---PLILLNPKILKKIGKYEDAEG-CLSYPGYEGVVIRPRKVIVAGMNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 A GL+A + HE DHL+G+L++D + KKM K+ + Sbjct: 117 MVQYVATGLMARAICHETDHLDGVLYMD---------LAKKMYKIPTEEE 157 >gi|255553123|ref|XP_002517604.1| polypeptide deformylase, putative [Ricinus communis] gi|223543236|gb|EEF44768.1| polypeptide deformylase, putative [Ricinus communis] Length = 266 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 17/169 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R Sbjct: 75 MSLPDIVKAGDPVLHEPAREVDPDEIGSERIQKIIDDMVKVMRRAPGVGLAAPQIGVPLR 134 Query: 58 LVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V++ P +NPK+ + +++ EGCLS+ +RA Sbjct: 135 IIVLEDTTEYIGYAPKEETKAQDRRPFDLLVILNPKLKKKGNRTALFFEGCLSVDGFRAV 194 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+RS + V +D + Q + A G A LQHE DHL+G L++D + Sbjct: 195 VERSLEVEVSGLDRSGQPIKVDASGWQARILQHECDHLDGTLYVDKMVP 243 >gi|319442383|ref|ZP_07991539.1| polypeptide deformylase [Corynebacterium variabile DSM 44702] Length = 215 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 80/193 (41%), Gaps = 31/193 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-------NSDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 M P+VI DP+L + P+ + +++ LI +M E + G+GLAA Q+G Sbjct: 1 MSVLPVVICGDPVLHTPTTPVTEPAADQLGEGTELSTLIADMYETLELAHGVGLAANQVG 60 Query: 54 VLYRLVVIDLQD---------------------HAHRKNPMVFINPKIITFSDDFSVYQE 92 V R+ V D D V +I D E Sbjct: 61 VGLRVFVYDCPDIDGPEGTRKTQEEVDAQGGPMRRGCVINPVLETSEIPETMPDPEDDVE 120 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 GCLS+P Y R+ + V D + + + G A CLQHE HL+G L+ID L Sbjct: 121 GCLSVPGYDYPTGRADWARVTGTDEHGEPTSVEGYGFFARCLQHETGHLDGHLYIDML-- 178 Query: 153 LKRD-MITKKMSK 164 + R+ KKM K Sbjct: 179 IGRNARAAKKMVK 191 >gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305] Length = 198 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 76/155 (49%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V++P P LR S P+++INS + +D M +MY GIGLAA Q+ + Y+L VI+L Sbjct: 2 DIVLYPHPALRYKSVPVQEINSALRKTVDEMFGLMYDAKGIGLAANQVALPYQLFVINLT 61 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 K+ + I +EGCLS P+ V RSA I V D Sbjct: 62 ADPAEKSEEMVFINPTILKRRGQETGEEGCLSFPEMFGPVDRSAEIVVEAFDLRGALFRY 121 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + A +QHE DH+ G LFIDH+ + I Sbjct: 122 ELSEMAARAVQHENDHIEGTLFIDHMKEAELAQIQ 156 >gi|315651132|ref|ZP_07904164.1| peptide deformylase [Eubacterium saburreum DSM 3986] gi|315486597|gb|EFU76947.1| peptide deformylase [Eubacterium saburreum DSM 3986] Length = 174 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++++N LI++M+E M G+GLAA QIGVL R+VV Sbjct: 9 MAIRAIRVMGDNVLNKKCKEVKEVNDRTKILIEDMIETMREAGGVGLAAPQIGVLKRIVV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ + + +I D V EGCLS+P VKR ++ + D + Sbjct: 69 IETEPDNV-----HVLINPVIIKQDGEQVGYEGCLSVPGKSGIVKRPNYVAAKAFDIDMN 123 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT-KKMSKLVQL 168 I +GLLA + HE HL+G L++D + ++I +++ K+ + Sbjct: 124 EYTIEGEGLLARAICHECAHLDGELYVDLVEG---ELIDNEELEKMQKE 169 >gi|284042341|ref|YP_003392681.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283946562|gb|ADB49306.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 190 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 88/156 (56%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + ++ DP+LR +RP+E+ + + +LI + V+ G GLAA Q+GVL R+VV + Sbjct: 22 EIRLWGDPVLRASARPVERFDDGLADLITRLRWVIDDATGAGLAAPQLGVLVRVVVYRVP 81 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D V +NP I+ S + + + EGCLS+P A V+R A + V D + + + I Sbjct: 82 DEERDGPARVLVNPAIVVRSAERTTFVEGCLSMPGIVAPVERCANVVVHACDEHGRAREI 141 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A G A+ LQHELDHL+G+L D L+ R + Sbjct: 142 AAAGDHASVLQHELDHLDGVLLPDRLTPEHRRSYVR 177 >gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH] gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH] Length = 174 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G+ + V+ Sbjct: 11 EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVVR-- 68 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + I Sbjct: 69 -ENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 127 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 128 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 171 >gi|301167996|emb|CBW27582.1| peptide deformylase [Bacteriovorax marinus SJ] Length = 179 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 9/176 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M K L +P+LR+V+ + LI ++ + M GIG+AA QIGV Y+ Sbjct: 1 MAIKDLTKMGNPVLRKVALEYPSEEIGGEKFIKLIKDLEDTMKENGGIGIAAPQIGVSYQ 60 Query: 58 LVVID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + +I + + + +NP I + EGCLS+P R V R + Sbjct: 61 VAIIQLPDNSERYPDIAKSDQYIVVNPTIEVLDQTEQGFWEGCLSVPGLRGFVHRPRKVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + +++ AQ + + +G LAT QHELDHL G L+ID + L ++ + Q Sbjct: 121 ITFLNDRAQQEELILEGFLATVFQHELDHLFGKLYIDRIKDLTLLSYEEEFRQFWQ 176 >gi|110801598|ref|YP_698920.1| polypeptide deformylase [Clostridium perfringens SM101] gi|110682099|gb|ABG85469.1| peptide deformylase [Clostridium perfringens SM101] Length = 155 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 85/153 (55%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++I S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGD---GENEYVLINPEVIGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|255525805|ref|ZP_05392735.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296186362|ref|ZP_06854766.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255510538|gb|EET86848.1| peptide deformylase [Clostridium carboxidivorans P7] gi|296049163|gb|EFG88593.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 156 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ F D IL+R SR +EK++ +++ L++++ + +Y+ GIGLAA QIGVL +++ Sbjct: 1 MAVKQILQFGDNILKRSSRRVEKVDEELLGLVEDLKDSLYNGTGIGLAAPQIGVLKKVIF 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 IDL+D + + I EGCLS P Y V R + V + Sbjct: 61 IDLRDKTEP----ILLINPKIIKKIGKEDSVEGCLSYPGYEGIVVRPKKVIVAGKSLKWE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+GLLA HE+DHL+GIL+ D ++ R Sbjct: 117 DVEYTAEGLLAKAFCHEIDHLSGILYTDKAKKIYR 151 >gi|15892597|ref|NP_360311.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|23396566|sp|Q92HU7|DEFL_RICCN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|15619763|gb|AAL03212.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] Length = 183 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + P+VFINP I FS++ + EG LS P A + RS I V+Y+D N Q + Sbjct: 70 NNKSS-PIVFINPNITYFSEEKQTFIEGSLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 A+G LAT +QHE+++LNG F+D LS+LKRD + KKM K ++L Sbjct: 129 AEGFLATVIQHEIEYLNGKTFLDSLSKLKRDTLLKKMLKHIKL 171 >gi|218249152|ref|YP_002374523.1| peptide deformylase [Cyanothece sp. PCC 8801] gi|218169630|gb|ACK68367.1| peptide deformylase [Cyanothece sp. PCC 8801] Length = 178 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + +PILR+ ++ I +I + ++ LID ++ G+G+AA Q+ RL ++ Sbjct: 5 LTIAELGNPILRQQAQEITQIRDPNLQGLIDALIAKTLEASGVGIAAPQVSHSLRLFILA 64 Query: 63 LQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + +P+ INP+I++ S + EGCLS+P R V R ++ V Y D Sbjct: 65 SHPNPRYPNAPNMDPIAMINPRILSHSQEMVKDWEGCLSVPGVRGLVPRYQWVEVEYCDR 124 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Q Q +A QHELDHLNG++F+D + Sbjct: 125 FGQFQQQKLTDFVARIFQHELDHLNGLIFLDRVK 158 >gi|239626559|ref|ZP_04669590.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516705|gb|EEQ56571.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 162 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P++++ M LI++M E MY +G GLAA Q+GVL ++V Sbjct: 1 MAVRQIRIMGDDILTKKCKPVKEMTRRTMELIEDMFETMYEANGCGLAAPQVGVLKQIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + I D EGCLS+P V R ++ V+ +D N + Sbjct: 61 IDVDDGN-----QYVLINPEIIAQDGSQTGYEGCLSLPGKSGIVTRPNYVKVKALDENME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE+ HL G ++++ Sbjct: 116 PFELEGEGLLARAICHEVAHLEGQMYVE 143 >gi|168209296|ref|ZP_02634921.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|182626083|ref|ZP_02953844.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|170712476|gb|EDT24658.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|177908604|gb|EDT71125.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 155 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIKDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGD---GENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|241608057|ref|XP_002405931.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215500709|gb|EEC10203.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 164 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D +L+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDKILQTLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + + + LS P A + RS I V+Y+D N Q + Sbjct: 70 NNKSSTIAFINPEITYFSEEKQTFIEG-SLSFPGIEASITRSKAIKVKYLDYNGNKQELA 128 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 A+G LAT +QHE+D+LNG F+D+LS+LKRD + KK Sbjct: 129 AEGFLATVIQHEIDYLNGKTFLDYLSKLKRDTLLKK 164 >gi|331269686|ref|YP_004396178.1| peptide deformylase [Clostridium botulinum BKT015925] gi|329126236|gb|AEB76181.1| peptide deformylase [Clostridium botulinum BKT015925] Length = 156 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D ILR+ + +++IN I+ LI++M E MY DG+GLAA QIGVL RLVV Sbjct: 6 MALRNIRVNEDTILRKTCKRVDEINERILTLIEDMKETMYEADGVGLAAPQIGVLKRLVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+ INP+II+ + Y+ CLS+P + V R + + ++ + Sbjct: 66 IDVGEG-----PISLINPEIISSEGSQTDYEG-CLSLPGKQGKVTRPYKVVAKALNEKGE 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ + LLA + HELDHL+G+LF+D + + K Sbjct: 120 EVEIHGEALLARAICHELDHLDGVLFMDKVVKGK 153 >gi|312129572|ref|YP_003996912.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311906118|gb|ADQ16559.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 193 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 15/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +K+P++ + IL++ IEK ++ LI +M E M + +G GLA+ QIG+ RL ++ Sbjct: 1 MKRPILAYGHSILKQKCNDIEKDYPELDKLIADMWETMENANGCGLASPQIGLPIRLFIV 60 Query: 62 D---------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 D + +FIN KII S + EGCLSIP+ VKR Sbjct: 61 DSKTTFENLDEQDQGIYFEKNDSGIKEIFINAKIIERSAELWEDDEGCLSIPELSQKVKR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y + + + Q G A +QHE DH GIL++D+L Sbjct: 121 PWTITIAYYNKDFELQRKTFSGTTARMIQHEYDHTEGILYLDYLKP 166 >gi|291536618|emb|CBL09730.1| peptide deformylase [Roseburia intestinalis M50/1] Length = 158 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 1 MALRTIRIQGDPVLTKKCREINEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + + + CLS+P V R ++ R D N + Sbjct: 61 IDIGEG-----PVVMINPVILEKSGEQTGDEG-CLSLPGKAGTVTRPNYVKARAFDENME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 115 EYEIEGTELMARAICHELDHLDGHMYTE 142 >gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110800596|ref|YP_696318.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|168207151|ref|ZP_02633156.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|168213602|ref|ZP_02639227.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169342870|ref|ZP_02863901.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|23396560|sp|Q8XJX0|DEF2_CLOPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|110675243|gb|ABG84230.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|169299127|gb|EDS81199.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170661437|gb|EDT14120.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170714896|gb|EDT27078.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 155 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V L++VS P++ +N ++ LI ++ + + + +GIGLAA QI V R+V Sbjct: 1 MAVKKIVQIGHEALKKVSEPVKDVN-EVKGLIQDLKDTLATVEGIGLAAPQIAVNKRVVY 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+ D +N V INP++ S + EGCLS + V+R + ++ ++ + Sbjct: 60 INFGD---GENEYVLINPEVTGVSKETYEDYEGCLSYVMHEGLVERPRAVRIQALNEKGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ A LLA C HE+DHL GI+++D + Sbjct: 117 LKVYEAQDLLARCFLHEIDHLEGIMYVDRAKEM 149 >gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii] Length = 185 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 3/164 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PD +LR ++ + I+ ++ N+ M+ +M G+GLAA Q+G+ + V+ Sbjct: 22 EIVFYPDDLLRVKTKAVLNIDDELRNIAFKMVNLMDINKGVGLAAPQVGLDLSIFVVR-- 79 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + SVY+EGCLSIP D+ R ITV D N + I Sbjct: 80 -ENVMSKPLVFINPLITETSFELSVYKEGCLSIPGVYYDLLRPKSITVEAYDENGKFFKI 138 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + LLA +QHE+DHL G+LFID+ R+ + K K +L Sbjct: 139 ESSSLLARVVQHEMDHLKGVLFIDYYEDKLRNKLLKPYMKGRRL 182 >gi|300691609|ref|YP_003752604.1| peptide deformylase [Ralstonia solanacearum PSI07] gi|299078669|emb|CBJ51327.1| Peptide deformylase [Ralstonia solanacearum PSI07] Length = 170 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 9 FPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---- 63 D L RV++P+++ ++ LI++M + M + G GLAA QIGV ++V+ Sbjct: 1 MGDSRLLRVAKPVQRFQTPELTALIEDMFDTMDAARGAGLAAPQIGVDLQVVIFGFDRSE 60 Query: 64 -QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A V INP I SD+ EGCLS+P R V R + D + Q Sbjct: 61 RYPDAPAVPKTVLINPTIEPLSDEMEDGWEGCLSVPGLRGVVPRYTRLRYTGYDQHGQAI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A+G A +QHE DHL GIL+ + R Sbjct: 121 DRIAEGFHARVVQHECDHLQGILYPMRVRDFTR 153 >gi|304316976|ref|YP_003852121.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778478|gb|ADL69037.1| peptide deformylase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 159 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 6/161 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ +EKI+ I+ ++D+M E MYS DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIRKIGDPILYKKAKHVEKIDDHILMILDDMAETMYSADGVGLAANQIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + I + + QEGCLS+P+ A+VKR I V+Y D N Sbjct: 61 VDVGDGLIE------LINPEIILEEGEQIGQEGCLSVPNVTAEVKRPKKIKVKYQDRNGD 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + I + LA L HE+DHLNG+LF+D R+ + KK Sbjct: 115 IREIEGEDFLARALSHEIDHLNGVLFVDKAIRIINEDDEKK 155 >gi|86609579|ref|YP_478341.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558121|gb|ABD03078.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 174 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + L DPIL +V+ P+ + + +LI+ ML + G+GLAA Q+G L +++ Sbjct: 1 MTFR-LRQLGDPILTQVAEPVTEFKTPALQDLIEGMLATLKEAQGVGLAAPQVGSLLQVL 59 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ A + P+V +NP+++ S + + EGCLS+P+ R V R+ + V Y Sbjct: 60 IVASRPNPRYPEAPQMQPLVMVNPRLLACSSEQVLGWEGCLSVPNCRGLVARAREVEVEY 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q + A QHE DHL G +F+ Sbjct: 120 YTPEGVQQRVVWQDFPARIFQHEYDHLMGRVFLQR 154 >gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum With Ten Subunits Per Asymmetric Unit Reveal Critical Characteristics Of The Active Site For Drug Design Length = 183 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 1/163 (0%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +PDPILRR S + + ++ ++ ++ Y + GIGL+A Q+ + R++V + Sbjct: 4 KIVKYPDPILRRRSE-VTNFDDNLKRVVRKXFDIXYESKGIGLSAPQVNISKRIIVWNAL 62 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ I + V+R + +++ Y D N + Sbjct: 63 YEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFGIEGKVERPSIVSISYYDINGYKHLK 122 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ + QHE DHLNG LFID +++ + + K+++L++ Sbjct: 123 ILKGIHSRIFQHEFDHLNGTLFIDKXTQVDKKKVRPKLNELIR 165 >gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540 [Aureococcus anophagefferens] Length = 181 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 3/166 (1%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 + +P P+LR I + D M+ +MY DG+GLAA Q+G+ R V + Sbjct: 13 LTITEYPMPVLRGPCADIVDFDDDFKQTCKEMMSIMYQADGVGLAATQVGLWKRFFVYNP 72 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCL---SIPDYRADVKRSAFITVRYMDCNAQ 120 K + IT + + +E + ++RS I V Y+D + Sbjct: 73 TGDRLMKPYERIVVNPRITKYGEATADEEEGCLSSRSENCAGVIRRSLDIWVEYVDERNK 132 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 + G A QHE DH+ G+L ID LS R + ++ ++V Sbjct: 133 KRTKKLSGFEARVFQHEYDHIEGVLHIDRLSPEDRAKVEPELERMV 178 >gi|225018470|ref|ZP_03707662.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] gi|224948779|gb|EEG29988.1| hypothetical protein CLOSTMETH_02417 [Clostridium methylpentosum DSM 5476] Length = 150 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + L DPILR+ R +E+++ I L+D++ + MY+ +G GLA Q+G+L RLV Sbjct: 1 MAIRNLRFTDDPILRKRCREVEQVDDKIRTLLDDLADTMYNTENGGGLATCQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLS P+ V R +TV +D N Sbjct: 61 VIDVGTGLLKLVNPKIIETSGL------QERLEGCLSFPNQWGKVLRPQKVTVEALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + II + LA CL HE+DHL+G++F+D + Sbjct: 115 EEIIITGEDQLAQCLCHEIDHLDGVVFVDKV 145 >gi|217967822|ref|YP_002353328.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] gi|254767580|sp|B8E0X7|DEF_DICTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217336921|gb|ACK42714.1| peptide deformylase [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 6/148 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + DPIL+ ++ +EKI+ + NL+ +M+E M ++G+GLAA Q+G R++V+ Sbjct: 1 MIMEIRKIGDPILKIKAKKVEKIDEKVKNLVRDMIETMKFSNGVGLAAPQVGESLRIIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D +++ + EGCLS+P +KR+ I + D + Sbjct: 61 DYEENPIAFINPEILEMDGEVLDY------EGCLSVPGVEVPIKRAERIIFKAQDLQGRT 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDH 149 + A GLLA +QHE+DHL GIL +D Sbjct: 115 KRYKAKGLLARVIQHEVDHLEGILILDR 142 >gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551] Length = 157 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+ +L + ++ ++ + L++ M ++M DG+GLAA Q+GVL ++ V Sbjct: 1 MAKLKLVYHPNEVLEQECEVVKNFDNKLAKLLNGMYDLMLEADGVGLAAPQVGVLQQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + + + +I + EGCLS P DV R+ ++ V + + Sbjct: 61 VDVDDRHGK----IELINPVIIEQRGEQIGPEGCLSFPGLFGDVARADYVKVHAQNRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A G LA +QHE+DHL+G+LF + +++ Sbjct: 117 PYFIEAKGFLARAIQHEIDHLHGVLFTEKVTK 148 >gi|218680973|ref|ZP_03528870.1| peptide deformylase [Rhizobium etli CIAT 894] Length = 164 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P P L+ V P+ + L D++L M + G+G+ A IGVL R+ V Sbjct: 1 MPIRPILHYPHPALKTVCAPVSDFGPSLAELADDLLATMRAAPGVGITAAHIGVLSRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +++NP+I FS + + EG +S+P +V R I RY D Sbjct: 61 LELDKAFGVR---LYVNPEITWFSKETMNHAEGSVSMPGATDEVIRPRAIRFRYQDGAGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G A C+QHE+D L+GI ++ LSRL+RD + KK K Sbjct: 118 VHEEAAEGFHAICIQHEVDQLDGIFWLQRLSRLRRDRLVKKWEKAQN 164 >gi|225442881|ref|XP_002281834.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297743418|emb|CBI36285.3| unnamed protein product [Vitis vinifera] Length = 277 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L ++ +E + I +ID+M++ M + G+GLAA QIG+ R++V+ Sbjct: 90 EIVKAGDPVLHESAQEVEPGEIGSDRIQKIIDDMIKAMRTAPGVGLAAPQIGIPLRIIVL 149 Query: 62 DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + + +NPK+ + + + EGCLS+ +RA V+R Sbjct: 150 EDTKEYISYDRKDVIKAQERRPFDLLVILNPKLRKKGNRTAFFFEGCLSVDGFRAVVERH 209 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + N + + A G A LQHE DHL+G L++D + Sbjct: 210 LQVEVTGLSRNGKPIKVDASGWKARILQHECDHLDGTLYVDKMVP 254 >gi|323705507|ref|ZP_08117082.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535409|gb|EGB25185.1| peptide deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 158 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ ++KI+ ++ ++D+M E MY+ DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIRKIGDPILYKKAKYVDKIDDHVIMILDDMAETMYNADGVGLAANQIGILRRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + I + + +EGCLS+P+ +VKR + VRY D + Sbjct: 61 VDVGDGLIE------LINPEIILEEGEQIGKEGCLSVPNVTGEVKRPKKVRVRYQDRTGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ + + LA L HE+DHLNGILF++ R+ Sbjct: 115 YKELEGEDFLARALSHEIDHLNGILFVNKAIRI 147 >gi|288817783|ref|YP_003432130.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|288787182|dbj|BAI68929.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] gi|308751381|gb|ADO44864.1| peptide deformylase [Hydrogenobacter thermophilus TK-6] Length = 168 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 6/169 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M + ++ +PD L+ S+ + +++++ M S+ +G+AA Q+ V R++ Sbjct: 1 MRRLEILKYPDERLKIPSKEVSDFGKFFSEFLESLVFTMRSSPGCVGIAAPQVNVHKRVI 60 Query: 60 V----IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V I + ++ + II + V +EGCLS+PDY +VKR +I V + Sbjct: 61 VVDTSISKHKENKLSHGLLVLVNPIILQREGEIVIREGCLSVPDYTGNVKRHYWIKVSAL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D +G A +QHE+DHL+G +F++ L K ++ +K+ + Sbjct: 121 DVKGNPVEFETEGFEAVVIQHEIDHLDGKVFLERLVSPK-ELFKRKVYR 168 >gi|226950032|ref|YP_002805123.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226843262|gb|ACO85928.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 178 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDGITGIIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + + +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIILINPKFSKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|94986391|ref|YP_605755.1| peptide deformylase [Deinococcus geothermalis DSM 11300] gi|94556672|gb|ABF46586.1| Peptide deformylase [Deinococcus geothermalis DSM 11300] Length = 216 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 28/196 (14%) Query: 1 MV----KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGL 47 M P+ ++ DP+LRR +RP++ + + + + MLE M+ G+GL Sbjct: 1 MAEAPRVYPIRLYGDPVLRRKARPLQATDTLTVPGFGPQSVREVANTMLETMFEARGVGL 60 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQE 92 AA Q+G+ R+ V + + + K I D S + Sbjct: 61 AAPQVGLPVRMFVAVEYEDDEEEQEGRDVPLKSRVLREFVMLNPVLTVIDKKKDRSYQEG 120 Query: 93 GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y V R+ + VRY D + Q + + AD LA QHE DHL+G+ F+D L Sbjct: 121 CLSIPGIYEEGVARARAVQVRYTDLDGQERTLEADDYLARVFQHETDHLDGVFFLDRLPP 180 Query: 153 LKRDMITKKMSKLVQL 168 + K+++ + + Sbjct: 181 EVTEDHRKELAAMQRQ 196 >gi|325680310|ref|ZP_08159870.1| peptide deformylase [Ruminococcus albus 8] gi|324108019|gb|EGC02275.1| peptide deformylase [Ruminococcus albus 8] Length = 155 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L + +P+EK + + +D+M E + +G+GLAA Q+ +L R + Sbjct: 1 MAVRKILNKSDETLHKKCKPVEKFDEKLWTWLDDMRETLAQANGVGLAAPQVAILRRFCI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP+I S++ EGCLS P+ V R + + D N + Sbjct: 61 IDVGDGKVYE----LINPEITWKSEETQYVLEGCLSCPNEWGYVTRPKSVKFKAQDRNGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + L A + HE HL+G LF + Sbjct: 117 WYEMEVSDLFAQAVCHETAHLDGHLFTE 144 >gi|172041401|ref|YP_001801115.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] gi|171852705|emb|CAQ05681.1| polypeptide deformylase [Corynebacterium urealyticum DSM 7109] Length = 267 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 29/179 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN--------SDIMNLIDNMLEVMYSTDGIGLAAVQI 52 M P+VI DP+L + + + + + I +M E M G+GLA Q+ Sbjct: 45 MTVLPIVIAGDPVLHNPTNKVGEPDLDANGVPTEEFKKFIADMHETMDRAHGVGLAGNQV 104 Query: 53 GVLYRLVVIDLQDHAHRKNPMV---------------------FINPKIITFSDDFSVYQ 91 GV RL V D +I D + Sbjct: 105 GVAKRLFVYHCPDIDGPNGEQRTEEEIAAQGGPMRRGTVINPVLETSEIPETMPDEYEDE 164 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 EGCLS+P Y R+ + V +D N + + G A CLQHE+ HL+G L+ D L Sbjct: 165 EGCLSVPGYSFPTGRADWARVTGIDENGEPVTVEGYGFFARCLQHEVGHLDGFLYTDTL 223 >gi|170761101|ref|YP_001787941.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408090|gb|ACA56501.1| peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 178 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I N+ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKTLKRVSKKVECIDDEITGIIKNLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + P++ INPK + +EGCLS P Y V R + + ++ + Sbjct: 83 I---DLRNGQEPIILINPKFLKKIGK-EESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKNAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|187778789|ref|ZP_02995262.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] gi|187772414|gb|EDU36216.1| hypothetical protein CLOSPO_02384 [Clostridium sporogenes ATCC 15579] Length = 178 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L+RVS+ +E I+ +I +I+++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAVREILQVGDKTLKRVSKKVECIDDEIKGIIEDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D +R+ P++ INPK + + CLS P Y V R + + ++ + Sbjct: 83 I---DLRNRQEPIILINPKFLKRIGKEESQEG-CLSYPGYEGIVIRPRRVVIIGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|218661137|ref|ZP_03517067.1| peptide deformylase [Rhizobium etli IE4771] Length = 184 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ V P+ + + L D++L M + G+G+ A IGV R+ V Sbjct: 21 MPVRPILRYPHQGLKTVCAPVTAFDDSLAALADDLLATMRAAPGVGITAAHIGVSLRVTV 80 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + ++NP+I S + ++ EG +S+P +V R I RY D + + Sbjct: 81 LELDKTDGVRL---YVNPEITWQSQETMIHTEGSVSMPGATDEVTRPRAIRFRYQDADGK 137 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 A+ LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 138 MHDEAAEDFLAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEK 181 >gi|307692359|ref|ZP_07634596.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 167 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 5/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ + L +V P+ K + + +LID+M E + G+GLAA Q+G+L R+V+ Sbjct: 1 MAIREILTRGESALTKVCHPVTKFDQKLWDLIDDMKETLAEAGGVGLAAPQVGILRRVVI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + I EGCLS+P VKR ++ V+ D + Sbjct: 61 VINEADEVLELVNPE-----IVAQQGEQDGLEGCLSVPGLWGFVKRPEWVKVKAQDRFGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 GL A C HEL HL+G L+ + +L Sbjct: 116 EYEAEGTGLTARCFCHELAHLDGHLYTELTDKL 148 >gi|169333675|ref|ZP_02860868.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] gi|169259669|gb|EDS73635.1| hypothetical protein ANASTE_00059 [Anaerofustis stercorihominis DSM 17244] Length = 174 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 12/172 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D ILR+ S+ ++KI + LID+M E MY G+GLAAVQ+GVL R+V Sbjct: 1 MALRTIRITGDEILRKTSKEVKKITPRTLELIDDMFETMYDAQGVGLAAVQVGVLRRIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D P+V INP+II S++ + EGCLS+P + R + V+ +D + Sbjct: 61 IDVGDG-----PVVLINPEIIYKSEEEYLEAEGCLSVPGEQGYTYRPEEVRVKALDRDGN 115 Query: 121 HQIIY-ADGLLATCLQHELDHLNGILFIDH-LSRLKRDMITKKMSKLVQLRD 170 +II D + + HEL+HL+GIL+ D ++ K +++ ++++ R+ Sbjct: 116 ERIIESKDRFFSKAICHELEHLDGILYTDKTVTPTK-----EQIDEIIKQRE 162 >gi|119946929|ref|YP_944609.1| peptide deformylase [Psychromonas ingrahamii 37] gi|119865533|gb|ABM05010.1| peptide deformylase [Psychromonas ingrahamii 37] Length = 182 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 5 PLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID- 62 P+ P+LR+ + +E + + LI+ M+ + G+G+AA QI R+ ++ Sbjct: 10 PIAQLGHPVLRQRATEVENVLADECQQLINQMMFAVSEAGGVGIAAPQIHHSVRMFIMCS 69 Query: 63 ----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 A P INP+I+ +S D EGCLS+P R V R + ITVRY+D Sbjct: 70 KPNARYPDAPLMAPTAIINPEILHYSSDKVKGWEGCLSVPSMRGLVPRHSQITVRYVDQQ 129 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q G +A QHELDHLNG+ FID L Sbjct: 130 GNKQQQELTGFIARIFQHELDHLNGLTFIDQLES 163 >gi|282895330|ref|ZP_06303532.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] gi|281199636|gb|EFA74496.1| def2 (Formylmethionine deformylase) [Raphidiopsis brookii D9] Length = 178 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K ++ + +L++ + IE IN +I LID+++ + ++G+G+AA Q+ RL Sbjct: 1 MTGKSSIIQLGNLLLQQKATEIEAINDREIQQLIDHLITTVAQSNGVGIAAPQVAQSLRL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + + + P INPKI+ + + + EGCLS+P R V R I V Sbjct: 61 FIVASRPNPRYPHAPEMEPTPMINPKIVGYGTEITKGWEGCLSVPGIRGLVPRYERIQVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 Y D N Q +A QHE DHL G++F+D + + + + KL+ R Sbjct: 121 YTDRNGNFQKQELVNFVARIFQHEYDHLEGLVFLDRVESPQDLISEAEYQKLMNQR 176 >gi|126649676|ref|ZP_01721912.1| peptide deformylase [Bacillus sp. B14905] gi|126593395|gb|EAZ87340.1| peptide deformylase [Bacillus sp. B14905] Length = 176 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + +NP +I + CLS P +V+R +++ + D + Sbjct: 73 VELGEERDIL---EMVNPTVIETDGAEIDIEG-CLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + A G A + HE+DHL+G+LF S++KR + +++ ++ + Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKRVITAEELEEMYANEE 175 >gi|113478377|ref|YP_724438.1| peptide deformylase [Trichodesmium erythraeum IMS101] gi|110169425|gb|ABG53965.1| peptide deformylase [Trichodesmium erythraeum IMS101] Length = 177 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + + ILR ++ + I + ++ LIDN++ + T+G+G+AA Q+ + L Sbjct: 1 MEVLQVAQLGNKILRYQAQTVNNILDQNVQQLIDNLIFTVIETNGVGIAAPQVSISDCLF 60 Query: 60 VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +I +A + P+ INP++I+ S+D EGCLSIP R V R I V Y Sbjct: 61 IIASRPNIRYPNAPKMEPIAMINPRLISHSEDRVKGWEGCLSIPGIRGLVPRYRVINVEY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170 + + + +A QHE DHL G++F+D + + + K ++QLR+ Sbjct: 121 TNREGKLERQELTDFVARIFQHEYDHLEGLVFLDRVESTTDLITEDEYQKQIIQLRN 177 >gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 159 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + R +EK+ I LID+M + MY G+GLAA Q+G+L ++VV Sbjct: 1 MALRQIRTQGDDILTKECRKVEKMTPKIRELIDDMFDTMYEAYGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID + + I + +EGCLS+P V R ++ VR D + Q Sbjct: 61 IDTTGEDP-----IVLINPEIIETSGSQTGEEGCLSVPGMSGVVTRPNYVKVRAFDEDMQ 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I+ + LLA + HE DHL+G L+ + Sbjct: 116 EFILEGEELLARAICHETDHLHGRLYTE 143 >gi|229541139|ref|ZP_04430199.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325559|gb|EEN91234.1| peptide deformylase [Bacillus coagulans 36D1] Length = 161 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M+ +V +P IL + + S + ++D M E M DG+GLAA Q+G+ ++ V Sbjct: 1 MM--EIVKYPAAILEEKCKRVTAFGSSLKAVLDEMYETMLEADGVGLAAPQVGINQQIAV 58 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID D R + + I EGCLS P V R+ ++ V+ D N + Sbjct: 59 IDTGDGTGRID----LINPKIVTRRGEQTDVEGCLSFPGVYGTVSRAHYVKVKAQDANGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 I A+ LA LQHE+DHL+G+LF + Sbjct: 115 AFTIEAEDFLARALQHEIDHLHGVLFTSKI 144 >gi|297564644|ref|YP_003683616.1| peptide deformylase [Meiothermus silvanus DSM 9946] gi|296849093|gb|ADH62108.1| peptide deformylase [Meiothermus silvanus DSM 9946] Length = 195 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 14/173 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ ++ DP+LR+ + ++ S+I L +NM E M+ G+GLAA Q+G RL V Sbjct: 1 MIYPIRLYGDPVLRKRASSVKDF-SEIPRLAENMFETMFEARGVGLAAPQVGRSERLFVF 59 Query: 62 DLQD-------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 KN V +NP I + + Y +V R Sbjct: 60 AEYVDAEDEEEGEEADLKTRVKNQWVMVNPAITYRAGQQISTEGCLSIPGLYSDEVPRDL 119 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 I V Y + + + +G LA +QHELDHL+G LF + L + + ++ Sbjct: 120 QIRVEYQNELGEKKTQEFEGYLAVVVQHELDHLDGTLFFERLPKDLKAAFLEE 172 >gi|126662042|ref|ZP_01733041.1| peptide deformylase [Flavobacteria bacterium BAL38] gi|126625421|gb|EAZ96110.1| peptide deformylase [Flavobacteria bacterium BAL38] Length = 195 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 12/163 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + +P+LR+V I ++ I NM E MY G+GLAA Q+G+ RL ++ Sbjct: 1 MILPIYGYGEPVLRKVGEDISPEYPNLKETIVNMYETMYHAHGVGLAAPQVGLPIRLFIV 60 Query: 62 DLQDHA------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D + + + FIN KII D + EGCLSIPD R DV R Sbjct: 61 DTEPFSDSDDVSKEEAALMKDFKKTFINAKIIKEEGDVWGFNEGCLSIPDVREDVFRHDT 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+ Y D + + DGL+A +QHE DH+ GILF DH+S Sbjct: 121 ITIEYFDEDFNKKTEVYDGLIARVIQHEYDHIEGILFTDHISS 163 >gi|237798881|ref|ZP_04587342.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021735|gb|EGI01792.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 179 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L RV+ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRVAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPEAEAVPQTILLNPLITPLGPNMEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPDGLPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10] gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10] Length = 190 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 62/162 (38%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ F D +LR+ + I K D+ LI NM + M S GIGLAA Q+G+ RL ++ Sbjct: 1 MILPIRAFGDAVLRKHCQEITKDYPDLDELIANMFDTMNSAHGIGLAAPQVGLDIRLFIV 60 Query: 62 DLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 DL + V IN KI+ + + + EGCLSIPD R DVKR I Sbjct: 61 DLSPLAEDEDYADIADELKDFKKVLINAKILEETGEEWKFNEGCLSIPDIREDVKRKETI 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + Y D N + A +QHE DH+ GILF DHLS Sbjct: 121 VIEYYDENFVKHTDTFSDMRARVIQHEYDHIEGILFTDHLSS 162 >gi|160900287|ref|YP_001565869.1| peptide deformylase [Delftia acidovorans SPH-1] gi|160365871|gb|ABX37484.1| peptide deformylase [Delftia acidovorans SPH-1] Length = 179 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L RV++P+ + + ++ L+ ++L+ M++ +G GLAA QIGV ++V Sbjct: 1 MTVRTILKMGDPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A V INP I +D + EGCLS+P R V R I Sbjct: 61 VFGSGLPNPRYPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DHL G L+ + Sbjct: 121 GFDVFGDAIDRTVDGFHARVVQHECDHLWGKLYPMRMRDF 160 >gi|313905223|ref|ZP_07838591.1| peptide deformylase [Eubacterium cellulosolvens 6] gi|313469976|gb|EFR65310.1| peptide deformylase [Eubacterium cellulosolvens 6] Length = 173 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 5/150 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DP+L +V +P+ K++ + L+ +M + MY G+GLAA Q+GVL R+ V Sbjct: 1 MAIRTIRTEGDPVLEKVCKPVAKMSLRMKILVKDMFDTMYDACGVGLAAPQVGVLRRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ +P VF+NP+II S + + + CLSIP V R ++ V+ D N + Sbjct: 61 IDVDGE----HPYVFVNPEIIEMSGEQTGDEG-CLSIPGMTGTVTRPDYVKVKAFDINME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + A GLLA HE +HL+G+L+ H+ Sbjct: 116 PFELEATGLLARACCHEFEHLDGVLYTCHV 145 >gi|311068093|ref|YP_003973016.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868610|gb|ADP32085.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 160 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKPIVTHPAEVLETPAEAVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + INP+I+ + + CLS PD +V R ++ V+ + + Sbjct: 61 VDIGEESGR---IDLINPEILESGGKQTGIEG-CLSFPDLYGEVTRPDYVKVQAYNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFVFEATGFLARAVQHEMDHLDGVLFTSKVSK 148 >gi|6225247|sp|O31410|DEF2_BACST RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Peptide Deformylase Complexed With Antibiotic Actinonin gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus stearothermophilus] Length = 184 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D NPKI++ S + D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVL 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F D ++ Sbjct: 123 RYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169 >gi|331017341|gb|EGH97397.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 179 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|77460570|ref|YP_350077.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] gi|77384573|gb|ABA76086.1| peptide deformylase [Pseudomonas fluorescens Pf0-1] Length = 179 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ + ++ LID+M + M S G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFEHSERYPDAEAVPQTILINPLITPLSPLMEEGFEGCLSVPGLRGAVDRYQQIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +D + + A G A +QHE DHL G L+ ++ + Sbjct: 121 GVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRITDFSK 162 >gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1] gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1] Length = 176 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 5/170 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +PD IL++ + ++ + + +D M + MY DG+GLAA QIG+ YR++V Sbjct: 1 MTYEIRTWPDKILKQKMKEVDFFSDGKLKEYVDVMFKKMYELDGVGLAANQIGIPYRIIV 60 Query: 61 ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ID ++ + +V INP+I+ + + CLS P + + R+ + V+ D Sbjct: 61 IDTTVREEEGEKGVKLVLINPQIVEKEGEIESTEG-CLSFPGVQITIPRAERVKVKAKDI 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 N I L+ LQHE+DH+NGI FI++L +K+ M+ +K K + Sbjct: 120 NGNDIEIEGKDFLSVVLQHEIDHINGIPFINYLPPVKKRMVLEKYMKSRK 169 >gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485] gi|254767576|sp|B8G5R5|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485] Length = 188 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 22/186 (11%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ D IL+ RP++ + ++ L+ +M E M++ +G+GLAA QIG+ Sbjct: 1 MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMHAANGVGLAAPQIGIPI 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ + P V INP+I+ S + + EGCLS+P + V Sbjct: 61 QLCIIEIPPEYEEQPDGSLIEVNPAEPYVLINPRIVKTSGEEIMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R ++TV + D + +H + DGLL +QHE+DHL+GILF + + L + Sbjct: 121 RQTWVTVEFQDLSGKHHRLRRADGLLGWAIQHEVDHLHGILFTERIRDL------STLRD 174 Query: 165 LVQLRD 170 + + R+ Sbjct: 175 ITKERE 180 >gi|119713702|gb|ABL97752.1| peptide deformylase [uncultured marine bacterium EB0_41B09] Length = 163 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----D 62 +PIL + + +EK + +I LI +M++ M G GLAA Q+G +LV+ + Sbjct: 1 MGNPILLKEAEKVEKFDTPEIHELIKDMIKTMKDAQGAGLAAPQVGESIQLVIFGVDKNE 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 A V INP I + + EGCLS+P R V R I + D Sbjct: 61 RYPEAEEVPFTVLINPVITPLNQEKEDDWEGCLSVPGMRGVVPRYKTINYKGFDQYGNEI 120 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +G A +QHE DHL GIL+ + +K Sbjct: 121 DRDVEGFHARVVQHECDHLFGILYPSRIEDMK 152 >gi|320327457|gb|EFW83470.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] gi|330877286|gb|EGH11435.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 179 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E ++S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETIHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|237750767|ref|ZP_04581247.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] gi|229373857|gb|EEO24248.1| polypeptide deformylase [Helicobacter bilis ATCC 43879] Length = 171 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 3/152 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +P+ ILR +S+ ++ ++ + +D+M E M +G+GLAA+Q+ R+++I Sbjct: 1 MVLEVIHYPNKILRTISKEVQVFDNALHEFLDSMYETMMEHNGVGLAAIQVAKPLRVLII 60 Query: 62 DLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ I +I ++ ++ EGCLS+P + +V R + I V+Y D Sbjct: 61 NIPREEDNTQYKEDLLEIINPVILHAEGEILWNEGCLSVPGFYEEVSRFSQIKVKYQDRF 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +A LQHE+DHLNGILF+D L Sbjct: 121 GVTHENIFNDFMAVALQHEMDHLNGILFVDKL 152 >gi|226949660|ref|YP_002804751.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226844106|gb|ACO86772.1| peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|322806631|emb|CBZ04200.1| peptide deformylase [Clostridium botulinum H04402 065] Length = 150 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|17433051|sp|Q9FV53|DEF1A_ARATH RecName: Full=Peptide deformylase 1A, chloroplastic; Short=AtDEF1; Short=AtPDF1A; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403 Polypeptide Deformylase from Chlamydia pneumoniae genome gb|AE001687 [Arabidopsis thaliana] gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis thaliana] gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana] Length = 259 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 72 EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 131 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 132 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 191 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 192 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 236 >gi|168180757|ref|ZP_02615421.1| peptide deformylase [Clostridium botulinum NCTC 2916] gi|182668503|gb|EDT80482.1| peptide deformylase [Clostridium botulinum NCTC 2916] Length = 150 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMTDTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCL+IP+ + R A +TV+ ++ N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLNIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|312111833|ref|YP_003990149.1| peptide deformylase [Geobacillus sp. Y4.1MC1] gi|311216934|gb|ADP75538.1| peptide deformylase [Geobacillus sp. Y4.1MC1] Length = 185 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 18/170 (10%) Query: 1 MVK--KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ K ++ P LR+V+ P+ + + ++ ++L+ + + GI Sbjct: 1 MMITMKNIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGI 60 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRA 102 GLAA QI V R++ + + D NPKI++ S + + Sbjct: 61 GLAAPQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPG 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A ITV + + + GL A QHE+DHLNGI+F DH+ Sbjct: 121 YVPRYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 170 >gi|148380240|ref|YP_001254781.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153933663|ref|YP_001384545.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153937608|ref|YP_001388061.1| peptide deformylase [Clostridium botulinum A str. Hall] gi|148289724|emb|CAL83829.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152929707|gb|ABS35207.1| peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152933522|gb|ABS39021.1| peptide deformylase [Clostridium botulinum A str. Hall] Length = 150 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ V R A +TV+ ++ + Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGRVIRPAKVTVQALNEDG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|138894591|ref|YP_001125044.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2] gi|196247801|ref|ZP_03146503.1| peptide deformylase [Geobacillus sp. G11MC16] gi|134266104|gb|ABO66299.1| N-formyl-methionyl-aminoacyl-tRNA deformylase [Geobacillus thermodenitrificans NG80-2] gi|196212585|gb|EDY07342.1| peptide deformylase [Geobacillus sp. G11MC16] Length = 184 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLA 48 K ++ P LR+V+ P+ S+ + +L+D M GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVPLPASEEDKRILQSLLDYLKMSQDPEMAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D NPKI++ S + D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F DH++ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHINP 169 >gi|71737618|ref|YP_273728.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558171|gb|AAZ37382.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325402|gb|EFW81467.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076] Length = 179 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|229815473|ref|ZP_04445805.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] gi|229809006|gb|EEP44776.1| hypothetical protein COLINT_02521 [Collinsella intestinalis DSM 13280] Length = 178 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PDP LR+ +E+INSD+ L++ M M+ G GLAA Q+G +L + Sbjct: 1 MEINGIVLSPDPRLRQECAEVEEINSDLRALVERMKVQMFENGGCGLAAPQVGETIQLAI 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +D +P V INP I+ SD+ Y EGCLSIP +++R + V + Sbjct: 61 VDTEYTSEKDYDPYVLINPVIVEQSDNLVPYNEGCLSIPGINCEIRRPDHVVVEAYNLEG 120 Query: 120 QHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A G L CLQHE+DHL+G + L +R ++ Sbjct: 121 ECIRYEAAGDLFCVCLQHEIDHLHGKTMFERLLPQQRMHAMRQYQ 165 >gi|268680776|ref|YP_003305207.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] gi|268618807|gb|ACZ13172.1| peptide deformylase [Sulfurospirillum deleyianum DSM 6946] Length = 171 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 2/154 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++++P+ ILR SR + ++ + L+D+M E M + +GIGLAA+QIGV ++I Sbjct: 1 MIREILVYPNKILRETSRDVIHFDATLHELLDDMYETMITKEGIGLAAIQIGVAQNALII 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L D + +I D +VYQEGCLS+P Y +V R+ I +R+ D Sbjct: 61 NLVDETGLQKKENLYEIINPVILEKDGSTVYQEGCLSVPGYYDEVTRAEHIKLRFYDRMG 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 L+A +QHE+DHL G LFI+ LS L Sbjct: 121 VMHEEEFRDLMAIAVQHEMDHLKGHLFIEKLSYL 154 >gi|317056476|ref|YP_004104943.1| peptide deformylase [Ruminococcus albus 7] gi|315448745|gb|ADU22309.1| peptide deformylase [Ruminococcus albus 7] Length = 155 Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 4/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L +V RP+EK + + +D+M E + +G+GLAA Q+ +L R + Sbjct: 1 MAVRNILNKSDETLHKVCRPVEKFDEKLWTWLDDMKETLAQANGVGLAAPQVAILRRFCI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + INP+I S++ EGCLS P V R + + D N + Sbjct: 61 IDVGDGNVYE----LINPEITWKSEETQRVLEGCLSCPGQWGYVTRPMSVKFKAQDRNGE 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + L A + HE HL+G LF + Sbjct: 117 WYEMEVSELFAQAVCHETAHLDGHLFTE 144 >gi|257414230|ref|ZP_04745678.2| peptide deformylase [Roseburia intestinalis L1-82] gi|257200762|gb|EEU99046.1| peptide deformylase [Roseburia intestinalis L1-82] gi|291541040|emb|CBL14151.1| peptide deformylase [Roseburia intestinalis XB6B4] Length = 163 Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I DP+L + R I ++ I LID+ML+ MY +G+GLA Q+GVL R+VV Sbjct: 6 MALRTIRIQGDPVLTKKCREITEMTPKIKELIDDMLDTMYEANGVGLAGPQVGVLKRIVV 65 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP I+ S + + + CLS+P V R ++ D N + Sbjct: 66 IDIGEG-----PVVMINPVILEKSGEQTGDEG-CLSLPGKAGTVTRPNYVKAHAFDENME 119 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I L+A + HELDHL+G ++ + Sbjct: 120 EYEIEGTELMARAICHELDHLDGHMYTE 147 >gi|331004325|ref|ZP_08327800.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] gi|330411391|gb|EGG90806.1| polypeptide deformylase [Lachnospiraceae oral taxon 107 str. F0167] Length = 169 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 5/148 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + + ++ +N LI++M++ M +G+GLAA QIGVL R+VV Sbjct: 1 MAIRAIRVIGDSVLNKKCKEVKAVNDRTKVLIEDMIDTMREANGVGLAAPQIGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I+++ + +I EGCLS+P VKR + V+ D + Sbjct: 61 IEIEPENV-----YVLINPVILEQYGEQEGYEGCLSVPGKSGIVKRPNHVKVKAFDIDMN 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA + HE HL G L++D Sbjct: 116 EYTLEGEGLLARAICHECAHLEGELYVD 143 >gi|257871146|ref|ZP_05650799.1| formylmethionine deformylase [Enterococcus gallinarum EG2] gi|257805310|gb|EEV34132.1| formylmethionine deformylase [Enterococcus gallinarum EG2] Length = 163 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LRR +P+ I +++ L+++M E M + DG+G+AA QIG ++ ++ Sbjct: 1 MRYPIIIHPDDQLRRKPKPVSMITDELVQLLEDMYETMVAHDGVGIAAPQIGKNLQVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + INP+II S + + CLSIP VKR+ ITVRY D + Sbjct: 61 EVDEEDRFE----LINPEIIESSGESVDVEG-CLSIPHTYGTVKRADEITVRYFDREGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LFID + Sbjct: 116 MEVQAFGYLARAIQHEIDHLNGVLFIDKM 144 >gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213969590|ref|ZP_03397726.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] gi|301383364|ref|ZP_07231782.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13] gi|302058804|ref|ZP_07250345.1| peptide deformylase [Pseudomonas syringae pv. tomato K40] gi|302134493|ref|ZP_07260483.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|32363152|sp|Q886I1|DEF2_PSESM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str. DC3000] gi|213925686|gb|EEB59245.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1] Length = 179 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|284045178|ref|YP_003395518.1| peptide deformylase [Conexibacter woesei DSM 14684] gi|283949399|gb|ADB52143.1| peptide deformylase [Conexibacter woesei DSM 14684] Length = 167 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + F DP+L+ + + + + D+ I M E+M GIGLAA Q+G L R++V Sbjct: 1 MRYVRQFGDPVLKSRAMTVSRFDDDLREQIRGMGEIMNDAFGIGLAATQLGKLNRVLVYR 60 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ + + +NP++ D+ +EGCLS+ DV+R + VR D Sbjct: 61 VEQDSPA---IALVNPELEWSGDELETAEEGCLSLRGVLVDVERPVHVRVRAQDEQGSTV 117 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 II A GL A +QHE+DHL+G+L +D SR +R + + + Sbjct: 118 IIEASGLEARVIQHEMDHLDGVLILDRTSRDQRKQAMRALREQ 160 >gi|330967399|gb|EGH67659.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 179 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPTEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115] gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF) [Deinococcus deserti VCD115] Length = 220 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 24/189 (12%) Query: 3 KKPLVIFPDPILRRVSRP--------IEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DP+LRR +RP + + + + D MLE M+ G+GLAA Q+G Sbjct: 10 IYPIRLYGDPVLRRKARPLQHTDMLTVPGFDPQTVRQVADTMLETMFEARGVGLAAPQVG 69 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98 + R+ V + +N K + D S + Sbjct: 70 LPVRMFVAVEYEDDEEENEGQDTPLKSRVLREFVMLNPVLSVLDKKKDRSYQEGCLSIPG 129 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Y V R+ I VRY D + + I AD LA QHE DHL+GI F+D L + Sbjct: 130 IYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEADHLDGIFFLDRLPPEVTEDY 189 Query: 159 TKKMSKLVQ 167 +++ + + Sbjct: 190 RRELLAMQR 198 >gi|56419592|ref|YP_146910.1| peptide deformylase [Geobacillus kaustophilus HTA426] gi|261419255|ref|YP_003252937.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297530776|ref|YP_003672051.1| peptide deformylase [Geobacillus sp. C56-T3] gi|319766070|ref|YP_004131571.1| peptide deformylase [Geobacillus sp. Y412MC52] gi|56379434|dbj|BAD75342.1| peptide deformylase2 (PDF 2) N-formylmethionylaminoacyl-tRNA deformylase [Geobacillus kaustophilus HTA426] gi|261375712|gb|ACX78455.1| peptide deformylase [Geobacillus sp. Y412MC61] gi|297254028|gb|ADI27474.1| peptide deformylase [Geobacillus sp. C56-T3] gi|317110936|gb|ADU93428.1| peptide deformylase [Geobacillus sp. Y412MC52] Length = 184 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+++ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKIAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D NPKI++ S + D V Sbjct: 63 APQINVSKRMIAVHVTDENGTLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F D ++ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINP 169 >gi|220926453|ref|YP_002501755.1| peptide deformylase [Methylobacterium nodulans ORS 2060] gi|219951060|gb|ACL61452.1| peptide deformylase [Methylobacterium nodulans ORS 2060] Length = 165 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M L+ +PDP LR+ + P + + + ++ E + + IGL A G+ R+ V Sbjct: 1 MTILSLLRYPDPRLRQPAPPAALPDPGVSAVAADLAETLAAHGAIGLTAPHAGLPVRVTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L A ++NP+++ S + + ++EG +++P +V+R A + VR+ D + Sbjct: 61 IRLGPDAPLAT---YVNPEVVWASSETARHREGSVAMPGVDEEVERPARVRVRFQDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + I A+G LA CLQHE+D L+G+ + + LSRLKR+ + K+ K+ + Sbjct: 118 PRQIAAEGFLAACLQHEIDQLDGVFWTERLSRLKRERLLKRFGKVQRG 165 >gi|114330947|ref|YP_747169.1| peptide deformylase [Nitrosomonas eutropha C91] gi|114307961|gb|ABI59204.1| peptide deformylase [Nitrosomonas eutropha C91] Length = 176 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ DP L + ++ IE+ + + L+ +M + M + +G GLAA QIG+ ++V+ Sbjct: 1 MIKPVLKMGDPRLLQPAQRIEQFDTPVLKELLQDMQDTMAALNGAGLAAPQIGISLQVVI 60 Query: 61 I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V INP + +++ EGCLSIP R V R + + + Sbjct: 61 FGIEHSPRYPDVESVPFTVLINPILTPLTEEQEEDWEGCLSIPGMRGLVPRYTHLRYQGV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 D A G A +QHE DHLNGIL+ ++ L++ Sbjct: 121 DETATPIDRTVAGFHARVVQHECDHLNGILYPMRINDLRK 160 >gi|270692640|ref|ZP_06222945.1| peptide deformylase [Haemophilus influenzae HK1212] gi|270316024|gb|EFA28060.1| peptide deformylase [Haemophilus influenzae HK1212] Length = 132 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 58/134 (43%), Positives = 83/134 (61%), Gaps = 3/134 (2%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M + MY GIGLAA Q+ +L R++ ID++ + + I S+ + +EGC Sbjct: 1 MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQNQF---VLINPEILASEGETGIEEGC 57 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 LSIP +RA V R +TVR +D + + + ADGLLA C+QHE+DHLNGILF+D+LS LK Sbjct: 58 LSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 117 Query: 155 RDMITKKMSKLVQL 168 R I +K+ K + Sbjct: 118 RQRIKEKLLKYKKQ 131 >gi|262368804|ref|ZP_06062133.1| peptide deformylase [Acinetobacter johnsonii SH046] gi|262316482|gb|EEY97520.1| peptide deformylase [Acinetobacter johnsonii SH046] Length = 161 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + ILR + + E + +M L M+ M G+G+AA Q+ + Sbjct: 1 MSVILPVAQRGEDILRLKAARVADAEFNSDWLMQLASAMIATMLERSGVGIAAPQVYISK 60 Query: 57 RLVVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS ++ +EGCLS+P+ R V+R+ I Sbjct: 61 RVIIVASRPNLRYPDAPEMDAVVMVNPEILEFSQATTLGEEGCLSVPNERGQVQRAQSIK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V Y + +G A +QHE+DHLNGILF+D LS Sbjct: 121 VLYHTLTGEVMESTFEGFPARIVQHEIDHLNGILFVDRLS 160 >gi|89052958|ref|YP_508409.1| formylmethionine deformylase [Jannaschia sp. CCS1] gi|88862507|gb|ABD53384.1| formylmethionine deformylase [Jannaschia sp. CCS1] Length = 161 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 86/159 (54%), Gaps = 3/159 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++++PDP+L S + + + LI ++ + MY+ G GLAA QIGVL R+ V Sbjct: 1 MSVRRVLLWPDPLL---SVVCDAVVAVDPELIKDLFDTMYAAKGRGLAAPQIGVLQRVFV 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++P VFINP + +D +E CLSIPD V R +T+ + + Sbjct: 58 VDVTWKEGARDPRVFINPVVRDSGEDMRSMEEQCLSIPDLPMQVTRPTTLTLDWETPEGR 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 DG LA C+ HELDHL+G + DH S +R + Sbjct: 118 KTTGTFDGNLARCILHELDHLDGTVIFDHQSPARRAELE 156 >gi|291547147|emb|CBL20255.1| peptide deformylase [Ruminococcus sp. SR1/5] Length = 157 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L + SR ++K+ I LI +ML+ MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRTIRVQGDSVLTKKSRTVDKMTPRIGELITDMLDTMYDAMGVGLAAPQVGILKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + + + CLS+P V R ++ V+ D N Sbjct: 61 IDVGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKAFDVNMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 QI +GLLA HE+DHL+G ++ + Sbjct: 115 EQIYEGEGLLARAFCHEIDHLDGKMYTE 142 >gi|289625972|ref|ZP_06458926.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647973|ref|ZP_06479316.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488188|ref|ZP_07006225.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157467|gb|EFH98550.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869369|gb|EGH04078.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 179 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSELNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I + EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLNPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPDGQRIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|18394237|ref|NP_563974.1| PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase [Arabidopsis thaliana] gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like protein [Arabidopsis thaliana] gi|332191194|gb|AEE29315.1| peptide deformylase 1A [Arabidopsis thaliana] Length = 269 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R++V+ Sbjct: 82 EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141 Query: 62 DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P MV +NP + S+ +++ EGCLS+ +RA V+R Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + + A G A LQHE DHL+G L++D + Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 246 >gi|311748398|ref|ZP_07722183.1| peptide deformylase [Algoriphagus sp. PR1] gi|126576910|gb|EAZ81158.1| peptide deformylase [Algoriphagus sp. PR1] Length = 184 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+V + +PIL++ + I + + + +I NM M + +G+GLAA QI RL VI Sbjct: 1 MIYPIVAYGNPILKKEADEINE-GTALDEMIQNMFATMDNANGVGLAAPQINEGVRLFVI 59 Query: 62 DLQ-----DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 D + + FINP I+ D ++EGCLSIPD RA++ R +T+ Y D Sbjct: 60 DSNLMLDEEDEEKGIRKAFINPIILDEYGDDYSFEEGCLSIPDVRAEITRPEKLTIEYFD 119 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 N G+ A +QHE DHL GILF+D+ Sbjct: 120 ENWNLHEEEFSGMTARVIQHEYDHLEGILFVDY 152 >gi|328949669|ref|YP_004367004.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] gi|328449993|gb|AEB10894.1| Peptide deformylase [Marinithermus hydrothermalis DSM 14884] Length = 178 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYST-----DGIGLAAVQIGV 54 M + ++ +P+LR VS P+E ++ +++++ + + G G+AA QIGV Sbjct: 1 MAVREVLQLGNPLLREVSEPVEDPTSPEVARIVEDLRDTLAHWRATTTYGRGIAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L R+V ++L + P INP I S + V + CLS V+R +TVRY Sbjct: 61 LKRIVFLNLPE----LGPWPLINPTITAKSPETMVVWDACLSFLSIFMQVERHREVTVRY 116 Query: 115 MDCNAQHQIIY--ADGLLATCLQHELDHLNGILFIDHLSRLK----RDMITKKMS 163 D + L+ LQHE+DHL+GIL ID + +K R ++ Sbjct: 117 QDLRGTWHEVRAGEAHNLSELLQHEIDHLDGILAIDRVVDVKTIVTRQEFERRYR 171 >gi|159899991|ref|YP_001546238.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893030|gb|ABX06110.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 175 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 13/178 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M PL+ +P+LR+ + P + + ++ ++++M + G G+AA QIGV Sbjct: 1 MAVVPLIELGNPLLRQPATPFADPTSPEVARILNDMRDTLADMRQRIGYGRGIAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L RL++ID D +NP+ +S + E C S P V+R +TV Sbjct: 61 LKRLILIDTPDTNLV-----LVNPRFERWSREEDERYESCFSFPGIWGLVQRPLGVTVVA 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQLRD 170 + Q I A G L+ +QHE+DHL+G +++D L T++ K + + R+ Sbjct: 116 YTLAGEEQRIEASGSLSRIIQHEMDHLDGFVWLDRGPDLHSLCTTQEYEKRYISRERE 173 >gi|168183924|ref|ZP_02618588.1| peptide deformylase [Clostridium botulinum Bf] gi|182672944|gb|EDT84905.1| peptide deformylase [Clostridium botulinum Bf] Length = 150 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|253580144|ref|ZP_04857411.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251848663|gb|EES76626.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 158 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 88/148 (59%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D +L +VSRP+EK+ I +LI +MLE MY G+GLAA Q+G+L R+VV Sbjct: 1 MALRKIRLQGDEVLAKVSRPVEKMTPRIHDLIGDMLETMYDAMGVGLAAPQVGMLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + P+V INP+I+ S + + + CLS+P V R ++ V+ +D + Sbjct: 61 IDIGEG-----PIVLINPEILETSGEQTGDEG-CLSVPGMAGQVTRPNYVKVKALDEDMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 +GLLA HE+DHL+G ++ + Sbjct: 115 EVEYEGEGLLARAFCHEIDHLDGHMYTE 142 >gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1] gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC] gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10] gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC] Length = 184 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + P LRR + I I +I L +M E M + G+GLAA Q+G RL V+ Sbjct: 1 MIRELEYYGSPTLRREADAILDITDEIRQLAQDMYETMVAHKGVGLAAPQVGESVRLFVM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P V+INP + S+D + +EGCLSIP RADV R ITV+ + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSDVSEDLVLGREGCLSIPGLRADVYRPRSITVKAI 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK-RDMITKKMSKLVQ 167 + + Q + +G A + HE DHLNG+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLNGVLYIDKMEEPKDYKKFKSTLEKIRR 173 >gi|293572654|ref|ZP_06683622.1| peptide deformylase [Enterococcus faecium E980] gi|291607240|gb|EFF36594.1| peptide deformylase [Enterococcus faecium E980] Length = 163 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 86/149 (57%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ +I Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIALI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP+II + + CLSIP VKR+ +TVRY D + + Sbjct: 61 ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|332178945|gb|AEE14634.1| Peptide deformylase [Thermodesulfobium narugense DSM 14796] Length = 165 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 K+ ++ P+ +LR+ S P+ + + ++ +L++ M +M S +G+GLAA Q+G L RL + Sbjct: 4 KRKIITHPNSLLRKRSLPVLQFDKNLESLVEEMEYLMISNNGVGLAAPQVGELSRLFIYK 63 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + D+ I EGCLS+P V+R+ + V+ + Sbjct: 64 IDDNLQVVINPEIIEKVGSEVDV------EGCLSVPGVFGPVERAFKVIVQAQNIYGDTI 117 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKR--DMITKKMSKLVQ 167 I+ +G A +QHE DHLNG LFID L+ + K+ KL + Sbjct: 118 ILNKEGYEARVIQHEFDHLNGDLFIDKAEYLETAEERAKKQKEKLEK 164 >gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi] gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi] Length = 186 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 23 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 80 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + + Y+EGCLSIP ++ R I V++ D N + I Sbjct: 81 -ENRMARPLVFINPSITETSYELNSYKEGCLSIPGVYYNLMRPNGIVVKFYDENGKSFTI 139 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNGILFID+ + I K+ K ++ R Sbjct: 140 ENSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 181 >gi|299535919|ref|ZP_07049239.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298728671|gb|EFI69226.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 164 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 7/155 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKKVIENPAKVLSTPCAEVTEINDEIITLLDDLYDTMVEYDGVGIAAPQIDVGLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + + + +D V EGCLS P +V+R +++ + D + Sbjct: 61 VELGEERDIL----EMINPTVVETDGAEVDIEGCLSFPGLYGEVERPSYVKIEACDREGR 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A G A + HE+DHL+G+LF S++KR Sbjct: 117 VYELEAGGFDARAILHEIDHLDGVLFD---SKIKR 148 >gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 163 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 1 MVKKPLV--IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + + + ILR+ ++ +E I++ ++ L+++M + MY +G+GLAA Q+GVL RL Sbjct: 1 MAYRNIRNNKENNTILRKQAKKVENIDNKVLTLLEDMADTMYQEEGVGLAAPQVGVLKRL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 VVID+ + + EGCLS+P +V R + ++ + Sbjct: 61 VVIDIGAGLIKLINPEIME------QSGQQQGMEGCLSVPGISGEVVRPQKVRIKAQNET 114 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + LLA + HE+DHLNG+LFID + Sbjct: 115 GAYFELEGTDLLARAICHEIDHLNGVLFIDKIVP 148 >gi|302037899|ref|YP_003798221.1| peptide deformylase [Candidatus Nitrospira defluvii] gi|300605963|emb|CBK42296.1| Peptide deformylase [Candidatus Nitrospira defluvii] Length = 163 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 3/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +P++ +P L+ + + + + ++ +ML+ + ++ G+ LAA QIG +++V Sbjct: 1 MAIRPILQYPHQALKSTNAAVAPSDPAVQAVVQDMLDTLAASPGVALAAPQIGHAVQVIV 60 Query: 61 IDLQDHAHRKNP--MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +D+ + +V +NP I++ SV + CLS+PDY +V R V + Sbjct: 61 VDVSRKKGERGHGLVVLLNPVILSLEGKKSVREG-CLSVPDYTGNVLRYEEALVEGLTPE 119 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + + A G A QHE+DHLNG+LF+D + L D+ +K Sbjct: 120 GRVVTVSASGFGALAFQHEVDHLNGMLFLDRIESLSTDLFRRK 162 >gi|318061932|ref|ZP_07980653.1| polypeptide deformylase [Streptomyces sp. SA3_actG] Length = 161 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 68/148 (45%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +R + L++++ MY+ G+GLAA QIG R+ V D D R++ Sbjct: 2 LTTPARETGDFGPWLEKLVEDLFATMYAARGVGLAAPQIGEDVRVFVYDCPDDEDRRHLG 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP+++ EGCLS+P A R V + + + G A C Sbjct: 62 HLVNPRLVEVDGPVVRGPEGCLSLPGLEAGTPRFDRAVVEGRTADGARRRVEGTGFFARC 121 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKK 161 LQHE DHL G L++D L + + ++ Sbjct: 122 LQHEYDHLEGGLYVDRLDARRHRKVLRE 149 >gi|153939969|ref|YP_001391592.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|152935865|gb|ABS41363.1| peptide deformylase [Clostridium botulinum F str. Langeland] gi|295319620|gb|ADF99997.1| peptide deformylase [Clostridium botulinum F str. 230613] Length = 150 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + + D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA Q+G+L RLV Sbjct: 1 MALRQIRLVDDEILRKESKVVEIVDDKIRQILNDMADTMYNTENGGGLAAPQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|254490724|ref|ZP_05103908.1| peptide deformylase [Methylophaga thiooxidans DMS010] gi|224464079|gb|EEF80344.1| peptide deformylase [Methylophaga thiooxydans DMS010] Length = 178 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 6/168 (3%) Query: 5 PLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ P+LR+ + P+ + + +L + G+G+AA Q+G+ + ++ Sbjct: 6 DILQLGHPLLRQRAEPVYDILAPAFQAQAKALLSFVIEKGGMGIAAPQVGISQQFFILSS 65 Query: 64 QDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ P INP+ I SD + EGCLS+P RA V R ITVRY Sbjct: 66 HPNSRYPYAPDVPPFFVINPERIAHSDTSNKDWEGCLSLPGIRALVPRFDDITVRYQTLE 125 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 DG LA QHE DHLNG +F+D + M+ K+ K + Sbjct: 126 GDTVEKMYDGFLARVFQHEHDHLNGHVFLDRVESNYDVMMEKEWQKQI 173 >gi|237796060|ref|YP_002863612.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229262415|gb|ACQ53448.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 178 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + I +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIIIINPKFLKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|261749262|ref|YP_003256947.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497354|gb|ACX83804.1| peptide deformylase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 180 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 7/158 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN--SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + P+V++ +PILR+ I+ + I L+ +M E ++ GIGLAA QIG RL Sbjct: 1 MILPIVVYGNPILRKKCIDIDIYSCRKKIQELVKDMFETIHKVKGIGLAAPQIGKNIRLF 60 Query: 60 VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +++ VFIN +I+ + EGCLSIP VKR + +++ Y Sbjct: 61 IVETPYLLENGKDIDNYKEVFINARILKIHGKEYEFNEGCLSIPGIMGYVKRKSHVSIEY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 D N + + G+ A +QHE DH+ G LFID+ S Sbjct: 121 YDHNWKKKKETLKGICARVIQHEYDHMEGKLFIDYFSS 158 >gi|182701890|ref|ZP_02617367.2| peptide deformylase [Clostridium botulinum Bf] gi|182674086|gb|EDT86047.1| peptide deformylase [Clostridium botulinum Bf] Length = 178 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D +L+RVSR +E I+ +I +I ++ + +Y+ GIGLAA QIG L R+ + Sbjct: 23 MAIREILQVGDKMLKRVSRKVECIDDEITGVIKDLKDTLYAGTGIGLAAPQIGYLKRIFI 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + I +EGCLS P Y V R + + ++ + Sbjct: 83 I----DLRNGQEPIIIINPKFLKKIGKEESEEGCLSYPGYEGIVIRPRRVAITGLNEKGE 138 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 A GLL HE DHL+GI++ID ++ + Sbjct: 139 EVTYEATGLLKDAFCHEYDHLDGIVYIDKAKKVYK 173 >gi|56964188|ref|YP_175919.1| peptide deformylase [Bacillus clausii KSM-K16] gi|81678844|sp|Q5WFA2|DEF_BACSK RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56910431|dbj|BAD64958.1| peptide deformylase [Bacillus clausii KSM-K16] Length = 183 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V +PILR+V+ P+E + + + +MLE + ++ G+GLAA Q Sbjct: 6 DIVREGNPILRKVAEPVELPLTDEDKQTLVDMLEFIKNSQDPEIAEKYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108 IG+ RL I D M NPK+++ +++ + D V R A Sbjct: 66 IGISKRLFAIHATDENGNLYSMGIANPKVVSHSVETNELENGEGCLSVDRDVPGLVPRRA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +T+ +D + G +A QHELDHL+GI+F D + L+ Sbjct: 126 RLTITGVDHEGNDVRMRLRGYIAIVFQHELDHLDGIMFYDRIEGLE 171 >gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1] gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1] Length = 165 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ +E I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQVENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 60 -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|195952867|ref|YP_002121157.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] gi|195932479|gb|ACG57179.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1] Length = 164 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 98/164 (59%), Gaps = 5/164 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60 + ++++P+P+L+ S+ + KI+ +I+ I+N+ E MYS D G+A+ Q+GVL +VV Sbjct: 1 MIYEILVYPNPLLKEKSKDVNKIDDNIIKHIENLKETMYSKDFCTGIASSQVGVLQNIVV 60 Query: 61 IDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +D + +I S+D +++EGCLS+P+Y A+++R ++V+ +D Sbjct: 61 MDASRFRKPPKNHHGLITLINPVIIKSEDSIIFREGCLSVPEYTANIQRYKHVSVKALDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 I+ +G A QHELDHLNGILF+D L+ L ++ +K Sbjct: 121 KENEIILDLEGPEAVLFQHELDHLNGILFLDRLTSLD-NLFKRK 163 >gi|53804337|ref|YP_113830.1| peptide deformylase [Methylococcus capsulatus str. Bath] gi|53758098|gb|AAU92389.1| polypeptide deformylase [Methylococcus capsulatus str. Bath] Length = 191 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +P+LR+ +RP+ ++ + LI +M E M G+GLAA QIG +L V Sbjct: 8 LKIVQAGEPVLRQRARPLSPEEIRSAAVQALIGHMRETMRDAPGVGLAAPQIGQGLQLAV 67 Query: 61 IDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 I+ + H V +NP+I+ S++ V+ EGCLS+ + A V+R Sbjct: 68 IEDRADYHRGLSAEELAARGREPVPFHVIVNPEIVARSEETDVFHEGCLSLAGFSARVER 127 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++ V +D + Q I A G A LQHE+DHL+G L+ID + Sbjct: 128 ARWVRVSCLDHRGEPQTIEASGWYARILQHEIDHLHGRLYIDRMDP 173 >gi|189423599|ref|YP_001950776.1| peptide deformylase [Geobacter lovleyi SZ] gi|189419858|gb|ACD94256.1| peptide deformylase [Geobacter lovleyi SZ] Length = 169 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M +P++ +P P+L++++ + ++ I L+ ++++ M + +G+AA QIGV R+ Sbjct: 1 MAVQPILKYPHPLLKKMAHRVAALDEPIHTLVQDLIDTMQAGPGSVGVAAPQIGVGLRVC 60 Query: 60 VID----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 V+D + + +NP+II+ S + + + + Sbjct: 61 VVDVSNSRHGKDNNHGLLCMVNPEIISRSGLAVMREGCMSVPDYTGDVERATEITVRFLD 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 + Q + + A G A +QHE+DHL+G+LF+D + + + +K Sbjct: 121 SRSGQQREVAASGFEAVAIQHEMDHLDGLLFLDRIISVSTGLFRRK 166 >gi|330957627|gb|EGH57887.1| peptide deformylase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 179 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIGV +L Sbjct: 1 MIRNILKMGDERLLRIAPPVPTEMFGSSELNTLIADMFETMHSVSGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + + +NP I S + EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILLNPVITPLSPELEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D + A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPEGKPIERIAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|295399645|ref|ZP_06809626.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] gi|294978048|gb|EFG53645.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93] Length = 184 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++ P LR+V+ P+ + + ++ ++L+ + + GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQILQSLLDYVKMSQDPEIAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D NPKI++ S + + V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + + GL A QHE+DHLNGI+F DH+ Sbjct: 123 RYARITVTGTTIDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169 >gi|237795811|ref|YP_002863363.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|229264121|gb|ACQ55154.1| peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 150 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ +E ++ I ++++M + MY+ +G GLAA+Q+G+L RLV Sbjct: 1 MALRQIRLFDDEILRKESKIVEIVDDKIRQILNDMADTMYNTENGGGLAALQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I + EGCLSIP+ + R A +TV+ ++ N Sbjct: 61 VIDMGQGLIKLV------NPKIIKQEGTQEVIEGCLSIPNKFGKLIRPAKVTVQALNENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + I+ G LA C HE+DHL GILF D ++ Sbjct: 115 EEIILTGTGDLAKCFCHEIDHLEGILFTDLVT 146 >gi|91794262|ref|YP_563913.1| peptide deformylase [Shewanella denitrificans OS217] gi|91716264|gb|ABE56190.1| Peptide deformylase [Shewanella denitrificans OS217] Length = 168 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 5/159 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +PIL R++ + + ++ ++ L D+ML M + +G+G+AA Q+ + V+ Sbjct: 6 ILPIAITGEPILNRIAVKVSQFDASLIQLADDMLATMMAANGVGIAAGQVHSPLAMFVMA 65 Query: 63 LQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + N P V INP+I+++S EGCLSIPD R + RS I R+ + Sbjct: 66 SRPNERYPNAPVTEPRVIINPQILSYSTQTQAGIEGCLSIPDSRMSIVRSQQIDTRFQNL 125 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A QHE DH+ GI I+ L++ ++ Sbjct: 126 KGEFIEQSFSDFEARIFQHEFDHIKGITLIERLAQQQKQ 164 >gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl] gi|254767575|sp|A9WHG7|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767577|sp|B9LBS4|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl] gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl] Length = 188 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 22/186 (11%) Query: 1 MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ D IL+ RP++ + ++ L+ +M E M + G+GLAA QIG+ Sbjct: 1 MAIRRILRIDDAEDRKILKMQCRPVKLPDRNLKQLVADMFETMRAAHGVGLAAPQIGIPI 60 Query: 57 RLVVIDLQDHAHRK-----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ + P V INP+I+ S + + EGCLS+P + V Sbjct: 61 QLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKMSGEEVMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R ++TV + D N +H + G L +QHE+DHLNGILF + + L + Sbjct: 121 RQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQHEVDHLNGILFTERIRDL------STLRD 174 Query: 165 LVQLRD 170 + + RD Sbjct: 175 ITKERD 180 >gi|257899948|ref|ZP_05679601.1| formylmethionine deformylase [Enterococcus faecium Com15] gi|257837860|gb|EEV62934.1| formylmethionine deformylase [Enterococcus faecium Com15] Length = 163 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGKNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP+II + + CLSIP VKR+ +TVRY D + + Sbjct: 61 ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|153875918|ref|ZP_02003500.1| Polypeptide deformylase [Beggiatoa sp. PS] gi|152067618|gb|EDN66500.1| Polypeptide deformylase [Beggiatoa sp. PS] Length = 174 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M L+I+PD L++VS + + + + ++ E M + +G+AA Q+G R+V Sbjct: 1 MALLDLLIYPDVRLKQVSASVRVFDEKLHAFLTDLEETMRAGLGSVGIAAPQVGYFERIV 60 Query: 60 VIDLQDHAHRKNPMVFINPKI-ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +ID+ K+ I IT F V +EGC+S+PDY +V R+ I + +D N Sbjct: 61 IIDVSSKPKIKHHGHLILVNPEITQWKGFEVGREGCMSVPDYTGNVIRAKKIHLMALDEN 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 Q +G A +QHE+DHL+G+LF+D L + D+ ++ Sbjct: 121 GVQQEYDMEGYEARAVQHEIDHLDGLLFLDRLVSRRYDLFQRR 163 >gi|254818949|ref|ZP_05223950.1| peptide deformylase [Mycobacterium intracellulare ATCC 13950] Length = 197 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++P+ ++ LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVVPIRIVGDPVLHTPTKPVPVAADGSLPAELPALIADLYDTMDAAHGVGLAANQIGVG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D R ++ D EGCLS+P R+ Sbjct: 61 LRVFVYDCADERGRTERRRGVVVNPVLETSEVPETMPDPDNDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + + + L A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDADGNPVALEGNDLFARMLQHETGHLDGFLYLDRLVGRHARSAKRAVK 175 >gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318216|sp|Q0AXL3|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 152 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 13/165 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ ILR + P+++IN+ ++ ++DNM + MY+ DG+GLAA QIG+ R++V Sbjct: 1 MSVYQVITVPNDILRGKALPVKEINAGVLRVLDNMRDTMYAADGVGLAAPQIGIPKRMIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ ++ + + + EGCLS+P V R+ + V+ +D N Q Sbjct: 61 VDIGENLLELINPEIL------KQEGNQLGSEGCLSVPGIVGRVNRAKKVLVKGLDRNGQ 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LLA LQHE+DHL GILFID I ++ KL Sbjct: 115 ELNFAAVDLLAKVLQHEIDHLEGILFIDKA-------IETRIEKL 152 >gi|117926769|ref|YP_867386.1| peptide deformylase [Magnetococcus sp. MC-1] gi|117610525|gb|ABK45980.1| peptide deformylase [Magnetococcus sp. MC-1] Length = 177 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 7/176 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLY 56 M ++++PD L + R +E + +++++E +GLAA Q+ Sbjct: 1 MAILDVLVYPDQRLLQPCRSLEAEEFKTAAFQAFVEDLIETTQHAPGCVGLAAPQVDHAI 60 Query: 57 RLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 R+VV++ + + I + +EGC+S+PDY +V R+ I+V+ Sbjct: 61 RMVVVNCGLARKPPDEHHGELILCNPEIISWEGMETAREGCMSVPDYTGNVMRATHISVQ 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + D + Q Q+ + G A +QHE+DHL G LF D + K D+ +K+ + + R Sbjct: 121 FQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRVVSRKADLFPRKVYQKKRNR 176 >gi|255994858|ref|ZP_05427993.1| peptide deformylase [Eubacterium saphenum ATCC 49989] gi|255993571|gb|EEU03660.1| peptide deformylase [Eubacterium saphenum ATCC 49989] Length = 154 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +LR+ +RP+ ++ I L+ +M E M+ G+G+AA Q+G+L R+ + Sbjct: 1 MALRQVRKKGDELLRKKARPVGEVTDRIKLLLQDMEETMHKEGGVGIAAPQVGILKRMFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + +P I+P+II +EGCLS+P V R I V+Y + + Sbjct: 61 M----EPVQGSPEYVIDPEIIKA-SGEQECEEGCLSVPGVVGTVIRPEKIEVKYTGLDGK 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + A HE DHL G+LFID S +++ Sbjct: 116 ERRRLLTEFEAIVFSHEFDHLEGVLFIDKASNIRK 150 >gi|262200670|ref|YP_003271878.1| peptide deformylase [Gordonia bronchialis DSM 43247] gi|262084017|gb|ACY19985.1| peptide deformylase [Gordonia bronchialis DSM 43247] Length = 200 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 13/163 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I +P+L R + P+ ++ +++ L+D+M + M + G+GLAA Q+GV Sbjct: 1 MAILPICIIGEPVLHRRTEPVPLDDAGKPSAEVIALLDDMYDTMDAAHGVGLAANQVGVG 60 Query: 56 YRLVVIDLQDHAHRKNPMV--------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 R+ V D + +I D EGCLS+P + R+ Sbjct: 61 LRMFVYDCPEGERYVPERRRGEVINPVLETSEIPETMPDPDDNDEGCLSVPGEQFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D ++ G A LQHE HL+G L++D L Sbjct: 121 DWARVTGVDRTGAEVVVEGTGFFARMLQHETGHLDGFLYVDVL 163 >gi|300861509|ref|ZP_07107593.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|312953219|ref|ZP_07772065.1| peptide deformylase [Enterococcus faecalis TX0102] gi|295114433|emb|CBL33070.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848970|gb|EFK76723.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|310628836|gb|EFQ12119.1| peptide deformylase [Enterococcus faecalis TX0102] gi|315031809|gb|EFT43741.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315152788|gb|EFT96804.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315154709|gb|EFT98725.1| peptide deformylase [Enterococcus faecalis TX0043] gi|323479052|gb|ADX78491.1| peptide deformylase [Enterococcus faecalis 62] Length = 164 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + + +I S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESG----HFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|119960758|ref|YP_947936.1| peptide deformylase [Arthrobacter aurescens TC1] gi|119947617|gb|ABM06528.1| peptide deformylase [Arthrobacter aurescens TC1] Length = 224 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 6 LVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V P+LR+++ P + ++++ ++ M EVM+ G+GLAA Q+G+ +L V++ Sbjct: 37 IVQAGHPVLRQLAAPYDGQIDDAELAAFLERMKEVMHDAPGVGLAAPQLGIPLQLAVLED 96 Query: 64 QDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + +NP+ + + + EGCLS+ Y+A V R + +R Sbjct: 97 KYEVDPESAAVRHREPLEFFAIVNPQYRPLGTETASFYEGCLSVSGYQAVVTRHRNVELR 156 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Y + + + G A +QHE DHL GIL++D Sbjct: 157 YTNPAGEPVEEWFSGWQARIVQHETDHLRGILYLDR 192 >gi|318061364|ref|ZP_07980085.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318077742|ref|ZP_07985074.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 242 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + + +L R ++ L+ +M MY +G GLAA Q+ V RL V Sbjct: 53 MLR-VTEAGEEVLARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFV 111 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP I + EGCLS+P + ++ R+ VR +D + Sbjct: 112 YDCFDDEGARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLD 171 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G A CLQHE DHLNGIL++D L R R + M++ Sbjct: 172 GRPVTIEGTGYFARCLQHETDHLNGILYVDRLGRRARRTVLTDMAE 217 >gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a] gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a] gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a] gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a] Length = 165 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 60 -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|255970684|ref|ZP_05421270.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256618121|ref|ZP_05474967.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256761051|ref|ZP_05501631.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256854795|ref|ZP_05560159.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257420429|ref|ZP_05597419.1| formylmethionine deformylase [Enterococcus faecalis X98] gi|255961702|gb|EET94178.1| formylmethionine deformylase [Enterococcus faecalis T1] gi|256597648|gb|EEU16824.1| formylmethionine deformylase [Enterococcus faecalis ATCC 4200] gi|256682302|gb|EEU21997.1| formylmethionine deformylase [Enterococcus faecalis T3] gi|256710355|gb|EEU25399.1| formylmethionine deformylase [Enterococcus faecalis T8] gi|257162253|gb|EEU92213.1| formylmethionine deformylase [Enterococcus faecalis X98] Length = 169 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 87/149 (58%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 6 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + + +I S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 66 EIDEESG----HFELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|258489222|gb|ACV72595.1| peptide deformylase [Pseudomonas syringae pv. cerasicola] Length = 169 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + PD P+LR+VS ++K N ++ L+D+M E M +G+GLAA QIGV R++ Sbjct: 1 MIRAFLP-PDAPLLRKVSAQVDKFSNDELRTLVDDMFETMRDGNGVGLAAPQIGVDARII 59 Query: 60 VIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VI+ + R P + +IT + +EGC S+P V R A I Sbjct: 60 VIEFSGNEERAPGESPVPPTVLINPVITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + + A+G A +QHE+DHLNGIL+ID S Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYIDIAS 156 >gi|227554544|ref|ZP_03984591.1| peptide deformylase [Enterococcus faecalis HH22] gi|257078288|ref|ZP_05572649.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|293385128|ref|ZP_06630954.1| peptide deformylase [Enterococcus faecalis R712] gi|293389101|ref|ZP_06633573.1| peptide deformylase [Enterococcus faecalis S613] gi|294779979|ref|ZP_06745359.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|307273623|ref|ZP_07554851.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307288889|ref|ZP_07568862.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292141|ref|ZP_07572007.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312910850|ref|ZP_07769686.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|227176342|gb|EEI57314.1| peptide deformylase [Enterococcus faecalis HH22] gi|256986318|gb|EEU73620.1| formylmethionine deformylase [Enterococcus faecalis JH1] gi|291077605|gb|EFE14969.1| peptide deformylase [Enterococcus faecalis R712] gi|291081569|gb|EFE18532.1| peptide deformylase [Enterococcus faecalis S613] gi|294452960|gb|EFG21382.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|306496794|gb|EFM66345.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306500161|gb|EFM69505.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306509636|gb|EFM78678.1| peptide deformylase [Enterococcus faecalis TX0855] gi|311288873|gb|EFQ67429.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|315034825|gb|EFT46757.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315150901|gb|EFT94917.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315164416|gb|EFU08433.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167224|gb|EFU11241.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315172963|gb|EFU16980.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573272|gb|EFU85463.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|327536241|gb|AEA95075.1| formylmethionine deformylase [Enterococcus faecalis OG1RF] Length = 164 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + R + +I S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 61 EIDEESGR----FELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 117 MEVTAYGYLARAFQHEIDHLNGELFIDKM 145 >gi|15594411|ref|NP_212199.1| peptide deformylase [Borrelia burgdorferi B31] gi|6014950|sp|O51092|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia burgdorferi B31] Length = 172 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 9 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 66 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 67 -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 125 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 126 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 166 >gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a] gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a] Length = 165 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S +FS Y+EGCLSIP D+ R + + + D N + I Sbjct: 60 -ENKMARPLVFINPSIIETSYEFSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|302518710|ref|ZP_07271052.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302427605|gb|EFK99420.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 213 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 4/166 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + + IL R ++ L+ +M MY +G GLAA Q+ V RL V Sbjct: 24 MLR-VTEAGEEILARRCAGATVFGTPELAQLVADMFLTMYLAEGAGLAANQVDVDLRLFV 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +NP I + EGCLS+P + ++ R+ VR +D + Sbjct: 83 YDCFDDEGARHVGHVLNPVIDEAASGRALVDDVEGCLSVPGAQHELPRADRTVVRGVDLD 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G A CLQHE DHLNGIL++D L+R R + M++ Sbjct: 143 GRPVTIEGTGYFARCLQHETDHLNGILYVDRLARRARRTVLTDMAE 188 >gi|69245426|ref|ZP_00603421.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257879837|ref|ZP_05659490.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257882563|ref|ZP_05662216.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257886039|ref|ZP_05665692.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257891678|ref|ZP_05671331.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257894153|ref|ZP_05673806.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|258614263|ref|ZP_05712033.1| peptide deformylase [Enterococcus faecium DO] gi|260559510|ref|ZP_05831691.1| formylmethionine deformylase [Enterococcus faecium C68] gi|261206661|ref|ZP_05921359.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289565022|ref|ZP_06445476.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293553674|ref|ZP_06674298.1| peptide deformylase [Enterococcus faecium E1039] gi|293563684|ref|ZP_06678125.1| peptide deformylase [Enterococcus faecium E1162] gi|293570096|ref|ZP_06681176.1| peptide deformylase [Enterococcus faecium E1071] gi|294614918|ref|ZP_06694809.1| peptide deformylase [Enterococcus faecium E1636] gi|294618610|ref|ZP_06698149.1| peptide deformylase [Enterococcus faecium E1679] gi|294623686|ref|ZP_06702519.1| peptide deformylase [Enterococcus faecium U0317] gi|314938232|ref|ZP_07845532.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943129|ref|ZP_07849927.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949326|ref|ZP_07852668.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952260|ref|ZP_07855274.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314992116|ref|ZP_07857566.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996298|ref|ZP_07861354.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|68195808|gb|EAN10244.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257814065|gb|EEV42823.1| formylmethionine deformylase [Enterococcus faecium 1,230,933] gi|257818221|gb|EEV45549.1| formylmethionine deformylase [Enterococcus faecium 1,231,502] gi|257821895|gb|EEV49025.1| formylmethionine deformylase [Enterococcus faecium 1,231,501] gi|257828038|gb|EEV54664.1| formylmethionine deformylase [Enterococcus faecium 1,231,410] gi|257830532|gb|EEV57139.1| formylmethionine deformylase [Enterococcus faecium 1,231,408] gi|260074609|gb|EEW62930.1| formylmethionine deformylase [Enterococcus faecium C68] gi|260079154|gb|EEW66847.1| formylmethionine deformylase [Enterococcus faecium TC 6] gi|289163229|gb|EFD11075.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291587468|gb|EFF19352.1| peptide deformylase [Enterococcus faecium E1071] gi|291592204|gb|EFF23822.1| peptide deformylase [Enterococcus faecium E1636] gi|291595129|gb|EFF26467.1| peptide deformylase [Enterococcus faecium E1679] gi|291596901|gb|EFF28119.1| peptide deformylase [Enterococcus faecium U0317] gi|291602249|gb|EFF32477.1| peptide deformylase [Enterococcus faecium E1039] gi|291604368|gb|EFF33861.1| peptide deformylase [Enterococcus faecium E1162] gi|313589542|gb|EFR68387.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593330|gb|EFR72175.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595602|gb|EFR74447.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313598137|gb|EFR76982.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313642428|gb|EFS07008.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644275|gb|EFS08855.1| peptide deformylase [Enterococcus faecium TX0082] Length = 163 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+R ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKRTAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP+II + + CLSIP VKR+ +TVRY D + + Sbjct: 61 ----EVDEGEKFELINPEIIEAKGESLDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|256958401|ref|ZP_05562572.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256960470|ref|ZP_05564641.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256962963|ref|ZP_05567134.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|257080477|ref|ZP_05574838.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|257083202|ref|ZP_05577563.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|257088235|ref|ZP_05582596.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257091366|ref|ZP_05585727.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257417251|ref|ZP_05594245.1| formylmethionine deformylase [Enterococcus faecalis AR01/DG] gi|257417968|ref|ZP_05594962.1| formylmethionine deformylase [Enterococcus faecalis T11] gi|256948897|gb|EEU65529.1| formylmethionine deformylase [Enterococcus faecalis DS5] gi|256950966|gb|EEU67598.1| formylmethionine deformylase [Enterococcus faecalis Merz96] gi|256953459|gb|EEU70091.1| formylmethionine deformylase [Enterococcus faecalis HIP11704] gi|256988507|gb|EEU75809.1| formylmethionine deformylase [Enterococcus faecalis E1Sol] gi|256991232|gb|EEU78534.1| formylmethionine deformylase [Enterococcus faecalis Fly1] gi|256996265|gb|EEU83567.1| formylmethionine deformylase [Enterococcus faecalis D6] gi|257000178|gb|EEU86698.1| formylmethionine deformylase [Enterococcus faecalis CH188] gi|257159079|gb|EEU89039.1| formylmethionine deformylase [Enterococcus faecalis ARO1/DG] gi|257159796|gb|EEU89756.1| formylmethionine deformylase [Enterococcus faecalis T11] Length = 169 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 88/149 (59%), Gaps = 4/149 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 6 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 65 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + R + +I S+ EGCLSIP+ V+R+ +TVRY D + Sbjct: 66 EIDEESGR----FELINPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEE 121 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHLNG LFID + Sbjct: 122 MEVTAYGYLARAFQHEIDHLNGELFIDKM 150 >gi|254468385|ref|ZP_05081791.1| peptide deformylase [beta proteobacterium KB13] gi|207087195|gb|EDZ64478.1| peptide deformylase [beta proteobacterium KB13] Length = 162 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 75/161 (46%), Gaps = 5/161 (3%) Query: 9 FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-----DL 63 +P L +VS P++ D+ LID+M E M + DG GLAA QIGV RLV+ D Sbjct: 1 MGNPELLKVSEPVDFEKEDLTTLIDDMKETMKANDGAGLAAPQIGVFKRLVIFGFDTNDR 60 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 A V INP I SD+ EGCLS+P R V R I D Sbjct: 61 YPEADSVPFTVLINPIITPLSDEKENGWEGCLSVPGLRGVVPRFTHIKYEGYDAEGNKIE 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A +QHE DHL+GIL+ + + +++ K Sbjct: 121 REVEDFHARVVQHECDHLDGILYPMKIEDYRYFGFHEEIFK 161 >gi|239826455|ref|YP_002949079.1| peptide deformylase [Geobacillus sp. WCH70] gi|239806748|gb|ACS23813.1| peptide deformylase [Geobacillus sp. WCH70] Length = 184 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLA 48 K ++ P LR+V+ P+ S+ + +L+D + E GIGLA Sbjct: 3 TMKDIIKEGHPTLRKVAEPVSLPPSEEDKQVLQSLLDYVKMSQNPELAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D NPKI++ S + + V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLYSYALFNPKIVSHSVQQCYLTSGEGCLSVDRNVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV + + GL A QHE+DHLNGI+F DH+ Sbjct: 123 RYARITVTGTTLEGKEVTLRLKGLPAIVFQHEIDHLNGIMFYDHIDP 169 >gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42] Length = 160 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPADEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + + + CLS P DV R ++ V+ D + Sbjct: 61 VDIGEESGR---IDLVNPVILEKSGEQTGVEG-CLSFPGVYGDVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ A+G LA +QHE+DHL+GILF ++ Sbjct: 117 PFILEAEGFLARAVQHEMDHLDGILFTSKIT 147 >gi|256424099|ref|YP_003124752.1| peptide deformylase [Chitinophaga pinensis DSM 2588] gi|256039007|gb|ACU62551.1| peptide deformylase [Chitinophaga pinensis DSM 2588] Length = 191 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 14/179 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 P+V + PILR+ P++K + LI+NM + + +G GLA QI + R+ +ID + Sbjct: 2 PIVPYGSPILRKQCSPVDKNYDGLDKLIENMWHTLENANGSGLATPQINLPIRIFIIDSE 61 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + NP FINP+I +S+ EGCLSIP A V R + Sbjct: 62 TSFNTMNPEERKVHFEGDNGIREVFINPEITEYSEAKCDDLEGCLSIPGVAAIVSRPYAV 121 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + Y D N Q +GL A +QHE DH+ G L++D+LS LK ++TKK++++ + R Sbjct: 122 KIEYYDRNFQKHTKAFNGLTARIIQHEFDHIEGRLYLDYLSSLKMKLLTKKLAQIKKGR 180 >gi|218532205|ref|YP_002423021.1| peptide deformylase [Methylobacterium chloromethanicum CM4] gi|254563274|ref|YP_003070369.1| peptide deformylase [Methylobacterium extorquens DM4] gi|218524508|gb|ACK85093.1| formylmethionine deformylase [Methylobacterium chloromethanicum CM4] gi|254270552|emb|CAX26555.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens DM4] Length = 176 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPVSATGEALTGESLRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ +++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHAV---YVDPVVAWASPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL + Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171 >gi|240140764|ref|YP_002965244.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] gi|240010741|gb|ACS41967.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Methylobacterium extorquens AM1] Length = 176 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 8/174 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDI-----MNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL+ +PD L R + P+ + + L ++L+ + + +GL A+ IG Sbjct: 1 MPVRPLIFYPDARLHRAAEPVSANSESLTGESWRALAADVLDTLGAVSAMGLTAIHIGRP 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+VVI LQ +++P + S + + + EG +S+P V+R A + VRY Sbjct: 61 ERVVVIRLQPDEPHAV---YVDPVVAWSSPERAAHPEGSVSMPGVVEPVERPARVRVRYR 117 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 D + A+GL A CLQHE+D L+GI +ID L+RL+R+ + K+ +KL + Sbjct: 118 DLDGAEHEEEAEGLRAACLQHEIDQLDGIFWIDRLTRLRRERVLKRYAKLRAQQ 171 >gi|257486818|ref|ZP_05640859.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988665|gb|EGH86768.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010288|gb|EGH90344.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 179 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R++ P+ +S + LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIRSILKMGDERLLRIAPPVPADMFGSSKLNTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + +NP I S EGCLS+P R V R I Sbjct: 61 VIFGFERSERYPQAEAVPQTILLNPLITPLSPSLEEGWEGCLSVPGLRGMVNRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPEGQPVERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|325831341|ref|ZP_08164595.1| peptide deformylase [Eggerthella sp. HGA1] gi|325486595|gb|EGC89043.1| peptide deformylase [Eggerthella sp. HGA1] Length = 183 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 58/162 (35%), Positives = 82/162 (50%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVI Sbjct: 3 TVISIVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVI 62 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D ++P+V +NP ++ D V EGCLS P + R F VRY D + + Sbjct: 63 DCDQDEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEE 122 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I +GLL CLQHELDHL+GI + + R + Sbjct: 123 WEIEGEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 164 >gi|227552688|ref|ZP_03982737.1| peptide deformylase [Enterococcus faecium TX1330] gi|257888656|ref|ZP_05668309.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257897388|ref|ZP_05677041.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|293378852|ref|ZP_06625007.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227178175|gb|EEI59147.1| peptide deformylase [Enterococcus faecium TX1330] gi|257824710|gb|EEV51642.1| formylmethionine deformylase [Enterococcus faecium 1,141,733] gi|257833953|gb|EEV60374.1| formylmethionine deformylase [Enterococcus faecium Com12] gi|292642393|gb|EFF60548.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 163 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I P+ L+ ++PI+ I + + L+DN+ E M + DGIG+AA Q+G R+ VI Sbjct: 1 MRYPILIHPNDKLKIPAQPIDVITDETIALLDNLYETMIANDGIGIAAPQVGQNKRIAVI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 INP+II + + CLSIP VKR+ +TVRY D + + Sbjct: 61 ----EVDEGEKFELINPEIIEAKGESMDVEG-CLSIPHVYGTVKRADEVTVRYYDRDGEE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA QHE+DHL+GILFI+ + Sbjct: 116 IEVTAFGYLARAFQHEIDHLDGILFIEKM 144 >gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7] gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3] Length = 160 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 4/151 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKIVTHPAEVLETPAEEVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP I+ S + + CLS P +V R ++ V+ D + Sbjct: 61 VDIGEESGR---IDLVNPVILEKSGEQIGVEG-CLSFPGVYGEVTRPDYVKVKAYDRKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ A+G LA +QHE+DHL GILF ++ Sbjct: 117 PFIVEAEGFLARAIQHEMDHLEGILFTSKIT 147 >gi|78101135|pdb|1ZXZ|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101136|pdb|1ZXZ|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-5000 Mme As Precipitant gi|78101137|pdb|1ZY0|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101138|pdb|1ZY0|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a); Crystals Grown In Peg-6000 gi|78101139|pdb|1ZY1|A Chain A, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser gi|78101140|pdb|1ZY1|B Chain B, X-Ray Structure Of Peptide Deformylase From Arabidopsis Thaliana (Atpdf1a) In Complex With Met-Ala-Ser Length = 197 Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 17/169 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R Sbjct: 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60 Query: 58 LVVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V++ P MV +NP + S+ +++ EGCLS+ +RA Sbjct: 61 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V D + + A G A LQHE DHL+G L++D + Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVP 169 >gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S] gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISSGVGLAAPQVGLDLSLFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 60 -ENKMAKPLVFINPLITETSYELNSYKEGCLSIPGVYYDLMRPKTIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNG+LFID+ + I KK+ K ++ R Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKKKLLKPYMKER 160 >gi|303233239|ref|ZP_07319911.1| peptide deformylase [Atopobium vaginae PB189-T1-4] gi|302480629|gb|EFL43717.1| peptide deformylase [Atopobium vaginae PB189-T1-4] Length = 183 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 69/164 (42%), Positives = 89/164 (54%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V FP PIL+ V P++ I SDI L +ML+VMY+TDG GLAA QIG RLVVI Sbjct: 6 AYKEMVCFPSPILQTVCTPVKHITSDIKELAHHMLDVMYATDGCGLAAPQIGETIRLVVI 65 Query: 62 D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D KNP V +NP I+T + EGCLS P V R + + + + + Sbjct: 66 DVDWSSTSAKNPYVLVNPTIVTADGKDRLMPEGCLSYPGIMVGVTRPSHVICEAYNLDGE 125 Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G +A CLQHE DH+NGI DHL L++ K+ Sbjct: 126 CMRYEATGNLMAACLQHECDHINGITIPDHLPPLEKIEKLKEYK 169 >gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1] gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 60 -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|295835488|ref|ZP_06822421.1| peptide deformylase [Streptomyces sp. SPB74] gi|295825514|gb|EFG64289.1| peptide deformylase [Streptomyces sp. SPB74] Length = 221 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 12/159 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V DP+LR + P E + L+ M M G+GLAA QIGV RL V Sbjct: 30 LLPIVAAGDPVLRTPAAPYEGQLPGPLLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAV 89 Query: 61 ----------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + V +NP + +++ EGCLS+P ++A V R A + Sbjct: 90 LEDPATVPEEVRRMRGREPLPYRVLVNPHYAPAGERRALFYEGCLSVPGWQAVVARHAVV 149 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + G A +QHE DHL+G L++D Sbjct: 150 RLRAEDEHGTALDEEVGGWAARIVQHETDHLDGTLYVDR 188 >gi|326790873|ref|YP_004308694.1| peptide deformylase [Clostridium lentocellum DSM 5427] gi|326541637|gb|ADZ83496.1| peptide deformylase [Clostridium lentocellum DSM 5427] Length = 149 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + +LR++S+P++ + + L+D+M E MY +G+G+AA Q+G+L R + Sbjct: 1 MAIR---TEKEEVLRKISKPVKSFDESLWTLLDDMKETMYLAEGVGIAAPQVGLLKRAFI 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + + +EGCLS+P V+R ++ +R D N Sbjct: 58 VDIGEGPVEFVNPEILAVEGEQL------GEEGCLSVPKRYGTVRRPNYVKMRAQDRNGN 111 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 I +A + HE DHL G LF+D Sbjct: 112 VFEIEGKEFMARAMLHEFDHLEGKLFVD 139 >gi|153815688|ref|ZP_01968356.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|317501925|ref|ZP_07960109.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088261|ref|ZP_08337180.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] gi|145846929|gb|EDK23847.1| hypothetical protein RUMTOR_01924 [Ruminococcus torques ATCC 27756] gi|316896605|gb|EFV18692.1| peptide deformylase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408505|gb|EGG87971.1| polypeptide deformylase [Lachnospiraceae bacterium 3_1_46FAA] Length = 166 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + + K+ LI +MLE MY ++G+GLAA Q+GVL R+VV Sbjct: 1 MAIRVIREIGDDILEKQCKAVPKMTLRTKILIGDMLETMYESNGVGLAAPQVGVLKRIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R + VR D N Sbjct: 61 IDVGEGPIVLINPQIIESSGE------QTGEEGCLSVPGKFGIVTRPDRVKVRAFDENMN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA HELDHL+G L+++ Sbjct: 115 EFEMEGEGLLARAFCHELDHLDGKLYVE 142 >gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a] gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805] gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b] gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23] gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26] gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ IE I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIENIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLALFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + S Y+EGCLSIP D+ R + + + D N + I Sbjct: 60 -ENKMARPLVFINPSIIETSYELSSYKEGCLSIPGVYYDLMRPKAVVINFHDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSK 164 LA +QHE+DHLNG+LFID+ +LK ++ M + Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYEEKLKNKLLKPYMRE 159 >gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04] gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 60 -ENRMARPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNGILFID+ + I K+ K ++ R Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 160 >gi|317490610|ref|ZP_07949082.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|316910286|gb|EFV31923.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] Length = 180 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 82/158 (51%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+PIL ++ P + + + L M + MY DG G+AA Q+GV RLVVID Sbjct: 4 IVQSPNPILNQMCDPCDLDDKGLKKLAKQMAKAMYKNDGCGIAAPQLGVTKRLVVIDCDQ 63 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++P+V +NP ++ D V EGCLS P + R F VRY D + + I Sbjct: 64 DEGEQDPIVLVNPVLVDTQGDPIVVGEGCLSCPGISVPIARPPFARVRYFDLDGEEWEIE 123 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 +GLL CLQHELDHL+GI + + R + Sbjct: 124 GEGLLGRCLQHELDHLDGITMFERCDPMTRIEALRDYE 161 >gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135] gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135] Length = 165 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ + I++++ N M+ +M + +G+GLAA Q+G+ + V+ Sbjct: 2 KIVCYPNDLLRIKTKTVLNIDNELRNTAFKMVNLMDAKNGVGLAASQVGLDLSIFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P++FINP I S + +Y+EGCLSIP D+ R I V D N + I Sbjct: 60 -ENAMSKPLIFINPLITETSFELVLYKEGCLSIPGVYYDLLRPKSIIVEAYDENGEFFKI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + GLLA +QHE+DHL G+LFID+ R+ + + K + Sbjct: 119 ESSGLLARIVQHEMDHLKGVLFIDYYEDKLRNNLLRSYMKKRR 161 >gi|15615221|ref|NP_243524.1| peptide deformylase [Bacillus halodurans C-125] gi|17432952|sp|Q9K9I9|DEF_BACHD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus halodurans C-125] Length = 182 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K +V +P+LR V++P+ ++ + MLE G+GLA Sbjct: 3 TMKDIVREGNPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSI---PDYRADVK 105 A QIG+ +++ + D ++ +V NPKII+ S + + + G + + + V Sbjct: 63 APQIGLSKQMIAVHTTDENEKEYSLVLFNPKIISESVEMTHLEGGEGCLSVDREVQGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL----SRLKRD 156 R A ITV+ ++ N + + G A QHE+DHLNGI+F D + KR+ Sbjct: 123 RHARITVKAINENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRIEGWVDPYKRE 177 >gi|326489213|dbj|BAK01590.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 259 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 17/163 (10%) Query: 7 VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 V DP+L ++ + + I ++ID M+ VM G+GLAA QIGV +++V++ Sbjct: 74 VKAGDPVLHEPAQEVSPGDVPSEKIQDIIDQMIAVMRKAPGVGLAAPQIGVPLKIIVLED 133 Query: 64 QDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 + +V INPK+ S + + EGCLS+ YRA V+R Sbjct: 134 TQEYISYVSKEDIDAQDRCPFDLLVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLD 193 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V +D N + + A G A LQHE DHL G L++D + Sbjct: 194 VEVSGLDRNGRPMKVEASGWQARILQHECDHLEGTLYVDKMVP 236 >gi|17433049|sp|Q9FUZ0|DEF1A_SOLLC RecName: Full=Peptide deformylase 1A, chloroplastic; Short=PDF 1A; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like protein [Solanum lycopersicum] Length = 277 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSR--PIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L S+ P+E+I S+ I +I+ M++VM + G+GLAA QIG+ +++V+ Sbjct: 90 DIVKAGDPVLHEPSQDIPLEEIGSERIQKIIEEMVKVMRNAPGVGLAAPQIGIPLKIIVL 149 Query: 62 DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + + P INPK+ + +++ EGCLS+ +RA V+R Sbjct: 150 EDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFFEGCLSVDGFRAVVERH 209 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V +D N + + A G A LQHE DHL+G L++D ++ Sbjct: 210 LEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVDKMAP 254 >gi|225352153|ref|ZP_03743176.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157400|gb|EEG70739.1| hypothetical protein BIFPSEUDO_03768 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 149 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 6/154 (3%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 2 LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNINGKIGYVLNP 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V EGCLS+P +R+ + VR +D + ++ G++ Sbjct: 62 VLEETCGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLEGKTVVLEGRGIMGRM 115 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LQHE DHLNG +++D L + +R + M + Sbjct: 116 LQHETDHLNGHVYLDRLEKEERREAMRYMRNHHK 149 >gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+V+ P +L + + P++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVMHPAEVLEQKAEPVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + R + +NP+++ + + CLS P V+R +++ V+ D + Sbjct: 61 VDIGEEPGR---IDLVNPEVLEIKGSQTDIEG-CLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I A+G LA L HE+DHL+GILF S++ + K+++++ Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158 >gi|255082960|ref|XP_002504466.1| predicted protein [Micromonas sp. RCC299] gi|226519734|gb|ACO65724.1| predicted protein [Micromonas sp. RCC299] Length = 285 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 4 KPLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P+LR+++ I ++I+S I LI M+ +M + +GLAA QIGV YR+ V Sbjct: 65 REIVQAGTPVLRQMAEEIPLDRIDSATIQELIQEMISIMRNRG-VGLAAPQIGVPYRIFV 123 Query: 61 IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + + + + F + A + + VR + Sbjct: 124 MEDTEEGMSDVSKDDLVAQERAPFPAKVIINPTVTPVSNQSCAFFEGCLSVRVRGYGGDG 183 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + A G A QHE+DHL+G+L++D + + Sbjct: 184 KPVDFVAKGWQARIAQHEMDHLDGVLYVDRMDSRTFRRV 222 >gi|15607570|ref|NP_214943.1| peptide deformylase [Mycobacterium tuberculosis H37Rv] gi|15839816|ref|NP_334853.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121636343|ref|YP_976566.1| peptide deformylase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660194|ref|YP_001281717.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148821625|ref|YP_001286379.1| peptide deformylase [Mycobacterium tuberculosis F11] gi|167970754|ref|ZP_02553031.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|215402181|ref|ZP_03414362.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|215409945|ref|ZP_03418753.1| peptide deformylase [Mycobacterium tuberculosis 94_M4241A] gi|215425650|ref|ZP_03423569.1| peptide deformylase [Mycobacterium tuberculosis T92] gi|215429251|ref|ZP_03427170.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|215444525|ref|ZP_03431277.1| peptide deformylase [Mycobacterium tuberculosis T85] gi|218752062|ref|ZP_03530858.1| peptide deformylase [Mycobacterium tuberculosis GM 1503] gi|219556250|ref|ZP_03535326.1| peptide deformylase [Mycobacterium tuberculosis T17] gi|224988815|ref|YP_002643502.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797353|ref|YP_003030354.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|254230779|ref|ZP_04924106.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|254363393|ref|ZP_04979439.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|254549376|ref|ZP_05139823.1| peptide deformylase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185296|ref|ZP_05762770.1| peptide deformylase [Mycobacterium tuberculosis CPHL_A] gi|260199427|ref|ZP_05766918.1| peptide deformylase [Mycobacterium tuberculosis T46] gi|260203579|ref|ZP_05771070.1| peptide deformylase [Mycobacterium tuberculosis K85] gi|289441809|ref|ZP_06431553.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289445969|ref|ZP_06435713.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289552678|ref|ZP_06441888.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289568345|ref|ZP_06448572.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289573014|ref|ZP_06453241.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289744125|ref|ZP_06503503.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289748913|ref|ZP_06508291.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289752458|ref|ZP_06511836.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289756502|ref|ZP_06515880.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|289760545|ref|ZP_06519923.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|294995934|ref|ZP_06801625.1| peptide deformylase [Mycobacterium tuberculosis 210] gi|297632913|ref|ZP_06950693.1| peptide deformylase [Mycobacterium tuberculosis KZN 4207] gi|297729888|ref|ZP_06959006.1| peptide deformylase [Mycobacterium tuberculosis KZN R506] gi|298523906|ref|ZP_07011315.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|306774525|ref|ZP_07412862.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|306779274|ref|ZP_07417611.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|306783063|ref|ZP_07421385.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|306787430|ref|ZP_07425752.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|306791982|ref|ZP_07430284.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|306796169|ref|ZP_07434471.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|306802026|ref|ZP_07438694.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|306806238|ref|ZP_07442906.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|306966434|ref|ZP_07479095.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|306970629|ref|ZP_07483290.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|307078354|ref|ZP_07487524.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|307082913|ref|ZP_07492026.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|313657217|ref|ZP_07814097.1| peptide deformylase [Mycobacterium tuberculosis KZN V2475] gi|6225255|sp|P96275|DEF_MYCTU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512922|sp|A1KFQ1|DEF_MYCBP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158513357|sp|A5TZF5|DEF_MYCTA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767595|sp|C1AKA5|DEF_MYCBT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|221046693|pdb|3E3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Peptide Deformylase In Complex With Inhibitor gi|1817695|emb|CAB06569.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium tuberculosis H37Rv] gi|13879947|gb|AAK44667.1| peptide deformylase [Mycobacterium tuberculosis CDC1551] gi|121491990|emb|CAL70453.1| Probable polypeptide deformylase def [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599838|gb|EAY58848.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis C] gi|134148907|gb|EBA40952.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis str. Haarlem] gi|148504346|gb|ABQ72155.1| peptide deformylase [Mycobacterium tuberculosis H37Ra] gi|148720152|gb|ABR04777.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis F11] gi|224771928|dbj|BAH24734.1| peptide deformylase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318856|gb|ACT23459.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 1435] gi|289414728|gb|EFD11968.1| polypeptide deformylase [Mycobacterium tuberculosis T46] gi|289418927|gb|EFD16128.1| polypeptide deformylase def [Mycobacterium tuberculosis CPHL_A] gi|289437310|gb|EFD19803.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 605] gi|289537445|gb|EFD42023.1| polypeptide deformylase def [Mycobacterium tuberculosis K85] gi|289542098|gb|EFD45747.1| polypeptide deformylase def [Mycobacterium tuberculosis T17] gi|289684653|gb|EFD52141.1| peptide deformylase [Mycobacterium tuberculosis 02_1987] gi|289689500|gb|EFD56929.1| polypeptide deformylase def [Mycobacterium tuberculosis T92] gi|289693045|gb|EFD60474.1| peptide deformylase [Mycobacterium tuberculosis EAS054] gi|289708051|gb|EFD72067.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis GM 1503] gi|289712066|gb|EFD76078.1| polypeptide deformylase def [Mycobacterium tuberculosis T85] gi|298493700|gb|EFI28994.1| polypeptide deformylase def (formylmethionine deformylase) [Mycobacterium tuberculosis 94_M4241A] gi|308216874|gb|EFO76273.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu001] gi|308327718|gb|EFP16569.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu002] gi|308332080|gb|EFP20931.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu003] gi|308335895|gb|EFP24746.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu004] gi|308339472|gb|EFP28323.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu005] gi|308343337|gb|EFP32188.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu006] gi|308347247|gb|EFP36098.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu007] gi|308351177|gb|EFP40028.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu008] gi|308355830|gb|EFP44681.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu009] gi|308359750|gb|EFP48601.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu010] gi|308363691|gb|EFP52542.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu011] gi|308367344|gb|EFP56195.1| polypeptide deformylase def [Mycobacterium tuberculosis SUMu012] gi|323721101|gb|EGB30163.1| polypeptide deformylase def [Mycobacterium tuberculosis CDC1551A] gi|326902255|gb|EGE49188.1| polypeptide deformylase def [Mycobacterium tuberculosis W-148] gi|328457139|gb|AEB02562.1| polypeptide deformylase def [Mycobacterium tuberculosis KZN 4207] Length = 197 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M + M + +G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162 >gi|312131601|ref|YP_003998941.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311908147|gb|ADQ18588.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 190 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 12/163 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P++ + +LR+ + I K D+ + NM E MY+ GIGLA Q+ + YR+ V+ Sbjct: 1 MIYPIIGYGATVLRKKCQDIVKGELDVKQISQNMFETMYAASGIGLAGPQVNLPYRIFVV 60 Query: 62 D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 D D FIN +I+ + + Y+EGCLSIP RADV R Sbjct: 61 DGEIINNSAETEEEIDPDLVGFKKTFINAQILEETGEPWPYEEGCLSIPGIRADVYRKPV 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 IT+RY D + G+ A +QHE DH+ G+LF D+L+ Sbjct: 121 ITIRYFDTDWVEHTESFKGMAARIIQHEYDHIEGVLFTDYLAP 163 >gi|268611639|ref|ZP_06145366.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 153 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ D L +V +P++K + + L+D+M E + G+GLAA QIG+ R+ + Sbjct: 1 MALRKILTDKDESLHKVCKPVDKFDEKLAVLLDDMHETLDKAQGLGLAAPQIGLCRRIFI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + L++ + +T + QEGCLS P+ V R ++ D N Sbjct: 61 MHLEEGSFE------CINPEVTQKEGKQRVQEGCLSCPNVWGYVTRPMKCHLKAQDRNGN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 +GL A C HE DHL+G +F + Sbjct: 115 WFERDFEGLGAQCTCHENDHLDGHVFTE 142 >gi|327441112|dbj|BAK17477.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 163 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P IL + +R +E I+ +I+ L+D++ + M DG+G+AA QI V R+ + Sbjct: 1 MAIKEVVKNPANILSKKTREVEVIDENIIQLLDDLYDTMVENDGVGIAAPQINVDLRVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + + + + EGCLS PD VKR ++ + D + Sbjct: 61 VELGEDILEMINPIVLETRGEEEDV------EGCLSFPDLFGMVKRPTYVKIEASDREGR 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A+ A C+ HE+DHL+G+LF ++R+ Sbjct: 115 IYELEAEDFEARCILHEIDHLDGVLFDSKMTRV 147 >gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group] Length = 326 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 38/205 (18%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST--------------------- 42 +V +PDPILR ++ I + ++ +L D M +VMY+ Sbjct: 97 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYNASDSICVTLLNKQIKKGLLSTI 156 Query: 43 -----------------DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD 85 DGIGL+A Q+GV +L+V + +V +NP + S Sbjct: 157 AREDIPPIEPLVSCYRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSK 216 Query: 86 DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGIL 145 VY+E CLS P A+V R + + D + GL A QHE DHL GIL Sbjct: 217 RLLVYEESCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGIL 276 Query: 146 FIDHLSRLKRDMITKKMSKLVQLRD 170 F D +S + + + + L + + Sbjct: 277 FFDRMSLDVLESVREGLKDLEKKYE 301 >gi|321315338|ref|YP_004207625.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021612|gb|ADV96598.1| peptide deformylase [Bacillus subtilis BSn5] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + + + CLS P DV R+ ++ VR + + Sbjct: 61 VDIGDDRGR---IDLVNPEILEKSGEQTGIEG-CLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|16078635|ref|NP_389454.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309447|ref|ZP_03591294.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313772|ref|ZP_03595577.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318696|ref|ZP_03599990.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322967|ref|ZP_03604261.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|2499922|sp|P94462|DEF1_BACSU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus subtilis subsp. subtilis str. 168] Length = 160 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ D R + +NP+I+ S + + + CLS P+ DV R+ ++ VR + + Sbjct: 61 VEIGDDRGR---IDLVNPEILEKSGEQTGIEG-CLSFPNVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|145220780|ref|YP_001131458.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315442266|ref|YP_004075145.1| peptide deformylase [Mycobacterium sp. Spyr1] gi|189083073|sp|A4T2T4|DEF_MYCGI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145213266|gb|ABP42670.1| peptide deformylase [Mycobacterium gilvum PYR-GCK] gi|315260569|gb|ADT97310.1| peptide deformylase [Mycobacterium sp. Spyr1] Length = 197 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +P+ I DP+L + PI + +D+ +LI ++ + M + G+GLAA QIGV Sbjct: 1 MAVRPICIVGDPVLHTATEPIPVGPDGSLPADLADLITDLYDTMDAAHGVGLAANQIGVN 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D D + ++ D EGCLS+P R+ Sbjct: 61 KRVFVYDCADARKKTVRRRGVVVNPVLETSEVPETMPDPEDDDEGCLSVPGESFPTGRAD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I L A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGTPITIEGTDLFARMLQHETGHLDGFLYLDSL 162 >gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1] gi|254767600|sp|A5US58|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1] Length = 185 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 88/169 (52%), Gaps = 16/169 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P IL P+ N + L+ +M E M++ G+GLAA QIG+ Sbjct: 1 MALRRILRIDNPDDKKILTTRCHPVRLPNPALKQLVADMFETMHAASGVGLAAPQIGITQ 60 Query: 57 RLVVIDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 RL VI + + V INP+II SD V EGCLS+P + +V Sbjct: 61 RLAVISIPPVVEERPDGSKVEVAPEQNFVLINPEIIKASDQEDVGLEGCLSLPGWYGEVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153 R+A++TV Y D N + Q I GLL LQHE+DHL+GILF + + L Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLGRALQHEIDHLDGILFTERIRDL 169 >gi|315640287|ref|ZP_07895404.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315483949|gb|EFU74428.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 163 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P++I PD LR+ ++ I+++ +++ L+D+M E M + DG+G+AA QIG ++ V+ Sbjct: 1 MRYPIIIQPDEQLRKPNQEIQELTDELVYLLDDMYETMLAHDGVGIAAPQIGKNLQMAVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ ++ INP+II + CLSIP V+R+ ITVRY D Sbjct: 61 EVDENDR----FDLINPQIIDRKGKSVFVEG-CLSIPHVFGTVERAEEITVRYYDREGDE 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHL 150 + A G LA +QHE+DHLNG+LF D + Sbjct: 116 MEVTAYGYLARAIQHEIDHLNGVLFTDKV 144 >gi|66047008|ref|YP_236849.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a] gi|63257715|gb|AAY38811.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae B728a] Length = 179 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A + INP I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPEAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 160 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R V Sbjct: 1 MAVKKVVTHPAEVLETPAETVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRAAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D R + +NP+I+ S + + + CLS P DVKR+ ++ VR + + Sbjct: 61 VDIGDDRGR---IDLVNPEILERSGEQTGIEG-CLSFPGVYGDVKRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|296393247|ref|YP_003658131.1| peptide deformylase [Segniliparus rotundus DSM 44985] gi|296180394|gb|ADG97300.1| peptide deformylase [Segniliparus rotundus DSM 44985] Length = 198 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 13/163 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L R + + ++++L+++M + + ++ G+GLAA QIGV Sbjct: 1 MTVLPIRITGDPVLHRPTELVRLTAEGAAPPEVVSLLEDMYDTLKASHGVGLAATQIGVG 60 Query: 56 YRLVVIDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 RL V D D V + D +EGCLS+P R R+ Sbjct: 61 LRLFVYDCPDDTSGKRVSRKGEIINPVLQTSALPEGMPDEDEDEEGCLSVPGLRFPTGRA 120 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +D + I +GL A LQHE+ HL+G L++D L Sbjct: 121 VWAKATGVDRTGKPVEIEGEGLFARMLQHEVGHLDGKLYVDML 163 >gi|169827062|ref|YP_001697220.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991550|gb|ACA39090.1| Peptide deformylase 1 [Lysinibacillus sphaericus C3-41] Length = 176 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K ++ P +L + +IN +++ L+D++ + M DG+G+AA QI + R+ + Sbjct: 13 MAIKKVIEHPAQVLSTPCAEVTEINDELITLLDDLYDTMVEYDGVGIAAPQIDIGLRVAI 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++L + + + +D + EGCLS P +V+R +++ + D + Sbjct: 73 VELGEERDIL----EMINPTVIETDGAEIDIEGCLSFPGLYGEVERPSYVKIEACDREGR 128 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A G A + HE+DHL+G+LF + R+ Sbjct: 129 VYELEAGGFDARAILHEIDHLDGVLFDSKIQRV 161 >gi|149919087|ref|ZP_01907571.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] gi|149820017|gb|EDM79438.1| putative polypeptide deformylase protein [Plesiocystis pacifica SIR-1] Length = 192 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + + P+LR+V+R + +I ID+++ M +G GLAA Q+ Sbjct: 1 MATIRAIARVGAPVLRQVAREVSPEELATPEIQGFIDDLVATMRHANGAGLAANQVFEPI 60 Query: 57 RLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ +++Q + NPK+ DD EGCLS+PD R V+R A + Sbjct: 61 QICALEVQSNPRYPYKPNIPLTVLVNPKLTPLGDDSFANYEGCLSVPDLRGVVRRHARLR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ +D G+ A QHE+DHL G LF+D + Sbjct: 121 VQALDREGNSLDFETAGVTAGTYQHEVDHLRGKLFLDRVED 161 >gi|295839268|ref|ZP_06826201.1| peptide deformylase [Streptomyces sp. SPB74] gi|295827384|gb|EDY42650.2| peptide deformylase [Streptomyces sp. SPB74] Length = 250 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 4/166 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + + IL R + L+ +M MY +G GLAA Q+GV RL V Sbjct: 58 MLR-VTEVGEEILARRCAEATVFGTPGLARLVADMFLTMYLAEGAGLAANQVGVDLRLFV 116 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118 D D ++ +N I + ++ ++ GCLS+P R + R+ +R +D + Sbjct: 117 YDRFDDEGARHVGHVLNRVIDEAASGRALVEDVEGCLSVPGARHGLARADRTVLRGVDRD 176 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + I G A CLQHE DHLNG++++D L + R + M++ Sbjct: 177 GRPVTIEGTGYFARCLQHETDHLNGMVYVDRLGKRARRAVLADMAE 222 >gi|225865956|ref|YP_002751334.1| peptide deformylase [Bacillus cereus 03BB102] gi|229186214|ref|ZP_04313383.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] gi|225789299|gb|ACO29516.1| peptide deformylase [Bacillus cereus 03BB102] gi|228597390|gb|EEK55041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BGSC 6E1] Length = 184 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|224054132|ref|XP_002298107.1| peptide deformylase [Populus trichocarpa] gi|222845365|gb|EEE82912.1| peptide deformylase [Populus trichocarpa] Length = 299 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L +R ++ + I +ID+M++VM G+GLAA QIG+ R++V+ Sbjct: 112 DIVKAGDPVLHEPAREVDPKEIGSERIQKIIDDMVKVMRMAPGVGLAAPQIGIPLRIIVL 171 Query: 62 DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P +NPK+ S+ + + EGCLS+ +RA V+R Sbjct: 172 EDTAEYIGYAPKNETKAQDRRPFDLLVIVNPKLKKKSNRTAFFFEGCLSVDGFRAIVERH 231 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + Q + A G A LQHE DHL G L++D + Sbjct: 232 LDVEVIGLSRDGQPIKVDASGWQARILQHECDHLEGTLYVDKMVP 276 >gi|294632567|ref|ZP_06711127.1| peptide deformylase [Streptomyces sp. e14] gi|292835900|gb|EFF94249.1| peptide deformylase [Streptomyces sp. e14] Length = 215 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ ++ + + M + G+GLAAVQ+GV R+ VI Sbjct: 24 LPIVSAGDPVLRRPAEPYDGQLAPELLARFVQALRVTMRTAPGVGLAAVQVGVGLRIAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPEEVRVARERVPQPFRVLVNPSYEPVGARRAAFFEGCLSVPGWQAVVARHAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R D + + G A +QHE DHL+G+L++D Sbjct: 144 LRARDEHGRAVDEVFTGWPARIVQHETDHLDGVLYVDRAEP 184 >gi|31791607|ref|NP_854100.1| peptide deformylase [Mycobacterium bovis AF2122/97] gi|39930833|sp|Q7U206|DEF_MYCBO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|31617193|emb|CAD93300.1| PROBABLE POLYPEPTIDE DEFORMYLASE DEF (PDF) (FORMYLMETHIONINE DEFORMYLASE) [Mycobacterium bovis AF2122/97] Length = 197 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ D+ LI M + M + +G+GLAA QIG Sbjct: 1 MTVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCS 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRL 162 >gi|291288165|ref|YP_003504981.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] gi|290885325|gb|ADD69025.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809] Length = 167 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + ++++PD L+ ++ +EK++ ++ ++++ M + G+AA QIG R+V Sbjct: 1 MAVREVLVYPDTRLKEMAEDVEKLDDHAKQVVRDLIDTMEESGHSTGIAATQIGEKLRIV 60 Query: 60 VID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V D + + + I + ++EGC+S+PDY +V R+ I ++Y D Sbjct: 61 VADASKNKKCENNHGRLVLINPEILKWEGMLQFREGCMSVPDYTGNVNRARKILIKYNDE 120 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N + ++I A+G A LQHE DHL+G LFID + + D+ +K K Sbjct: 121 NFEEKVIEAEGFEAVLLQHETDHLDGTLFIDRVISKRTDLFRRKKYK 167 >gi|330971091|gb|EGH71157.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 179 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIGV +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + +I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|282877697|ref|ZP_06286512.1| peptide deformylase [Prevotella buccalis ATCC 35310] gi|281300269|gb|EFA92623.1| peptide deformylase [Prevotella buccalis ATCC 35310] Length = 176 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID-------LQDH 66 LR+V++ I + LI +M E + S+DGIGLAA QIG R+VVID ++ Sbjct: 2 LRKVAQDITPEYEGLGQLIQDMFETLDSSDGIGLAAPQIGKSIRVVVIDLNVLSDDFPEY 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + + + I + EGCLSIP V R+ I V+YMD + + Sbjct: 62 KDFRRAYINPHIIEIDENAPKESMDEGCLSIPGIHEAVSRTTRIHVQYMDEDFTPHDEWI 121 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 +G LA +QHE DHL+G +F+D +S ++ MI K+ + Q + Sbjct: 122 EGYLARVMQHEFDHLDGKMFVDRISPFRKQMIKNKLKGMTQGK 164 >gi|118479185|ref|YP_896336.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196045777|ref|ZP_03113006.1| peptide deformylase [Bacillus cereus 03BB108] gi|118418410|gb|ABK86829.1| polypeptide deformylase [Bacillus thuringiensis str. Al Hakam] gi|196023217|gb|EDX61895.1| peptide deformylase [Bacillus cereus 03BB108] Length = 184 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSYALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116] gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116] Length = 165 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I I+ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQINNIDDKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 60 -ENKMARPLVFINPLITETSYELNSYREGCLSIPGVYYDLMRPKAIVVSFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNG+LFID+ + I K+ K ++ R Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKNKLLKPYMRER 160 >gi|52141515|ref|YP_085313.1| peptide deformylase [Bacillus cereus E33L] gi|51974984|gb|AAU16534.1| polypeptide deformylase [Bacillus cereus E33L] Length = 184 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR+V+ + ++ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRKVAEEVVIPASKEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|114564402|ref|YP_751916.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] gi|114335695|gb|ABI73077.1| peptide deformylase [Shewanella frigidimarina NCIMB 400] Length = 170 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 + + IL +++ P+ + + L DNML M + +G+G+AA Q+ + ++ Sbjct: 6 LLSIATTGEQILTQIAEPVTVFDDALHTLADNMLSTMLNANGVGIAATQVFSNAAMFIMA 65 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P V INP+I++ S EGCLSIP R + R + I V+Y Sbjct: 66 SNPNERYPDAPSMPPTVVINPQILSASAATEADVEGCLSIPGQRLSIARHSEIEVQYQSL 125 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Q G +A QHE DHL GI ++ ++ Sbjct: 126 DGQLHQQTLTGFVARIFQHEYDHLQGITLLERVN 159 >gi|167760430|ref|ZP_02432557.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] gi|167661929|gb|EDS06059.1| hypothetical protein CLOSCI_02804 [Clostridium scindens ATCC 35704] Length = 165 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + + + KI LI++ML+ MY G+GLAA Q+GVL R+VV Sbjct: 9 MATRKIREIGDEVLTKPCKEVTKITLRTKVLINDMLDTMYEALGVGLAAPQVGVLKRIVV 68 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R ++ VR ++ + + Sbjct: 69 IDVGEGPIVLINPEIIETSGE------QSGEEGCLSVPGKSGMVTRPDYVKVRALNEDME 122 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + +GLLA HE+DHL+G +++D Sbjct: 123 EIELEGEGLLARAFCHEIDHLDGRMYVD 150 >gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr] gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr] Length = 165 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ L V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDSIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSLFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP II S + + Y+EGCLSIP D+ R I V + D N + I Sbjct: 60 -ENRMAKPLVFINPSIIETSYELNSYREGCLSIPGVYYDLMRPKGIVVNFYDENGKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNGILFID+ + I K+ K ++ R Sbjct: 119 EDSDFLARIIQHEMDHLNGILFIDYYE----ERIKNKLLKPYMRER 160 >gi|297583895|ref|YP_003699675.1| peptide deformylase [Bacillus selenitireducens MLS10] gi|297142352|gb|ADH99109.1| peptide deformylase [Bacillus selenitireducens MLS10] Length = 194 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V P LR+ + + ++ + +++M+ E G+GLAA Q Sbjct: 6 DIVREGHPALRKPAEEVPVPLSEEDRQTLEDMMQFLRNSQDPETAETYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 I V + V+ + M F+NPKII+ S + + + V R + Sbjct: 66 INVSKNMFVVRFAEEDEEPIEMTFVNPKIISHSAETTHLPDGEGCLSVDRSVEGTVPRYS 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V D N I G A QHE DHLNGI+F D + Sbjct: 126 RVKVEATDENGHSFTIRLRGFFAIVFQHEFDHLNGIMFYDRID 168 >gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032] Length = 160 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 93/165 (56%), Gaps = 7/165 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KP+VI P +L + + ++ + + L+D+M + M DG+GLAA QIG+ R+ V Sbjct: 1 MAVKPIVIHPAEVLEQKAESVDTFDKKLKKLLDDMYDTMLELDGVGLAAPQIGISQRIAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + + R + +NP+++ + + CLS P V+R +++ V+ D + Sbjct: 61 VDIGEESGR---IDLVNPEVLEVKGSQTDIEG-CLSFPSLYGTVERPSYVKVKAFDKKGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 I A+G LA L HE+DHL+GILF S++ + K+++++ Sbjct: 117 PFTIEAEGFLARALLHEIDHLDGILFT---SKIIQTYTEKELAEM 158 >gi|284052203|ref|ZP_06382413.1| peptide deformylase [Arthrospira platensis str. Paraca] gi|291566279|dbj|BAI88551.1| peptide deformylase [Arthrospira platensis NIES-39] Length = 177 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + DP+LR ++P+ I I +LID+++ + +G+G+AA Q+G R+ Sbjct: 1 MADILAVTQLGDPVLRDHAQPVANIWEPRIQSLIDDLMATVIEKNGVGIAAPQVGYSDRI 60 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +VI A P INPKII SD+ EGCLS+P R V R I V Sbjct: 61 LVIASRPSIRYPAAPEMEPTAMINPKIIGKSDEMVADWEGCLSVPGIRGIVNRYQAIEVE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 Y + + G +A QHE DHL GI+F+D ++ M + K Sbjct: 121 YTSRDGHLEHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQK 171 >gi|253996543|ref|YP_003048607.1| peptide deformylase [Methylotenera mobilis JLW8] gi|253983222|gb|ACT48080.1| peptide deformylase [Methylotenera mobilis JLW8] Length = 181 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 10/164 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ +P L + P+ + N +++ LI ++ + M +G G+AA QIGV R+V Sbjct: 1 MAIGAVLRMGEPCLLAKAEPVAQFNTAELHQLIQDLEDTMQHMNGAGIAAPQIGVSLRVV 60 Query: 60 VI---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + A V INPK+ D EGCLS+P R V R + Sbjct: 61 IFGQKEPAAVNPRYPDADAVPYTVLINPKLTLIGDKIENDWEGCLSVPGMRGIVPRHLKL 120 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D G A +QHE DHL+G+L+ + LK Sbjct: 121 HYTGFDQYGNKVDRLVSGFHARVVQHECDHLDGVLYPMRIRDLK 164 >gi|330880564|gb|EGH14713.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 169 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 11/170 (6%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + PD P+LR+VS ++K ++ ++ L+D+M E M +G+GLAA QIGV R++ Sbjct: 1 MIRAFLP-PDAPLLRKVSAQVDKFSNGELRTLVDDMFETMRDGNGVGLAAPQIGVDARII 59 Query: 60 VIDLQDHAHR-----KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 VI+ + R P + +IT + +EGC S+P V R A I Sbjct: 60 VIEFSGNEERAPGESPVPPTVLINPVITSGVGRTEGREGCFSVPGKIGIVPRYATIEYTA 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL---KRDMITKK 161 D + + A+G A +QHE+DHLNGIL+ID S + +R+ I K Sbjct: 120 QDMDGLNVRGKAEGFHARIIQHEVDHLNGILYIDIASEVSLYQREPIASK 169 >gi|313892009|ref|ZP_07825610.1| peptide deformylase [Dialister microaerophilus UPII 345-E] gi|313119652|gb|EFR42843.1| peptide deformylase [Dialister microaerophilus UPII 345-E] Length = 153 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +LR V++P+ + + + +LI +M + MY+ +G+GLAA QIG+ R+ V Sbjct: 3 EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D D INP+ D + EGCLS+ D +V+R A + V+Y D + Sbjct: 63 ADCNDGFDVY-----INPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A GL A C+QHE+DHLNG LFID L + Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153 >gi|302187708|ref|ZP_07264381.1| peptide deformylase [Pseudomonas syringae pv. syringae 642] gi|330896888|gb|EGH28478.1| peptide deformylase [Pseudomonas syringae pv. japonica str. M301072PT] gi|330942465|gb|EGH45062.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B] gi|330977866|gb|EGH77769.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 179 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + +I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|118617060|ref|YP_905392.1| peptide deformylase [Mycobacterium ulcerans Agy99] gi|158512383|sp|A0PNK2|DEF_MYCUA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118569170|gb|ABL03921.1| polypeptide deformylase Def [Mycobacterium ulcerans Agy99] Length = 197 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D D + +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCADDRRKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + GL A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVK 175 >gi|153955363|ref|YP_001396128.1| Def3 [Clostridium kluyveri DSM 555] gi|219855782|ref|YP_002472904.1| hypothetical protein CKR_2439 [Clostridium kluyveri NBRC 12016] gi|146348221|gb|EDK34757.1| Def3 [Clostridium kluyveri DSM 555] gi|219569506|dbj|BAH07490.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 150 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + +F D ILR+ S+ ++ +++ I ++++M + MY +G GLAA QIG+L RL Sbjct: 1 MALRQIRLFGDDILRKKSKEVKAVDNKIRQILNDMADTMYDTENGGGLAAPQIGILKRLA 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + I EGCLSIP+ +KR A + + ++ Sbjct: 61 VIDMGQGLIKLV------NPKIIKCAGEQEVIEGCLSIPNVFGKLKRPAKVIIEALNEEG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I+ LA C HE+DHL GILF D ++ Sbjct: 115 SKIILKGTKDLAKCFCHEIDHLKGILFTDLVT 146 >gi|240168904|ref|ZP_04747563.1| peptide deformylase [Mycobacterium kansasii ATCC 12478] Length = 197 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L ++PI + +D+ LI +M + M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTKPIPVGADGSLPADLPQLITDMYDTMDAAYGVGLAANQIGHG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D + + +I D +EGCLS+P R+ Sbjct: 61 LRVFVYDCAEDRGKTARRRGVVINPVLETSEIPETMPDPDNDEEGCLSVPGESFPTGRAK 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V + + I GL A LQHE HL+G L++D L Sbjct: 121 WARVTGLGADGAPVDIEGTGLFARMLQHETGHLDGFLYLDCL 162 >gi|30022062|ref|NP_833693.1| peptide deformylase [Bacillus cereus ATCC 14579] gi|228941135|ref|ZP_04103690.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954250|ref|ZP_04116277.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228974067|ref|ZP_04134639.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229047661|ref|ZP_04193247.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|229071475|ref|ZP_04204696.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|229111445|ref|ZP_04240996.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|229129252|ref|ZP_04258224.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|229152174|ref|ZP_04280367.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|229192182|ref|ZP_04319149.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|296504467|ref|YP_003666167.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|39931053|sp|Q819K2|DEF2_BACCR RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus ATCC 14579] gi|228591293|gb|EEK49145.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 10876] gi|228631136|gb|EEK87772.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550] gi|228654178|gb|EEL10044.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-Cer4] gi|228671827|gb|EEL27120.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-15] gi|228711645|gb|EEL63599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F65185] gi|228723682|gb|EEL75041.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676] gi|228785644|gb|EEM33651.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228805378|gb|EEM51970.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818529|gb|EEM64599.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|296325519|gb|ADH08447.1| peptide deformylase [Bacillus thuringiensis BMB171] gi|326941747|gb|AEA17643.1| peptide deformylase [Bacillus thuringiensis serovar chinensis CT-43] Length = 184 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|228909800|ref|ZP_04073623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] gi|228850089|gb|EEM94920.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 200] Length = 184 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|183980768|ref|YP_001849059.1| polypeptide deformylase Def [Mycobacterium marinum M] gi|238690954|sp|B2HQN4|DEF_MYCMM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183174094|gb|ACC39204.1| polypeptide deformylase Def [Mycobacterium marinum M] Length = 197 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P+ + +D+ LI M E M + G+GLAA QIG Sbjct: 1 MAVVPIRIVGDPVLHTPTSPVPVGADGSLPADLPELIATMYETMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHRKNPMV-------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 RL V D D + +I D EGCLS+P R+ Sbjct: 61 LRLFVYDCADDRGKAAHRRGVVINPVLETSEIPENMPDPDNDDEGCLSVPGESFPTGRAT 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + GL A LQHE HL+G L++D L + + Sbjct: 121 WARVTGLDAEGNPVELEGSGLFARMLQHETGHLDGYLYLDCLIGRHARSAKRAVK 175 >gi|30264046|ref|NP_846423.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47529482|ref|YP_020831.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49186882|ref|YP_030134.1| peptide deformylase [Bacillus anthracis str. Sterne] gi|49478480|ref|YP_038035.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321366|ref|ZP_00394325.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis str. A2012] gi|165872897|ref|ZP_02217522.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167633479|ref|ZP_02391803.1| peptide deformylase [Bacillus anthracis str. A0442] gi|167639508|ref|ZP_02397779.1| peptide deformylase [Bacillus anthracis str. A0193] gi|170687132|ref|ZP_02878350.1| peptide deformylase [Bacillus anthracis str. A0465] gi|170705828|ref|ZP_02896291.1| peptide deformylase [Bacillus anthracis str. A0389] gi|177655203|ref|ZP_02936812.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190566155|ref|ZP_03019074.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|196035869|ref|ZP_03103271.1| peptide deformylase [Bacillus cereus W] gi|196038641|ref|ZP_03105949.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218905105|ref|YP_002452939.1| peptide deformylase [Bacillus cereus AH820] gi|227816748|ref|YP_002816757.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228916611|ref|ZP_04080177.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935289|ref|ZP_04098115.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947693|ref|ZP_04109983.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093023|ref|ZP_04224154.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|229603739|ref|YP_002868274.1| peptide deformylase [Bacillus anthracis str. A0248] gi|254683741|ref|ZP_05147601.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066] gi|254721576|ref|ZP_05183365.1| peptide deformylase [Bacillus anthracis str. A1055] gi|254736086|ref|ZP_05193792.1| peptide deformylase [Bacillus anthracis str. Western North America USA6153] gi|254743977|ref|ZP_05201660.1| peptide deformylase [Bacillus anthracis str. Kruger B] gi|254754244|ref|ZP_05206279.1| peptide deformylase [Bacillus anthracis str. Vollum] gi|254758065|ref|ZP_05210092.1| peptide deformylase [Bacillus anthracis str. Australia 94] gi|301055465|ref|YP_003793676.1| peptide deformylase [Bacillus anthracis CI] gi|39931064|sp|Q81MQ9|DEF2_BACAN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|30258691|gb|AAP27909.1| peptide deformylase [Bacillus anthracis str. Ames] gi|47504630|gb|AAT33306.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor'] gi|49180809|gb|AAT56185.1| polypeptide deformylase [Bacillus anthracis str. Sterne] gi|49330036|gb|AAT60682.1| polypeptide deformylase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711384|gb|EDR16936.1| peptide deformylase [Bacillus anthracis str. A0488] gi|167512567|gb|EDR87942.1| peptide deformylase [Bacillus anthracis str. A0193] gi|167530885|gb|EDR93572.1| peptide deformylase [Bacillus anthracis str. A0442] gi|170129368|gb|EDS98232.1| peptide deformylase [Bacillus anthracis str. A0389] gi|170668749|gb|EDT19494.1| peptide deformylase [Bacillus anthracis str. A0465] gi|172080253|gb|EDT65344.1| peptide deformylase [Bacillus anthracis str. A0174] gi|190563074|gb|EDV17040.1| peptide deformylase [Bacillus anthracis Tsiankovskii-I] gi|195991518|gb|EDX55484.1| peptide deformylase [Bacillus cereus W] gi|196030364|gb|EDX68963.1| peptide deformylase [Bacillus cereus NVH0597-99] gi|218537238|gb|ACK89636.1| peptide deformylase [Bacillus cereus AH820] gi|227006107|gb|ACP15850.1| peptide deformylase [Bacillus anthracis str. CDC 684] gi|228690394|gb|EEL44180.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-42] gi|228812213|gb|EEM58544.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824454|gb|EEM70260.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843190|gb|EEM88272.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268147|gb|ACQ49784.1| peptide deformylase [Bacillus anthracis str. A0248] gi|300377634|gb|ADK06538.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI] Length = 184 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|296331148|ref|ZP_06873622.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674303|ref|YP_003865975.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296151792|gb|EFG92667.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412547|gb|ADM37666.1| peptide deformylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 160 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K +V P +L + + + + L+D+M + M DG+GLAA QIG+L R+ V Sbjct: 1 MAVKKVVTHPAEVLETPTESVTVFDKKLKKLLDDMYDTMLEMDGVGLAAPQIGILKRVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D++ R + +NP+I+ S + + + CLS P DV R+ ++ VR + + Sbjct: 61 VDIGDNSGR---IDLVNPEILEKSGEQTGIEG-CLSFPGVYGDVTRADYVKVRAFNRQGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I+ A G LA +QHE+DHL+G+LF +S+ Sbjct: 117 PFILEARGFLARAVQHEMDHLDGVLFTSKISK 148 >gi|50084241|ref|YP_045751.1| peptide deformylase 2 [Acinetobacter sp. ADP1] gi|49530217|emb|CAG67929.1| peptide deformylase 2 [Acinetobacter sp. ADP1] Length = 160 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 8/157 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEK--INSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + IL+ + P+ + +S+ + L+ M M +G+G+AA QI V R+ Sbjct: 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +++ A P+V INP+I FS + + +EGCLS+PD R V+R+ I VR Sbjct: 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y Q G A +QHE+DHLNG+LF+D L Sbjct: 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159 >gi|212715793|ref|ZP_03323921.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] gi|212661160|gb|EEB21735.1| hypothetical protein BIFCAT_00694 [Bifidobacterium catenulatum DSM 16992] Length = 149 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 LR PI++I + +L+ ++L+ + GL+A QIGV R ++ Sbjct: 2 LRTPCDPIKEITPAVRHLVQDLLDTVDDPGRAGLSANQIGVGLRAFSYNIDGKIGYVLNP 61 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V EGCLS+P +R+ + VR +D + + ++ G++ Sbjct: 62 VLEETSGE------QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKTVVLEGHGIMGRM 115 Query: 134 LQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LQHE DHL+G +++D L + +R + M + Sbjct: 116 LQHETDHLDGHVYLDRLEKEERREAMRYMRNHRK 149 >gi|229180249|ref|ZP_04307593.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] gi|228603458|gb|EEK60935.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 172560W] Length = 184 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|42783070|ref|NP_980317.1| peptide deformylase [Bacillus cereus ATCC 10987] gi|206978074|ref|ZP_03238958.1| peptide deformylase [Bacillus cereus H3081.97] gi|217961461|ref|YP_002340029.1| peptide deformylase [Bacillus cereus AH187] gi|222097423|ref|YP_002531480.1| peptide deformylase [Bacillus cereus Q1] gi|229140704|ref|ZP_04269252.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|229198091|ref|ZP_04324802.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|42738998|gb|AAS42925.1| polypeptide deformylase [Bacillus cereus ATCC 10987] gi|206743701|gb|EDZ55124.1| peptide deformylase [Bacillus cereus H3081.97] gi|217068218|gb|ACJ82468.1| peptide deformylase [Bacillus cereus AH187] gi|221241481|gb|ACM14191.1| polypeptide deformylase [Bacillus cereus Q1] gi|228585389|gb|EEK43496.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293] gi|228642776|gb|EEK99059.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST26] gi|324327875|gb|ADY23135.1| peptide deformylase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 184 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVLPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ R++ + + D NPKII+ + + V Sbjct: 63 APQIGISKRMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|229104578|ref|ZP_04235242.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] gi|228678825|gb|EEL33038.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-28] Length = 184 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whipplei TW08/27] gi|39930875|sp|Q83HQ3|DEF_TROW8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma whipplei TW08/27] Length = 201 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 9 ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 67 Query: 63 LQDHAHRKNPMVFINPKIITF---------------SDDFSVYQEGCLSIPDYRADVKRS 107 + + +I + +EGCLS P Y+ ++R+ Sbjct: 68 YTEGDTLHQGVAINPDLLIPKGVPKRQTHKQQANNSTSCDEPDREGCLSFPGYQFPLERA 127 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +T+ D N + ++A G LA QHE DHL G L++D L Sbjct: 128 PQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 170 >gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] gi|39930873|sp|Q83GH8|DEF_TROWT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma whipplei str. Twist] Length = 228 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+ I +L ++P+ S I ++ +M M++ G+GLA QIG+ R+ V Sbjct: 36 ILPIYITGHAVLHAPAKPVTDF-SGIQEIVRDMFATMFAAPGVGLAGPQIGLGLRIFVYS 94 Query: 63 LQDHAHRKNPMVFINPKIITF---------------SDDFSVYQEGCLSIPDYRADVKRS 107 + + +I + +EGCLS P Y+ ++R+ Sbjct: 95 YTEGDTLHQGVAINPDLLIPKGVPKRQTNKQQANNSTSCDEPDREGCLSFPGYQFPLERA 154 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +T+ D N + ++A G LA QHE DHL G L++D L Sbjct: 155 PQVTLSAFDENKKPFTVHATGWLARIFQHEFDHLQGTLYVDRL 197 >gi|284031698|ref|YP_003381629.1| peptide deformylase [Kribbella flavida DSM 17836] gi|283810991|gb|ADB32830.1| Peptide deformylase [Kribbella flavida DSM 17836] Length = 240 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 14/166 (8%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60 P+V DP+LRR + P + + + + + ++ + M + G+GLAA Q+GV R+ V Sbjct: 51 PIVQLGDPVLRRKAEPFDGQFDDGLLKDFVELLRRTMLAAPGVGLAAPQVGVPLRIAVLE 110 Query: 61 --------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + +NP+ D + EGCLS+P + V R + Sbjct: 111 DPATVSAEVAEARERYPLEFLAVLNPEYAPRGRDKRGFYEGCLSMPGFTGVVSRPLKVDA 170 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Y D + + G A QHE DHLNG L++D + R M Sbjct: 171 GYSDLTGARRRLTLSGWQARIFQHETDHLNGRLYVDQVEP--RSMA 214 >gi|149911294|ref|ZP_01899915.1| peptide deformylase [Moritella sp. PE36] gi|149805609|gb|EDM65611.1| peptide deformylase [Moritella sp. PE36] Length = 168 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 5/154 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ P+ L + + + S + LID+ML+ MY DGIGLA+ Q+G +V Sbjct: 1 MAVLTILTAPNKKLEIPAEKVADV-STVQTLIDDMLDTMYKTDDGIGLASTQVGRKEAVV 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + + PMV INP ++ + S + CLSIP Y ADV+R + V +D Sbjct: 60 VIDISEGRNE--PMVLINPVVVEGENKESGQEG-CLSIPGYYADVERFTKVKVTALDREG 116 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I DG LA +QHE+DHL G LFID+LS L Sbjct: 117 NEIEINDDGFLAIAMQHEIDHLKGTLFIDYLSPL 150 >gi|83592380|ref|YP_426132.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170] gi|83575294|gb|ABC21845.1| Peptide deformylase [Rhodospirillum rubrum ATCC 11170] Length = 169 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 7/166 (4%) Query: 12 PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRK 70 P+L ++RP+E + I L+ +M+E + + G+GLAA Q+ V R+++ + + + Sbjct: 2 PVLAGIARPVEDPTDPKIHRLVADMIETLADSGGVGLAAPQVHVPLRVMIFHVPANRSTE 61 Query: 71 NP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 V INP++ ++ EGCLS+P V R + R +D + + Sbjct: 62 AEGAVPLTVLINPQLTPLGEEMVEDWEGCLSLPGLTGLVPRYRSLRYRGVDLDGREVERE 121 Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170 A A +QHE DHL+G+L+ L + +++ K L R+ Sbjct: 122 ARDFHARVVQHEYDHLDGVLYPRRLRDPSQFGFVEEIRKALAANRE 167 >gi|206895565|ref|YP_002246726.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] gi|206738182|gb|ACI17260.1| peptide deformylase [Coprothermobacter proteolyticus DSM 5265] Length = 171 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRLVVID 62 + + PD +LR ++ ++ + ++++M +M + G+GLAA Q+G+ R VVID Sbjct: 2 DIRVIPDKMLRAKAQKVKSFTEEDRRIVEDMFRLMKENEVEGVGLAAPQVGISKRFVVID 61 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 L + INP+ + EGCLS+P V+R I V + + + Sbjct: 62 LDEFHEV-----LINPRWEPLGKEKEEDIEGCLSVPGVYGPVERFKKIKVSFTNLYGEKI 116 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + DG+L+ +QHE+DHL+G+LFID ++ R + Sbjct: 117 TLKLDGMLSRVVQHEVDHLDGVLFIDKITDWDRIEVM 153 >gi|329120996|ref|ZP_08249627.1| peptide deformylase [Dialister micraerophilus DSM 19965] gi|327471158|gb|EGF16612.1| peptide deformylase [Dialister micraerophilus DSM 19965] Length = 153 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 9/156 (5%) Query: 5 PLVIFPDPILRRVSRPIEKI----NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +LR V++P+ + + + +LI +M + MY+ +G+GLAA QIG+ R+ V Sbjct: 3 EVVKVGKAVLREVAKPVTEEEFLQHKKMKHLIADMKKTMYAENGVGLAAPQIGLSKRIFV 62 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D + INP+ D + EGCLS+ D +V+R A + V+Y D + Sbjct: 63 ADCNEGFDVY-----INPEWEPLDDSKVIETEGCLSVSDLYGEVERYAHVIVKYQDIRGK 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + A GL A C+QHE+DHLNG LFID L + Sbjct: 118 RKQKKATGLFARCVQHEIDHLNGTLFIDKAITLNKR 153 >gi|15828039|ref|NP_302302.1| peptide deformylase [Mycobacterium leprae TN] gi|221230516|ref|YP_002503932.1| peptide deformylase [Mycobacterium leprae Br4923] gi|17432941|sp|Q9CBI2|DEF_MYCLE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767596|sp|B8ZSF6|DEF_MYCLB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13093592|emb|CAC30884.1| polypeptide deformylase [Mycobacterium leprae] gi|219933623|emb|CAR72026.1| polypeptide deformylase [Mycobacterium leprae Br4923] Length = 197 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 12/175 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-----DIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M P+ I DP+L + P++ ++ LI M + M + G+GLAA QIG Sbjct: 1 MAIAPIRIVGDPVLHTPTAPVQVAADGSLPANLNGLISTMYDTMDAAHGVGLAANQIGYG 60 Query: 56 YRLVVIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 R+ V D + + + +I D EGCLS+P + R+ Sbjct: 61 LRVFVYDCAEDCRQTARRRGVVINPILETSEIPETMPDPDTDNEGCLSVPGESFPIGRAQ 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + V +D + GL A LQHE HL+G L++D+L + + Sbjct: 121 WARVTGLDADGNPVTTEGTGLFARMLQHETGHLDGFLYLDYLIGRHARSAKRAIK 175 >gi|218231086|ref|YP_002368775.1| peptide deformylase [Bacillus cereus B4264] gi|218159043|gb|ACK59035.1| peptide deformylase [Bacillus cereus B4264] Length = 184 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|229174643|ref|ZP_04302171.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] gi|228608845|gb|EEK66139.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus MM3] Length = 184 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSIPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|330949875|gb|EGH50135.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 179 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 8/166 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHNILKMGDERLLRIAPPVPADMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ + + +I S EGCLS+P R V R I Sbjct: 61 VIFGFERNERYPQAEAVPQTILINPLITPLSPTLEEGWEGCLSVPGLRGMVDRYQSIRYE 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D Q + A G A +QHE DHL G L+ ++ + Sbjct: 121 GFDPQGQPIVRVAHGFHARVVQHECDHLIGRLYPSRITDFSKFGFM 166 >gi|228922725|ref|ZP_04086023.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228960236|ref|ZP_04121893.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980660|ref|ZP_04140967.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|229081226|ref|ZP_04213735.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|229146546|ref|ZP_04274916.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228636908|gb|EEK93368.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST24] gi|228702088|gb|EEL54565.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock4-2] gi|228779064|gb|EEM27324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis Bt407] gi|228799504|gb|EEM46464.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|228836780|gb|EEM82123.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 1 MKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106 QIGV +++ + + D NPKII+ + + V R Sbjct: 61 PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|47565850|ref|ZP_00236889.1| polypeptide deformylase [Bacillus cereus G9241] gi|47557130|gb|EAL15459.1| polypeptide deformylase [Bacillus cereus G9241] Length = 184 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|228929021|ref|ZP_04092053.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229123495|ref|ZP_04252694.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228659982|gb|EEL15623.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus 95/8201] gi|228830828|gb|EEM76433.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 1 MKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106 QIG+ +++ + + D NPKII+ + + V R Sbjct: 61 PQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|165760871|pdb|2OKL|A Chain A, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus gi|165760872|pdb|2OKL|B Chain B, Crystal Structure Of Peptide Deformylase 2 With Actinonin From Bacillus Cereus Length = 185 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 4 TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 63 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 64 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 124 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 171 >gi|206971224|ref|ZP_03232175.1| peptide deformylase [Bacillus cereus AH1134] gi|206733996|gb|EDZ51167.1| peptide deformylase [Bacillus cereus AH1134] Length = 184 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ +PILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGNPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|218899130|ref|YP_002447541.1| peptide deformylase [Bacillus cereus G9842] gi|228902480|ref|ZP_04066634.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] gi|228966997|ref|ZP_04128035.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|218546057|gb|ACK98451.1| peptide deformylase [Bacillus cereus G9842] gi|228792731|gb|EEM40295.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228857224|gb|EEN01730.1| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensis IBL 4222] Length = 184 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|124485039|ref|YP_001029655.1| peptide deformylase [Methanocorpusculum labreanum Z] gi|124362580|gb|ABN06388.1| peptide deformylase [Methanocorpusculum labreanum Z] Length = 157 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 6/163 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + DP+L + ++ I + ++ NM + M IGL+A QIGV RL ++ Sbjct: 1 MICEIRKYGDPVLFLHAETVQNIGPLELEILTNMWDTMIHNKCIGLSAPQIGVSKRLFIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + + + EG IP + V+R IT RY+D + + Sbjct: 61 NAGGVTIKGANPEVLKEGAL------VEEMEGSPCIPGIQRPVRRPGKITCRYLDISGET 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 G+ A HE DH GIL++DHL +++ MI K + K Sbjct: 115 IETELKGIAARAFLHEKDHHEGILYLDHLKPIQKRMILKSLEK 157 >gi|262373169|ref|ZP_06066448.1| polypeptide deformylase [Acinetobacter junii SH205] gi|262313194|gb|EEY94279.1| polypeptide deformylase [Acinetobacter junii SH205] Length = 161 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 9/160 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ + + + NS+ ++ L M M +GIG+AA Q+ + Sbjct: 1 MSVILPVAQRGEEILKIKAALVSDAEFNSEWLLQLASAMHATMLERNGIGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQATCLGEEGCLSVPDERGQVQRAQSVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 VRY + DG A +QHE+DHL+G+LF++ LS Sbjct: 121 VRYHTLQGEVIETTFDGFPARIVQHEVDHLDGVLFVERLS 160 >gi|229117467|ref|ZP_04246841.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] gi|228665972|gb|EEL21440.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1-3] Length = 181 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49 K ++ DPILR V+ + EK + + +I+ M E GIGLAA Sbjct: 1 MKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106 QIGV +++ + + D NPKII+ + + V R Sbjct: 61 PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|308177432|ref|YP_003916838.1| peptide deformylase [Arthrobacter arilaitensis Re117] gi|307744895|emb|CBT75867.1| peptide deformylase [Arthrobacter arilaitensis Re117] Length = 213 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V P+LR+ + E + L++ M + MY G+GLAA Q+G+ ++ V Sbjct: 26 VLPIVQLGHPVLRQQAVAYENQLPTDLLEELLEAMRQTMYDAPGVGLAAPQVGIPLQIAV 85 Query: 61 IDL----------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ NP+ ++ S+ +V+ EGCLS ++ V R A I Sbjct: 86 LEDLYPIPEEAATMREREPLEYFEIFNPEYVSASEREAVFYEGCLSFDGFQGVVTRPADI 145 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + Y D + Q G A +QHE DHL+G ++ID R +I + Sbjct: 146 SATYKDRDGQEITRSFSGWQARIVQHEADHLSGTVYIDKAE--TRSLIDE 193 >gi|194741016|ref|XP_001952985.1| GF17444 [Drosophila ananassae] gi|190626044|gb|EDV41568.1| GF17444 [Drosophila ananassae] Length = 238 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + P+ + ++ ++ +++ M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQKAAPVPQEHILSPEVEAIVEKMVRVLRKYDCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + +T + EGC+S+ + ADV+R + Sbjct: 113 GSIRKELPEAVYQARQMTELPLTVFINPVLTVTNYTKLKHPEGCMSVRGFSADVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ + N + G A QHE+DHL+G L+ DH+ R Sbjct: 173 SISGSNGNGVQNELELSGWNARIAQHEMDHLDGKLYTDHMDR 214 >gi|87162608|gb|ABD28403.1| Formylmethionine deformylase [Medicago truncatula] Length = 257 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP++ +R ++ + I N+ID+M+ VM G+G+AA QIG+ R++V++ Sbjct: 70 IVKAGDPVIHEPAREVDHSEIKSDKIQNIIDDMILVMRKAPGVGVAAPQIGIPLRIIVLE 129 Query: 63 LQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 ++ N +NPK+ S+ + + EGCLS+ ++A V+R Sbjct: 130 DKEEFICYNTEEETKAQDRRPFDLLVILNPKLKNKSNRTAFFFEGCLSVDRFQALVERYL 189 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 190 DVEVTGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVP 233 >gi|197302409|ref|ZP_03167465.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] gi|197298530|gb|EDY33074.1| hypothetical protein RUMLAC_01137 [Ruminococcus lactaris ATCC 29176] Length = 159 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D IL + + ++K+ LI +ML+ MY G+GLAA Q+G+L ++VV Sbjct: 1 MAIREVRKIGDEILGKQCKEVKKMTIRTKILIGDMLDTMYEKMGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R ++ VR ++ + Sbjct: 61 IDVGEGPIVLINPEIIETSGE------QTGEEGCLSVPGKWGIVTRPNYVKVRALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I +GLLA HE+DHL+G L++D + Sbjct: 115 EFEIEGEGLLARAFCHEIDHLSGHLYVDKVED 146 >gi|254422211|ref|ZP_05035929.1| peptide deformylase [Synechococcus sp. PCC 7335] gi|196189700|gb|EDX84664.1| peptide deformylase [Synechococcus sp. PCC 7335] Length = 176 Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + DP+LR + + + + LID ++ + +G+G+AA Q+ +L Sbjct: 1 MTKILKIAELGDPVLRSPADKVCDVHTPAVQTLIDQLISLTLERNGVGIAAPQVSHSLQL 60 Query: 59 VVIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ + + + P INP+I+ +SD + EGCLS+P R VKRS I V Sbjct: 61 FIVASRPNLRYLHAPKMDPTAMINPQILHYSDAVTAGWEGCLSVPGMRGLVKRSKEIEVS 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 Y D Q Q +A +QHE DH+NG +F+D + + Sbjct: 121 YTDRYGQQQQQIFTDFVARIIQHEYDHINGKVFLDRIDSV 160 >gi|242373503|ref|ZP_04819077.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242348866|gb|EES40468.1| possible peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 162 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +K LV PIL++ P+ + + ++ L+ ++ + +Y+ + + A QI V R+ + Sbjct: 1 MTRKKLVKSSHPILKKEIAPVTEFDENLSLLLKDLEDTLYAEEAAAICAPQINVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + INP + + SD+ EG +++P+ +V RS I ++ D N Sbjct: 61 I----DMEMDGLLQLINPVVQSQSDEMITDLEGSITLPNTFGEVNRSKMIVIQSSDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +RL Sbjct: 117 QVELTAYDDVARMILHMIDHLNGILFTEKANRL 149 >gi|229098440|ref|ZP_04229384.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] gi|228684963|gb|EEL38897.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-29] Length = 182 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49 K ++ DPILR V+ + EK + + +I+ M E GIGLAA Sbjct: 1 MKDVIREGDPILRNVAEEVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106 QIGV +++ + + D NPKII+ + + V R Sbjct: 61 PQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|157827157|ref|YP_001496221.1| polypeptide deformylase [Rickettsia bellii OSU 85-389] gi|157802461|gb|ABV79184.1| Polypeptide deformylase [Rickettsia bellii OSU 85-389] Length = 187 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 16/166 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R ++ Sbjct: 1 MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 60 Query: 61 IDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIP------DYRADVKRSAFIT 111 +D+ + + P INP++ S++ + E C+SI DV+R I+ Sbjct: 61 VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCISIRKEDGIAFIIGDVERPKNIS 120 Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150 + Y+D + + +G + CLQHELDHL+GILFID L Sbjct: 121 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 166 >gi|299139618|ref|ZP_07032792.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] gi|298598546|gb|EFI54710.1| peptide deformylase [Acidobacterium sp. MP5ACTX8] Length = 191 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 17/166 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 ++ +V +P+LR S+ + K ++ I NLID M E + G+GLAA Q+G +L Sbjct: 1 MRLKIVTVGEPVLRATSQMLSKEQILSPSIQNLIDYMRETVRDAPGVGLAAPQVGESLQL 60 Query: 59 VVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VI+ + H+ V +NP + + + + EGCLS+P + A V Sbjct: 61 AVIEDKAEYHKNLTEAEMKERGRAAVPFHVLVNPVLEVRGESTATFFEGCLSLPGFTALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 R+ + V +D + ++I A G A LQHE+DHL+G L+ID + Sbjct: 121 PRAKEVRVTGLDHRGEPRVIEASGWYARILQHEIDHLHGTLYIDRM 166 >gi|116783457|gb|ABK22950.1| unknown [Picea sitchensis] Length = 305 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPI--EKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V DP+L + + ++I S+ I +ID+M+ VM++ G GLAA Q+GV +++V+ Sbjct: 118 EIVQAGDPVLHECAAEVAVDEIGSERIQKIIDDMIAVMWNAPGCGLAAPQLGVPLQIIVL 177 Query: 62 DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + ++ H + ++ INPK+ + + + EGCLS+ +R V+R Sbjct: 178 EDKEEYIRFTLKEETEAQERHPFDLLIIINPKLKSKGIKTAKFFEGCLSVNGFRGLVERH 237 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + I A G A LQHE DHL G+L++D L Sbjct: 238 LEVEVTGFGRDGLPIKINATGWKARILQHECDHLAGLLYVDKLIP 282 >gi|229031607|ref|ZP_04187606.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] gi|228729701|gb|EEL80682.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1271] Length = 184 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + E+ + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEEVSMPASEEDTTALKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIG+ +++ + + D NPKII+ + + V Sbjct: 63 APQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|293343343|ref|XP_002725458.1| PREDICTED: peptide deformylase-like protein-like [Rattus norvegicus] gi|293355230|ref|XP_001073696.2| PREDICTED: peptide deformylase-like protein [Rattus norvegicus] Length = 231 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++V++ Sbjct: 57 QVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAPQLGVPLQVLVLEFP 116 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D V +NP + + EGC S+ + A V R + Sbjct: 117 DRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + A G A +QHE+DHL+G LFID + Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDS 218 >gi|239626610|ref|ZP_04669641.1| peptide deformylase [Clostridiales bacterium 1_7_47_FAA] gi|239516756|gb|EEQ56622.1| peptide deformylase [Clostridiales bacterium 1_7_47FAA] Length = 153 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLV 59 M + + DPILR+ + ++ ++ I L+D+M E ++ +G LAA Q+G+L RLV Sbjct: 1 MAIRNIRYDNDPILRKRCKEVKTVDDKIRLLLDDMAETLHHTENGAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID D+ + I EGCLS P+ R +T++ +D N Sbjct: 61 VIDYCDYHLKLVNPQIIG------YSGVQECIEGCLSFPNRFVKTIRPQKVTIQSLDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + II + +A C HEL+HL+GI+F+D Sbjct: 115 KEIIITGENEMAKCFCHELEHLDGIIFLDK 144 >gi|303239362|ref|ZP_07325890.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302593148|gb|EFL62868.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 155 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D +L +V R ++ I++ I+ L+ +M + MY+ +G+GLAA Q+GVL RLVV Sbjct: 1 MALRNVRIDGDDVLGKVCRQVDVIDNRILILLKDMADTMYAENGVGLAAPQVGVLKRLVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + EGCLS+P+ +V R + V ++ + Sbjct: 61 IDVGEGLIELINPKIVKEEGEVLDI------EGCLSVPELVGEVVRPKKVWVEALNTKGE 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + + LLA HE+DHL+GILF +L I KK K Sbjct: 115 KICLEGEDLLARAFCHEIDHLDGILFKSRAIKL----INKKELK 154 >gi|290955665|ref|YP_003486847.1| polypeptide deformylase [Streptomyces scabiei 87.22] gi|260645191|emb|CBG68277.1| polypeptide deformylase [Streptomyces scabiei 87.22] Length = 218 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + +++ + + + M++ G+GLAA Q+GV R+ VI Sbjct: 27 LPIVAAGDPVLRRTAEPFDGQLDPALLARFVAALRATMHAAPGVGLAAPQVGVSLRIAVI 86 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + EGCLS+P ++A V R A + Sbjct: 87 EDPAPVPEEVRLARGRVPQPFRVLVNPAYEAVGPFRDAFFEGCLSVPGWQAVVARHARVR 146 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R +D + G A +QHE DHLNG L++DH Sbjct: 147 LRALDERGRAVDEEFSGWPARIVQHETDHLNGTLYLDH 184 >gi|255003823|ref|NP_080789.2| peptide deformylase-like protein [Mus musculus] Length = 231 Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E ++ L+ M++VM +GL+A Q+GV +++ ++ Sbjct: 57 QVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAPQLGVPLQVLALEFP 116 Query: 65 DH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D V +NP + + EGC S+ + A V R + Sbjct: 117 DKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 176 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + A G A +QHE+DHL G LFID + Sbjct: 177 QISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMDS 218 >gi|229157552|ref|ZP_04285629.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] gi|228626002|gb|EEK82752.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC 4342] Length = 181 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAA 49 K ++ DPILR V+ + E+ + + +I+ M E GIGLAA Sbjct: 1 MKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKR 106 QIG+ +++ + + D NPKII+ + + V R Sbjct: 61 PQIGISKKMIAVHVTDTDGTLYSHALFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 121 YTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|270157701|ref|ZP_06186358.1| peptide deformylase [Legionella longbeachae D-4968] gi|269989726|gb|EEZ95980.1| peptide deformylase [Legionella longbeachae D-4968] Length = 172 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+V+ PI E + +L+ M+++M +G+AA QIGV R++V Sbjct: 9 NPILRQVAEPINASEFGTPWLKSLVQTMIDIMAEKAAVGVAAPQIGVSKRVIVFGTSYTK 68 Query: 68 HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 R+ + +I S++ EGCL+ D +V R+ I D Sbjct: 69 RRQPEYPIPDTALINPTLKVLSEEIQTDYEGCLNCDDIMGEVPRAMEIEYSGFDIEGNPV 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+GILFID + Sbjct: 129 TKRARGLEARILQHEIDHLDGILFIDRIED 158 >gi|194014264|ref|ZP_03052881.1| peptide deformylase [Bacillus pumilus ATCC 7061] gi|194013290|gb|EDW22855.1| peptide deformylase [Bacillus pumilus ATCC 7061] Length = 185 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P+LR+ + +E + + +M+E + ++ G+GLAA Q Sbjct: 6 DIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDADMAEKYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 I V R++ + +D + NP+I++ S + + V R Sbjct: 66 INVSKRMIAVHCEDEDGVEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVPRYQ 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ + I G A QHE+DHLNGI+F DH+ + Sbjct: 126 KIRVKGTTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|209523408|ref|ZP_03271963.1| peptide deformylase [Arthrospira maxima CS-328] gi|209496150|gb|EDZ96450.1| peptide deformylase [Arthrospira maxima CS-328] Length = 177 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 6/168 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + DP+LR ++P+ I + I +LID+++ + +G+G+AA Q+G R++VI Sbjct: 4 ILAVTQLGDPVLRDHAQPVANIWEARIQSLIDDLMATVIEKNGVGIAAPQVGYSDRILVI 63 Query: 62 -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 A P INPKII S++ EGCLS+P R V R I V Y Sbjct: 64 ASRPSIRYPAAPEMEPTAMINPKIIGKSEEMVADWEGCLSVPGIRGIVNRYQAIEVEYTS 123 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + Q G +A QHE DHL GI+F+D ++ M + K Sbjct: 124 RDGHLQHRELTGFVARIFQHEYDHLEGIIFLDRVADSHSMMTEDEYQK 171 >gi|302384945|ref|YP_003820767.1| peptide deformylase [Clostridium saccharolyticum WM1] gi|302195573|gb|ADL03144.1| peptide deformylase [Clostridium saccharolyticum WM1] Length = 151 Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG-LAAVQIGVLYRLV 59 M + + F D LR S+P+E++N I ++D+M E +++T G LAA Q+G+L RLV Sbjct: 1 MALREIRTFDDNELRLKSKPVEQVNDRIRMILDDMAETLHNTPNGGALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VIDL D + + +I +S+ E CLS P V+R + V+ +D N Sbjct: 61 VIDLGDGVRK------LINPVILWSEGEQFEPEACLSFPGLWGKVRRPKSVVVKALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFID 148 + I A +A CL HE+DHL+GI+F D Sbjct: 115 CERKIKASDFMAKCLCHEIDHLDGIVFTD 143 >gi|307328424|ref|ZP_07607600.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] gi|306885997|gb|EFN17007.1| peptide deformylase [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 4 KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LR+ + P E + L+ M E M+S G+GLAA QIGV RL VI Sbjct: 20 LPIVSAGVPVLRQPALPYEGQLAADQLDRLLAAMRETMHSAPGVGLAAPQIGVPLRLAVI 79 Query: 62 DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLSIP ++A V R I Sbjct: 80 EDPAEVAAEVQEVRGRVPQPYRVLVNPGYEPVGHGRAAFFEGCLSIPGWQAVVSRPDRIR 139 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +R D + G A +QHE DHL+G+L++D Sbjct: 140 LRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] gi|254767599|sp|A7NPM9|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941] Length = 185 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 16/169 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P IL P+ N + L+ +M E M++ +G+GLAA QIGV Sbjct: 1 MGLRHILRIDNPDEKKILTTRCHPVRMPNPSLKQLVADMFETMHAANGVGLAAPQIGVTQ 60 Query: 57 RLVVIDLQDHAH-----------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 RL VI + + V INP+I+ SD V EGCLS+P + +V Sbjct: 61 RLAVIAIPPMMEERPDGTKVEVAPEQTFVLINPEIVKASDQEDVGLEGCLSLPGWYGEVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLSRL 153 R+A++TV Y D N + Q I GLLA LQHE+DHL+G+LF + + L Sbjct: 121 RAAWVTVEYTDLNGRRQRIRRATGLLARALQHEIDHLDGVLFTERIRDL 169 >gi|221066139|ref|ZP_03542244.1| peptide deformylase [Comamonas testosteroni KF-1] gi|220711162|gb|EED66530.1| peptide deformylase [Comamonas testosteroni KF-1] Length = 179 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 7/160 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ DP L R+++P+ + + + L+ ++L+ M++ +G GLAA QIG ++V Sbjct: 1 MTVRAILKMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMV 60 Query: 60 VI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V A V INP I ++ + EGCLS+P RA V R + + Sbjct: 61 VFGSGEPNPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWSKVRYT 120 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 D DG A +QHE DHL G L+ + Sbjct: 121 GFDLYGDPIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 160 >gi|91205481|ref|YP_537836.1| polypeptide deformylase [Rickettsia bellii RML369-C] gi|91069025|gb|ABE04747.1| Polypeptide deformylase [Rickettsia bellii RML369-C] Length = 195 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 90/166 (54%), Gaps = 16/166 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +LR S P+ I+S + + + +MLE MY+ +GIG++A+Q+G R ++ Sbjct: 9 MPILKIIKTPNSLLRIKSLPVTIIDSQMKDFMKSMLETMYNEEGIGISAIQVGKPIRALI 68 Query: 61 IDLQDHAHRKN---PMVFINPKIITFSDDFSVYQEGCLSIP------DYRADVKRSAFIT 111 +D+ + + P INP++ S++ + E CLSI DV+R I+ Sbjct: 69 VDIPKEENDQIKREPFFIINPEVNYLSEEKVILNEDCLSIRKEDGIAFIIGDVERPKNIS 128 Query: 112 VRYMDCNAQHQIIYADG-------LLATCLQHELDHLNGILFIDHL 150 + Y+D + + +G + CLQHELDHL+GILFID L Sbjct: 129 ISYIDLEGNSKELTCNGNNSDYDLWFSRCLQHELDHLDGILFIDRL 174 >gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56] gi|123722301|sp|Q253S4|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56] Length = 186 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + ILRR + I +I I L+ +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSHILRRKADIIPEITDTIRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVV 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P V+INP + S+D + +EGCLSIP RADV R ITV + Sbjct: 61 CVEGETEDGDLIFCDFPKVYINPVLSNASEDLVIGREGCLSIPGLRADVYRPQSITVTAL 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHL+G+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173 >gi|114778706|ref|ZP_01453518.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] gi|114551068|gb|EAU53630.1| polypeptide deformylase [Mariprofundus ferrooxydans PV-1] Length = 169 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 4/159 (2%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDL 63 ++ PD LR+V + SD+ + VM + G +G+AA QIG R++VID Sbjct: 11 DILKHPDERLRQVCPDVTDFGSDLEARFAQLDAVMRAAPGGVGIAAPQIGWQQRMIVIDC 70 Query: 64 QDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ +++ +I + ++ +EGCLS+PD+ A V+R+ + V Y D + Sbjct: 71 RESLRPCKNNGLLWMSNPVIESVEGKALGREGCLSVPDWVAMVERARSLQVSYDDVHGDR 130 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + G A +QHELDHL+GILFID + RD++ + Sbjct: 131 LSLESTGFEARVIQHELDHLDGILFIDRVVS-ARDLVRR 168 >gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] gi|133776536|gb|EBA40356.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC 25986] Length = 180 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-DLQ 64 +V+ PDP LR+ IE+I I L + M ++M+ G GLAA QIG L +LV I Sbjct: 8 IVLSPDPRLRQECAVIEEITPAIEALAEKMKKIMFENGGCGLAAPQIGELIQLVTIDCDY 67 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + +P V INP I+ SD + EGCLSIP +++R + V D +A Sbjct: 68 SDKNDYDPYVLINPVIVEQSDHLVPFSEGCLSIPGISCEIERPDHVVVEAYDLDANLIRY 127 Query: 125 YADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G L CLQHE+DHL+G + L ++R K+ Sbjct: 128 EATGDLFCVCLQHEIDHLHGNTMFERLKPMQRIKAVKEYQ 167 >gi|319892209|ref|YP_004149084.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161905|gb|ADV05448.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] Length = 161 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++ Sbjct: 1 MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + INP++I SD+ + EGCLS+P +V RS ITVR D N Sbjct: 61 ----DMEQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D+LNGILF+D + R Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMIDRE 148 >gi|323464693|gb|ADX76846.1| peptide deformylase 1 [Staphylococcus pseudintermedius ED99] Length = 161 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + + PILR+ + P+ ++ + +LI ++ + +Y +G LAA QIGV R+ ++ Sbjct: 1 MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQALAAPQIGVSERVAIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + INP++I SD+ + EGCLS+P +V RS ITVR D N Sbjct: 61 ----DMEQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRSRMITVRSYDLNGNE 116 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D+LNGILF+D + R Sbjct: 117 VEMTAYDDIARMILHVIDNLNGILFVDMMDRE 148 >gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799] gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799] Length = 175 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + +PILR+ +RP+ + +I L ML M + G+G+AA Q+ RL+ Sbjct: 1 MTPMAIAQLGEPILRQRARPVSDATAAEIQTLWQRMLVTMEAAGGVGIAAPQVFEPLRLM 60 Query: 60 VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 +I A + +P+V INP+I+ S + + EGCLS+P R V+R + VRY Sbjct: 61 IIASRPNARYPDAPQMDPVVLINPEILNTSGELVSFVEGCLSVPGIRGTVRRPDNVEVRY 120 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +D Q Q + G A HE DHL G F+D + Sbjct: 121 LDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQVDS 158 >gi|260551188|ref|ZP_05825391.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] gi|260405793|gb|EEW99282.1| peptide deformylase 2 [Acinetobacter sp. RUH2624] Length = 160 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSNEVCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGETIESVFHGFPARIVQHEIDHLNGILFVERIS 160 >gi|291549493|emb|CBL25755.1| peptide deformylase [Ruminococcus torques L2-14] Length = 165 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + +P+ K+ LI++ML+ MY G+GLAA Q+G+L ++VV Sbjct: 1 MAIREVREMGDDVLEKQCKPVTKMTLRTKILIEDMLDTMYEKMGVGLAAPQVGILKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + +EGCLS+P V R ++ VR ++ N + Sbjct: 61 IDVGEGPIVLINPEIVETSGE------QTGEEGCLSVPGKWGIVTRPNYVKVRALNENME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + LLA HE+DHL G L+++ + Sbjct: 115 EFEIEGEELLARAFCHEIDHLGGHLYVEKVE 145 >gi|187734744|ref|YP_001876856.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] gi|187424796|gb|ACD04075.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835] Length = 226 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 15/175 (8%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ + P+LR P+ IN DI++ +D+M E + GIGLAA Q+G +LV I+ Sbjct: 14 ILDILQYGHPLLREECGPVVHINRDILSFLDDMQETLAQ-GGIGLAAPQVGRPIQLVTIN 72 Query: 63 LQ-------DHAHRKNPMVFINPKIITFSDDF-------SVYQEGCLSIPDYRADVKRSA 108 + P + F + Y+EGCLSI A+V R + Sbjct: 73 IPSTDATTTWLEVDGCPTTLSRIMPLNFINPILHPFGKKVPYREGCLSITKVYANVMRRS 132 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + + + +GLLA CLQHE+DHL+G LF D +S D + +++ Sbjct: 133 CVRAVLTMMDGRTVTVKCNGLLARCLQHEVDHLHGGLFTDLVSSGDHDKVIRRLR 187 >gi|157692133|ref|YP_001486595.1| peptide deformylase [Bacillus pumilus SAFR-032] gi|157680891|gb|ABV62035.1| peptide deformylase [Bacillus pumilus SAFR-032] Length = 185 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P+LR+ + +E + + +M+E + ++ G+GLAA Q Sbjct: 6 DIVRDGHPVLRQTAEAVELPPTEEEKQQLADMIEFVKNSQDAEMAEKFGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 I + R++ + +D + NP+I++ S + + V R Sbjct: 66 INISKRMIAVHCEDEDGEEYSYALFNPRIVSHSVKRAYLTTGEGCLSVDEAIPGFVPRYQ 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ + I G A QHE+DHLNGI+F DH+ + Sbjct: 126 KIRVKATTLEGEDIDIRLKGFPAIVFQHEIDHLNGIMFYDHIQK 169 >gi|229019177|ref|ZP_04176010.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] gi|229025422|ref|ZP_04181837.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228735877|gb|EEL86457.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1272] gi|228742117|gb|EEL92284.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH1273] Length = 184 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 6 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108 IG+ +++ + + D NPKII+ + + V R Sbjct: 66 IGISKKMIAVHVTDTNGTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|254495945|ref|ZP_05108853.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254354823|gb|EET13450.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 179 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 11/174 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIM------NLIDNMLEVMYSTDGIGLAAVQIGV 54 M + +V + L S P+ + I LI NM + M + G+G+AA QIG Sbjct: 1 MTIQTVVKMGNKQLGIPSEPVVDFDPAIRSYPELTELIQNMKDTMDAKGGVGIAAPQIGY 60 Query: 55 LYRLVVIDLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 R+++ + + N INP SD+ EGCLS+P R V R Sbjct: 61 NKRVIMFGFEKNKRYPNEKPVPFTILINPIYQIMSDELVEEWEGCLSVPGLRGLVPRYKK 120 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I D + A A +QHE DHL+G+LF L ++ +++ Sbjct: 121 IEYSGYDPEGKLITRVAADFHARIIQHECDHLDGVLFPYRLKDIRFFGYEEELE 174 >gi|229134783|ref|ZP_04263591.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] gi|228648636|gb|EEL04663.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-ST196] Length = 181 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 3 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108 IG+ +++ + + D NPKII+ + + V R Sbjct: 63 IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 166 >gi|266624813|ref|ZP_06117748.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863310|gb|EFC95608.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 149 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + D ILR+ + +++++ I ++++M + ++ + +G +AA Q+G+L RLV Sbjct: 1 MAVLNMRYDGDEILRKKCKEVKEVDDRIREILNDMTDTLHATPNGAAIAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID+ + +I EGCLS P+ R + V+ +D N Sbjct: 61 VIDMGTGLMKLV------NPVIVEQTGEQDCIEGCLSFPEKYGRTIRPQTVIVKALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +A C HELDHL+G+ F+D ++ Sbjct: 115 EVVTLTGIDEMAKCFCHELDHLDGVCFVDKVT 146 >gi|125778496|ref|XP_001360006.1| GA16218 [Drosophila pseudoobscura pseudoobscura] gi|54639756|gb|EAL29158.1| GA16218 [Drosophila pseudoobscura pseudoobscura] Length = 196 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 20/171 (11%) Query: 1 MVKKPLVIF---PDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + F DP+LR+++ + + +I ++D M++V+ D +G+AA Q+GV Sbjct: 1 MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDY 100 R++V++ ++ + NP++ S + + EGC+S+ Y Sbjct: 61 PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A V+R + ++ + + +G A QHE+DHLNG +++D + Sbjct: 121 SAQVERYDRVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171 >gi|195157966|ref|XP_002019865.1| GL12632 [Drosophila persimilis] gi|194116456|gb|EDW38499.1| GL12632 [Drosophila persimilis] Length = 196 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 20/171 (11%) Query: 1 MVKKPLVIF---PDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + F DP+LR+++ + + +I ++D M++V+ D +G+AA Q+GV Sbjct: 1 MSVPPYLHFTQIGDPVLRQIAEEVPPESIGTVEIDQIVDRMVKVLRHYDCVGVAAPQVGV 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDY 100 R++V++ ++ + NP++ S + + EGC+S+ Y Sbjct: 61 PLRIIVMEFREGKQEQFKPEIYAERKMSTLPLAVFINPELEITSSAVNKHPEGCMSVRGY 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A V+R + ++ + + +G A QHE+DHLNG +++D + Sbjct: 121 SAQVERYERVRIKGIGKLGTPSEMELEGWNARIAQHEVDHLNGKIYVDRMD 171 >gi|167957315|ref|ZP_02544389.1| peptide deformylase [candidate division TM7 single-cell isolate TM7c] Length = 211 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M E LAAVQ+ Sbjct: 21 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 80 Query: 54 VLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ D+ + INP+II + + + EGCLS+ V R + V Sbjct: 81 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 140 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 141 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 187 >gi|229162908|ref|ZP_04290865.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] gi|228620790|gb|EEK77659.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus R309803] Length = 181 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 3 DVIREGNPILRNVAEEVSIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 IG+ +++ + + D NPKII+ S + + + D V R Sbjct: 63 IGISKKMIAVHVTDTNGTLYSHALFNPKIISHSVERTYLPNGEGCLSVDRDVPGYVPRYT 122 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RITVKATSINGEEIKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 167 >gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293] Length = 174 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLVVIDLQ 64 ++ F DP LR + + + + + ID + ++ G LAA QI +L ++VVID Sbjct: 10 IIRFGDPRLRVLCSEVAVFHKGLHDKIDCIARTLHQHGGGAALAAPQIALLKQIVVIDYL 69 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + + + EGCLS+P + V+R I V Y D + + Sbjct: 70 GEYYELINPQIVEASGSSIDY------EGCLSLPGFWGQVERHQRIKVSYQDRFGEVYSV 123 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRL 153 A +A C QHE+DHL+G+LFID +S Sbjct: 124 EAHDRMARCFQHEIDHLSGVLFIDRMSDE 152 >gi|223043772|ref|ZP_03613815.1| polypeptide deformylase [Staphylococcus capitis SK14] gi|222442869|gb|EEE48971.1| polypeptide deformylase [Staphylococcus capitis SK14] Length = 162 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L++ S+ + + + + +L+ ++ + +Y + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPLLKKESKTVNQYDDQLKSLLKDLEDTLYEEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + INP I ++SD+ EG +S+P+ +V RS I ++ D N Sbjct: 61 I----DMELEGLLQLINPVIKSYSDEEITDLEGSVSLPNVFGEVTRSKMIVLQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF D +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTDKANRI 149 >gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo] gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo] Length = 165 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P+ +LR ++ I+ I++ I + M+E+M + G+GLAA Q+G+ + V+ Sbjct: 2 EMVFYPNDLLRVKTKQIDNIDNKIRDYAKKMIELMDISGGVGLAAPQVGLDLSIFVVR-- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 P+VFINP I S + + Y+EGCLSIP D+ R I + + D N + I Sbjct: 60 -ENKMAKPLVFINPVITETSYELNSYKEGCLSIPGVYYDLMRPKGIVINFYDENEKSFTI 118 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLR 169 LA +QHE+DHLNG+LFID+ + I K+ K ++ R Sbjct: 119 ENSDFLARIIQHEMDHLNGVLFIDYYE----ERIKNKLLKPYMRER 160 >gi|167747469|ref|ZP_02419596.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] gi|167652831|gb|EDR96960.1| hypothetical protein ANACAC_02190 [Anaerostipes caccae DSM 14662] Length = 153 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG-IGLAAVQIGVLYRLV 59 M + + DPIL++ + + +++ +D++++ ++S+D LAA Q G+L R++ Sbjct: 1 MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSSDNGAALAANQAGILRRMI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + + V + EGCLS P+ R A + V +D N Sbjct: 61 VIDYEGYYLKLVNPVIVES------SGSQECVEGCLSFPNRFGKTIRPARVKVEALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 G +A C HE+DHL+G +FID + Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145 >gi|54309245|ref|YP_130265.1| polypeptide deformylase [Photobacterium profundum SS9] gi|46913677|emb|CAG20463.1| hypothetical polypeptide deformylase [Photobacterium profundum SS9] Length = 175 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++ +P+LR + + + + L+ ++ ++M S G+G+AA Q+G R + Sbjct: 3 APLEIIQLGNPLLRVPAEALSAVQIETALPLLKSLEQIMLSHQGVGIAAPQVGQPLRAFI 62 Query: 61 IDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + + + + P + INP+++ S++ EGCLSIP RA V R I VRY+ Sbjct: 63 VASRPNDRYPHAPLMEPTIMINPELLWQSEEMEKDWEGCLSIPGIRAKVNRYTHIRVRYL 122 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + G +A QHELDHLNGI+F+D +L Sbjct: 123 NASGDVIETEFTGFIARIFQHELDHLNGIVFLDRADKL 160 >gi|320333260|ref|YP_004169971.1| peptide deformylase [Deinococcus maricopensis DSM 21211] gi|319754549|gb|ADV66306.1| Peptide deformylase [Deinococcus maricopensis DSM 21211] Length = 214 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 23/188 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKI----------NSDIMNLIDNMLEVMYSTDGIGLAAVQI 52 P+ ++ DPILR+ +R IE + + + + MLE MY G+GLAA Q+ Sbjct: 9 VYPIRLYGDPILRKKARAIEDLQAPLTIPGFAPAALAQVARTMLETMYDAHGVGLAAPQV 68 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIIT-------------FSDDFSVYQEGCLSIPD 99 G+ R+ V + + +++ D + Sbjct: 69 GLGVRMFVAAEYADDEDEGQETPLRSRVLREFVAINPVLEVLNKKKDSHYQEGCLSIPGI 128 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 Y VKR + + Y++ + Q +++ A+ LA QHE+DHL+G F+D L D Sbjct: 129 YEEGVKRDRAVRMTYLNLDGQRKVVEAEDYLARVFQHEVDHLDGRFFLDRLPAEVTDDHR 188 Query: 160 KKMSKLVQ 167 K ++ + + Sbjct: 189 KDLAAMQR 196 >gi|225018698|ref|ZP_03707890.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] gi|224948426|gb|EEG29635.1| hypothetical protein CLOSTMETH_02648 [Clostridium methylpentosum DSM 5476] Length = 152 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 6/148 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + +V+ D ILR+ R + N + +L+D++ E M+ DG+GLAA Q+GVL R VV Sbjct: 1 MAIRTIVVDDDSILRKKCREVIDYNKRLHDLLDDLAETMHKADGVGLAAPQVGVLRRAVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I EGCLS P+ V+R +TV+ D + + Sbjct: 61 IDVGEGVIELV------NPEIIKKSGSQNGAEGCLSYPNEFGMVERPMQVTVKAFDRDGK 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + LLA + HE+DHL+GI+F D Sbjct: 115 EFKLIGKELLARAICHEVDHLDGIVFKD 142 >gi|317471201|ref|ZP_07930569.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] gi|316901307|gb|EFV23253.1| polypeptide deformylase [Anaerostipes sp. 3_2_56FAA] Length = 153 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 7/151 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59 M + + DPIL++ + + +++ +D++++ ++S +G LAA Q G+L R++ Sbjct: 1 MAVRKIRTGNDPILKKKCKTVPEVDDKARQQLDDLMDTLHSAENGAALAANQAGILRRMI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + + +I S EGCLS P+ R A +TV +D + Sbjct: 61 VIDHEGYYLKLV------NPVIVESSGSQECVEGCLSFPNRFGKTIRPAKVTVEALDEHG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHL 150 G +A C HE+DHL+G +FID + Sbjct: 115 HEVSYTVVGEMAKCFCHEIDHLDGEVFIDKV 145 >gi|169796843|ref|YP_001714636.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213156766|ref|YP_002318427.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|215484319|ref|YP_002326548.1| peptide deformylase [Acinetobacter baumannii AB307-0294] gi|294838372|ref|ZP_06783055.1| peptide deformylase [Acinetobacter sp. 6013113] gi|294859949|ref|ZP_06797718.1| peptide deformylase [Acinetobacter sp. 6013150] gi|301345256|ref|ZP_07225997.1| peptide deformylase [Acinetobacter baumannii AB056] gi|301510240|ref|ZP_07235477.1| peptide deformylase [Acinetobacter baumannii AB058] gi|301594430|ref|ZP_07239438.1| peptide deformylase [Acinetobacter baumannii AB059] gi|169149770|emb|CAM87661.1| peptide deformylase 2 [Acinetobacter baumannii AYE] gi|213055926|gb|ACJ40828.1| peptide deformylase [Acinetobacter baumannii AB0057] gi|213986720|gb|ACJ57019.1| peptide deformylase [Acinetobacter baumannii AB307-0294] Length = 160 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|163941714|ref|YP_001646598.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|229013180|ref|ZP_04170324.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] gi|229061641|ref|ZP_04198980.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|229168715|ref|ZP_04296436.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|163863911|gb|ABY44970.1| peptide deformylase [Bacillus weihenstephanensis KBAB4] gi|228614727|gb|EEK71831.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621] gi|228717648|gb|EEL69304.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603] gi|228748130|gb|EEL97991.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM 2048] Length = 184 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + + +I+ M E GIGLAA Q Sbjct: 6 EVIREGNPILRDVAEEVSLPASEEDTNTLKEMIEFVINSQDPEMAEKYNLRPGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108 IG+ +++ + + D NPKII+ + + V R Sbjct: 66 IGISKKMIAVHVTDTNDTLYSYALFNPKIISHSVERTYLQNGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 126 RITVKATTINGEDVKLRLKGLPAIVFQHEIDHLNGVMFYDHINK 169 >gi|124359186|gb|ABD28402.2| Formylmethionine deformylase [Medicago truncatula] Length = 266 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+L +R ++ + I +ID M+ VM + GI L+A +IG+ R++V++ Sbjct: 67 IVQAGDPVLHEPAREVDHSEINSDKIQKIIDGMILVMRNAPGISLSAQKIGIPLRIIVLE 126 Query: 63 LQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +NPK+ S+ ++ EGCLS+ ++A V+R Sbjct: 127 EPKENLYNYTEEVNKIIDRRPFDLLVILNPKLKIKSNKTFLFFEGCLSVHGFQAVVERYL 186 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 187 DVEVEGFDRYGEPIKINASGWHARILQHECDHLDGTLYVDKMVP 230 >gi|212639721|ref|YP_002316241.1| peptide deformylase [Anoxybacillus flavithermus WK1] gi|212561201|gb|ACJ34256.1| N-formylmethionyl-tRNA deformylase [Anoxybacillus flavithermus WK1] Length = 184 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K ++ P LR+V+ + + + ++ ++LE GIGLA Sbjct: 3 TMKDIIKDGHPTLRKVAEEVPLPPSEEDRRILASLLEYVKMSQDPELAKTYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V R++ + + D + NPKI++ S + + V Sbjct: 63 APQINVSKRMIAVHVTDEKGTLHSYALFNPKIVSHSVEMCYLTSGEGCLSVDKAIPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITV + + GL A QHE+DHLNGI+F DH+++ Sbjct: 123 RYMRITVTGTTLEDETVKLRLKGLPAIVFQHEIDHLNGIMFYDHINK 169 >gi|242046748|ref|XP_002461120.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] gi|241924497|gb|EER97641.1| hypothetical protein SORBIDRAFT_02g041130 [Sorghum bicolor] Length = 193 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 55/170 (32%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P V DP+L ++ + + + +ID M++VM G+GLAA QIGV Sbjct: 1 MAVTPGTVKAGDPVLHEPAQEVAPGDVRSEKVQGIIDRMVDVMRKAPGVGLAAPQIGVPL 60 Query: 57 RLVVIDLQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRA 102 R++V++ P + INPKI S +++ EGCLS+ YRA Sbjct: 61 RIIVLEDTQEYISYAPKKEIEAQDRRPFDLLIIINPKIKNTSKRTALFFEGCLSVDGYRA 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V +D N + A G A LQHE DHL G L++D + Sbjct: 121 VVERHLDVEVSGLDRNGSAIKVQASGWQARILQHECDHLEGTLYVDRMVP 170 >gi|184157242|ref|YP_001845581.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|294840985|ref|ZP_06785668.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. 6014059] gi|183208836|gb|ACC56234.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU] gi|193076693|gb|ABO11393.2| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] gi|322507127|gb|ADX02581.1| Peptide deformylase 2 [Acinetobacter baumannii 1656-2] gi|323517106|gb|ADX91487.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii TCDC-AB0715] Length = 160 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + Sbjct: 61 RIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|16803091|ref|NP_464576.1| peptide deformylase [Listeria monocytogenes EGD-e] gi|47096139|ref|ZP_00233739.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|224500304|ref|ZP_03668653.1| peptide deformylase [Listeria monocytogenes Finland 1988] gi|224502635|ref|ZP_03670942.1| peptide deformylase [Listeria monocytogenes FSL R2-561] gi|254828428|ref|ZP_05233115.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|254830180|ref|ZP_05234835.1| peptide deformylase [Listeria monocytogenes 10403S] gi|254898776|ref|ZP_05258700.1| peptide deformylase [Listeria monocytogenes J0161] gi|254911735|ref|ZP_05261747.1| peptide deformylase [Listeria monocytogenes J2818] gi|254936061|ref|ZP_05267758.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284801383|ref|YP_003413248.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284994525|ref|YP_003416293.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|23396542|sp|Q8Y866|DEF_LISMO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes EGD-e] gi|47015488|gb|EAL06421.1| polypeptide deformylase [Listeria monocytogenes str. 1/2a F6854] gi|258600823|gb|EEW14148.1| polypeptide deformylase [Listeria monocytogenes FSL N3-165] gi|258608650|gb|EEW21258.1| polypeptide deformylase [Listeria monocytogenes F6900] gi|284056945|gb|ADB67886.1| peptide deformylase [Listeria monocytogenes 08-5578] gi|284059992|gb|ADB70931.1| peptide deformylase [Listeria monocytogenes 08-5923] gi|293589685|gb|EFF98019.1| peptide deformylase [Listeria monocytogenes J2818] Length = 183 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|319941618|ref|ZP_08015942.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] gi|319804848|gb|EFW01702.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B] Length = 179 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 10/162 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ +P+L + + P+ + + L+ +M + M++ G+G+AA Q+GV R++ Sbjct: 1 MVLEVMRLGEPVLMKEALPVRDFGSPRLRKLVADMWDTMHAEGGVGIAAPQVGVSERIIC 60 Query: 61 IDLQDHAHRKNPMVFINPKIIT---------FSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + + +I +DD+ EGCLS+P R V R+ I Sbjct: 61 FGFEASSRYPDAPAVPQTVLINPTVELLLEGTADDWEDGWEGCLSVPGMRGVVPRARRIR 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + + A+ A +QHE DHL GI++ + Sbjct: 121 YTGFGLDGETIEREAEEFHARVVQHEFDHLKGIVYPMRIKDW 162 >gi|239503010|ref|ZP_04662320.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB900] Length = 160 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLTAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + Sbjct: 61 RIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|323487022|ref|ZP_08092334.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323692064|ref|ZP_08106311.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323399670|gb|EGA92056.1| peptide deformylase [Clostridium symbiosum WAL-14163] gi|323503864|gb|EGB19679.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 159 Score = 96.8 bits (239), Expect = 8e-19, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + D +L + +P++++ LI++M E MY +G+GLAA Q+G+ ++VV Sbjct: 1 MAIRSIRTMGDEVLTKECKPVKEMTEHTAELIEDMFETMYEANGVGLAAPQVGIRKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ D + I ++ EGCLS+P V R + V+ ++ + Sbjct: 61 IDVDDGN-----QYVLINPEIVETEGSQTGSEGCLSVPGKTGVVTRPEKVKVKALNEKME 115 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 + +GLLA + HE DHL G L++ Sbjct: 116 EFELEGEGLLARAICHECDHLKGQLYV 142 >gi|255319189|ref|ZP_05360406.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262379692|ref|ZP_06072848.1| polypeptide deformylase [Acinetobacter radioresistens SH164] gi|255303582|gb|EET82782.1| peptide deformylase [Acinetobacter radioresistens SK82] gi|262299149|gb|EEY87062.1| polypeptide deformylase [Acinetobacter radioresistens SH164] Length = 159 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + +L + + E + L M M +G+G+AA Q+ + Sbjct: 1 MSISLPVAQRGEKVLTLKAAEVSENEFNTEWLRQLAQAMHTTMLEQNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A +V +NP+I+ FS + S+ +EGCLS+ D R V+R+ + Sbjct: 61 RIIIVASRSNPRYPDAPEMEAVVMVNPEILEFSRETSLGEEGCLSVSDVRGTVERAETVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + Y+ + G A +QHE+DHLNGILF++ L Sbjct: 121 LCYLTLEGEPVETIYKGFPARIIQHEIDHLNGILFVERL 159 >gi|169837129|ref|ZP_02870317.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 191 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIG 53 M K+ ++ P+ LR+ S+ I I ++ LI +M E LAAVQ+ Sbjct: 1 MKKEDIITLPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVD 60 Query: 54 VLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 L R+V++ D+ + INP+II + + + EGCLS+ V R + V Sbjct: 61 KLERIVIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRV 120 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + ++ + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 121 KALNEDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 167 >gi|260555892|ref|ZP_05828112.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] gi|260410803|gb|EEX04101.1| polypeptide deformylase [Acinetobacter baumannii ATCC 19606] Length = 160 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A N +V +NP+I+ FS + + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSEMCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHL+GILF++ +S Sbjct: 121 VKYLTLQGETVETIFHGFPARIVQHEVDHLDGILFVERIS 160 >gi|226510000|ref|NP_001140879.1| hypothetical protein LOC100272955 [Zea mays] gi|194701558|gb|ACF84863.1| unknown [Zea mays] Length = 256 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 18/168 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M+ P V DP+L ++ + + ++ + +ID M++VM G+GLAA QIGV Sbjct: 64 MMVTPGTVKAGDPVLHEPAQEVAPGDVLSEKVQGVIDRMVDVMRRAPGVGLAAPQIGVPL 123 Query: 57 RLVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102 R++V++ P INPKI + S +++ EGCLS+ YRA Sbjct: 124 RIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKIKSTSKRTALFFEGCLSVDGYRA 183 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V+R + V +D N + A G A LQHE DHL G L++D + Sbjct: 184 VVERHLDVEVSGLDRNGSTMKVRASGWQARILQHECDHLEGTLYVDKM 231 >gi|289803413|ref|ZP_06534042.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 135 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 85/138 (61%), Gaps = 3/138 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D N Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117 Query: 121 HQIIYADGLLATCLQHEL 138 + ADGLLA C+QHE+ Sbjct: 118 PFELEADGLLAICIQHEM 135 >gi|75762798|ref|ZP_00742622.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489709|gb|EAO53101.1| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 221 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLA 48 K ++ DPILR V+ + EK + + +I+ M E GIGLA Sbjct: 3 TMKDVIREGDPILRNVAEDVSLPASEKDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QIGV +++ + + D NPKII+ + + V Sbjct: 63 APQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 RYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKE 170 >gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101] gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1] gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3894-4] Length = 145 Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 4/143 (2%) Query: 28 IMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDD 86 + LID++L+ +Y + +GIGLAA Q+G +VVIDL D+ + + + + Sbjct: 4 VQTLIDDLLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQPL---VLINPKVVSGSN 60 Query: 87 FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 + QEGCLS+PDY ADV+R + V +D + I LA +QHE+DHL+G LF Sbjct: 61 KEMGQEGCLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLF 120 Query: 147 IDHLSRLKRDMITKKMSKLVQLR 169 ID+LS LK+ M KK+ K V+ R Sbjct: 121 IDYLSPLKQQMAMKKVKKHVKNR 143 >gi|120597766|ref|YP_962340.1| peptide deformylase [Shewanella sp. W3-18-1] gi|146294101|ref|YP_001184525.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|120557859|gb|ABM23786.1| peptide deformylase [Shewanella sp. W3-18-1] gi|145565791|gb|ABP76726.1| peptide deformylase [Shewanella putrefaciens CN-32] gi|319427442|gb|ADV55516.1| peptide deformylase [Shewanella putrefaciens 200] Length = 181 Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+ + + ILR+ + + + ++ + +L + M M + G+G+AA Q+ + ++ Sbjct: 12 APLPIAQYGEAILRQTAIEVRQFDAKLTHLAEQMSASMMAAKGVGIAAPQVHSPLAMFIM 71 Query: 62 -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 A P+V +NP+I+ SD+ + +EGCLS+P+ R + R I VRY + Sbjct: 72 ASRPNARYPDAPHMAPVVVVNPQILNVSDELNAGEEGCLSVPEQRFIIPRHDRIEVRYQN 131 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 132 LQGEWQQAVLSGFIARIFQHEFDHLQGITLLER 164 >gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC] gi|33301049|sp|Q823U4|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC] Length = 186 Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + L + ILRR + I +I L+ +M E M + G+GLAA Q+G L V+ Sbjct: 1 MIRELEYYGSHILRRKADIIPEITDATRQLVQDMYETMVAHKGVGLAAPQVGESLSLFVM 60 Query: 62 DLQDH------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++ P V+INP + S+D + +EGCLSIP RADV R ITV + Sbjct: 61 CVEGETEEGDLIFCDFPKVYINPVLSNPSEDLVIGREGCLSIPGLRADVYRPQSITVTAV 120 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR-DMITKKMSKLVQ 167 + + Q + +G A + HE DHL+G+L+ID + K + K+ + Sbjct: 121 NLDGQEFTEHLEGFPARIIMHENDHLHGVLYIDKMEEPKDIKKFKASLEKIRR 173 >gi|152976388|ref|YP_001375905.1| peptide deformylase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025140|gb|ABS22910.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98] Length = 208 Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPI-----EKINSDIMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + E+ + +I+ M+E GIGLAA Q Sbjct: 30 DVIREGNPILRTVAEEVQLPASEEDTQTLKEMIEFVINSQNPEMVEKYNLRPGIGLAAPQ 89 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 IG+ R++ I + D NPKII+ S + + + + V R A Sbjct: 90 IGISKRMIAIHVTDTNETLYSYALFNPKIISHSVERTYLPAGEGCLSVDREVPGYVPRYA 149 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 150 RITVKATTVDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 192 >gi|302540288|ref|ZP_07292630.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653] gi|302457906|gb|EFL20999.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%) Query: 4 KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LR+ + P + + + L+ M E M++ G+GLAA QIGV RL VI Sbjct: 20 LPIVSAGLPVLRQAALPYDGQLPDGQLDRLLRAMRETMHNAPGVGLAAPQIGVPLRLAVI 79 Query: 62 DLQDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP D + + EGCLS+P ++A V R I Sbjct: 80 EDPAEVATEVREARGRVPQPYRVLVNPSYEPVGDARAAFFEGCLSVPGWQAVVSRPERIR 139 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 +R D + G A +QHE DHL+G+L++D Sbjct: 140 LRGQDETGRELDEEFTGWPARIVQHETDHLDGVLYLD 176 >gi|325121302|gb|ADY80825.1| peptide deformylase 2 [Acinetobacter calcoaceticus PHEA-2] Length = 160 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ + P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLTAAPVSVNELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGETVETNFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|159900945|ref|YP_001547192.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] gi|159893984|gb|ABX07064.1| peptide deformylase [Herpetosiphon aurantiacus ATCC 23779] Length = 211 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 19/188 (10%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ DP +LR ++ I + + L+D+M+E M G+G+AA Q+GV Sbjct: 1 MAVRRVLQIEDPTDAVVLRAKAKRITSFDQSLAGLVDDMIETMREARGVGIAAPQVGVSR 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 R+VVI+ V +NP+II S++ + QEGCLS+P V Sbjct: 61 RVVVIEEPAQYEEHEDGTQTQIAPAVLYVMVNPEIIKASEETHMLQEGCLSLPGRYTKVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYA----DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R+ ++T++Y D + Q + D + QHELDHL+GI+F D ++ + + +K Sbjct: 121 RNKWVTIKYYDLKGREQRLRHIPAEDYKVGHIAQHELDHLDGIMFTDRMTEESKLVDYRK 180 Query: 162 MSKLVQLR 169 S+ +L+ Sbjct: 181 ESESARLK 188 >gi|54297041|ref|YP_123410.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] gi|53750826|emb|CAH12234.1| hypothetical protein lpp1083 [Legionella pneumophila str. Paris] Length = 172 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI E +S + LI M +M +G+AA QIG+ R++V + Sbjct: 9 DPILRQTAEPIAESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFSTEYTK 68 Query: 68 HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 RK + +I S + EGCL+ + +V R+ I D + Sbjct: 69 RRKPEYPIPDTALINPSLKILSKEIQNGYEGCLNCGEIMGEVPRAMEIEYSGFDIDGNKI 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 129 TKTASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|220912690|ref|YP_002487999.1| peptide deformylase [Arthrobacter chlorophenolicus A6] gi|219859568|gb|ACL39910.1| formylmethionine deformylase [Arthrobacter chlorophenolicus A6] Length = 226 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE-KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P LR+ + P + +I + + LI+ M +VM+ G+GLAA Q+G+ +L V++ Sbjct: 30 PIVQAGHPALRQKAAPFDGQITPEQLARLIELMRQVMHEAPGVGLAAPQLGIPLQLAVLE 89 Query: 63 LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + + + + +NP D + + EGCLS+ +A V R + + Sbjct: 90 DKYDVDHEAAALRNRAPLDFLAILNPSYTPAGPDRAAFYEGCLSLNGLQAVVSRPQAVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 ++ + + G A +QHE DHLNGIL++D Sbjct: 150 DFVRPDGGAERRGFSGWQARIVQHETDHLNGILYVDR 186 >gi|255630300|gb|ACU15506.1| unknown [Glycine max] Length = 221 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDP LR ++ I + + L+ M +VMY TDGIGL+A Q+G+ +L+V + Sbjct: 75 LKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNP 134 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 +V +NP++ +S +++ EGCLS P ADVKR + + N Sbjct: 135 VGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARGINGTMFS 194 Query: 124 IYADGLLATCLQHELDHLN 142 + L A QHE DHL Sbjct: 195 VNLSDLPARIFQHEFDHLQ 213 >gi|310819401|ref|YP_003951759.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|309392473|gb|ADO69932.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + +V +P+LR+ +R + + ++ LI M + M G+GLAA Q+GV RL Sbjct: 1 MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60 Query: 59 VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VV++ + H V INP ++ + EGCLS+ + A V Sbjct: 61 VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R+ + V +D + + A G A LQHE DHL G L++D + Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168 >gi|311257108|ref|XP_003126954.1| PREDICTED: peptide deformylase, mitochondrial-like [Sus scrofa] Length = 249 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E ++ L+ +++VM +GL+A Q+GV +++ ++ Sbjct: 75 QVGDPALRAVAAPVEPAQLAGPELQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 134 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D VF+NP + + EGC S+ + A V R + Sbjct: 135 DALFHACAPRLREIRQMEPFPLHVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 194 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + A G A +QHE+DHL G+LFID + Sbjct: 195 QISGLDPRGEPVVWQASGWAARIIQHEMDHLQGLLFIDKMDS 236 >gi|325261897|ref|ZP_08128635.1| peptide deformylase [Clostridium sp. D5] gi|324033351|gb|EGB94628.1| peptide deformylase [Clostridium sp. D5] Length = 158 Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 6/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + + D IL + + + K+ LI++ML+ MY G+GLAA Q+GVL +V Sbjct: 1 MAIREVRMIGDEILTKQCKEVTKVTLRTKMLIEDMLDTMYEKMGVGLAAPQVGVLKNIVT 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + + + +I + +EGCLS+P V R + VR ++ + + Sbjct: 61 IDVGEG------PIVLINPVIIEASGEQTGEEGCLSVPGKWGIVTRPDHVKVRALNEDME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHL 150 + +GLLA HE+ HL+G L++D + Sbjct: 115 EFEMEGEGLLARAFCHEIAHLSGELYVDRV 144 >gi|46907283|ref|YP_013672.1| peptide deformylase [Listeria monocytogenes str. 4b F2365] gi|47092943|ref|ZP_00230724.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|226223669|ref|YP_002757776.1| formylmethionine deformylase [Listeria monocytogenes Clip81459] gi|254823676|ref|ZP_05228677.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|254853062|ref|ZP_05242410.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|254933401|ref|ZP_05266760.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|254992568|ref|ZP_05274758.1| peptide deformylase [Listeria monocytogenes FSL J2-064] gi|255522443|ref|ZP_05389680.1| peptide deformylase [Listeria monocytogenes FSL J1-175] gi|300765902|ref|ZP_07075875.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|67460118|sp|Q721B5|DEF_LISMF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|259645183|sp|C1L1X2|DEF_LISMC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|46880550|gb|AAT03849.1| peptide deformylase [Listeria monocytogenes serotype 4b str. F2365] gi|47018690|gb|EAL09442.1| polypeptide deformylase [Listeria monocytogenes str. 4b H7858] gi|225876131|emb|CAS04837.1| Putative formylmethionine deformylase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606409|gb|EEW19017.1| polypeptide deformylase [Listeria monocytogenes FSL R2-503] gi|293584962|gb|EFF96994.1| polypeptide deformylase [Listeria monocytogenes HPB2262] gi|293592898|gb|EFG00659.1| polypeptide deformylase [Listeria monocytogenes FSL J1-194] gi|300513364|gb|EFK40438.1| peptide deformylase [Listeria monocytogenes FSL N1-017] gi|328466823|gb|EGF37937.1| peptide deformylase [Listeria monocytogenes 1816] Length = 183 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|169837246|ref|ZP_02870434.1| peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 238 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNML-------EVMYSTDGIGLAAVQIGVLYRL 58 + P+ LR+ S+ I I ++ LI +M E LAAVQ+ L R+ Sbjct: 53 IGPHPNEHLRQKSKKIHVITDEVKKLISDMTSAAIDWEESRPHEISAALAAVQVDKLERI 112 Query: 59 VVID-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 V++ D+ + INP+II + + + EGCLS+ V R + V+ ++ Sbjct: 113 VIVRSEFDNKSNNHFTALINPEIIKYEGEITYDYEGCLSVSKVYGKVPRYNKVRVKALNE 172 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 173 DGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 214 >gi|302529604|ref|ZP_07281946.1| polypeptide deformylase [Streptomyces sp. AA4] gi|302438499|gb|EFL10315.1| polypeptide deformylase [Streptomyces sp. AA4] Length = 218 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 16/161 (9%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR +RP E + + LI+ M E M++ G+GLAA QIG+ R+ V++ Sbjct: 25 PIVQAGDPVLRAAARPYEGELSDDTLSALIEGMKETMHAAPGVGLAAPQIGLSVRIAVVE 84 Query: 63 L--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V +NP D+ + + EGCLS+ ++A V R+ Sbjct: 85 DGARERPGVAESTLATRGIVPLPFRVLVNPTYTRVGDETAAFFEGCLSVRGWQAVVARAL 144 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 I +R D G A +QHE DHL+G+L++D Sbjct: 145 RIRLRGSDETGASLDEELSGWPARIVQHETDHLHGVLYLDR 185 >gi|16800112|ref|NP_470380.1| peptide deformylase [Listeria innocua Clip11262] gi|23396547|sp|Q92CX8|DEF_LISIN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua Clip11262] gi|313619530|gb|EFR91206.1| peptide deformylase [Listeria innocua FSL S4-378] gi|313624273|gb|EFR94321.1| peptide deformylase [Listeria innocua FSL J1-023] Length = 183 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNG++F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINKE 170 >gi|319650481|ref|ZP_08004621.1| Def2 protein [Bacillus sp. 2_A_57_CT2] gi|317397662|gb|EFV78360.1| Def2 protein [Bacillus sp. 2_A_57_CT2] Length = 192 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +V DPILR V++ + + + + M++ + ++ GIGL+ Sbjct: 11 TMKDIVREGDPILREVTKEVTVPLTEEDRGTLIAMMQYLKNSQDPAIAKKYGLRPGIGLS 70 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QIG+ R+ + INPKII+ S + D + V Sbjct: 71 ANQIGLNKRMFTAYFTNEKAEPQEYFVINPKIISHSVGVIFLPEGEGCLSVDRDVKGYVP 130 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R I V+ + + + G+ A +QHE+DHLNGI+F D ++ Sbjct: 131 RYERIKVKAHNLEGEEVTLRFKGIPAIIMQHEIDHLNGIMFYDRINS 177 >gi|54294000|ref|YP_126415.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|53753832|emb|CAH15298.1| hypothetical protein lpl1061 [Legionella pneumophila str. Lens] gi|307609830|emb|CBW99347.1| hypothetical protein LPW_11251 [Legionella pneumophila 130b] Length = 172 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 DPILR+ + PI + +S + LI M +M +G+AA QIG+ R++V Sbjct: 9 DPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTK 68 Query: 68 HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 RK + +I S + EGCL+ + +V R+ I D + Sbjct: 69 RRKPEYPIPDTALINPSLRILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRI 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 129 TKKASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|315302541|ref|ZP_07873376.1| peptide deformylase [Listeria ivanovii FSL F6-596] gi|313629103|gb|EFR97401.1| peptide deformylase [Listeria ivanovii FSL F6-596] Length = 183 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR+V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALRKVASEVTFPLSDEEKKLGREMLEFLINSQDEEVAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D + + G A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDEDGAPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINKE 170 >gi|293608925|ref|ZP_06691228.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829498|gb|EFF87860.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 160 Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 89/160 (55%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ ++NS+ + L D M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A +V +NP+I+ FSD+ + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNLRYPDAPEMEAVVMVNPEILEFSDEVCLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+Y+ + G A +QHE+DHLNGILF++ +S Sbjct: 121 VKYLTLQGETVETIFHGFPARIVQHEVDHLNGILFVERIS 160 >gi|288553244|ref|YP_003425179.1| peptide deformylase [Bacillus pseudofirmus OF4] gi|288544404|gb|ADC48287.1| peptide deformylase [Bacillus pseudofirmus OF4] Length = 179 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K +V P+LR V++ + + + + ML E G+G+A Sbjct: 3 TMKDVVREGHPVLREVAKEVPLPASKEDKETLQRMLDFVINSQDPELSEKYQLRPGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QIG+ R+ + + D M NPKII+ S + + + D V Sbjct: 63 APQIGIAKRMFAVHVADDNDNLYSMGLFNPKIISHSVEETHLESGEGCLSVDRDIPGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 R A ITV+ + + + + GL++ QHE+DHLNGI+F D + K D K++ Sbjct: 123 RYARITVKGTNLDGEEVTLRLRGLVSIVFQHEMDHLNGIMFYDRIEGFK-DPFKKEL 178 >gi|154505954|ref|ZP_02042692.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] gi|153793972|gb|EDN76392.1| hypothetical protein RUMGNA_03496 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + I D IL + +P+ K+ LI++ML+ MY G+GLAA Q+GVL ++VV Sbjct: 1 MAIREVRIMGDDILEKQCKPVTKMTMRTKILIEDMLDTMYEKYGVGLAAPQVGVLKQIVV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ + I +EGCLS+P V R ++ VR ++ + Sbjct: 61 IDVGEGPIVLINPEIIETSGE------QTGEEGCLSLPGKWGIVTRPNYVKVRALNEEME 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +GLLA HE+DHL G ++++ + Sbjct: 115 EVELEGEGLLARAFCHEIDHLAGHMYVERVED 146 >gi|117165081|emb|CAJ88634.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC 23877] Length = 214 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + + ++ + M + G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRRPAEPFDGQLEPALLARFVEALRLTMRAAPGVGLAAPQVGVGLRIAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGPGRAAFYEGCLSVPGWQAVVARHAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + + +G A +QHE DHL+G+L++D Sbjct: 144 LVARDEHGRAVDEVFEGWPARIVQHETDHLDGVLYLDR 181 >gi|52841298|ref|YP_095097.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148360273|ref|YP_001251480.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106683|ref|YP_003618383.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|52628409|gb|AAU27150.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282046|gb|ABQ56134.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648584|gb|ADG24431.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 172 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 8/150 (5%) Query: 11 DPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 +PILR+ + PI + +S + LI M +M +G+AA QIG+ R++V Sbjct: 9 NPILRQTADPISESEFGSSWLKELIKTMFGIMADKGAVGVAAPQIGISKRVIVFGTDYTK 68 Query: 68 HRKNPMVFINPKIIT-----FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 RK + +I S + EGCL+ + +V R+ I D + Sbjct: 69 RRKPEYPIPDTALINPSLKILSQEIQTGYEGCLNCGELMGEVPRAMEIEYSGFDIDGNRI 128 Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSR 152 A GL A LQHE+DHL+G LF+D + Sbjct: 129 TKKASGLEARILQHEIDHLDGFLFLDRVED 158 >gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool] Length = 374 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 2/151 (1%) Query: 3 KKPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 KK +++ P P+LR S P + + + + + +MY GIGLAA Q+G+ +++V Sbjct: 223 KKEVLVAPHPLLRLPSHPEADWMAKETKAIARELFAIMYRDGGIGLAAPQVGLSLQMIVW 282 Query: 62 DLQDHAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + VF+NP+I++ S EGCLS+P A V+R VRY Sbjct: 283 NPTGGFREVSQERVFLNPRILSLSGPLVSDVEGCLSVPGVFAPVERPMHARVRYTSLEGD 342 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + GL A +QHE+DHL+GILF+D Sbjct: 343 QHEVNLSGLEARVVQHEIDHLHGILFVDRAK 373 >gi|195444657|ref|XP_002069968.1| GK11287 [Drosophila willistoni] gi|194166053|gb|EDW80954.1| GK11287 [Drosophila willistoni] Length = 241 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 56 QVGDPVLRQQAALVPPEHLDSPEIKAIVEQMIKVLRKYNCVGIAAPQIGVSLRIIAMEFK 115 Query: 65 DHAHRKNPMVFINPKIITFSDDFS--------------VYQEGCLSIPDYRADVKRSAFI 110 ++ P ++++ + EGC+S+ Y +V+R + Sbjct: 116 KEIRKELPEFTYQARLMSELPLTVLINPELTVTSYVKLKHPEGCMSVRGYSGEVERYEAV 175 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D I G A QHE+DHL+G L+ D + R Sbjct: 176 NLNGHDRLGVKTQISLTGWNARIAQHEMDHLDGKLYTDRMDR 217 >gi|329938533|ref|ZP_08287958.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] gi|329302506|gb|EGG46397.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045] Length = 218 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 12/161 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P E + + + M++ G+GLAA Q+GV R+ VI Sbjct: 27 LPIVAAGDPVLRRGAEPFEGQLDAPLLDRFLAALRATMHAAPGVGLAAPQVGVPLRIAVI 86 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP ++ + + EGCLS+P ++A V R A + Sbjct: 87 EDPAPVPEEVRSARGRVPQPYRVLVNPSYEAVGEERAAFFEGCLSVPGWQAVVARHARVR 146 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R +D G A +QHE DHL+G L++D Sbjct: 147 LRGLDARGAVLDEEFAGWPARIVQHETDHLDGTLYLDRAEP 187 >gi|315281776|ref|ZP_07870335.1| peptide deformylase [Listeria marthii FSL S4-120] gi|313614586|gb|EFR88171.1| peptide deformylase [Listeria marthii FSL S4-120] Length = 183 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|226952063|ref|ZP_03822527.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] gi|226837220|gb|EEH69603.1| N-formylmethionyl-tRNA deformylase [Acinetobacter sp. ATCC 27244] Length = 163 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL + + + NS+ ++ L M M +G+G+AA Q+ + Sbjct: 3 MSVVLPVAQRGEEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISK 62 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS + +EGCLS+PD R V+R+ I Sbjct: 63 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQTTCLGEEGCLSVPDQRGFVERAQTIK 122 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 VRY + +G A +QHE+DHL+G+LF++ +S Sbjct: 123 VRYYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162 >gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG6] gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6] Length = 185 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 16/177 (9%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M + ++ +P L+ RP++ + ++ L+ +M E M + G+GLAA Q+G+ Sbjct: 1 MSTRRILRIDNPEDKKTLKMQCRPVKLPDRNLKQLVADMFETMRKSHGVGLAAPQVGLPI 60 Query: 57 RLVVIDLQDHAHRKN-----------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 +L +I++ +++ V INP+I+ S D + EGCLS+P + V Sbjct: 61 QLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKTSGDEIMRDEGCLSLPGWYGMVP 120 Query: 106 RSAFITVRYMDCNAQHQII-YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 R +++TV Y D N + + ADGLL +QHE+DHL+G+LF + + L K Sbjct: 121 RHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLHGVLFTERIRDLSTLRDVSK 177 >gi|115378396|ref|ZP_01465558.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] gi|115364586|gb|EAU63659.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1] Length = 188 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + +V +P+LR+ +R + + ++ LI M + M G+GLAA Q+GV RL Sbjct: 1 MVLKIVQAGEPVLRQRARELTPEEISSPEVKQLIQLMRDTMRDAPGVGLAAPQVGVGLRL 60 Query: 59 VVIDLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 VV++ + H V INP ++ + EGCLS+ + A V Sbjct: 61 VVVEDRAEYHVGIKPEDLSARERQPVDFHVLINPTLVVEDPALVEFHEGCLSVAGFSALV 120 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R+ + V +D + + A G A LQHE DHL G L++D + Sbjct: 121 PRARGVRVEALDEHGAPVTLVAKGWYARILQHEFDHLEGRLYLDRMEP 168 >gi|269796214|ref|YP_003315669.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] gi|269098399|gb|ACZ22835.1| N-formylmethionyl-tRNA deformylase [Sanguibacter keddieii DSM 10542] Length = 211 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LR+ + + ++ + L+D+M M G+GLAA QIG+ ++ V+ Sbjct: 22 VLPIVQAGHPVLRQPAAAYDGQLGDLLPALLDSMRLTMVDAPGVGLAAPQIGIGLQIAVL 81 Query: 62 DLQDHAHRKNPMV--------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++P +NP D+ + EGCLS+ Y+A V R + + Sbjct: 82 HDAGSTDPEDPRERTPLEHRVLVNPSYEGVGDEVRSFYEGCLSVEGYQAVVARHRTVRLT 141 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D + G A +QHE DHL G L+IDH Sbjct: 142 GQDETGRALDEQLTGWPARIVQHETDHLRGQLYIDH 177 >gi|294498110|ref|YP_003561810.1| peptide deformylase [Bacillus megaterium QM B1551] gi|295703459|ref|YP_003596534.1| peptide deformylase [Bacillus megaterium DSM 319] gi|294348047|gb|ADE68376.1| peptide deformylase [Bacillus megaterium QM B1551] gi|294801118|gb|ADF38184.1| peptide deformylase [Bacillus megaterium DSM 319] Length = 184 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ P LR V++ + + + ++ ++LE + ++ IGLAA Q Sbjct: 6 DIIQDGHPTLREVAKEVPLPASEEDKKILHSLLEYVKNSQDPEIAAKYGLRSGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 I V R++ + + D + NPKII+ S + + + D V R A Sbjct: 66 INVSKRMIGVHVTDEKGKLYSYALFNPKIISHSVEKTYLTGGEGCLSVDQDIPGFVPRYA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ITV+ + I GL A QHE+DHL+GI+F D++++ Sbjct: 126 RITVKGTTLEGEEVKIRLKGLPAVVFQHEIDHLDGIMFYDYINKE 170 >gi|320104581|ref|YP_004180172.1| peptide deformylase [Isosphaera pallida ATCC 43644] gi|319751863|gb|ADV63623.1| peptide deformylase [Isosphaera pallida ATCC 43644] Length = 230 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 8/154 (5%) Query: 4 KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL-- 58 +P++ P LR+ +R +E LI +M + + G+GLA QIGV R+ Sbjct: 20 RPILWLGHPALRQTARVVEPSQLKTDAFRRLIGDMAQTLEDEGGVGLAGPQIGVDQRVIL 79 Query: 59 ---VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + FINP I+ S EGCLSIP A V R + + Y+ Sbjct: 80 AGAFPSERDPSRPNHPVRAFINPVIVARSSQVGAAYEGCLSIPGILARVVRPHAVEIEYL 139 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D NA + + A+G LA LQHE+DHL+G+L +DH Sbjct: 140 DLNAMPRRLRAEGFLARVLQHEIDHLDGVLIVDH 173 >gi|289434312|ref|YP_003464184.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170556|emb|CBH27096.1| polypeptide deformylase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633912|gb|EFS00628.1| peptide deformylase [Listeria seeligeri FSL N1-067] Length = 183 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + G A +QHE+DHLNGI+F DH++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHINSE 170 >gi|119910219|ref|XP_001255524.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|119936845|ref|XP_001251630.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|297485396|ref|XP_002694953.1| PREDICTED: peptide deformylase-like [Bos taurus] gi|296478169|gb|DAA20284.1| peptide deformylase-like [Bos taurus] Length = 250 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E ++ L++ +++VM +GL+A Q+GV +++ ++ Sbjct: 76 QVGDPALRAVAAPVEPAQLAGPELQRLVERLVQVMRRRHCVGLSAPQLGVPLQVLALEFP 135 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + VF+NP + + EGC S+ + A V R + Sbjct: 136 ETLFRACAPRVREARQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 195 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + A G A +QHE+DHL G LFID + Sbjct: 196 QISGLDPRGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 237 >gi|325955362|ref|YP_004239022.1| peptide deformylase [Weeksella virosa DSM 16922] gi|323437980|gb|ADX68444.1| Peptide deformylase [Weeksella virosa DSM 16922] Length = 223 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 55/150 (36%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRK 70 ILR S ++ +S + L D ML + + G +AA QIG+ V I D + Sbjct: 61 ILRTKSIDLDPTDSSVKKLADRMLATVLDEETRGVGIAAPQIGINRNAVWIQRFDQKDQP 120 Query: 71 NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL 130 FINPKI +S +EGCLSIPD +V RS I + + D + Q +G Sbjct: 121 F-QFFINPKITWYSSLLQKGREGCLSIPDTIGNVVRSYAIRIEFYDLDGQFHDEVIEGFT 179 Query: 131 ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A QHE+DHLNG+LF D L ++ TK Sbjct: 180 AVIAQHEVDHLNGVLFTDRLQEQEKTTYTK 209 >gi|83855042|ref|ZP_00948572.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] gi|83842885|gb|EAP82052.1| peptide deformylase [Sulfitobacter sp. NAS-14.1] Length = 145 Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 2/144 (1%) Query: 23 KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82 +IN +I L D+M++ M + G+GLAA QIGV ++ V+D R + NP +I Sbjct: 3 EINDEIRALWDDMIDTMDAMPGVGLAAPQIGVSLQVAVVDA--SQARDKRIRLANPVVID 60 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 S + Y+E ++P A ++R + VRY+D GL AT +QH++DHL Sbjct: 61 ASAIMNEYEEASPNLPGISAKIRRPRGVKVRYLDEQGATVTRDFVGLEATSVQHQIDHLA 120 Query: 143 GILFIDHLSRLKRDMITKKMSKLV 166 G +F+D+LS+ +RDM+ +K K Sbjct: 121 GKMFVDNLSKTRRDMLLRKARKYK 144 >gi|327287510|ref|XP_003228472.1| PREDICTED: peptide deformylase, mitochondrial-like [Anolis carolinensis] Length = 236 Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR ++ P+E D+ LI ++ +M + L+A Q+G+ ++ V + Sbjct: 62 QVGDPVLRSLAAPVEPSQVTGKDVQALIQRLVRLMRRERCVALSAPQVGIPLQVFVAEYP 121 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++P FINP + + EGC S+ + A V R + Sbjct: 122 TRLLEEHPPDVRQARQMAPFPLRVFINPTMRVLDSQVVSHPEGCRSVHGFSACVPRFLAV 181 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V ++ + A G A +QHE+DHL GIL++D + Sbjct: 182 QVAGLNEAGEESSWEACGWAARIVQHEMDHLQGILYVDRMES 223 >gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 192 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 1/161 (0%) Query: 6 LVIFPDPILRRV-SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + +P P LRRV + PI + + ML +MY + G+GLAA QIG+ + V + Sbjct: 15 ITEYPRPALRRVPNTPISQFDDAFQTKAKEMLMIMYESKGVGLAAPQIGLNENVFVYNPS 74 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 D + + + + + + V RSA+I Y + Q Sbjct: 75 DSKNMERIVCNPKITKYSEEVIVEQEGCLSMRSDEVAGQVARSAWIECEYENEEGQKVRR 134 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A QHE DHL GIL D R+ + ++ L Sbjct: 135 RLKDFEARVFQHEYDHLKGILCYDRFPPEDREAAQENINTL 175 >gi|313638473|gb|EFS03653.1| peptide deformylase [Listeria seeligeri FSL S4-171] Length = 183 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGREMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +T+ D N + G A +QHE+DHLNGI+F DH++ Sbjct: 126 RVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGIMFYDHIN 168 >gi|113971372|ref|YP_735165.1| peptide deformylase [Shewanella sp. MR-4] gi|113886056|gb|ABI40108.1| peptide deformylase [Shewanella sp. MR-4] Length = 181 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 6/163 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ Sbjct: 14 LPIAVVGEAILKEQAVEVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMAS 73 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + A +P+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 74 RPNERYPDAPLMDPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLA 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160 Q Q G +A QHE DHL GI ++ ++ M + Sbjct: 134 GQWQRSELTGFIARIFQHEFDHLQGITLLERSQMPEQKHMALE 176 >gi|253577418|ref|ZP_04854734.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843218|gb|EES71250.1| polypeptide deformylase [Paenibacillus sp. oral taxon 786 str. D14] Length = 193 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 +V DPILR V+ P+ + + ML+ + ++ +GL+A Q Sbjct: 14 DIVREGDPILRVVTEPVSIPPTEEDREEMAAMLQFLKNSQDPEMSKKYKLRAGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 IG+ R+ L D + P+ NPKII+ S + + + V R Sbjct: 74 IGLNKRMFAALLMDENGKDRPLALYNPKIISHSQAMTYLPESEGCLSVDRTVQGFVPRYE 133 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V+ D + G A +QHE+DHLNGI+F DH++ Sbjct: 134 KVQVKAYDDEGNEIKLRFKGFDAIVMQHEIDHLNGIMFYDHINPE 178 >gi|325283926|ref|YP_004256467.1| Peptide deformylase [Deinococcus proteolyticus MRP] gi|324315735|gb|ADY26850.1| Peptide deformylase [Deinococcus proteolyticus MRP] Length = 220 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 24/172 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DP+LRR +RP++ + + + D MLE M++ G+GLAA Q+G Sbjct: 7 IYPIRLYGDPVLRRKARPLQHTDTLQVPGFAPQTLREVADTMLETMFAARGVGLAAPQVG 66 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98 + R+ V D +N K I D S + Sbjct: 67 LGVRMFVAVEYDDNEEENEGKETPLKSRVLREYVMLNPKLTVINKKKDKSETEGCLSIPD 126 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 Y V R+ + V Y D Q Q + A+ LA QHE DHL+G LF+DHL Sbjct: 127 IYEEGVPRARAVRVDYTDLEGQAQTVEAEDYLARVFQHENDHLDGKLFLDHL 178 >gi|269955472|ref|YP_003325261.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894] gi|269304153|gb|ACZ29703.1| Peptide deformylase [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 14/164 (8%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LR + P ++ + L + M M++ G+GLAA Q+G+ L V+ Sbjct: 29 VLPIVQSGDPVLRTPAAPYTGQLGDLLPRLAEVMRRTMHAAPGVGLAAPQVGIGLALAVV 88 Query: 62 DLQDHAHRKNPMV------FINPKIITFSD-------DFSVYQEGCLSIPDYRADVKRSA 108 + + + NP ++ + EGCLSI + A V R Sbjct: 89 EDRGNESDPRERTPLPFRLLANPAYEPVAEEGPSGTLRRVPFFEGCLSIDGWHALVARHH 148 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D + G A +QHE DHL G L++DH Sbjct: 149 RVRLTGQDADGAPIDEVLTGWPARIIQHETDHLRGELYLDHAVP 192 >gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49] gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG] gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii] Length = 353 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 2/154 (1%) Query: 4 KPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ P +LR + P + + L ++L VMY G+GLAA Q+GV +++V + Sbjct: 185 LDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWN 244 Query: 63 LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 VF+NP++++ EGCLS+P A V+R VRY Sbjct: 245 PTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQ 304 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 + GL A +QHE+DHL+GILF+D + R +R Sbjct: 305 REATLSGLEARVVQHEIDHLHGILFVDRVHRGER 338 >gi|291435575|ref|ZP_06574965.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] gi|291338470|gb|EFE65426.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 214 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + +NP + + EGCLS+P Y+A V R A + Sbjct: 84 EDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D + + G A +QHE+DHL+G+L++D Sbjct: 144 LTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 184 >gi|239927233|ref|ZP_04684186.1| peptide deformylase [Streptomyces ghanaensis ATCC 14672] Length = 205 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 15 LPIVAAGDPVLRRGAEPFDGQLEPALLARFVEALRITMHAAPGVGLAAPQVGVALRIAVI 74 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + +NP + + EGCLS+P Y+A V R A + Sbjct: 75 EDPAPVPEEVRRARGRVPQPFRALVNPSYEPVGAGRAAFFEGCLSVPGYQAVVARPAEVR 134 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D + + G A +QHE+DHL+G+L++D Sbjct: 135 LTGQDEHGRALDEVFTGWPARIVQHEIDHLDGVLYLDRAEP 175 >gi|217964856|ref|YP_002350534.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290893798|ref|ZP_06556777.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|254767592|sp|B8DCF7|DEF_LISMH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|217334126|gb|ACK39920.1| peptide deformylase [Listeria monocytogenes HCC23] gi|290556625|gb|EFD90160.1| polypeptide deformylase [Listeria monocytogenes FSL J2-071] gi|307570585|emb|CAR83764.1| polypeptide deformylase [Listeria monocytogenes L99] gi|313609509|gb|EFR85061.1| peptide deformylase [Listeria monocytogenes FSL F2-208] Length = 183 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEEMAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R + I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGTPLKLRFKDYPAIVIQHEIDHLNGIMFYDHINKE 170 >gi|229086539|ref|ZP_04218711.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] gi|228696856|gb|EEL49669.1| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock3-44] Length = 184 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + S+ + +I+ M+E GIG+AA Q Sbjct: 6 DVIREGNPILRAVAEEVPLPASEADLRTLKEMIEFVINSQNPEMVEKYNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 IG+ R++ + + D NPKII+ S + + + + V R Sbjct: 66 IGISKRMIAVHVTDANETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168 >gi|117919351|ref|YP_868543.1| peptide deformylase [Shewanella sp. ANA-3] gi|117611683|gb|ABK47137.1| peptide deformylase [Shewanella sp. ANA-3] Length = 176 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 6/163 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P+ + + IL++ + + + + +L M+ M G+G+AA Q+ L ++ Sbjct: 14 LPIALVGEAILKQQADEVRDFDEKLSHLASQMVASMVEAKGVGIAAPQVHSPLALFIMAS 73 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + A +P+V +NP+I++ S + +EGCLS+P R + R I VRY D Sbjct: 74 RPNERYPDAPLMDPVVVVNPQILSASAELVSGEEGCLSVPGQRFSIWRHQTIVVRYQDLA 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160 Q G +A QHE DHL GI ++ ++ M + Sbjct: 134 GHWQQTELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMARR 176 >gi|321315214|ref|YP_004207501.1| peptide deformylase [Bacillus subtilis BSn5] gi|320021488|gb|ADV96474.1| peptide deformylase [Bacillus subtilis BSn5] Length = 184 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 +V P LR + P+E + +M+E G+GLAA QI Sbjct: 7 IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ + +D + + NPKI++ S + S + V R + Sbjct: 67 NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYSR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|52785431|ref|YP_091260.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|319646166|ref|ZP_08000396.1| peptide deformylase [Bacillus sp. BT1B_CT2] gi|52347933|gb|AAU40567.1| YkrB [Bacillus licheniformis ATCC 14580] gi|317391916|gb|EFV72713.1| peptide deformylase [Bacillus sp. BT1B_CT2] Length = 185 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V P LR V+ ++ + + + + M+E + ++ G+GLAA QI Sbjct: 8 IVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLAAPQI 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ + + NPKI++ S + V R Sbjct: 68 NINKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVPRYER 127 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 128 IRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 171 >gi|296111965|ref|YP_003622347.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] gi|295833497|gb|ADG41378.1| peptide deformylase [Leuconostoc kimchii IMSNU 11154] Length = 192 Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + DP+LR++++P+ ++ + L +M+ E Sbjct: 1 MTIRFTMDKITRDGDPVLRQIAQPVPFPLSEEHAQLAKDMMTYLVISQDATQNETYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94 G+GLAA Q+G ++ + + NP II+ V + Sbjct: 61 GVGLAAPQVGYSLQMAAVLVPSLDPHESDDTPYFKGTIFNPTIISESVKRGALDVGEGCL 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ +TVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 121 SVDEDVPGFVPRANRVTVRYQDEIGDTKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177 >gi|289677568|ref|ZP_06498458.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 121 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 AA Q+ V R+VV+DL + PMV INP+I +D+ YQEGCLS+P + +V R Sbjct: 1 AATQVNVHKRVVVMDLSEDRSE--PMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRP 58 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K + Sbjct: 59 QKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHK 118 Query: 168 L 168 L Sbjct: 119 L 119 >gi|52080056|ref|YP_078847.1| peptide deformylase [Bacillus licheniformis ATCC 14580] gi|52003267|gb|AAU23209.1| main formylmethionine deformylase [Bacillus licheniformis ATCC 14580] Length = 184 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V P LR V+ ++ + + + + M+E + ++ G+GLAA QI Sbjct: 7 IVRDGHPALRTVAEEVQLPASEEEIKQLSEMIEFVKNSQDPEIAKKYNLRPGVGLAAPQI 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ + + NPKI++ S + V R Sbjct: 67 NINKRMIAVHAESEDGTLYSYALFNPKIVSHSVQRCYLTSGEGCLSVDEPIPGYVPRYER 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ ++ I G A QHE+DHLNGI+F DH+ + Sbjct: 127 IRVKGTTLEGENIDIRLKGYPAIVFQHEIDHLNGIMFYDHIDKE 170 >gi|16078520|ref|NP_389339.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221309325|ref|ZP_03591172.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. 168] gi|221313652|ref|ZP_03595457.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318574|ref|ZP_03599868.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322848|ref|ZP_03604142.1| peptide deformylase [Bacillus subtilis subsp. subtilis str. SMY] gi|6225248|sp|Q45495|DEF2_BACSU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|2633827|emb|CAB13329.1| formylmethionine deformylase A [Bacillus subtilis subsp. subtilis str. 168] gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis] gi|291483999|dbj|BAI85074.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195] Length = 184 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 +V P LR + P+E + +M+E G+GLAA QI Sbjct: 7 IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ + +D + + NPKI++ S + S + V R A Sbjct: 67 NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|37521298|ref|NP_924675.1| peptide deformylase [Gloeobacter violaceus PCC 7421] gi|35212295|dbj|BAC89670.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421] Length = 275 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +V DP+LR ++P+ E + I LI M E M G+GLAA Q+GV +LV Sbjct: 93 VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 152 Query: 60 VIDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 VI+ + V INP + ++ +V+ EGCLSIP Y+ V Sbjct: 153 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 212 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 213 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 258 >gi|283456600|ref|YP_003361164.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] gi|283103234|gb|ADB10340.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium dentium Bd1] Length = 218 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + E + LID M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A V INP + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 185 >gi|39930960|sp|Q7NJV3|DEF1_GLOVI RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 Length = 227 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 +V DP+LR ++P+ E + I LI M E M G+GLAA Q+GV +LV Sbjct: 45 VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 104 Query: 60 VIDLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 VI+ + V INP + ++ +V+ EGCLSIP Y+ V Sbjct: 105 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 164 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ + V +D A +I A G A LQHE+DHLNG+L +D + Sbjct: 165 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMD 210 >gi|294651129|ref|ZP_06728464.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] gi|292822961|gb|EFF81829.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194] Length = 163 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 9/160 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPIE--KINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ IL + + + NS+ ++ L M M +G+G+AA Q+ + Sbjct: 3 MSVVLPVAQRGKEILELKAAFVADGEFNSEWLLQLASAMHATMLERNGVGIAAPQVYISK 62 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS + +EGCLS+PD R V+R+ I Sbjct: 63 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSQQTCLGEEGCLSVPDQRGVVERAQTIK 122 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 VRY + +G A +QHE+DHL+G+LF++ +S Sbjct: 123 VRYYTLQGEVVETTFEGFPARIVQHEVDHLDGVLFVERMS 162 >gi|73957448|ref|XP_853641.1| PREDICTED: similar to peptide deformylase-like protein [Canis familiaris] Length = 242 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR V+ P+E + L+ +++VM +GL+A Q+GV +++ + Sbjct: 68 QVGDPALRTVAAPVEPAQLAGPQLQRLVQRLVQVMRRRHCVGLSAPQLGVPLQVLAFEFP 127 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + V +NP + + EGC S+ + A V R + Sbjct: 128 EALFRACAPRLRETRQMEPFPLRVVVNPSLRVLDSRRVTFPEGCESVAGFLACVPRFQAV 187 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + A G A +QHE+DHL G LFID + Sbjct: 188 QISGLDPKGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 229 >gi|225387512|ref|ZP_03757276.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] gi|225046442|gb|EEG56688.1| hypothetical protein CLOSTASPAR_01265 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M + + D LR+ + ++ ++ + L+D+M++ ++ + LAA Q+G+L RLV Sbjct: 1 MAVRTIRTEGDEALRKRCKEVKNVDERVRALLDDMMDTLHATEGAAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + V + + EGCLS P A R +TV+ +D N Sbjct: 61 VIDYCGCVLKLVNPVIVGRDGV------QECLEGCLSFPGRIATTIRPQSVTVQALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + ++ +G +A C HEL+HL+G +F+D Sbjct: 115 KEVLLTGEGEMAKCYCHELEHLDGEVFLDR 144 >gi|299771142|ref|YP_003733168.1| peptide deformylase [Acinetobacter sp. DR1] gi|298701230|gb|ADI91795.1| peptide deformylase [Acinetobacter sp. DR1] Length = 160 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 9/159 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ E + + L M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSANELNSDWLYQLAAAMQATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS++ + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSNETLLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V+Y+ + G A +QHE+DHLNG+LF++ + Sbjct: 121 VKYLTLQGEAVETVFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|254449483|ref|ZP_05062920.1| peptide deformylase [Octadecabacter antarcticus 238] gi|198263889|gb|EDY88159.1| peptide deformylase [Octadecabacter antarcticus 238] Length = 144 Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 77/138 (55%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 E + D++ LID++ + MY G GLAA QIGV R+ V+D+ ++P FINP+I Sbjct: 2 ELDDPDLVGLIDDLFDTMYHAKGRGLAAPQIGVTKRVFVVDVTWKEGTRDPRAFINPQIT 61 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHL 141 + D + E CLSIPD V R I +R+ + + DG+LA C+QHELDHL Sbjct: 62 ETAGDMLIMNEQCLSIPDIPMPVARPERIQLRWTRRDGGLETAVFDGILARCIQHELDHL 121 Query: 142 NGILFIDHLSRLKRDMIT 159 NG + DH + R + Sbjct: 122 NGTVIFDHQTPEMRTELE 139 >gi|306822240|ref|ZP_07455622.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802249|ref|ZP_07696357.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|304554622|gb|EFM42527.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308221132|gb|EFO77436.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 242 Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + E + LID M M G+GLAA QIG+ L V Sbjct: 52 LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 111 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A V INP + EGCLS Y+A KR IT Sbjct: 112 VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D + + G A QHE DHL+G L+ID Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 209 >gi|194741018|ref|XP_001952986.1| GF17443 [Drosophila ananassae] gi|190626045|gb|EDV41569.1| GF17443 [Drosophila ananassae] Length = 196 Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + + +I ++D M++V+ D +G+AA QIG+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPEERIDSPEIDQIVDRMVKVLRHYDCVGVAAPQIGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + NP++ S + + EGC+S+ Y A+V R + Sbjct: 71 EGKREQYKPEIYEERKMSTLPLAVFVNPELEIVSGQINKHPEGCMSVRGYSAEVGRFDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 VR + + +G A QHE DHLNG +++D + Sbjct: 131 RVRGVGKLGTPSEMELEGWNARIAQHETDHLNGCIYVDRMD 171 >gi|238061428|ref|ZP_04606137.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] gi|237883239|gb|EEP72067.1| formylmethionine deformylase [Micromonospora sp. ATCC 39149] Length = 186 Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61 +P+V PDP+L R ++ + ++ L +++ M + +GLAA Q+GV ++ + Sbjct: 22 VRPVVSAPDPVLSRPGPEVDPTSDEVARLAADLIATMRVSPGCVGLAAPQVGVSAQVFAV 81 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118 D+ A + + + + +EGC+S+PD DVKR++ + V + + Sbjct: 82 DVTGHPKAVTVHGTFVLCNARVVEGSRWKSGREGCMSVPDLTGDVKRASRLVVEGLLPGS 141 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + DG A LQHE+DH G+LF+D + Sbjct: 142 GAPVRLVTDGFEARALQHEIDHCLGLLFLDRV 173 >gi|195389909|ref|XP_002053614.1| GJ23992 [Drosophila virilis] gi|194151700|gb|EDW67134.1| GJ23992 [Drosophila virilis] Length = 203 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + + + +I +++D M++V+ D +G+AA Q+GV R++V++ + Sbjct: 18 QIGDPVLRVRAEEVPPERLDSHEINDIVDQMVKVLRHYDCVGVAAPQLGVPLRIIVMEFR 77 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + VFINPKI +D + EGC+S+ + V R + Sbjct: 78 EGKRAQFTAEDYEQRKMSPLPLSVFINPKIEIITDAQHTHPEGCMSVRGFSGQVARYDRV 137 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V + + G A QHE+DHLNGI+++D + Sbjct: 138 RVTGIGMLGTPSELELVGWSARIAQHEMDHLNGIIYVDRMD 178 >gi|212716218|ref|ZP_03324346.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] gi|212660730|gb|EEB21305.1| hypothetical protein BIFCAT_01134 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 70/158 (44%), Gaps = 11/158 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + E + LI+ M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A V INP + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D + + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDK 185 >gi|226729275|sp|B6RGY0|DEF1A_ORYSJ RecName: Full=Peptide deformylase 1A, chloroplastic; Short=OsPDF1A; Short=PDF 1A; Flags: Precursor gi|164633052|gb|ABY64739.1| peptide deformylase 1A [Oryza sativa Japonica Group] Length = 260 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 1 MVKKP-LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P V DP+L ++ + + + +ID M+ VM G+GLAA QIGV Sbjct: 68 MTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPL 127 Query: 57 RLVVIDLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102 +++V++ P INPK+ T S +++ EGCLS+ YRA Sbjct: 128 KIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGYRA 187 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+R + V +D N + + A G A LQHE DHL G L++D + Sbjct: 188 LVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMVP 237 >gi|167462507|ref|ZP_02327596.1| Def2 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383825|ref|ZP_08057572.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151641|gb|EFX44714.1| peptide deformylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 195 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V DPILR V++P+ + + + ML E G+GL+A Q Sbjct: 14 DIVREGDPILREVTQPVHVPPSEEDRETLCCMLQFLKNSQDPELAEKYQLRGGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVKRSA 108 IG+ R+ LQD + + + +NP+II+ + V R Sbjct: 74 IGLNKRMFAAYLQDEQGKTHEYMVVNPQIISHSAAMTYLDQGEGCLSVDRPVPGFVPRYE 133 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ D N + ++ G ++ QHE+DHLNGI+F DH+ + Sbjct: 134 RIKVKAYDINGEEVVLRLKGYVSIVFQHEMDHLNGIMFYDHIDK 177 >gi|116872445|ref|YP_849226.1| peptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466166|sp|A0AHG3|DEF_LISW6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116741323|emb|CAK20445.1| polypeptide deformylase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 183 Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 16/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 +V P LR V+ + ++ + L +MLE + ++ G+G+AA Q Sbjct: 6 DIVREGHPALREVASEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + V R++ I + D R V NPKI + S + + + V RS Sbjct: 66 LAVTKRILAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSE 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +T+ D N + A +QHE+DHLNGI+F DH+++ Sbjct: 126 RVTIDAFDENGIPLKLRFKDYPAIVVQHEIDHLNGIMFYDHINKE 170 >gi|327441213|dbj|BAK17578.1| N-formylmethionyl-tRNA deformylase [Solibacillus silvestris StLB046] Length = 185 Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52 ++ P LR + + ++++ L D+ML E GIGLAA Q+ Sbjct: 7 IIREGHPTLRTRAEEVTFPLSAEDRKLADDMLQYLINSQNPEIAEKYNLRGGIGLAANQV 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY---QEGCLSIPDYRADVKRSAF 109 L R+ + L+D V +NPKI++ S + + + V R A Sbjct: 67 NSLKRMFALHLEDENGELISFVAVNPKIVSHSVEQTYITSGEGCLSVDRAIPGYVYRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV++M + + + + GL A QHELDHLNG++F D + Sbjct: 127 ITVKFMTVDGEEKKMRLSGLPAIAFQHELDHLNGVMFYDRID 168 >gi|295397404|ref|ZP_06807493.1| peptide deformylase [Aerococcus viridans ATCC 11563] gi|294974368|gb|EFG50106.1| peptide deformylase [Aerococcus viridans ATCC 11563] Length = 205 Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR+ + I ++ +I L D+M+E + ++ G+G+AA Q Sbjct: 21 DIIREGHPTLRKKAEKITFPVSEEIRQLADDMMEFLRNSQDEELAEKYGLRGGVGIAAPQ 80 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL--------SIPDYRAD 103 + V ++ + + D +N +N + + CL D Sbjct: 81 LDVSIQMTALLVPDLMDPENAEPLLNGVFLNPRVVSHSVEGVCLREGEGCLSVDRDVPGY 140 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A ITV Y D + G A LQHE+DHLNGI+F DH+S Sbjct: 141 VPRHARITVTYNDIDGNEYKKRFSGYPAIVLQHEIDHLNGIMFYDHIS 188 >gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1] Length = 353 Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 4 KPLVIFPDPILRRVSRP-IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 ++ P +LR + P + + L ++L VMY G+GLAA Q+GV +++V + Sbjct: 185 LDVLAAPHTLLRLPAHPEADWQAKETKELAKDLLAVMYRDGGVGLAAPQVGVSVQMIVWN 244 Query: 63 LQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 VF+NP++++ EGCLS+P A V+R VRY Sbjct: 245 PTGDVRESSRERVFLNPRLLSLYGPLVSDVEGCLSVPGVFAPVERPLHARVRYTSLEGIQ 304 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + GL A +QHE+DHL+GILF+D + R Sbjct: 305 REVTLSGLEARVVQHEIDHLHGILFVDRVHR 335 >gi|296231447|ref|XP_002761154.1| PREDICTED: peptide deformylase, mitochondrial-like [Callithrix jacchus] Length = 243 Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L+ +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVEREQLGGPELQRLVQRLVQVMRRQHCVGLSAPQLGVPRQVLALELT 128 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +K P F+NP + + EGC S+ + A V R + Sbjct: 129 QALCQKTPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++ N + + A G A +QHE+DHL G LFID + Sbjct: 189 EISGLNPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230 >gi|171742295|ref|ZP_02918102.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] gi|171277909|gb|EDT45570.1| hypothetical protein BIFDEN_01401 [Bifidobacterium dentium ATCC 27678] Length = 242 Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 11/158 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + E + LID M M G+GLAA QIG+ L V Sbjct: 52 LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIDTMHVTMLEAPGVGLAATQIGLGLALAV 111 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A V INP + EGCLS Y+A KR IT Sbjct: 112 VEDHVRDGDDGDPREAAEFPFHVIINPSYEPIGTQTRSFYEGCLSFDGYQAVRKRWLDIT 171 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D + + G A QHE DHL+G L+ID Sbjct: 172 ARWQDEDGNRHEEHLHGWPARIFQHETDHLSGELYIDK 209 >gi|314933389|ref|ZP_07840754.1| peptide deformylase [Staphylococcus caprae C87] gi|313653539|gb|EFS17296.1| peptide deformylase [Staphylococcus caprae C87] Length = 162 Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL++ + + + + + +L+ ++ + +Y+ + ++A QIGV R+ + Sbjct: 1 MTVKKLVKSTHPILKKEIKTVNQYDDQLKSLLQDLEDTLYAEEAAAISAPQIGVNQRVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + INP I + SD+ EG +++P+ +V RS I V+ D N Sbjct: 61 I----DMELEGLLQLINPVIKSHSDEEITDLEGSITLPNIFGEVTRSKMIVVQCNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DHLNGILF + +R+ Sbjct: 117 QVELTAYDDVARMILHMVDHLNGILFTEKANRI 149 >gi|225351798|ref|ZP_03742821.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158142|gb|EEG71425.1| hypothetical protein BIFPSEUDO_03395 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 218 Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats. Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 11/158 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + E + LI+ M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQQTAAYEGQLSRKTLDKLIETMRVTMIEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A V INP + + EGCLS Y+A KR I Sbjct: 88 VEDHVRDDDDDDPREAAEFPFHVIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDII 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D + + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGKQHEEHLHGWPARIFQHETDHLSGELYIDK 185 >gi|319892089|ref|YP_004148964.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|317161785|gb|ADV05328.1| Peptide deformylase [Staphylococcus pseudintermedius HKU10-03] gi|323464802|gb|ADX76955.1| peptide deformylase 2 [Staphylococcus pseudintermedius ED99] Length = 183 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ P LR+ ++ +E + + + +M E G+GLA Sbjct: 3 TMKDIIRDGHPTLRQRAKEVEFPLTEEERQTLLDMQTFLKNSQDPEIAEKYQLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI V R+ + L D + I I Y + D V Sbjct: 63 APQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVDEDVPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R I ++ D + + G A +QHELDHLNG+LF DH+ Sbjct: 123 HRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHID 169 >gi|289773445|ref|ZP_06532823.1| polypeptide deformylase [Streptomyces lividans TK24] gi|289703644|gb|EFD71073.1| polypeptide deformylase [Streptomyces lividans TK24] Length = 218 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + + G A +QHE DHL+G L++D Sbjct: 144 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181 >gi|256789557|ref|ZP_05527988.1| peptide deformylase [Streptomyces lividans TK24] Length = 222 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 28 LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 87 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 88 EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + + G A +QHE DHL+G L++D Sbjct: 148 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 185 >gi|224282525|ref|ZP_03645847.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|310286987|ref|YP_003938245.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313139678|ref|ZP_07801871.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] gi|309250923|gb|ADO52671.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|313132188|gb|EFR49805.1| peptide deformylase 1 [Bifidobacterium bifidum NCIMB 41171] Length = 217 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 69/157 (43%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P INP D + EGCLS Y+A +R IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHAIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D N + G A QHE DHL+G L+ID Sbjct: 148 RWTDENGKQHEERLHGWPARIFQHETDHLSGELYIDK 184 >gi|21219403|ref|NP_625182.1| peptide deformylase [Streptomyces coelicolor A3(2)] gi|23396576|sp|Q9RD27|DEF1_STRCO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|6562865|emb|CAB62674.1| polypeptide deformylase [Streptomyces coelicolor A3(2)] Length = 218 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRRAAEPYDGQVAPALFERFVEALRLTMHAAPGVGLAAPQVGVGLRVAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPDEVRVARGRVPQPFRVLVNPSYEPAGAGRAAFFEGCLSVPGWQAVVARHAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + + G A +QHE DHL+G L++D Sbjct: 144 LRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181 >gi|257420477|ref|ZP_05597467.1| polypeptide deformylase [Enterococcus faecalis X98] gi|257162301|gb|EEU92261.1| polypeptide deformylase [Enterococcus faecalis X98] gi|315154772|gb|EFT98788.1| peptide deformylase [Enterococcus faecalis TX0043] Length = 187 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENEKPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|116670740|ref|YP_831673.1| peptide deformylase [Arthrobacter sp. FB24] gi|116610849|gb|ABK03573.1| Peptide deformylase [Arthrobacter sp. FB24] Length = 226 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%) Query: 6 LVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V P+LR+ + P E +++ LI M EVM+ G+GLAA Q+G+ +L V++ Sbjct: 31 IVQAGHPVLRQQAAPYEGQLDGTELAALIALMREVMHDAPGVGLAAPQLGIPLQLAVLED 90 Query: 64 QDH----------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 Q INP + + EGCLS+ +A V R + + Sbjct: 91 QYDVDAETAAVRHRSPLEFFAVINPSYSPLGTGTAAFYEGCLSLQGLQAVVSRHETVRLD 150 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + G A +QHE DHL GIL++D Sbjct: 151 FTDPGGTRRQQDFFGWQARIVQHEADHLQGILYVDK 186 >gi|302555792|ref|ZP_07308134.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] gi|302473410|gb|EFL36503.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736] Length = 214 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ ++ ++ + M + G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRRGTEPYDGQLAPELLARFVEALRVTMRAAPGVGLAAPQVGVPLRIAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPEEVRLARGRVPLPFRVLVNPAYAPVGGARAAFFEGCLSVPGWQAVVARPAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + D + + G A +QHE DHL+G+L++D Sbjct: 144 LTGQDEHGRALDEVFTGWPARIVQHETDHLDGVLYLDRAES 184 >gi|195499829|ref|XP_002097113.1| GE24678 [Drosophila yakuba] gi|194183214|gb|EDW96825.1| GE24678 [Drosophila yakuba] Length = 238 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + K + ++ +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAAVVPKEHLDSPELKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + EGC+S+ Y A+V+R + Sbjct: 113 GRIRKELPEAVYQTRQMSELPLTVFINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + G A QHE+DHL G L+ DH+ R Sbjct: 173 KLTGLDQQGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|228474307|ref|ZP_04059042.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936719|ref|ZP_07844066.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271666|gb|EEK13013.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655338|gb|EFS19083.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 183 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++ + N + +M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDVNLPLSEEDKNTLRDMREFLINSQDDEIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + +++ + L D K+ + + Y + + V Sbjct: 63 APQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R T++ D + + G A QHE+DHLNGI+F D++ + Sbjct: 123 HRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDK 170 >gi|311063862|ref|YP_003970587.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|310866181|gb|ADP35550.1| Peptide deformylase [Bifidobacterium bifidum PRL2010] Length = 217 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 70/157 (44%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVQYSGQLSKGTLNKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP D + EGCLS Y+A +R IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYEPIGDATRSFYEGCLSFDGYQAVRRRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 R+ D N + G A QHE DHL+G L+ID Sbjct: 148 RWADENGKQHEERLHGWPARIFQHETDHLSGELYIDK 184 >gi|296331515|ref|ZP_06873986.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674182|ref|YP_003865854.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] gi|296151328|gb|EFG92206.1| peptide deformylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412426|gb|ADM37545.1| peptide deformylase A [Bacillus subtilis subsp. spizizenii str. W23] Length = 184 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 +V P LR + P+E + +M+E G+GLAA QI Sbjct: 7 IVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQI 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ + +D + + NPKI++ S + S + V R A Sbjct: 67 NIKKRMIAVHAEDASGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ ++ I G A QHE+DHLNG++F DH+ + Sbjct: 127 IRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|225706662|gb|ACO09177.1| Peptide deformylase, mitochondrial precursor [Osmerus mordax] Length = 248 Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ + S++ +I M++VM +GL+A Q+GV R++ ++ Sbjct: 74 QVGDPVLRSHAAPVDPSAVLGSEVQEVIGAMVKVMRKLQCVGLSAPQVGVPLRILALEFP 133 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + VFINP++ ++QE C SI + A V R + Sbjct: 134 ESMLKDVSPAAREARGVAVVPLRVFINPQLRVLDRRTVLFQEACESISGFSARVPRYLEV 193 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V ++ A+ G A LQHE+DHL+G+L+IDH+ Sbjct: 194 EVSGLNEKAEPVTWEVSGWPARILQHEMDHLDGVLYIDHMD 234 >gi|194902253|ref|XP_001980656.1| GG17275 [Drosophila erecta] gi|190652359|gb|EDV49614.1| GG17275 [Drosophila erecta] Length = 196 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPPEDIDSMEINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + NP++ S + + EGC+S+ Y A V+R + Sbjct: 71 EGKQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R + + +G A QHE+DHLNGI+++D + Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGIIYVDKMD 171 >gi|306520944|ref|ZP_07407291.1| peptide deformylase 2 [Clostridium difficile QCD-32g58] Length = 155 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 6/128 (4%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + I+ L+D+M E MY DG+GLAA Q+G+L R+VVID+ + I Sbjct: 34 DEKIIQLLDDMAETMYDADGVGLAAPQVGILKRVVVIDIGEELIELINPEIIETSGE--- 90 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + +EGCLS+ +V+R ++ VR ++ N + + + LLA HE+DHL+GI Sbjct: 91 ---QIDEEGCLSVVGEAGNVRRPNYVKVRALNRNGETIELEGEELLARAFCHEIDHLDGI 147 Query: 145 LFIDHLSR 152 LF+D + + Sbjct: 148 LFVDKIEK 155 >gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 183 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 8/170 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVI Sbjct: 6 AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 65 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 66 DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 125 Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 126 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 169 >gi|307693348|ref|ZP_07635585.1| peptide deformylase [Ruminococcaceae bacterium D16] Length = 152 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + L DPILR+ + + K++ I L+D+ML+ ++ +G LAA Q+GVL RLV Sbjct: 1 MATRFLRYDSDPILRKKCKAVLKVDDKIRQLLDDMLDTLHETENGAALAANQVGVLKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID D + I+ EGCLS P+ R +T++ ++ Sbjct: 61 VIDFNDTRLKLVNPKMIS------QSGVQECVEGCLSFPNRFVKTIRPQKVTIQALNEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + I+ + +A C HEL+HL+G++F+D Sbjct: 115 EEIIVDGEDEMAKCFCHELEHLDGMIFLDK 144 >gi|228992712|ref|ZP_04152638.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] gi|228998756|ref|ZP_04158342.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|229006272|ref|ZP_04163956.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228754918|gb|EEM04279.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock1-4] gi|228760931|gb|EEM09891.1| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides Rock3-17] gi|228767044|gb|EEM15681.1| Peptide deformylase (Polypeptide deformylase) [Bacillus pseudomycoides DSM 12442] Length = 184 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIEKINSD-----IMNLID--------NMLEVMYSTDGIGLAAVQ 51 ++ +PILR V+ + S+ + +I+ M+E GIG+AA Q Sbjct: 6 DVIREGNPILRAVAEEVPLPASEEDIRTLKEMIELVINSQHPEMVEKYNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 IG+ R++ + + D NPKII+ S + + + + V R Sbjct: 66 IGISKRMIAVHVTDTNETLYSYALFNPKIISHSVERTYLSGGEGCLSVDREVPGYVPRYT 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV+ + + + GL A QHE+DHLNG++F DH++ Sbjct: 126 RITVKATTIDGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHIN 168 >gi|256831860|ref|YP_003160587.1| Peptide deformylase [Jonesia denitrificans DSM 20603] gi|256685391|gb|ACV08284.1| Peptide deformylase [Jonesia denitrificans DSM 20603] Length = 245 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 9/156 (5%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 PLV P+LRR + E ++ +D M ID M M G+GLAA Q+GV + V+ Sbjct: 49 VLPLVHAGHPVLRREAGRYEGQLGADFMAFIDAMNTTMVVAPGVGLAAPQVGVSLAVAVM 108 Query: 62 DLQD--------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V +NP D+ + EGCLS+P Y+A V R + V Sbjct: 109 RDPGAADDADPRERVAFPMRVLVNPVYEPVGDEKVSFFEGCLSVPGYQAVVARWRRVRVM 168 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D G A QHE+DHL G+L++D Sbjct: 169 GWDETGAPVDEVLTGWPARIAQHEIDHLRGVLYVDR 204 >gi|169404548|pdb|2OS1|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|241562206|ref|XP_002401329.1| polypeptide deformylase, putative [Ixodes scapularis] gi|215499858|gb|EEC09352.1| polypeptide deformylase, putative [Ixodes scapularis] Length = 217 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 21/182 (11%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ + +I +I M +VM T +G++A QIG ++ +++ Sbjct: 35 QVGDPVLRVRAEPVDPQKITSPEIRKVIHTMRQVMRGTYSVGISAPQIGCPLQITMMEFS 94 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R FINP + ++ V+ EGC SI Y A+V R + Sbjct: 95 NSNIRMAKKEDMTARLYQAFPLKVFINPTMEVVNNQQLVFPEGCESIRGYSAEVPRYYEV 154 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM----ITKKMSKLV 166 + ++ + +H A G A +QHE+DHL G L+ID ++ K++ K Sbjct: 155 KISGLNEHGEHHEWQARGWPARIIQHEIDHLEGCLYIDRMNSRSFQFNYWQYIKRLPKSR 214 Query: 167 QL 168 +L Sbjct: 215 KL 216 >gi|255629341|gb|ACU15015.1| unknown [Glycine max] Length = 223 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V + +L + +E I + + +ID+M+ VM G+GLAA QIG+ R++V+ Sbjct: 36 KIVKAGEAVLHSRAEEVEAIEIKSERVQKIIDDMVRVMRKAPGVGLAAPQIGIPLRIIVL 95 Query: 62 DLQDHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + + +NPK+ + +++ EGCLS+P Y A V+R Sbjct: 96 EDKIQYMAYYSNQELKAQDRTPFDLLVILNPKLKNTTTRTALFFEGCLSVPGYSAVVERY 155 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V D + I A G A LQHE DHL+G L++D + Sbjct: 156 LDVEVAGFDRYGEPIKINATGWQARILQHECDHLDGTLYVDKMVP 200 >gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285373|sp|Q057D2|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)] gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 149 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 2/151 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + ++ FPD LR +S+PI+ IN +I +M + MY+ +GIGLAA QI +L +++V Sbjct: 1 MSIRKILQFPDYRLRLLSKPIKIINKKTKKIIYDMFDTMYANNGIGLAAPQINILKQIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V INP I+ + + EGCLSIP A +KRS+ I ++ ++ + Sbjct: 61 ISSLK--PTMSELVLINPVILKKNKKYINTIEGCLSIPKKTAKIKRSSCIKIQAINTYGK 118 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A LL+ C+QHE+DHL G LFID+++ Sbjct: 119 SFTLTAKSLLSICIQHEIDHLIGKLFIDYIN 149 >gi|163840759|ref|YP_001625164.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] gi|162954235|gb|ABY23750.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209] Length = 213 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 12/159 (7%) Query: 5 PLVIFPDPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV-- 60 +V P LR ++P S++ ++ M M++ G GLAA Q+GV +L V Sbjct: 27 EIVQAGHPTLRAPAQPWNGQLGASELEQFVELMRRCMHAAPGFGLAAPQLGVSLQLAVLE 86 Query: 61 --------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 I +NP+ + + EGCLS+ ++A V R I + Sbjct: 87 DGHQVDSEIASIRERSNLPFFAMLNPRYQPLNSILVGFYEGCLSMSGWQAVVYRHHAIQL 146 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y + + G A +QHE DHL G+L++D Sbjct: 147 TYTTVDGELVQRELAGWPARIVQHETDHLAGMLYLDKAK 185 >gi|29377524|ref|NP_816678.1| peptide deformylase [Enterococcus faecalis V583] gi|227554489|ref|ZP_03984536.1| peptide deformylase [Enterococcus faecalis HH22] gi|229547504|ref|ZP_04436229.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255970735|ref|ZP_05421321.1| peptide deformylase [Enterococcus faecalis T1] gi|255974309|ref|ZP_05424895.1| peptide deformylase [Enterococcus faecalis T2] gi|256618174|ref|ZP_05475020.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256761103|ref|ZP_05501683.1| peptide deformylase [Enterococcus faecalis T3] gi|256854744|ref|ZP_05560108.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256958348|ref|ZP_05562519.1| peptide deformylase [Enterococcus faecalis DS5] gi|256960417|ref|ZP_05564588.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256962908|ref|ZP_05567079.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|257078342|ref|ZP_05572703.1| peptide deformylase [Enterococcus faecalis JH1] gi|257080527|ref|ZP_05574888.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|257083262|ref|ZP_05577623.1| peptide deformylase [Enterococcus faecalis Fly1] gi|257088182|ref|ZP_05582543.1| peptide deformylase [Enterococcus faecalis D6] gi|257417200|ref|ZP_05594194.1| peptide deformylase [Enterococcus faecalis AR01/DG] gi|257417917|ref|ZP_05594911.1| peptide deformylase [Enterococcus faecalis T11] gi|293383918|ref|ZP_06629820.1| peptide deformylase [Enterococcus faecalis R712] gi|293388312|ref|ZP_06632826.1| peptide deformylase [Enterococcus faecalis S613] gi|294780198|ref|ZP_06745570.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|300861505|ref|ZP_07107589.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|307270427|ref|ZP_07551728.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307273932|ref|ZP_07555144.1| peptide deformylase [Enterococcus faecalis TX0855] gi|307276707|ref|ZP_07557824.1| peptide deformylase [Enterococcus faecalis TX2134] gi|307278203|ref|ZP_07559285.1| peptide deformylase [Enterococcus faecalis TX0860] gi|307286413|ref|ZP_07566519.1| peptide deformylase [Enterococcus faecalis TX0109] gi|307292087|ref|ZP_07571954.1| peptide deformylase [Enterococcus faecalis TX0411] gi|312901914|ref|ZP_07761177.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312906741|ref|ZP_07765741.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|312910721|ref|ZP_07769560.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|312953167|ref|ZP_07772014.1| peptide deformylase [Enterococcus faecalis TX0102] gi|39930870|sp|Q82ZJ0|DEF_ENTFA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus faecalis V583] gi|227176399|gb|EEI57371.1| peptide deformylase [Enterococcus faecalis HH22] gi|229307346|gb|EEN73333.1| peptide deformylase [Enterococcus faecalis TX1322] gi|255961753|gb|EET94229.1| peptide deformylase [Enterococcus faecalis T1] gi|255967181|gb|EET97803.1| peptide deformylase [Enterococcus faecalis T2] gi|256597701|gb|EEU16877.1| peptide deformylase [Enterococcus faecalis ATCC 4200] gi|256682354|gb|EEU22049.1| peptide deformylase [Enterococcus faecalis T3] gi|256710304|gb|EEU25348.1| polypeptide deformylase [Enterococcus faecalis T8] gi|256948844|gb|EEU65476.1| peptide deformylase [Enterococcus faecalis DS5] gi|256950913|gb|EEU67545.1| peptide deformylase [Enterococcus faecalis Merz96] gi|256953404|gb|EEU70036.1| peptide deformylase [Enterococcus faecalis HIP11704] gi|256986372|gb|EEU73674.1| peptide deformylase [Enterococcus faecalis JH1] gi|256988557|gb|EEU75859.1| peptide deformylase [Enterococcus faecalis E1Sol] gi|256991292|gb|EEU78594.1| peptide deformylase [Enterococcus faecalis Fly1] gi|256996212|gb|EEU83514.1| peptide deformylase [Enterococcus faecalis D6] gi|257159028|gb|EEU88988.1| peptide deformylase [Enterococcus faecalis ARO1/DG] gi|257159745|gb|EEU89705.1| peptide deformylase [Enterococcus faecalis T11] gi|291078745|gb|EFE16109.1| peptide deformylase [Enterococcus faecalis R712] gi|291082322|gb|EFE19285.1| peptide deformylase [Enterococcus faecalis S613] gi|294452741|gb|EFG21171.1| peptide deformylase [Enterococcus faecalis PC1.1] gi|295114395|emb|CBL33032.1| peptide deformylase [Enterococcus sp. 7L76] gi|300848966|gb|EFK76719.1| peptide deformylase [Enterococcus faecalis TUSoD Ef11] gi|306496869|gb|EFM66419.1| peptide deformylase [Enterococcus faecalis TX0411] gi|306502426|gb|EFM71699.1| peptide deformylase [Enterococcus faecalis TX0109] gi|306505192|gb|EFM74380.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306506606|gb|EFM75759.1| peptide deformylase [Enterococcus faecalis TX2134] gi|306509411|gb|EFM78469.1| peptide deformylase [Enterococcus faecalis TX0855] gi|306513205|gb|EFM81836.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627389|gb|EFQ10672.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310628910|gb|EFQ12193.1| peptide deformylase [Enterococcus faecalis TX0102] gi|311288984|gb|EFQ67540.1| peptide deformylase [Enterococcus faecalis DAPTO 516] gi|311290981|gb|EFQ69537.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315027683|gb|EFT39615.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315028233|gb|EFT40165.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315031247|gb|EFT43179.1| peptide deformylase [Enterococcus faecalis TX0017] gi|315036534|gb|EFT48466.1| peptide deformylase [Enterococcus faecalis TX0027] gi|315143298|gb|EFT87314.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315149069|gb|EFT93085.1| peptide deformylase [Enterococcus faecalis TX0012] gi|315152916|gb|EFT96932.1| peptide deformylase [Enterococcus faecalis TX0031] gi|315157489|gb|EFU01506.1| peptide deformylase [Enterococcus faecalis TX0312] gi|315164500|gb|EFU08517.1| peptide deformylase [Enterococcus faecalis TX1302] gi|315167177|gb|EFU11194.1| peptide deformylase [Enterococcus faecalis TX1341] gi|315171029|gb|EFU15046.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315173457|gb|EFU17474.1| peptide deformylase [Enterococcus faecalis TX1346] gi|315573357|gb|EFU85548.1| peptide deformylase [Enterococcus faecalis TX0309B] gi|315581211|gb|EFU93402.1| peptide deformylase [Enterococcus faecalis TX0309A] gi|323479000|gb|ADX78439.1| peptide deformylase [Enterococcus faecalis 62] gi|327536189|gb|AEA95023.1| peptide deformylase [Enterococcus faecalis OG1RF] Length = 187 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|18043802|gb|AAH19912.1| Peptide deformylase (mitochondrial) [Homo sapiens] Length = 243 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P F+NP + + EGC S+ + A V R + Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230 >gi|11641243|ref|NP_071736.1| peptide deformylase, mitochondrial precursor [Homo sapiens] gi|17433054|sp|Q9HBH1|DEFM_HUMAN RecName: Full=Peptide deformylase, mitochondrial; AltName: Full=Polypeptide deformylase; Flags: Precursor gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like protein [Homo sapiens] gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like protein [Homo sapiens] gi|38230771|gb|AAR14341.1| peptide deformylase [synthetic construct] gi|119603671|gb|EAW83265.1| hCG2027080, isoform CRA_a [Homo sapiens] gi|119603674|gb|EAW83268.1| hCG2027080, isoform CRA_a [Homo sapiens] Length = 243 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 128 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P F+NP + + EGC S+ + A V R + Sbjct: 129 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230 >gi|160876705|ref|YP_001556021.1| peptide deformylase [Shewanella baltica OS195] gi|160862227|gb|ABX50761.1| peptide deformylase [Shewanella baltica OS195] gi|315268905|gb|ADT95758.1| peptide deformylase [Shewanella baltica OS678] Length = 185 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ Sbjct: 13 LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P+V +NP+II S + +EGCLS+P R ++ R I VRY + Sbjct: 73 SRPNERYPDAPNMAPVVVVNPQIIHASSELVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|304410515|ref|ZP_07392133.1| peptide deformylase [Shewanella baltica OS183] gi|307304608|ref|ZP_07584358.1| peptide deformylase [Shewanella baltica BA175] gi|304350999|gb|EFM15399.1| peptide deformylase [Shewanella baltica OS183] gi|306912010|gb|EFN42434.1| peptide deformylase [Shewanella baltica BA175] Length = 185 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ Sbjct: 13 LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 73 SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|114046443|ref|YP_736993.1| peptide deformylase [Shewanella sp. MR-7] gi|113887885|gb|ABI41936.1| peptide deformylase [Shewanella sp. MR-7] Length = 181 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 6/163 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P+ + + IL+ + + ++ + L + M M + G+G+AA Q+ L ++ Sbjct: 14 LPIAVVGEAILKEQAIVVRDFDTALSQLAEQMAVSMVAAKGVGIAAPQVHSPLALFIMAS 73 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + A NP+V +NP+I++ S D +EGCLS+P R + R I VRY + Sbjct: 74 RPNERYPDAPLMNPVVVVNPEILSASADLVSGEEGCLSVPGQRFTIWRHQQIVVRYQNLA 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160 Q Q G +A QHE DHL GI ++ ++ M + Sbjct: 134 GQWQRSELTGFIARIFQHEFDHLQGITLLERSQMPEQKHMARE 176 >gi|296453662|ref|YP_003660805.1| peptide deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296183093|gb|ADG99974.1| Peptide deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 217 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYRPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184 >gi|330718596|ref|ZP_08313196.1| peptide deformylase [Leuconostoc fallax KCTC 3537] Length = 188 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V DP+LR ++ +E ++ +I L +M+ E G+GLAA Q Sbjct: 7 KIVRDGDPVLRAQAKKVEFPLSDEIQQLTQDMMDYLVISQDDEQNEKYGLRPGVGLAAPQ 66 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 +G ++ I + + + SV + D V Sbjct: 67 VGYSLQMASILVPPLDEDSDEPYWQGTIFNPVIISESVKRGALNVGEGCLSVDEDVPGFV 126 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R+ ITVRY D Q Q I A QHE+DHL+G L+ DH++ Sbjct: 127 TRANRITVRYQDEQGQTQTIKLRDYPAIIFQHEIDHLHGHLYYDHIN 173 >gi|227517325|ref|ZP_03947374.1| peptide deformylase [Enterococcus faecalis TX0104] gi|227075195|gb|EEI13158.1| peptide deformylase [Enterococcus faecalis TX0104] Length = 187 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMDGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|90410436|ref|ZP_01218452.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] gi|90328677|gb|EAS44961.1| hypothetical polypeptide deformylase [Photobacterium profundum 3TCK] Length = 178 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 2 VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 ++ +P+LR + + +IN + L+ ++ ++M S G+G+AA Q+G R Sbjct: 3 ASLEIIQLGNPLLRVPAEALSTTQINVTLP-LLASLEQIMLSHQGVGIAAPQVGESLRAF 61 Query: 60 VIDLQDHAHRKN-----PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ + + + P + INP+++ SD EGCLSIP RA + R I V Y Sbjct: 62 IVASRPNDRYPHAPLMEPTIMINPELLWHSDLMEKDWEGCLSIPGIRAKINRYTHIRVSY 121 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++ +A QHELDHLNGI+F+D +L Sbjct: 122 LNVLGDVIETEFTDFIARIFQHELDHLNGIVFLDRADKL 160 >gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829] gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829] Length = 187 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 69/170 (40%), Positives = 90/170 (52%), Gaps = 8/170 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 K +V P IL+ V P+++I +I +L +M EVMY+TDG GLAA QIG RLVVI Sbjct: 10 AYKEMVCAPSVILQTVCEPVKEITQEIKDLAHHMFEVMYATDGCGLAAPQIGKNIRLVVI 69 Query: 62 DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D RK P V +NPKI+ + EGCLS P VKR + + ++ + Sbjct: 70 DCEWGEGSRKKPYVLVNPKIVVADEADRSMSEGCLSYPGILVPVKRPSHVICEALNLDGD 129 Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 A G LA CLQHE DHL G+ DHL + KKM KL + + Sbjct: 130 LIRYEARGNLLAACLQHECDHLQGVTIPDHLP------LHKKMEKLEEYK 173 >gi|169404547|pdb|2OS0|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 188 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + +GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|302830440|ref|XP_002946786.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] gi|300267830|gb|EFJ52012.1| hypothetical protein VOLCADRAFT_120388 [Volvox carteri f. nagariensis] Length = 257 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 24/169 (14%) Query: 6 LVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V P+LR+V+R + + + NL+ M VM + G+GLAA QIG +R++V++ Sbjct: 51 IVQAGTPVLRQVAREVPPELLGSEWLRNLVATMTSVMRAAPGVGLAAPQIGEPWRVIVLE 110 Query: 63 LQDHAHRKN---------------------PMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 ++ + ++ + + + + EGCLS+ Y Sbjct: 111 DREEYIVRQAASGMYDDDTLAAMERRAFGPLVLVNPRGLRPVGHEGAAFFEGCLSVRGYV 170 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 A V R + + +D ++ A G +A LQHE DHL GIL++D + Sbjct: 171 AVVPRYRIVELEAVDPAGLPVVVRASGWMARILQHEFDHLQGILYVDRM 219 >gi|24372647|ref|NP_716689.1| polypeptide deformylase [Shewanella oneidensis MR-1] gi|32363157|sp|Q8EHZ2|DEF2_SHEON RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|24346687|gb|AAN54134.1|AE015550_9 polypeptide deformylase [Shewanella oneidensis MR-1] Length = 181 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-- 61 P+ + + IL++ + + + + L M M G+G+AA Q+ L ++ Sbjct: 14 LPIAVVGEAILKQQAIEVRDFDDTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFIMAS 73 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + A P+V +NP+I+ S +EGCLS+P R + R I VRY + Sbjct: 74 RPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQNLA 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLS-RLKRDMITK 160 Q Q G +A QHE DHL GI ++ ++ M + Sbjct: 134 GQWQHSELTGFIARIFQHEFDHLQGITLLERSQMPEQKLMAQE 176 >gi|329571126|gb|EGG52832.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 187 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHVKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|153001985|ref|YP_001367666.1| peptide deformylase [Shewanella baltica OS185] gi|151366603|gb|ABS09603.1| peptide deformylase [Shewanella baltica OS185] Length = 185 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ Sbjct: 13 LLPIALVGEAILGQTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHCPLALFIMA 72 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 73 SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|213692889|ref|YP_002323475.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524350|gb|ACJ53097.1| Peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459064|dbj|BAJ69685.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 217 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184 >gi|126173131|ref|YP_001049280.1| peptide deformylase [Shewanella baltica OS155] gi|125996336|gb|ABN60411.1| peptide deformylase [Shewanella baltica OS155] Length = 185 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+ + + IL + + + ++++ +L + M M + G+G+AA Q+ L ++ Sbjct: 13 LLPIALVGEAILGQTAITVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 73 SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|254498920|ref|ZP_05111625.1| peptide deformylase [Legionella drancourtii LLAP12] gi|254351905|gb|EET10735.1| peptide deformylase [Legionella drancourtii LLAP12] Length = 178 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V+ +P LR VS+PI+ D+ L + + +M +G+GLAA QIG+ R +V Sbjct: 7 DVVLLGNPTLRMVSKPIDDEEFGTLDLNQLSERLFHMMKIKNGLGLAAPQIGINKRAIVF 66 Query: 62 DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + +H +K+ NP + SD EGCLS+ D R V R I R D Sbjct: 67 GMDNHPVKKHLPPIPYTILFNPIFESTSDFIEEEYEGCLSVGDLRGKVPRHKNIIYRGYD 126 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A L A +QHE DHLNGI+F+D ++ Sbjct: 127 VDGNLIEREASDLHARVVQHETDHLNGIIFLDKVT 161 >gi|229548080|ref|ZP_04436805.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257091309|ref|ZP_05585670.1| peptide deformylase [Enterococcus faecalis CH188] gi|312905368|ref|ZP_07764483.1| peptide deformylase [Enterococcus faecalis TX0635] gi|229306766|gb|EEN72762.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|257000121|gb|EEU86641.1| peptide deformylase [Enterococcus faecalis CH188] gi|310631392|gb|EFQ14675.1| peptide deformylase [Enterococcus faecalis TX0635] gi|315162546|gb|EFU06563.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315578554|gb|EFU90745.1| peptide deformylase [Enterococcus faecalis TX0630] Length = 187 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITKEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|29833891|ref|NP_828525.1| peptide deformylase [Streptomyces avermitilis MA-4680] gi|39931072|sp|Q825U9|DEF3_STRAW RecName: Full=Peptide deformylase 3; Short=PDF 3; AltName: Full=Polypeptide deformylase 3 gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680] Length = 224 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LRR + P + ++ + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 33 LPIVAAGDPVLRRGAEPYDGQLGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVI 92 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP D + + EGCLS+P ++A V R A + Sbjct: 93 EDPAPVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPARVR 152 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + +D + + G A +QHE DHL+G+L++D Sbjct: 153 LTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDR 190 >gi|328955668|ref|YP_004373001.1| peptide deformylase [Coriobacterium glomerans PW2] gi|328455992|gb|AEB07186.1| peptide deformylase [Coriobacterium glomerans PW2] Length = 185 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 2/165 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +V+ PD LRR PIE+I +I L +M + M+ G GLAA Q+G +++V Sbjct: 1 MEINGIVLSPDERLRRECAPIEEITPEIERLASHMKQEMFENAGCGLAAPQVGQTVQMIV 60 Query: 61 IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ID +P V INP II SD + + EGCLSIP ++ R + V D +A Sbjct: 61 IDTSYTSREDYDPYVLINPVIIEQSDRLTAFSEGCLSIPGISCEIYRPDHVVVEAYDLDA 120 Query: 120 QHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 A G + CLQHE+DHL GI + L + + Sbjct: 121 NLIRYEAAGDLMCVCLQHEIDHLKGITMFERLDPAAHVIALRAYQ 165 >gi|283783592|ref|YP_003374346.1| peptide deformylase [Gardnerella vaginalis 409-05] gi|283442075|gb|ADB14541.1| peptide deformylase [Gardnerella vaginalis 409-05] Length = 217 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + + + + LI M M G+GLAA QIG+ + V Sbjct: 28 ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87 Query: 61 IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 I+ +P INP + EGCLS+ Y+A +R + Sbjct: 88 IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDVQA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + + G A QHE DHL G L+ID Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184 >gi|253731832|ref|ZP_04865997.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724431|gb|EES93160.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|329728826|gb|EGG65247.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] Length = 162 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|229547451|ref|ZP_04436176.1| peptide deformylase [Enterococcus faecalis TX1322] gi|307276655|ref|ZP_07557773.1| peptide deformylase [Enterococcus faecalis TX2134] gi|229307483|gb|EEN73470.1| peptide deformylase [Enterococcus faecalis TX1322] gi|306506765|gb|EFM75917.1| peptide deformylase [Enterococcus faecalis TX2134] gi|315028353|gb|EFT40285.1| peptide deformylase [Enterococcus faecalis TX4000] gi|315144145|gb|EFT88161.1| peptide deformylase [Enterococcus faecalis TX2141] gi|315159377|gb|EFU03394.1| peptide deformylase [Enterococcus faecalis TX0312] Length = 150 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + + Sbjct: 2 KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESG----HFEL 57 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 +I S+ EGCLSIP+ V+R+ +TVRY D + + A G LA QH Sbjct: 58 INPVIIEKKGTSIDVEGCLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117 Query: 137 ELDHLNGILFIDHL 150 E+DHLNG LFID + Sbjct: 118 EIDHLNGELFIDKM 131 >gi|66771605|gb|AAY55114.1| IP07194p [Drosophila melanogaster] Length = 206 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 21 QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 80 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 + + + ++ + EGC+S+ Y A+V+R + Sbjct: 81 EGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKV 140 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R + + +G A QHE+DHLNG +++D + Sbjct: 141 RIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 181 >gi|262279936|ref|ZP_06057721.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] gi|262260287|gb|EEY79020.1| peptide deformylase 2 [Acinetobacter calcoaceticus RUH2202] Length = 160 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 83/159 (52%), Gaps = 9/159 (5%) Query: 1 MVK-KPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M P+ + IL+ ++ P+ E + + L M M +G+G+AA Q+ + Sbjct: 1 MSVVLPVAKRGEDILKLIAAPVSSSELNSDWLYGLAAAMHATMLERNGVGIAAPQVYISK 60 Query: 57 RLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 R++++ A + +V +NP+I+ FS + + +EGCLS+PD R V+R+ + Sbjct: 61 RVIIVASRPNPRYPDAPEMDAVVMVNPEILEFSSETLLGEEGCLSVPDERGQVERAEMVK 120 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V+Y + G A +QHE+DHLNG+LF++ + Sbjct: 121 VKYSTLQGEFVETIFHGFPARIVQHEVDHLNGVLFVERI 159 >gi|195571951|ref|XP_002103964.1| GD20712 [Drosophila simulans] gi|194199891|gb|EDX13467.1| GD20712 [Drosophila simulans] Length = 196 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + NP++ S + + EGC+S+ Y A V+R + Sbjct: 71 EGKQEQFKPEIYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +R + + +G A QHE+DHLNG +++D + Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMDP 172 >gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1] gi|23396556|sp|Q9RRQ4|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1] Length = 232 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 24/189 (12%) Query: 3 KKPLVIFPDPILRRVSRPIEKIN---------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 P+ ++ DPILRR +R + + + + D MLE M+ G+GLAA QIG Sbjct: 21 VYPMRLYGDPILRRKARNLTAADTLHVPGFEPQTVREVADTMLETMFEERGVGLAAPQIG 80 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKI---------------ITFSDDFSVYQEGCLSIP 98 + R+ V +N + I D S + Sbjct: 81 LPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKSYQEGCLSIPG 140 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 Y V R+ + V Y D + Q + I A+ LA QHE DHL+G LF+DHL + Sbjct: 141 IYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHLPADITEDH 200 Query: 159 TKKMSKLVQ 167 K + ++ Q Sbjct: 201 RKDLLRIQQ 209 >gi|227517269|ref|ZP_03947318.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229548020|ref|ZP_04436745.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|307270561|ref|ZP_07551859.1| peptide deformylase [Enterococcus faecalis TX4248] gi|307284851|ref|ZP_07565007.1| peptide deformylase [Enterococcus faecalis TX0860] gi|312902126|ref|ZP_07761386.1| peptide deformylase [Enterococcus faecalis TX0470] gi|312905430|ref|ZP_07764544.1| peptide deformylase [Enterococcus faecalis TX0635] gi|312906688|ref|ZP_07765688.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|227075276|gb|EEI13239.1| peptide deformylase [Enterococcus faecalis TX0104] gi|229306896|gb|EEN72892.1| peptide deformylase [Enterococcus faecalis ATCC 29200] gi|306503110|gb|EFM72367.1| peptide deformylase [Enterococcus faecalis TX0860] gi|306513142|gb|EFM81776.1| peptide deformylase [Enterococcus faecalis TX4248] gi|310627336|gb|EFQ10619.1| peptide deformylase [Enterococcus faecalis DAPTO 512] gi|310631159|gb|EFQ14442.1| peptide deformylase [Enterococcus faecalis TX0635] gi|311290790|gb|EFQ69346.1| peptide deformylase [Enterococcus faecalis TX0470] gi|315026429|gb|EFT38361.1| peptide deformylase [Enterococcus faecalis TX2137] gi|315146582|gb|EFT90598.1| peptide deformylase [Enterococcus faecalis TX4244] gi|315161200|gb|EFU05217.1| peptide deformylase [Enterococcus faecalis TX0645] gi|315171198|gb|EFU15215.1| peptide deformylase [Enterococcus faecalis TX1342] gi|315577116|gb|EFU89307.1| peptide deformylase [Enterococcus faecalis TX0630] gi|315581154|gb|EFU93345.1| peptide deformylase [Enterococcus faecalis TX0309A] Length = 150 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI++ + + R I Sbjct: 2 KAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELI 58 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP II + CLSIP+ V+R+ +TVRY D + + A G LA QH Sbjct: 59 NPVIIEKKGTSIDVEG-CLSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQH 117 Query: 137 ELDHLNGILFIDHL 150 E+DHLNG LFID + Sbjct: 118 EIDHLNGELFIDKM 131 >gi|205373016|ref|ZP_03225822.1| peptide deformylase [Bacillus coahuilensis m4-4] Length = 184 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 ++ P LR V++ ++ + + + ++LE GIG+AA Q Sbjct: 6 DIIREGHPTLREVAKEVKIPPSLEDQETLKSLLEYVKNSQDPEKAATFNLRPGIGIAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 I V R++ I + + NP +I+ S + + + D V R Sbjct: 66 IDVSKRMLAIRVPNEKGELIEEALFNPIVISHSVEQAYLTSGEGCLSVDRDVPGFVPRYR 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +TV+ D N Q + + GL A QHE+DHLNGI+F DH++ Sbjct: 126 KVTVKGFDINGQLKTLKLRGLPAIVFQHEIDHLNGIMFYDHIN 168 >gi|251771507|gb|EES52084.1| Polypeptide deformylase [Leptospirillum ferrodiazotrophum] Length = 175 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 2/155 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M +PLV D +LR S P++ ++ ++ ++ + + + G+ +AA QIGV RL V Sbjct: 1 MSVRPLVSHRDTVLRIASEPVDPCAPEVRQVVQDLFDTLATQKGVAMAAPQIGVAMRLFV 60 Query: 61 IDLQDHAHRKNPMV--FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 DL+ + P + I EGCLS P ++R + V + Sbjct: 61 FDLKRPREKGGPPTRGLLINPTIERRFGSIPVIEGCLSFPGLDLSIRRPEGVVVSGYGLD 120 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + ++ GL A ++HE DHL G L D + L Sbjct: 121 GKKVVLEGGGLFARMVEHETDHLEGRLLPDRQNGL 155 >gi|303281244|ref|XP_003059914.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458569|gb|EEH55866.1| predicted protein [Micromonas pusilla CCMP1545] Length = 185 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 18/173 (10%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +V P LR ++ + + LI ML + +GLAA QIGV YR+ V+ Sbjct: 1 EIVQAGTPCLREIAEEVPLSSIDTAKTQELIQEMLSICRGRG-VGLAAPQIGVPYRIFVL 59 Query: 62 DLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + + V INP + S+ + + EGCLS+ YR V+R Sbjct: 60 EDTEEGMSDVSKKDLEAMDRKPFAAKVVINPVVTPVSNLSAAFFEGCLSVQGYRGLVRRY 119 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + V + A G A +QHE+DHLNG+L++D + + K Sbjct: 120 LEVRVTGYGGDGSPVDFVARGWQARIVQHEMDHLNGVLYVDRMDTRTFRRVDK 172 >gi|297243759|ref|ZP_06927689.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|298252952|ref|ZP_06976746.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] gi|296888180|gb|EFH26922.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis AMD] gi|297533316|gb|EFH72200.1| N-formylmethionyl-tRNA deformylase [Gardnerella vaginalis 5-1] Length = 217 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + + + + LI M M G+GLAA QIG+ + V Sbjct: 28 ILPIVQAGEPVLRQRTVAYDGQLTRATLTKLISLMHSTMLEAPGVGLAAPQIGLGLAIAV 87 Query: 61 IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 I+ +P INP + EGCLS+ Y+A +R I Sbjct: 88 IEDHVRDDEDDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVSGYQAVRQRWLDIQA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + + G A QHE DHL G L+ID Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184 >gi|291456210|ref|ZP_06595600.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381487|gb|EFE89005.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 217 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INPK + + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPKYTPVGEKTTSFFEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEQLHGWPARIFQHETDHLSGELYIDK 184 >gi|195107440|ref|XP_001998320.1| GI23900 [Drosophila mojavensis] gi|193914914|gb|EDW13781.1| GI23900 [Drosophila mojavensis] Length = 234 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P+E ++ +I ++D M+ V+ D +G+AA QIGV R++ ++ + Sbjct: 49 QIGDPVLRDRAAEVPVECVDSKEIRAIVDRMVHVLRKYDCVGVAAPQIGVSLRIIAMEFR 108 Query: 65 DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + + EGC+S+ + A+V+R + Sbjct: 109 RGIKKELPEAMYRARQMSELPLTVFINPRLSVTNYTKHKHPEGCMSVRGFSAEVERYEAV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + + G A QHE+DHL+G L+ DH+ R Sbjct: 169 KLSGLDREGEPLSLELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|315148893|gb|EFT92909.1| peptide deformylase [Enterococcus faecalis TX4244] Length = 187 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 20/172 (11%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ +P LR V+ + I + L ++ML E + G+GLA Sbjct: 3 TMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYR 101 A Q+ + R++ + + + SV + D Sbjct: 63 APQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDWDVP 122 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ Sbjct: 123 GYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKE 174 >gi|302563993|ref|NP_001181771.1| peptide deformylase, mitochondrial [Macaca mulatta] Length = 243 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPLQVLALELP 128 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P F+NP + + EGC S+ + A V R + Sbjct: 129 EALCREFPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 188 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D N + A G A +QHE+DHL G LFID + Sbjct: 189 QISGLDPNGEQVAWQASGWAARIIQHEMDHLQGCLFIDKMDS 230 >gi|24645728|ref|NP_731495.1| CG31373 [Drosophila melanogaster] gi|23170932|gb|AAN13481.1| CG31373 [Drosophila melanogaster] Length = 196 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 + + + ++ + EGC+S+ Y A+V+R + Sbjct: 71 EGKQEQFKPEIYEERKMSILPLAVFINPELEIISSQVNKHPEGCMSVRGYSAEVERYDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R + + +G A QHE+DHLNG +++D + Sbjct: 131 RIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 171 >gi|196004180|ref|XP_002111957.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] gi|190585856|gb|EDV25924.1| hypothetical protein TRIADDRAFT_55505 [Trichoplax adhaerens] Length = 201 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 + + +LR + ++ +++D+ LID M++ M S +G+AA Q+G R++ ++ Sbjct: 32 IRQAGESVLREKAAAVDPTAIVSTDVKKLIDRMIKTMRSHGDLGIAAPQLGRPLRIITLE 91 Query: 63 LQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + V INP++ + E C SI + A V R Sbjct: 92 ITKRHLSYLQAQYRNVVQRDTVPLQVLINPQLKVLDNHKVAEYESCSSIHNCMAKVPRYT 151 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V +D + ADG L+ LQHE+DHL+G+L++D + Sbjct: 152 TVEVSALDRHGNRINYIADGWLSRILQHEVDHLDGLLYVDKM 193 >gi|253733547|ref|ZP_04867712.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|258423742|ref|ZP_05686628.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|253728601|gb|EES97330.1| possible peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|257845974|gb|EEV70002.1| polypeptide deformylase [Staphylococcus aureus A9635] Length = 162 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVVKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDMEMEGLLQ----LVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|15924205|ref|NP_371739.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926798|ref|NP_374331.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|57651784|ref|YP_186090.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87161304|ref|YP_493805.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194921|ref|YP_499721.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267706|ref|YP_001246649.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393764|ref|YP_001316439.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus JH1] gi|151221337|ref|YP_001332159.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979536|ref|YP_001441795.1| hypothetical protein SAHV_1205 [Staphylococcus aureus subsp. aureus Mu3] gi|161509387|ref|YP_001575046.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142005|ref|ZP_03566498.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315573|ref|ZP_04838786.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006002|ref|ZP_05144603.2| polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795729|ref|ZP_05644708.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258415953|ref|ZP_05682223.1| peptide deformylase [Staphylococcus aureus A9763] gi|258419700|ref|ZP_05682667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258444552|ref|ZP_05692881.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|258447615|ref|ZP_05695759.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|258449457|ref|ZP_05697560.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|258452512|ref|ZP_05700518.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|258454836|ref|ZP_05702800.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|262048116|ref|ZP_06021003.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262051848|ref|ZP_06024064.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|269202830|ref|YP_003282099.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282892701|ref|ZP_06300936.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282919997|ref|ZP_06327726.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282927555|ref|ZP_06335171.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|284024139|ref|ZP_06378537.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|294848208|ref|ZP_06788955.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295407153|ref|ZP_06816954.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296275236|ref|ZP_06857743.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297245961|ref|ZP_06929820.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|304381222|ref|ZP_07363875.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54036958|sp|P63922|DEFL_STAAN RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|54040934|sp|P63921|DEFL_STAAM RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81694664|sp|Q5HGL7|DEFL_STAAC RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|13701015|dbj|BAB42310.1| SA1058 [Staphylococcus aureus subsp. aureus N315] gi|14246985|dbj|BAB57377.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|57285970|gb|AAW38064.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|87127278|gb|ABD21792.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202479|gb|ABD30289.1| polypeptide deformylase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740775|gb|ABQ49073.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946216|gb|ABR52152.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus JH1] gi|150374137|dbj|BAF67397.1| polypeptide deformylase 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156721671|dbj|BAF78088.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368196|gb|ABX29167.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789701|gb|EEV28041.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257839289|gb|EEV63763.1| peptide deformylase [Staphylococcus aureus A9763] gi|257844285|gb|EEV68667.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257850045|gb|EEV73998.1| formylmethionine deformylase [Staphylococcus aureus A8115] gi|257853806|gb|EEV76765.1| polypeptide deformylase [Staphylococcus aureus A6300] gi|257857445|gb|EEV80343.1| polypeptide deformylase 1 [Staphylococcus aureus A6224] gi|257859730|gb|EEV82572.1| polypeptide deformylase 1 [Staphylococcus aureus A5948] gi|257863219|gb|EEV85983.1| polypeptide deformylase 1 [Staphylococcus aureus A5937] gi|259160249|gb|EEW45277.1| hypothetical protein SA930_1398 [Staphylococcus aureus 930918-3] gi|259163682|gb|EEW48237.1| hypothetical protein SAD30_1892 [Staphylococcus aureus D30] gi|262075120|gb|ACY11093.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|269940707|emb|CBI49088.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus TW20] gi|282590558|gb|EFB95635.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282594713|gb|EFB99697.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282764698|gb|EFC04823.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816897|gb|ADC37384.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294825008|gb|EFG41430.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|294968006|gb|EFG44034.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297177125|gb|EFH36379.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|302751038|gb|ADL65215.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340205|gb|EFM06146.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829609|emb|CBX34451.1| polypeptide deformylase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131006|gb|EFT86990.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|315198452|gb|EFU28781.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|320140970|gb|EFW32817.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144315|gb|EFW36081.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313884|gb|AEB88297.1| Peptide deformylase-like protein [Staphylococcus aureus subsp. aureus T0131] gi|329724773|gb|EGG61278.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] gi|329727640|gb|EGG64096.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 162 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID++ + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 IDMEMEGLLQ----LVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|226438315|pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438316|pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438317|pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438318|pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438319|pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438320|pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438321|pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target gi|226438322|pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide Deformylase, A Novel Cancer Target Length = 183 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV +++ ++L Sbjct: 9 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP 68 Query: 65 DHAHRKNPMV--------------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + R+ P F+NP + + EGC S+ + A V R + Sbjct: 69 EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAV 128 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D N + + A G A +QHE+DHL G LFID + Sbjct: 129 QISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 170 >gi|145342766|ref|XP_001416260.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] gi|144576485|gb|ABO94553.1| Peptide deformylase, mitochondrial [Ostreococcus lucimarinus CCE9901] Length = 274 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 18/172 (10%) Query: 4 KPLVIFPDPILRRVSR--PIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P LR V+R +++I+S +I LI ML V G+GLAA Q+G R+VV Sbjct: 53 RDVVQAGAPALRDVARAVDVDEIDSTEIQELIAEMLRVCR-ARGVGLAAPQLGARRRVVV 111 Query: 61 IDL--------------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 ++ V +NP + D + + EGCLS+ YRA V+R Sbjct: 112 LEDTTEGMSDETSEALAMKRREAFRAKVIVNPTLTPIGDASAAFFEGCLSVAGYRAVVRR 171 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 + R + + A G A LQHE+DHL+G+L+ D + + Sbjct: 172 HLRVRCRGYGGDGKPVDFEAVGWEARILQHEVDHLDGVLYTDRMESRTLRRV 223 >gi|330952315|gb|EGH52575.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 119 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 2/119 (1%) Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 Q+ V R+VV+DL + P VFINP+I +D+ YQEGCLS+P + +V R Sbjct: 1 TQVNVHKRVVVMDLSEDRSE--PRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQK 58 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + V+ +D + + + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 59 VRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 117 >gi|195055502|ref|XP_001994656.1| GH17360 [Drosophila grimshawi] gi|193892419|gb|EDV91285.1| GH17360 [Drosophila grimshawi] Length = 203 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + + + +I ++++ M++V+ D +G+AA Q+GV R++V++ + Sbjct: 18 QIGDPVLRLCAEEVSAERIASQEIKDIVEQMVKVLRHYDCVGVAAPQLGVPMRIIVMEFR 77 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +FINP+I SD + EGC+S+ Y A V R + Sbjct: 78 EGKREQFTPEVYEERKMSHLPLTIFINPQIEIISDKQHTHPEGCMSVRGYSAKVSRYDRV 137 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V + + G A QHE+DHLNGI++ID + Sbjct: 138 RVTGIGILGTPSELELVGWSARIAQHEMDHLNGIVYIDRMD 178 >gi|168184095|ref|ZP_02618759.1| putative peptide deformylase [Clostridium botulinum Bf] gi|237794165|ref|YP_002861717.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] gi|182672791|gb|EDT84752.1| putative peptide deformylase [Clostridium botulinum Bf] gi|229261785|gb|ACQ52818.1| putative peptide deformylase [Clostridium botulinum Ba4 str. 657] Length = 166 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----YYFINPILEFIGDDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGGLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|303243293|ref|ZP_07329698.1| peptide deformylase [Acetivibrio cellulolyticus CD2] gi|302589164|gb|EFL59007.1| peptide deformylase [Acetivibrio cellulolyticus CD2] Length = 186 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 17/164 (10%) Query: 1 MVKKPLVI-----FP--DPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTDG-IGL 47 M ++ F D LR SR I+K ++ I ++ E +Y + +GL Sbjct: 1 MAILSVLKINKSIFGLRDISLRNPSRQIQK--EELREQWFIDFIKDLFETLYYSPTGVGL 58 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 AA Q+GV RLV ID+ KNP INP +D + E CLS+P + V+R Sbjct: 59 AAPQVGVHIRLVAIDM--DRDGKNPFPLINPTYEAVNDSIVLSNESCLSVPGFVGKVQRH 116 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + Y D N + +Y +G A +QHE+DHLNG+L+ID + Sbjct: 117 EKIKLTYWDVNGEEIELYVEGFKAKVIQHEIDHLNGVLYIDRID 160 >gi|217974557|ref|YP_002359308.1| peptide deformylase [Shewanella baltica OS223] gi|217499692|gb|ACK47885.1| peptide deformylase [Shewanella baltica OS223] Length = 185 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 P+ + + IL R + + ++++ +L + M M + G+G+AA Q+ L ++ Sbjct: 13 LLPIALVGEAILGRTAIAVHHFDAELAHLAEQMSASMEAAKGVGIAAPQVHSPLALFIMA 72 Query: 62 ----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + A P+V +NP+II S D +EGCLS+P R ++ R I VRY + Sbjct: 73 SRPNERYPDAPNMAPVVVVNPQIIHASSDLVGGEEGCLSVPGQRFNILRHQAIEVRYQNL 132 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + Q G +A QHE DHL GI ++ Sbjct: 133 QGEWQQAELTGFIARIFQHEFDHLQGITLLER 164 >gi|47221907|emb|CAF98919.1| unnamed protein product [Tetraodon nigroviridis] Length = 198 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ +++ ++ +++VM D +GL+A QIGV R++ ++ Sbjct: 24 QVGDPVLRSRAAPVDPGAVGGAEVQKVVHTLVKVMRELDCVGLSAPQIGVPLRILALEYP 83 Query: 65 DHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + +F+NP++ +++QE C SI + A V R + Sbjct: 84 EKMLEESSPASREARGLSAQPLRIFVNPQLRVLDGRTALFQEACESISGFSATVPRYLSV 143 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V ++ N + A G A LQHE+DHL+G+L+ID + Sbjct: 144 EVSGLNENGEEVRWQARGWPARILQHEMDHLDGVLYIDRMDS 185 >gi|325963300|ref|YP_004241206.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] gi|323469387|gb|ADX73072.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIM--NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V P LR+ + + S + LI M EVM+ G+GLAA Q+G+ ++ V++ Sbjct: 30 PIVQAGHPALRQRAAAYDGQLSAVQLDGLISLMREVMHEAPGVGLAAPQLGIPLQIAVVE 89 Query: 63 LQDHAHRK----------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 Q + + +NP+ D + + EGCLS+ +A V R + + Sbjct: 90 DQYDVDPEAAALRKRSPLEFLAIVNPRYTPLGTDMASFYEGCLSLNGLQAVVARPEKVLL 149 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + + +G A +QHE DHLNG+L++D Sbjct: 150 EFQAPDGSGVQREFEGWQARIVQHETDHLNGVLYVDR 186 >gi|81428697|ref|YP_395697.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|123728642|sp|Q38WP3|DEF_LACSS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|78610339|emb|CAI55388.1| Formylmethionine deformylase (N-formylmethionylaminoacyl-tRNA deformylase) [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 18/169 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K ++ +P LR +++P+ ++ + L +M+ G+GLAA Sbjct: 4 MKDIIREGNPTLREIAQPVSFPLSDEDRQLAADMMTFLENSQDPEIAAKYQLRAGVGLAA 63 Query: 50 VQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADV 104 Q+ V ++ V++ + V INPKII+ S + + + V Sbjct: 64 PQVDVSKQMSAVLVPGPEGEAPILKDVIINPKIISHSVQDAALAEGEGCLSVDREVPGYV 123 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R IT+RY D I A QHE+DHLNGILF DH+++ Sbjct: 124 PRHDRITLRYQDVEGVSHKIRLKNYPAIVCQHEIDHLNGILFFDHINKE 172 >gi|323486114|ref|ZP_08091445.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] gi|323400681|gb|EGA93048.1| polypeptide deformylase [Clostridium symbiosum WAL-14163] Length = 150 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + D ILR+ + +++++ I ++D+ML+ + +G LAA Q+G+L RLV Sbjct: 1 MAIRQMRYNDDEILRKKCKEVKEVDDKIRVMLDDMLDTLRHTENGAALAANQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI+ + I EGCLS P + R +TV+ +D Sbjct: 61 VIEYCGELLKLVNPKIIGR------SGTQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q I+ +G +A C HEL+HL+G +F+D Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144 >gi|311067971|ref|YP_003972894.1| peptide deformylase [Bacillus atrophaeus 1942] gi|310868488|gb|ADP31963.1| peptide deformylase [Bacillus atrophaeus 1942] Length = 184 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V P LR V+ ++ + + M+E + ++ G+GLAA QI Sbjct: 7 IVRDGHPALREVAENVQLPASDTEKKQLAEMIEFVKNSQDPVLAEQHQLRPGVGLAAPQI 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 + R++ I +D + NPKII+ S + S + V R A Sbjct: 67 NINKRMIAIHAEDASGTLYSYALFNPKIISHSVEKSYLTSGEGCLSVDEAIPGYVPRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ + I G LA QHE+DHLNG++F DH+ + Sbjct: 127 IRVKATTLEGEEIDIRLKGFLAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|168007592|ref|XP_001756492.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692531|gb|EDQ78888.1| predicted protein [Physcomitrella patens subsp. patens] Length = 191 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 18/164 (10%) Query: 7 VIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 V DP+L + + +++ N S I I++M++VM + G+GLAA QIGV +++V++ Sbjct: 1 VQAGDPVLHKPAEEVKRENIGSSLIEKTINDMVDVMRAGPGVGLAAPQIGVPLQIIVLED 60 Query: 64 QDHAHRKNPMVFINPKII---------------TFSDDFSVYQEGCLSIPDYRADVKRSA 108 + + + EGCLS+ YRA V+R + Sbjct: 61 TKELMSYTSPEECEAQQRSPFDLLVIINPKIEKKEGRGTAYFFEGCLSVEGYRALVERHS 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + + + A G A LQHE DHL G L++D + + Sbjct: 121 EVEVTGLGRDGRPLHLTAKGWKARILQHEYDHLQGTLYVDKMVK 164 >gi|126649799|ref|ZP_01722035.1| peptide deformylase [Bacillus sp. B14905] gi|126593518|gb|EAZ87463.1| peptide deformylase [Bacillus sp. B14905] Length = 185 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR + ++ ++ + L ++ML E GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + L R+ + LQD A + V INPKI++ S + + + + V R A Sbjct: 66 VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLSAIAFQHELDHLNGIMFYDRIN 168 >gi|317482560|ref|ZP_07941575.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316915982|gb|EFV37389.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 217 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAAPQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184 >gi|317129375|ref|YP_004095657.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] gi|315474323|gb|ADU30926.1| peptide deformylase [Bacillus cellulosilyticus DSM 2522] Length = 193 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ P LR+ + + N + ++ NM+ E G+G+A Sbjct: 3 TMKDVIREGHPTLRKRAEEVNLPANEEDTAILQNMIDFLIHSQDPEIAEKYDLRPGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF---SDDFSVYQEGCLSIPDYRADVK 105 A QI V R++ + + DH + NPKII+ + + + V Sbjct: 63 APQINVSKRMIAVRVDDHNENLIEVGLFNPKIISHSIETTHLENGEGCLSVDREVPGIVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A I V + + + GL A QHE+DHLNGI+F D + Sbjct: 123 RYARIKVEGTSIDGEKITLKLKGLPAIVFQHEIDHLNGIMFYDRIE 168 >gi|169826942|ref|YP_001697100.1| peptide deformylase 2 [Lysinibacillus sphaericus C3-41] gi|168991430|gb|ACA38970.1| Peptide deformylase 2 [Lysinibacillus sphaericus C3-41] Length = 185 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR + ++ ++ + L ++ML E GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLSDETRQLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + L R+ + LQD A + V INPKI++ S + + + + V R A Sbjct: 66 VNSLQRMFALHLQDDAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNVPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV++ + + + + GL A QHELDHLNG++F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGVMFYDRIN 168 >gi|308173421|ref|YP_003920126.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|307606285|emb|CBI42656.1| formylmethionine deformylase A [Bacillus amyloliquefaciens DSM 7] gi|328553649|gb|AEB24141.1| peptide deformylase [Bacillus amyloliquefaciens TA208] gi|328911506|gb|AEB63102.1| formylmethionine deformylase A [Bacillus amyloliquefaciens LL3] Length = 184 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +V P LR ++ ++ + + + +M+E + ++ G+GLAA Q Sbjct: 7 IVRDGHPALREIAEEVQLPASDEEKQQLADMIEFVKNSQNPELAEKYELRPGVGLAAPQT 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 V R++ + +D NPKI++ S + S + V R A Sbjct: 67 AVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVPRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ + I G A QHE+DHLNG++F DH+ + Sbjct: 127 IRVKATTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|282916464|ref|ZP_06324226.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283770276|ref|ZP_06343168.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|282319904|gb|EFB50252.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|283460423|gb|EFC07513.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] Length = 162 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVARSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|23335362|ref|ZP_00120599.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|23465752|ref|NP_696355.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189439807|ref|YP_001954888.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|227546365|ref|ZP_03976414.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622367|ref|ZP_04665398.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133213|ref|YP_004000552.1| def2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688630|ref|YP_004208364.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|39931158|sp|Q8G534|DEF1_BIFLO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName: Full=Polypeptide deformylase 1 gi|23326438|gb|AAN24991.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189428242|gb|ACD98390.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|227213346|gb|EEI81218.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514364|gb|EEQ54231.1| peptide deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517274|emb|CBK70890.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] gi|311772414|gb|ADQ01902.1| Def2 [Bifidobacterium longum subsp. longum BBMN68] gi|320459966|dbj|BAJ70586.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 217 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184 >gi|311029756|ref|ZP_07707846.1| peptide deformylase [Bacillus sp. m3-13] Length = 184 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-----KINSDIMNLIDNMLEVMYST--------DGIGLA 48 K ++ P LR V+ + + + + +++ + G+GLA Sbjct: 3 TAKDIIKEGHPTLRVVASDVSLPPSQEDSITLQKMMEYLQNSQNPDISQQYNLRPGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI V +++ + ++D + + NP+I++ S + S + D V Sbjct: 63 APQINVPKKMIAVHIRDESGTLHSYALFNPRIVSHSVEKSFLTSGEGCLSVDRDVPGLVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A +TV+ + + GL+A QHE+DHLNG++F DH++ Sbjct: 123 RYARVTVKATTLQGEEIKLRLKGLVAIVFQHEIDHLNGVMFYDHIN 168 >gi|291240947|ref|XP_002740376.1| PREDICTED: peptide deformylase-like [Saccoglossus kowalevskii] Length = 270 Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + P++ + + I LI+ M+ VM +GL+A QIGV +++V++ + Sbjct: 95 QVGDPVLRGKAVPVDPSDIGSNSINQLIEQMVAVMRRGQTVGLSAPQIGVGCQVIVMEYK 154 Query: 65 DHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +FINP++ D EGC SI Y A V+R + Sbjct: 155 KKHMQMYSPAIIQQRGIKEFPLKIFINPQMKVLDDTKVTQLEGCESIKGYSAYVERYHAV 214 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + + Q ADG A +QHE+DHL G L+ID + Sbjct: 215 EITGLSPTGEMQSWKADGFPARIIQHEMDHLQGRLYIDIMDP 256 >gi|322690616|ref|YP_004220186.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455472|dbj|BAJ66094.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] Length = 217 Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 53/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 LLPIVQAGEPVLRQRTVAYNGQLSKRTLAKLIDTMHTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP SD + + EGCLS Y+A KR IT Sbjct: 88 VEDHVRDDEDDPREIAEFPFHVIINPSYKPTSDKTASFYEGCLSFDGYQAVRKRWLDITA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + +H G A QHE DHL+G L+ID Sbjct: 148 EWDDEDGKHHSEPLHGWPARIFQHETDHLSGELYIDR 184 >gi|195444659|ref|XP_002069969.1| GK11285 [Drosophila willistoni] gi|194166054|gb|EDW80955.1| GK11285 [Drosophila willistoni] Length = 173 Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 17/158 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LRR + + + +I ID M+ V+ D +G+AA QIGV R++V++ Sbjct: 11 QIGDPVLRRRAEEVSGDKVNSPEIKETIDCMVHVLRHYDCVGVAAPQIGVPLRIIVMEFH 70 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + P NP++ +D + EGC+S+ Y A V+R + Sbjct: 71 EGKKNQFPAEIYAERKMSTLSLAVFINPELEILNDKQHKHPEGCMSVRGYSAQVERHDRV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 V+ + + +G A QHE+DHLNGI++I+ Sbjct: 131 RVKGIGMMGTPSELELEGWSARIAQHEMDHLNGIIYIE 168 >gi|21282827|ref|NP_645915.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483378|ref|YP_040602.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486054|ref|YP_043275.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257425268|ref|ZP_05601693.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427928|ref|ZP_05604326.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430561|ref|ZP_05606943.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433322|ref|ZP_05609680.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257436164|ref|ZP_05612211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282903768|ref|ZP_06311656.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905532|ref|ZP_06313387.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908508|ref|ZP_06316338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910787|ref|ZP_06318590.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913990|ref|ZP_06321777.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282918912|ref|ZP_06326647.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282924035|ref|ZP_06331711.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|283957956|ref|ZP_06375407.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|293501023|ref|ZP_06666874.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509982|ref|ZP_06668690.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526570|ref|ZP_06671255.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|295427700|ref|ZP_06820332.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208141|ref|ZP_06924572.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591341|ref|ZP_06949979.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912221|ref|ZP_07129664.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|38604914|sp|Q8NX19|DEFL_STAAW RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81649434|sp|Q6G9Z8|DEFL_STAAS RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81651281|sp|Q6GHM0|DEFL_STAAR RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|21204266|dbj|BAB94963.1| MW1098 [Staphylococcus aureus subsp. aureus MW2] gi|49241507|emb|CAG40193.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244497|emb|CAG42926.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|257271725|gb|EEV03863.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274769|gb|EEV06256.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278689|gb|EEV09308.1| peptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281415|gb|EEV11552.1| peptide deformylase [Staphylococcus aureus subsp. aureus E1410] gi|257284446|gb|EEV14566.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|282314007|gb|EFB44399.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316722|gb|EFB47096.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282322058|gb|EFB52382.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325392|gb|EFB55701.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327570|gb|EFB57853.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330824|gb|EFB60338.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595386|gb|EFC00350.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283470427|emb|CAQ49638.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus ST398] gi|283790105|gb|EFC28922.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920642|gb|EFD97705.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291096028|gb|EFE26289.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291466926|gb|EFF09444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|295128058|gb|EFG57692.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887384|gb|EFH26286.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576227|gb|EFH94943.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|298694508|gb|ADI97730.1| probable peptide deformylase 1 [Staphylococcus aureus subsp. aureus ED133] gi|300886467|gb|EFK81669.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|312438408|gb|ADQ77479.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|315194101|gb|EFU24494.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus CGS00] Length = 162 Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|195330059|ref|XP_002031726.1| GM26159 [Drosophila sechellia] gi|194120669|gb|EDW42712.1| GM26159 [Drosophila sechellia] Length = 196 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +ID M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPPEDVDSREINQIIDGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + + ++ S + + EGC+S+ Y A V+R + Sbjct: 71 EGKQEQFKPEIYEERKMSTLPLAVFINPVLEIISSQVNKHPEGCMSVRGYSAQVERYDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R + + +G A QHE+DHLNG +++D + Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171 >gi|148378868|ref|YP_001253409.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|153931530|ref|YP_001383251.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|153936227|ref|YP_001386800.1| putative peptide deformylase [Clostridium botulinum A str. Hall] gi|148288352|emb|CAL82429.1| peptide deformylase [Clostridium botulinum A str. ATCC 3502] gi|152927574|gb|ABS33074.1| putative peptide deformylase [Clostridium botulinum A str. ATCC 19397] gi|152932141|gb|ABS37640.1| putative peptide deformylase [Clostridium botulinum A str. Hall] Length = 166 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + G +AA QIG Sbjct: 1 MSTKPILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|258438742|ref|ZP_05689895.1| formylmethionine deformylase [Staphylococcus aureus A9299] gi|257848001|gb|EEV71994.1| formylmethionine deformylase [Staphylococcus aureus A9299] Length = 162 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ ++ + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII+ S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVIRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|260072680|gb|ACX30577.1| N-formylmethionyl-tRNA deformylase [uncultured SUP05 cluster bacterium] Length = 163 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 18/161 (11%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD------------------H 66 N L+ NM E MY+ DGIGLAA QI ++VV+D+ D Sbjct: 2 NDKTRILVKNMFETMYAEDGIGLAATQINQHLQIVVMDVPDSQDDYELLLKNRKNDSDKE 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + ++ + IT + EGCLS+P ++A+V+RS IT+ ++ + ++A Sbjct: 62 TNIQHHPLCFINPKITTISGHEKHIEGCLSVPGFQAEVERSNQITIEALNEQGESFTLHA 121 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LLA C+QHELDHL GILF+D+LS+LK+ + +K K+++ Sbjct: 122 SNLLAVCIQHELDHLKGILFVDYLSKLKQKRLLEKTKKVIK 162 >gi|221104975|ref|XP_002163732.1| PREDICTED: similar to peptide deformylase-like protein [Hydra magnipapillata] Length = 212 Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 21/167 (12%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + DP+LR+V++P+ + D L D ++ + +G G+AA QIGV +++ + Sbjct: 31 KVRQIGDPVLRQVAKPVDLATIVTPDFKKLCDRLVSTLRRHNGCGIAAPQIGVPLQVIAV 90 Query: 62 DLQD------------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 + V INPKI +EGCLS+ YRA Sbjct: 91 EFTGYDLKVAMDKYGSKGVSKLQMSLFPLKVMINPKIKIIDPTMLALKEGCLSVKGYRAM 150 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R+ I V ++ + + + G + +QHE+DHL G LF+D + Sbjct: 151 VPRAKEIEVEMLNVSGNTETFRSLGWTSRIIQHEVDHLQGNLFVDTM 197 >gi|195107438|ref|XP_001998319.1| GI23899 [Drosophila mojavensis] gi|193914913|gb|EDW13780.1| GI23899 [Drosophila mojavensis] Length = 203 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR S + + +I+ ++D M++V+ D +G+AA Q+GV R++ ++ + Sbjct: 18 QIGDPVLRIRSDEVSPERLDSKEILGIVDQMVKVLRHYDCVGVAAPQLGVPLRIIAMEFR 77 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + NPKI D EGC+S+ + A V R + Sbjct: 78 EEKREQFTPEVYLQRKMSTLPLSVFINPKIEIIGDMQHTQPEGCMSVRGFSARVARYDRV 137 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V + + G A QHE+DHLNGI++ID + Sbjct: 138 RVTGIGMLGTPDELELVGWSARIAQHEMDHLNGIIYIDRMD 178 >gi|312131008|ref|YP_003998348.1| peptide deformylase [Leadbetterella byssophila DSM 17132] gi|311907554|gb|ADQ17995.1| peptide deformylase [Leadbetterella byssophila DSM 17132] Length = 218 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 7/168 (4%) Query: 1 MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 M++ + DP IL +S+ I + + L M + G+G+AA Q+GV Sbjct: 40 MMR--ITQTTDPDDLQILSAISQDISPDDPLLPLLAKRMHLAVKQAGGVGIAAPQVGVNR 97 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + D + NPKI S+ + EGCLSIPD R +V RS I + Y Sbjct: 98 NAIWVQRFDKPGQPFEFYI-NPKITWKSELLQLGAEGCLSIPDTRDNVVRSYAIQLSYSQ 156 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 N H +G A QHE+DHL GILF + K K Sbjct: 157 LNGAHHTEVIEGFTAVIFQHEIDHLYGILFPQRVDEQNTQEFKKSEEK 204 >gi|89099513|ref|ZP_01172388.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89085666|gb|EAR64792.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 184 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 ++ P LR+ + + +++ + M+E + ++ GIGLA Sbjct: 3 TVADIIRDGHPSLRKTAEEVPMPPSAEDKQTLAEMMEYVRNSQNPALAEKYGLRPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QI L R++ + + D + NPKI++ S + + + + V Sbjct: 63 APQIDCLKRMIAVHVTDTDGKLYSFALFNPKIVSHSVEKAFLTSGEGCLSVDEPFPGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R A IT++ D + + + GL A QHE+DHLNG++F DH+++ I K Sbjct: 123 RYARITLKAFDIDGREVKLRLRGLPAIVFQHEIDHLNGVMFYDHINKENPFEIMK 177 >gi|218507890|ref|ZP_03505768.1| peptide deformylase [Rhizobium etli Brasil 5] Length = 155 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 3/157 (1%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 P P L+ V P+ ++ + L D++L M + G+G+ A IGV R + + + Sbjct: 1 PHPGLKTVCAPVTAFDASLAALADDLLATMRAAPGVGITAAHIGVFLR---VMVLELDRA 57 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 +++NP I S + ++ EG +S+P D+ R I RY D + + A+ Sbjct: 58 DGVRLYVNPAITWRSQETMIHAEGSVSMPGATDDITRPRAIRFRYQDVDGRMHDEAAEDF 117 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166 LA C+QHE+D L+GI ++ LSRLKRD + KK K Sbjct: 118 LAICIQHEVDQLDGIFWLQRLSRLKRDRLVKKWEKAQ 154 >gi|115757064|ref|XP_790987.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115961483|ref|XP_001180273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 186 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%) Query: 1 MVKKP---LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 M P + DP+LR S P+ + + +LI M+ VM T G+GLAA QIGV Sbjct: 1 MATPPYNHVTQVGDPVLRGKSDPVHPQDIRTKEFQDLIQKMVGVMRKTGGVGLAAPQIGV 60 Query: 55 LYRLVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100 ++ V++ + + VF+NP + SD+ V EGCLS+ + Sbjct: 61 AQQVFVMEFTEKHMKGFSEEIQKAREMEVVPLKVFVNPSLKILSDNQVVLTEGCLSLTGF 120 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A R+ + + ++ + G A LQHE DHL G L+ID + Sbjct: 121 TAATPRAHEVEITGLNEKGEPVTWRVCGYPARILQHEYDHLQGTLYIDRMD 171 >gi|82750819|ref|YP_416560.1| peptide deformylase 1 [Staphylococcus aureus RF122] gi|82656350|emb|CAI80768.1| probable peptide deformylase 1 [Staphylococcus aureus RF122] gi|323440990|gb|EGA98697.1| peptide deformylase [Staphylococcus aureus O11] gi|323442306|gb|EGA99936.1| peptide deformylase [Staphylococcus aureus O46] Length = 162 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|302332819|gb|ADL23012.1| putative polypeptide deformylase [Staphylococcus aureus subsp. aureus JKD6159] Length = 162 Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + ++ + K + + L+ ++ + MY+ + GL A QI ++ + Sbjct: 1 MAIKKLVPASHPILTKKAQAVIKFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + +NPKII S++ EG +++PD +V RS I V D N Sbjct: 61 I----DMEMEGLLQLVNPKIIRQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F + R+ Sbjct: 117 KVELTAHEDVARMILHIIDQMNGIPFTERADRI 149 >gi|299534600|ref|ZP_07047932.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] gi|298729973|gb|EFI70516.1| peptide deformylase 2 [Lysinibacillus fusiformis ZC1] Length = 185 Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 16/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR + ++ + + L ++ML E GIGLAA Q Sbjct: 6 DIIREGHPTLRTKAEEVKFPLTEETKKLAEDMLQYLINSQDPEMAEKYNLRSGIGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSA 108 + L R+ + L+D A + V INPKI++ S + + + + V R A Sbjct: 66 VNSLQRMFALHLKDEAGEQLSFVAINPKIVSHSVENTYLSAGEGCLSVDRNIPGYVPRHA 125 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ITV++ + + + + GL A QHELDHLNGI+F D ++ Sbjct: 126 RITVKFKTIDGEEKKMRLKGLPAIAFQHELDHLNGIMFYDRIN 168 >gi|194902258|ref|XP_001980657.1| GG17276 [Drosophila erecta] gi|190652360|gb|EDV49615.1| GG17276 [Drosophila erecta] Length = 238 Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DPILR+ + + K + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPILRQQAALVPKEHLDSPEIKAIVERMVKVLRKFECVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ P V + ++ + + EGC+S+ Y A+V+R + Sbjct: 113 GRVRKELPEVVYQARQMSELPLTVLINPVLTVTNYTKLKHPEGCMSVRGYSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + G A QHE+DHL G L+ DH+ R Sbjct: 173 KLTGLDQQGIQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|295395559|ref|ZP_06805753.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] gi|294971578|gb|EFG47459.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030] Length = 237 Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DP+LR + + +S ++ L+ M M + G+GLAA Q+G+ RL V + Sbjct: 43 PIVTAGDPVLRTTTARFDGQIDDSTLLELLTAMRTTMLAAPGVGLAAPQVGISLRLAVCE 102 Query: 63 LQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 INP +D + EGCLSIP Y+A V R +T+ Sbjct: 103 DPGTTSAEHAAARERTPLPFTALINPTYQPATDQLVAFYEGCLSIPGYQAVVARPRTVTL 162 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D G + HE DHL+GIL++D Sbjct: 163 TAHDHQGATITKDITGWAGRIIAHETDHLDGILYLDK 199 >gi|162455696|ref|YP_001618063.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] gi|161166278|emb|CAN97583.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56'] Length = 203 Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 25/175 (14%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M P+V+ +LR+ + P+ + +L+ M+ VM G+GLAA QIGV + Sbjct: 1 MELPPIVLAGRAVLRKPAAPVPPEEIGTKRLKHLVSTMVSVMRKAPGVGLAAPQIGVDQQ 60 Query: 58 LVVIDLQDHAH----------------------RKNPMVFINPKIITFSDDFSVYQEGCL 95 ++V++ + V + + EGCL Sbjct: 61 VIVLEDSEELMSRLTPGQRAERGRVPFRLRVIINPTLRVLAPSLPDAAGAGRATFFEGCL 120 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 S+P Y A V+R + V +D + + A G A LQHE+DHL G L++D + Sbjct: 121 SVPGYMALVERDLSVEVSGVDEDGKEVRWEATGWPARILQHEVDHLRGTLYVDRM 175 >gi|229817289|ref|ZP_04447571.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] gi|229785078|gb|EEP21192.1| hypothetical protein BIFANG_02549 [Bifidobacterium angulatum DSM 20098] Length = 217 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 68/157 (43%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + S + LID M M G+GLAA QIG+ L V Sbjct: 28 ILPIVQAGEPVLRQQTVAYTGQLSKHTLAKLIDAMRTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P V INP + + EGCLS Y+A KR I Sbjct: 88 LEDHIRDDEDDPREIGELPFHVIINPVYAPVGTETRSFYEGCLSFDGYQAVRKRWLDIDA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D N H G A QHE DHL+G L+ID Sbjct: 148 EWDDENGMHHKERMHGWPARIFQHETDHLSGELYIDK 184 >gi|70726862|ref|YP_253776.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447586|dbj|BAE05170.1| formylmethionine deformylase [Staphylococcus haemolyticus JCSC1435] Length = 183 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR + + ++ + N + M + + ++ GLA Sbjct: 3 TMKDIIRDGHPTLRAKAEDVSLPLSDEDKNTLKEMRQFLINSQDDDIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI V R++ + L D + K + I Y + + V Sbjct: 63 APQINVSKRMIAVYLPDDGNGKAYDYMLVNPKIMSHSVQRAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ +D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHFRVTIKALDIDGNEVKLRLKGYPAIIFQHEIDHLNGVMFYDYID 169 >gi|289551005|ref|YP_003471909.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180537|gb|ADC87782.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 162 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ + INP II SD+ + EG +S+P +V RS I V+ D Sbjct: 61 VDMEMEGLLQ----LINPTIIKVSDEQVIDLEGSISLPGIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A +QH +D +NGI F + ++ Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKI 149 >gi|89097400|ref|ZP_01170289.1| peptide deformylase [Bacillus sp. NRRL B-14911] gi|89087696|gb|EAR66808.1| peptide deformylase [Bacillus sp. NRRL B-14911] Length = 192 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DPILR+ + + +N + +++ M+E G+GL+A Sbjct: 11 MKDIVREGDPILRQKTAEVAVPLNQEDHVIMEMMMEYLKNSQDPELAYKYQLRPGVGLSA 70 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106 QIG R+ +D + NPKII+ S + + + V R Sbjct: 71 NQIGEDKRMFAAFFRDEKGEVKELRVFNPKIISHSAAMVYLPEGEGCLSVDREVKGYVPR 130 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++Y D + + G+ + +QHE+DHLNGI+F D +++ Sbjct: 131 YERIKIKYSDEKGEQVEMRLKGIASVIVQHEIDHLNGIMFYDRINKE 177 >gi|119026311|ref|YP_910156.1| peptide deformylase [Bifidobacterium adolescentis ATCC 15703] gi|154488206|ref|ZP_02029323.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] gi|158512525|sp|A1A2Z1|DEF_BIFAA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|118765895|dbj|BAF40074.1| peptide deformylase 1 [Bifidobacterium adolescentis ATCC 15703] gi|154083357|gb|EDN82402.1| hypothetical protein BIFADO_01780 [Bifidobacterium adolescentis L2-32] Length = 218 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 68/157 (43%), Gaps = 11/157 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR+ + + + LID M M G+GLAA QIG+ L V Sbjct: 28 IMPIVQAGEPVLRQQTIAYDGQLSRKTLDKLIDTMRTTMLEAPGVGLAATQIGLGLALAV 87 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ A INP + + EGCLS Y+A KR IT Sbjct: 88 VEDHVCEGDDGDPREAAEFPFHAIINPSYEPIGTETRSFYEGCLSFDGYQAVRKRWLDIT 147 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R+ D + + G A QHE DHL+G L+ID Sbjct: 148 ARWQDEDGNKHEEHLHGWPARIFQHETDHLSGELYID 184 >gi|315640077|ref|ZP_07895202.1| peptide deformylase [Enterococcus italicus DSM 15952] gi|315484205|gb|EFU74676.1| peptide deformylase [Enterococcus italicus DSM 15952] Length = 196 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 19/165 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVM------------YSTDGIGLAAVQI 52 ++ P LR +++ + + L +M E + + G+GLAA Q+ Sbjct: 17 IIREGHPTLREIAKEVTFPLTEQEQQLGKDMFEFLVNSQDPIKAEELHLRGGVGLAAPQV 76 Query: 53 GVLYRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106 V R++ + + P NPKI++ S + + D V R Sbjct: 77 NVSKRMIAVLVPSEQEDGEPEFAGVLYNPKIVSHSVQDACLGDGEGCLSVDRDVPGYVVR 136 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A +T+ Y D I + +QHE+DHLNG+LF D ++ Sbjct: 137 HARVTIAYQDETGAAHKIRLKNYPSIVVQHEIDHLNGVLFYDRIN 181 >gi|260905538|ref|ZP_05913860.1| peptide deformylase [Brevibacterium linens BL2] Length = 221 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 5 PLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 P+V DPILR+ +RP + ++++ L + M M + G+GLA Q+G+ + V + Sbjct: 27 PIVEAGDPILRQTTRPFDGQVDDAELAQLAEVMRATMLAAPGVGLAGPQVGIGLSMFVAE 86 Query: 63 LQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V +N + + + + EGCLSIP Y+A V R I + Sbjct: 87 DPGSLDPETAEVRQRSPMPLRVVLNAEYTPATSENVAFFEGCLSIPGYQAVVARPRSIEL 146 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +D N G A + HE DHL+GI+++D Sbjct: 147 TGVDLNGTPIAEVVAGWSARIVAHETDHLDGIMYLDK 183 >gi|195330061|ref|XP_002031727.1| GM26160 [Drosophila sechellia] gi|194120670|gb|EDW42713.1| GM26160 [Drosophila sechellia] Length = 238 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAALVPKEHMDSPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + EGC+S+ Y A+V+R + Sbjct: 113 GRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + G A QHE+DHL G L+ DH+ R Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|322805193|emb|CBZ02757.1| peptide deformylase related protein [Clostridium botulinum H04402 065] Length = 166 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|239636405|ref|ZP_04677407.1| peptide deformylase [Staphylococcus warneri L37603] gi|239597760|gb|EEQ80255.1| peptide deformylase [Staphylococcus warneri L37603] Length = 183 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++++ + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAQELSFPLSNEDKETLKAMREFLINSQDDDIAKKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI V R++ + L D + K+ + + Y + + V Sbjct: 63 APQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T++ D + + G A QHE+DHLNGI+F DH+ Sbjct: 123 HRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYDHIDD 170 >gi|318057272|ref|ZP_07975995.1| peptide deformylase [Streptomyces sp. SA3_actG] gi|318076700|ref|ZP_07984032.1| peptide deformylase [Streptomyces sp. SA3_actF] Length = 214 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVV- 60 P+V DP+LR + P E + + M G+GLAA QIGV RL V Sbjct: 24 LPIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVL 83 Query: 61 ---------IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + V +NP + + + EGCLS+P ++A V R A + Sbjct: 84 EDPATVPEEVRRVRERAPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + + G A +QHE DHL+G L++D Sbjct: 144 LRAEDEHGRALDEEVRGWSARIVQHETDHLDGTLYVDR 181 >gi|154685863|ref|YP_001421024.1| peptide deformylase [Bacillus amyloliquefaciens FZB42] gi|154351714|gb|ABS73793.1| DefB [Bacillus amyloliquefaciens FZB42] Length = 184 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 +V P LR ++ ++ + + + +M+E G+GLAA Q Sbjct: 7 IVRDGHPALREIAEEVQLPASDEEKQHLADMIEFVKNSQNPELAEKYKLRPGVGLAAPQT 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 V R++ + +D NPKI++ S + S + V R A Sbjct: 67 DVKKRMIAVHAEDAKGTLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDEPIPGYVPRYAR 126 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ + + I G A QHE+DHLNG++F DH+ + Sbjct: 127 IRVKAVTLEGEQIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKE 170 >gi|256842908|ref|ZP_05548396.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|293381229|ref|ZP_06627236.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977571|ref|ZP_07789318.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256614328|gb|EEU19529.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|290922197|gb|EFD99192.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310895310|gb|EFQ44377.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 184 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K +V DP+LR+V++P+ + L D+M+ E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAKPLTFPFSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|283470302|emb|CAQ49513.1| peptide deformylase [Staphylococcus aureus subsp. aureus ST398] Length = 183 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPFTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|27467808|ref|NP_764445.1| putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866753|ref|YP_188364.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251810645|ref|ZP_04825118.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876353|ref|ZP_06285220.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|39931130|sp|Q8CPI9|DEFL_STAES RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|81674925|sp|Q5HPX6|DEFL_STAEQ RecName: Full=Peptide deformylase-like; AltName: Full=Polypeptide deformylase-like gi|27315352|gb|AAO04487.1|AE016746_277 putative polypeptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637411|gb|AAW54199.1| polypeptide deformylase [Staphylococcus epidermidis RP62A] gi|251805805|gb|EES58462.1| possible peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281295378|gb|EFA87905.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|319401492|gb|EFV89702.1| polypeptide deformylase family protein [Staphylococcus epidermidis FRI909] gi|329730010|gb|EGG66401.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329736235|gb|EGG72507.1| peptide deformylase [Staphylococcus epidermidis VCU028] Length = 162 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|291513863|emb|CBK63073.1| peptide deformylase [Alistipes shahii WAL 8301] Length = 202 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 10/156 (6%) Query: 3 KKPLVIFPDP----ILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIG--LAAVQIG 53 ++ +P +LR+ + P+ D L ML + G +AA Q+G Sbjct: 39 IMRILTVGNPADSLVLRQKAAPVTGRMLRTDDYAVLRRRMLATVQDPQNTGVGIAAPQVG 98 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 +L R++ + D + + ++ + CLSIP V R+ I +R Sbjct: 99 ILRRMIAVQRFDKPGEPFEFYLNPEIVESSAETAPGREG-CLSIPGLAGTVVRAQRIVLR 157 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Y D + DG A QHE DHL+GIL+ D Sbjct: 158 YPDERFAEKTETIDGFTAVIFQHETDHLDGILYTDR 193 >gi|24645726|ref|NP_731494.1| CG31278 [Drosophila melanogaster] gi|23170931|gb|AAF54540.2| CG31278 [Drosophila melanogaster] gi|54650588|gb|AAV36873.1| RE57173p [Drosophila melanogaster] gi|220952214|gb|ACL88650.1| CG31278-PA [synthetic construct] Length = 238 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 ++ P +FINP + + + EGC+S+ Y A+V+R + Sbjct: 113 GRIRKELPEAVYQARQMSELPLTIFINPVLTVTNYAKLKHPEGCMSVRGYSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + G A QHE+DHL G L+ DH+ R Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|310827878|ref|YP_003960235.1| peptide deformylase [Eubacterium limosum KIST612] gi|308739612|gb|ADO37272.1| peptide deformylase [Eubacterium limosum KIST612] Length = 148 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59 M K PL DP+L++ + ++ ++ I +L++ M+ + + LAA Q+G+L +LV Sbjct: 1 MPKLPLHYNDDPVLKQKCQSVQVVDDSIRSLLNAMMNTLQLTPGAAALAANQVGILLQLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VID + + ++ + E CLS P R + VR +D N Sbjct: 61 VIDYAGYHLKLVNPEILDTEGSR------ECMESCLSFPGRHIMTLRPRAVRVRALDENG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 + G +A CL HE+DHL GI+FI+ Sbjct: 115 VVIYLDVSGEMAKCLCHEIDHLRGIVFIER 144 >gi|170761484|ref|YP_001786248.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] gi|169408473|gb|ACA56884.1| putative peptide deformylase [Clostridium botulinum A3 str. Loch Maree] Length = 166 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R S I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|315658500|ref|ZP_07911372.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496829|gb|EFU85152.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 162 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M KPL+ P+L+R ++ + + + + L+ ++ + +Y + L A QIG+ ++ + Sbjct: 1 MTVKPLIKSTHPLLKRKAQRVTEFDKSLTQLLLDIEDTLYQQEASALCASQIGIDKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + INP II SD+ + EG +S+PD +V RS I V+ D Sbjct: 61 V----DMEMEGLLQLINPTIIKASDEQVIDLEGSISLPDIYGEVARSQMIVVQSYDVQGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A +QH +D +NGI F + ++ Sbjct: 117 TLELTAYDDVARMMQHIIDQMNGIAFTNKAQKI 149 >gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii] Length = 166 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL+V + Sbjct: 6 LSIVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNP 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + VF+NP I+ F + S + ++ D N + Sbjct: 63 EGERGKGKEYVFVNPMIVKFGKEREAR----FSFIACVFVSRDRYRSELKAQDINGKKFG 118 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 G A +HE DHL G+L+ID ++ + I +++ Sbjct: 119 TAFRGWTAGIFRHEYDHLEGVLYIDQMTPKSLNSIGQEL 157 >gi|153938041|ref|YP_001390224.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|152933937|gb|ABS39435.1| putative peptide deformylase [Clostridium botulinum F str. Langeland] gi|295318318|gb|ADF98695.1| putative peptide deformylase [Clostridium botulinum F str. 230613] Length = 166 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S+ I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISKKIQKSNLDKAKQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGEDTFYIWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRARDLKSFRINK 161 >gi|300770446|ref|ZP_07080325.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] gi|300762922|gb|EFK59739.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861] Length = 430 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 6/155 (3%) Query: 1 MVKKPLVIFPD--PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLY 56 M V P+ IL+ S+ I+ + + L M + G+G+AA Q+G+ Sbjct: 253 MYVLQ-VTEPNDLEILKAPSQDIKYDDPLLDLLSQRMYATVNDPDHSGVGIAAPQVGINK 311 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + + D NPKII S EGCLSIP + DV RS I ++Y++ Sbjct: 312 NAIWVQRFDKKDTPFEFYV-NPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVN 370 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +G A QHE+DHL GILF D L Sbjct: 371 KTGDIIEENIEGFTAVIFQHEVDHLYGILFTDRLE 405 >gi|297162485|gb|ADI12197.1| peptide deformylase [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 14/160 (8%) Query: 4 KPLVIFPDPILRRVSRPIEKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P+LRR + P E S + L+ M E M + G+GLAA QIG+ R+ VI Sbjct: 20 LPIVAAGVPVLRRPALPYEGQLSAGQLDRLVRAMRETMQAAPGVGLAAPQIGIPLRIAVI 79 Query: 62 DLQDH----------AHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAF 109 + V +NP + + EGCLS+P ++A V R Sbjct: 80 EDPAEVSAEVREARGRVPLPFRVLVNPSYEPVGDPGRRAAFFEGCLSVPGWQAVVARPER 139 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 I +R D + G A +QHE DHL+G L++D Sbjct: 140 IRLRGQDERGRELDEEFAGWPARIVQHETDHLDGTLYLDR 179 >gi|323488852|ref|ZP_08094092.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] gi|323397550|gb|EGA90356.1| peptide deformylase 2 [Planococcus donghaensis MPA1U2] Length = 188 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 16/166 (9%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K ++ P LR + ++ ++ + L +++LE G+G+AA Sbjct: 4 MKDIIREGHPTLRERAEEVKFPLSEEDRQLGEDLLEYVVNSQDDELAEKYDLRPGVGIAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106 Q+ R+ + D+ +V NPKI++ S + + + V R Sbjct: 64 PQVNQAKRIFALHFDDNTGENLSLVVFNPKIVSHSVEKTYLAAGEGCLSVDRAVPGYVPR 123 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A IT++ ++ N + + GL A QHELDHLNG++F DH+ Sbjct: 124 YARITIKALNINGEEIKMRLKGLPAIAFQHELDHLNGVMFFDHIDS 169 >gi|289551097|ref|YP_003472001.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] gi|289180629|gb|ADC87874.1| Peptide deformylase [Staphylococcus lugdunensis HKU09-01] Length = 183 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ ++ ++ + + +M E + ++ GLA Sbjct: 3 TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + +++ + L D + ++ + + + Y + + V Sbjct: 63 APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVVSYSVQYAYLPTGEGCLSVDKNIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169 >gi|168014244|ref|XP_001759662.1| predicted protein [Physcomitrella patens subsp. patens] gi|162689201|gb|EDQ75574.1| predicted protein [Physcomitrella patens subsp. patens] Length = 194 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 18/163 (11%) Query: 8 IFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+L + + + + + I I++M++VM + G+GLAA QIG+ +++V++ Sbjct: 3 QAGDPVLHEPAEEVMREDIGSARIEKAINDMVDVMRAGPGVGLAAPQIGIPLQIIVLEDT 62 Query: 65 DHAHRKNPMVFINPKIITFSD---------------DFSVYQEGCLSIPDYRADVKRSAF 109 + T D + + EGCLS+ +RA V+R Sbjct: 63 KELMSYTSPEECEAQQRTPFDLLVIINPKLEMKASGGTAFFFEGCLSVAGHRALVERHLE 122 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + Q A G A LQHE DHL G+L++D + + Sbjct: 123 VEVTGLGRDGQPLHFTAKGWKARILQHEYDHLQGLLYVDRMVK 165 >gi|302870289|ref|YP_003838926.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315503435|ref|YP_004082322.1| formylmethionine deformylase [Micromonospora sp. L5] gi|302573148|gb|ADL49350.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315410054|gb|ADU08171.1| formylmethionine deformylase [Micromonospora sp. L5] Length = 187 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV 60 + +V P+P+L R ++ +++++ L +++ M + +GLAA Q+GV ++ Sbjct: 22 AVRAVVTAPEPVLSRPGPEVDPTSAEVVRLAADLVATMRVSPGCVGLAAPQVGVSAQVFA 81 Query: 61 IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DC 117 +D+ A + + + + + +EGC+S+PD DVKR++ + V Sbjct: 82 VDVTGHPKAVTVHGTFVLCNARVVEASRWKAGREGCMSVPDLTGDVKRASRLVVEGALPG 141 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + DG A LQHE+DH G+LF+D + Sbjct: 142 SGEPVRLVTDGFEARALQHEIDHCAGLLFLDRV 174 >gi|195571953|ref|XP_002103965.1| GD20713 [Drosophila simulans] gi|194199892|gb|EDX13468.1| GD20713 [Drosophila simulans] Length = 239 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + K + +I +++ M++V+ D +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAALVPKEHMDSPEIGAIVEQMVKVLRKFDCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + EGC+S+ Y A+V+R + Sbjct: 113 GRIRKELPEAVYQARQMSELPLTVFINPVLTVTNYSKLKHPEGCMSVRGYSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D + G A QHE+DHL G L+ DH+ R Sbjct: 173 KLTGLDQLGNQSELALSGWNARIAQHEMDHLEGKLYTDHMDR 214 >gi|308235345|ref|ZP_07666082.1| peptide deformylase [Gardnerella vaginalis ATCC 14018] gi|311114315|ref|YP_003985536.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] gi|310945809|gb|ADP38513.1| peptide deformylase [Gardnerella vaginalis ATCC 14019] Length = 217 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 10/157 (6%) Query: 3 KKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +P+LR+ + + + + LI M M G+GLAA QIG+ + V Sbjct: 28 VLSIVQAGEPVLRQRTVAYDGQLTRATLNKLISLMHSTMLDAPGVGLAAPQIGLGLAIAV 87 Query: 61 IDLQDHAHRKNPMVF--------INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ +P INP + EGCLS+ Y+A +R I Sbjct: 88 VEDHVRDDADDPRDIAELPFRAIINPHYEPIGTQTRSFYEGCLSVAGYQAVRQRWLDIQA 147 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D + + G A QHE DHL G L+ID Sbjct: 148 TWQDEDGKQHSERLHGWPARIFQHETDHLRGELYIDR 184 >gi|297204169|ref|ZP_06921566.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197714146|gb|EDY58180.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 218 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LR+ + + + ++ + M++ G+GLAA Q+GV R+ VI Sbjct: 24 LPIVAAGDPVLRQGIEHYDGHLDGALLSRFVEALRVTMHAAPGVGLAAPQVGVPLRIAVI 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + + V +NP + + EGCLS+P ++A V R A + Sbjct: 84 EDPAPVPEEIRLARGRVPQPFRVLVNPSYAPVGTPRAAFFEGCLSVPGWQAVVARPAEVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D N + G A +QHE DHL+G+L++D Sbjct: 144 LTCEDENGRAVDEVFSGWPARIVQHETDHLDGVLYLDR 181 >gi|73663007|ref|YP_301788.1| peptide deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495522|dbj|BAE18843.1| formylmethionine deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 183 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++ + N + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDVTLPLSEEDRNTLLAMREFLINSQDDEIATKYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + +++ + L D + K+ + + I Y + + V Sbjct: 63 APQINISKKMIAVYLPDDGNGKSYDLMLVNPKIMSHSIQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITV+ D + + + G A +QHE+DH+NGI+F DH+ Sbjct: 123 HRKNRITVKATDIDGKEVKLRLKGYPAVVVQHEIDHINGIMFYDHIDP 170 >gi|193699878|ref|XP_001950597.1| PREDICTED: peptide deformylase, mitochondrial-like [Acyrthosiphon pisum] Length = 213 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 16/161 (9%) Query: 6 LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + P+ EKI ++ NLI M +M ++ IGLAA Q+G+ +++ VI Sbjct: 27 VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86 Query: 63 LQ-------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 V+INP++ + + + E C S Y ADV R Sbjct: 87 FPRPSHYFSKEEILLKGMEHVENQVWINPELKVLNHEKVTFNESCASFKGYSADVPRYKR 146 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + +D N + + + A A +QHE+DHLNG+++ D + Sbjct: 147 VLLTGIDENGEKKTLDAKEWTARIVQHEMDHLNGVMYSDRM 187 >gi|222104825|ref|YP_002539314.1| peptide deformylase [Escherichia coli] gi|8571125|gb|AAF76758.1|AF218073_7 unknown [Escherichia coli] gi|221589252|gb|ACM18249.1| peptide deformylase [Escherichia coli] Length = 150 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 46/134 (34%), Positives = 81/134 (60%), Gaps = 3/134 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 61 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117 Query: 121 HQIIYADGLLATCL 134 + ADGLLA C+ Sbjct: 118 PFELEADGLLAICI 131 >gi|195499832|ref|XP_002097114.1| GE24677 [Drosophila yakuba] gi|194183215|gb|EDW96826.1| GE24677 [Drosophila yakuba] Length = 196 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKINS---DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + + +I +I+ M++V+ D +G+AA Q+G+ R++V++ + Sbjct: 11 QIGDPVLRQRAEEVPPEDIDSMEINQIIEGMVKVLRHYDCVGVAAPQVGIPLRIIVMEFR 70 Query: 65 DHAHRKNPMVFI--------------NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + NP++ S + + EGC+S+ + A+V+R + Sbjct: 71 EGKQEQFKPEVYEERKMSTLPLAVFINPELEIISSQVNKHPEGCMSVRGFSAEVERYDKV 130 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +R + + +G A QHE+DHLNG +++D + Sbjct: 131 RIRGIGKLGTPSEMELEGWSARIAQHEVDHLNGTIYMDKMD 171 >gi|170755594|ref|YP_001780500.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] gi|169120806|gb|ACA44642.1| putative peptide deformylase [Clostridium botulinum B1 str. Okra] Length = 166 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAKQVINDLHNTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGDDTFYLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLSWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|269959028|ref|YP_003328817.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] gi|269848859|gb|ACZ49503.1| putative polypeptide deformylase [Anaplasma centrale str. Israel] Length = 195 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 16/150 (10%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63 +L+ S P+EK++ +I L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 13 KVLQTKSSPVEKVDDEIFELVDRMAKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAA 72 Query: 64 --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 N + + + +++ + + R + ++Y Sbjct: 73 QDIKVLSGYHSLSGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGIL 145 D +I A LA C+QHELDHLNG+L Sbjct: 133 DLMGNECVIRAYNWLARCIQHELDHLNGVL 162 >gi|183602110|ref|ZP_02963478.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219683022|ref|YP_002469405.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241191342|ref|YP_002968736.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196748|ref|YP_002970303.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218603|gb|EDT89246.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620672|gb|ACL28829.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240249734|gb|ACS46674.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251302|gb|ACS48241.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177468|gb|ADC84714.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794335|gb|ADG33870.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 217 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 11/157 (7%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V +P+LR + S + LI+ M + M G+GLA QIG+ + V Sbjct: 27 VLPIVEAGEPVLREQCVRYDGQLSKHTLHKLIETMHKTMLDAPGVGLAGPQIGLNLAIAV 86 Query: 61 IDLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 ++ INP ++ + EGCLS Y+A KR I Sbjct: 87 VEDHANGDDDGDPREIAEFPFHAIINPVYRPAGEETRSFYEGCLSFDGYQAVRKRYLDII 146 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D + + + G A QHE DHL+G L+ID Sbjct: 147 AHWHDEDGKEHEEHLHGWPARIFQHETDHLSGELYID 183 >gi|168178266|ref|ZP_02612930.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] gi|182670881|gb|EDT82855.1| putative peptide deformylase [Clostridium botulinum NCTC 2916] Length = 166 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D IL R+S I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDEILYRISEKIQKSNLDKAEQVINDLHDTIVSFKNRYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGDKT-----HYFINPILEFIGEDTFHLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|224476206|ref|YP_002633812.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420813|emb|CAL27627.1| type II peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 184 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 17/169 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ +E ++++ N I M E + ++ G+A Sbjct: 3 TMKDIIRDGHPTLREKAKEVEFPLSNEDRNKIQEMHEFLVNSQDDEIAKKYGLRSGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A Q+ + R++ + L D K+ + + I Y + D V Sbjct: 63 APQLNISKRMLAVHLPDDGEGKSYELMLINPKIVSYSVQEAYLPTGEGCLSVDEDIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV+ D + + G +A +QHE+DHL+GI+F DH+ + Sbjct: 123 HRHNRVTVKAKDIDGNDINLRLKGYIAIVVQHEIDHLDGIMFYDHIDKE 171 >gi|319649756|ref|ZP_08003909.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] gi|317398510|gb|EFV79195.1| peptide deformylase [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLA 48 K ++ P LR+++ + +++ + ++ M+E + ++ IGLA Sbjct: 3 SMKDIIRDGHPTLRKIAAEVNMPPSAEEIQILKEMMEYVKNSQDPELSAKYGLRAGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKR 106 A QI V R++ + + + + +F I + + V R Sbjct: 63 APQINVSRRMIAVHVTYNQDLYSYALFNPKIISHSVQLSYLAEGEGCLSVDESIPGFVPR 122 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 A +TV+ D + GL A QHE+DHLNGI+F DH+++ Sbjct: 123 YAKVTVKGTDLQGNEVKLKLKGLPAIVFQHEIDHLNGIMFYDHINK 168 >gi|323692973|ref|ZP_08107194.1| peptide deformylase [Clostridium symbiosum WAL-14673] gi|323502974|gb|EGB18815.1| peptide deformylase [Clostridium symbiosum WAL-14673] Length = 150 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 7/150 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M + + D ILR+ + +++++ I ++D+ML+ + +G LA Q+G+L RLV Sbjct: 1 MAIRQMRYNDDEILRKRCKEVKEVDDKIRVMLDDMLDTLRHTENGAALATNQVGILKRLV 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 VI+ + I EGCLS P + R +TV+ +D Sbjct: 61 VIEYCGELLKLVNPKIIGR------SGTQECIEGCLSFPGKFVNTIRPQKVTVQALDEYG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDH 149 Q I+ +G +A C HEL+HL+G +F+D Sbjct: 115 QEVILTGEGEMAKCYCHELEHLDGEIFLDK 144 >gi|90961626|ref|YP_535542.1| peptide deformylase [Lactobacillus salivarius UCC118] gi|227890713|ref|ZP_04008518.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|301299265|ref|ZP_07205551.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|122993074|sp|Q1WU76|DEF_LACS1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|90820820|gb|ABD99459.1| Peptide deformylase [Lactobacillus salivarius UCC118] gi|227867651|gb|EEJ75072.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|300214436|gb|ADJ78852.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus salivarius CECT 5713] gi|300853109|gb|EFK80707.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 186 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 ++ +P LR ++ IE ++ + L +M+E + G+GLAA Q+ Sbjct: 7 IIRDGNPTLRARAKAIEFPLSEEDKKLAHDMMEFLENSQNPEIAKKYHLRAGVGLAAPQV 66 Query: 53 GVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVKR 106 V R+ + ++D V INP I++ S + + D V R Sbjct: 67 DVSKRMTAVLVPGIEDDDEPIFKHVLINPTILSESVQLAALGEGEGCLSVDRDIPGYVPR 126 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I +R+ D + + A +QHE+DHLNGILF DH+++ + Sbjct: 127 HDRIKLRWYDLDGNKHVERLRDYPAIVVQHEIDHLNGILFYDHINKEQ 174 >gi|315658596|ref|ZP_07911467.1| peptide deformylase [Staphylococcus lugdunensis M23590] gi|315496385|gb|EFU84709.1| peptide deformylase [Staphylococcus lugdunensis M23590] Length = 183 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ ++ ++ + + +M E + ++ GLA Sbjct: 3 TMKDIIKDGHPTLRAEAQDVDFPLSDEDKQTLKSMREFLINSQDDEIANRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + +++ + L D + ++ + + + Y + + V Sbjct: 63 APQIDISKKMIAVYLPDDGNGRSYDLMLVNPKVISYSVQYAYLPTGEGCLSVDKNIAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +TV+ D + + + G A +QHE+DHLNGI+F DH+ Sbjct: 123 HRHYRVTVKAKDIDGKDVKLRLKGYPAIVVQHEIDHLNGIMFYDHID 169 >gi|293376283|ref|ZP_06622524.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325842152|ref|ZP_08167617.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645101|gb|EFF63170.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489718|gb|EGC92076.1| peptide deformylase [Turicibacter sp. HGF1] Length = 184 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 16/167 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K ++ P L +V+ + ++ + + L+ +ML+ + +GLA Sbjct: 3 TMKDIIREGHPTLSKVASEVAIPLSKEDVQLMKDMLQFIINSQTPEVAKKYQLRESVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS---VYQEGCLSIPDYRADVK 105 A Q+ + R++ + +D + + NPKI+++S++ + + + + V Sbjct: 63 APQLNLDKRIIAVHTEDEKGKLYSLALANPKIVSYSEEITYLPMGEGCLSVDREVEGFVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R ITV + + ++ QHE+DHLNG LFIDH+ Sbjct: 123 RYRRITVEGYNLKGEKIKFRLRDYVSIVFQHEIDHLNGHLFIDHIDP 169 >gi|325956526|ref|YP_004291938.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|325333091|gb|ADZ06999.1| peptide deformylase [Lactobacillus acidophilus 30SC] Length = 184 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDKVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|293366820|ref|ZP_06613496.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319121|gb|EFE59491.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|329736680|gb|EGG72946.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 162 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVNSTHPILNKTIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|167044672|gb|ABZ09343.1| putative Polypeptide deformylase [uncultured marine microorganism HF4000_APKG7H23] Length = 179 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%) Query: 1 MVKKPLVIFPDPILRRV-----SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 M +PL PD +LR +R ++ + + LID M+E M+ +G+G+A+ Q+G Sbjct: 1 MAIRPLRYLPDQLLRTKTVSLRARDVQ--SPAVQRLIDEMIESMHHYNGVGIASNQVGSR 58 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 YR+ +I + P V +NP+I + V + CLS+P Y+ + RS + V + Sbjct: 59 YRICIIQRPEEDAV--PFVLVNPRITRREGEREVTEG-CLSLPGYQGGIVRSERVWVTAL 115 Query: 116 DCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDHL 150 D + + + GLLA L+HE DHL+G+ FIDHL Sbjct: 116 DRQGKQVQLRGETGLLAQALEHETDHLDGVAFIDHL 151 >gi|260101766|ref|ZP_05752003.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|260084410|gb|EEW68530.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 181 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L ++M+E G+GLAA Sbjct: 1 MKDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D I + V Sbjct: 61 PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R +T+ Y + + + I A HE+DHLNG LF D +++ + Sbjct: 121 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 169 >gi|195157968|ref|XP_002019866.1| GL12633 [Drosophila persimilis] gi|194116457|gb|EDW38500.1| GL12633 [Drosophila persimilis] Length = 238 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + + EGC+S+ + A+V+R + Sbjct: 113 KSLQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 173 KLSGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|315038072|ref|YP_004031640.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|312276205|gb|ADQ58845.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] Length = 184 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGESVQMAALLVPDDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|326438101|gb|EGD83671.1| hypothetical protein PTSG_12149 [Salpingoeca sp. ATCC 50818] Length = 214 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 18/165 (10%) Query: 5 PLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+LR + PI + + I NL+D++ + G GL A QIG +L V+ Sbjct: 15 KIIEAGHPVLREKAAPIQRSDITDGSIRNLVDSLSARLREDKGFGLCAPQIGESLQLFVM 74 Query: 62 DLQDHA--------------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 ++ R P+ I + + S ++E CLSIP Y A V R Sbjct: 75 EVTPDMIELETNFRDIKMLDMRPVPLTAIANPRLKYGKKMSTHRESCLSIPGYSAHVTRP 134 Query: 108 AFITVRY-MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I + + G A +QHE+DHLNG L+ D + Sbjct: 135 VDIHLTGLCAVTGTDVSVALSGWTARIVQHEVDHLNGCLYTDKMD 179 >gi|15924081|ref|NP_371615.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50] gi|15926677|ref|NP_374210.1| peptide deformylase [Staphylococcus aureus subsp. aureus N315] gi|148267584|ref|YP_001246527.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|150393639|ref|YP_001316314.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156979414|ref|YP_001441673.1| peptide deformylase [Staphylococcus aureus subsp. aureus Mu3] gi|253316344|ref|ZP_04839557.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005878|ref|ZP_05144479.2| peptide deformylase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795178|ref|ZP_05644157.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|258407113|ref|ZP_05680262.1| peptide deformylase [Staphylococcus aureus A9763] gi|258421795|ref|ZP_05684716.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|258436159|ref|ZP_05689142.1| peptide deformylase [Staphylococcus aureus A9299] gi|258443352|ref|ZP_05691695.1| peptide deformylase [Staphylococcus aureus A8115] gi|258444962|ref|ZP_05693279.1| peptide deformylase [Staphylococcus aureus A6300] gi|258449863|ref|ZP_05697961.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|258454962|ref|ZP_05702925.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|269202702|ref|YP_003281971.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282894118|ref|ZP_06302349.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|282928613|ref|ZP_06336210.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|295405895|ref|ZP_06815704.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|296276492|ref|ZP_06858999.1| peptide deformylase [Staphylococcus aureus subsp. aureus MR1] gi|297246365|ref|ZP_06930209.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|56749813|sp|P68825|DEF_STAAM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749814|sp|P68826|DEF_STAAU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749815|sp|P99077|DEF_STAAN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus Peptide Deformylase gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus Peptide Deformylase gi|75766236|pdb|2AI9|A Chain A, S.Aureus Polypeptide Deformylase gi|75766237|pdb|2AI9|B Chain B, S.Aureus Polypeptide Deformylase gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus aureus] gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp. aureus N315] gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147740653|gb|ABQ48951.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH9] gi|149946091|gb|ABR52027.1| peptide deformylase [Staphylococcus aureus subsp. aureus JH1] gi|156721549|dbj|BAF77966.1| formylmethionine deformylase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257789150|gb|EEV27490.1| polypeptide deformylase [Staphylococcus aureus A9781] gi|257841268|gb|EEV65713.1| peptide deformylase [Staphylococcus aureus A9763] gi|257842128|gb|EEV66556.1| polypeptide deformylase [Staphylococcus aureus A9719] gi|257848848|gb|EEV72833.1| peptide deformylase [Staphylococcus aureus A9299] gi|257851442|gb|EEV75381.1| peptide deformylase [Staphylococcus aureus A8115] gi|257856084|gb|EEV79002.1| peptide deformylase [Staphylococcus aureus A6300] gi|257856783|gb|EEV79686.1| peptide deformylase Pdf1 [Staphylococcus aureus A6224] gi|257862842|gb|EEV85607.1| peptide deformylase Pdf1 [Staphylococcus aureus A5937] gi|262074992|gb|ACY10965.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED98] gi|282589652|gb|EFB94738.1| polypeptide deformylase [Staphylococcus aureus A10102] gi|282763604|gb|EFC03733.1| polypeptide deformylase [Staphylococcus aureus A8117] gi|285816772|gb|ADC37259.1| Peptide deformylase [Staphylococcus aureus 04-02981] gi|294969330|gb|EFG45350.1| polypeptide deformylase [Staphylococcus aureus A8819] gi|297176731|gb|EFH35991.1| polypeptide deformylase [Staphylococcus aureus A8796] gi|312829485|emb|CBX34327.1| peptide deformylase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130323|gb|EFT86310.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS03] gi|329725200|gb|EGG61689.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21172] Length = 183 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|270284117|ref|ZP_05965571.2| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270277126|gb|EFA22980.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 221 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 11/157 (7%) Query: 4 KPLVIFPDPILRRVSRP-IEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LR + P + +++ + LI+ M M G+G+AA QIG+ V+ Sbjct: 32 LPMVEVGDPVLRAQAEPYVGQLSAKTLAKLIEAMRVTMLDAPGVGVAAPQIGLSLAFAVV 91 Query: 62 DLQ---------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + V INP D + + EGCLS P ++A +R I Sbjct: 92 EDHTSEEYDDDPREFAEFPFHVIINPSYDPVGDKTAKFFEGCLSFPGFQAVRERYVDIMA 151 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + D G A QHE DHL+G ++ID Sbjct: 152 HWTDEQGVRHDEPLHGWPARIFQHETDHLSGEIYIDK 188 >gi|52345870|ref|NP_001004979.1| peptide deformylase (mitochondrial) [Xenopus (Silurana) tropicalis] gi|49522476|gb|AAH75522.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] gi|89268627|emb|CAJ82379.1| peptide deformylase like protein [Xenopus (Silurana) tropicalis] Length = 239 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + P +I+ D +++ M+ V+ + +GL+A QIGV R++ + Sbjct: 67 GDPVLRCTAARVPCAQISHPDTQAVVNQMVRVLRAGCCVGLSAPQIGVPLRILAVAFPQQ 126 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 ++ P +FINP++ + EGC S+ + A V R + + Sbjct: 127 MYQAVPPEVRNAREMSPFPLQIFINPEMRIVDSRTLSFPEGCSSVQGFSAVVPRYYAVEL 186 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + M+ +H A G A +QHE+DHL+G+L+ID + Sbjct: 187 QGMNPKGEHVTWQAQGWAARIIQHEMDHLDGVLYIDKMDP 226 >gi|149201579|ref|ZP_01878553.1| peptide deformylase [Roseovarius sp. TM1035] gi|149144627|gb|EDM32656.1| peptide deformylase [Roseovarius sp. TM1035] Length = 149 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 + P+ +I L + M+ VM + G+GLAA Q+G + L V+D R + Sbjct: 2 PAAPLPEITDQTRALWNEMIAVMEAMPGVGLAATQLGEMQALAVVDA--STARGQAVRMA 59 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP+I+ S ++E +P A ++R +TVR+++ +A+ + GL AT +QH Sbjct: 60 NPEILHASVQLRPHEEASPCLPGVSAMIERPRAVTVRFLNADAEVEERDFVGLWATSVQH 119 Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMSKL 165 ++DHL G ++ D L R+KRDM+ ++ K+ Sbjct: 120 QIDHLQGRMYFDRLGRVKRDMLLRRARKI 148 >gi|125778498|ref|XP_001360007.1| GA16144 [Drosophila pseudoobscura pseudoobscura] gi|54639757|gb|EAL29159.1| GA16144 [Drosophila pseudoobscura pseudoobscura] Length = 238 Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + + +I +++ M++V+ + +G+AA QIGV R++ ++ + Sbjct: 53 QIGDPVLRQQAAAVPLELIEGPEIEAIVEQMVKVLRKYNCVGIAAPQIGVSLRIIAMEFK 112 Query: 65 DHAHRKNPMVFINPKIITFSDDFSV--------------YQEGCLSIPDYRADVKRSAFI 110 ++ P + ++ + + EGC+S+ + A+V+R + Sbjct: 113 KSLQKEMPEAVYQARQMSELPLTVMINPVLTVTNYSKLKHPEGCMSVRGFSAEVERFEGV 172 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D +++ + G A QHE+DHL+G L+ D + R Sbjct: 173 KLSGLDKSSKQNDLILSGWNARIAQHEMDHLDGKLYTDQMDR 214 >gi|242373312|ref|ZP_04818886.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] gi|242349022|gb|EES40624.1| peptide deformylase [Staphylococcus epidermidis M23864:W1] Length = 183 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + I+ + + +M E + ++ GLA Sbjct: 3 TMKDIIKDGHPTLREKAKELSFPISEEDKETLRSMREFLINSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI V R++ + L D + K+ + + Y + + V Sbjct: 63 APQINVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSHSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F DH+ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDHID 169 >gi|325188477|emb|CCA23012.1| unnamed protein product [Albugo laibachii Nc14] Length = 179 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%) Query: 5 PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 L+ + LRR+ P+ + ++ L + M + + DG+G+AA Q+G RL ++ + Sbjct: 9 ELIFLGNSALRRICEPVFDVKCPEMKRLAEAMRKQLIEQDGVGIAAPQLGANCRLFLMSM 68 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + ++ NPK+ FS + EGCLS+P Y VKRS I V+Y + Sbjct: 69 -EESNVSALEAVFNPKVTFFSKEMEKDFEGCLSVPHYSGIVKRSREIQVQYSTALGMKEK 127 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 +G A QHELDHLNG+LF+D + Sbjct: 128 RTLEGFPARVFQHELDHLNGVLFLDKVEP 156 >gi|242242497|ref|ZP_04796942.1| possible peptide deformylase [Staphylococcus epidermidis W23144] gi|242234071|gb|EES36383.1| possible peptide deformylase [Staphylococcus epidermidis W23144] Length = 162 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL ++ +P+ + + L++++ + +Y + ++A QIGV + + Sbjct: 1 MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I ++ + INP + + S + EG +S+P +VKRS ITV+ D N Sbjct: 61 I----DMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDH 149 + A +A + H +DHLNGI F Sbjct: 117 AVELTAYDDIARMILHMIDHLNGIQFTKR 145 >gi|157127011|ref|XP_001654759.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] gi|108884464|gb|EAT48689.1| N-formylmethionylaminoacyl-tRNA deformylase, putative [Aedes aegypti] Length = 243 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSR--PIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ + P+E + ++ L+ +M+ VM D +GLAA QIG+ +++V++ + Sbjct: 57 QIGDPVLRQTAAMVPVEAVTSPEVKYLVKHMVHVMRKYDCVGLAAPQIGISLKILVMEFE 116 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D V INP++ + + + E C S+ Y +V R A + Sbjct: 117 DRLKKHYTNAEYKIKEMETLPLTVMINPEMKITNYEKISFPESCASVKGYSGEVARYAGV 176 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D N Q + + G A QHE+DHLNG+++ D + R Sbjct: 177 LLSGLDENGQSKEMELKGWNARIAQHEMDHLNGVVYTDVMKR 218 >gi|329769034|ref|ZP_08260456.1| peptide deformylase 2 [Gemella sanguinis M325] gi|328839525|gb|EGF89101.1| peptide deformylase 2 [Gemella sanguinis M325] Length = 184 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR+ + + I+ + ++ ++LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHETLRKRAEEVKSPISDEDKEILRSLLEYVIASQDDEKAEELGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103 A QI V R++ + + D + + + + + + + + Sbjct: 63 APQINVSKRMIAVHIPDEENPEYTVSYALYNPKIISNSAAKCYLAGGEGCLSVEEEKKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + I V D N + + L A C QHE+DHLNGI+F DH+++ Sbjct: 123 VPRYSKIKVIGYDENDEKVTLVLTDLPAICFQHEIDHLNGIMFYDHINK 171 >gi|21282703|ref|NP_645791.1| peptide deformylase [Staphylococcus aureus subsp. aureus MW2] gi|49483254|ref|YP_040478.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA252] gi|49485929|ref|YP_043150.1| peptide deformylase [Staphylococcus aureus subsp. aureus MSSA476] gi|57651700|ref|YP_185964.1| peptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82750701|ref|YP_416442.1| peptide deformylase [Staphylococcus aureus RF122] gi|87161441|ref|YP_493689.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194790|ref|YP_499587.1| peptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221169|ref|YP_001331991.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509274|ref|YP_001574933.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140509|ref|ZP_03565002.1| peptide deformylase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257425143|ref|ZP_05601569.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427806|ref|ZP_05604204.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430441|ref|ZP_05606823.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257433143|ref|ZP_05609501.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257436042|ref|ZP_05612089.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|258423591|ref|ZP_05686481.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|258451962|ref|ZP_05699978.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|262048678|ref|ZP_06021560.1| peptide deformylase [Staphylococcus aureus D30] gi|262052225|ref|ZP_06024431.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|282903640|ref|ZP_06311528.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|282905409|ref|ZP_06313264.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908381|ref|ZP_06316212.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910668|ref|ZP_06318471.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282913866|ref|ZP_06321653.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282916341|ref|ZP_06324103.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282918790|ref|ZP_06326525.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282923912|ref|ZP_06331588.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282925275|ref|ZP_06332932.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|283770153|ref|ZP_06343045.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283957835|ref|ZP_06375286.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024016|ref|ZP_06378414.1| peptide deformylase [Staphylococcus aureus subsp. aureus 132] gi|293500903|ref|ZP_06666754.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|293509859|ref|ZP_06668568.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|293526445|ref|ZP_06671130.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|294848080|ref|ZP_06788827.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295427579|ref|ZP_06820211.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|39930904|sp|Q8NX78|DEF_STAAW RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748622|sp|Q6GAC3|DEF_STAAS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56748624|sp|Q6GHZ4|DEF_STAAR RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|71153335|sp|Q5HGZ3|DEF_STAAC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp. aureus MW2] gi|49241383|emb|CAG40067.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|49244372|emb|CAG42800.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus MSSA476] gi|57285886|gb|AAW37980.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus COL] gi|82656232|emb|CAI80645.1| peptide deformylase [Staphylococcus aureus RF122] gi|87127415|gb|ABD21929.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202348|gb|ABD30158.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373969|dbj|BAF67229.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|160368083|gb|ABX29054.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257272119|gb|EEV04251.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274647|gb|EEV06134.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278569|gb|EEV09188.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 68-397] gi|257281236|gb|EEV11373.1| polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus E1410] gi|257284324|gb|EEV14444.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M876] gi|257846292|gb|EEV70316.1| polypeptide deformylase [Staphylococcus aureus A9635] gi|257860177|gb|EEV83009.1| polypeptide deformylase 2 [Staphylococcus aureus A5948] gi|259159896|gb|EEW44934.1| peptide deformylase [Staphylococcus aureus 930918-3] gi|259163134|gb|EEW47694.1| peptide deformylase [Staphylococcus aureus D30] gi|269940586|emb|CBI48965.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus TW20] gi|282313884|gb|EFB44276.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C101] gi|282316600|gb|EFB46974.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus C427] gi|282319781|gb|EFB50129.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus D139] gi|282321934|gb|EFB52258.1| peptide deformylase [Staphylococcus aureus subsp. aureus M899] gi|282325273|gb|EFB55582.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WBG10049] gi|282328046|gb|EFB58328.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330701|gb|EFB60215.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus Btn1260] gi|282592551|gb|EFB97561.1| polypeptide deformylase [Staphylococcus aureus A9765] gi|282595258|gb|EFC00222.1| peptide deformylase [Staphylococcus aureus subsp. aureus C160] gi|283460300|gb|EFC07390.1| peptide deformylase [Staphylococcus aureus subsp. aureus H19] gi|283789984|gb|EFC28801.1| peptide deformylase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920517|gb|EFD97580.1| peptide deformylase [Staphylococcus aureus subsp. aureus M1015] gi|291095908|gb|EFE26169.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus 58-424] gi|291467309|gb|EFF09826.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus M809] gi|294824880|gb|EFG41302.1| polypeptide deformylase [Staphylococcus aureus A9754] gi|295127937|gb|EFG57571.1| polypeptide deformylase [Staphylococcus aureus subsp. aureus EMRSA16] gi|298694326|gb|ADI97548.1| peptide deformylase [Staphylococcus aureus subsp. aureus ED133] gi|302332701|gb|ADL22894.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus JKD6159] gi|302750915|gb|ADL65092.1| putative polypeptide deformylase 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315193760|gb|EFU24155.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS00] gi|315196121|gb|EFU26478.1| peptide deformylase [Staphylococcus aureus subsp. aureus CGS01] gi|323440640|gb|EGA98350.1| peptide deformylase [Staphylococcus aureus O11] gi|323441667|gb|EGA99313.1| peptide deformylase [Staphylococcus aureus O46] gi|329313759|gb|AEB88172.1| Peptide deformylase [Staphylococcus aureus subsp. aureus T0131] gi|329728776|gb|EGG65197.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21193] gi|329730791|gb|EGG67170.1| peptide deformylase [Staphylococcus aureus subsp. aureus 21189] Length = 183 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|327183352|gb|AEA31799.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 184 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRKVAKPLTFPLSDHYKKLADDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + + + I + V Sbjct: 64 PQVGESVQMAALLVPNDEGKIIFKEIYVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|284117858|ref|ZP_06386753.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] gi|283829473|gb|EFC33840.1| Formylmethionine deformylase [Candidatus Poribacteria sp. WGA-A3] Length = 160 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%) Query: 18 SRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV 74 + P++ + ID+M E M + +GIGLAA Q+ +L+ + D V Sbjct: 2 AEPVDPAIIPSRAYQQFIDDMFETMDAYEGIGLAAPQVSRSEQLI-VMRCDGQDAIPETV 60 Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 INP+I+ + + EGCLS+ R V R + I V+ +D + A GL C+ Sbjct: 61 LINPRIVFYGPAQAEMWEGCLSVDGLRGKVTRPSSIRVQALDREGRSVDFEASGLFGVCI 120 Query: 135 QHELDHLNGILFIDHLSRL 153 QHE+DHL G LF+D ++ L Sbjct: 121 QHEMDHLIGKLFLDRMTDL 139 >gi|227877349|ref|ZP_03995420.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256848717|ref|ZP_05554151.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295692713|ref|YP_003601323.1| peptide deformylase [Lactobacillus crispatus ST1] gi|227863017|gb|EEJ70465.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|256714256|gb|EEU29243.1| peptide deformylase [Lactobacillus crispatus MV-1A-US] gi|295030819|emb|CBL50298.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 184 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L D+M+ E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|76253777|ref|NP_001028902.1| hypothetical protein LOC619248 [Danio rerio] gi|66911060|gb|AAH97196.1| Zgc:114141 [Danio rerio] gi|148725884|emb|CAN87858.1| novel protein (zgc:114141) [Danio rerio] Length = 247 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + +E ++ +I +++VM + +GL+A QIGV R++ ++ Sbjct: 73 QVGDPVLRSHAAEVEPGAIQGPEVQKVIKTLVKVMRKLECVGLSAPQIGVPLRILALEYP 132 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + M+FINP++ ++QE C SI Y A V R + Sbjct: 133 KKMLEESSTASVEARGLVAVPLMIFINPQLRVLDGRTVIFQEACESISGYSASVPRYVSV 192 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V ++ A+ A G A LQHE+DHLNG+L+IDH+ Sbjct: 193 EVSGLNEKAEEVSWKASGWPARILQHEMDHLNGVLYIDHMDS 234 >gi|312868986|ref|ZP_07729164.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311095489|gb|EFQ53755.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 186 Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 19/171 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+ + + ++ + L M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRKRAAKVSFPLSDEDQELAKKMMEYLEVSQDPELCEKYKLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103 Q+GV ++ + + P + Y + D Sbjct: 64 PQVGVSKQMAAVLVPATEEGGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ K Sbjct: 124 VPRHDRITLRYQDTNGEKHQVRLKNYPAIVCQHEIDHLHGMLFYDHINKQK 174 >gi|325684372|gb|EGD26541.1| peptide deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 207 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++ + ++ L D+M+E G+GLAA Sbjct: 27 MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 86 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G + + + D I + V Sbjct: 87 PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVP 146 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 147 RPNKVTVHYWTADGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 194 >gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase From Staphylococcus Aureus At 1.45 A Length = 194 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + + M E + ++ GLA Sbjct: 14 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 73 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 74 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 133 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 134 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 181 >gi|170050375|ref|XP_001861255.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] gi|167872016|gb|EDS35399.1| peptide deformylase, mitochondrial [Culex quinquefasciatus] Length = 236 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 25/170 (14%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR+ ++ + + ++ L+ M++VM +GLAA QIG+ R++V++ + Sbjct: 42 QVGDPVLRQKAQLVPPEAVTSPEVRFLVQAMIDVMRKYSCVGLAAPQIGISLRILVMEFK 101 Query: 65 DH----------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102 D +V INP++ + + + E C S+ + A Sbjct: 102 DKLRDEYTSAEYKIKEMDTLPLTVGRPTFMVVLINPELKVTNYEKKSFTEACASVKGFSA 161 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +V R + + + +D N + + + G A QHE+DHL+G+++ D + R Sbjct: 162 EVPRYSEVLLSGLDENGKSKELTLKGWNARIAQHEMDHLDGVIYTDVMDR 211 >gi|299533459|ref|ZP_07046840.1| peptide deformylase [Comamonas testosteroni S44] gi|298718565|gb|EFI59541.1| peptide deformylase [Comamonas testosteroni S44] Length = 171 Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 7/154 (4%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------ 61 DP L R+++P+ + + + L+ ++L+ M++ +G GLAA QIG ++VV Sbjct: 1 MGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEPN 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 A V INP I ++ + EGCLS+P RA V R + D Sbjct: 61 PRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGDP 120 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155 +G A +QHE DHL G L+ + R Sbjct: 121 IDRTVEGFHARVVQHECDHLWGKLYPMRVRDFSR 154 >gi|161507335|ref|YP_001577289.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|172048229|sp|A8YUR0|DEF_LACH4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|160348324|gb|ABX26998.1| Peptide deformylase [Lactobacillus helveticus DPC 4571] gi|328468535|gb|EGF39537.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 184 Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 17/169 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L ++M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D I + V Sbjct: 64 PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R +T+ Y + + + I A HE+DHLNG LF D +++ + Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 172 >gi|302523131|ref|ZP_07275473.1| polypeptide deformylase [Streptomyces sp. SPB78] gi|302432026|gb|EFL03842.1| polypeptide deformylase [Streptomyces sp. SPB78] Length = 214 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 12/158 (7%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLE--VMYSTDGIGLAAVQIGVLYRLVVI 61 P+V DP+LR + P E + + M G+GLAA QIGV RL V+ Sbjct: 24 LPIVAAGDPVLRTPAAPYEGQLPEALLARLLAAMRRTMREAPGVGLAAPQIGVPLRLAVL 83 Query: 62 DLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 + V +NP + + + EGCLS+P ++A V R A + Sbjct: 84 EDPATVPEEVRRVREREPLPYRVLVNPVYEGVGERRAAFYEGCLSVPGWQAVVARHAVVR 143 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +R D + G A +QHE DHL+G L++D Sbjct: 144 LRAEDEHGTALDEEVRGWPARIVQHETDHLDGTLYVDR 181 >gi|168693535|ref|NP_001108286.1| peptide deformylase (mitochondrial) [Xenopus laevis] gi|163916521|gb|AAI57494.1| LOC100137680 protein [Xenopus laevis] Length = 240 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 17/160 (10%) Query: 10 PDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 DP+LR + + + D +++ ++ V+ + +G++A Q+GV R++ + + Sbjct: 68 GDPVLRCTAACVPSAHVSHPDTQAIVNQLVRVLSAGCCVGISAPQLGVPLRILAVAFPEQ 127 Query: 67 AHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 + P +FINP++ + + EGC S+ + A V R + + Sbjct: 128 MCQAVPPEVRQAREMSPFPLQIFINPEMRILNSQTLSFPEGCSSVQGFSAVVPRYYAVEI 187 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++ +H A G A +QHE+DHL+G+L+ID + Sbjct: 188 SGLNPKGEHITWQAQGWAARIIQHEMDHLDGVLYIDKMDP 227 >gi|195389911|ref|XP_002053615.1| GJ23993 [Drosophila virilis] gi|194151701|gb|EDW67135.1| GJ23993 [Drosophila virilis] Length = 234 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + + + ++ ++D M+ V+ D +G+AA QIG+ R++ ++ + Sbjct: 49 QIGDPVLRDRAAVVPAECVDSKEVQAIVDQMVHVLRKFDCVGIAAPQIGISLRIIAMEFR 108 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 V INPK+ + + EGC+S+ Y A+V+R + Sbjct: 109 RSIKQDLSEATYKARQMSELPLTVLINPKLTVTNYTKHKHPEGCMSVRGYSAEVERYEGV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++ H + G A QHE+DHL+G L+ DH+ R Sbjct: 169 KLSGVNRQGAHSELELSGWNARIAQHEMDHLDGKLYTDHMDR 210 >gi|259503065|ref|ZP_05745967.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168931|gb|EEW53426.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 196 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+ + + ++ + L M+E G+GLAA Sbjct: 14 MKDIVRDGDPVLRKRAAKVSFPLSDEDQTLAKKMMEYLEVSQDPQLCEKYKLRAGVGLAA 73 Query: 50 VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103 Q+GV ++ + ++ + V INP I++ S + + + D Sbjct: 74 PQVGVSKQMAAVLVPATEEDGKPEFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 133 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 134 VPRHDRITLRYQDTNGEQHQVRLKNYPAIVCQHEIDHLHGMLFYDHINK 182 >gi|51247225|pdb|1Q1Y|A Chain A, Crystal Structures Of Peptide Deformylase From Staphylococcus Aureus Complexed With Actinonin Length = 191 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 63 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 123 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 170 >gi|242242396|ref|ZP_04796841.1| peptide deformylase [Staphylococcus epidermidis W23144] gi|242234152|gb|EES36464.1| peptide deformylase [Staphylococcus epidermidis W23144] Length = 183 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++++ + M E + ++ GLA Sbjct: 3 TMKNIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI R++ + L D + K+ + I Y + + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|319401586|gb|EFV89796.1| peptide deformylase [Staphylococcus epidermidis FRI909] Length = 183 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++++ + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI R++ + L D + K+ + I Y + + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|300811352|ref|ZP_07091849.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123463|ref|YP_004033722.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497716|gb|EFK32741.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312280026|gb|ADQ60745.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 184 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++ + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G + + + D I + V Sbjct: 64 PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLGEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|253731702|ref|ZP_04865867.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733674|ref|ZP_04867839.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|297208271|ref|ZP_06924701.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297591467|ref|ZP_06950105.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300912348|ref|ZP_07129791.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304381351|ref|ZP_07364004.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253724516|gb|EES93245.1| peptide deformylase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728374|gb|EES97103.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH130] gi|296887010|gb|EFH25913.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576353|gb|EFH95069.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus MN8] gi|300886594|gb|EFK81796.1| formylmethionine deformylase [Staphylococcus aureus subsp. aureus TCH70] gi|304340334|gb|EFM06275.1| peptide deformylase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438532|gb|ADQ77603.1| peptide deformylase [Staphylococcus aureus subsp. aureus TCH60] gi|320141093|gb|EFW32940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143150|gb|EFW34940.1| peptide deformylase [Staphylococcus aureus subsp. aureus MRSA177] Length = 207 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR+ + +E + + + M E + ++ GLA Sbjct: 27 TMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLA 86 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + + D K+ + I Y + + V Sbjct: 87 APQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 146 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 147 HRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDK 194 >gi|227544835|ref|ZP_03974884.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|227185182|gb|EEI65253.1| peptide deformylase [Lactobacillus reuteri CF48-3A] Length = 183 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K + +P+LR+ + + ++ + L +M+ E G+GLAA Sbjct: 1 MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAA 60 Query: 50 VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103 Q+GV ++ + + V INP I++ S + + + D Sbjct: 61 PQVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 121 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 169 >gi|308801120|ref|XP_003075341.1| Peptide deformylase (ISS) [Ostreococcus tauri] gi|116061895|emb|CAL52613.1| Peptide deformylase (ISS) [Ostreococcus tauri] Length = 243 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 6/160 (3%) Query: 4 KPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V P LR ++ I+ +++I LI M+ VM G+GLAA Q+G+ R++V Sbjct: 34 RDVVQAGAPALRDRAKEIDPREIDSAEIQELIGEMVRVMR-ARGVGLAAPQLGIRKRVIV 92 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA--FITVRYMDCN 118 ++ + + + + + + D A R Sbjct: 93 LEDTEEGMSDSSAEELASQKRAPFACTVIINPTLERVGDASAIFFEGCLSVAGYRACAAT 152 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I A G A LQHELDHL+G+L+ D + + Sbjct: 153 GNRSIYIATGWQARILQHELDHLDGVLYTDRMESRTFRRV 192 >gi|325125510|gb|ADY84840.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 184 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++ + ++ L D+M+E + G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHHLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G + + + D I + V Sbjct: 64 PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|326692674|ref|ZP_08229679.1| peptide deformylase [Leuconostoc argentinum KCTC 3773] Length = 192 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + +P+LR+V+ + ++ + L ++M+ E Sbjct: 1 MTIRFTMDKITRDGEPVLRQVAEKVPFPLSEEHAQLAEDMMTYLVISQDEEQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94 G+GLAA Q+G ++ + + A NP II+ V + Sbjct: 61 GVGLAAPQVGESLQMAAVLIPSQDPHERDAEPYFKGTIFNPVIISESVKRAALDVGEGCL 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ ITVRY + + + + A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRANRITVRYQNEQGETKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|104773846|ref|YP_618826.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|122983972|sp|Q1GAR4|DEF_LACDA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|103422927|emb|CAI97589.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 184 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++ + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G + + + D I + V Sbjct: 64 PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 124 RPNKVTVHYWTVDGEEKTIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|329667535|gb|AEB93483.1| peptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 181 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 + +P+LR+V++P+ ++ + L D+M+ E G+GLAA Q Sbjct: 3 DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107 +G ++ + + + I + + D V R Sbjct: 63 VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 122 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +RY + + + I A HE+DHLNG LF D +++ Sbjct: 123 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 167 >gi|227893361|ref|ZP_04011166.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864776|gb|EEJ72197.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 184 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++P+ ++ L +M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAKPLTFPLSDHYKKLAKDMMEYLINSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGESVQMAALLVPDDEGKIIFKETYVNPEIISESVRQACLSEGEGCLSVDKVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|313239303|emb|CBY14251.1| unnamed protein product [Oikopleura dioica] Length = 165 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66 + DP LR +S+ +E + + +++ M V D +GLAA QIG+ R++++ LQ+ Sbjct: 18 LQIGDPKLREISKKVENYDD-LGKIVEEMKSVARKYDALGLAAPQIGINQRIILLTLQNG 76 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + I K + + + + + + Sbjct: 77 KEKIFVNPVIIGKSSKIVPSI---EGCLSVPALVASVPRHESIRLKAFDFGKGKEVTEDF 133 Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + CLQHE+DHLNGILF+D + +++MI Sbjct: 134 KEEDSFCLQHEIDHLNGILFLDRVE--EKEMIK 164 >gi|223043863|ref|ZP_03613905.1| peptide deformylase [Staphylococcus capitis SK14] gi|222442767|gb|EEE48870.1| peptide deformylase [Staphylococcus capitis SK14] Length = 183 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++ + + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKDLSFPLSEEDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI V R++ + L D + K+ + + Y + + V Sbjct: 63 APQIDVAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169 >gi|194468417|ref|ZP_03074403.1| peptide deformylase [Lactobacillus reuteri 100-23] gi|194453270|gb|EDX42168.1| peptide deformylase [Lactobacillus reuteri 100-23] Length = 186 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K + +P+LR+ + + ++ + L +M+E G+GLAA Sbjct: 4 MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMEYLEVSQDPELCEKYKLRAGVGLAA 63 Query: 50 VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103 Q+GV ++ + + V INP I++ S + + + D Sbjct: 64 PQVGVSKQMAAVLVPAPAEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|116334013|ref|YP_795540.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|122269303|sp|Q03QL3|DEF_LACBA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116099360|gb|ABJ64509.1| peptide deformylase [Lactobacillus brevis ATCC 367] Length = 186 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 K +V DP+LR+ + + ++ + L +++E + + +GLAA Sbjct: 4 MKDIVRDGDPVLRQEAADVTFPLSEEDQQLAKDLMEYLVVSQDPEQCKKYGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQD-HAHRKNPMVFINPKIITFSDDFS-----VYQEGCLSIPDYRAD 103 Q+GV ++ + + K+P + + S+ + D Sbjct: 64 PQVGVSKKMASVLVPPVEEDGKSPFTDVIINPVIISESVQAGALTEGEGCLSVDKDVPGF 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G LF DH+++ Sbjct: 124 VPRHDRITLRYYDVNGEKHQVRLKNYPAIVCQHEIDHLHGTLFYDHINK 172 >gi|153955271|ref|YP_001396036.1| Def2 [Clostridium kluyveri DSM 555] gi|146348129|gb|EDK34665.1| Def2 [Clostridium kluyveri DSM 555] Length = 191 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 16/168 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNML------------EVMYSTDGIGLA 48 K +V + IL R + + + + + +M+ + G+GL+ Sbjct: 11 TMKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLS 70 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A QIG+ R+ V+ D +++ INPKII+ S + V Sbjct: 71 ANQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVP 130 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R I V+ + + I+ +G + +QHE+DHLNGI+F + +++ Sbjct: 131 RYERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 178 >gi|222150958|ref|YP_002560111.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] gi|254767593|sp|B9EB04|DEF_MACCJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222120080|dbj|BAH17415.1| formylmethionine deformylase [Macrococcus caseolyticus JCSC5402] Length = 184 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 17/176 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR + + ++++ LID+MLE + + G+A Sbjct: 3 TMKDIIRDGHPTLRAKAEEVPLPLSTEDRQLIDDMLEFLKMSQDEEQSRKYQLRSGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A Q+ R++VI D + I Y + V Sbjct: 63 APQLNHKKRMLVIHFYDEKKGDYVTHQLINPKIISHSVEKSYLPTGEGCLSVDEAVPGIV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R A ITV+ + + + A QHE+DHLNG++F DH+ + + K Sbjct: 123 HRYARITVKAYTPDGEEVKLRLKDFSAIVAQHEIDHLNGVMFYDHIDKADPMKVQK 178 >gi|227535207|ref|ZP_03965256.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187091|gb|EEI67158.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 181 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 1 MKDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105 Q+G + + + + + I + + D V Sbjct: 61 PQVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R+ IT+ Y + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 121 RADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 168 >gi|86140860|ref|ZP_01059419.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] gi|85832802|gb|EAQ51251.1| putative polypeptide deformylase protein [Leeuwenhoekiella blandensis MED217] Length = 219 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 5/161 (3%) Query: 1 MVKKPLVIFPDPIL-RRVSRPIEKINSD--IMNLIDNMLEVMYSTDG--IGLAAVQIGVL 55 M + D +L R S + D +MNLID M + + G+AA Q+G+L Sbjct: 47 MRVFKITKESDSLLLRTPSEAVTVDPKDTVLMNLIDRMYTTVRDSLSLGAGIAAPQVGIL 106 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+ + D ++ + R+ I V Y Sbjct: 107 KRIAWVQRFDKEGFPFEVIINPVIKQYSKKKQDCPEGCLSIPGRRDTLSTRAYAILVEYD 166 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 +A H+I + A QHE+DHLNGIL++DHL + +D Sbjct: 167 KPDASHEIEMVEDFTAVVFQHEIDHLNGILYLDHLKQEIKD 207 >gi|300909945|ref|ZP_07127405.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|300892593|gb|EFK85953.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 186 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K + +P+LR+ + + ++ + L +M+ E G+GLAA Sbjct: 4 MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAA 63 Query: 50 VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103 Q+GV ++ + + V INP I++ S + + + D Sbjct: 64 PQVGVSKQMAAVLVPAPAEGEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|228475040|ref|ZP_04059768.1| peptide deformylase [Staphylococcus hominis SK119] gi|314936623|ref|ZP_07843970.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] gi|228271025|gb|EEK12413.1| peptide deformylase [Staphylococcus hominis SK119] gi|313655242|gb|EFS18987.1| peptide deformylase [Staphylococcus hominis subsp. hominis C80] Length = 162 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV P+L + ++ I + ++ L+ ++ + +YS + L+A QIGV R+ + Sbjct: 1 MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + INPKI T S++ + EG +++P+ +V+RS ITV D Sbjct: 61 I----DMEAEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGH 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D L+GI F + ++ Sbjct: 117 EIELTAYDDVARMILHIIDQLDGIPFTERAIKI 149 >gi|27467707|ref|NP_764344.1| peptide deformylase [Staphylococcus epidermidis ATCC 12228] gi|57866596|ref|YP_188262.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251810544|ref|ZP_04825017.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|282876551|ref|ZP_06285416.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|32129485|sp|Q8CPN4|DEF_STAES RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81674995|sp|Q5HQ78|DEF_STAEQ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase [Staphylococcus epidermidis ATCC 12228] gi|57637254|gb|AAW54042.1| peptide deformylase [Staphylococcus epidermidis RP62A] gi|251805955|gb|EES58612.1| peptide deformylase [Staphylococcus epidermidis BCM-HMP0060] gi|281294639|gb|EFA87168.1| peptide deformylase [Staphylococcus epidermidis SK135] gi|329732863|gb|EGG69209.1| peptide deformylase [Staphylococcus epidermidis VCU144] gi|329734227|gb|EGG70543.1| peptide deformylase [Staphylococcus epidermidis VCU028] gi|329735535|gb|EGG71823.1| peptide deformylase [Staphylococcus epidermidis VCU045] Length = 183 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++++ + M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI R++ + L D + K+ + I Y + + V Sbjct: 63 APQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 123 HRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 169 >gi|109899738|ref|YP_662993.1| peptide deformylase [Pseudoalteromonas atlantica T6c] gi|109702019|gb|ABG41939.1| peptide deformylase [Pseudoalteromonas atlantica T6c] Length = 188 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 10/159 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD---IMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M+ + + ILR ++ + + + + +D +L M +G+G+AA Q+ Sbjct: 1 MM--KIAQVGEVILRTPAKSVSQTDIETGAFQEFVDALLATMQEANGVGIAAPQVFDERA 58 Query: 58 LVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +++I +A P+V INPK+I S++ EGCLS+P R ++R+ ++ + Sbjct: 59 VMIIASRPSPRYPNAPDMEPLVLINPKVIQSSEETVKDWEGCLSVPGLRGFIRRATWVEI 118 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 Y+ + DG +A HE DHL G ++DH+ Sbjct: 119 EYLQRDGTPATQRLDGFVARIFLHEFDHLIGKTWLDHVE 157 >gi|219855695|ref|YP_002472817.1| hypothetical protein CKR_2352 [Clostridium kluyveri NBRC 12016] gi|219569419|dbj|BAH07403.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 180 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 16/167 (9%) Query: 3 KKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K +V + IL R + + + + + +M+ + G+GL+A Sbjct: 1 MKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLSA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKR 106 QIG+ R+ V+ D +++ INPKII+ S + V R Sbjct: 61 NQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVPR 120 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I V+ + + I+ +G + +QHE+DHLNGI+F + +++ Sbjct: 121 YERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKE 167 >gi|271969762|ref|YP_003343958.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] gi|270512937|gb|ACZ91215.1| formylmethionine deformylase [Streptosporangium roseum DSM 43021] Length = 174 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLVVID 62 + L+ P P+L +R ++ + ++ ++L M GLAA QIG+ +RL+ +D Sbjct: 10 RELIAAPHPVLTARARAVDPADPRVVVAAADLLATMRRARHCTGLAAPQIGLDWRLLSVD 69 Query: 63 L--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119 + A + + + + + +EGCLS+P DV R+ ITVR Sbjct: 70 VSLHPGARSCAGELVVANPRLVAASRWEPAREGCLSVPGLTGDVLRATRITVRGERPGTG 129 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I AD A C+QH+LDHL+G+LF+D ++R Sbjct: 130 APVTIDADAFEARCIQHQLDHLDGVLFLDRVTR 162 >gi|326331194|ref|ZP_08197489.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] gi|325951015|gb|EGD43060.1| peptide deformylase [Nocardioidaceae bacterium Broad-1] Length = 178 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61 +V P +L + ++ + + L +++ M + +GLAA Q+GV R+ + Sbjct: 14 VLDVVRAPAHVLSVPGKDVDPAAPETVQLAADLIATMRVSPGCVGLAADQVGVSARIFCV 73 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ--EGCLSIPDYRADVKRSAFITVRYM-DCN 118 D+ H + + + EGC+S+PD DVKR++ + VR Sbjct: 74 DVSTHVKTRTHHGTYVLCNAEVVEASRNEKAREGCMSVPDLTGDVKRASRLKVRGQLPVT 133 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I D A CLQHE+DH NG+LFID + Sbjct: 134 GETVEIVTDAFEARCLQHEIDHTNGLLFIDRV 165 >gi|42518919|ref|NP_964849.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227889778|ref|ZP_04007583.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|268319683|ref|YP_003293339.1| peptide deformylase [Lactobacillus johnsonii FI9785] gi|81703847|sp|Q74JW2|DEF_LACJO RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|41583205|gb|AAS08815.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|227849642|gb|EEJ59728.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|262398058|emb|CAX67072.1| peptide deformylase [Lactobacillus johnsonii FI9785] Length = 184 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 + +P+LR+V++P+ ++ + L D+M+ E G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLSDEYKKLADDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107 +G ++ + + + I + + D V R Sbjct: 66 VGESVQMAALLVPNDKGEIIFKEVFVNPKILSESVRRTCLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +RY + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIRYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|332172628|gb|AEE21882.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 183 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + IL ++++P+ + + +D +L M + +G+G+AA Q+ +++I Sbjct: 2 KIAQVGETILHQIAKPVAEEAIKSDAFQAFVDELLSTMQNANGVGIAAPQVFDERAVMII 61 Query: 62 -----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +A P+V INPK+I + + EGCLS+P R ++R++++ + Y Sbjct: 62 ASRPSSRYPNAPEMEPLVLINPKVIQSAQESVKDWEGCLSVPGLRGYIRRASWVEIAYQQ 121 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + G +A HE DHL G ++DH+ Sbjct: 122 RDGSQVSTRLSGFVARIFLHEFDHLIGKTWLDHVE 156 >gi|330685497|gb|EGG97150.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 162 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + P+E + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANPVEHFDDQLKQTLMDIEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + INPKI S++ EG +S+P+ +V+R+ I V D N Sbjct: 61 V----DMEMEGLLQLINPKIKNQSEETITDLEGSVSLPNVFGEVERNKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A +A + H +D LNGI F + + KR + ++M Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTE---KAKRILSEEEME 156 >gi|187777978|ref|ZP_02994451.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] gi|187774906|gb|EDU38708.1| hypothetical protein CLOSPO_01570 [Clostridium sporogenes ATCC 15579] Length = 166 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGI-----GLAAVQIGV 54 M K +++ D IL R+S I+K N +I+++ + + S +AA QIG Sbjct: 1 MPTKSILLLGDEILYRISEEIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L FINP + DD + C+S P V+R V Y Sbjct: 61 SVRIIYMHLGYKT-----HYFINPVLEFIGDDTFQLWDDCMSFPGLEVYVERYKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + N + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLNWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|314933288|ref|ZP_07840653.1| peptide deformylase [Staphylococcus caprae C87] gi|313653438|gb|EFS17195.1| peptide deformylase [Staphylococcus caprae C87] Length = 183 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 17/167 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K ++ P LR ++ + ++ + + +M E + ++ GLA Sbjct: 3 TMKDIIRDGHPTLREKAKELSFPLSEEDKETLRSMREFLINSQDEETAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R++ + L D + K+ + + Y + + V Sbjct: 63 APQIDLAKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLPTGEGCLSVDENIPGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNG++F D++ Sbjct: 123 HRHNRVTIKAQDIDGNEVKLRLKGYPAIVFQHEIDHLNGVMFYDYID 169 >gi|116494793|ref|YP_806527.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|191638306|ref|YP_001987472.1| peptide deformylase [Lactobacillus casei BL23] gi|239631609|ref|ZP_04674640.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066358|ref|YP_003788381.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|122263789|sp|Q039N7|DEF_LACC3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238693032|sp|B3WE13|DEF_LACCB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116104943|gb|ABJ70085.1| peptide deformylase [Lactobacillus casei ATCC 334] gi|190712608|emb|CAQ66614.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Lactobacillus casei BL23] gi|239526074|gb|EEQ65075.1| peptide deformylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438765|gb|ADK18531.1| N-formylmethionyl-tRNA deformylase [Lactobacillus casei str. Zhang] gi|327382333|gb|AEA53809.1| Peptide deformylase [Lactobacillus casei LC2W] gi|327385534|gb|AEA57008.1| Peptide deformylase [Lactobacillus casei BD-II] Length = 184 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 4 MKDITRDGAKVLRETAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105 Q+G + + + + + I + + D V Sbjct: 64 PQVGQSKAMAAVLVPGDDNEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R+ IT+ Y + +H+ I A QHE+DHLNG+LF DH+++ Sbjct: 124 RADRITISYQNEAGEHKKIRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171 >gi|323341737|ref|ZP_08081970.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464162|gb|EFY09355.1| peptide deformylase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 190 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 21/179 (11%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52 +V+ P+P+LR P+ ++ + N ++NML E G+AA QI Sbjct: 9 IVLDPNPVLREKCEPVSFPLSEEDRNTLENMLQYVRDSRDPELAEKYNLQPANGIAAPQI 68 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK------- 105 GV ++ + + N + SV Q + K Sbjct: 69 GVAKQMTALVVDLEDKHGNVKTVEYALVNPKIVSNSVKQCALSYGEGCLSIRKDYPGLVR 128 Query: 106 -RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + Y Q I A +LA LQHE+DHLNG+LF DH+ M K + Sbjct: 129 RSQRIKVLAYDMITDQRIEIVAKDILAIVLQHEIDHLNGVLFYDHIDSKDPWMAEKGLK 187 >gi|241896030|ref|ZP_04783326.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] gi|241870761|gb|EER74512.1| peptide deformylase [Weissella paramesenteroides ATCC 33313] Length = 195 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 28/178 (15%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 +V D +LR + +E ++ ++ NM+E G+GLAA Q Sbjct: 6 EIVRDGDKVLRERAAKVEFPLSDEVKEASKNMMEYLVVSQDEKENEKYGLRPGVGLAAPQ 65 Query: 52 IGVLYRLVVIDL--------QDHAHRKNPMVFINPKIITFSDDFS-------VYQEGCLS 96 +G+ + I + QD + F S + + Sbjct: 66 VGISQQFTSILIPSDDVEELQDKKTTDSDYFFKGTIYNPVITRQSVKKGALSMGEGCLSV 125 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D V RS ITV++ D N Q + +G A QHE+DHL+G L+ DH+++ + Sbjct: 126 DNDLPGYVARSYRITVKFQDENGDKQELRLEGYPAIVFQHEIDHLHGTLYYDHINKTE 183 >gi|116513853|ref|YP_812759.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275377|sp|Q04B51|DEF_LACDB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116093168|gb|ABJ58321.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 184 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LR+V++ + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRQVAQKLTFPLSDHYRKLADDMMEYLVNSQDPKIAAKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G + + + D I + V Sbjct: 64 PQVGEGVSMAALLVPDDKGEIIFKEVYVNPEIISESVRKTCLSEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R +TV Y + + + I G A HE+DHLNG LF D +++ Sbjct: 124 RPNKVTVHYWTVDGEEKAIRLKGYPAIVSGHEIDHLNGHLFYDRINKE 171 >gi|227431846|ref|ZP_03913870.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352388|gb|EEJ42590.1| peptide deformylase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 192 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTD 43 M + + DP+LR+ + + ++ + L +M+E Sbjct: 1 MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGC 94 G+GLAA Q+G R+ ++I D + F SV + Sbjct: 61 GVGLAAPQVGYSLRMSSILIPALDPEDTTDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|293366921|ref|ZP_06613596.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318896|gb|EFE59267.1| peptide deformylase [Staphylococcus epidermidis M23864:W2(grey)] Length = 180 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 17/166 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAA 49 K ++ P LR ++ + ++++ + M E + ++ GLAA Sbjct: 1 MKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVGLAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 QI R++ + L D + K+ + I Y + + V Sbjct: 61 PQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIMSYSVQEAYLPTGEGCLSVDENIPGLVH 120 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R +T++ D + + G A QHE+DHLNGI+F D++ Sbjct: 121 RHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYID 166 >gi|241888581|ref|ZP_04775888.1| peptide deformylase [Gemella haemolysans ATCC 10379] gi|241864604|gb|EER68979.1| peptide deformylase [Gemella haemolysans ATCC 10379] Length = 184 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + + I+ + ++ +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103 A QI V R++ + + D ++ + + + + D + Sbjct: 63 APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSATKCYLAGGEGCLSVDKDIKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L A C QHE+DHLNG++F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|299822499|ref|ZP_07054385.1| peptide deformylase [Listeria grayi DSM 20601] gi|299816028|gb|EFI83266.1| peptide deformylase [Listeria grayi DSM 20601] Length = 182 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V P LR+V+ + ++ + L ML E G+GLAA Q Sbjct: 6 DIVREGHPALRKVADEVTFPLSQEEKELGREMLTFLKNSQDEEIAEKYGLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109 + VL R++ I ++D + ++ + + + V R Sbjct: 66 LAVLKRIIAIHIEDEDRTYSYTLYNPKIRSHSVQEACLAGGEGCLSVDREVPGFVVRKER 125 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +T+ D + + A +QHE+DHLNG++F DH++ Sbjct: 126 VTIEAFDEDGNPIKLRLKSYPAIVVQHEIDHLNGVMFYDHIND 168 >gi|264679313|ref|YP_003279220.1| peptide deformylase [Comamonas testosteroni CNB-2] gi|262209826|gb|ACY33924.1| peptide deformylase [Comamonas testosteroni CNB-2] Length = 173 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 7/153 (4%) Query: 8 IFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI----- 61 DP L R+++P+ + + + L+ ++L+ M++ +G GLAA QIG ++VV Sbjct: 2 KMGDPRLLRLAKPVTEFDTDALHLLLKDLLDTMHAANGAGLAAPQIGEDLQMVVFGSGEP 61 Query: 62 -DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 A V INP I ++ + EGCLS+P RA V R + D Sbjct: 62 NPRYPDAPIVPRTVLINPVITPIGEEEQLDWEGCLSVPGLRAMVPRWNKVRYTGFDIYGD 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 DG A +QHE DHL G L+ + Sbjct: 122 PIDRTVDGFHARVVQHECDHLWGKLYPMRVRDF 154 >gi|329767966|ref|ZP_08259477.1| peptide deformylase 2 [Gemella haemolysans M341] gi|328838451|gb|EGF88059.1| peptide deformylase 2 [Gemella haemolysans M341] Length = 184 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + + I+ + ++ +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHATLRARAEEVKSPISDEDKAILRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFI-----NPKIITFSDDFSVYQEGCLSIPDYRAD 103 A QI V R++ + + D ++ + + + + + + Sbjct: 63 APQINVSKRMIAVHIPDEEFPEDTVSYALYNPKIISNSAAKCYLAGGEGCLSVDKEIKGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L A C QHE+DHLNG++F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKVTLTLTDLPAICFQHEIDHLNGVMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|227509423|ref|ZP_03939472.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191135|gb|EEI71202.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 188 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L +++E G+GLAA Q Sbjct: 6 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHDLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103 +GV + + + + + II + + D Sbjct: 66 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|170744220|ref|YP_001772875.1| peptide deformylase [Methylobacterium sp. 4-46] gi|168198494|gb|ACA20441.1| formylmethionine deformylase [Methylobacterium sp. 4-46] Length = 165 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 3/148 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M PL+ +PD LRR P + + ++ E + + IGL +G RL V Sbjct: 1 MAILPLLRYPDACLRRAVPPAALPDPRVAAFAADLAETLDAHRAIGLTGPHVGASIRLTV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I L M +NP+++ S + + ++EG +++P +V+R A + VRY D + Sbjct: 61 IRLGP---GAPLMTCVNPQVVHASPETARHREGSVAMPGVDEEVERPARVRVRYQDLDGT 117 Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148 + + A+G LA CLQHE+D L+G+ + + Sbjct: 118 AREVEAEGFLAACLQHEIDQLDGVFWTE 145 >gi|84060919|ref|YP_444131.1| hypothetical protein O2ColV76 [Escherichia coli] gi|3288155|emb|CAA11508.1| hypothetical protein [Escherichia coli] gi|76781994|gb|AAX22071.2| conserved hypothetical protein [Escherichia coli] Length = 149 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 80/134 (59%), Gaps = 4/134 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY + IGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMY-AESIGLAATQVDIHQRIIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ID+ ++ + + + + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 60 IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 116 Query: 121 HQIIYADGLLATCL 134 + ADGLLA C+ Sbjct: 117 PFELEADGLLAICI 130 >gi|256846996|ref|ZP_05552442.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256715660|gb|EEU30635.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 186 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 19/170 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 K +V DP+LR+ + + + D ++E + + +GLAA Sbjct: 4 MKDIVRDGDPVLRQRAAKVSFPLTDDEREFAHQLMEYLEVSQDPELCKKYGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103 Q+GV ++ + + P + Y + D Sbjct: 64 PQVGVSKQMASVLVPADEEGGKPQFKDVIINPVIISESVQYGVLTEGEGCLSVDKDIPGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R IT++Y D + + I A QHE+DHL+G+LF DH+++ Sbjct: 124 VPRHDRITLKYQDVDGETHQIRLKHYPAIVCQHEIDHLHGVLFYDHINKE 173 >gi|227538920|ref|ZP_03968969.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241123|gb|EEI91138.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 432 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Query: 1 MVKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 M + D IL+ S+ I+ + + L M + G+G+AA Q+G+ Sbjct: 255 MYVLQVTKTNDLAILKATSQDIKYDDPLLELLSQRMYATVNDPDHSGVGIAAPQVGINKN 314 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 + + D NPKII S EGCLSIP + DV RS I ++Y++ Sbjct: 315 AIWVQRFDKKDTPFEFYV-NPKIIWRSKLTRKGAEGCLSIPSRKEDVLRSYAIRLQYVNK 373 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +G A QHE+DHL GILF D L Sbjct: 374 TGDIIEENIEGFTAVIFQHEVDHLYGILFTDRLE 407 >gi|91092264|ref|XP_967363.1| PREDICTED: similar to N-formylmethionylaminoacyl-tRNA deformylase, putative [Tribolium castaneum] gi|270001218|gb|EEZ97665.1| hypothetical protein TcasGA2_TC016210 [Tribolium castaneum] Length = 223 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP LR VS I + +I LI+ M VM + + +GL+A Q+GV +L +++ Sbjct: 35 VVQIGDPTLRTVSDVIPRDLIKLPEIKFLINRMKNVMKNHNSVGLSAPQVGVPLQLFLVE 94 Query: 63 LQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 V INP+I + E C S+ + A+V R Sbjct: 95 CNAKHLNEYSPQEQKVKEMKVVPFKVVINPQIKITDYTKLTFVESCASVKGFHAEVPRYK 154 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + D Q + G A +QHE+DHLNG ++ D + R Sbjct: 155 SLKLEAFDEENQKFEMELTGWPARIVQHEVDHLNGKIYTDIMDR 198 >gi|310644037|ref|YP_003948795.1| peptide deformylase 2 [Paenibacillus polymyxa SC2] gi|309248987|gb|ADO58554.1| Peptide deformylase 2 [Paenibacillus polymyxa SC2] Length = 188 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 15/165 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V +PILR+ P+ ++ + + + ML+ + ++ G+GL+A Sbjct: 7 KDIVREGEPILRKKVDPVCLPLSEEDLQQMQWMLDYLKNSQNEELATRYELRPGVGLSAN 66 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRADVKRSA 108 Q+G+ R+ I +D +F + T + V R Sbjct: 67 QVGLNKRMCAIYYEDGDQTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYIPGYVPRYE 126 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 127 KIRIKANLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 171 >gi|209736128|gb|ACI68933.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 249 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 28/179 (15%) Query: 2 VKKPL-----------VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGL 47 +K+ + +P+LR + ++ + +I M++VM + +GL Sbjct: 58 MKRKIKPPPSPPYPHVCQVGEPVLRAQAAAVDPGAVQGPAVQEVIHTMVKVMRKFECVGL 117 Query: 48 AAVQIGVLYRLVVIDLQDHAHRK--------------NPMVFINPKIITFSDDFSVYQEG 93 +A Q+GV R++ ++ + +FINP++ ++QE Sbjct: 118 SAPQVGVPLRILALEFPERMLEDSLPAAREARGLTAVPLRIFINPQLRVLDGRTVLFQEA 177 Query: 94 CLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 C SI + A V R + V ++ A+ G A LQHE+DHL+G+L+ID + Sbjct: 178 CESISGFSATVPRYLSVEVSGLNEKAEPVTWQVSGWPARILQHEMDHLDGVLYIDRMDS 236 >gi|116618440|ref|YP_818811.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097287|gb|ABJ62438.1| peptide deformylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 192 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTD 43 M + + DP+LR+ + + ++ + L +M+E Sbjct: 1 MTIRFTMDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRL--VVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGC 94 G+GLAA Q+G R+ ++I D + F SV + Sbjct: 61 GVGLAAPQVGYSLRMSSILIPALDPEDTIDEPYFKGTIFNPVIISESVKRGALNVGEGCL 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ ITVRY D + Q I A QHE+DHL+G L+ DH++ Sbjct: 121 SVDEDVPGFVPRAYRITVRYQDEDGNKQTIKLRDYPAIVFQHEIDHLHGHLYYDHIN 177 >gi|23098865|ref|NP_692331.1| peptide deformylase [Oceanobacillus iheyensis HTE831] gi|32363150|sp|Q8ER96|DEF_OCEIH RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22777092|dbj|BAC13366.1| formylmethionine deformylase [Oceanobacillus iheyensis HTE831] Length = 183 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K +V P L R + +E ++ D L+++M+ E G+G+A Sbjct: 3 TMKDIVREGHPSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVK 105 A Q+G+ +++ I +D + M +NPKII+ S + S + V Sbjct: 63 APQLGIEKQIIAIHFEDIDGKLYSMGLVNPKIISHSVEQSYLSSGEGCLSVDRPVEGYVP 122 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT++ D N Q + G A QHE+DH+NGI+F D ++ Sbjct: 123 RHARITIKATDINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRIN 168 >gi|118780782|ref|XP_310421.3| AGAP003861-PA [Anopheles gambiae str. PEST] gi|116131029|gb|EAA06035.3| AGAP003861-PA [Anopheles gambiae str. PEST] Length = 241 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + I + ++++ L ++ +VM + +GLAA Q+G+ R V++ Sbjct: 53 IVQLGDPVLRVPANAIPEKELQSAEVQYLARHLTKVMRAYRCVGLAAPQLGLSLRAFVME 112 Query: 63 LQDH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +D + +NP++ + + ++ E C S+ YRADV R Sbjct: 113 FKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHTEACESVRGYRADVPRYR 172 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++ D Q + G A QHE+DHLNGI++ D ++R Sbjct: 173 EILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 216 >gi|227512180|ref|ZP_03942229.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084574|gb|EEI19886.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 185 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L N++E G+GLAA Q Sbjct: 3 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103 +GV + + + + + II + + D Sbjct: 63 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 123 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 178 >gi|220702375|pdb|3CMD|A Chain A, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium gi|220702376|pdb|3CMD|B Chain B, Crystal Structure Of Peptide Deformylase From Vre-E.Faecium Length = 196 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%) Query: 1 MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ ++ +P LR V++ + ++ + ++L MLE + ++ G+ Sbjct: 9 MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 68 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 GLAA Q+ + R++ + + + SV + Sbjct: 69 GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 128 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 129 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 182 >gi|254994774|ref|ZP_05276964.1| Peptide deformylase [Anaplasma marginale str. Mississippi] gi|255002896|ref|ZP_05277860.1| Peptide deformylase [Anaplasma marginale str. Puerto Rico] gi|255004027|ref|ZP_05278828.1| Peptide deformylase [Anaplasma marginale str. Virginia] Length = 195 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 14 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 73 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + N + + + +++ + + R + ++Y D Sbjct: 74 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 133 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145 +I A LA C+QHE+DHLNG+L Sbjct: 134 LMGNECVIRAYNWLARCIQHEMDHLNGVL 162 >gi|56416555|ref|YP_153629.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222474923|ref|YP_002563338.1| Peptide deformylase [Anaplasma marginale str. Florida] gi|56387787|gb|AAV86374.1| hypothetical protein AM275 [Anaplasma marginale str. St. Maries] gi|222419059|gb|ACM49082.1| Peptide deformylase [Anaplasma marginale str. Florida] Length = 196 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 13 ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL--------- 63 +L+ S PIEK++ +++ L+D M +V+ ++ +G +A+Q+GV R+ I++ Sbjct: 15 VLQTKSSPIEKVDDEVLGLVDRMTKVINTSGTVGFSAIQLGVSKRVFAINVASGLFDAAQ 74 Query: 64 -------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + N + + + +++ + + R + ++Y D Sbjct: 75 DIKVLSGYHSLNGNNLVCVNPRIVSFSGETVVLFEGCLSASSYGLIGISRPKHLDLKYTD 134 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGIL 145 +I A LA C+QHE+DHLNG+L Sbjct: 135 LMGNECVIRAYNWLARCIQHEMDHLNGVL 163 >gi|199598173|ref|ZP_03211595.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229552108|ref|ZP_04440833.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|258508310|ref|YP_003171061.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|258539523|ref|YP_003174022.1| peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|199590934|gb|EDY99018.1| peptide deformylase [Lactobacillus rhamnosus HN001] gi|229314541|gb|EEN80514.1| peptide deformylase [Lactobacillus rhamnosus LMS2-1] gi|257148237|emb|CAR87210.1| Peptide deformylase [Lactobacillus rhamnosus GG] gi|257151199|emb|CAR90171.1| Peptide deformylase [Lactobacillus rhamnosus Lc 705] gi|259649627|dbj|BAI41789.1| peptide deformylase [Lactobacillus rhamnosus GG] gi|328462751|gb|EGF34641.1| peptide deformylase [Lactobacillus rhamnosus MTCC 5462] Length = 184 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 17/168 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K + +LR ++P+ ++ + L +M+ E + G+GLAA Sbjct: 4 MKDITRDGAKVLRERAKPVTFPLSDEDKQLAHDMMAYLVISQDEEQNEKYHLRPGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRADVK 105 Q+G + + + + I + + D V Sbjct: 64 PQVGQSKAMAAVLVPGDNDEILFKEVLINPRIISNSVQHAALAEGEGCLSVDKDVPGYVV 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R+ IT+ Y + +H+ + A QHE+DHLNG+LF DH+++ Sbjct: 124 RADRITIAYQNEAGEHKKVRLKNYPAIVCQHEIDHLNGVLFYDHINKE 171 >gi|148543862|ref|YP_001271232.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153262|ref|YP_001841603.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227364768|ref|ZP_03848817.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682605|ref|ZP_08162122.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|167012064|sp|A5VJ71|DEF_LACRD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|229487489|sp|B2G6P1|DEF_LACRJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|148530896|gb|ABQ82895.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|183224606|dbj|BAG25123.1| N-formylmethionyl-tRNA deformylase [Lactobacillus reuteri JCM 1112] gi|227070227|gb|EEI08601.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324978444|gb|EGC15394.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 186 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K + +P+LR+ + + ++ + L +M++ G+GLAA Sbjct: 4 MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMKYLEVSQDPELCKKYKLRAGVGLAA 63 Query: 50 VQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRAD 103 Q+GV ++ + + V INP I++ S + + + D Sbjct: 64 PQVGVSKQMAAVLVPAPDEDEKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY D N + + A QHE+DHL+G+LF DH+++ Sbjct: 124 VPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 172 >gi|71894044|ref|YP_278152.1| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 186 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55 +V PD ILR S+ +E ++ + + L + M+ + + G+G+AA+Q G+ Sbjct: 8 KIVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQ 67 Query: 56 YRLVVIDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + + L + + NP+V KI+T IP+ V RS Sbjct: 68 KNVFYVKLTQNDNSVVFDDVLFNPIVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 127 Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ Q + G LA QHELDHLNG LFID +++ Sbjct: 128 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 172 >gi|170017441|ref|YP_001728360.1| peptide deformylase [Leuconostoc citreum KM20] gi|169804298|gb|ACA82916.1| peptide deformylase [Leuconostoc citreum KM20] Length = 195 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 29/180 (16%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + DP+LR+VS + ++ + L +M+ E Sbjct: 1 MTIRFTMDKITRDGDPVLRQVSTAVPFPLSEEHAQLAQDMMTYLVVSQDEEENEKYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVI---------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQ 91 G+GLAA Q+G ++ I + NP II+ +V + Sbjct: 61 GVGLAAPQVGYSLQMTSILIPALETHEQDEQDDKPYFKGTIFNPVIISESVKRSALNVGE 120 Query: 92 EGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ ITVRY D + + A QHE+DHL+G L+ DH++ Sbjct: 121 GCLSVDEDVPGFVPRANRITVRYQDETGATKTLKLRDYPAIVFQHEIDHLHGHLYYDHIN 180 >gi|224476324|ref|YP_002633930.1| peptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420931|emb|CAL27745.1| putative polypeptide deformylase [Staphylococcus carnosus subsp. carnosus TM300] Length = 162 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV LR+ + ++K + + L+ ++ + +Y T+ L+A QIGV + + Sbjct: 1 MAVKQLVPANSSKLRKPAAEVKKFDDSLKKLLLDIEDTLYDTEASALSAPQIGVSLQAAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + INP II SD+ EG +S PD V RS I V+ D + Sbjct: 61 I----DMEAEGLLQLINPTIIRQSDETVTDLEGSISFPDVFGTVTRSQMIVVQSYDLHGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A +A + H +D L GI F + + ++ + +++ Sbjct: 117 KVELTAYDDVARMILHIVDQLKGIPFTEKM---EKQLTEEELE 156 >gi|260583921|ref|ZP_05851669.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260158547|gb|EEW93615.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 185 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 18/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLA 48 K +V+ P LR+ + I ++ D+ +L MLE ++++ GLA Sbjct: 3 TMKDIVLEGHPALRKRAGKISFPLSDDLQHLAKEMLEFLHNSQDEEIAAKYELRAGVGLA 62 Query: 49 AVQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRAD 103 A Q+G +++ + +D + + + + D Sbjct: 63 APQLGKEIQMIALLIPGYEDEPALLDEVWINPRILRESVKKTCLKEGEGCLSVNRDVPGV 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R ITV+Y + ++ A +QHE+DHLNG++F DH++ Sbjct: 123 VLRPQRITVKYFTPEGEEKVKTLTDYEAIVVQHEIDHLNGVMFYDHIN 170 >gi|144574929|gb|AAZ43441.2| putative polypeptide deformylase [Mycoplasma synoviae 53] Length = 189 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAAVQIGVL 55 +V PD ILR S+ +E ++ + + L + M+ + + G+G+AA+Q G+ Sbjct: 11 KIVSLPDKILRTKSKDVELPLSEENIELANRMIYHIEDSQKPFSTFRAGVGVAAIQYGIQ 70 Query: 56 YRLVVIDLQDHAHR-------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + + L + + NP+V KI+T IP+ V RS Sbjct: 71 KNVFYVKLTQNDNSVVFDDVLFNPIVTFKGKILTALAHGEGCLSVPDEIPNQEGLVSRSY 130 Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ Q + G LA QHELDHLNG LFID +++ Sbjct: 131 EIKVQAYSYRKQKHLEFHLKGYLAIVFQHELDHLNGKLFIDRINK 175 >gi|227524090|ref|ZP_03954139.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227088721|gb|EEI24033.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 188 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 24/176 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 +V DP+LR+ ++ ++ +++D L N++E G+GLAA Q Sbjct: 6 DIVRDGDPVLRQEAKKVKFPLSADDKKLAHNLMEYLEVSQNPELCEKYKLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYRAD 103 +GV + + + + + II + + D Sbjct: 66 VGVSKMMASVLVPNDDENEKGKPLFKDVIINPVIVSNSVQRGALTEGEGCLSVDRDVPGY 125 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR---LKRD 156 V RSA IT++Y D + I A QHE+DHL+GILF DH+++ KRD Sbjct: 126 VPRSARITLKYQDVDGNEHKIRLKNYPAIVCQHEIDHLHGILFYDHINKDNPFKRD 181 >gi|295099934|emb|CBK89023.1| peptide deformylase [Eubacterium cylindroides T2-87] Length = 184 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 +++ DP +R+ SR +E +N + L++ +LE + ++ +G+AA+Q+ Sbjct: 8 IILDTDPRIRQKSRKVELPLNQEDKELLEALLEYVRNSTDEEIAERDNLEPAVGIAAIQV 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 GV +L+ + + D + NPKII+ S + + + V R A Sbjct: 68 GVPKKLIAVVVPDEEGNVQEVALANPKIISESVQNAYLDNGEGCLSVKEVHEGHVFRHAR 127 Query: 110 ITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I VR D + I A+G A LQHE+DHL+GILF D + + Sbjct: 128 IKVRGYDLIKDDNVTISAEGYFAIALQHEIDHLSGILFYDRIDK 171 >gi|256850954|ref|ZP_05556343.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661168|ref|ZP_05862082.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282934131|ref|ZP_06339409.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297205836|ref|ZP_06923231.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|256616016|gb|EEU21204.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260548105|gb|EEX24081.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281301745|gb|EFA94011.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|297148962|gb|EFH29260.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 184 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LRRV+ + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRRVADQLTFPLSDHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + + I V + V Sbjct: 64 PQVGEGVQMASLLVPNDKGEIIFKETFVNPKIISESVRQVCLSEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T++Y + + + I G A HE+DHLNG LF D +++ Sbjct: 124 RPNKLTIKYFTVDGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRINK 170 >gi|195055504|ref|XP_001994657.1| GH17361 [Drosophila grimshawi] gi|193892420|gb|EDV91286.1| GH17361 [Drosophila grimshawi] Length = 234 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--- 61 DP+LR + + + +I ++D M+ V+ D +G+AA QIGV R++ + Sbjct: 49 QIGDPVLRDRAAEVPADCVNSKEIHAIVDQMVHVLRKFDCVGIAAPQIGVSLRIIAMEFR 108 Query: 62 -----------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + V INP++ + + EGC+S+ + A+V+R + Sbjct: 109 RSIKKDLSDATYKRRQMSELPLTVLINPQLTVTNYTKHKHPEGCMSVRGFSAEVERYEGV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + +D H + G A QHE++HL+G L+ DH+ R Sbjct: 169 KLSGLDRQGVHSELELSGWNARIAQHEMEHLDGKLYTDHMDR 210 >gi|229544091|ref|ZP_04433150.1| peptide deformylase [Bacillus coagulans 36D1] gi|229325230|gb|EEN90906.1| peptide deformylase [Bacillus coagulans 36D1] Length = 193 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 15/163 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 +V DPILR+V + + + ML+ + ++ +GL+A Q Sbjct: 14 DIVREGDPILRKVLDEVNMPPTEEDKAELRCMLQFLKNSQDPEIAGKCNLRAGVGLSANQ 73 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109 IG+ R+ + + D K VF + + V R Sbjct: 74 IGLNKRMFAVYIADEDGEKAYTVFNPKLVSHSISMIYLPQGEGCLSVDRKVDGFVPRYER 133 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V+ D + +I G A QHE+DHLNGI+F DH+++ Sbjct: 134 IKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINK 176 >gi|226948142|ref|YP_002803233.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] gi|226841538|gb|ACO84204.1| putative peptide deformylase [Clostridium botulinum A2 str. Kyoto] Length = 166 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 11/166 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGV 54 M KP+++ D L R S I+K N +I+++ + G +AA QIG Sbjct: 1 MSAKPILLLGDETLYRTSEKIQKSNLDKAKQVINDLHDTIVSFKNQYGFGRAIAAPQIGE 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + L D FINP + +D + C+S P V+R V Y Sbjct: 61 SVRIIHMHLGDKT-----HYFINPILEFIGEDTFPLWDDCMSFPGLEVYVERHKKCKVTY 115 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + + +Y +G L+ QHE DHL+GIL + LK I K Sbjct: 116 KNLDWEDCEMYLEGDLSELFQHEYDHLDGILAVQRAKDLKSFRINK 161 >gi|224510906|pdb|3G6N|A Chain A, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser gi|224510907|pdb|3G6N|B Chain B, Crystal Structure Of An Efpdf Complex With Met-Ala-Ser Length = 191 Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 22/174 (12%) Query: 1 MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGI 45 M+ ++ +P LR V++ + ++ + ++L MLE + ++ G+ Sbjct: 4 MMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGV 63 Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 GLAA Q+ + R++ + + + SV + Sbjct: 64 GLAAPQLDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDR 123 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 124 EVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 177 >gi|325195568|emb|CCA28422.1| peptide deformylase putative [Albugo laibachii Nc14] Length = 98 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 66/96 (68%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 MVFINP+I +D+ YQEGCLS+P + +V R + V+ +D + + + A+GLLA Sbjct: 1 MVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAI 60 Query: 133 CLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 C+QHE DHLNG LF+D+LS LKRD I KK+ K +L Sbjct: 61 CIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 96 >gi|262045875|ref|ZP_06018839.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|260573834|gb|EEX30390.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] Length = 184 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K +V D +LR+V++P+ ++ L D+M+ E G+GLAA Sbjct: 4 MKDIVRDGDSVLRQVAKPLTFPLSDHYKKLADDMMQYLIDSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D + I + V Sbjct: 64 PQVGEGVQMAALLVPDDQGKIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINK 170 >gi|88606874|ref|YP_505573.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] gi|88597937|gb|ABD43407.1| putative polypeptide deformylase [Anaplasma phagocytophilum HZ] Length = 197 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 72/164 (43%), Gaps = 16/164 (9%) Query: 12 PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL-------- 63 +L VS P+E ++S +++ M+++ D +GL+AVQ+G R+ VID+ Sbjct: 13 KVLHTVSSPLESVDSATREIVNEMIKIAERGDTVGLSAVQLGYPIRVFVIDMFSGLFNIT 72 Query: 64 --------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + ++ + + + ++++ ++R + ++Y Sbjct: 73 EDLKVISGHHSHNTRSLVCINPQIVSFSGETVTLFEGCLSVKSYGMVGIQRPGNVDLKYT 132 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 D +I LA C+QHE+DHLNG+L + L +K Sbjct: 133 DLAGNVCVIRTFNWLARCVQHEMDHLNGVLLANMLDNIKNKSAQ 176 >gi|317495963|ref|ZP_07954325.1| polypeptide deformylase [Gemella moribillum M424] gi|316913867|gb|EFV35351.1| polypeptide deformylase [Gemella moribillum M424] Length = 184 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 18/182 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K ++I P LR + ++ I+ + + +LE + ++ GIGLA Sbjct: 3 TTKDIIIDPHDTLRARAEEVKAPISDEDKATLRGLLEYVIASQDDEKAEKLGLKPGIGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRAD 103 A QI V R++ + + D + +N + + S+ + + + + Sbjct: 63 APQINVSKRMIAVHIPDDENPENTVSYALYNPKIISNSVAKCYLAGGEGCLSVDKEIQGY 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + I V + N + + L + C QHE+DHLNGI+F DH+++ + + Sbjct: 123 VPRYSKIKVVGYNENDEKITLTLTDLPSICFQHEIDHLNGIMFYDHINKENPFDVPAEYE 182 Query: 164 KL 165 KL Sbjct: 183 KL 184 >gi|257870629|ref|ZP_05650282.1| peptide deformylase [Enterococcus gallinarum EG2] gi|257804793|gb|EEV33615.1| peptide deformylase [Enterococcus gallinarum EG2] Length = 187 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V++ + ++ + L +M+E + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEADIQLGKDMMEFLENSQDPVKAEELNLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104 + + R+ + + F + SV + V Sbjct: 66 LDISKRITAVLVPSSDPENPEPEFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT+ Y D + Q + A +QHE+DHLNG++F DH++ Sbjct: 126 VRHARITISYYDMQGKKQKVRLKNYAAIVVQHEIDHLNGVMFYDHIN 172 >gi|330470474|ref|YP_004408217.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] gi|328813445|gb|AEB47617.1| formylmethionine deformylase [Verrucosispora maris AB-18-032] Length = 195 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 4/152 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61 P+V P P+L R ++ + + L +++ M + +GLAA Q+GV ++ + Sbjct: 31 VLPVVSAPHPVLSRAGAQVDPTAEETVRLAADLVATMRVSPGCVGLAAPQVGVGAQVFAV 90 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG--CLSIPDYRADVKRSAFITVRYM-DCN 118 D+ HA + C+S+PD DVKR++ + V + Sbjct: 91 DVTGHAKAVTVHGTFVLCNARVVEATRWKAGREGCMSVPDLTGDVKRASRLVVEGALPGS 150 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + DG A LQHE+DH G+LF+D + Sbjct: 151 GEQVRLVTDGFEARALQHEIDHCAGLLFLDRV 182 >gi|171742883|ref|ZP_02918690.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] gi|171278497|gb|EDT46158.1| hypothetical protein BIFDEN_02000 [Bifidobacterium dentium ATCC 27678] Length = 134 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + +L+ ++L+ + GL+A QIGV R ++ V Sbjct: 1 MRHLVQDLLDTVDDPGRAGLSANQIGVNLRAFSYNIDGKIGYVLNPVLEETSGE------ 54 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 EGCLS+P +R+ + VR +D + ++ G++ LQHE DHL+G +++ Sbjct: 55 QYGDEGCLSVPGLWYKTRRADYARVRGIDLDGNPVVLEGHGIMGRMLQHETDHLDGHVYL 114 Query: 148 DHLSRLKRDMITKKMSKLVQ 167 D L + +R + M Q Sbjct: 115 DRLEKEERREAMRYMRNHRQ 134 >gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7] Length = 128 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 79/127 (62%) Query: 28 IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF 87 + L D M E M+++DGIGLAA Q+G+ R++V+D H K + +NPKI S++ Sbjct: 1 MSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEK 60 Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 ++ EGCLS+PD +V R I V + + + +++ DGL A +QHE+DHL GILF+ Sbjct: 61 VLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFV 120 Query: 148 DHLSRLK 154 D+ + + Sbjct: 121 DYFNDKE 127 >gi|308070801|ref|YP_003872406.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] gi|305860080|gb|ADM71868.1| Peptide deformylase (PDF) [Paenibacillus polymyxa E681] Length = 193 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 15/165 (9%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K +V +PILR P+ ++ D + + ML+ + ++ G+GL+A Sbjct: 12 KDIVREGEPILRTKVDPVCLPLSEDDLQQMQWMLDYLKNSQNEELAGRYDLRPGVGLSAN 71 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKII--TFSDDFSVYQEGCLSIPDYRADVKRSA 108 Q+G+ R+ I +D +F + T + V R Sbjct: 72 QVGLNKRMCAIYYEDGDKTVEYALFNPKLVSHSTSMIYLEQGEGCLSVDRYVAGYVPRYE 131 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I ++ + +++ G A +QHE+DHL+GI+F D ++ Sbjct: 132 KIRIKATLPDGTQELLTFKGYAAIVVQHEMDHLDGIMFYDRINPE 176 >gi|257899443|ref|ZP_05679096.1| peptide deformylase [Enterococcus faecium Com15] gi|293573058|ref|ZP_06683999.1| peptide deformylase [Enterococcus faecium E980] gi|257837355|gb|EEV62429.1| peptide deformylase [Enterococcus faecium Com15] gi|291606877|gb|EFF36258.1| peptide deformylase [Enterococcus faecium E980] Length = 187 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAEEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 + + R++ + + + SV + + V Sbjct: 66 LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|227903714|ref|ZP_04021519.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] gi|227868601|gb|EEJ76022.1| peptide deformylase [Lactobacillus acidophilus ATCC 4796] Length = 184 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LRRVS + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D I + V Sbjct: 64 PQVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +TV Y + + + I A HE+DHLNG LF D +++ Sbjct: 124 RPDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|238855249|ref|ZP_04645568.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260664609|ref|ZP_05865461.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932458|ref|ZP_06337883.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313471931|ref|ZP_07812423.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832141|gb|EEQ24459.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239529143|gb|EEQ68144.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260561674|gb|EEX27646.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303407|gb|EFA95584.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 184 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LRRV+ + ++ L D+M+E G+GLAA Sbjct: 4 MKDIVRDGDPVLRRVADQLTFPLSEHYQKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + + I V + V Sbjct: 64 PQVGEGVQMASLLVPNDKGEIIFKETFVNPKIVSESVRQVCLSEGEGCLSVDKVIDGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T++Y + + I G A HE+DHLNG LF D + + Sbjct: 124 RPNKLTIKYFTVEGEEKTIRLTGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|259046789|ref|ZP_05737190.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259036557|gb|EEW37812.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 186 Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 18/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLA 48 K +V+ P LR+ + + ++ + L MLE ++++ +GLA Sbjct: 3 TMKDIVLEGHPALRKRAEKLTFPLSPEHQELAKEMLEFLHNSQNPEIAEKYGLRAGVGLA 62 Query: 49 AVQIGVLYRLVVI---DLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRAD 103 A Q+G +++ + ++ + + + + + Sbjct: 63 APQLGKSIQMIALLVPGFEEEEAILDEVWINPRIMRESVKKACLKDGEGCLSVNREVPGI 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R ITV+Y D N + + A +QHE+DHLNG++F DH++ Sbjct: 123 VLRPERITVKYQDVNGDEFVRTLNDYEAIVVQHEIDHLNGVMFYDHIN 170 >gi|261885374|ref|ZP_06009413.1| peptide deformylase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 153 Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 2/138 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + ++ +PD L S + K ++++ +D+M + M + +GIGLAA+Q+G R+ +I Sbjct: 1 MILDVITYPDKRLFEKSADVVKFDNELAKFLDDMYDTMIAKNGIGLAAIQVGKPIRVFII 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +L + ++ + F VYQEGCLS+P Y DVKR+ I +++ D Sbjct: 61 NLINEDEVQDKNDLLEIINPKFISKDGEIVYQEGCLSVPGYYEDVKRAKDIKIQFQDRFG 120 Query: 120 QHQIIYADGLLATCLQHE 137 + + ADGLL+ +QHE Sbjct: 121 NLKELEADGLLSVAIQHE 138 >gi|69248512|ref|ZP_00604761.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257878822|ref|ZP_05658475.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257881459|ref|ZP_05661112.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257885731|ref|ZP_05665384.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257890681|ref|ZP_05670334.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|258615107|ref|ZP_05712877.1| peptide deformylase [Enterococcus faecium DO] gi|260558387|ref|ZP_05830583.1| peptide deformylase [Enterococcus faecium C68] gi|261207094|ref|ZP_05921783.1| peptide deformylase [Enterococcus faecium TC 6] gi|289565904|ref|ZP_06446344.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|293556871|ref|ZP_06675432.1| peptide deformylase [Enterococcus faecium E1039] gi|293563619|ref|ZP_06678063.1| peptide deformylase [Enterococcus faecium E1162] gi|293567826|ref|ZP_06679167.1| peptide deformylase [Enterococcus faecium E1071] gi|294614601|ref|ZP_06694505.1| peptide deformylase [Enterococcus faecium E1636] gi|294618483|ref|ZP_06698047.1| peptide deformylase [Enterococcus faecium E1679] gi|294621220|ref|ZP_06700405.1| peptide deformylase [Enterococcus faecium U0317] gi|314938849|ref|ZP_07846120.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|314943654|ref|ZP_07850408.1| peptide deformylase [Enterococcus faecium TX0133C] gi|314949089|ref|ZP_07852449.1| peptide deformylase [Enterococcus faecium TX0082] gi|314952182|ref|ZP_07855200.1| peptide deformylase [Enterococcus faecium TX0133A] gi|314991844|ref|ZP_07857301.1| peptide deformylase [Enterococcus faecium TX0133B] gi|314996555|ref|ZP_07861592.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus faecium] gi|68194406|gb|EAN08912.1| Formylmethionine deformylase [Enterococcus faecium DO] gi|257813050|gb|EEV41808.1| peptide deformylase [Enterococcus faecium 1,230,933] gi|257817117|gb|EEV44445.1| peptide deformylase [Enterococcus faecium 1,231,502] gi|257821587|gb|EEV48717.1| peptide deformylase [Enterococcus faecium 1,231,501] gi|257827041|gb|EEV53667.1| peptide deformylase [Enterococcus faecium 1,231,410] gi|260075561|gb|EEW63867.1| peptide deformylase [Enterococcus faecium C68] gi|260078722|gb|EEW66424.1| peptide deformylase [Enterococcus faecium TC 6] gi|289162277|gb|EFD10137.1| polypeptide deformylase [Enterococcus faecium D344SRF] gi|291589411|gb|EFF21218.1| peptide deformylase [Enterococcus faecium E1071] gi|291592503|gb|EFF24108.1| peptide deformylase [Enterococcus faecium E1636] gi|291595240|gb|EFF26569.1| peptide deformylase [Enterococcus faecium E1679] gi|291599216|gb|EFF30248.1| peptide deformylase [Enterococcus faecium U0317] gi|291600955|gb|EFF31246.1| peptide deformylase [Enterococcus faecium E1039] gi|291604419|gb|EFF33909.1| peptide deformylase [Enterococcus faecium E1162] gi|313589296|gb|EFR68141.1| peptide deformylase [Enterococcus faecium TX0133a01] gi|313593549|gb|EFR72394.1| peptide deformylase [Enterococcus faecium TX0133B] gi|313595714|gb|EFR74559.1| peptide deformylase [Enterococcus faecium TX0133A] gi|313597691|gb|EFR76536.1| peptide deformylase [Enterococcus faecium TX0133C] gi|313641860|gb|EFS06440.1| peptide deformylase [Enterococcus faecium TX0133a04] gi|313644505|gb|EFS09085.1| peptide deformylase [Enterococcus faecium TX0082] Length = 187 Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V++ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 + + R++ + + + SV + + V Sbjct: 66 LDISKRIIAVHVPSPDPEADGPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|227550841|ref|ZP_03980890.1| peptide deformylase [Enterococcus faecium TX1330] gi|257887905|ref|ZP_05667558.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257893294|ref|ZP_05672947.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257896477|ref|ZP_05676130.1| peptide deformylase [Enterococcus faecium Com12] gi|293379255|ref|ZP_06625401.1| peptide deformylase [Enterococcus faecium PC4.1] gi|227179939|gb|EEI60911.1| peptide deformylase [Enterococcus faecium TX1330] gi|257823959|gb|EEV50891.1| peptide deformylase [Enterococcus faecium 1,141,733] gi|257829673|gb|EEV56280.1| peptide deformylase [Enterococcus faecium 1,231,408] gi|257833042|gb|EEV59463.1| peptide deformylase [Enterococcus faecium Com12] gi|292642051|gb|EFF60215.1| peptide deformylase [Enterococcus faecium PC4.1] Length = 187 Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + ++L MLE + ++ G+GLAA Q Sbjct: 6 DIIREGNPTLREVAEEVSLPLSEEDLSLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 + + R++ + + + SV + + V Sbjct: 66 LDISKRIIAVHVPSADPEVDEPSLSTVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R A ITV Y D N + I + +QHE+DH+NG++F DH++ Sbjct: 126 VRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHIND 173 >gi|300778831|ref|ZP_07088689.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] gi|300504341|gb|EFK35481.1| peptide deformylase [Chryseobacterium gleum ATCC 35910] Length = 211 Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 2/151 (1%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 L +S + ++ +I L+ M E + + G+G+AA Q+G+ +++ + D Sbjct: 48 HKTLLNISSEADPLDPNIAVLVKRMRESLLSTDGGVGIAAPQVGINRKIIWVQRFDKEGA 107 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 NP I+ SD ++ EG LSIPD+R RS I + Y+D Q +G Sbjct: 108 PLEYFI-NPVIVWRSDLQNLGPEGDLSIPDFRDQFYRSKVIQLEYVDLKGQKYSEIVEGF 166 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160 A QHE+DHL GIL D + K D K Sbjct: 167 TAVIFQHEIDHLFGILISDKKEKEKNDSYKK 197 >gi|322411042|gb|EFY01950.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 204 Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 I V R++ + P + + + ++ + + Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|332044807|gb|EGI81000.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4] Length = 215 Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 4/144 (2%) Query: 14 LRRVSRPIEKINSD--IMNLIDNMLEVMYSTDG--IGLAAVQIGVLYRLVVIDLQDHAHR 69 LR S ++ ++D + I + + + +G+AA Q+GVL ++ + D Sbjct: 66 LRSKSAYVKPDSTDVVLNTFIKRLYATVRDSISLGVGIAAPQVGVLKNVIWVQRFDKDEF 125 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 + I + + + RS + + Y N +H I Sbjct: 126 PFEVYLNPKIISYSQEKQTRKEGCLSIPNRTDVLNNRSKIVKIEYDKINGEHIIETITDF 185 Query: 130 LATCLQHELDHLNGILFIDHLSRL 153 A QHE+DHLNGIL++DHL + Sbjct: 186 TAIIFQHEIDHLNGILYLDHLEKE 209 >gi|227529038|ref|ZP_03959087.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227351050|gb|EEJ41341.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 190 Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 20/169 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLID------------NMLEVMYSTDGIGLAA 49 K +V DP+LR+ + + ++ + + + G+GLAA Sbjct: 7 MKDIVRDGDPVLRKRAAKVTFPLSEEDQEFAKRAMEYLEVSQDPELCKKYKLRAGVGLAA 66 Query: 50 VQIGVLYRLVVID----LQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRA 102 Q+G+ ++ + +D V INP I++ S + + + D Sbjct: 67 PQVGISKQMAAVLVPSLNEDDDQPSFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPG 126 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY D + + A QHE+DHL+G+LF DH++ Sbjct: 127 YVPRHDRITLRYQDVKGETHQLRLKNYPAIVCQHEIDHLHGVLFYDHIN 175 >gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus Peptide Deformylase Length = 184 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 17/168 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLI------------DNMLEVMYSTDGIGLA 48 K ++ P LR+ + +E + + + + + + G+GLA Sbjct: 3 TXKDIIRDGHPTLRQKAAELELPLTKEEKETLIAXREFLVNSQDEEIAKRYGLRSGVGLA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADV 104 A QI + R + + + D K+ + I Y + + V Sbjct: 63 APQINISKRXIAVLIPDDGSGKSYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R IT++ D + G A QHE+DHLNG+ F DH+ + Sbjct: 123 HRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDK 170 >gi|251781679|ref|YP_002995981.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390308|dbj|BAH80767.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 204 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 I V R++ + P + + + ++ + + Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|323126471|gb|ADX23768.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 204 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ + ++ + + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVTLPLSDEDILLGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 I V R++ + P + + + ++ + + Sbjct: 78 IDVSKRIIAVLVPNLPDQEGNPPKEAYSLQEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NG++F D ++ Sbjct: 138 VEGYVVRHARVTVEYFDKTGEKHKIKLKGYNAIVVQHEIDHINGVMFYDRINP 190 >gi|313683120|ref|YP_004060858.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] gi|313155980|gb|ADR34658.1| formylmethionine deformylase [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K L+ +PD +R +S I K + ++ L++NM + M + ++A+QI + Y +++ Sbjct: 1 MIKELITYPDERIRYISADIRKYDDELFELLENMRDTMEHHELNAISAIQIAIPYSAILL 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ IN ++I+ + + + A +KR I V Y + N + Sbjct: 61 KEGENILE-----LINARLISTEGVEEIDEVSPYFPKGFSAKIKRYGKIKVVYENRNGEL 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + A+G L+ LQ ++D L G +D L + +R + Sbjct: 116 RHLDAEGELSQRLQRQIDFLFGGTLLDKLDKKERQKAEE 154 >gi|58337138|ref|YP_193723.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58254455|gb|AAV42692.1| polypeptide deformylase Pdf [Lactobacillus acidophilus NCFM] Length = 191 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V DP+LRRVS + ++ L D+M+E G+GLAA Sbjct: 11 MKDIVRDGDPVLRRVSDDLTFPLSDHYKKLADDMMEYLINSQDPKIAEKHQLRAGVGLAA 70 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D I + V Sbjct: 71 PQVGEGVKMAALLVPDDQGNIIFKDIFVNPEIISESVRQACLSEGEGCLSVDEVINGYVP 130 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +TV Y + + + I A HE+DHLNG LF D +++ Sbjct: 131 RPDKLTVHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 177 >gi|270157521|ref|ZP_06186178.1| polypeptide deformylase [Legionella longbeachae D-4968] gi|269989546|gb|EEZ95800.1| polypeptide deformylase [Legionella longbeachae D-4968] Length = 219 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 14/165 (8%) Query: 2 VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +V P +L+ ++ + ++ +LI M + G+GLAA Q+ Sbjct: 19 MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 78 Query: 57 RLVVIDLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 R++ I + + + ++ EGC S+ V R Sbjct: 79 RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 138 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V Y D Q +G + LQHE+DHLNG L ID L+ Sbjct: 139 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP 183 >gi|254457085|ref|ZP_05070513.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085877|gb|EDZ63161.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 278 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 2/164 (1%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P + N +I+++I ++ + + + LAA QIG +Y ++VI Sbjct: 1 MVRDIITYPTPPSVEYGTDVRVFNEEIISIIQDLKDTIEANSLEALAAFQIGAMYNIIVI 60 Query: 62 DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + F+ I + E P A+V+R +++ Y D N Sbjct: 61 KKGDMSFVAGDDGFLELINPRIISCSEKISTVEKTAYFPGLSANVERHNNVSIIYEDKNF 120 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + A G A LQ ++D+ G FI+ LS+ ++ + KK+ Sbjct: 121 KQHNLKATGGEAILLQRKIDYTFGSSFINKLSKDEKKLFEKKLE 164 >gi|289164094|ref|YP_003454232.1| polypeptide deformylase [Legionella longbeachae NSW150] gi|288857267|emb|CBJ11094.1| putative polypeptide deformylase [Legionella longbeachae NSW150] Length = 222 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 14/165 (8%) Query: 2 VKKPLVIFPDP----ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +V P +L+ ++ + ++ +LI M + G+GLAA Q+ Sbjct: 22 MELKIVTIEQPEYHRVLKHQAQEVRFPLSQADKDLIAAMSSKLQKLGGVGLAAPQVNFPR 81 Query: 57 RLVVIDLQDH---------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 R++ I + + + ++ EGC S+ V R Sbjct: 82 RIIAIYIPEEAALLRDNIKSFYPMHIMINPSYTPVEGSAIQHDFEGCYSVASKSGKVPRY 141 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I V Y D Q +G + LQHE+DHLNG L ID L+ Sbjct: 142 EQINVSYYDELGQFHRQTEEGFYSRVLQHEIDHLNGFLIIDRLTP 186 >gi|229823199|ref|ZP_04449268.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] gi|229787365|gb|EEP23479.1| hypothetical protein GCWU000282_00497 [Catonella morbi ATCC 51271] Length = 185 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 22/169 (13%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ P LR+ + +E + ++ M E + ++ +GLAA Q Sbjct: 3 DIIEEGHPTLRQAAEAVEFPLTDELKATALAMHEFLVNSQNPEIAEKYGLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQ-------EGCLSIPDYRA 102 I + ++ + + D + + SV + + Sbjct: 63 INLPKQIFAVHIMSYDEEGNEAEPLLSEILFNPKIISHSVQEVALRDGEGCLSVNREVPG 122 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R I +RY D + + A +QHELDHL GI+F DH++ Sbjct: 123 LVPRPRRIRLRYQDMEGKEHELRLRDYEAIVVQHELDHLKGIMFYDHIN 171 >gi|116629817|ref|YP_814989.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282851676|ref|ZP_06261041.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311110541|ref|ZP_07711938.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|122273245|sp|Q042S1|DEF_LACGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116095399|gb|ABJ60551.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|282557644|gb|EFB63241.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311065695|gb|EFQ46035.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 184 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 + +P+LR+V++P+ + + L D M+ E G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + + I + D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|262199337|ref|YP_003270546.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] gi|262082684|gb|ACY18653.1| formylmethionine deformylase [Haliangium ochraceum DSM 14365] Length = 171 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 11/158 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55 M + ++ +P L + S+ +E + LI ++ + + G G+AA QIGV Sbjct: 1 MPARTILQLGNPDLWQSSQRVESPAAA-QALIQDLADTLAAFREKNGFGRGIAAPQIGVH 59 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ +++ INP+++ S++ V + C S+P V R+A + V + Sbjct: 60 QRLIFVNVPGGFSGP----LINPQVVWSSEEQMVLWDDCFSLPGLMVRVARAAQVRVSFQ 115 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH-LSR 152 + + + + I AD L+ LQHE+DHL+GIL + +S Sbjct: 116 NQHGEARSIEADRALSELLQHEIDHLDGILAVQRAISP 153 >gi|257866651|ref|ZP_05646304.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257872832|ref|ZP_05652485.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257876255|ref|ZP_05655908.1| peptide deformylase [Enterococcus casseliflavus EC20] gi|257800609|gb|EEV29637.1| peptide deformylase [Enterococcus casseliflavus EC30] gi|257806996|gb|EEV35818.1| peptide deformylase [Enterococcus casseliflavus EC10] gi|257810421|gb|EEV39241.1| peptide deformylase [Enterococcus casseliflavus EC20] Length = 187 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ + ++ + + L M+ E + G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104 + + R+ + + K F + SV + V Sbjct: 66 LDISKRITAVLVPSSDPEKTEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT+ Y D N + + + A +QHE+DHLNG++F DH++ Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVVQHEIDHLNGVMFYDHIN 172 >gi|229918497|ref|YP_002887143.1| peptide deformylase [Exiguobacterium sp. AT1b] gi|229469926|gb|ACQ71698.1| peptide deformylase [Exiguobacterium sp. AT1b] Length = 179 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 15/165 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K ++ D LR S + ++ + L+D M E G+G+A Sbjct: 3 TMKDVIREGDERLRARSTEVPIPPTAEDLALLDEMETFLVNSQDPEMSEKYELRGGVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIPDYRADVKR 106 A Q+GV R + LQ+ +F + + + + +V R Sbjct: 63 APQLGVNRRFFTVLLQEEEETFKLSIFNPKITSHSVEQTFLNGGEGCLSVDRVVKGNVPR 122 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 IT+ D + + + G+ A QHELDHL+GI+F D ++ Sbjct: 123 FRRITLEGFDRDGKPIKLRLRGMRAVVCQHELDHLDGIMFYDRIN 167 >gi|300361479|ref|ZP_07057656.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300354098|gb|EFJ69969.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 184 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 + +P+LR+V++P+ + + L D M+ E G+GLAA Q Sbjct: 6 DITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKII----TFSDDFSVYQEGCLSIPDYRADVKRS 107 +G ++ + + + I + + D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKILSESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|111225848|ref|YP_716642.1| putative polypeptide deformylase [Frankia alni ACN14a] gi|111153380|emb|CAJ65136.1| hypothetical protein; putative Polypeptide deformylase [Frankia alni ACN14a] Length = 550 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 13/161 (8%) Query: 1 MVKKPLVIFPDPILRRVSR----PIEKINSD--IMNLIDNMLEVMYST---DGIGLAAVQ 51 M +V DP L + +R P+E ++ + L M V G+G+AA Q Sbjct: 373 MAAAGIVQVGDPSLHQPARSFELPVEAEDARRVVAELSSAMERVSALHTFGKGMGIAAPQ 432 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IG+ ++ D +NP++I + EGCLS D R V RS + Sbjct: 433 IGINRAAAIVRSADGDILT----LLNPRVIESVPESDEQYEGCLSFFDVRGIVPRSLELH 488 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V + D + + I LA + HE+DHL+G L+ D + Sbjct: 489 VEHTDTSGRRHITVYRQGLARLVAHEIDHLHGRLYTDRMRP 529 >gi|116490852|ref|YP_810396.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290890300|ref|ZP_06553379.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] gi|116091577|gb|ABJ56731.1| peptide deformylase [Oenococcus oeni PSU-1] gi|290480086|gb|EFD88731.1| hypothetical protein AWRIB429_0769 [Oenococcus oeni AWRIB429] Length = 185 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 21/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 + +P+LR ++P+ ++ +I L MLE + G+GLA Q Sbjct: 3 DITRDGNPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 62 Query: 52 IGVLYRL----VVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD 103 + ++ + + + + IT + D Sbjct: 63 VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALETGEGCLSKDEDTPGI 122 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R+ ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 123 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 172 >gi|146319598|ref|YP_001199310.1| peptide deformylase [Streptococcus suis 05ZYH33] gi|146321796|ref|YP_001201507.1| peptide deformylase [Streptococcus suis 98HAH33] gi|253752596|ref|YP_003025737.1| polypeptide deformylase [Streptococcus suis SC84] gi|253754422|ref|YP_003027563.1| polypeptide deformylase [Streptococcus suis P1/7] gi|253756356|ref|YP_003029496.1| polypeptide deformylase [Streptococcus suis BM407] gi|158514139|sp|A4VXS1|DEF_STRSY RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158514157|sp|A4W418|DEF_STRS2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|145690404|gb|ABP90910.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145692602|gb|ABP93107.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] gi|251816885|emb|CAZ52534.1| polypeptide deformylase [Streptococcus suis SC84] gi|251818820|emb|CAZ56662.1| polypeptide deformylase [Streptococcus suis BM407] gi|251820668|emb|CAR47430.1| polypeptide deformylase [Streptococcus suis P1/7] gi|292559212|gb|ADE32213.1| Formylmethionine deformylase [Streptococcus suis GZ1] gi|319759011|gb|ADV70953.1| peptide deformylase [Streptococcus suis JS14] Length = 204 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 25/174 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDD-----------FSVYQEGCLSIPD 99 I V R++ + NP + + + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVLYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R A +TV YMD N + I G A +QHE+DHLNG++F D + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPE 191 >gi|78776817|ref|YP_393132.1| formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] gi|78497357|gb|ABB43897.1| Formylmethionine deformylase [Sulfurimonas denitrificans DSM 1251] Length = 283 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 5/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K +V +P P + + + N +I +LI+++ + + + LAA QIG + +VV+ Sbjct: 20 MIKEIVTYPTPPSVQYATDVRVFNEEIESLIEDLKDTIKANSLEALAAFQIGSYFNIVVV 79 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + I E P+ A+V R I++ Y D Q Sbjct: 80 AQDGG-----EFLELINPRIINPHGRVTTIEKTAYFPNLSAEVTRYETISLVYQDRELQQ 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + ADG + LQ ++D+ G F++ L+++++ + KK+ Sbjct: 135 HSLKADGAFSILLQRKVDYTFGSTFLNKLNKVEKKLFQKKLE 176 >gi|163790334|ref|ZP_02184766.1| peptide deformylase [Carnobacterium sp. AT7] gi|159874405|gb|EDP68477.1| peptide deformylase [Carnobacterium sp. AT7] Length = 187 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + I+S+ L ++ML E G+GLAA Q Sbjct: 6 DIIKEGHPTLRMVAKELTLPISSEEKQLGEDMLQFLKNSQDPEIAEKYSLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 + + R++ + + + + + SV + + V Sbjct: 66 LDISKRMIAVHIPGIEEGTDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R + IT+ Y D + I A +QHE+DH+NGI+F DH++ Sbjct: 126 PRHSRITLTYFDLAGEAHKIRLKNYQAIVIQHEIDHINGIMFYDHIN 172 >gi|238853448|ref|ZP_04643827.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|238834020|gb|EEQ26278.1| peptide deformylase [Lactobacillus gasseri 202-4] Length = 184 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 + +P+LR+V+RP+ + + L D M+ E G+GLAA Q Sbjct: 6 DITRDGNPVLRQVARPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + + I + D V R Sbjct: 66 VGKSIQMAALLVPNDKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVDKDIEGYVPRP 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + + I A HE+DHLNG LF D +++ Sbjct: 126 DKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 170 >gi|330833559|ref|YP_004402384.1| polypeptide deformylase [Streptococcus suis ST3] gi|329307782|gb|AEB82198.1| polypeptide deformylase [Streptococcus suis ST3] Length = 204 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 25/174 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100 I V R++ + + ++ SV + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R A +TV YMD N + I G A +QHE+DHLNGI+F D + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGIMFYDRIDPE 191 >gi|296130447|ref|YP_003637697.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] gi|296022262|gb|ADG75498.1| Peptide deformylase [Cellulomonas flavigena DSM 20109] Length = 230 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 12/160 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 P+V P+LR ++RP + ++++ L+ + M + G+GLAA QIG+ L Sbjct: 26 AVAPIVQAGHPVLRAMARPYDGQVDDAELTELLALLHRTMRAAPGVGLAAPQIGLPLALA 85 Query: 60 VIDLQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109 V++ V +NP D+ + EGCLS+ Y+A V R Sbjct: 86 VVEDPGTGDGEAARVRERPVLPYRVLVNPTYAPAGDELVAFYEGCLSVEGYQAVVPRQRA 145 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 + + +D G A +QHE DHL+G L++D Sbjct: 146 VHLTGLDETGATLDEVVTGWPARIVQHETDHLHGTLYLDR 185 >gi|323466783|gb|ADX70470.1| Peptide deformylase [Lactobacillus helveticus H10] Length = 184 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 17/169 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K +V D +LR+V++P+ ++ L ++M+E G+GLAA Sbjct: 4 MKDIVRDGDLVLRQVAKPLTFPLSDHYKQLAEDMMEYLVNSQDPKIAEKHQLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+G ++ + + D I + V Sbjct: 64 PQVGEGVQMAALLVPDDKGEIIFKEVYVNPEIVSESVRQACLSEGEGCLSVDKVINGYVP 123 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R +T+ Y + + + I A HE+DHLNG LF D +++ + Sbjct: 124 RPDKLTIHYYTVDGEEKTIRLKDYPAIVSSHEIDHLNGHLFYDRINKKE 172 >gi|295425141|ref|ZP_06817846.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065200|gb|EFG56103.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 200 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 17/167 (10%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K + +P+LR+V++P+ ++ L +M+E G+GLAA Sbjct: 20 MKDITRDGNPVLRKVAQPLTFPLSDHYKQLAKDMMEYLINSQDPKIAEKHQLRAGVGLAA 79 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVK 105 Q+ ++ + + D I V + + V Sbjct: 80 PQVDESVQMASLLVPDDKGNILFKETFVNPEIISESVRKVCLSEGEGCLSVDKEIDGYVP 139 Query: 106 RSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 R +T+ Y + + + I A HE+DHLNG LF D +++ Sbjct: 140 RPDKLTIHYFTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINK 186 >gi|239636306|ref|ZP_04677308.1| polypeptide deformylase [Staphylococcus warneri L37603] gi|239597661|gb|EEQ80156.1| polypeptide deformylase [Staphylococcus warneri L37603] Length = 162 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PI + + ++ + + + ++ + +Y+ +G L+A QIG+ ++ + Sbjct: 1 MSVKKLVKSEHPIFNQPANSVKHFDDQLKQTLIDVEDSLYALEGSALSANQIGINQQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D++ INPKI S++ EG +S+P+ +V+RS I V D N Sbjct: 61 VDMEMEGLL----QLINPKIKKQSEETITDLEGSVSLPNVFGEVERSKMIVVESNDVNGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + A +A + H +D LNGI F + + KR + ++M Sbjct: 117 TVELTAYDDVARMILHTIDQLNGIFFTE---KAKRILSEEEME 156 >gi|223933744|ref|ZP_03625717.1| peptide deformylase [Streptococcus suis 89/1591] gi|223897586|gb|EEF63974.1| peptide deformylase [Streptococcus suis 89/1591] Length = 204 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 25/174 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR+V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMKLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100 I V R++ + + ++ SV + Sbjct: 78 IDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSVQEAAMEGGEGCLSVDRE 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R A +TV YMD N + I G A +QHE+DHLNG++F D + Sbjct: 138 VQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLNGVMFYDRIDPE 191 >gi|331701103|ref|YP_004398062.1| peptide deformylase [Lactobacillus buchneri NRRL B-30929] gi|329128446|gb|AEB72999.1| Peptide deformylase [Lactobacillus buchneri NRRL B-30929] Length = 188 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 21/171 (12%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 K +V DP+LR+ ++ ++ ++ + L +++E + + +GLAA Sbjct: 4 MKDIVRDGDPVLRKQAQKVKFPLSKEDKQLAHDLMEYLEVSQDPEQCEKLGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------FSDDFSVYQEGCLSIPDYR 101 Q+GV + + + + II + + D Sbjct: 64 PQVGVSEMMASVLVPSEDEDEKDEPVFKDVIINPVIVSNSVQRGALTEGEGCLSVDKDIP 123 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R+A IT++Y D + + + A QHE+DHL+G LF DH+++ Sbjct: 124 GYVPRAARITLKYQDVDGKEHKVRLKNYPAIVCQHEIDHLHGTLFYDHINK 174 >gi|323340641|ref|ZP_08080893.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091764|gb|EFZ34384.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 198 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 18/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 ++ P LR + I ++ + + L +++E G+GLAA Q Sbjct: 20 DIIREGHPTLRARAEKIAFPLSDEDLKLAHDLMEFLENSQDEKIAKKYKLRAGVGLAAPQ 79 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-----QEGCLSIPDYRADVKR 106 + R+ + + D + + S+ + + + V R Sbjct: 80 VDASKRITAVLVPDEEGKPPFFKHVLVNPTILSESVQMAALSEGEGCLSVDREVPGYVPR 139 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 I +R+ D + + A +QHE+DHLNGI+F DH++ Sbjct: 140 HEKIKLRWYDLDGNEHVERLRDYTAIVVQHEIDHLNGIMFYDHIN 184 >gi|290562011|gb|ADD38403.1| Peptide deformylase, mitochondrial [Lepeophtheirus salmonis] Length = 247 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 18/161 (11%) Query: 6 LVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DPILR I E I ++ D +L V+ D +G++A QIG + + Sbjct: 41 VVQIGDPILRGKVEEIPLSEIKTPFINSIADKLLHVLKKYDAVGVSAPQIGTPIAMFAVG 100 Query: 63 LQDHAHRKN---------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107 + P V INP+I S ++EGC S+ + A V R Sbjct: 101 FTKSQIKSWSTETVAKEGMEPIDPPRVVINPRIDIIDSSSSTHREGCCSLYGFSAQVARY 160 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + ++ + + + A A +QHE+DHL+G LFID Sbjct: 161 RKVLLKGYNIHGEAFEWLATDWTARIIQHEMDHLSGKLFID 201 >gi|83941565|ref|ZP_00954027.1| peptide deformylase [Sulfitobacter sp. EE-36] gi|83847385|gb|EAP85260.1| peptide deformylase [Sulfitobacter sp. EE-36] Length = 131 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M++ M + G+GLAA QIGV ++ V+D R + NP +I S + Y+E Sbjct: 1 MIDTMDAMPGVGLAAPQIGVSLQVAVVDA--SQARDKRIRLANPVVIDASAIMNEYEEAS 58 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++P A ++R + V+Y+D GL AT +QH++DHL G +F+D+LS+ + Sbjct: 59 PNLPGISAKIRRPRGVKVQYLDEQGARVTRDFVGLEATSVQHQIDHLAGKMFVDNLSKTR 118 Query: 155 RDMITKKMSKLV 166 RDM+ +K K Sbjct: 119 RDMLLRKARKYK 130 >gi|328957239|ref|YP_004374625.1| peptide deformylase [Carnobacterium sp. 17-4] gi|328673563|gb|AEB29609.1| peptide deformylase [Carnobacterium sp. 17-4] Length = 187 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + I+ + L ++ML E G+GLAA Q Sbjct: 6 DIIREGHPTLRMVAKELTLPISEEEKQLGNDMLQFLKNSQDPEIAEKYNLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADV 104 + + RL+ + + + + + SV + + V Sbjct: 66 LDISKRLIAVHIPGIEEGIDEPIISTVMVNPKIISHSVQSACLTEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 R + IT+ Y D + A +QHE+DH+NGI+F DH+++ Sbjct: 126 PRHSRITLTYFDLEGELHKTRLKNYPAIVIQHEIDHINGIMFYDHINKE 174 >gi|118586207|ref|ZP_01543674.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] gi|118433357|gb|EAV40056.1| polypeptide deformylase [Oenococcus oeni ATCC BAA-1163] Length = 197 Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 21/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQ 51 + +P+LR ++P+ ++ +I L MLE + G+GLA Q Sbjct: 15 DITRDGNPVLRAKAQPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVGLAGPQ 74 Query: 52 IGVLYRL----VVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD 103 + ++ + + + + IT + D Sbjct: 75 VNKSLQMTALLIPSLNPEEDSKPYFRGIVYNPKITRESMKRAALEAGEGCLSKDEDTPGI 134 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R+ ITV Y D N +H I A QHE+DHL GI++ DH++ L Sbjct: 135 VLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINEL 184 >gi|300121292|emb|CBK21672.2| unnamed protein product [Blastocystis hominis] Length = 283 Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 19/181 (10%) Query: 9 FPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ--- 64 + +LR+ R I+ ++ + N + + G++A Q+ R+ VI Sbjct: 16 LGEKVLRQKCRLIKDPTSDEMQDFAMNAMFTCIRNNAFGVSAPQLYRPIRMFVIRDYSTV 75 Query: 65 --------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 + M + NP+I + S E CLS P A V R I + Y+D Sbjct: 76 PDPSQLSAEQHMSLPLMPYFNPRIESRSRKLMGEFESCLSDPWNVAFVARPHTIGISYID 135 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID-------HLSRLKRDMITKKMSKLVQLR 169 ++Q G A QHE DHL G D ++S+ + K+ L Sbjct: 136 GFGKYQEKEISGWEAQVFQHEYDHLEGKTMADMCTQKGLYMSKERYKRCEAYWKKVENLP 195 Query: 170 D 170 D Sbjct: 196 D 196 >gi|225867820|ref|YP_002743768.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|259645185|sp|C0MFA6|DEF_STRS7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225701096|emb|CAW97934.1| polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 204 Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 25/175 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 I V R++ + NP + + Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ K Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRINAKK 192 >gi|294155360|ref|YP_003559744.1| peptide deformylase [Mycoplasma crocodyli MP145] gi|291600027|gb|ADE19523.1| peptide deformylase [Mycoplasma crocodyli MP145] Length = 183 Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 18/170 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51 M + LV P +LR S+ + + + + L + M+ E G+G+AAVQ Sbjct: 1 MYEVKLVKLPKKVLREKSKDVPIPLLPEDVELAEKMIYHIDDSQKEGSKFRAGVGVAAVQ 60 Query: 52 IGVLYRLVVIDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+L + + ++D NP + + +T D S P Sbjct: 61 YGILKNVFYVHVRDFDKDIEIFRDVLFNPKIISKSETLTALSDGEGCLSVSESWPGQSGL 120 Query: 104 VKRSAFITVRYM-DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V RSA I V + G +A QHELDHL G LFID + + Sbjct: 121 VHRSARIVVEAYSYMQKKVVEFDVFGYVAIVFQHELDHLEGKLFIDRIDK 170 >gi|259500700|ref|ZP_05743602.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|312871379|ref|ZP_07731474.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] gi|259168084|gb|EEW52579.1| peptide deformylase [Lactobacillus iners DSM 13335] gi|311093032|gb|EFQ51381.1| peptide deformylase [Lactobacillus iners LEAF 3008A-a] Length = 181 Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 3 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 62 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + D I + D + V R+ Sbjct: 63 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 122 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 123 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 167 >gi|57238913|ref|YP_180049.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58578845|ref|YP_197057.1| peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] gi|58616903|ref|YP_196102.1| peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|57160992|emb|CAH57898.1| putative peptide deformylase 2 [Ehrlichia ruminantium str. Welgevonden] gi|58416515|emb|CAI27628.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Gardel] gi|58417471|emb|CAI26675.1| Peptide deformylase 1 [Ehrlichia ruminantium str. Welgevonden] Length = 194 Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 16/157 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ D++ L D+M++VM ++ +GL+AVQ+G R+ VI++ Sbjct: 15 LHAISHPIEKIDQDVIALADDMMKVMENSKTVGLSAVQLGSHKRMFVINMFSGLFDMTQD 74 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 H KN + + ++ +++ + ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEILSFSAETVDLFEGCSSAKSYGLINITRPRHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 II G L+ C+QHE+DHLNGIL + + +K Sbjct: 135 FGNKCIIRVYGWLSRCIQHEMDHLNGILLANVVDNIK 171 >gi|325567244|ref|ZP_08143911.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] gi|325158677|gb|EGC70823.1| peptide deformylase [Enterococcus casseliflavus ATCC 12755] Length = 187 Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 20/167 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ + ++ + + L M+ E + G+GLAA Q Sbjct: 6 DIIREGNPTLREVAKEVPFPLSEEDIALGKEMMTFLENSQDPVKAEELELRGGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-------RADV 104 + + R+ + + K F + SV + V Sbjct: 66 LDISKRITAVLVPSSDPEKAEPDFKDVLYNPKILSHSVQEACLGEGEGCLSVDREVPGYV 125 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 R A IT+ Y D N + + + A +QHE+DHLNG++F +H++ Sbjct: 126 VRHARITISYYDINGKKKKVRLKNYPAIVIQHEIDHLNGVMFYNHIN 172 >gi|116492920|ref|YP_804655.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|122265616|sp|Q03F09|DEF_PEDPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|116103070|gb|ABJ68213.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] Length = 184 Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 19/171 (11%) Query: 2 VKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIG 46 + K + +P+LR+ + + ++ + + D M+E + G+G Sbjct: 1 MIKMNDITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPAIAEKYHLRAGVG 60 Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRA 102 LAA QIG+ ++ + + + + + +I + D Sbjct: 61 LAAPQIGLSIQMASVLVPGPDNTIDLEETLVNPVIVSQSVQIAALEEGEGCLSVDKDVPG 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R ITVRY + + + I A QHE+DHL G LF DH+++ Sbjct: 121 YVPRHDRITVRYQTLDGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINKE 171 >gi|309807903|ref|ZP_07701833.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] gi|308168852|gb|EFO70940.1| peptide deformylase [Lactobacillus iners LactinV 01V1-a] Length = 184 Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + D I + D + V R+ Sbjct: 66 VGESVQVAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|225871270|ref|YP_002747217.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] gi|254767601|sp|C0M9E1|DEF_STRE4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|225700674|emb|CAW95260.1| polypeptide deformylase [Streptococcus equi subsp. equi 4047] Length = 204 Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 I V R++ + NP + + Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|34580961|ref|ZP_00142441.1| polypeptide deformylase [Rickettsia sibirica 246] gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia sibirica 246] Length = 224 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 11 DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 D +R ++ + + D+ ++ + + GLAA QIG+ +++ Sbjct: 47 DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEDNCAGLAAPQIGISKCIIIFAVHEDAE 106 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++INP D EGC S+ + V R I D N Sbjct: 107 LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 166 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|169404549|pdb|2OS3|A Chain A, Structures Of Actinonin Bound Peptide Deformylases From E. Faecalis And S. Pyogenes Length = 205 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + +M + + M E + G+GLAA Q Sbjct: 17 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 76 Query: 52 IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99 I V R++ + V NPKI++ S S + Sbjct: 77 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 136 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 137 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 188 >gi|15892003|ref|NP_359717.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157827954|ref|YP_001494196.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932642|ref|YP_001649431.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238650519|ref|YP_002916371.1| peptide deformylase [Rickettsia peacockii str. Rustic] gi|15619118|gb|AAL02618.1| polypeptide deformylase [Rickettsia conorii str. Malish 7] gi|157800435|gb|ABV75688.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907729|gb|ABY72025.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|238624617|gb|ACR47323.1| peptide deformylase [Rickettsia peacockii str. Rustic] Length = 224 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 11 DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 D +R ++ + + D+ ++ + + GLAA QIG+ +++ Sbjct: 47 DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 106 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++INP D EGC S+ + V R I D N Sbjct: 107 LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 166 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|229586292|ref|YP_002844793.1| Polypeptide deformylase [Rickettsia africae ESF-5] gi|228021342|gb|ACP53050.1| Polypeptide deformylase [Rickettsia africae ESF-5] Length = 224 Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%) Query: 11 DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 D +R ++ + + D+ N+ + + GLAA QIG+ +++ Sbjct: 47 DKTIRIKAQTLNFPLSSEDLRNISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 106 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++INP D E C S+ + V R I D N Sbjct: 107 LKKWHPDLKDTIPKTIWINPSYKPIGIDKHEDYEECFSVENATGPVARFKKIHYHAYDIN 166 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 167 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 214 >gi|329921309|ref|ZP_08277747.1| peptide deformylase [Lactobacillus iners SPIN 1401G] gi|328934601|gb|EGG31105.1| peptide deformylase [Lactobacillus iners SPIN 1401G] Length = 184 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKQLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + D I + D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|195978856|ref|YP_002124100.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689838|sp|B4U576|DEF_STREM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|195975561|gb|ACG63087.1| peptide deformylase Pdf [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 I V R++ + NP + + Sbjct: 78 IDVSKRIIAVLVPNPEDSEGNPPKEAYSMEEVLYNPKIVSHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVEYYDKHNEKHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|309803948|ref|ZP_07698031.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] gi|308163950|gb|EFO66214.1| peptide deformylase [Lactobacillus iners LactinV 11V1-d] Length = 184 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + D I + D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQRQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|319745793|gb|EFV98087.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51 ++ +P LR+V+ + S+ ++ M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + A P + + + ++ + + + Sbjct: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189 >gi|19746868|ref|NP_608004.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|25452912|sp|Q8NZB7|DEF_STRP8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|19749109|gb|AAL98503.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99 I V R++ + V NPKI++ S S + Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D Q I G A +QHE+DH+NGILF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGILFYDRIN 189 >gi|325688984|gb|EGD30992.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 210 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + D P + + + ++ + + Sbjct: 82 PQLNISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|324992462|gb|EGC24383.1| peptide deformylase [Streptococcus sanguinis SK405] gi|327472415|gb|EGF17846.1| peptide deformylase [Streptococcus sanguinis SK408] gi|327488768|gb|EGF20567.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 210 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + + P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|309807220|ref|ZP_07701192.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] gi|308166358|gb|EFO68565.1| peptide deformylase [Lactobacillus iners LactinV 03V1-b] Length = 184 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52 +V + +LR+V + + +N L ++M+ E G+GLAA Q+ Sbjct: 7 IVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQV 66 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRSA 108 G ++ + + D I + D + V R+ Sbjct: 67 GESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRAY 126 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 127 KLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|302191390|ref|ZP_07267644.1| peptide deformylase [Lactobacillus iners AB-1] gi|309809281|ref|ZP_07703150.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|312872368|ref|ZP_07732438.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|312873953|ref|ZP_07733989.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|312875523|ref|ZP_07735526.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|315653465|ref|ZP_07906386.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325911485|ref|ZP_08173896.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325912854|ref|ZP_08175232.1| peptide deformylase [Lactobacillus iners UPII 60-B] gi|308170394|gb|EFO72418.1| peptide deformylase [Lactobacillus iners SPIN 2503V10-D] gi|311089034|gb|EFQ47475.1| peptide deformylase [Lactobacillus iners LEAF 2053A-b] gi|311090502|gb|EFQ48910.1| peptide deformylase [Lactobacillus iners LEAF 2052A-d] gi|311092191|gb|EFQ50565.1| peptide deformylase [Lactobacillus iners LEAF 2062A-h1] gi|315489156|gb|EFU78797.1| peptide deformylase [Lactobacillus iners ATCC 55195] gi|325476685|gb|EGC79840.1| peptide deformylase [Lactobacillus iners UPII 143-D] gi|325477847|gb|EGC80981.1| peptide deformylase [Lactobacillus iners UPII 60-B] Length = 184 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----QEGCLSIPDYRADVKRS 107 +G ++ + + D I + D + V R+ Sbjct: 66 VGESVQMAALLVPDDQGNIIFKETFVNPKIISESVRRTCLSEGEGCLSVDKDIQGYVPRA 125 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + ++Y + + + I G A HE+DHLNG LF D + + Sbjct: 126 YKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRIDK 170 >gi|22538033|ref|NP_688884.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|25011922|ref|NP_736317.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|76788216|ref|YP_330458.1| peptide deformylase [Streptococcus agalactiae A909] gi|76797863|ref|ZP_00780126.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77405647|ref|ZP_00782735.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77408421|ref|ZP_00785160.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77411534|ref|ZP_00787877.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77414207|ref|ZP_00790370.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|39930892|sp|Q8DXF6|DEF_STRA5 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|39930894|sp|Q8E378|DEF_STRA3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123601213|sp|Q3JZ45|DEF_STRA1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase [Streptococcus agalactiae 2603V/R] gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae NEM316] gi|76563273|gb|ABA45857.1| peptide deformylase [Streptococcus agalactiae A909] gi|76586766|gb|EAO63261.1| peptide deformylase [Streptococcus agalactiae 18RS21] gi|77159733|gb|EAO70881.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|77162388|gb|EAO73356.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|77172944|gb|EAO76074.1| polypeptide deformylase [Streptococcus agalactiae COH1] gi|77175720|gb|EAO78501.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDN-------------MLEVMYSTDGIGLAAVQ 51 ++ +P LR+V+ + S+ ++ M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + A P + + + ++ + + + Sbjct: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +T+ Y D + + G + +QHE+DH++GI+F D ++ Sbjct: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189 >gi|56808716|ref|ZP_00366436.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209560096|ref|YP_002286568.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|238058214|sp|B5XIL1|DEF_STRPZ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|209541297|gb|ACI61873.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQNPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99 I V R++ + V NPKI++ S S + Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|270291431|ref|ZP_06197653.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304385144|ref|ZP_07367490.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|270280277|gb|EFA26113.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|304329338|gb|EFL96558.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 184 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 19/170 (11%) Query: 2 VKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIG 46 + K + +P+LR+ + + ++ + + D M+E + G+G Sbjct: 1 MIKMNDITRDGNPVLRKRAEKLTFPLDPKYLKVADEMMEYLKNSQDPKIAQKYHLRAGVG 60 Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS----VYQEGCLSIPDYRA 102 LAA QIG+ ++ + + + +I + + Sbjct: 61 LAAPQIGLSIQMASVLVPGPDDEIIFEETLVNPVIVSQSVQVAALDEGEGCLSVDKEVPG 120 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R IT+RY + + + I A QHE+DHL G LF DH+++ Sbjct: 121 YVPRYDRITIRYQNVEGEEKTIKLRDYPAIVCQHEIDHLKGTLFYDHINK 170 >gi|15829160|ref|NP_326520.1| polypeptide deformylase 2 (PDF 2) (formylmethionine deformylase 2) [Mycoplasma pulmonis UAB CTIP] gi|23396551|sp|Q98PN3|DEF_MYCPU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (FORMYLMETHIONINE DEFORMYLASE 2) [Mycoplasma pulmonis] Length = 198 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 72/185 (38%), Gaps = 31/185 (16%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV--------MYSTDGIGLAAVQ 51 M K +V P +LR+ S+ + +N + L + M+ G+G+AAVQ Sbjct: 4 MFKVEIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGPNTKFRPGVGVAAVQ 63 Query: 52 IGVLYRLVVIDLQDHAH---------------------RKNPMVFINPKIITFSDDFSVY 90 G+L + + + + + NP V + Sbjct: 64 YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD-GLLATCLQHELDHLNGILFIDH 149 S P+ V+R I V+ + ++I+ G +A QHELDHLNG+LFID Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183 Query: 150 LSRLK 154 + + Sbjct: 184 IDPKR 188 >gi|327460694|gb|EGF07029.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 210 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + + P + + + ++ + + Sbjct: 82 SQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|73666812|ref|YP_302828.1| formylmethionine deformylase [Ehrlichia canis str. Jake] gi|72393953|gb|AAZ68230.1| Formylmethionine deformylase [Ehrlichia canis str. Jake] Length = 194 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 16/157 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ I++ Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEDSKTVGLSAVQLGNHSRMFTINMFSGLFDVTQD 74 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 H KN + + ++ +++ + ++ R + RY D Sbjct: 75 IKVLSGHHSLHGKNMVCINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDFRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ G L+ C+QHELDHLNGIL + + +K Sbjct: 135 LGNKCVVRVYGWLSRCIQHELDHLNGILLANVVDNIK 171 >gi|325686575|gb|EGD28601.1| peptide deformylase [Streptococcus sanguinis SK72] Length = 210 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + R++ + D P + + + ++ + + Sbjct: 82 PQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|312863990|ref|ZP_07724226.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322517594|ref|ZP_08070462.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|311100403|gb|EFQ58610.1| peptide deformylase [Streptococcus vestibularis F0396] gi|322123759|gb|EFX95337.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 204 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M++ + ++ G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + A P + + I ++ + + D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + Q + G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTVEYYNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190 >gi|125718849|ref|YP_001035982.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125498766|gb|ABN45432.1| Peptide deformylase, putative [Streptococcus sanguinis SK36] gi|324996009|gb|EGC27920.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 210 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + D P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|328770364|gb|EGF80406.1| hypothetical protein BATDEDRAFT_88570 [Batrachochytrium dendrobatidis JAM81] Length = 198 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 17/165 (10%) Query: 5 PLVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59 ++ P LR + + + + ++ +M V S +GLAA QI +L+ Sbjct: 17 EVLKAGHPFLRTKAEAVSLNDINTPAFLKIVKSMNAVFDSPLHSVLGLAAAQISHPVQLI 76 Query: 60 VIDLQDHAHRKNPM--------VFINPKIITFSDDFSVYQEG----CLSIPDYRADVKRS 107 + D K +NP + S + C SIP+Y V+R+ Sbjct: 77 AYQITDTQLIKEKNLPGPVARTFIVNPVMTILDKLPSAKWKAEYEFCESIPNYSGLVRRA 136 Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V + + A G+LA +QHE+DH+ GILFID + R Sbjct: 137 DHVHVTGFGLDGNSITVNAKGILARIIQHEMDHMEGILFIDKMER 181 >gi|313889599|ref|ZP_07823243.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313122026|gb|EFR45121.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 204 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 74/176 (42%), Gaps = 27/176 (15%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGL 47 M ++ +P LR+ ++ + ++ + + L + M+ E + G+GL Sbjct: 16 MA--DIIREGNPTLRQKAQEVALPLSDEDIILGEKMMQFLKHSQDPVMAEKLDLRGGVGL 73 Query: 48 AAVQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCL 95 AA Q+ + R++ + + + P + + + ++ + + Sbjct: 74 AAPQLDISKRVIAVLVPNMEDSEGNPPKEAYSLQEVMYNPKIVAHSVQDAALAEGEGCLS 133 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +TV Y + + + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 134 VDRLIEGYVVRHSRVTVDYYNKDGEKQRIKLKGYNAIVVQHEIDHINGIMFYDRIN 189 >gi|15675756|ref|NP_269930.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21911220|ref|NP_665488.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896598|ref|NP_802948.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50915023|ref|YP_060995.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71904319|ref|YP_281122.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71911482|ref|YP_283032.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94989300|ref|YP_597401.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94991246|ref|YP_599346.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94993189|ref|YP_601288.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94995159|ref|YP_603257.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|139474444|ref|YP_001129160.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306826604|ref|ZP_07459909.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|56748620|sp|Q5X9V1|DEF_STRP6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|56749812|sp|P68772|DEF_STRP3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|62901513|sp|P68771|DEF_STRP1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122986892|sp|Q1J9R7|DEF_STRPB RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123257906|sp|Q1JEV7|DEF_STRPD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123258119|sp|Q1JJW6|DEF_STRPC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123382136|sp|Q1J4M3|DEF_STRPF RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|123761380|sp|Q48R93|DEF_STRPM RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|158512785|sp|A2RGI0|DEF_STRPG RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|13622977|gb|AAK34651.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21905433|gb|AAM80291.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50904097|gb|AAT87812.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71803414|gb|AAX72767.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71854264|gb|AAZ52287.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94542808|gb|ABF32857.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94544754|gb|ABF34802.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|94546697|gb|ABF36744.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94548667|gb|ABF38713.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] gi|134272691|emb|CAM30962.1| polypeptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304431182|gb|EFM34186.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 204 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPVMAEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI---------DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPD 99 I V R++ + V NPKI++ S S + Sbjct: 78 IDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSVQDAALSDGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D Q I G A +QHE+DH+NG+LF D ++ Sbjct: 138 VEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHINGVLFYDRIN 189 >gi|47459452|ref|YP_016314.1| formylmethionine deformylase [Mycoplasma mobile 163K] gi|47458782|gb|AAT28103.1| formylmethionine deformylase [Mycoplasma mobile 163K] Length = 184 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 17/176 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST--------DGIGLAAVQIGVL 55 L+ P+ ILR+ S I ++ + + L M+ + ++ G+G+AAVQ G+L Sbjct: 7 KLIELPNKILRQKSLDINLPLSHEDIELAKKMIYHIKNSQSKNTIFRPGVGVAAVQYGIL 66 Query: 56 YRLVVIDLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 ++ + + D + NP V P+ VKRS Sbjct: 67 KQMFYVYITDEDNKVVFEDLMINPKVLAKSTSKIALRTGEGCLSVNEEHPNQEGYVKRSK 126 Query: 109 FITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 I V+ + + +G A QHELDHLNG LFIDH+ + I K + Sbjct: 127 RIVVKGYSYFKKEEVTHDLNGYPAIVFQHELDHLNGKLFIDHIDKENNWFIEKDLE 182 >gi|322374579|ref|ZP_08049093.1| peptide deformylase [Streptococcus sp. C300] gi|321280079|gb|EFX57118.1| peptide deformylase [Streptococcus sp. C300] Length = 203 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRVIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188 >gi|228476502|ref|ZP_04061192.1| peptide deformylase [Streptococcus salivarius SK126] gi|228251923|gb|EEK10969.1| peptide deformylase [Streptococcus salivarius SK126] Length = 204 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 74/173 (42%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M++ + ++ G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + A P + + I ++ + + D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGDGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + Q + G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKQRVKLRGYNSIVVQHEIDHTNGIMFYDRINK 190 >gi|55820249|ref|YP_138691.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822139|ref|YP_140580.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116627103|ref|YP_819722.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|81676625|sp|Q5M1R9|DEF_STRT1 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|81676774|sp|Q5M6B0|DEF_STRT2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122268294|sp|Q03MP6|DEF_STRTD RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|55736234|gb|AAV59876.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738124|gb|AAV61765.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] gi|116100380|gb|ABJ65526.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277572|gb|ADQ62229.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 204 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M++ + ++ G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPVIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY------ 100 + + R++ + + K SV + + Sbjct: 78 LDISKRIIAVLVPNPEDAKGNPPKEAYSLQEIMYNPKVVAHSVQEAALGNGEGCLSVDRD 137 Query: 101 -RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +T+ Y + + + I G + +QHE+DH NGI+F D +++ Sbjct: 138 VPGYVVRHARVTIEYFNKEGEKKRIKLRGYDSIVVQHEIDHTNGIMFYDRINK 190 >gi|327462775|gb|EGF09097.1| peptide deformylase [Streptococcus sanguinis SK1057] Length = 210 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + D P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|66806299|ref|XP_636872.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] gi|60465273|gb|EAL63366.1| hypothetical protein DDB_G0288157 [Dictyostelium discoideum AX4] Length = 243 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 55/204 (26%) Query: 4 KPLVIFPDPILRRVSRPI--EKINS--DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 K +V + +LR + P E++N + L++ M + M G G+AA QIGV +L Sbjct: 8 KNIVKVGNKLLREKALPWSKEELNDVRRVEKLLEKMYKEMKDCTGTGIAAPQIGVNKQLF 67 Query: 60 VIDLQDHAHRKNPMV--------------------------------------------- 74 +++L P Sbjct: 68 LLELPSQEGLNCPNFPLTAFFNPKIKLIDQDVTKPSRRTITDFKKFLHGSEKLLNLSQYK 127 Query: 75 ------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 I ++ E CLS+P+ A V+RS + ++D + +II ADG Sbjct: 128 TKFQTEESTLPTIPTENNTITMLESCLSVPNIFAHVQRSKRCIITFLDITGKERIIEADG 187 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 +LA C QHE DHL G +FID + + Sbjct: 188 ILAACFQHEYDHLLGKIFIDRIDK 211 >gi|322373777|ref|ZP_08048312.1| peptide deformylase [Streptococcus sp. C150] gi|321277149|gb|EFX54219.1| peptide deformylase [Streptococcus sp. C150] Length = 204 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 75/173 (43%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + M++ + ++ G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTLPLSDEDIILGEKMMQFLRNSQDPIIAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + A P + + I ++ + + D Sbjct: 78 LDISKRIIAVLVPNPEDAEGNPPKEAYSLQEIMYNPKVVAHSVQDAALGEGEGCLSVDRD 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + + I G + +QHE+DH NGI+F DH+++ Sbjct: 138 VPGYVVRHARVTVEYFNKEGEKKRIKFRGYNSIVVQHEIDHTNGIMFYDHINK 190 >gi|23396567|sp|Q92JI7|DEF2_RICCN RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 Length = 202 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 11 DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 D +R ++ + + D+ ++ + + GLAA QIG+ +++ Sbjct: 25 DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 84 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++INP D EGC S+ + V R I D N Sbjct: 85 LKKWHPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDIN 144 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G LA +QHE+DHLNG +F+D+++ K+ M ++ ++ + Sbjct: 145 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-KKIMTKEEYLEMRK 192 >gi|306832702|ref|ZP_07465839.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304425158|gb|EFM28287.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 204 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 26/182 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + ML E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + +D K+ SV + Sbjct: 78 LDISKRIIAVLVPNPEDKDGNPPKDAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 V R + +TV Y D N + I G + +QHE+DH NGI+F D + K Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRID-EKNPFAI 196 Query: 160 KK 161 KK Sbjct: 197 KK 198 >gi|307702174|ref|ZP_07639134.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307624187|gb|EFO03164.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 203 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188 >gi|229821583|ref|YP_002883109.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] gi|229567496|gb|ACQ81347.1| Peptide deformylase [Beutenbergia cavernae DSM 12333] Length = 217 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 12/158 (7%) Query: 3 KKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 P+V P+LR + E L++ M M + G+GLAA QIG+ + V Sbjct: 18 VLPIVSAGAPVLRAPAARYGGELGAERFHRLLEAMRVTMRTAPGVGLAAPQIGLPLAIAV 77 Query: 61 IDLQD----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 I+ V +NP + + EGCLS+P Y A R + Sbjct: 78 IEDPGVDDDATAAARERVPVAFRVLVNPTYTPAGPERVSFYEGCLSVPGYVAVRARWRRV 137 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + D G A +QHE+DHL G L++D Sbjct: 138 RLLAADEAGNAVAEELAGWPARIVQHEVDHLAGELYLD 175 >gi|322388152|ref|ZP_08061756.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140824|gb|EFX36325.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 203 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E + G+GLAA Sbjct: 16 MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 Q+ + R++ + ++ + SV + Sbjct: 76 PQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDR 135 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNG++F D ++ Sbjct: 136 TVPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGVMFYDRIN 188 >gi|309798501|ref|ZP_07692783.1| peptide deformylase [Streptococcus infantis SK1302] gi|308117873|gb|EFO55267.1| peptide deformylase [Streptococcus infantis SK1302] Length = 203 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E + G+GLAA Sbjct: 16 MKDIIREGNPTLRAVAEEVSFPLSDQDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 Q+ + R++ + ++ + SV + Sbjct: 76 PQLDISKRIIAVLVPNITEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDR 135 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 136 AVPGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188 >gi|193216926|ref|YP_002000168.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] gi|193002249|gb|ACF07464.1| formylmethionine deformylase [Mycoplasma arthritidis 158L3-1] Length = 185 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 17/166 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQIGVLY 56 L+ P+ LR+ S I + + +LI M+ + +G+AAVQ G+L Sbjct: 9 LIELPNKTLRQKSNDITLPLTKEDEDLIQKMIFHVDDSQEKETKFRPAVGVAAVQYGILK 68 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDF----SVYQEGCLSIPDYRAD----VKRSA 108 + I L+D + + + + + + + + Sbjct: 69 NVFYILLKDENNEVLFKDALINPQMVAHSEHKLALDEGEGCLSVNQNDPGQAGYVPRYAR 128 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 + Y + + G LA QHE DHL G LFIDHL++ + Sbjct: 129 VVMKAYSYYEKKEKTYDVSGYLAIIFQHEYDHLFGKLFIDHLNKKE 174 >gi|46446175|ref|YP_007540.1| putative peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] gi|46399816|emb|CAF23265.1| putative Peptide deformylase [Candidatus Protochlamydia amoebophila UWE25] Length = 156 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH-----AHRKNPMVFINP 78 I+ + LI +M+E M++ GIGLAA Q+ L V + VFINP Sbjct: 4 IDDALKQLIYDMVETMHTMKGIGLAAPQVHHSISLFVTCVPVKNKNGLWESGKDRVFINP 63 Query: 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138 +I++ S++ + EGCLSIP+ +V R A ITV+ +D GL AT HE Sbjct: 64 QILSMSEETQTFSEGCLSIPNLHMNVTRPAKITVQAVDLEGNLFEEIFTGLQATNFMHEY 123 Query: 139 DHLNGILFIDHLSRLKRDMITK 160 DHLNGIL ID+ S +R + + Sbjct: 124 DHLNGILIIDYYSLEERKSLEQ 145 >gi|313157220|gb|EFR56650.1| peptide deformylase [Alistipes sp. HGB5] Length = 229 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 5/144 (3%) Query: 14 LRRVSRPI--EKINSDIMNLIDN-MLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAH 68 LRR + P+ E++ S+ L+ ML + +G+G+AA Q+GV RL+ + D Sbjct: 84 LRRKAAPLGAEELRSEYFRLLKQGMLLTVRDPADEGVGIAAPQVGVSRRLIAVQRFDKPG 143 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG 128 + + + + ++ + + + +G Sbjct: 144 EPFECYVNPEIVGRSAARTAGREGCLSVPETSGTVLRADRIVLRYLDETTMRPVTDTVEG 203 Query: 129 LLATCLQHELDHLNGILFIDHLSR 152 A QHE+DHL+G+LFID + R Sbjct: 204 FTAVIFQHEIDHLDGVLFIDRMQR 227 >gi|156368959|ref|XP_001627958.1| predicted protein [Nematostella vectensis] gi|156214922|gb|EDO35895.1| predicted protein [Nematostella vectensis] Length = 192 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 24/185 (12%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + DP+LR + ++ + D ++D +++VM S DG G+AA QIGV +++ + Sbjct: 10 KIRQVGDPVLREPAEAVDVTFVHSPDFKAMVDRLVKVMRSHDGAGIAAPQIGVGLQVIAM 69 Query: 62 DLQDHAHRKNPMV-------------------FINPKIITFSDDFSVYQEGCLSIPDYRA 102 + +K FINPK+ + ++E CLS+ + A Sbjct: 70 EYTGKHMKKLKDNGFSDKDLKRMGIAIVPLKVFINPKLRVINPKMLAFRESCLSVEGHSA 129 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 V R + + V +D NA A G A LQHE+DHL G L++D S L + + Sbjct: 130 VVPRMSEVEVTALDQNATPITWRAAGWPARILQHEVDHLKGNLYVD--SMLYKTFMNNNW 187 Query: 163 SKLVQ 167 K + Sbjct: 188 QKYAK 192 >gi|284033559|ref|YP_003383490.1| formylmethionine deformylase [Kribbella flavida DSM 17836] gi|283812852|gb|ADB34691.1| formylmethionine deformylase [Kribbella flavida DSM 17836] Length = 162 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 4/148 (2%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVV--IDL 63 V P P+L ++ ++ ++ L +++ M + +GLAA Q+GV ++ + Sbjct: 2 VRAPHPVLATEGAEVDPLDPVMLALAADLVATMRISPGCVGLAAPQVGVAAQMFALDVTG 61 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + + ++ + +EGC+S+PD DVKR+ +TV + + Sbjct: 62 HPKTRTCHGVFVLCNAVVVEATRKEKAREGCMSVPDLTGDVKRATRLTVTGVLPGTTDVV 121 Query: 124 IYADGLL-ATCLQHELDHLNGILFIDHL 150 A +QHE+DH NG LF+D + Sbjct: 122 TLTTDAFEARAVQHEIDHCNGSLFLDRV 149 >gi|324989743|gb|EGC21686.1| peptide deformylase [Streptococcus sanguinis SK353] gi|327468374|gb|EGF13859.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 210 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + + P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPEDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|300173110|ref|YP_003772276.1| peptide deformylase [Leuconostoc gasicomitatum LMG 18811] gi|299887489|emb|CBL91457.1| Peptide deformylase [Leuconostoc gasicomitatum LMG 18811] Length = 192 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 26/177 (14%) Query: 1 MVKK----PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTD 43 M + + +LR+ + + ++ + L +M+ E Sbjct: 1 MTIRFTMDKITRDGASVLRKTAASVPFPLSEEHAQLAKDMMTYLVISQDESQNEQYGLRP 60 Query: 44 GIGLAAVQIGVLYRLVVI------DLQDHAHRKNPMVFINPKIIT---FSDDFSVYQEGC 94 G+GLAA Q+ R+ I + NP II+ V + Sbjct: 61 GVGLAAPQVNYSLRMASILVPSLDPHESDETPYFKGTIFNPTIISESIKRGALDVGEGCL 120 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R+ ITVRY D +II A QHE+DHL+G L+ DH+ Sbjct: 121 SVDKDVPGFVPRADRITVRYQDETGATKIIKLRDYPAIVFQHEIDHLHGHLYYDHID 177 >gi|301103913|ref|XP_002901042.1| peptide deformylase, putative [Phytophthora infestans T30-4] gi|262101380|gb|EEY59432.1| peptide deformylase, putative [Phytophthora infestans T30-4] Length = 210 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M LV + LRRVS+ + + + L++++ + + G+G+AA Q+ R+ Sbjct: 1 MT---LVFLGNSALRRVSKSVADVRAPAVRRLLEDLDKEVRLEAGVGIAAPQLAHNLRMF 57 Query: 60 VID-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ +D + +NPKI+ S EGCLS+P Y+ ++R+ I V+Y Sbjct: 58 LMIKDMPENEDDLSKLEYQEVLNPKIVAMSKSSKRDFEGCLSVPGYQGIIERAEEIRVQY 117 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D + A QHELDHLNG++++D L Sbjct: 118 QDAEGRKIQETLTDFPARIFQHELDHLNGVMYLDRLE 154 >gi|162448037|ref|YP_001621169.1| peptide deformylase [Acholeplasma laidlawii PG-8A] gi|161986144|gb|ABX81793.1| peptide deformylase [Acholeplasma laidlawii PG-8A] Length = 192 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 21/168 (12%) Query: 6 LVIFPDPILRRVSRPI----EKINSDI-MNLI--------DNMLEVMYSTDGIGLAAVQI 52 ++ P L S+P+ + + D+ +LI D M++ +GLAA QI Sbjct: 4 IIREGHPSLTTPSKPVLLPLSQKDIDLGKSLIEYVKNSQDDAMVKKHRLRPSVGLAAPQI 63 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAF 109 L R+ + ++D V INP+I+ + + + + R Sbjct: 64 NELKRMFAMHVEDMDGTLYSYVMINPEIVGHTHEETYLPGGEGCLSVDRATSGLTPRYYG 123 Query: 110 ITVRYMDCNA-----QHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I VR + + + +G A QHE DHL+GI+F L Sbjct: 124 IMVRGYHLDFESLTAKPIELTLEGYPAIVFQHEYDHLDGIMFTSKLYP 171 >gi|296877265|ref|ZP_06901305.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|312867979|ref|ZP_07728183.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|296431785|gb|EFH17592.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|311096383|gb|EFQ54623.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 204 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + D K SV + + Sbjct: 78 LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINP 190 >gi|323350520|ref|ZP_08086182.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322123202|gb|EFX94887.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 210 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPIMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + + P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPEDEEGSPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|172058021|ref|YP_001814481.1| peptide deformylase [Exiguobacterium sibiricum 255-15] gi|171990542|gb|ACB61464.1| peptide deformylase [Exiguobacterium sibiricum 255-15] Length = 179 Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 15/165 (9%) Query: 5 PLVIFPDPILRRVSRPIE----KINSDIMNLI---------DNMLEVMYSTDGIGLAAVQ 51 +V P L S + + + + M L+ D + E GIGLAA Q Sbjct: 6 EIVREDVPSLHERSVDVTFPLSEEDKETMRLMMEYLANSQDDELAEKYDLRSGIGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAF 109 IGV R+ I LQD ++ + + + + V R Sbjct: 66 IGVNKRMFAIRLQDGDDILEFGIYNPKIVSHSVEQTYLAGGEGCLSVDREVEGHVPRYMR 125 Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 IT+ +D N + GL A QHE DHL+GI+F D + + Sbjct: 126 ITLSGIDHNGNPVKLRLKGLKAVVCQHEYDHLDGIMFYDRIDPKE 170 >gi|322390858|ref|ZP_08064367.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321142443|gb|EFX37912.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 204 Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEDVTFPLSDQEIILGEKMMQFLHHSQDPIMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + D K SV + + Sbjct: 78 LDISKRIIAVLVPNPEDADGNPPKEAYSLQEVMYNPKVVAHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y + + + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VPGYVVRHARVTVEYFTKDGEKKRIKLKGYNSIVVQHEIDHTNGIMFYDRINP 190 >gi|288904432|ref|YP_003429653.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|306830465|ref|ZP_07463635.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977428|ref|YP_004287144.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731157|emb|CBI12705.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|304427490|gb|EFM30592.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177356|emb|CBZ47400.1| N-formylmethionyl-tRNA deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 204 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V+ + ++ + + L + ML E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDEEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + +D K SV + Sbjct: 78 LDISKRIIAVLVPNPEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +TV Y D N + I G + +QHE+DH NGI+F D + Sbjct: 138 VEGYVVRHSRVTVDYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRID 189 >gi|293365121|ref|ZP_06611838.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|291316571|gb|EFE57007.1| peptide deformylase [Streptococcus oralis ATCC 35037] Length = 208 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 193 >gi|126641011|ref|YP_001083995.1| peptide deformylase 2 [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 5/122 (4%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSV 89 M M +G+G+AA Q+ + R++++ A N +V +NP+I+ FS + + Sbjct: 1 MHATMLERNGVGIAAPQVYISKRIIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCL 60 Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +EGCLS+PD R V+R+ + V+Y+ + G A +QHE+DHLNGILF++ Sbjct: 61 GEEGCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLNGILFVER 120 Query: 150 LS 151 +S Sbjct: 121 IS 122 >gi|157825792|ref|YP_001493512.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799750|gb|ABV75004.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 129 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 1/118 (0%) Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 +G+L R+ +++L ++ P+V INP+I FS+ + E LS P A + RS I Sbjct: 1 MVGILKRIAIVELHENNKSS-PIVLINPEITYFSEAKQTFIECSLSFPGIEASITRSKVI 59 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 V+Y+D + Q + A+G LAT +QH++D+LNG F+D+LS+LKRDM+ KKM K ++L Sbjct: 60 KVKYLDYDGNKQELDAEGFLATVIQHKIDYLNGKTFLDYLSKLKRDMLLKKMLKHIKL 117 >gi|320547748|ref|ZP_08042032.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320447508|gb|EFW88267.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 204 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR+V + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGHPTLRQVCDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + V R++ + + P + + + ++ + + Sbjct: 78 LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +TV Y + N + + G + +QHE+DH NGI+F D + Sbjct: 138 VEGYVVRHSRVTVEYFNKNGEKHRVKLKGYNSIVVQHEIDHTNGIMFYDRID 189 >gi|283768843|ref|ZP_06341754.1| peptide deformylase [Bulleidia extructa W1219] gi|283104629|gb|EFC06002.1| peptide deformylase [Bulleidia extructa W1219] Length = 188 Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 23/176 (13%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQI 52 +V +PI+R S+ ++ ++ + +L+ +ML+ +G++A+Q+ Sbjct: 8 IVKDNNPIIRTKSKEVKLPLSEEDASLLRDMLKYVQDSTDEEKAKKYNLRPAVGISAIQV 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105 G+ R++ + + D NP+ + S + + D+ V Sbjct: 68 GIPKRMMAVVVDDIDKNGNPIHYEYMLANAKIVSESAQPAYLSSGEGCLSVVQDHPGYVI 127 Query: 106 RSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 R A +TV D + I A G LA LQHELDH +G LF D + K++ + K Sbjct: 128 RKARVTVEAYDLITDSMVSIRARGYLAIVLQHELDHFDGHLFYDRID--KKNPLKK 181 >gi|68171495|ref|ZP_00544878.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88657592|ref|YP_507728.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] gi|67999078|gb|EAM85746.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa] gi|88599049|gb|ABD44518.1| putative polypeptide deformylase [Ehrlichia chaffeensis str. Arkansas] Length = 194 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 16/157 (10%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL---------- 63 L +S PIEKI+ +I+ L ++M++VM + +GL+AVQ+G R+ +I++ Sbjct: 15 LHAISHPIEKIDQEIIALANDMMKVMEHSKTVGLSAVQLGNHSRMFIINMFSGLFDIAQD 74 Query: 64 ------QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 H KN + + ++ +++ + ++ R + +RY D Sbjct: 75 IKVLSGHHSLHGKNMICINPEVLSFSAETVDLFEGCSSAKSYGLINITRPKHMDLRYTDL 134 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 I+ G L+ C+QHELDHLNGIL + + +K Sbjct: 135 LGNECIVRVYGWLSRCIQHELDHLNGILLANVVDNIK 171 >gi|15903353|ref|NP_358903.1| peptide deformylase [Streptococcus pneumoniae R6] gi|116516110|ref|YP_816751.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984798|ref|ZP_01818051.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148992660|ref|ZP_01822328.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|148997485|ref|ZP_01825090.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|149002851|ref|ZP_01827777.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149019400|ref|ZP_01834762.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168483932|ref|ZP_02708884.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|168489617|ref|ZP_02713816.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|168493357|ref|ZP_02717500.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|168575913|ref|ZP_02721828.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|169833382|ref|YP_001694872.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|182684413|ref|YP_001836160.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|221232181|ref|YP_002511334.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854897|ref|YP_002736409.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225859217|ref|YP_002740727.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|237651106|ref|ZP_04525358.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237821019|ref|ZP_04596864.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|303254384|ref|ZP_07340491.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303259052|ref|ZP_07345031.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303261732|ref|ZP_07347679.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264405|ref|ZP_07350325.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303267527|ref|ZP_07353375.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269331|ref|ZP_07355104.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|307068106|ref|YP_003877072.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|39930890|sp|Q8DP79|DEF_STRR6 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|122278363|sp|Q04JP7|DEF_STRP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238688366|sp|B1ICN7|DEF_STRPI RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|238691170|sp|B2IQS1|DEF_STRPS RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767602|sp|C1C851|DEF_STRP7 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767603|sp|B8ZL02|DEF_STRPJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767605|sp|C1CF38|DEF_STRZJ RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|15458954|gb|AAL00114.1| Peptide deformylase, N-formylmethionylaminoacyl-tRNA deformylase [Streptococcus pneumoniae R6] gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|116076686|gb|ABJ54406.1| peptide deformylase [Streptococcus pneumoniae D39] gi|147756540|gb|EDK63581.1| peptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147759145|gb|EDK66139.1| peptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147922820|gb|EDK73936.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|147928677|gb|EDK79691.1| peptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|147931270|gb|EDK82249.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168995884|gb|ACA36496.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|172042804|gb|EDT50850.1| peptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|182629747|gb|ACB90695.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|183571999|gb|EDT92527.1| peptide deformylase [Streptococcus pneumoniae SP195] gi|183576731|gb|EDT97259.1| peptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|183578335|gb|EDT98863.1| peptide deformylase [Streptococcus pneumoniae MLV-016] gi|220674642|emb|CAR69211.1| polypeptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225721908|gb|ACO17762.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|225722966|gb|ACO18819.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|301800306|emb|CBW32932.1| polypeptide deformylase [Streptococcus pneumoniae OXC141] gi|301802184|emb|CBW34930.1| polypeptide deformylase [Streptococcus pneumoniae INV200] gi|302598631|gb|EFL65670.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302637312|gb|EFL67800.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302639995|gb|EFL70451.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641161|gb|EFL71535.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302642928|gb|EFL73227.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302646217|gb|EFL76444.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|306409643|gb|ADM85070.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|332073763|gb|EGI84242.1| peptide deformylase [Streptococcus pneumoniae GA17570] gi|332073793|gb|EGI84271.1| peptide deformylase [Streptococcus pneumoniae GA41301] Length = 203 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|315612890|ref|ZP_07887801.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315315000|gb|EFU63041.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 208 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 143 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 193 >gi|307706823|ref|ZP_07643628.1| peptide deformylase [Streptococcus mitis SK321] gi|307617908|gb|EFN97070.1| peptide deformylase [Streptococcus mitis SK321] Length = 203 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 16 MKDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 Q+ + R++ + +++ + SV + Sbjct: 76 PQLDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDR 135 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 136 NVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|325697445|gb|EGD39331.1| peptide deformylase [Streptococcus sanguinis SK160] Length = 210 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAA 49 K ++ +P LR ++ + ++ + L + M++ + + G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + RL+ + D P + + + ++ + + Sbjct: 82 PQLDISKRLIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|218283087|ref|ZP_03489182.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] gi|218216156|gb|EEC89694.1| hypothetical protein EUBIFOR_01768 [Eubacterium biforme DSM 3989] Length = 186 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 16/166 (9%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLA 48 K +++ D +R S P+ ++++ L+ ML+ + ++ +G+A Sbjct: 7 TSKDIILDTDERIRMQSEPVSLPLSNEDKELLQAMLDYVRNSQDDEIAKAEGLQPAVGIA 66 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--FSDDFSVYQEGCLSIPDYRADVKR 106 AVQ+GVL +++ + + + I + + ++ V R Sbjct: 67 AVQVGVLKQMIAVVIPYEDGVDEVALVNPKIISESVQNAYLDNGEGCLSVKGEHPGHVFR 126 Query: 107 SAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 A I VR D ++ I A+G A CLQHE+DHL+G LF DH+ Sbjct: 127 HARIKVRGYDLIQDKNVTISAEGYFAICLQHEIDHLSGTLFYDHID 172 >gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens] Length = 225 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +V +P P LR + + + + M ++MY+ G+GLAA Q+GV RL+V + Sbjct: 54 IVAYPHPALRARNGDLAPGDLAAAAPLAARMFDLMYAAGGVGLAAPQVGVNARLMVFNPS 113 Query: 65 -DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D A + + NP+I+ S + V EGCLS P V R A++ V +D + Sbjct: 114 GDAARTGDEVALANPRIVAASAELEVGDEGCLSFPGMGGPVARHAWVEVAGLDLEGRAIS 173 Query: 124 IYADGLLATCLQHELDHLNGILFI 147 G A QHE DHL+G++++ Sbjct: 174 RAYAGWDARVFQHEYDHLDGVVYV 197 >gi|307702002|ref|ZP_07639010.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307616647|gb|EFN95836.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 203 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + + M E M G+GLAA Sbjct: 16 MKDIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 Q+ + R++ + +++ + SV + Sbjct: 76 PQLDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDR 135 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 136 NVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|270293023|ref|ZP_06199234.1| peptide deformylase [Streptococcus sp. M143] gi|270279002|gb|EFA24848.1| peptide deformylase [Streptococcus sp. M143] Length = 203 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRVV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188 >gi|331266683|ref|YP_004326313.1| peptide deformylase [Streptococcus oralis Uo5] gi|326683355|emb|CBZ00973.1| peptide deformylase [Streptococcus oralis Uo5] Length = 203 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVAFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRVIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DHLNGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHLNGIMFYDRIN 188 >gi|300768287|ref|ZP_07078192.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494351|gb|EFK29514.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 186 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 + ++ + LR ++ ++ ++ L ++M+E + ++ +GLAA Sbjct: 4 MRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQNPELAKKYGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103 Q+ V ++ + + P+ + D Sbjct: 64 PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|171778809|ref|ZP_02919871.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282455|gb|EDT47879.1| hypothetical protein STRINF_00730 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 204 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR++ + ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGHPTLRKICDDVTFPLSDEEIILGEKMMQFLKNSQDPVTAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + V R++ + + P + + + ++ + + Sbjct: 78 LNVSKRIIAVLVPNMEDKDGNPPKEAYSLQEVMYNPKVVAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +TV Y D N + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VEGYVVRHSRVTVEYFDKNGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189 >gi|328944870|gb|EGG39030.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 210 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR ++ + + +M + + M E M G+GLAA Sbjct: 22 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAA 81 Query: 50 VQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSI 97 Q+ + RL+ + + ++ K SV + Sbjct: 82 PQLDISKRLIAVLVPNPEDEEGNPTKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 141 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 142 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 195 >gi|118465399|ref|YP_883852.1| peptide deformylase [Mycobacterium avium 104] gi|118166686|gb|ABK67583.1| polypeptide deformylase [Mycobacterium avium 104] Length = 177 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 7/132 (5%) Query: 26 SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV-------FINP 78 +D++ LI +M + M + G+GLAA QIGV R+ V D D Sbjct: 11 ADLVKLIADMYDTMDAAHGVGLAANQIGVGLRVFVYDCADDRGLTERRRGVVVNPVLETS 70 Query: 79 KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHEL 138 +I D EGCLS+P R+++ V +D + I GL A LQHE Sbjct: 71 EIPETMPDPDTDDEGCLSVPGESFPTGRASWARVTGLDADGSPVSIEGHGLFARMLQHET 130 Query: 139 DHLNGILFIDHL 150 HL+G L++D L Sbjct: 131 GHLDGFLYLDRL 142 >gi|226199013|ref|ZP_03794576.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] gi|225929113|gb|EEH25137.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9] Length = 131 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + ++ DP L V+RP+E N ++ L+ +M E M+ +G GLAA QIGV ++++ Sbjct: 1 MIREILKMGDPRLLEVARPVEAFNTPELHALVADMFETMHHANGAGLAAPQIGVGLQVII 60 Query: 61 IDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 A V +NP I D EGCLS+P R V R + Sbjct: 61 FGFGSSERYPEAPPVPETVLVNPSIEYLPPDLEEGWEGCLSVPGLRGVVSRYRRVRYSGF 120 Query: 116 DCNA 119 D Sbjct: 121 DQYG 124 >gi|308180961|ref|YP_003925089.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046452|gb|ADN98995.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 186 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 19/168 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 + ++ + LR ++ + ++ L ++M+E + ++ +GLAA Sbjct: 4 MRDIIREGNHTLRAEAKQVNFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103 Q+ V ++ + + P+ + D Sbjct: 64 PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|306825519|ref|ZP_07458859.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432457|gb|EFM35433.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 208 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + N M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPQEAYDLQAVMYNPKIVSHSVQDAALGEGEGCLSVDRVV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 193 >gi|28378768|ref|NP_785660.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254556973|ref|YP_003063390.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|38257321|sp|Q88VB2|DEF_LACPL RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|28271605|emb|CAD64511.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254045900|gb|ACT62693.1| peptide deformylase [Lactobacillus plantarum JDM1] Length = 186 Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 19/168 (11%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAA 49 + ++ + LR ++ ++ ++ L ++M+E + ++ +GLAA Sbjct: 4 MRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVGLAA 63 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRAD 103 Q+ V ++ + + P+ + D Sbjct: 64 PQVDVSEQMAAVLVPSENEDDEPVFKDVIINPVIISHSVQPGALTEGEGCLSVDRDIAGY 123 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R IT+RY + + + I A QHE+DHL+GILF DH++ Sbjct: 124 VIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHIN 171 >gi|269114884|ref|YP_003302647.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis] gi|268322509|emb|CAX37244.1| Peptide deformylase (Polypeptide deformylase) [Mycoplasma hominis ATCC 23114] Length = 185 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 17/167 (10%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV--------MYSTDGIGLAAVQIGVL 55 LV P+ +LR S+ +E + ++ LI M+ +G+AAVQ G+L Sbjct: 8 KLVQLPEKVLRNKSKNVELPLTAEDDLLIQKMIFHVDDSQTPQTKFRPAVGVAAVQYGIL 67 Query: 56 YRLVVIDLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 + + ++D + NP++ + + S V R + Sbjct: 68 KNIFYVMVKDDQNNYIFRDALINPIMLSHSNHKISLQEGEGCLSVKESDAGQEGFVYRYS 127 Query: 109 FITVRYMDCNAQHQII-YADGLLATCLQHELDHLNGILFIDHLSRLK 154 + ++ + + I G A LQHE DHL G LFID +++ + Sbjct: 128 RVVIKAYSYFEKKEKIYDVSGYPAIVLQHEYDHLQGKLFIDRINKNQ 174 >gi|75766232|pdb|2AI7|A Chain A, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 485345 gi|75766238|pdb|2AIA|A Chain A, S.Pneumoniae Pdf Complexed With Sb-543668 Length = 203 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|163751756|ref|ZP_02158973.1| peptide deformylase [Shewanella benthica KT99] gi|161328320|gb|EDP99480.1| peptide deformylase [Shewanella benthica KT99] Length = 114 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 39/76 (51%), Positives = 50/76 (65%) Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 +EGCLSIP YRA V RS +TV+ +D + I D LA LQHE+DHL GI+F DHL Sbjct: 39 EEGCLSIPGYRAKVARSEQVTVKALDRTGKPFDIETDTFLAIVLQHEIDHLQGIVFTDHL 98 Query: 151 SRLKRDMITKKMSKLV 166 S+LK+ + KK+ K Sbjct: 99 SKLKQQIALKKVKKYA 114 >gi|289645164|ref|ZP_06477181.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505026|gb|EFD26107.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 529 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 13/161 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51 M +V IL + +RP + ++ + I+ + + G+G+AA Q Sbjct: 351 MAAVGIVQQGAEILSKPARPFDLPAEAEDARRVVAELSSAIERVSALHTFGKGMGIAAPQ 410 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ ++ D +NP +I S + EGCLS D R V R + Sbjct: 411 VGINRAAAIVRTVDGDTIT----LLNPTVIEASPETDEQYEGCLSFFDVRGLVPRPLTLH 466 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V + D + +II + LA + HE+DHL+G L+ D + Sbjct: 467 VEHADIDGTRRIIAFEKGLARLVAHEIDHLDGHLYTDKMRP 507 >gi|157150181|ref|YP_001449640.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|189083079|sp|A8AV30|DEF_STRGC RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|157074975|gb|ABV09658.1| polypeptide deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 204 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 + ++ +P LR V+ + + +M + N M E + G+GLAA Sbjct: 16 MRDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + R++ + + + +P K + ++ + + Sbjct: 76 PQLDISRRIIAVLLPNPEDENGNSPQEAYALKEVMYNPKIVAHSVQDAALADGEGCLSVD 135 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R A +TV Y D N + + G A +QHE+DH+NGI+F D ++ Sbjct: 136 RDVPGYVVRHARVTVDYFDKNGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRIN 189 >gi|289168210|ref|YP_003446479.1| peptide deformylase [Streptococcus mitis B6] gi|307704979|ref|ZP_07641866.1| peptide deformylase [Streptococcus mitis SK597] gi|322376907|ref|ZP_08051400.1| peptide deformylase [Streptococcus sp. M334] gi|288907777|emb|CBJ22617.1| peptide deformylase [Streptococcus mitis B6] gi|307621430|gb|EFO00480.1| peptide deformylase [Streptococcus mitis SK597] gi|321282714|gb|EFX59721.1| peptide deformylase [Streptococcus sp. M334] Length = 203 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|307609411|emb|CBW98900.1| polypeptide deformylase [Legionella pneumophila 130b] Length = 200 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 13/164 (7%) Query: 2 VKKPLVI----FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 + ++ +L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ Sbjct: 1 MALEIITIEKTENHHMLKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAK 60 Query: 57 RLVVIDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 +++ + + + A ++ EGC S+ V R Sbjct: 61 QIIAVYIPEEAQLLRDNAKIFPMHILINPSYEPLPHTRIISDFEGCYSVSSKAGKVPRYD 120 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++Y D +G A LQHE+DHLNG+L D L+ Sbjct: 121 EIRLKYYDEEGNAHQQIENGFYARVLQHEIDHLNGVLITDRLTP 164 >gi|75766239|pdb|2AIE|P Chain P, S.Pneumoniae Polypeptide Deformylase Complexed With Sb- 505684 Length = 203 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|221120519|ref|XP_002163626.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 196 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 L DP+LR+V+R + D +LI M+ +M S G G+AA Q+GV +++ I Sbjct: 22 KLRQNGDPVLRKVAREVPLEYINTQDFKDLITKMILIMRSNKGQGIAAPQVGVDLQVIAI 81 Query: 62 DLQDH------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 + +H +FINPK+ + + + ++EGCLSI Sbjct: 82 EFTEHDLEMATKQYGKNEVEKRQMRTFPLHIFINPKLKIINYETTRFEEGCLSILGTVGV 141 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 V+R + + +++ + ++ DG LA +QHE+ HL G L +D Sbjct: 142 VQRYREVQLEFVNEKGVNVLMNFDGWLARMVQHEMHHLKGFLIVD 186 >gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Deformylase From Streptococcus Pneumoniae Length = 215 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 30 DIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 89 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 90 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGXLSVDRNV 149 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 150 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 200 >gi|307709244|ref|ZP_07645702.1| peptide deformylase [Streptococcus mitis SK564] gi|307619827|gb|EFN98945.1| peptide deformylase [Streptococcus mitis SK564] Length = 203 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLQAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVIRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|319946246|ref|ZP_08020486.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747628|gb|EFV99881.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 204 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ P LR ++ + + +M + + M E + G+GLAA Q Sbjct: 18 DIIREGHPTLRAIAEEVTFPLSDQEIILGEKMMQFLHHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + P + + + ++ + + + Sbjct: 78 LDISKRIIAVLVPNPEDEEGNPPKEAYSIQEVMYNPKIVSHSVQDAALGDGEGCLSVDRN 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G + +QHE+DH+NG++F D ++ Sbjct: 138 VPGYVVRHARVTVDYYDKTGEKHRIKLKGYNSIVVQHEIDHINGVMFYDRINP 190 >gi|60117243|gb|AAX14403.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila mojavensis] Length = 134 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 8/133 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P+VI PD L + + IN I L+++M E MY +G+GLAAVQ+GVL R+ V Sbjct: 1 MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60 Query: 61 IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +D+Q P INP+I SD+ + +EGCLSIP+ ++KR ++TV Sbjct: 61 VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120 Query: 113 RYMDCNAQHQIIY 125 +Y D + + Q + Sbjct: 121 KYKDLDNEEQTLK 133 >gi|54296635|ref|YP_123004.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] gi|53750420|emb|CAH11814.1| hypothetical protein lpp0666 [Legionella pneumophila str. Paris] Length = 229 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-------D 65 L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + D Sbjct: 46 LKTRAENIQFPLNREDQDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 105 Query: 66 HAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 +A + INP + EGC S+ V R I ++Y D Sbjct: 106 NAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 165 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 +G A LQHE+DHLNG+L D L+ Sbjct: 166 IENGFYARVLQHEIDHLNGVLITDRLTP 193 >gi|302870584|ref|YP_003839221.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315506821|ref|YP_004085708.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302573443|gb|ADL49645.1| formylmethionine deformylase [Micromonospora aurantiaca ATCC 27029] gi|315413440|gb|ADU11557.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 510 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIEKINSD---------IMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 +V D +LR+ +R + + + ++ + E+ + G+GLAA Q+G+ + Sbjct: 338 IVQRGDDLLRQRARQFDLPADEQHARQVIDRLAAMLVRLDELHPFSKGVGLAAPQLGIGW 397 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 ++ D +P+V +NP+++ + + EGCLS D+R V R I V + Sbjct: 398 SAALVRPAD--RAADPVVLLNPRVVDAATETDEQYEGCLSFFDHRGLVPRPLRIDVEHAL 455 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 456 WDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 491 >gi|52840852|ref|YP_094651.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627963|gb|AAU26704.1| polypeptide deformylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 237 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 13/164 (7%) Query: 2 VKKPLVI----FPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 + ++ +L+ + I+ ++ + +LI+ M + +Y+ G+GLAA Q+ Sbjct: 38 MSLEIITIEKIENHHMLKTRAENIQFPLSREDKDLIEAMKKKLYALGGVGLAAPQVNSAK 97 Query: 57 RLVVIDLQ-------DHAHRKNPMVFINPKIITFSDDFSV-YQEGCLSIPDYRADVKRSA 108 +++ + + D+A + INP + EGC S+ V R Sbjct: 98 QIIAVYIPEEAQLLRDNAKIYPMHILINPNYEPLPQARIISDFEGCYSVSSKAGKVPRYD 157 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I ++Y D +G A LQHE+DHLNG+L D L+ Sbjct: 158 EIQLKYYDEEGNVHQQIENGFYARVLQHEIDHLNGVLITDRLTP 201 >gi|157964118|ref|YP_001498942.1| polypeptide deformylase [Rickettsia massiliae MTU5] gi|157843894|gb|ABV84395.1| Polypeptide deformylase [Rickettsia massiliae MTU5] Length = 232 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 11 DPILRRVSRPIEKI--NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI------- 61 D +R ++ + + D+ ++ + + GLAA QIG+ +++ Sbjct: 55 DKTIRIKAKTLNFPLSSEDLRDISILEKKYDQEENCAGLAAPQIGISKCIIIFAVHEDAE 114 Query: 62 ---DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 D ++INP D EGC S+ + V R I D N Sbjct: 115 LKKWRPDLKDTMPKTIWINPSYKPIGIDKHEDYEGCFSVENAIGPVARFKKIHYHAYDIN 174 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 A+G LA +QHE+DHLNG +F+D+++ ++ M ++ ++ + Sbjct: 175 GNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAP-QKIMTKEEYLEMRK 222 >gi|148360734|ref|YP_001251941.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|296106200|ref|YP_003617900.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] gi|148282507|gb|ABQ56595.1| polypeptide deformylase [Legionella pneumophila str. Corby] gi|295648101|gb|ADG23948.1| polypeptide deformylase [Legionella pneumophila 2300/99 Alcoy] Length = 200 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAH---- 68 L+ + I+ +N + +LI+ M + +Y+ G+GLAA Q+ +++ + + + A Sbjct: 17 LKTRAENIQFPLNREDKDLIEAMKKKLYALGGVGLAAPQVNSAKQIIAVYIPEEAQLLRD 76 Query: 69 ----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ EGC S+ V R I ++Y D Sbjct: 77 NAKIFPMHILINPNYEPLPHTRIISDFEGCYSVSSKAGKVPRYDEIQLKYYDEEGNVHQQ 136 Query: 125 YADGLLATCLQHELDHLNGILFIDHLSR 152 +G A LQHE+DHLNG+L D L+ Sbjct: 137 IENGFYARVLQHEIDHLNGVLITDRLTP 164 >gi|300854965|ref|YP_003779949.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300435080|gb|ADK14847.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 160 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55 + K +++ + L + S P+EK + I + ++ + G +AA QIGV Sbjct: 1 MIKEILLLGNDALYKKSLPVEKEDMDSIKETVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + + + + C+S P+ VKR ++ Y Sbjct: 61 KRLIYMYIDK------PIVFINPVLKFDNKEMMDVMDDCMSFPNLLVKVKRYKECSIIYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 D N + + G L+ +QHE DHL+GIL K I K Sbjct: 115 DINFADKTLKFKGDLSELIQHEYDHLDGILATMRAIDNKSFYIKSK 160 >gi|37626151|gb|AAQ96527.1| hypothetical protein [Vibrio phage VP16T] Length = 137 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 ++ P L ++ + D+ +L+ +M M + GIGLA Q+GVL R++V+ Sbjct: 2 KILKDDAPELHAIAAEVPH-GEDVKDLVLDMTAAMTAAGGIGLAGNQVGVLKRIIVLRC- 59 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 INP I +D EGCLS P KR + V D + Q I Sbjct: 60 ----PTFKGCVINPIITRHTDGHVYSPEGCLSYPGKTVAKKRRNKVVVEGYDMDWQPITI 115 Query: 125 YADGLLATCLQHELDHLNGILF 146 A GL A CLQHE+DHLNG+ Sbjct: 116 AAKGLTAFCLQHEIDHLNGVTI 137 >gi|301794480|emb|CBW36919.1| polypeptide deformylase [Streptococcus pneumoniae INV104] Length = 203 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEGIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|311745501|ref|ZP_07719286.1| peptide deformylase [Algoriphagus sp. PR1] gi|126578054|gb|EAZ82274.1| peptide deformylase [Algoriphagus sp. PR1] Length = 161 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 ++ DP L V P+ E++ L + M ++ + G G+AA Q+G++ Sbjct: 3 TIHDILKLGDPRLYEVCDPVLKSELEQVPIWTQQLHEAMEDIRKAYGFGRGIAAPQLGIM 62 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R+ ++L P + +NP++ S++ + C+S P V+R +T+ Y Sbjct: 63 KRMFYLNLDK------PYIILNPELKNPSEEMFELWDDCMSFPKLLVKVRRHQSLTLSYR 116 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D N Q G + +QHE DHL+G+L K + Sbjct: 117 DQNWTLQEWKVSGENSELIQHEYDHLDGVLCTMRAIDQKSFRWKE 161 >gi|315222331|ref|ZP_07864237.1| peptide deformylase [Streptococcus anginosus F0211] gi|315188664|gb|EFU22373.1| peptide deformylase [Streptococcus anginosus F0211] Length = 204 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V++ + + ++ + N M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + P + + ++ + + + Sbjct: 78 LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKVVAHSVQDAALAEGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189 >gi|326803937|ref|YP_004321755.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] gi|326650536|gb|AEA00719.1| peptide deformylase [Aerococcus urinae ACS-120-V-Col10a] Length = 192 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQ 51 + +P+L R + I +N +M+E +Y++ GLAA Q Sbjct: 6 DITRDGNPVLHREADTITFPLNEAQKQAAHDMMEYLYNSQDEEKGPELGLRAGVGLAAPQ 65 Query: 52 IGVLYRLVV--IDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102 +G+ +++ + + ++ + SV + D Sbjct: 66 VGIGEKMIALLVPNIEDPDSDEEIILEGVMVNPKIISHSVEKVCLREGEGCLSVDDDVSG 125 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A IT+ Y D H G A LQHE+DHL+G L+ + +++ Sbjct: 126 YVPRYARITITYDDLEGNHFKKRFKGYPAIVLQHEIDHLDGHLYYERINK 175 >gi|222152449|ref|YP_002561624.1| peptide deformylase [Streptococcus uberis 0140J] gi|254767604|sp|B9DTD6|DEF_STRU0 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|222113260|emb|CAR40782.1| polypeptide deformylase [Streptococcus uberis 0140J] Length = 204 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 70/173 (40%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR+ + + ++ + + L + M++ + + G+GLAA Q Sbjct: 18 DIIREGNPTLRKEASEVSLPLSDEDIILGEKMMQFLKHSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + + + P + + I ++ + + Sbjct: 78 LDISKRIIAVLVPNMEDSEGNPPKEAYSLQEIMYNPKIVAHSVQEAALADGEGCLSVDRL 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R + +TV Y D I G A +QHE+DH+NGI+F D ++ Sbjct: 138 VEGYVVRHSRVTVDYYDKKGDKHRIKLKGYNAIVVQHEIDHINGIMFYDRINS 190 >gi|306829233|ref|ZP_07462423.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304428319|gb|EFM31409.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 208 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 23 DIIREGNPTLRAVAEEVTFPLSDQDIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 82 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 83 LDISKRIIAVLVPNIVEEGETPEEAYDLQAIMYNPKIVSHSVQNAALGEGEGCLSVDRNV 142 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 143 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 193 >gi|262281961|ref|ZP_06059730.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262262415|gb|EEY81112.1| polypeptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 204 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAA 49 K ++ +P LR V+ + + +M + N M E + G+GLAA Sbjct: 16 MKDIIREGNPTLRAVAEEVSFPLADEDILLGEKMMQFLHNSQDPVMAEKLGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVID-LQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSI 97 Q+ + R++ + NP + + Sbjct: 76 PQLDISRRIIAVLLPNPEDENGNPPQDAYALKEVMYNPKIVAHSVQDAALADGEGCLSVD 135 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 D V R A +TV Y D + + + G A +QHE+DH+NGI+F D ++ Sbjct: 136 RDVPGYVVRHARVTVDYFDKDGEKHRVKLKGYKAIVVQHEIDHINGIMFYDRIN 189 >gi|67458516|ref|YP_246140.1| polypeptide deformylase [Rickettsia felis URRWXCal2] gi|67004049|gb|AAY60975.1| Polypeptide deformylase [Rickettsia felis URRWXCal2] Length = 224 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 26 SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH----------AHRKNPMVF 75 D+ ++ + + GLAA QI + +++ + ++ ++ Sbjct: 64 EDLRDVSILEKKYDQEENCAGLAAPQISISKCIIIFAVHENEELKKWRPNLKDTMPKTIW 123 Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 INP D EGC S+ + V R I D N A+G LA +Q Sbjct: 124 INPSYKPIGIDKHEDYEGCFSVENATGPVARFKKIHYHAYDINGNQIQGIAEGFLARVIQ 183 Query: 136 HELDHLNGILFIDHLSRLK---RDMITKKMSKLVQLRD 170 HE+DHLNG +F+D+ + K ++ +K K ++ + Sbjct: 184 HEIDHLNGKVFLDYAAPKKIMTKEKYLEKRKKAMEQEN 221 >gi|73662866|ref|YP_301647.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495381|dbj|BAE18702.1| putative N-formylmethionyl-tRNA deformylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 162 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M K LV PIL + + K + ++ L+ ++ + MY + + A QIGV ++ + Sbjct: 1 MTIKQLVTSKHPILNKSIPDVTKFDENLEQLLLDLEDTMYDVEASAICAPQIGVAQKVAM 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + INP+II+ SD EG +SIP+ +V+RS I V+ D Sbjct: 61 I----DMEMDGLLQLINPQIISESDTKVTDLEGSISIPNVYGEVERSKMIVVKSNDKKGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +DH G LF + + + Sbjct: 117 EVEMTAYDDIARMILHMIDHFEGRLFTERVEKF 149 >gi|312865443|ref|ZP_07725670.1| peptide deformylase [Streptococcus downei F0415] gi|311098961|gb|EFQ57178.1| peptide deformylase [Streptococcus downei F0415] Length = 204 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ +P LR V++ +E ++ + + L + M+ E M G+GLAA Q Sbjct: 18 DIIREGNPTLREVAKDVELPLSDEDIILGEKMMQFLKNSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + ++ P SV + + Sbjct: 78 LDISKRIIAVLVPNPEDKEGNPPAQPYSMQEVMYNPRIVSHSVQDAALADGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +TV Y+D N Q I G + +QHE+DH NGI+F DH++ Sbjct: 138 VPGYVVRHSRVTVEYVDKNGDKQKIKLRGYNSMVVQHEIDHTNGIMFYDHIN 189 >gi|294786544|ref|ZP_06751798.1| peptide deformylase [Parascardovia denticolens F0305] gi|294485377|gb|EFG33011.1| peptide deformylase [Parascardovia denticolens F0305] Length = 234 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 27/173 (15%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V+ Sbjct: 29 LPIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV 88 Query: 62 DLQ-------------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS 96 + + INP D+ + + EGCLS Sbjct: 89 EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLS 148 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Y+A KR I + D A QHE DHL+G ++ID Sbjct: 149 FDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDK 201 >gi|315226122|ref|ZP_07867910.1| peptide deformylase [Parascardovia denticolens DSM 10105] gi|315120254|gb|EFT83386.1| peptide deformylase [Parascardovia denticolens DSM 10105] Length = 244 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 27/173 (15%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLID-NMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V +P+LR + P + ++ + ++L+ M + M + G+GLA QIG+ + V+ Sbjct: 39 LPIVQMGEPVLRLKTVPYQGQLTASTLDLLKKRMRKTMLAAPGVGLAGPQIGLGLAIAVV 98 Query: 62 DLQ-------------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLS 96 + + INP D+ + + EGCLS Sbjct: 99 EDHVRTVASEAASPTDEAAGDFDDADDPRGISDFPFHMIINPSYEPLDDETASFYEGCLS 158 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 Y+A KR I + D A QHE DHL+G ++ID Sbjct: 159 FDGYQAVRKRWLNIRAHWFDEAGVEHAAELHKWPARIFQHETDHLSGEVYIDK 211 >gi|86742919|ref|YP_483319.1| formylmethionine deformylase [Frankia sp. CcI3] gi|86569781|gb|ABD13590.1| formylmethionine deformylase [Frankia sp. CcI3] Length = 549 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51 M +V + ILR+ +RP N ++ + ++ + + G+G+AA Q Sbjct: 372 MAAVGIVQEGEAILRQPARPFALPNEAEDARRVVAELSSALERVSALHTFGKGLGIAAPQ 431 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ ++ +NP +I S + EGCLS D R V R + Sbjct: 432 VGINRAAAIVRTAGGDTLT----LLNPSVIETSRETDEQYEGCLSFFDVRGLVPRPLELH 487 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V + D + I LA + HE+DHL+G L+ D + Sbjct: 488 VEHTDIDGNRHITVYRQGLARLVAHEIDHLHGQLYTDRM 526 >gi|153952996|ref|YP_001393761.1| Def1 [Clostridium kluyveri DSM 555] gi|219853653|ref|YP_002470775.1| hypothetical protein CKR_0310 [Clostridium kluyveri NBRC 12016] gi|146345877|gb|EDK32413.1| Def1 [Clostridium kluyveri DSM 555] gi|219567377|dbj|BAH05361.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 161 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMN-----LIDNMLEVMYSTD-GIGLAAVQIGVL 55 + K +++ + L R S P+E+ + D++ L D +++ + G +AA QIGV Sbjct: 1 MIKEILLLGNYDLYRKSSPVEEKDIDLIKQTISNLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + + P++FINP + + + + C+S PD VKR TV Y Sbjct: 61 KRLIYMYIDE------PLIFINPILTFPNKEMMEVMDDCMSFPDLLVKVKRFKNCTVTYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 D N + I +G L+ +QHE DHL+GIL K Sbjct: 115 DMNFKENSIKFEGDLSELIQHEYDHLDGILATMRAIDSK 153 >gi|15901306|ref|NP_345910.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|111657373|ref|ZP_01408130.1| hypothetical protein SpneT_02001427 [Streptococcus pneumoniae TIGR4] gi|148990264|ref|ZP_01821475.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149007273|ref|ZP_01830931.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149011684|ref|ZP_01832880.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168486151|ref|ZP_02710659.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|168491354|ref|ZP_02715497.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225857082|ref|YP_002738593.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225860775|ref|YP_002742284.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230951|ref|ZP_06964632.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254975|ref|ZP_06978561.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502590|ref|YP_003724530.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307126974|ref|YP_003879005.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|17432945|sp|Q9F2F0|DEF_STRPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767606|sp|C1CLF5|DEF_STRZP RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|254767607|sp|C1CQR2|DEF_STRZT RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus pneumoniae] gi|14972945|gb|AAK75550.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus pneumoniae] gi|147761077|gb|EDK68045.1| peptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147764115|gb|EDK71047.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147924403|gb|EDK75493.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|183570800|gb|EDT91328.1| peptide deformylase [Streptococcus pneumoniae CDC1087-00] gi|183574326|gb|EDT94854.1| peptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|225726126|gb|ACO21978.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225727795|gb|ACO23646.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238185|gb|ADI69316.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|306484036|gb|ADM90905.1| peptide deformylase [Streptococcus pneumoniae 670-6B] gi|327389641|gb|EGE87986.1| peptide deformylase [Streptococcus pneumoniae GA04375] gi|332074778|gb|EGI85252.1| peptide deformylase [Streptococcus pneumoniae GA17545] Length = 203 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|148377446|ref|YP_001256322.1| formylmethionine deformylase [Mycoplasma agalactiae PG2] gi|148291492|emb|CAL58878.1| Formylmethionine deformylase [Mycoplasma agalactiae PG2] Length = 187 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 61/173 (35%), Gaps = 22/173 (12%) Query: 1 MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAA 49 M LV P +LR+ S + + S+ + L M+ + + G+G+AA Sbjct: 1 MSVYNVDLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102 VQ G+L R+ I++ + V + S + + Sbjct: 61 VQYGILKRVFYINITEDMVDDKKQVLRDVFFNPTIIAMSNSKIALSQGEGCLSVGRNIPN 120 Query: 103 DV----KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + + G A QHELDHL G LFID + Sbjct: 121 QSGLVYRHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173 >gi|160913556|ref|ZP_02076247.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] gi|158434108|gb|EDP12397.1| hypothetical protein EUBDOL_00032 [Eubacterium dolichum DSM 3991] Length = 185 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 17/165 (10%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAV 50 K ++ D ++R+ S +E +N++ L+ +ML+ + + +G+AA+ Sbjct: 6 KDIIQDSDTVIRKKSVNVELPLNAEDKQLLMDMLQYVRDSQDNELAEQNGLRPAVGIAAI 65 Query: 51 QIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD----VKR 106 Q+G+ +++ + + D N +I++ S S + G + + + Sbjct: 66 QLGIPKKMLAVVVPDEEGNSQEFALANARIVSESVQLSYLKNGEGCLSVEKEHQGLVPRH 125 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + Y + I A LA LQHE+DH +G LF D ++ Sbjct: 126 ARITVKAYDLLQNKEITIKASDYLAIVLQHEIDHFSGTLFYDRIN 170 >gi|307720000|ref|YP_003891140.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306978093|gb|ADN08128.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 269 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K ++ +P P L + N ++ +LI ++ + + + + L+A QIG Y ++V Sbjct: 1 MVKEIIKYPTTPSL-EFGANVRHFNQELFDLIKDLKDTIEANNLDALSAFQIGSPYAVIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D + + I + E P A KR I + Y D +A Sbjct: 60 IKKDDGEFLE-----LINPRIIKREGTITPVESTAYFPGLSAKTKRYEKIKLMYEDRDAN 114 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 Q + A+G LA +Q +LD++ G F L +R ++ K+ Sbjct: 115 QQFLEAEGDLAVTIQRKLDYVFGSNFRVRLDDNERKLLDSKLE 157 >gi|325695505|gb|EGD37405.1| peptide deformylase [Streptococcus sanguinis SK150] Length = 220 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 25/174 (14%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAA 49 K ++ +P LR ++ + ++ + L + M++ + + G+GLAA Sbjct: 32 MKDIIREGNPTLRAIAEEVSFPLSDQEIILGEKMMQFLKHSQDPVTAEKMGLRGGVGLAA 91 Query: 50 VQIGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSI 97 Q+ + R++ + D P + + + ++ + + Sbjct: 92 PQLDISKRIIAVLVPNPDDEEGNPPKEAYSLQTLMYNPKIVAHSVQDAALADGEGCLSVD 151 Query: 98 PDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + Q I G A +QHE+DH+NGI+F D ++ Sbjct: 152 REVPGYVVRHARVTVDYFDKDGQKHRIKLKGYNAIVVQHEIDHINGIMFYDRIN 205 >gi|313901227|ref|ZP_07834715.1| peptide deformylase [Clostridium sp. HGF2] gi|312954185|gb|EFR35865.1| peptide deformylase [Clostridium sp. HGF2] Length = 184 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V D I+R S P+ + ++ L+ +ML E +G+AA+Q Sbjct: 7 DIVKDTDAIVRTKSEPVTLPLGAEDEALLQDMLTYVRSSQDAEIAEKENLRPAVGIAAIQ 66 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109 +GV R++ + + + + + + ++ V R+A Sbjct: 67 LGVPKRMLAVVVPNEEGIDEYALVNPRIVSESVQRAYLKNGEGCLSVENEHEGIVPRAAR 126 Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITVR D Q I A LA LQHE+DH +G LF D +++ Sbjct: 127 ITVRGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44] gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44] Length = 124 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M DG+GLAA Q+GV ++ V+D+ D + INP I+ + + C Sbjct: 1 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTG---KIELINPVILEKRGEQVGPEG-C 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 LS P +V+R+ +I VR + + ++ AD LA +QHE+DHL+G+LF ++R Sbjct: 57 LSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVTR 114 >gi|329115956|ref|ZP_08244673.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906361|gb|EGE53275.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 204 Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 25/173 (14%) Query: 5 PLVIFPDPILRRVSRPIE--------KINSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR + + + +M + N M E + G+GLAA Q Sbjct: 18 DIIREGNPTLRAHAEEVSLPLSDQDLILGEKMMQFLKNSQDPVMAEKLGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + V R++ + + A P + K + ++ + + Sbjct: 78 LDVSKRIIAVLVPNMEDAEGNPPKEAFSIKEVMYNPKIVSHSVQDAALADGEGCLSVDRL 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A +TV Y D + I G A +QHE+DH+NGI+F D ++ Sbjct: 138 IEGYVVRHARVTVEYFDKEGEKHRIKLKGYNAIVVQHEIDHINGIMFYDRINS 190 >gi|145596781|ref|YP_001161078.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145306118|gb|ABP56700.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 187 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61 +P+V P +L R R ++ + L +++ M + +GLAA QIGV R+ + Sbjct: 23 VRPVVSAPAAVLSRAGRDVDPTAEQTVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82 Query: 62 DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118 D+ A + + ++ + + +EGC+S+PD DVKR+ + V Sbjct: 83 DVTGHPKASTGHGAFVLCNAVVVEASRWKAGREGCMSVPDLTGDVKRAGRLVVEGDLPGT 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + D A LQHE+DH G+LF+D + Sbjct: 143 GKTVRLVTDAFEARALQHEIDHCAGLLFLDRV 174 >gi|293364031|ref|ZP_06610767.1| peptide deformylase [Mycoplasma alligatoris A21JP2] gi|292552521|gb|EFF41295.1| peptide deformylase [Mycoplasma alligatoris A21JP2] Length = 183 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 18/170 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQ 51 M LV P +LR+ S + + + ++L + M+ E G+G+AAVQ Sbjct: 1 MFDVKLVKLPKKVLRQKSVNVSIPLIQEDIDLAEKMIYHIDDSQKENSKFRPGVGVAAVQ 60 Query: 52 IGVLYRLVVIDLQDHAHR--------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+L + + ++D + NP + + T + P Sbjct: 61 YGILKNVFYVHVRDSVNNKEIFRDVLFNPKIISRSETKTALSEGEGCLSVHEDWPGQEGF 120 Query: 104 VKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R A + V + G +A QHELDHL G LFID +++ Sbjct: 121 VHRDARVIVEAYSYFQKKVVTFDVFGYVAIVFQHELDHLQGNLFIDRINK 170 >gi|322386945|ref|ZP_08060569.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269227|gb|EFX52163.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 210 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR V+ + + +M + + M E M G+GLAA Q Sbjct: 24 DIIREGNPTLRAVAEEVSFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 83 Query: 52 IGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 + + R++ + + ++ K SV + + Sbjct: 84 LDISKRIIAVLVPNLEDEEGNPPKEAYSLAQVMYNPKVVAHSVQDAALADGEGCLSVDRE 143 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + Q I G + +QHE+DH+NGI+F D ++ Sbjct: 144 VPGYVVRHARVTVDYFDKDGQKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 195 >gi|323454882|gb|EGB10751.1| hypothetical protein AURANDRAFT_22058 [Aureococcus anophagefferens] Length = 175 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + L P LR ++P+ + + ++ ++++ M +G G+A QIG +R+ Sbjct: 20 AVRALPPLGTPCLREQAKPVPEAMFGTPALDAIVADLVDTMRDANGAGIAGPQIGEGWRI 79 Query: 59 VVI------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 V+ + + VF+NP++ + EGCLSIP R V R++ + Sbjct: 80 FVVEGSGANPRYPYKPKLPLTVFVNPELEVVDEAPMEIFEGCLSIPGVRGRVARASKVRC 139 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + A G A LQHE DHL+GILF D Sbjct: 140 AARRPDGSSFSVLAAGHAAGTLQHEQDHLDGILFPD 175 >gi|319939890|ref|ZP_08014245.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319810901|gb|EFW07220.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 204 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ +P LR V++ + + + L + ML+ + ++ G+GLAA Q Sbjct: 18 DIIREGNPTLRAVAKDVTFPLTEQEVILGEKMLQFLRNSQDPATAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI--DLQDHAHRKNPMVFINPKIITFSDDFSVY----------QEGCLSIPD 99 + + R++ + P + + ++ + + + Sbjct: 78 LDLSKRIIAVLVPNLPDKEGNPPKEAYALQTVMYNAKIVAHSVQDAALAEGEGCLSVDRE 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + I G + +QHE+DH NGI+F D ++ Sbjct: 138 VPGYVVRHARVTVEYFDKEGEKHRIKLKGYNSIVVQHEIDHTNGIMFYDRIN 189 >gi|321463123|gb|EFX74141.1| hypothetical protein DAPPUDRAFT_307445 [Daphnia pulex] Length = 234 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 17/162 (10%) Query: 8 IFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP LR S + E + I N++ + VM IG++A QIG+ R+++I++ Sbjct: 49 QLGDPTLRLKSSEVVLDELSSERIKNILLVLRGVMKHYKAIGISAPQIGIPLRIIMIEIP 108 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 D VFINP + +++ E C S+ A V R + Sbjct: 109 DSLVEKFGPETCKTREIVPTPFKVFINPVMQVKDFKKTLFPEACESLKGISAIVPRYRAV 168 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V+ + + A G A +QHE+DHL+G ++ D + Sbjct: 169 HVKGYEYDGSPTEWDATGWAARIVQHEMDHLDGQIYTDIMES 210 >gi|313884730|ref|ZP_07818486.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312620098|gb|EFR31531.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 22/173 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLA 48 K V DPIL R + + ++++ L +M E G+GLA Sbjct: 3 TMKDFVPEDDPILHREAAEVSFPLSAEDRQLALDMRQFLINSQNDEVAEKYDLRAGVGLA 62 Query: 49 AVQIGVLYRLVVID--LQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPD 99 A Q+G ++ + D + ++ I SV + + Sbjct: 63 APQLGYDKKIFCVYLEAYDEENDSTEVMMDEIVINPRIIKHSVKKAALKDGEGCLSVNRE 122 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R +T+RY + + I A QHE DHL GI+F +H+S Sbjct: 123 VPGLVPRPKRVTLRYYNLDGDELEIKLTDYEAMVFQHEFDHLKGIMFYEHISD 175 >gi|291320109|ref|YP_003515367.1| formylmethionine deformylase [Mycoplasma agalactiae] gi|290752438|emb|CBH40409.1| Formylmethionine deformylase [Mycoplasma agalactiae] Length = 187 Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 22/173 (12%) Query: 1 MVKK--PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTD--------GIGLAA 49 M LV P +LR+ S + + S+ + L M+ + + G+G+AA Sbjct: 1 MSVYNVDLVKLPKKVLRKKSENVPIPLTSEDIELAKTMIYHIDDSQKQGSKFQAGVGVAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRA 102 VQ G+L R+ I++ + + + S + + Sbjct: 61 VQYGILKRVFYINITEDMVDDKSQILRDVFFNPTIIAMSNSKIALSQGEGCLSVRRNIPN 120 Query: 103 DV----KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + + G A QHELDHL G LFID + Sbjct: 121 QSGLVYRHKRIVIEAYSYFEKKIKRYDLSGYPAIVAQHELDHLEGKLFIDRID 173 >gi|322784370|gb|EFZ11341.1| hypothetical protein SINV_03231 [Solenopsis invicta] Length = 239 Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + IE +D +I ++ VM + D GL+ QIG+ +++ I+ Sbjct: 52 QVGDPVLRGRTMKIEPEVIRMADFQKVIKRLINVMRAYDAYGLSGPQIGLPWQIFAIECT 111 Query: 65 D--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + +FINP++ E C SI Y A V R+ + Sbjct: 112 EKTMKGVEESVRKAHEMNVVPMTIFINPELKVIDYTPITLYEECASIQGYSAAVPRAYEV 171 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 172 EITALNASAEQFTWRARGWSARIAQHEYDHLQGKLYIEKMD 212 >gi|328868869|gb|EGG17247.1| hypothetical protein DFA_08237 [Dictyostelium fasciculatum] Length = 201 Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 19/169 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK----INSDIMNLIDNMLEV---------------MYS 41 M+ K ++ + +L++V++P K + L+D M +V Y Sbjct: 1 MISKNILKIGNSLLKQVAQPWTKEELKDTKRVEKLLDLMDDVLIPSLQSAQPIKRNSNYQ 60 Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 G + G+ + R + +++ E CLS+P Y Sbjct: 61 ITSGGPVFGKTGIAGSSKNLFNLTKYKRSMQTPLVTTPKKITANNTIDVWESCLSVPSYY 120 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V R+ + + D + I ADGL++ CLQHE DHL G +F + L Sbjct: 121 GRVTRARKCIINFWDITGTPRSIEADGLISACLQHENDHLLGRVFFERL 169 >gi|330470685|ref|YP_004408428.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813656|gb|AEB47828.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 504 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +LR+ +RP + ++ + + + + E+ G+G+AA Q+ + Sbjct: 332 ILQRGADLLRQPARPFDLPREARAAREVIDRLTDALARLDELHPFAKGVGIAAPQLEIGR 391 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 VI D P+V +NP+++ + D EGCLS D+R V R + V + Sbjct: 392 AAAVIRPPD--RTAEPLVLLNPRVVDAAPDTDEQYEGCLSFFDHRGLVPRPLRLDVEHAQ 449 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + I + +A + HE+DHL G L++D ++ Sbjct: 450 LDGRRVITSFEFGMARLVAHEIDHLEGRLYVDRMAP 485 >gi|223984418|ref|ZP_03634556.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] gi|223963613|gb|EEF67987.1| hypothetical protein HOLDEFILI_01850 [Holdemania filiformis DSM 12042] Length = 185 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 21/168 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52 +V D LR S P+ ++ N + +L E +G+AA+QI Sbjct: 4 IVKDSDAHLRDKSAPVSLPLSEADKNTLMELLTYVRESTDPELAEAKNLRPAVGIAAIQI 63 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105 G+ +L+ + + + NP+ + SV + + D+ V Sbjct: 64 GIPKQLLAVVVDEEDKNGNPIHYEYALANAKIVSQSVQNAYLKTGEGCLSVLDDHPGYVI 123 Query: 106 RSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 RSA I V+ D + A G +A LQHE+DH +GILF D ++ Sbjct: 124 RSARIKVKGYDMLQDREVTFRASGYVAIVLQHEIDHFSGILFYDRINP 171 >gi|194396894|ref|YP_002038089.1| peptide deformylase [Streptococcus pneumoniae G54] gi|238690834|sp|B5E5U9|DEF_STRP4 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|194356561|gb|ACF55009.1| peptide deformylase [Streptococcus pneumoniae G54] Length = 203 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 24/171 (14%) Query: 5 PLVIFPDPILRRVSRPIEK--------INSDIMNLIDN-----MLEVMYSTDGIGLAAVQ 51 ++ +P LR ++ + + +M + + M E M G+GLAA Q Sbjct: 18 DIIREGNPTLRAIAEKVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDY 100 + + R++ + +++ + SV + + Sbjct: 78 LDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEXCLSVDRNV 137 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 138 PGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRIN 188 >gi|294669089|ref|ZP_06734175.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309081|gb|EFE50324.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 76 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 41/66 (62%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +PD L V++P+EKI+ I LI +M + MY GIGLAA Q+ V R+VV Sbjct: 1 MALLNILQYPDDRLHTVAKPVEKIDERIKTLITDMFDTMYEARGIGLAATQVDVHERVVV 60 Query: 61 IDLQDH 66 +DL + Sbjct: 61 MDLSEE 66 >gi|313678726|ref|YP_004056466.1| peptide deformylase [Mycoplasma bovis PG45] gi|312950135|gb|ADR24730.1| peptide deformylase [Mycoplasma bovis PG45] Length = 186 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 20/168 (11%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML--------EVMYSTDGIGLAAVQIGVL 55 LV P +LR+ S + ++++ + L + M+ E G+G+AAVQ GVL Sbjct: 7 ELVKLPKKVLRQKSVNVPIPLSNEDIELAEKMIYHIDDSQKEGSKFQAGVGVAAVQYGVL 66 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDY-----------RADV 104 R+ I++ + + S + A Sbjct: 67 KRVFYINVTEDMVDDKKYALRDVFFNPVVIAKSESKIALSQGEGCLSVGRNIKNQSGAVY 126 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + Y + + A QHELDHL+G LFID + Sbjct: 127 RHKRIVIEAYSYFEKKVKRYDLKDYPAIVAQHELDHLDGKLFIDRIDP 174 >gi|316983220|pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus Mutans Ua159 Length = 238 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + +N D + L + ML E M G+GLAA Q Sbjct: 52 DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 111 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 + + R++ + NP + + Sbjct: 112 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGXLSVDRV 171 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ Sbjct: 172 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 223 >gi|152991786|ref|YP_001357507.1| hypothetical protein SUN_0190 [Sulfurovum sp. NBC37-1] gi|151423647|dbj|BAF71150.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 273 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 7/159 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + LVI+PD + S + N + +++++M + M + D +AA+QI Y +++I Sbjct: 1 MVQKLVIYPDDRMNCTSTDVRSFNQTLWDVLEDMRDTMLAHDIKAMAAMQIAYPYNIILI 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + I ++D +E + PD + R I + Y D N Q Sbjct: 61 KEGEE------YHEYINPRIIKNEDLFDSEESSIHYPDVTVTIPRYGKIKLVYEDRNGQV 114 Query: 122 QIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMIT 159 + LA LQ ++D G +D + + R+ I Sbjct: 115 HYEDIEDRELAATLQRKIDITFGGNILDKVDKNTREKIL 153 >gi|328675640|gb|AEB28315.1| Peptide deformylase [Francisella cf. novicida 3523] Length = 204 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ +I S +I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 16 NQVLYQKCKPVSEIKSVEIQNIITEMYEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D + S + ++ + R + I + + + Sbjct: 75 YPFDFGSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 I D + A QHE +HL G +++D Sbjct: 135 IIGKLDSIAAVIFQHEFNHLLGSVYVD 161 >gi|24378660|ref|NP_720615.1| peptide deformylase [Streptococcus mutans UA159] gi|39930891|sp|Q8DWC2|DEF_STRMU RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide deformylase [Streptococcus mutans UA159] Length = 204 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + +N D + L + ML E M G+GLAA Q Sbjct: 18 DIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 + + R++ + NP + + Sbjct: 78 LDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 189 >gi|89255883|ref|YP_513245.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115314370|ref|YP_763093.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|254367244|ref|ZP_04983272.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] gi|290953373|ref|ZP_06557994.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|295313377|ref|ZP_06803985.1| peptide deformylase [Francisella tularensis subsp. holarctica URFT1] gi|89143714|emb|CAJ78913.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS] gi|115129269|gb|ABI82456.1| peptide deformylase [Francisella tularensis subsp. holarctica OSU18] gi|134253062|gb|EBA52156.1| peptide deformylase [Francisella tularensis subsp. holarctica 257] Length = 211 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%) Query: 1 MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47 M+ + + + D +L + +P+ I N++I N+I M E M +GIGL Sbjct: 1 MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59 Query: 48 AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 AA QIG Y++ +I + S + ++ + Sbjct: 60 AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R + I + + + D + A QHE +HL G +++D Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|156501866|ref|YP_001427931.1| peptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009647|ref|ZP_02274578.1| peptide deformylase [Francisella tularensis subsp. holarctica FSC200] gi|254368721|ref|ZP_04984734.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] gi|156252469|gb|ABU60975.1| polypeptide deformylase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121642|gb|EDO65812.1| hypothetical protein FTAG_00519 [Francisella tularensis subsp. holarctica FSC022] Length = 210 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 81 YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 ITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|169827255|ref|YP_001697413.1| peptide deformylase [Lysinibacillus sphaericus C3-41] gi|168991743|gb|ACA39283.1| Peptide deformylase [Lysinibacillus sphaericus C3-41] Length = 192 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 15/154 (9%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQIGVLYRLVV 60 LR+ ++ + + + +++ +ML+ G GL+A QIGV R+ Sbjct: 23 LRKQTQDVAIPVPLEDRHILFSMLQYLKNSQDPILTKKYKLRPGSGLSANQIGVDKRMFA 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118 + +DH + M + + + + V R I V+ + Sbjct: 83 VLFEDHDQKPEMMFINPKVMSHSLNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYTID 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 143 GQEFILSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|322392208|ref|ZP_08065669.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144743|gb|EFX40143.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 203 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 24/173 (13%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAA 49 K ++ +P LR ++ + ++ + L + ML E M G+GLAA Sbjct: 16 MKDIIREGNPTLRALAEEVSFPLSDQEIILGEKMLQFLKNSQDPVTAEKMGLRGGVGLAA 75 Query: 50 VQIGVLYRLVVI----DLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIP 98 Q+ + R++ + +++ SV + Sbjct: 76 PQLDISKRIIAVLVPNIVEEGETPTEAYSMQAVMYNPKIVSHSVQDAALAEGEGCLSVDR 135 Query: 99 DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y D + + I G + +QHE+DH NG++F D ++ Sbjct: 136 EVPGYVIRHARVTVEYFDKDGEKHRIKLKGYNSIVVQHEIDHTNGVMFYDRIN 188 >gi|241667120|ref|ZP_04754698.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875674|ref|ZP_05248384.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841695|gb|EET20109.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 201 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ----- 64 + +L + +P+ I +S+I N+I M E M +GIGLAA QIG +++ +I+ Sbjct: 13 NQVLYQKCKPVTDIQSSEIQNIIAEMREKMQG-NGIGLAANQIGYPHQIFMIEFDSSNAR 71 Query: 65 ---DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + + ++ R + I + + + Sbjct: 72 YPLNFDSVPFQVFINPKITKASEKRVGFWHGCLSALGGKRGKLATYKEIEYEAYNQHGKK 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 132 ITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|54113563|gb|AAV29415.1| NT02FT1681 [synthetic construct] Length = 211 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%) Query: 1 MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47 M+ + + + D +L + +P+ I N++I N+I M E M +GIGL Sbjct: 1 MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59 Query: 48 AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 AA QIG Y++ +I + S + ++ + Sbjct: 60 AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R + I + + + D + A QHE +HL G +++D Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|255027127|ref|ZP_05299113.1| peptide deformylase [Listeria monocytogenes FSL J2-003] Length = 131 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 43 DGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPD 99 G+G+AA Q+ V R + I + D R V NPKI + S + + + Sbjct: 5 GGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDRE 64 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 65 VPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 118 >gi|328783477|ref|XP_623373.2| PREDICTED: hypothetical protein LOC409613 isoform 2 [Apis mellifera] Length = 328 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 16/152 (10%) Query: 30 NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD---- 85 ++D++ E++ D +GLAA QIG+ ++L V+++ + + IT Sbjct: 172 QILDHLYELLKKNDTVGLAAPQIGLPWQLFVVEMTEESIEHIHPYIRKCYGITPHPLTYF 231 Query: 86 ----------DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + V+ E C SI Y A+V R + + ++ + + A+G LA + Sbjct: 232 INPKMNIINSEEVVHFETCASIDCYYAEVPRPKEVQIEALNKFGESFSMKAEGWLARIIH 291 Query: 136 HELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 HE+DHL G L+ D + + K K+ + Sbjct: 292 HEMDHLKGHLYTDRMFPFSFN--YGKWEKIDK 321 >gi|134302514|ref|YP_001122484.1| peptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|254370075|ref|ZP_04986081.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874370|ref|ZP_05247080.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|134050291|gb|ABO47362.1| polypeptide deformylase [Francisella tularensis subsp. tularensis WY96-3418] gi|151568319|gb|EDN33973.1| hypothetical protein FTBG_01170 [Francisella tularensis subsp. tularensis FSC033] gi|254840369|gb|EET18805.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158706|gb|ADA78097.1| peptide deformylase [Francisella tularensis subsp. tularensis NE061598] Length = 210 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ I N++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 22 NKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 81 YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 ITGKLDSIAAIIFQHEFNHLLGSVYVD 167 >gi|56707552|ref|YP_169448.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670023|ref|YP_666580.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] gi|224456620|ref|ZP_03665093.1| peptide deformylase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604044|emb|CAG45036.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320356|emb|CAL08419.1| peptide deformylase [Francisella tularensis subsp. tularensis FSC198] Length = 211 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%) Query: 1 MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47 M+ + + + D +L + +P+ I N++I N+I M E M +GIGL Sbjct: 1 MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQNAEIQNIITEMHEKMQG-NGIGL 59 Query: 48 AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 AA QIG Y++ +I + S + ++ + Sbjct: 60 AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R + I + + + D + A QHE +HL G +++D Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAIIFQHEFNHLLGSVYVD 168 >gi|290579649|ref|YP_003484041.1| putative polypeptide deformylase [Streptococcus mutans NN2025] gi|254996548|dbj|BAH87149.1| putative polypeptide deformylase [Streptococcus mutans NN2025] Length = 204 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 25/172 (14%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 ++ P LR V++ + ++ D + L + ML E M G+GLAA Q Sbjct: 18 DIIREGHPTLRAVAQDVTFPLSEDDIILGEKMLQFLKNSQDPVTAEKMELRGGVGLAAPQ 77 Query: 52 IGVLYRLVVI-DLQDHAHRKNPMVFINPKIITFSDDFS-----------VYQEGCLSIPD 99 + + R++ + NP + + Sbjct: 78 LDISKRIIAVLIPNPEDEDGNPPKEAYALKEIMYNPRIIAHSVQDAALADGEGCLSVDRV 137 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + +T+ Y D N+ + + G + +QHE+DH NGI+F D ++ Sbjct: 138 VEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRIN 189 >gi|159040050|ref|YP_001539303.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918885|gb|ABW00313.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 506 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 ++ +LR+ +RP + + + + + E+ + G+G+AA Q+G+ Sbjct: 334 ILQHGADLLRQPTRPFDLPREDRAARDVVDRLTATLFRLDELHPFSKGVGIAAPQLGIGR 393 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+ D P+V +NP+++ + D EGCLS D R V R I V + Sbjct: 394 AAAVVRPPD--LSGEPVVLLNPRVVDAAPDTDEQYEGCLSFFDQRGLVPRPLRIDVEHTH 451 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 452 IDGSRVITSYEYGMARLVAHEIDHLEGRLYVDRMAP 487 >gi|254373927|ref|ZP_04989409.1| polypeptide deformylase [Francisella novicida GA99-3548] gi|151571647|gb|EDN37301.1| polypeptide deformylase [Francisella novicida GA99-3548] Length = 210 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIITEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 81 YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 ITAKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|307299459|ref|ZP_07579259.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914858|gb|EFN45245.1| formylmethionine deformylase [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 15/177 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-----IMNLIDNMLEVMYSTD-GIGLAAVQIGV 54 M+ +++ +P+LR S P+ S I+ L + E G G++A QIG+ Sbjct: 1 MMTCEVLLLGNPLLRETSSPVSDFRSQETIGQIVMLKQALDEFRKENGFGRGISAPQIGI 60 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 L R+V ++ + V NP+I+ S + C+S P ++RS + V Y Sbjct: 61 LKRIVALN-----LGQGSFVIANPRIVDRSRATFTMWDDCMSFPHLLIRLERSLSVDVVY 115 Query: 115 MDCNAQHQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D + LQHE+DHL+GIL IDH K + + + R+ Sbjct: 116 EDERGIEYEWKGVDQARSELLQHEIDHLDGILAIDHALDAKSIIYRSEYE---RNRE 169 >gi|219130004|ref|XP_002185165.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] gi|217403344|gb|EEC43297.1| formylmethionine deformylase [Phaeodactylum tricornutum CCAP 1055/1] Length = 160 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%) Query: 8 IFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 +PDPILRR ++P++ + + S +GLAA Q GV R+V + + Sbjct: 3 RWPDPILRRPAQPVDAHWFGTGTLQKACALLRATSVSEKAVGLAAQQCGVDARIVYLQPE 62 Query: 65 DHAHRKNPMVFINP--------------KIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + N F + D S + + P + A V R +++ Sbjct: 63 ERHPLINRRSFQRTAELSEITMINPQIVERSPELDVHSWREHCLVLPPTFDATVLRDSWV 122 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 T+ + D + + + G +A +QHELDH GIL D Sbjct: 123 TIVFRDIHGRPHSVRLRGEMARAVQHELDHDRGILITD 160 >gi|213618841|ref|ZP_03372667.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 103 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 49/70 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRK 70 ID+ ++ + Sbjct: 61 IDVSENRDER 70 >gi|328676563|gb|AEB27433.1| Peptide deformylase [Francisella cf. novicida Fx1] Length = 204 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 16 NKVLYQKCKPVADIQSAEIQNIITEMHEKMQC-NGIGLAANQIGYPYQIFMIEFDSSNAR 74 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 75 YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 134 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 I + + A QHE +HL G +++D Sbjct: 135 IIGKLESIAAVIFQHEFNHLLGSVYVD 161 >gi|293400829|ref|ZP_06644974.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305855|gb|EFE47099.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 185 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 17/163 (10%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQI 52 +V DPI+R S + ++ + L+ +ML E +G+AA+Q+ Sbjct: 8 IVKDSDPIVREKSVTVPIPMHEEDKELLMDMLQYVRDSQDSELAEKQNLRPAVGIAAIQL 67 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD----VKRSA 108 G+ +++ + + NPKII+ S + + G + + + Sbjct: 68 GIPKKMLAVVVPKDEEEDYEFALANPKIISESIQKAYLKNGEGCLSVEEEHEGIVPRAAR 127 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + +I A G LA LQHE+DH NG LF DH++ Sbjct: 128 IKVKGFDLLRNEEIVISASGYLAIVLQHEMDHFNGTLFYDHIN 170 >gi|253581454|ref|ZP_04858679.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] gi|251836524|gb|EES65059.1| peptide deformylase 1 [Fusobacterium varium ATCC 27725] Length = 161 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55 +KK +++ + L ++S P++K +I ++ N+ + G +AA QIGV Sbjct: 1 MKKEILLLGNEELYQISEPLKKDEIENIKFIVQNLHDTLLDFREKYHAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P++FINP + D+ + C+S P+ VKR ++Y+ Sbjct: 61 KRLLYMFIDK------PVIFINPVLEFPDDEMMEVLDDCMSFPNLLVKVKRYKRCRIKYL 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + + Q + +G LA LQHE DHL+GIL K +I K Sbjct: 115 DMDWKEQEMSLEGDLAELLQHEYDHLDGILATMRAIDNKSFVIKK 159 >gi|307721460|ref|YP_003892600.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] gi|306979553|gb|ADN09588.1| formylmethionine deformylase [Sulfurimonas autotrophica DSM 16294] Length = 272 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 5/150 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P P+ + + + + LI+++ + + + L+A QIG Y +V++ Sbjct: 1 MVRTIIQYPTPLSVEYATDVRIFDETLFALIEDLKDTINENNLDALSAYQIGSYYNVVIV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + + + E PD A+++R I+V Y D N Sbjct: 61 K-----DDSGEFIEMINPRLISHSGTIITDEQTAYYPDKSAEIQRYDKISVVYQDRNGND 115 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + A G + +Q ++D+ G F+ +S Sbjct: 116 KSMQASGEFSIRIQRKIDYTFGATFVQKMS 145 >gi|319776853|ref|YP_004136504.1| peptide deformylase [Mycoplasma fermentans M64] gi|318037928|gb|ADV34127.1| Peptide deformylase [Mycoplasma fermentans M64] Length = 189 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G Sbjct: 6 KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 65 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103 + R+ I++ + + +I + E L +I + Sbjct: 66 IPKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGY 125 Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I + + + A QHE DHL G LFID +++ Sbjct: 126 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 175 >gi|254372465|ref|ZP_04987954.1| hypothetical protein FTCG_00025 [Francisella tularensis subsp. novicida GA99-3549] gi|151570192|gb|EDN35846.1| hypothetical protein FTCG_00025 [Francisella novicida GA99-3549] Length = 210 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI-------- 61 + +L + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 22 NKVLYQKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 80 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 81 YPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEK 140 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 141 ITGKLDSIAAVIFQHEFNHLLGSVYVD 167 >gi|257468433|ref|ZP_05632527.1| hypothetical protein FulcA4_03769 [Fusobacterium ulcerans ATCC 49185] gi|317062699|ref|ZP_07927184.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] gi|313688375|gb|EFS25210.1| formylmethionine deformylase [Fusobacterium ulcerans ATCC 49185] Length = 159 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 82/165 (49%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55 +K+ +++ + L ++S P++ + + +++ ++ + G +AA QIGV Sbjct: 1 MKREILLLGNEELYQISEPVKPDEIETLKSVVQDLHDTLMDFREKYHAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + ++ + C+S P+ V R ++Y+ Sbjct: 61 KRLLYMFIDK------PVVFINPVLEFPDNEMMEVLDDCMSFPNLLVKVMRHKRCRIKYL 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D + + Q++ +G L+ LQHE DHL+GIL K +I K Sbjct: 115 DMDWKEQVMSLEGDLSELLQHEFDHLDGILATMRAIDNKSLVIKK 159 >gi|332024895|gb|EGI65083.1| Peptide deformylase, mitochondrial [Acromyrmex echinatior] Length = 240 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + IE +D +I +++ VM + G++ QIG+ +++ I+ Sbjct: 52 QVGDPVLRGHAMKIEPEVIRMADFQKVITHLINVMRAYKSYGISGPQIGLPWQIFAIECT 111 Query: 65 DH--------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + + +FINP++ EGC SI Y A V R+ + Sbjct: 112 EEIMEGVEETVKKTHEMNIIPMTIFINPELKVMDYTPITLYEGCESIRGYSAAVPRAYEV 171 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 ++ ++ +A+ A G A QHE DHL G L+I+ + Sbjct: 172 EIKALNASAEQFTWRACGWSARIAQHEYDHLQGKLYIEKMD 212 >gi|213428282|ref|ZP_03361032.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 115 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 49/70 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRK 70 ID+ ++ + Sbjct: 61 IDVSENRDER 70 >gi|308189670|ref|YP_003922601.1| peptide deformylase [Mycoplasma fermentans JER] gi|307624412|gb|ADN68717.1| peptide deformylase [Mycoplasma fermentans JER] Length = 189 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G Sbjct: 6 KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 65 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103 + R+ I++ + + +I E L +I + Sbjct: 66 IPKRMFYININNETINGAKIEDFRDVLINPKVLAISEYEVSLPGEGCLSVGDNIKNQEGY 125 Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I + + + A QHE DHL G LFID +++ Sbjct: 126 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 175 >gi|159026645|emb|CAO86579.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 181 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%) Query: 1 MV-KKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + +PIL++ + I+ + +SD NLID+++ + + G+G+AA Q+ RL Sbjct: 13 MTQVLTITQLGNPILQQKAPEIDNLLDSDCQNLIDSLITTVQAAHGVGIAAPQVARSLRL 72 Query: 59 VVI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 ++ A +P INP+I+ S++ EGCLS+P++R V R +I V Sbjct: 73 FIVASGPNPRYPDAPIMSPTAMINPRILQVSEEMVKGWEGCLSVPNWRGFVPRHQWIEVS 132 Query: 114 YMDCNAQHQIIYADGLLATC 133 Y N + +A Sbjct: 133 YYGRNGREIRQIFRDFVARI 152 >gi|158320246|ref|YP_001512753.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] gi|158140445|gb|ABW18757.1| formylmethionine deformylase [Alkaliphilus oremlandii OhILAs] Length = 164 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 13/169 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-----SDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 + + ++ +P L S + + + + +L D +++ G +AA QIG+ Sbjct: 1 MVREILKLGNPQLYETSEEVVEADIAFLSEWVQDLHDTLMDYRERYGAGRAVAAPQIGIK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + P +FINP + D+ + C+S P V+R + Y Sbjct: 61 KRLLYMF------TDQPYIFINPVMSFPEDEKYTLLDDCMSFPGLIVKVERYKRAEISYF 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + Q +Y G L+ LQHE DHL GIL K + ++M + Sbjct: 115 DKDFNPQKMYLKGDLSELLQHEYDHLEGILATMRAVDNK-SLYLEQMKR 162 >gi|118497100|ref|YP_898150.1| peptide deformylase [Francisella tularensis subsp. novicida U112] gi|208778893|ref|ZP_03246239.1| polypeptide deformylase [Francisella novicida FTG] gi|118423006|gb|ABK89396.1| peptide deformylase [Francisella novicida U112] gi|208744693|gb|EDZ90991.1| polypeptide deformylase [Francisella novicida FTG] Length = 211 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 22/169 (13%) Query: 1 MVKKPL---------VIFPD---PILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGL 47 M+ + + + D +L + +P+ I +++I N+I M E M +GIGL Sbjct: 1 MMVVNIKMQQMKSQFIQYNDSNNKVLYQKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGL 59 Query: 48 AAVQIGVLYRLVVI--------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 AA QIG Y++ +I + S + ++ + Sbjct: 60 AANQIGYPYQIFMIEFDSSNARYPFSFDSVPYQVFINPKITKASKQRVSFWHGCLSALGE 119 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 R + I + + + D + A QHE +HL G +++D Sbjct: 120 KRGKLATYKEIEYEAYNQHGEKITGKLDSIAAVIFQHEFNHLLGSVYVD 168 >gi|330686209|gb|EGG97823.1| peptide deformylase [Staphylococcus epidermidis VCU121] Length = 164 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 33 DNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-- 90 D++ + G+GLAA QI V R++ + L D + K+ + + Y Sbjct: 28 DDIAKKYGLRSGVGLAAPQINVSKRMIAVYLPDDGNGKSYDYMLVNPKVMSYSVQEAYLP 87 Query: 91 --QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + + V R +T++ D + + G A QHE+DHLNGI+F D Sbjct: 88 TGEGCLSVDENIPGLVHRHNRVTIKAQDIDGNDVKLRLKGYPAIIFQHEIDHLNGIMFYD 147 Query: 149 HLSR 152 H+ Sbjct: 148 HIDD 151 >gi|302340674|ref|YP_003805880.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] gi|301637859|gb|ADK83286.1| formylmethionine deformylase [Spirochaeta smaragdinae DSM 11293] Length = 175 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%) Query: 6 LVIFPDPILRRVSRPI-----EKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 +++ DP LR+ + ++ + L + G +AA QIG+ R++ Sbjct: 5 ILLLGDPRLRKKATTASLPADTQLRREDERLQKALEAFRAEKGFGRAIAAPQIGISKRVI 64 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L NP I + S++ + + C+S PD V+R I++ Y D Sbjct: 65 ALHLDGKTFS-----IFNPVITSHSEETFLLWDDCMSFPDLLVKVRRYTSISIVYQDALG 119 Query: 120 -QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 +H+ D L+ LQHE+DHL+GIL ID K Sbjct: 120 REHRWEKPDRSLSELLQHEIDHLDGILAIDRAIDRK 155 >gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii] gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii] Length = 250 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Query: 42 TDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 DG+GLAA Q+GV RL+V + N + +NP+I+ + +EGCLS P Sbjct: 96 DDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIY 155 Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLL-ATCLQHELDHLNGILFIDHLSRLKRDMITK 160 DV+RS I V+ +D Q + A QHE DHL G+LF D + + + Sbjct: 156 GDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRP 215 Query: 161 KMSKL 165 ++ L Sbjct: 216 ELVAL 220 >gi|213026865|ref|ZP_03341312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 98 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 49/70 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++V Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60 Query: 61 IDLQDHAHRK 70 ID+ ++ + Sbjct: 61 IDVSENRDER 70 >gi|299538334|ref|ZP_07051617.1| peptide deformylase [Lysinibacillus fusiformis ZC1] gi|298725921|gb|EFI66513.1| peptide deformylase [Lysinibacillus fusiformis ZC1] Length = 191 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAAVQIGVLYRLV 59 ILR+ ++ + + + N + ML+ G GL+A QIGV R+ Sbjct: 22 ILRKQTQEVPIPVTTVDRNTLLAMLQYLKNSQNPTLAKKYKLRPGSGLSANQIGVNKRMF 81 Query: 60 VIDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D NP + + + + + + V R I V+ D + Sbjct: 82 AVLFDDQEMMLINPKIISHSLNMIYLPEG---EGCLSVNRPVPGFVPRYERIKVKAYDID 138 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I+ G A +QHE+DHLNGI+F D +++ Sbjct: 139 GHESIVQLQGYGAIVVQHEIDHLNGIMFYDRINKE 173 >gi|329576776|gb|EGG58269.1| peptide deformylase [Enterococcus faecalis TX1467] Length = 131 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 4/116 (3%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94 M E M + DGIGLAA QIG ++ VI++ + + R INP II + C Sbjct: 1 MYETMLAHDGIGLAAPQIGKNLQMAVIEIDEESGR---FELINPVIIEKKGTSIDVEG-C 56 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 LSIP+ V+R+ +TVRY D + + A G LA QHE+DHLNG LFID + Sbjct: 57 LSIPETYGTVERADEVTVRYFDREGEEMEVTAYGYLARAFQHEIDHLNGELFIDKM 112 >gi|15596319|ref|NP_249813.1| peptide deformylase [Pseudomonas aeruginosa PAO1] gi|9947041|gb|AAG04511.1|AE004542_7 probable peptide deformylase [Pseudomonas aeruginosa PAO1] Length = 147 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + ++ D L R+++P+ + ++ LID+M E M+ G+GLAA QIGV +L Sbjct: 1 MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQL 60 Query: 59 VVIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 V+ A P + +NP++ D+ EGCLS+P R V R I + Sbjct: 61 VIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQ 120 Query: 114 YMDCNAQHQIIYADGLL 130 +D + G + Sbjct: 121 GLDPQDSRSTAASKGSM 137 >gi|284006808|emb|CBA72075.1| polypeptide deformylase [Arsenophonus nasoniae] Length = 219 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 9/134 (6%) Query: 46 GLAAVQIGVLYRLVVIDLQDHAHRKNPMV---------FINPKIITFSDDFSVYQEGCLS 96 GLAA Q+G +++V+I + A K V + EGC S Sbjct: 86 GLAAPQVGYPFKIVIIQIPPEAKEKRKDVYDTLSPTILINPVYTPILNAGQIKDWEGCFS 145 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 IP+ +V R I + +A G LA +QHE+DHLNG L+ID+L R Sbjct: 146 IPNKMGEVYRYNEIYYEAYTLEGKKISAHAKGFLARLIQHEIDHLNGKLYIDYLCDDCRF 205 Query: 157 MITKKMSKLVQLRD 170 + T + ++++ + Sbjct: 206 VSTTEALNIMKIEE 219 >gi|213425785|ref|ZP_03358535.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213618713|ref|ZP_03372539.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 53 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 35/49 (71%) Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 1 NPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 49 >gi|238809638|dbj|BAH69428.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 195 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST----------DGIGLAAVQIG 53 LV P+ ILR+ S+ ++ ++ + L M+ + + G+G+AA+Q G Sbjct: 12 KLVELPEKILRKKSKEVKIPLSKEDEELAKKMIYHIDESQKEDSKLGFRPGVGVAAIQYG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL----------SIPDYRAD 103 + R+ I++ + + +I + E L +I + Sbjct: 72 IPKRMFYININNETINGAKIEDFRDVLINPKVLATSEYEVSLPGEGCLSVGDNIKNQEGY 131 Query: 104 VKRSAFITVRYMDCN-AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V R I + + + A QHE DHL G LFID +++ Sbjct: 132 VYRKKRIVLEAYSYFEKKVKHYDLVDYAAIVAQHEFDHLEGKLFIDRINK 181 >gi|294660577|ref|NP_853423.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|298286800|sp|Q7NAK8|DEF_MYCGA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|284812240|gb|AAP56991.2| peptide deformylase [Mycoplasma gallisepticum str. R(low)] gi|284930920|gb|ADC30859.1| peptide deformylase [Mycoplasma gallisepticum str. R(high)] Length = 196 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML E GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110 + R + D +++ + INP+ I S + + + D V RS + Sbjct: 72 LNQRFFYVHFTDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|294669088|ref|ZP_06734174.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309080|gb|EFE50323.1| peptide deformylase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 91 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 57/88 (64%) Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 +IT + + Y+EGCLS+P V R+ +TV +D + + ADGLLA C+QHELD Sbjct: 1 MITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALDEKGEKFTLEADGLLAICIQHELD 60 Query: 140 HLNGILFIDHLSRLKRDMITKKMSKLVQ 167 HL GI+F++HLS+LK+ I K+ K + Sbjct: 61 HLMGIVFVEHLSQLKQGRIKTKLKKRQK 88 >gi|225405389|ref|ZP_03760578.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] gi|225043091|gb|EEG53337.1| hypothetical protein CLOSTASPAR_04609 [Clostridium asparagiforme DSM 15981] Length = 160 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 14/167 (8%) Query: 2 VKKPLVIFPDPILRRVSRPI-EKINSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGVL 55 + K +++ +P L +S + E+ +++ L ++ + M +AA QIGV Sbjct: 1 MIKEILLLGNPALYEISEAVREEELTEMAALERDLHDTMMEFRRIYKAGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ +++ + P++ INP + + + C+S P V R + Y Sbjct: 61 KRVLYMNVGE------PVLLINPVLEFPDGEMMEVMDDCMSFPGLLVKVDRYRRCRIHYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D N Q + + +G L+ LQHE DHL+GIL +KM Sbjct: 115 DRNWQDEEMELEGDLSELLQHEYDHLDGILATMRAKDS--RAFYRKM 159 >gi|167626562|ref|YP_001677062.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596563|gb|ABZ86561.1| peptide deformylase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 201 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 10/147 (6%) Query: 11 DPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 + +L + +P+ I +S+ N+I M E M +GIGLAA QIG Y++ +I+ R Sbjct: 13 NEVLYQRCKPVNDIQSSETQNIIAEMYEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNAR 71 Query: 70 K--------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + S + ++ + R + I + + + Sbjct: 72 YPLSFDSVPFQVFINPKITKASEKRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGKK 131 Query: 122 QIIYADGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 132 ITGKLDSIAAVIFQHEFNHLLGSVYVD 158 >gi|294790517|ref|ZP_06755675.1| peptide deformylase [Scardovia inopinata F0304] gi|294458414|gb|EFG26767.1| peptide deformylase [Scardovia inopinata F0304] Length = 230 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 33/174 (18%) Query: 4 KPLVIFPDPILRRVS-------RPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 P+V +P+LR + +P + L M M + G+GLA QIG+ Sbjct: 29 LPIVQMGEPVLRLKTVAYCGQLKP-----KTLEQLKKVMRRTMLNAPGVGLAGPQIGLGL 83 Query: 57 RLVVIDLQ---------------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95 L V++ + INP D + + EGCL Sbjct: 84 SLAVVEDHIRDLSDDEQAEADEAAASADPRGIADFPFHIIINPWYEPMDDASASFFEGCL 143 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 S Y+A KR I + D +A A QHE DHL G ++ID Sbjct: 144 SFDGYQAVRKRWLNIKAHWFDEDAVEHEAELHQWPARIFQHETDHLKGEVYIDK 197 >gi|126650157|ref|ZP_01722390.1| peptide deformylase [Bacillus sp. B14905] gi|126593329|gb|EAZ87291.1| peptide deformylase [Bacillus sp. B14905] Length = 192 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 67/154 (43%), Gaps = 15/154 (9%) Query: 14 LRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQIGVLYRLVV 60 LR+ ++ + + + +++ +ML+ + ++ GL+A QIGV R+ Sbjct: 23 LRKQTQDVAIPVPLEDRHILLSMLQYLKNSQDPILIKKYKLRSGSGLSANQIGVDKRMFA 82 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMDCN 118 + ++H + M + + + + V R I V+ + + Sbjct: 83 VLFENHDQKHEMMFINPKVMSHSFNMIYLPEGEGCLSVNRPVHGFVPRYERIKVKAYNID 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Q I+ G + +QHE+DHLNGI+F D +++ Sbjct: 143 GQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINK 176 >gi|284931676|gb|ADC31614.1| peptide deformylase [Mycoplasma gallisepticum str. F] Length = 196 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML E GIG+AA Q+G Sbjct: 12 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110 + R + D +++ + INP+ I S + + + D V RS + Sbjct: 72 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 131 Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 132 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 176 >gi|224065146|ref|XP_002190853.1| PREDICTED: hypothetical protein, partial [Taeniopygia guttata] Length = 131 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 14/118 (11%) Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIIT--------------FSDDFSVYQEGC 94 A Q+GV R+ + + P I EGC Sbjct: 1 APQLGVPLRVFAAEKPPARCARYPPALRQAHRIEPFPLRVLVNPALRILDSRLVTGPEGC 60 Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 SI + A V R + V +D A G A +QHE+DHL+GIL+ID + Sbjct: 61 ASIHGFSAYVPRHWAVHVSGVDELGVPVSWEASGWAARIIQHEMDHLDGILYIDRMEP 118 >gi|260834959|ref|XP_002612477.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] gi|229297854|gb|EEN68486.1| hypothetical protein BRAFLDRAFT_278948 [Branchiostoma floridae] Length = 188 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 17/164 (10%) Query: 6 LVIFPDPILRRVSRPIEKIN---SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V +PILR + ++ N + +++ +++VM +GL+A Q+GV +++ ++ Sbjct: 12 VVPVGNPILRGQALAVDHRNIKSKETQEVLEQLVKVMRKKGAVGLSAPQVGVGLQIIAVE 71 Query: 63 LQDHAHRKNPM--------------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 P +FINPK+ V+ EGC S+P ++A+V R Sbjct: 72 CTRKQLDLVPQEIRKIREMQEFPLKIFINPKLKVTDYSTVVFPEGCESLPGFQANVPRYY 131 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + +D G A LQHE++HL G L+ID + Sbjct: 132 GVNITGLDREGMPVAWQVTGWPARILQHEVEHLRGDLYIDIMDS 175 >gi|260221950|emb|CBA31026.1| hypothetical protein Csp_C26490 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 397 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 42/71 (59%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M P++ +PD L V++P+ +++ I L +MLE MY GIGLAA QI V R++V Sbjct: 29 MALLPILCYPDTRLHTVAKPVSQVDDRIRTLTADMLETMYDAKGIGLAATQIDVHERVIV 88 Query: 61 IDLQDHAHRKN 71 ID+ + + Sbjct: 89 IDVSEDRDQPM 99 >gi|254456880|ref|ZP_05070308.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] gi|207085672|gb|EDZ62956.1| formylmethionine deformylase [Campylobacterales bacterium GD 1] Length = 267 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 6/162 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K + +P + N ++ LI ++ + + LAA QIG ++V+ Sbjct: 1 MVKEITKYPTKPSLEFGANVRFFNDELFALIQDLKDTIEVNSLDALAAFQIGSPLSVIVV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + + + E P A KR IT+ Y D +A Sbjct: 61 KKGGEFLE------LINPRVLKREGSVEPVETTAYFPGMSAKTKRYEKITLMYEDRDATQ 114 Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 + + ADG LA LQ ++D+ G F L + ++ + K+ Sbjct: 115 KFLEADGELAITLQRKVDYTFGSHFRFRLDKDEQKLFDSKLE 156 >gi|68068927|ref|XP_676374.1| formylmethionine deformylase [Plasmodium berghei strain ANKA] gi|56496040|emb|CAH95054.1| formylmethionine deformylase, putative [Plasmodium berghei] Length = 122 Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +VI+P+PILR+ S + + ++ NLI M + MY + GIGL+A Q+ + R++V + Sbjct: 60 LKIVIYPNPILRQKSEEVIYFDDNLKNLIRRMFKTMYESKGIGLSAPQVNINKRIIVWNA 119 Query: 64 QDH 66 Sbjct: 120 LYE 122 >gi|320527454|ref|ZP_08028635.1| peptide deformylase [Solobacterium moorei F0204] gi|320132167|gb|EFW24716.1| peptide deformylase [Solobacterium moorei F0204] Length = 195 Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 21/170 (12%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQI 52 ++ +P++R S + ++ + L+ +ML+ + + +G++A+Q+ Sbjct: 15 IIKDTNPLIREKSELVSLPLSKEDETLLRDMLQYVKDSTDEEKATKLNLRPAVGISAIQV 74 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVK 105 G+ R+ + + N + + + SV + ++R V Sbjct: 75 GIKKRMCAVAFDETDKDGNMVKYEFMLVNPKIVSRSVQPAYLESGEGCLSVENEHRGYVV 134 Query: 106 RSAFITVRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 R+A +T+R D Q I A G +A LQHELDH++GILF DH+++ + Sbjct: 135 RNARVTIRAFDLVQNQDVEIRARGYIAIVLQHELDHMDGILFYDHINKKE 184 >gi|38049247|gb|AAR10418.1| putative peptide deformylase [Enterococcus faecium] Length = 160 Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 34 NMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---Y 90 ++ + G+GL+A QIG+ R+ V L D +K+ INPKII+ S Sbjct: 25 DLSKKYKLRAGVGLSANQIGLNKRMFVAYLTDEKGKKHEYTLINPKIISHSVSMIYLSPS 84 Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + D + V R I V+ + + ++ G + +QHE+DHLNGI+F + + Sbjct: 85 EGCLSVDRDIKGFVPRYERIKVKGFNLEGEEIVLKLKGYSSIVIQHEIDHLNGIMFYERI 144 Query: 151 SRL 153 ++ Sbjct: 145 NKE 147 >gi|184155075|ref|YP_001843415.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|260663619|ref|ZP_05864508.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|238692958|sp|B2GBA3|DEF_LACF3 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|183226419|dbj|BAG26935.1| formylmethionine deformylase [Lactobacillus fermentum IFO 3956] gi|260551845|gb|EEX24960.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 189 Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQIGVLYRLV 59 +LR + + + + L +++E + + GLAA Q+ V ++ Sbjct: 16 VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNVSKQMA 75 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAFITV 112 + + + +F + I SV + D V R IT+ Sbjct: 76 AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|307181864|gb|EFN69304.1| Peptide deformylase, mitochondrial [Camponotus floridanus] Length = 238 Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%) Query: 8 IFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 DP+LR + IE D +I +++ +M S D G++ QIG+ +++ I+ Sbjct: 51 QIGDPVLRGHAMKIEPEVIKLEDFQKVITHLINIMRSYDACGMSGPQIGLPWQIFAIEHT 110 Query: 65 DHAHRK--------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 + +FINP++ + EGC S+ Y A V R+ I Sbjct: 111 MEHMKTSDEVIKKAYEMEVIPVTIFINPELKIIDHTPIILYEGCESVRGYSAAVPRAYEI 170 Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + ++ +A+ G A QHE DHL G L+ID + Sbjct: 171 EITALNASAEQFTWRGRGWSARIAQHEYDHLQGELYIDKMD 211 >gi|295103440|emb|CBL00984.1| N-formylmethionyl-tRNA deformylase [Faecalibacterium prausnitzii SL3/3] Length = 136 Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P++ DP L + S P ++ + +L++ + ++ +G+AA IGVL R++ Sbjct: 1 MIQPIMH--DPLFLAQKSAPATPEDAPVARDLLETL--TAHADGCVGMAANMIGVLKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +D + E + KR I V+Y + Sbjct: 57 AVEAEDGYLVLF-------NPVILKKSGQYEAEEGCLSLEGVRKTKRWQSIKVQYQTMDG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE+DH +GIL Sbjct: 110 KPRIKTFTGWTAQIIQHEIDHCDGILI 136 >gi|255523790|ref|ZP_05390755.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|255512493|gb|EET88768.1| formylmethionine deformylase [Clostridium carboxidivorans P7] Length = 165 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 13/169 (7%) Query: 2 VKKPLVIFPDPILRRVS-----RPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVL 55 + K +++ + L + S ++ I +++L D +++ + G +AA QIGV Sbjct: 1 MLKEILLLGNDALYKKSLLVQKEELDSIKGTVLDLHDTLIDFRKKYNAGRAIAAPQIGVF 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ + + P+VFINP + + + + C+S P+ V R TV Y Sbjct: 61 KRLIYMYIDK------PIVFINPILKFDNKEIMEVMDDCMSFPNLLVKVNRYKECTVMYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 D + + I +G L+ +QHE DHL+GIL K KK SK Sbjct: 115 DIDFIDRTIKFEGNLSELIQHEYDHLDGILATMRAIDNK-SFYLKKQSK 162 >gi|227514799|ref|ZP_03944848.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086847|gb|EEI22159.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 189 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 20/160 (12%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI------------GLAAVQIGVLYRLV 59 +LR + + + + L +++E + + GLAA Q+ + ++ Sbjct: 16 VLRDYAAKVSFPLTEEEQQLAKDLMEYLEISQDEELAEKYGLRAGVGLAAPQVNISKQMA 75 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVY-------QEGCLSIPDYRADVKRSAFITV 112 + + + +F + I SV + D V R IT+ Sbjct: 76 AVLVPSDDEEDDTPIFKDVIINPVIISESVQMGALTEGEGCLSVDRDIAGYVPRHDRITL 135 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 +Y D + + A QHE+DHL+G+LF DH+++ Sbjct: 136 KYQDVQGETHKVRLKHYPAIVCQHEIDHLHGVLFYDHINK 175 >gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma gallisepticum] gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma gallisepticum] Length = 204 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53 LV +P +R V ++ ++ +++++ID ML E GIG+AA Q+G Sbjct: 20 LVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDDNAEKYDIRPGIGIAANQLG 79 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFI 110 + R + D +++ + INP+ I S + + + D V RS + Sbjct: 80 LNQRFFYVHFIDFCQKEHRYLLINPEWIDKSLNKAYLAVGEGCLSVPKDKDGYVIRSETV 139 Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154 ++ D + I A GLLA CLQHE+DHL G + D ++ +K Sbjct: 140 KLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYYDSINMMK 184 >gi|238061746|ref|ZP_04606455.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883557|gb|EEP72385.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 509 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 6 LVIFPDPILRRVSRPIE---------KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 +V +LR+ SR + ++ + + + + E+ + G+G+AA Q+G+ + Sbjct: 337 IVQRGADLLRQPSRQFDLPAEAGVAREVVDRLGSALVRLDELHPFSKGVGIAATQLGLAW 396 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+ D P+V +NP+++ S D EGCLS D+R V RS I V + Sbjct: 397 AAAVVRPPD--RAAEPVVLLNPRVVDSSPDTDEQYEGCLSFFDHRGLVPRSLRIDVEHAQ 454 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + I + +A + HE+DHL G L++D ++ Sbjct: 455 WDGGRLITSFEFAMARLVAHEIDHLEGRLYVDRMTP 490 >gi|119494635|ref|ZP_01624754.1| peptide deformylase [Lyngbya sp. PCC 8106] gi|119452038|gb|EAW33257.1| peptide deformylase [Lyngbya sp. PCC 8106] Length = 143 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 72/125 (57%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + D +LR+ ++ I +++ D LI ML+ MYS DGIGLAA Q+GV +L+VID + Sbjct: 19 IHYLGDRVLRQSAKRISRVDDDTRRLIREMLQTMYSADGIGLAAPQVGVQKQLIVIDCEP 78 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 P++ INP I S + S +QEGCLSIP DV R I V + D + + I Sbjct: 79 DNAATPPLILINPTIKKSSQEISPFQEGCLSIPGVYMDVTRPEVIEVSFKDETGRPRTIR 138 Query: 126 ADGLL 130 A+ LL Sbjct: 139 ANELL 143 >gi|88606748|ref|YP_505874.1| peptide deformylase, truncation [Anaplasma phagocytophilum HZ] gi|88597811|gb|ABD43281.1| peptide deformylase, truncated [Anaplasma phagocytophilum HZ] Length = 91 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 37/75 (49%), Positives = 55/75 (73%) Query: 90 YQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 +EGCLS+P+ R V R + ++Y D + + +I+ A GLL+ CLQHE+DHLNG +FI H Sbjct: 10 MEEGCLSVPNQRELVVRPERVVMQYTDLHGKRKILKAQGLLSRCLQHEIDHLNGTVFIKH 69 Query: 150 LSRLKRDMITKKMSK 164 +S+LKRD++ +KM K Sbjct: 70 ISKLKRDLVMQKMRK 84 >gi|290476474|ref|YP_003469379.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175812|emb|CBJ82615.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 62 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 40/60 (66%) Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + V +D + + ++ ++ L+ +QHE+DHLNGI+FID+LS LKR M KK+ K + + Sbjct: 1 MKVEALDRHGKAMVVESEDFLSIVMQHEIDHLNGIVFIDYLSPLKRQMALKKVKKFLSNK 60 >gi|13637693|sp|Q48661|DEF_LACLA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 196 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 6 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 65 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95 +G+L +++ + + + I PK + + Sbjct: 66 LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 125 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 126 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 181 >gi|116511359|ref|YP_808575.1| peptide deformylase [Lactococcus lactis subsp. cremoris SK11] gi|125623399|ref|YP_001031882.1| peptide deformylase [Lactococcus lactis subsp. cremoris MG1363] gi|806487|gb|AAC41454.1| ORF211 [Lactococcus lactis subsp. cremoris] gi|116107013|gb|ABJ72153.1| N-formylmethionyl-tRNA deformylase [Lactococcus lactis subsp. cremoris SK11] gi|124492207|emb|CAL97136.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070146|gb|ADJ59546.1| peptide deformylase [Lactococcus lactis subsp. cremoris NZ9000] Length = 211 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 21 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95 +G+L +++ + + + I PK + + Sbjct: 81 LGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196 >gi|160943037|ref|ZP_02090275.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] gi|158445731|gb|EDP22734.1| hypothetical protein FAEPRAM212_00514 [Faecalibacterium prausnitzii M21/2] Length = 136 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P++ DP L + S P ++ + +L+D + ++ +G+AA IGV R++ Sbjct: 1 MIQPIMH--DPLFLAQKSAPATPEDAPVARDLLDTL--TAHADGCVGMAANMIGVRKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ +D + E + KR I V+Y + Sbjct: 57 AVEAEDGYLVLF-------NPVILKKSGQYEAEEGCLSLEGVRKTKRWQSIKVQYQTMDG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE+DH +GIL Sbjct: 110 KLRIKTFTGWTAQIIQHEIDHCDGILI 136 >gi|159040197|ref|YP_001539450.1| formylmethionine deformylase [Salinispora arenicola CNS-205] gi|157919032|gb|ABW00460.1| formylmethionine deformylase [Salinispora arenicola CNS-205] Length = 187 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 4/152 (2%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLVVI 61 + ++ P +L R ++ + + L +++ M + +GLAA QIGV R+ + Sbjct: 23 VRQVLSAPATVLSRAGGDVDPTAEETVRLAADLVATMRVSPGCVGLAAPQIGVGARVFAV 82 Query: 62 DLQDHAHRKNPM--VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM-DCN 118 D+ HA + ++ + + V +EGC+S+PD DVKR+ + V Sbjct: 83 DVTGHAKAAIVHGAFVLCNAVVVAASRWKVGREGCMSVPDLTGDVKRAGQLVVEGELPAT 142 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + + + A LQHE+DH G+LF+D + Sbjct: 143 GKAVRLVTNAFEARALQHEIDHCAGLLFLDRV 174 >gi|15672542|ref|NP_266716.1| peptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281491026|ref|YP_003353006.1| peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase [Lactococcus lactis subsp. lactis Il1403] gi|281374784|gb|ADA64304.1| Peptide deformylase [Lactococcus lactis subsp. lactis KF147] gi|326406061|gb|ADZ63132.1| peptide deformylase [Lactococcus lactis subsp. lactis CV56] Length = 211 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 29/176 (16%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQ 51 ++ P LR V+ + ++ + + L + ML+ ++++ G+GLAA Q Sbjct: 21 DIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVGLAANQ 80 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY----------------QEGCL 95 +G+L +++ + + + I PK + + Sbjct: 81 LGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGGEGCLS 140 Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + V R A +TV Y + + + I A C+QHE+DH NG++F DH++ Sbjct: 141 VDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHIN 196 >gi|145596629|ref|YP_001160926.1| formylmethionine deformylase [Salinispora tropica CNB-440] gi|145305966|gb|ABP56548.1| formylmethionine deformylase [Salinispora tropica CNB-440] Length = 506 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 11/161 (6%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD--IMNLIDNML-------EVMYSTDGIGLAAVQ 51 M ++ +LR+ +RP + + +D + E+ + G+G+AA Q Sbjct: 329 MRSLGILQHDADLLRQPTRPFDLPREEEVAQQAVDRLTAALVRLDELHPFSKGVGVAAPQ 388 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 +G+ V+ D P+V +NP+++ + D EGCLS D R V R I Sbjct: 389 LGIGRAAAVVRPPD--RGGEPVVLLNPRVVDAAPDSDEQYEGCLSFFDQRGLVPRPLRID 446 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 V + + I + +A + HE+DHL G L++D ++ Sbjct: 447 VEHTHLDGSRVITSYEYAMARLVAHEIDHLEGRLYVDRMAP 487 >gi|156303056|ref|XP_001617464.1| hypothetical protein NEMVEDRAFT_v1g78625 [Nematostella vectensis] gi|156193964|gb|EDO25364.1| predicted protein [Nematostella vectensis] Length = 135 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + P+ + +P+LR+VS I K ++ I +M E MY G+GLAA Q+G+ RL VI Sbjct: 9 MILPIYGYGEPVLRKVSEEITKEYPNLKETIADMFETMYQAYGLGLAAPQVGLPIRLFVI 68 Query: 62 DLQD 65 D + Sbjct: 69 DTEP 72 >gi|320169511|gb|EFW46410.1| polypeptide deformylase [Capsaspora owczarzaki ATCC 30864] Length = 196 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Query: 4 KPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + L+ + LR SR + +S LID M+ M T+G+G+AAVQ+G + Sbjct: 19 RGLLAIGEDSLRLPSRQVSLDELRSSATQALIDRMIATMRRTEGVGIAAVQLGDNRAIAC 78 Query: 61 IDLQ--------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106 I+ V +NP+++ S D EGCLS+P +A V R Sbjct: 79 IEFTAKHLAEATPEMAATHKMEAVPLTVMVNPRVLRASSDLVEGAEGCLSVPGMQAIVFR 138 Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + +D N Q + G A HE+DHL G LF D + R Sbjct: 139 PRHVAIDCLDRNGAPQTLKLSGWSARIAMHEVDHLKGELFTDKMER 184 >gi|118386952|ref|XP_001026593.1| polypeptide deformylase family protein [Tetrahymena thermophila] gi|89308360|gb|EAS06348.1| polypeptide deformylase family protein [Tetrahymena thermophila SB210] Length = 318 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 10/150 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------IDL 63 L P++ + + I N+ + + LAA QIG+ R +V + + Sbjct: 92 LESKCLPVQGFTQTLKSEILNLKYHAEVSGRVNLAANQIGIPKRFIVLAKPDYLYKRVWV 151 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 D+ ++ +NP+I+ E P R R I V+Y++ + Sbjct: 152 NDNLDIQHLHALVNPRILDKDKFMEYDWEQTACFPTVRFRRLRYHHILVQYLNEQMEQVE 211 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRL 153 + +G + Q LDHLNGI+ D + + Sbjct: 212 VEMNGWESRLFQQSLDHLNGIIPFDEVKNM 241 >gi|70934701|ref|XP_738539.1| formylmethionine deformylase [Plasmodium chabaudi chabaudi] gi|56514841|emb|CAH86596.1| formylmethionine deformylase, putative [Plasmodium chabaudi chabaudi] Length = 132 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 40/78 (51%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++P+P+LR+ S + + ++ +L+ M + MY + GIGL+A Q+ + R++V + Sbjct: 18 LKIVMYPNPVLRQKSEEVLYFDDNLKDLVRRMFKTMYESKGIGLSAPQVNISKRIIVWNA 77 Query: 64 QDHAHRKNPMVFINPKII 81 + I Sbjct: 78 LYEKRDEKNERVFINPSI 95 >gi|237757000|ref|ZP_04585457.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690843|gb|EEP59994.1| polypeptide deformylase [Sulfurihydrogenibium yellowstonense SS-5] Length = 121 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 5/121 (4%) Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPM----VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 AA Q+ R +++D H+ N + + ++ I ++ +++EGC+S+PDY + Sbjct: 1 AAPQVNNPIRAIIVDTSKSTHKTNKVSHGLMVLSNPKIVHAEGEIIFREGCMSVPDYTGN 60 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 VKR +I V D N +G A +QHE+DHL G +FI+ + K D+ +K+ Sbjct: 61 VKRFYYIKVEAQDINGNLITFDTEGFEAVVIQHEIDHLEGKVFIEKVVSPK-DIFRRKVY 119 Query: 164 K 164 K Sbjct: 120 K 120 >gi|85860534|ref|YP_462736.1| peptide deformylase [Syntrophus aciditrophicus SB] gi|85723625|gb|ABC78568.1| peptide deformylase [Syntrophus aciditrophicus SB] Length = 189 Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 19/164 (11%) Query: 13 ILRRVSRPIE-----KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 ILR SR + + I L+D LE D +GLAA QIG+ R+V+ + Sbjct: 23 ILRTPSRDLPIPLSREARDQIQTLVDAFLE---RDDALGLAAPQIGINRRIVIFRNKGFD 79 Query: 68 HRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + INP+I + EGCLS P + +V R + VR D + Sbjct: 80 EEGWSKKEKDYDLLINPRITQTRGELVKGAEGCLSCPSIQVEVNRFPEVKVRAFDRHGNR 139 Query: 122 QIIYADGLLATCLQHELDHLNGILFID-----HLSRLKRDMITK 160 LA QHELDHL G L +D + R K+ + Sbjct: 140 ISKRYADFLARVAQHELDHLEGKLIVDCEGPVYFPREKKAFFER 183 >gi|145531163|ref|XP_001451350.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419001|emb|CAK83953.1| unnamed protein product [Paramecium tetraurelia] Length = 219 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 15/169 (8%) Query: 6 LVIFPDP---ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI- 61 ++ D + + ++PI+ ++ + +I + + + L+ QIG Y++ V+ Sbjct: 20 ILRIGDKDYQKITQQTQPIQMMSQRMKQIIQCLKMTAAQENAVSLSCPQIGYNYQIFVVL 79 Query: 62 -------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 ++ + M INP+ + S V E C S P V+R I ++ Sbjct: 80 KHMKKNQWCYNNLSSSDYMTLINPQKLKQSRFTQVEWEECPSFPFLMGKVERPYKIEYQF 139 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 ++ + G A +QHE+DHL GI L + ++ K Sbjct: 140 INEKFKLIKQTLSGFEARVVQHEMDHLEGIT----LDSPDKMLLESKRE 184 >gi|302024517|ref|ZP_07249728.1| peptide deformylase [Streptococcus suis 05HAS68] Length = 155 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 12/131 (9%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVI-----DLQDHAHRKNPMVFINPKIITFSDDFSV 89 M E M G+GLAA QI V R++ + + ++ SV Sbjct: 12 MAEKMKLRGGVGLAAPQIDVSKRIIAVLVPNPEDEEGNPPAQAYSLQEVMYNPKIVAHSV 71 Query: 90 YQEGCLSIPDY-------RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + V R A +TV YMD N + I G A +QHE+DHLN Sbjct: 72 QEAAMEGGEGCLSVDREVQGYVVRHARVTVDYMDKNGEKHRIKLKGFNAIVVQHEIDHLN 131 Query: 143 GILFIDHLSRL 153 GI+F D + Sbjct: 132 GIMFYDRIDPE 142 >gi|239625206|ref|ZP_04668237.1| Def1 [Clostridiales bacterium 1_7_47_FAA] gi|239519436|gb|EEQ59302.1| Def1 [Clostridiales bacterium 1_7_47FAA] Length = 160 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 13/167 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVL 55 ++K +++ P L V + + + + +++ + G +AA QIGV Sbjct: 1 MEKTILLLGHPDLYEVCSEVTEEELPWMAEVKEDLKDTLLAFRKRYGVGRAIAAPQIGVK 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ H P++FINP++ + + C+S PD V+R + Y Sbjct: 61 KRVIY------RHLDTPVLFINPRLEFPDKEEMEVMDDCMSFPDLLVRVRRYKRCIIHYR 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + + +G +A +QHE DHL+GIL R + K+ Sbjct: 115 DEQWKECSLAFEGDMAELIQHEYDHLDGILATMRAID-DRAFVMKEY 160 >gi|169334954|ref|ZP_02862147.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] gi|169257692|gb|EDS71658.1| hypothetical protein ANASTE_01360 [Anaerofustis stercorihominis DSM 17244] Length = 158 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 12/154 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTD-----GIGLAAVQIGVL 55 + K +++ +P L +VS+ +++ + N+ ++ + + + G +AA QIG+ Sbjct: 1 MIKEILLLGNPNLYKVSKEVKEEEIQLLKNIEIDLHDTLMNYRKVHGAGRAIAAPQIGIE 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 R++ +++ NP + + + C+S P+ V+R + Y Sbjct: 61 KRILYMNIDKPILIVNPKLTFPD------SEKIQVMDDCMSFPNLTVKVERYKNCILNYK 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 D N + L+ +QHE DHL+GIL Sbjct: 115 DRNFSDCKMILKDDLSELIQHEYDHLDGILATMR 148 >gi|169350936|ref|ZP_02867874.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] gi|169291998|gb|EDS74131.1| hypothetical protein CLOSPI_01713 [Clostridium spiroforme DSM 1552] Length = 189 Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 22/173 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K ++ + +R VS+ + ++ D +L+ M E +G+A Sbjct: 3 TMKDIIDDSNKKIREVSKEVPLPLSDDDRDLLFKMHEFLVNSQDPELSKKYDLRPAVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFIN--------PKIITFSDDFSVYQEGCLSIPDY 100 A+Q+G+ R+ I + D+ + N + + + + + Sbjct: 63 AIQLGIPKRMCAIHVLDYDSKGNVVKANDYALVNPKIVSYTQKNSFLRDGEGCLSVNKEV 122 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R A +TV D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 123 QGYVPRHAKVTVEGYDLLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINK 175 >gi|194323397|ref|ZP_03057174.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] gi|194322252|gb|EDX19733.1| polypeptide deformylase [Francisella tularensis subsp. novicida FTE] Length = 186 Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%) Query: 16 RVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI--------DLQDH 66 + +P+ I +++I N+I M E M +GIGLAA QIG Y++ +I Sbjct: 3 QKCKPVADIQSAEIQNIIIEMHEKMQG-NGIGLAANQIGYPYQIFMIEFDSSNARYPFSF 61 Query: 67 AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126 + S + ++ + R + I + + + Sbjct: 62 DSVPYQVFINPKITKASKQRVSFWHGCLSALGEKRGKLATYKEIEYEAYNQHGEKITGKL 121 Query: 127 DGLLATCLQHELDHLNGILFID 148 D + A QHE +HL G +++D Sbjct: 122 DSIAAVIFQHEFNHLLGSVYVD 143 >gi|307329049|ref|ZP_07608216.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885244|gb|EFN16263.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 500 Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 15/159 (9%) Query: 3 KKPL--VIFPDPILRRVSRPIEKINS---------DIMNLIDNMLEVMYSTDGIGLAAVQ 51 + + V DPIL + +RP + ++++ + V G+G+AA Q Sbjct: 322 MRDIGMVQEGDPILTKTARPFALPDEAEDARRVVAELISAAERAATVHVFGKGMGVAAPQ 381 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IG+ ++ + +NP+I+ S + EGCLS D R V R I+ Sbjct: 382 IGIDRAAAIVRTPEGETLT----LLNPRIVEESPEADEQYEGCLSFFDVRGKVPRPLAIS 437 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 V + D + Q +I + +A + HE+DHL+G+L+ + Sbjct: 438 VEHQDIDGQQRITIFERGMARLVAHEVDHLHGLLYRARM 476 >gi|70726701|ref|YP_253615.1| peptide deformylase [Staphylococcus haemolyticus JCSC1435] gi|68447425|dbj|BAE05009.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 162 Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + LV P+L + ++PI+ ++ + +L+ ++ + +Y+ + L A QIG+ ++ + Sbjct: 1 MAIQKLVQSTHPVLTKQAQPIKAYDATLKDLLLDLEDTLYAEEASALCAPQIGISKQVAI 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + NPKI + S+D + EG +++P +V+RS IT+ D Sbjct: 61 I----DMEVEGLLQLFNPKIKSESNDKIIDLEGSVNLPGIYGEVERSKMITIEANDLEGN 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + A +A + H +D +NGI F L Sbjct: 117 TIELTAYDDVARMILHIVDQMNGIPFTKRAQHL 149 >gi|218188450|gb|EEC70877.1| hypothetical protein OsI_02402 [Oryza sativa Indica Group] gi|222618667|gb|EEE54799.1| hypothetical protein OsJ_02204 [Oryza sativa Japonica Group] Length = 155 Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 14/132 (10%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV--------------FINPKI 80 M+ VM G+GLAA QIGV +++V++ P INPK+ Sbjct: 1 MVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKL 60 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 T S +++ EGCLS+ YRA V+R + V +D N + + A G A LQHE DH Sbjct: 61 KTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDH 120 Query: 141 LNGILFIDHLSR 152 L G L++D + Sbjct: 121 LEGTLYVDTMVP 132 >gi|319937459|ref|ZP_08011864.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319807299|gb|EFW03908.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 189 Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 22/173 (12%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLI------------DNMLEVMYSTDGIGLAA 49 K ++ P++R +S+P+E I + L+ + M E + +G+AA Sbjct: 4 MKDIIDDHHPLIREISQPVEMPICQEDEQLLLDMHEFLVNSQDEEMSEKYHLRPAVGIAA 63 Query: 50 VQIGVLYRLVVID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101 VQ+GVL R+ I A + + D Sbjct: 64 VQVGVLKRMCAIHVLSYDDDGNISKADDYALVNPKIVSYTEKGSYLKDGEGCLSVNDDVE 123 Query: 102 ADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R A +TV+ D ++ I A G L+ CLQHELDH +G LF D +++ Sbjct: 124 GLVPRHAKVTVKGYDVLTHKNVTIVARGYLSICLQHELDHFDGKLFYDRINKE 176 >gi|289178283|gb|ADC85529.1| Peptide deformylase [Bifidobacterium animalis subsp. lactis BB-12] Length = 188 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 7/147 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ +V L R S P + + + ++ E + + +G+AA IG R+ Sbjct: 47 MQRTIVTD-TSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRV- 104 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP+I ++ + + R I V Y Sbjct: 105 -IAFVDEGLGSAITVMFNPQITAADGEYDACEGCLSLHGERH--TPRFRRIEVDYTTRKG 161 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NG+L Sbjct: 162 RARHATFTDWTAQIIQHEIDHCNGVLI 188 >gi|225550917|ref|ZP_03771866.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380071|gb|EEH02433.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G I D A + ++ K + + + D V R+ + Sbjct: 81 GWNKCATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|171920111|ref|ZP_02690482.2| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508474|ref|ZP_02689332.2| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701869|ref|ZP_02553797.2| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|171902473|gb|EDT48762.1| peptide deformylase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675891|gb|EDT87796.1| peptide deformylase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701174|gb|EDU19456.1| peptide deformylase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 198 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D A + ++ K + + + D V R+ + Sbjct: 81 GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|183602062|ref|ZP_02963431.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219682971|ref|YP_002469354.1| peptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|241190548|ref|YP_002967942.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195954|ref|YP_002969509.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218947|gb|EDT89589.1| peptide deformylase [Bifidobacterium animalis subsp. lactis HN019] gi|219620621|gb|ACL28778.1| polypeptide deformylase [Bifidobacterium animalis subsp. lactis AD011] gi|240248940|gb|ACS45880.1| peptide deformylase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250508|gb|ACS47447.1| peptide deformylase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793535|gb|ADG33070.1| peptide deformylase [Bifidobacterium animalis subsp. lactis V9] Length = 142 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 7/147 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ +V L R S P + + + ++ E + + +G+AA IG R+ Sbjct: 1 MQRTIVTD-TSFLSRPSDPADPADPLDAAIAQDLKETLAAHREECVGMAANMIGEPKRV- 58 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP+I ++ + + R I V Y Sbjct: 59 -IAFVDEGLGSAITVMFNPQITAADGEYDACEGCLSLHGERH--TPRFRRIEVDYTTRKG 115 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NG+L Sbjct: 116 RARHATFTDWTAQIIQHEIDHCNGVLI 142 >gi|309775748|ref|ZP_07670744.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916511|gb|EFP62255.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 184 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V D I+R S ++ + ++ L+ +ML E +G+AA+Q Sbjct: 7 DIVKDTDAIVRTKSEVVKLPLTAEDEALLMDMLSYVRDSQDAELAEANNLRPAVGIAAIQ 66 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAF 109 +GV R++ + + + + I + ++ V R+A Sbjct: 67 LGVAKRMLAVVVPNDEDIDEYALVNPRIISESVQRAYLKNGEGCLSVEKEHEGIVPRAAR 126 Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ITV+ D Q I A LA LQHE+DH +G LF D +++ Sbjct: 127 ITVKGYDLLQKQEITIKAKNYLAIVLQHEIDHFSGTLFYDRINK 170 >gi|13358028|ref|NP_078302.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762059|ref|YP_001752550.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|23396555|sp|Q9PQ25|DEF_UREPA RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|189083081|sp|B1AJA6|DEF_UREP2 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] - Ureaplasma urealyticum gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827636|gb|ACA32898.1| peptide deformylase [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 198 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D A + ++ K + + + D V R+ + Sbjct: 81 GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|284036700|ref|YP_003386630.1| formylmethionine deformylase [Spirosoma linguale DSM 74] gi|283815993|gb|ADB37831.1| formylmethionine deformylase [Spirosoma linguale DSM 74] Length = 168 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 13/152 (8%) Query: 5 PLVIFPDPILRRVSRPIEK-----INSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRL 58 L++ DP L + P+ + + + +L + M E+ G G+AA Q+G++ RL Sbjct: 6 DLLLLGDPRLYQTCEPVLESELPLVPDWVADLHNVMEEIRAKYQFGRGIAAPQLGIMKRL 65 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + P V INP+++ SD+ + C+S P+ V+R +T+ Y D + Sbjct: 66 IYL------NVDRPQVIINPELVAVSDETDELWDDCMSFPNLLVRVRRHKKLTLTYRDEH 119 Query: 119 AQHQIIYADGL-LATCLQHELDHLNGILFIDH 149 Q ++ +QHE DHLNG L Sbjct: 120 WQTHTWDVTDWRISELIQHEYDHLNGFLCTMR 151 >gi|194466630|ref|ZP_03072617.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] gi|194453666|gb|EDX42563.1| formylmethionine deformylase [Lactobacillus reuteri 100-23] Length = 136 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + KP++ +L + + P K + + L +++++ ++ + +G+AA IGV + Sbjct: 1 MIKPIIKD-HQLLGKKAIPTTKAD---LPLANDLIDTLNVHQAECVGMAANMIGVNKNAI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + NP+II S + + KR ITV + + + Sbjct: 57 IARIGPFNVV-----MFNPQIIAKSHPYQTAEGCLSLSGTRP--TKRYKQITVNFRNQSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A +QHE+DH NGI+ Sbjct: 110 QMQTLELTDFAAEIVQHEIDHCNGIII 136 >gi|185179123|ref|ZP_02555609.2| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024050|ref|ZP_02569693.2| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518296|ref|ZP_02556113.2| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195867564|ref|ZP_03079567.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225551606|ref|ZP_03772552.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184208960|gb|EDU06003.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019083|gb|EDU57123.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998245|gb|EDU67342.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660808|gb|EDX54062.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225379421|gb|EEH01786.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 198 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D A + ++ K + + + D V R+ + Sbjct: 81 GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|224541764|ref|ZP_03682303.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] gi|224525368|gb|EEF94473.1| hypothetical protein CATMIT_00936 [Catenibacterium mitsuokai DSM 15897] Length = 186 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 22/165 (13%) Query: 11 DPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQIGVLYR 57 +P++R S+ + ++ + + + M E G+G+AA+QIG+ R Sbjct: 9 NPLIREKSKEVTLPLSDEDRHTLMEMYQYLVDSQDEEKAEKYDLRPGVGIAAIQIGIPKR 68 Query: 58 LVVIDLQ--DHAHRKNPMVFINPKIITFSDDFS------VYQEGCLSIPDYRADVKRSAF 109 + I + D + D V RSA Sbjct: 69 MCAIYIPAVDEEGNIVKCDQWALVNPRIVASTVKVAYLKNGEGCLSVPEDQPGIVPRSAK 128 Query: 110 ITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 +TV+ D Q I A G A CLQHELDH GIL+ DH ++ Sbjct: 129 VTVKGYDALTDQEVTIVARGFTAICLQHELDHFEGILYYDHFNKE 173 >gi|325279635|ref|YP_004252177.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] gi|324311444|gb|ADY31997.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712] Length = 220 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 33/172 (19%) Query: 14 LRRVSRPIE--KINSDIMNLID-NMLEVMYS--TDGIGLAAVQIGVLYRLVVIDLQDHAH 68 LR+ + + +I +++ ++ ML + G+G+AA Q+G+ RL+ + D Sbjct: 50 LRQQAIELTPGEIRTELFQVLKQRMLATVNDSADPGVGIAAPQVGISRRLIAVQRYDKPG 109 Query: 69 RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY-------------- 114 I++ S++ S+ +EGCLS+PD +V RS I VRY Sbjct: 110 APFEFYINPG-IVSASEEQSLGKEGCLSVPDVVGEVWRSNEIVVRYIPELTSIKRMLSRE 168 Query: 115 -------------MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + G A QHE+DHLNGILF D + + Sbjct: 169 KTDSTFKFEVKVEYRNTWEPVCDTIRGFTAVIFQHEIDHLNGILFTDKMIKE 220 >gi|209554459|ref|YP_002284908.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541960|gb|ACI60189.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P PILR V++ IE +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRSGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D A + ++ K + + + D V R+ + Sbjct: 81 GWNKRATYIHFNDEAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSVDDDRSGYVIRNKKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKEYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|330798798|ref|XP_003287437.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] gi|325082584|gb|EGC36062.1| hypothetical protein DICPUDRAFT_32433 [Dictyostelium purpureum] Length = 238 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 51/199 (25%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ + +L++ + K SD+ L ID M + G G+AA QIG+ +L + Sbjct: 10 ILKVGNTVLKQKALAWTAKEMSDVKYLESVIDRMTK-EMGNVGTGIAAPQIGINKQLFLF 68 Query: 62 DLQDHAHRKNPMVFI--------------------------------------------- 76 + + F Sbjct: 69 EFDSQGLPVHCPNFPLTAFFNPKVEIIEEDVYMPPPGFSITTNKKILNLKRYKKSLQTFE 128 Query: 77 -NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + S++ E CLS+P+ A +KR+ + ++D + ++I A+G++A C Q Sbjct: 129 RSVPLKQTSNNTMEMYESCLSVPNIFAKIKRAKRCIITFLDITGKERVIDAEGIIAACFQ 188 Query: 136 HELDHLNGILFIDHLSRLK 154 HE DHL G L +D L K Sbjct: 189 HEYDHLLGRLLVDRLDPKK 207 >gi|256847494|ref|ZP_05552940.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] gi|256716158|gb|EEU31133.1| polypeptide deformylase [Lactobacillus coleohominis 101-4-CHN] Length = 136 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + KP++ + IL +VS P + + + + ++L+ + +GLAA IG+ R++ Sbjct: 1 MIKPIIHDQN-ILTKVSTPAQLSD---VKIAQDLLDTLQAHQESCVGLAANMIGIHKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I + +NP+II + + R ITV++MD Sbjct: 57 AITIGPARVA-----MLNPEIINHQQPYQTEEGCLSLNGQRA--TTRYQTITVQFMDIQG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q I +G A QHE+DH NGIL Sbjct: 110 HRQQITLNGFPAQIAQHEIDHCNGILI 136 >gi|223985568|ref|ZP_03635622.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] gi|223962475|gb|EEF66933.1| hypothetical protein HOLDEFILI_02928 [Holdemania filiformis DSM 12042] Length = 141 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + + +V DPIL SRP + ++ + + ++ + ++ G+AA IG R++ Sbjct: 5 MIREIVT--DPILL--SRPSREATAEDLAVAADLKDTLIAHADHCAGMAANMIGQSVRVI 60 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + D P+V INP+II +EGCLS+P R +R + +RY D + Sbjct: 61 AVFVAD-----QPLVLINPQIIKAEGRKYTAEEGCLSLPGTR-RAQRFEKLQLRYQDEQS 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHELDH GIL Sbjct: 115 RIKQRTFSGFTAQVIQHELDHCEGILI 141 >gi|209554070|ref|YP_002284901.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541571|gb|ACI59800.1| peptide deformylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 198 Score = 65.6 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ I+ +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D + ++ K + + + D V R + Sbjct: 81 GWNKRATYIHFDDGNEEYHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|312870530|ref|ZP_07730648.1| peptide deformylase [Lactobacillus oris PB013-T2-3] gi|311093927|gb|EFQ52253.1| peptide deformylase [Lactobacillus oris PB013-T2-3] Length = 136 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP+ + ILR+VS+P K + + + + L + +G+AA IGV R+++ Sbjct: 1 MIKPINRDVN-ILRQVSQPASKADLPVAQDLRDTL-TANADRCVGMAANMIGVTKRIIIA 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 L +V NP+I+ S + V + R I VR+ + + Sbjct: 59 SLGP-----LQVVMFNPQIVAKSGPYQVQEGCLSLSGQRS--TTRFQKIRVRFTNEQWEQ 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 Q + A +QHE DH NGIL Sbjct: 112 QELTFTAFPAEIIQHEFDHCNGILI 136 >gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group] gi|255673494|dbj|BAH91208.1| Os01g0636600 [Oryza sativa Japonica Group] Length = 198 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 39/101 (38%), Positives = 58/101 (57%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V +PDPILR ++ I + ++ +L D M +VMY TDGIGL+A Q+GV +L+V + Sbjct: 82 LKVVKYPDPILRARNKRINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNP 141 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +V +NP + S VY+E CLS P A+V Sbjct: 142 AGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPGIYANV 182 >gi|107025411|ref|YP_622922.1| aminotransferase, class IV [Burkholderia cenocepacia AU 1054] gi|105894785|gb|ABF77949.1| branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase [Burkholderia cenocepacia AU 1054] Length = 496 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 13/158 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGV 54 M + ++ LR V+RP++ + + + + + +AA QIG+ Sbjct: 1 MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + P V +NP+I+ SD + C+ PD V+R A ++VRY Sbjct: 60 GQRMIALA-----LDGWPDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114 Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDHLS 151 + + A ++ +QHE+DHL+G L D + Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDRAT 152 >gi|171920852|ref|ZP_02932018.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178960|ref|ZP_02964717.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024017|ref|ZP_02996776.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518292|ref|ZP_03003815.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524344|ref|ZP_03004376.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867842|ref|ZP_03079842.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273805|ref|ZP_03206339.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550531|ref|ZP_03771480.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551646|ref|ZP_03772592.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903056|gb|EDT49345.1| peptide deformylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209237|gb|EDU06280.1| peptide deformylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019044|gb|EDU57084.1| peptide deformylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998001|gb|EDU67098.1| peptide deformylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659819|gb|EDX53199.1| peptide deformylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660539|gb|EDX53796.1| peptide deformylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249560|gb|EDY74342.1| peptide deformylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379461|gb|EEH01826.1| peptide deformylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379685|gb|EEH02047.1| peptide deformylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 198 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 16/162 (9%) Query: 6 LVIFPDPILRRVSRPIE--KINSDIMNLIDNM---LEVMYSTD--------GIGLAAVQI 52 + P P+LR V++ I+ +++ D + + M ++V Y GI +AA Q+ Sbjct: 21 IFKDPHPVLREVTQDIQGYELSKDDIYYLKKMVRYIDVCYHNQAKKYKIRAGIAIAANQV 80 Query: 53 GVLYRLVVIDLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 G R I D + ++ K + + + D V R + Sbjct: 81 GWNKRATYIHFDDGNEEHHYLLINPHITKRSSQRAYLNPGEGCLSVDHDRSGYVIRYEKV 140 Query: 111 TVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLS 151 V+ D ++ I G++A C+QHE+ HL+ L+ D+++ Sbjct: 141 HVKAYDLISEQFIDKEFSGIIAICIQHEIGHLDAGLYYDNIN 182 >gi|167756524|ref|ZP_02428651.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] gi|167702699|gb|EDS17278.1| hypothetical protein CLORAM_02061 [Clostridium ramosum DSM 1402] Length = 189 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 22/174 (12%) Query: 2 VKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLA 48 K ++ + +R VS+ + I ++ L+ M E +G+A Sbjct: 3 TMKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIA 62 Query: 49 AVQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSV---YQEGCLSIPDY 100 A+Q+G+ R+ I + D N +NPKII+ ++ S + + Sbjct: 63 AIQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEV 122 Query: 101 RADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + V R A +TV+ D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 123 QGYVPRYAKVTVKGYDVLTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 176 >gi|154505120|ref|ZP_02041858.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] gi|153794599|gb|EDN77019.1| hypothetical protein RUMGNA_02633 [Ruminococcus gnavus ATCC 29149] Length = 159 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 12/165 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMY-----STDGIGLAAVQIGVL 55 +++ +++ +P L +S +++ + + ++ +M + + G +AA QIGV Sbjct: 1 MERDILLLGNPRLYEISEEVKREELEELRSVFTDMFDCIRGIRRDYGFGRAIAAPQIGVQ 60 Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 RL+ I P V INP++ ++ + C+S P+ V+R + Y+ Sbjct: 61 KRLICI------LTDQPYVIINPRLEFVGNEMMELMDDCMSFPNLLVRVRRYRRCILHYL 114 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 D N + Q +Y + ++ +QHE DHL+GIL K +I + Sbjct: 115 DENWKEQEMYLEDDMSELIQHEYDHLDGILATMRAIDNKSFVIKQ 159 >gi|315931998|gb|EFV10951.1| peptide deformylase [Campylobacter jejuni subsp. jejuni 327] Length = 74 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 46/74 (62%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +P+P L S + K ++++ L+D+M E M +++G+GLAA+Q+ + R++++ Sbjct: 1 MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGVGLAAIQVDIPLRVLLV 60 Query: 62 DLQDHAHRKNPMVF 75 ++ D + + Sbjct: 61 NIFDENDEQKKKIC 74 >gi|260584847|ref|ZP_05852592.1| peptide deformylase [Granulicatella elegans ATCC 700633] gi|260157504|gb|EEW92575.1| peptide deformylase [Granulicatella elegans ATCC 700633] Length = 137 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 +KK ++ DP L + + P I +I ++ + + +GLAA IG + Sbjct: 1 MKKEIMK--DPFFLSQKAIPANPITD--KQVIVDLQDTLRANRDRCVGLAANMIGSHKAI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ +NP I S + + R I VRY D Sbjct: 57 IIVAAGPFDIV-----MVNPVITKKSQPYQTEEGCLSHTGMKS--TTRYQKIEVRYQDAT 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DHL GIL Sbjct: 110 GKTHTGTFTEFTAQVIQHEIDHLQGILI 137 >gi|149038103|gb|EDL92463.1| component of oligomeric golgi complex 8 (predicted), isoform CRA_a [Rattus norvegicus] Length = 141 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 14/128 (10%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84 M +GL+A Q+GV +++V++ D V +NP + Sbjct: 1 MRRRGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLD 60 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + EGC S+ + A V R + + +D + + A G A +QHE+DHL+G Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGC 120 Query: 145 LFIDHLSR 152 LFID + Sbjct: 121 LFIDKMDS 128 >gi|170737315|ref|YP_001778575.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] gi|169819503|gb|ACA94085.1| aminotransferase class IV [Burkholderia cenocepacia MC0-3] Length = 496 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 13/156 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDG-----IGLAAVQIGV 54 M + ++ LR V+RP++ + + + + + +AA QIG+ Sbjct: 1 MNTR-ILPVGTASLRDVARPVDDVGTPAVREAASALRAALRAFRDEHGFGRAVAAPQIGI 59 Query: 55 LYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 R++ + P V +NP+I+ SD + C+ PD V+R A ++VRY Sbjct: 60 GQRMIALA-----LDGWPDVIVNPEIVWRSDARMTLWDDCMCFPDLFVRVERHASVSVRY 114 Query: 115 MDCNAQHQIIYA-DGLLATCLQHELDHLNGILFIDH 149 + + A ++ +QHE+DHL+G L D Sbjct: 115 TTLDGEPHQRDALSPDVSELMQHEIDHLDGKLSFDR 150 >gi|324017857|gb|EGB87076.1| conserved domain protein [Escherichia coli MS 117-3] Length = 48 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 ADGLLA C+QHE+DHL G LF+D+LS LK+ I +K+ KL +L+ Sbjct: 1 EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 45 >gi|257063393|ref|YP_003143065.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256791046|gb|ACV21716.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 140 Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 11/147 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 + + +V D IL S+P ++ ++ +++++++ + S GLAA QIG R+VV Sbjct: 1 MIREIVTD-DEIL---SKPCDEGTAEDAAIVEDLIDTLKSLETAAGLAANQIGETKRIVV 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 P NP I + +V +E Y + + N Q Sbjct: 57 YLDMKDN----PHAMFNPVIKMALNPSTVAEECLSHEGQYVTVKRFAKINVAYQELINGQ 112 Query: 121 --HQIIYADGLLATCLQHELDHLNGIL 145 + +G A +QH +DH NG L Sbjct: 113 LVDRKRKFEGWTAQVIQHLVDHCNGKL 139 >gi|310287644|ref|YP_003938902.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|311064553|ref|YP_003971278.1| peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313140433|ref|ZP_07802626.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] gi|309251580|gb|ADO53328.1| Peptide deformylase [Bifidobacterium bifidum S17] gi|310866872|gb|ADP36241.1| Fms Peptide deformylase [Bifidobacterium bifidum PRL2010] gi|313132943|gb|EFR50560.1| polypeptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 141 Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + + +G+AA IGV R++V +++ Sbjct: 12 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVFQDKENNRNAI 71 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 NP+II SD F + D R ITV Y + + DG A Sbjct: 72 ---MFNPRIIAGSDPFDTAEGCLS--LDGERPTTRYQSITVTYQARSGREYTTAFDGFTA 126 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH+NGI+ Sbjct: 127 QIIQHEIDHVNGIII 141 >gi|224283284|ref|ZP_03646606.1| peptide deformylase [Bifidobacterium bifidum NCIMB 41171] Length = 136 Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + N + ++ + + + + +G+AA IGV R++V +++ Sbjct: 7 LSQASAPADPSNDEDRATATDLRDTLAAHRGECVGMAANMIGVAKRIIVFQDKENNRNAI 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 NP+II SD F + D R ITV Y + + DG A Sbjct: 67 ---MFNPRIIAGSDPFDTAEGCLS--LDGERPTTRYQSITVTYQARSGREYTTAFDGFTA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH+NGI+ Sbjct: 122 QIIQHEIDHVNGIII 136 >gi|153880447|ref|ZP_02004994.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] gi|152063089|gb|EDN65006.1| hypothetical protein BGP_6138 [Beggiatoa sp. PS] Length = 47 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 27/33 (81%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + +G+LA C+QHE+DHLNG LF+D+LS LKR Sbjct: 1 MTTEGVLAVCIQHEIDHLNGKLFVDYLSSLKRQ 33 >gi|237733122|ref|ZP_04563603.1| polypeptide deformylase [Mollicutes bacterium D7] gi|229383804|gb|EEO33895.1| polypeptide deformylase [Coprobacillus sp. D7] Length = 186 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 22/173 (12%) Query: 3 KKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLE------------VMYSTDGIGLAA 49 K ++ + +R VS+ + I ++ L+ M E +G+AA Sbjct: 1 MKDIIDDHNEKIREVSKEVALPITNEERELLLQMHEFLVNSQDPETSEKYDLRPAVGIAA 60 Query: 50 VQIGVLYRLVVIDLQDHAHRKN-----PMVFINPKIITFSDDFSV---YQEGCLSIPDYR 101 +Q+G+ R+ I + D N +NPKII+ ++ S + + + Sbjct: 61 IQLGIPKRMTAIHVLDFDEDGNVIGADDYALVNPKIISHTEKQSYLKDGEGCLSVNDEVQ 120 Query: 102 ADVKRSAFITVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V R A +TV+ D Q I A G L+ CLQHELDH G LF D +++ Sbjct: 121 GYVPRYAKVTVKGYDILTDQEVKIVARGFLSICLQHELDHFEGTLFYDRINKE 173 >gi|148544448|ref|YP_001271818.1| peptide deformylase [Lactobacillus reuteri DSM 20016] gi|184153812|ref|YP_001842153.1| peptide deformylase [Lactobacillus reuteri JCM 1112] gi|227363124|ref|ZP_03847259.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|325682770|ref|ZP_08162286.1| peptide deformylase [Lactobacillus reuteri MM4-1A] gi|148531482|gb|ABQ83481.1| formylmethionine deformylase [Lactobacillus reuteri DSM 20016] gi|183225156|dbj|BAG25673.1| polypeptide deformylase [Lactobacillus reuteri JCM 1112] gi|227071842|gb|EEI10130.1| peptide deformylase [Lactobacillus reuteri MM2-3] gi|324977120|gb|EGC14071.1| peptide deformylase [Lactobacillus reuteri MM4-1A] Length = 136 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP++ +L + + P K + + + + L + + +G+AA IGV ++ Sbjct: 1 MIKPIIKD-QQLLAKKATPTTKADLPLATDLSDTLNA-HQAECVGMAANMIGVNKNAIIA 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + NP+I+ S + + KR ITV++ + + Q Sbjct: 59 RIGPFNVV-----MFNPQIVAKSHPYQTTEGCLSLSGTRP--TKRYKQITVKFRNQSWQV 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 Q + A +QHE+DH NGI+ Sbjct: 112 QTLELADFAAEIIQHEIDHCNGIII 136 >gi|315931997|gb|EFV10950.1| polypeptide deformylase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 102 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 36/82 (43%), Positives = 50/82 (60%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 INP+II ++ EGCLS+PD+ +VKR I ++Y D + + + A G LA + Sbjct: 4 IINPEIIPLDEEMITCTEGCLSVPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAI 63 Query: 135 QHELDHLNGILFIDHLSRLKRD 156 QHE DHLNG LFI+ +S KR Sbjct: 64 QHENDHLNGHLFIEKISFAKRQ 85 >gi|319957487|ref|YP_004168750.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511] gi|319419891|gb|ADV47001.1| formylmethionine deformylase [Nitratifractor salsuginis DSM 16511] Length = 283 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 8/165 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K LV++PD + + + + L++++ E M + L A+Q+ + ++V Sbjct: 1 MVKELVVYPDDRILS-CVDVRDFRDESLPRLLNDIEETMEAHGLNALTAMQVAHPFNIIV 59 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I +D ++ INP+I+ F + PD V R I + Y D N Q Sbjct: 60 IKKEDGSY----WELINPRILKKEGRFEHQE-STSYYPDIELTVPRYEKINLIYEDRNGQ 114 Query: 121 HQIIYADGL-LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 I + LA +Q ++D L G +D + + R+ + ++ Sbjct: 115 PHSIKIEDRELAALIQQQMDFLAGGTPLDRVDKNYREKVLTALAN 159 >gi|238923534|ref|YP_002937050.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238875209|gb|ACR74916.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K +V DP L + S + + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKKIVK--DPLFLAQKSVDATEPD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + +IT +EGCLS+ R R I V Y+D + Sbjct: 56 IVVAAGPFQFA------MINPVITKKSGAYQTEEGCLSLEGVR-PCTRYQEIEVDYLDQS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGI+ Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCNGIVI 136 >gi|301775659|ref|XP_002923264.1| PREDICTED: peptide deformylase, mitochondrial-like [Ailuropoda melanoleuca] gi|281349917|gb|EFB25501.1| hypothetical protein PANDA_012363 [Ailuropoda melanoleuca] Length = 141 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 14/128 (10%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQD--------------HAHRKNPMVFINPKIITFS 84 M +GL+A Q+GV +++ ++ + VF+NP + Sbjct: 1 MRRRRCVGLSAPQLGVPLQVLALEFPEALFRACAPGLREARQMEPFPLRVFVNPSLRVLD 60 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + EGC S+ + A V R + + +D + + A G A +QHE+DHL G Sbjct: 61 SRLVTFPEGCESVAGFLACVPRFQAVQISGLDPKGEQVVWQASGWAARIIQHEMDHLQGC 120 Query: 145 LFIDHLSR 152 LFID + Sbjct: 121 LFIDKMDS 128 >gi|299116829|emb|CBN74941.1| chloroplast peptide deformylase (Partial) [Ectocarpus siliculosus] Length = 209 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P LR + IE + D+ L +M ++MY+ G+GLAA Q+GV RL+V + + Sbjct: 95 ILKYPHPALRAENDEIEVFDDDVKKLARDMFKIMYAAKGVGLAAPQVGVNKRLMVFNPEG 154 Query: 66 HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 A + + +NPKI+ +EGCLS P Sbjct: 155 DAKNWLDEAILVNPKIVASGKGRITAEEGCLSFPGMEGKKD 195 >gi|119025798|ref|YP_909643.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] gi|118765382|dbj|BAF39561.1| peptide deformylase 2 [Bifidobacterium adolescentis ATCC 15703] Length = 106 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHE 137 ++ + EGCLS+P +R+ + VR +D + + ++ G++ LQHE Sbjct: 17 NPVLEEASGEQYGDEGCLSVPGLWYKTRRADYARVRGIDLDGKPVVLEGHGIMGRMLQHE 76 Query: 138 LDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 DHL+G +++D L + +R + M + Sbjct: 77 TDHLDGHVYLDRLEKEERREAMRYMRTHRK 106 >gi|23008036|ref|ZP_00049646.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum magnetotacticum MS-1] Length = 145 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 3/141 (2%) Query: 29 MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS 88 + ++L+ + + +GL A IG RLVVI LQ +++P ++ S + + Sbjct: 3 RAVSADVLDTLGAVSAMGLTAPHIGRPERLVVIRLQPDEPHAT---YVDPVVVWASAERA 59 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFID 148 + EG +S+P V+R A + VRY D + + A+GL A CLQHE+D L+GI +ID Sbjct: 60 SHPEGSVSMPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQLDGIFWID 119 Query: 149 HLSRLKRDMITKKMSKLVQLR 169 L+RL+RD + K+ +KL + Sbjct: 120 RLTRLRRDRVLKRFAKLKAQQ 140 >gi|221108715|ref|XP_002169101.1| PREDICTED: similar to CG31373 CG31373-PA, partial [Hydra magnipapillata] Length = 143 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 41/99 (41%), Positives = 54/99 (54%) Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + + D + VFIN +II D Y+EGCLSIP RADV R F+T+R Sbjct: 17 INEGAETEEDIDPSLIDFKKVFINAEIIEEDGDEWAYEEGCLSIPGVRADVYRPEFVTIR 76 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 Y D + +GL A +QHE DH++GILF DHL+ Sbjct: 77 YFDTDWVEHTETYEGLAARIIQHEYDHIDGILFTDHLTS 115 >gi|238922278|ref|YP_002935792.1| hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] gi|238873950|gb|ACR73658.1| Hypothetical protein EUBELI_20514 [Eubacterium eligens ATCC 27750] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + K +V DP L + S + + ++ ++L+ +G+AA IGV + Sbjct: 1 MVKKIVK--DPFFLAQKSVDATESD---KQVVTDLLDTLIANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ P F + + E + R I V Y+D N Sbjct: 56 IVV-------AAGPFQFPMINPVITNKSGEYQTEEGCLSLEGVRPCTRYQDIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NG++ Sbjct: 109 FKKQHRKYSGWTAQIIQHEIDHCNGVVI 136 >gi|160935285|ref|ZP_02082667.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] gi|158441643|gb|EDP19343.1| hypothetical protein CLOBOL_00180 [Clostridium bolteae ATCC BAA-613] Length = 173 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 4 KPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEV-----MYSTDGIGLAAVQIGVLYR 57 + +++ +P L S+ ++ + + + +++ + G +AA QIGV R Sbjct: 16 RTILLLGNPELYEASQEVKIEELHQMEQVREDLKDTLLAFRARYGVGRAIAAPQIGVKKR 75 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ H P++FINP++ + + C+S PD VKR + Y D Sbjct: 76 VIY------RHLDTPVLFINPRLTFPEQEMIDVLDDCMSFPDLLVRVKRYKRCIIYYKDL 129 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGIL 145 + G ++ +QHE DHL+GIL Sbjct: 130 EWNDCSMELKGDMSELIQHEYDHLDGIL 157 >gi|197301435|ref|ZP_03166515.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] gi|197299473|gb|EDY33993.1| hypothetical protein RUMLAC_00166 [Ruminococcus lactaris ATCC 29176] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59 + + ++ I R ++P + + +I + ++L+ + + I +AA IG+ ++ Sbjct: 1 MVRNIIK-GKKIFGRKAKPATEADQEI---VTDLLDTLRANREICVGMAANMIGINKSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + + +IT +EGCLS+ R R I V Y+D N Sbjct: 57 AVAVGPFQFA------MINPVITKMSGEYKTEEGCLSLEGTR-LCTRYEEIEVDYLDSNF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q G A +QHE+DH GI+ Sbjct: 110 QFCHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|81429108|ref|YP_396108.1| peptide deformylase [Lactobacillus sakei subsp. sakei 23K] gi|78610750|emb|CAI55801.1| Formylmethionine deformylase (formyl-L-methionyl peptideamidohydrolase) [Lactobacillus sakei subsp. sakei 23K] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLV 59 + KP++ L +V+ P ++ + I ++++ + + +G+AA IGV R++ Sbjct: 1 MIKPIMHD-TEFLSQVALPATTADTAV---ITDLIDTLQANTDRCVGMAANMIGVNKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ + P++ +NPKII S+ + + + KR I V Y D Sbjct: 57 IVQM-----GILPVIMVNPKIIRHSNPYQTEEGCLSLVGQRS--TKRYETIEVSYQDRQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q G +A +QHE+DH GIL Sbjct: 110 KAQQQAFSGWVAQIIQHEIDHCEGILI 136 >gi|1361510|pir||G64211 formylmethionine deformylase homolog - Mycoplasma genitalium Length = 226 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%) Query: 16 RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63 + + + I+ I I M+ + ++ GIG+AA QIG +L I L Sbjct: 53 KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 112 Query: 64 QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120 D K ++ I + + ++ V RS +IT++ D + Sbjct: 113 NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 172 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I A GL CLQHE DHL G F ++ L Sbjct: 173 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 205 >gi|227543949|ref|ZP_03973998.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300909699|ref|ZP_07127160.1| peptide deformylase [Lactobacillus reuteri SD2112] gi|227186065|gb|EEI66136.1| peptide deformylase [Lactobacillus reuteri CF48-3A] gi|300893564|gb|EFK86923.1| peptide deformylase [Lactobacillus reuteri SD2112] Length = 136 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + KP++ D L ++ + L +++++ + + +G+AA IGV + Sbjct: 1 MIKPIIK--DQQLL--AKKATLTTKADLPLANDLIDTLNAHQAECVGMAANMIGVNKNAI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + NP+I+ S + + KR ITV++ + + Sbjct: 57 IARIGPFNVL-----MFNPQIVAKSHPYQTTEGCLSLSGTRP--TKRYKQITVKFRNQSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A +QHE+DH NGI+ Sbjct: 110 QVQTLELTDFAAEIIQHEIDHCNGIII 136 >gi|290476476|ref|YP_003469381.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] gi|289175814|emb|CBJ82617.1| peptide deformylase (fragment) [Xenorhabdus bovienii SS-2004] Length = 96 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59 M ++ PD LR+ + ++ +I LID+ML+ MY +GIGLAA Q+G ++ Sbjct: 1 MAILNILTIPDERLRQKCIDVTHVD-EIQTLIDDMLDTMYDTDNGIGLAAPQVGRKEAVL 59 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95 +ID+ + R PMV +NPKI+ + Sbjct: 60 IIDISPN--RDQPMVLVNPKIVEKERRVVNQEGCLS 93 >gi|307069643|ref|YP_003878120.1| peptide deformylase [Candidatus Zinderia insecticola CARI] gi|306482903|gb|ADM89774.1| peptide deformylase [Candidatus Zinderia insecticola CARI] Length = 144 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 85/142 (59%), Gaps = 2/142 (1%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P+ L ++S+ I KIN+ I NLI M E+MY+ GIGL+A+ + + + + Sbjct: 4 IINYPNKNLFKISKKIYKINNKIKNLIFYMSEIMYNLLGIGLSAI--QINKKKKIFIIDI 61 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 ++ +FIN KI+ S ++EGCLS P ++KRS +I + +++ + +I Sbjct: 62 SKNKNKLKIFINSKILYLSKKKIYFKEGCLSFPGIYKNIKRSIYIKIIFINIKGKFKIYK 121 Query: 126 ADGLLATCLQHELDHLNGILFI 147 + + + C+QHE++H+NG +F+ Sbjct: 122 SKNIFSICIQHEIEHINGKIFL 143 >gi|307691872|ref|ZP_07634109.1| formylmethionine deformylase [Ruminococcaceae bacterium D16] Length = 136 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + + D L + + P + I ++LE + +G+AA IGV R+ Sbjct: 1 MIRDICK--DETFLAQKAEPATPDDLPI---AADLLETLEHHKAGCVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + MV NP+II S + + A KR I VR+ + Sbjct: 56 IAFDNEGTY-----MVMFNPEIIKQSGPYEAEEGCLSLTGTRPA--KRWKSIKVRWQNEK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q ++ G A +QHE+DH GI+ Sbjct: 109 FQERLKTFTGWTAQIIQHEIDHCEGIII 136 >gi|266624674|ref|ZP_06117609.1| peptide deformylase [Clostridium hathewayi DSM 13479] gi|288863453|gb|EFC95751.1| peptide deformylase [Clostridium hathewayi DSM 13479] Length = 121 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+GLAA Q+GVL ++VVID++D + +IT + EGCLS+P Sbjct: 1 GVGLAAPQVGVLKQIVVIDVEDGNQ-----YVLINPVITETSGSQTGSEGCLSVPGKSGV 55 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V R + V+ DC + +GLLA + HE DHL+G LF+D + Sbjct: 56 VTRPDHVKVKAFDCEMNEFELIGEGLLARAICHECDHLSGDLFVDKVE 103 >gi|157825208|ref|YP_001492928.1| polypeptide deformylase [Rickettsia akari str. Hartford] gi|157799166|gb|ABV74420.1| Polypeptide deformylase [Rickettsia akari str. Hartford] Length = 100 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 42/98 (42%) Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 ++INP D EG S+ + V R I D N +G Sbjct: 1 MPKTIWINPSYKQVDIDKHEDYEGFFSVENATGPVARFKKIHCHAYDINGHQIQGITEGF 60 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 LA +QHE+DHLNG +F+D+++ K K + K + Sbjct: 61 LARVIQHEIDHLNGKVFLDYVAPEKIMTKEKYLEKRKK 98 >gi|323704619|ref|ZP_08116197.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536081|gb|EGB25854.1| formylmethionine deformylase [Thermoanaerobacterium xylanolyticum LX-11] Length = 117 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M + + DPIL + ++ +EKI+ I+ ++++M E MY+ DG+GLAA QIG+L RLVV Sbjct: 1 MALRYIREIGDPILYKKAKQVEKIDEHILMILEDMAETMYNADGVGLAANQIGILRRLVV 60 Query: 61 I 61 + Sbjct: 61 V 61 >gi|77024073|gb|ABA55507.1| chloroplast peptide deformylase [Isochrysis galbana] Length = 200 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 ++ +P P+LR + + + + L M +MY++ G+GLAA Q+G+ RL+V + + Sbjct: 86 ILEYPHPLLRAPNSEVVSFDDSLRKLTREMFAIMYASRGVGLAAPQLGINKRLMVFNPEG 145 Query: 66 HAHR-KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + +V NP+I+ +EGCLS P + ADV R+ +I V + Sbjct: 146 KKEKWMSEVVLCNPRIVERGAGKETDEEGCLSFPGFTADVDRAGWIQVEFQTGRG 200 >gi|299116828|emb|CBN74940.1| dubious peptide deformylase [Ectocarpus siliculosus] Length = 97 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 V+R ++ V ++ + A QHE DHL+G ++IDHLS +R+ + + Sbjct: 25 QVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPPEREKVQPVL 84 Query: 163 SKLV 166 KLV Sbjct: 85 DKLV 88 >gi|313885254|ref|ZP_07819006.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] gi|312619945|gb|EFR31382.1| peptide deformylase [Eremococcus coleocola ACS-139-V-Col8] Length = 136 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K +V + L + ++P K + ++ + + L+ +G+AA IG+ ++++ Sbjct: 1 MIKEIVTD-NFFLSQKAKPATKEDQAVIQDLKDTLKAHRHH-CVGMAANMIGINKAIIIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +NP+I + + + + +R I V+Y+D + Sbjct: 59 AMGPLDLV-----MVNPEITSQAKPYQTQEGCLSHTGQKP--TQRYQEIQVQYLDEHFHP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + G LA +QHE+DHL GIL Sbjct: 112 KNRRFQGPLAQVIQHEMDHLAGILI 136 >gi|2507258|sp|P47352|DEF_MYCGE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase Length = 216 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%) Query: 16 RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63 + + + I+ I I M+ + ++ GIG+AA QIG +L I L Sbjct: 43 KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 102 Query: 64 QDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120 D K ++ I + + ++ V RS +IT++ D + Sbjct: 103 NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 162 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I A GL CLQHE DHL G F ++ L Sbjct: 163 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 195 >gi|167950137|ref|ZP_02537211.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 80 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQ 51 M ++ PDP L++ S +E+ + + ID++ E + +G+AA Q Sbjct: 1 MAILEILKLPDPRLKQPSELVEQFDDALRAFIDDLEETRVNGPAAVGIAAPQ 52 >gi|312868505|ref|ZP_07728705.1| peptide deformylase [Streptococcus parasanguinis F0405] gi|311096250|gb|EFQ54494.1| peptide deformylase [Streptococcus parasanguinis F0405] Length = 185 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 +KK +V +L + S + L ++ + + + + +GLAA IGV R Sbjct: 50 MKKNIVK---DVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 103 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++I + NP ++ + + + R I+V Y D Sbjct: 104 AIIIRMGSENLV-----LFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEISVAYRDV 156 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + I+ G A QHE+DHL GI+ Sbjct: 157 NWKAKTIHLSGFPAQICQHEMDHLEGIII 185 >gi|227509076|ref|ZP_03939125.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191463|gb|EEI71530.1| peptide deformylase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 136 Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P L + ++P +S +I ++L+ + + +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATSADS---QIITDLLDTLRANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + P+ +NP+I+ S F+ + + + R ITV Y+D N Sbjct: 56 IVVQM-----GMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|152990073|ref|YP_001355795.1| hypothetical protein NIS_0324 [Nitratiruptor sp. SB155-2] gi|151421934|dbj|BAF69438.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 266 Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 7/152 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M ++ +PD L ++S I + I +++ + + + + LAA+QIG R++ Sbjct: 1 MA--KILTYPDHTLLQISGLIRDFKDPKINEIVEEIKKTIEENNLQALAAIQIGEPLRII 58 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ +D + I K + + S+P+ V+R I V Y D Sbjct: 59 VLKKKDGTYEVMINPTIYGKEGQYFASTESDE----SLPNIEVTVQRYPVIKVMYEDLQG 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + A A LQ ++D + G D LS Sbjct: 115 NQKFYTAKDDEAVLLQRKIDMVFGGYLFDKLS 146 >gi|37626213|gb|AAQ96588.1| hypothetical protein [Vibrio phage VP16C] Length = 137 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L ++ + D+ L+D M M + GIGLA Q+GVL R++V+ K Sbjct: 11 LHAIAADVPH-GEDVTGLVDAMTAAMTAAGGIGLAGNQLGVLKRVIVVR-----APKFKG 64 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 +NP I + +EGCLS P D KR ITV D + Q + A GL A C Sbjct: 65 CIVNPVITRHTSGHVNSREGCLSFPGKTVDKKRHNKITVEGFDAHWQPIKVEAKGLTAFC 124 Query: 134 LQHELDHLNGILF 146 +QHE+DHLNG+ Sbjct: 125 IQHEIDHLNGVTI 137 >gi|289677569|ref|ZP_06498459.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 47 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGL 47 M ++ FPD LR +++P+ ++ I L+D+M E MY GIGL Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGL 47 >gi|239940680|ref|ZP_04692617.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|239987159|ref|ZP_04707823.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 11379] gi|291444118|ref|ZP_06583508.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] gi|291347065|gb|EFE73969.1| formylmethionine deformylase [Streptomyces roseosporus NRRL 15998] Length = 189 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 12/155 (7%) Query: 6 LVIFPDPILRRVSR---------PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56 +V IL +R E++ ++ +D + +V G+GLAA QIG+ Sbjct: 15 VVQQGAAILTERARAFDLPAERDEAERVVDELFAAMDRIGQVHPFAKGMGLAAPQIGISR 74 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 V+ A +V +NP+I ++ + EGCLS D R V R ITV Sbjct: 75 AAAVVQPPGDAPS---IVLLNPRITVCCNESDEHYEGCLSFFDVRGPVPRPLTITVETTT 131 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + + LA + HE+DHL G+L+ ++ Sbjct: 132 QSGETVTTAYERGLARLIHHEIDHLGGLLYTARMN 166 >gi|149378482|ref|ZP_01896166.1| peptide deformylase [Marinobacter algicola DG893] gi|149357233|gb|EDM45771.1| peptide deformylase [Marinobacter algicola DG893] Length = 43 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 27/43 (62%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44 + ++ +PDP LR +++P++++ + LID+M E MY G Sbjct: 1 MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPG 43 >gi|108885085|ref|NP_072768.2| peptide deformylase [Mycoplasma genitalium G37] gi|255660128|ref|ZP_05405537.1| peptide deformylase [Mycoplasma genitalium G37] gi|84626150|gb|AAC71324.2| peptide deformylase [Mycoplasma genitalium G37] gi|166078861|gb|ABY79479.1| peptide deformylase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 193 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 15/153 (9%) Query: 16 RVSRPIE-KINSDIMNLIDNMLEVMYST-----------DGIGLAAVQIGVLYRLVVIDL 63 + + + I+ I I M+ + ++ GIG+AA QIG +L I L Sbjct: 20 KPTEAVNFPIDEQIETCIKKMIAYVDASYDGKAQEYDIIPGIGIAANQIGYWKQLFYIHL 79 Query: 64 QDHAHRKNPMVFINPKIITFSD--DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN-AQ 120 D K ++ I + + ++ V RS +IT++ D + Sbjct: 80 NDLNKEKKCLLINPKIIDQSENKAFLESGEGCLSVKKQHKGYVIRSEWITIKGYDWFEKK 139 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 I A GL CLQHE DHL G F ++ L Sbjct: 140 EITIKATGLFGMCLQHEFDHLQGRFFYQRINPL 172 >gi|153206215|ref|ZP_01945478.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165919286|ref|ZP_02219372.1| peptide deformylase [Coxiella burnetii RSA 334] gi|120577345|gb|EAX33969.1| peptide deformylase [Coxiella burnetii 'MSU Goat Q177'] gi|165917009|gb|EDR35613.1| peptide deformylase [Coxiella burnetii RSA 334] Length = 209 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65 +L +V+ +E + I+ M S G G AA Q+G+ R+++++ Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|167947582|ref|ZP_02534656.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 58 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162 D + +G A LQHE+DHL+GILF+D L + D+ +K+ Sbjct: 1 DPYGEPLEFDMEGYEARALQHEVDHLDGILFVDRLVSRRTDLFQRKV 47 >gi|260663513|ref|ZP_05864403.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] gi|260552054|gb|EEX25107.1| polypeptide deformylase [Lactobacillus fermentum 28-3-CHN] Length = 136 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATNAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L +NP+++ + + + R ITV Y D Sbjct: 57 AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A +QHE DHL GIL Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136 >gi|161830302|ref|YP_001597698.1| peptide deformylase [Coxiella burnetii RSA 331] gi|161762169|gb|ABX77811.1| peptide deformylase [Coxiella burnetii RSA 331] Length = 209 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNM-LEVMYSTDGIGLAAVQIGVLYRLVVIDLQ-----D 65 +L +V+ +E + I+ M + G AA Q+G+ R+++++ Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri] gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri] Length = 175 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 38/100 (38%), Positives = 59/100 (59%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 + +P P LR + PIE ++++ L M ++MY T G GLAA Q+GV YR++V + Sbjct: 71 IAKYPAPCLRAKNAPIETFDANLEQLSKAMFKIMYETVGCGLAAPQVGVNYRMMVYNEAG 130 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVK 105 + +V NPKI+ +S + ++EGCLS P ADV+ Sbjct: 131 EPGKGREVVLCNPKIVKYSKEKDFFEEGCLSFPKMYADVE 170 >gi|145491449|ref|XP_001431724.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398829|emb|CAK64326.1| unnamed protein product [Paramecium tetraurelia] Length = 180 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 13/162 (8%) Query: 5 PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD------GIGLAAVQIGVLYRL 58 ++ ILR+ + + + M++ + + + LAA Q+G RL Sbjct: 13 KVLPISHEILRKKIFEHYNFTNKEEDTLSTMIDTLRLYNKLHSIEALALAAPQVGWEKRL 72 Query: 59 VVIDLQD-------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 V + +K + I +D + P+ A V RS IT Sbjct: 73 FVCADLELQQRKKAKYIQKVDVYLNPEIIKKSNDLIVSKENCLSIPPNQIACVMRSNKIT 132 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 ++Y + ++ A+GL A QHE+DHL+GI ++ + + Sbjct: 133 MKYYNLLGIEMVVEAEGLQACIYQHEIDHLDGINALEKATSI 174 >gi|227515637|ref|ZP_03945686.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] gi|227086067|gb|EEI21379.1| peptide deformylase [Lactobacillus fermentum ATCC 14931] Length = 136 Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L +NP+++ + + + R ITV Y D Sbjct: 57 AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A +QHE DHL GIL Sbjct: 110 AQQELELTGLAAQAVQHECDHLRGILI 136 >gi|209363680|ref|YP_001423542.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212217854|ref|YP_002304641.1| peptide deformylase [Coxiella burnetii CbuK_Q154] gi|207081613|gb|ABS76532.2| peptide deformylase [Coxiella burnetii Dugway 5J108-111] gi|212012116|gb|ACJ19496.1| peptide deformylase [Coxiella burnetii CbuK_Q154] Length = 213 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65 +L +V+ +E + I+ M S G G AA Q+G+ R+++++ Sbjct: 17 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 77 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 136 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + QHE+DHL G +++D Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168 >gi|261338163|ref|ZP_05966047.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] gi|270276799|gb|EFA22653.1| peptide deformylase [Bifidobacterium gallicum DSM 20093] Length = 152 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 6/135 (4%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + +RP + N + + + ++ + + + +G+AA IG + +I D Sbjct: 22 LAKPARPADPSNPEDLQIAQDLKDTLRAHSDGCVGMAANMIGEP--VAIIVFVDDEMGGG 79 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 +NP+I T + + D V R+ +I V Y + + + +G A Sbjct: 80 ITTMLNPRITTAQQYYETAEGCLS--LDGERAVTRAQYIEVDYDNTKGKPRHARFEGFTA 137 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH G + Sbjct: 138 QIIQHEVDHCLGKII 152 >gi|28379384|ref|NP_786276.1| peptide deformylase [Lactobacillus plantarum WCFS1] gi|254557520|ref|YP_003063937.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308181597|ref|YP_003925725.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272223|emb|CAD65131.1| formylmethionine deformylase [Lactobacillus plantarum WCFS1] gi|254046447|gb|ACT63240.1| peptide deformylase [Lactobacillus plantarum JDM1] gi|308047088|gb|ADN99631.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 136 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + +P+V P + S P + ++ ++L+ ++ + +G+AA IGV +++ Sbjct: 1 MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ L A INPKII + + R ITV+Y D + Sbjct: 57 VVQLGPFAIA-----MINPKIIDHHGTYETKEGCLS--LPGERPTSRYHQITVKYKDQHF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A +QHELDH G L Sbjct: 110 KPQQQRFNDFTAQIIQHELDHCAGKLI 136 >gi|302672051|ref|YP_003832011.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] gi|302396524|gb|ADL35429.1| polypeptide deformylase Def2 [Butyrivibrio proteoclasticus B316] Length = 136 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + K +V DP L++ S P + + +I ++L+ + + +AA IGV R+ Sbjct: 1 MVKQIVK--DPFFLQQKSEPATEAD---KQVIQDLLDTLRANQDRCVGMAANMIGVKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + P F E + R I V Y+D + Sbjct: 56 IVVAMG-------PFHFAMVNPEITKKSGEYQTEESCLSLEGVRPCTRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q A +QHE+DH GIL Sbjct: 109 FKPQHGKYKDFTAQIIQHEIDHFEGILI 136 >gi|148972164|ref|ZP_01811404.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] gi|148872760|gb|EDL71126.1| peptide deformylase [Leptolyngbya valderiana BDU 20041] Length = 118 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 48/89 (53%) Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 HA P +NP+I+ SDD + EGCLS+P R V R I V Y+D + + Q Sbjct: 10 YPHAPMLEPTAMVNPRILHCSDDRVLGWEGCLSVPGRRGWVPRYREIEVEYLDRSGRLQR 69 Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSR 152 +A QHE DHLNG++F+D + + Sbjct: 70 RVLKDFVARIFQHEFDHLNGLVFLDRVEK 98 >gi|157873892|ref|XP_001685446.1| polypeptide deformylase-like protein [Leishmania major strain Friedlin] gi|68128518|emb|CAJ08650.1| putative polypeptide deformylase-like protein [Leishmania major strain Friedlin] Length = 271 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI------NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 + + +P R ++RP+ + + M+ + ++ ++ + +A + Sbjct: 49 ALRRVACYPH---RSMTRPVMPVPTSQILSPVFMSSLMDLNQLATGLHCLSFSAPKAHWD 105 Query: 56 YRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +++I V E C+S A V R IT Sbjct: 106 AAVILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRITC 165 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 D + H++ DG+ A CL HELDHL G Sbjct: 166 SGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|212211904|ref|YP_002302840.1| peptide deformylase [Coxiella burnetii CbuG_Q212] gi|212010314|gb|ACJ17695.1| peptide deformylase [Coxiella burnetii CbuG_Q212] Length = 213 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGI-GLAAVQIGVLYRLVVIDLQ-----D 65 +L +V+ +E + I+ M S G G AA Q+G+ R+++++ Sbjct: 17 VLYKVASEVEIPLTKTTKEKIEAMRVFYKSFQGKAGFAAPQVGLSERIILVEQHLFDTTM 76 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 77 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHMELTAWLYHSDTEALS 136 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + QHE+DHL G +++D Sbjct: 137 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 168 >gi|182419964|ref|ZP_02951200.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237665638|ref|ZP_04525626.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376215|gb|EDT73800.1| polypeptide deformylase [Clostridium butyricum 5521] gi|237658585|gb|EEP56137.1| polypeptide deformylase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 137 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59 + + +V D L + + K + + +ID+M++ + I LA+ QIG R++ Sbjct: 1 MVREIVKDNDK-LTQKAVEATKKD---LYIIDDMIDTAKANRDICVGLASNQIGENVRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + D +NPKIIT S +E CLS + R + I V Y D N Sbjct: 57 VALMGDEFIP-----LVNPKIITHSVATYEDEEACLSHEGTK-KATRYSSIEVEYRDRNF 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE+DH GIL Sbjct: 111 KKRKNIFKGFVAQIIQHEMDHCEGILI 137 >gi|118096630|ref|XP_001232975.1| PREDICTED: similar to Component of oligomeric golgi complex 8 [Gallus gallus] Length = 677 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 SI + A V R V +D N A G A +QHE+DHL+G+LFID + Sbjct: 607 ASIRGFAAGVPRRGAGHVSGVDENGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMDS 664 >gi|184155771|ref|YP_001844111.1| peptide deformylase [Lactobacillus fermentum IFO 3956] gi|183227115|dbj|BAG27631.1| polypeptide deformylase [Lactobacillus fermentum IFO 3956] Length = 136 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + P+ +L++ +RP + L + ++ + IG+AA IG ++ Sbjct: 1 MIYPI-NHDQQVLQQPARPATSAD---RQLAEALVATLTAHQDHCIGMAANMIGFPVSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + L +NP+++ + + + R ITV Y D Sbjct: 57 AVSLGPVNVA-----MLNPRLVKKAHPYQTKEGCLSLTGTRS--TTRFERITVAYQDLTG 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + GL A +QHE DHL GIL Sbjct: 110 AQKELELTGLAAQAVQHECDHLRGILI 136 >gi|291542377|emb|CBL15487.1| N-formylmethionyl-tRNA deformylase [Ruminococcus bromii L2-63] Length = 136 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + + +V DP L+R S + + + ++L+ + +G+AA IGV R+ Sbjct: 1 MVREIVH--DPMFLQRKSEDATQAD---LQTAQDLLDTLRANFDRCVGMAANMIGVAKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + I+ NP+II+ +F + D R I V+Y + N Sbjct: 56 IAINDNGKYLV-----MFNPEIISKFGEFETEEGCLS--LDGERKTVRYKTIKVKYFNEN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DH NGIL Sbjct: 109 FKQIKRSFSDFTAQIIQHEIDHCNGILI 136 >gi|319946366|ref|ZP_08020604.1| peptide deformylase [Streptococcus australis ATCC 700641] gi|319747519|gb|EFV99774.1| peptide deformylase [Streptococcus australis ATCC 700641] Length = 148 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYR 57 M++K ++ DP L ++S K + + L ++ + + + +AA IGV R Sbjct: 12 MMEKAIMK--DPFFLSQISEEATKED---LYLAQDLQDTLRAHQDSCVGMAANMIGVRKR 66 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++I P+V NP ++ + + + R I V Y D Sbjct: 67 VIIIQF-----GLMPLVLFNPVLVKKEGVYETEEGCLSLAGSRK--TSRFEKIQVSYRDM 119 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q+I +G A QHELDHL GIL Sbjct: 120 NWKPQLISLEGFAAQICQHELDHLEGILI 148 >gi|261367618|ref|ZP_05980501.1| peptide deformylase [Subdoligranulum variabile DSM 15176] gi|282570406|gb|EFB75941.1| peptide deformylase [Subdoligranulum variabile DSM 15176] Length = 136 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + + D I L + + P + + ++LE + +G+AA IGV R+ Sbjct: 1 MIREICK--DVIFLAQKAEPATPEDLPV---AADLLETLEYHKDGCVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + NP+I+ S + + VKR I V++ + Sbjct: 56 IAFDNEGKYQV-----MFNPEILRRSGPYEAEEGCLSLTGVRP--VKRWKTIKVQWQNEK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q +I G A +QHE+DH GI+ Sbjct: 109 FQQRIKNFTGWTAEIIQHEIDHCEGIII 136 >gi|225376046|ref|ZP_03753267.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] gi|225212066|gb|EEG94420.1| hypothetical protein ROSEINA2194_01683 [Roseburia inulinivorans DSM 16841] Length = 136 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K + DP L + S + + +I ++L+ + + +G+AA IGV + Sbjct: 1 MIKKITR--DPMFLAQKSVDATEAD---KQVISDLLDTLRANLDHCVGMAANMIGVSKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + +IT +EGCLS+ R R I V Y+D N Sbjct: 56 IVVAAGPFQFA------MINPVITKKMGTFQTEEGCLSMDGVR-PCTRYKEIEVDYLDTN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGI+ Sbjct: 109 FKKQHGKYTGWTAQIIQHEIDHCNGIVI 136 >gi|154500866|ref|ZP_02038904.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] gi|150270366|gb|EDM97692.1| hypothetical protein BACCAP_04551 [Bacteroides capillosus ATCC 29799] Length = 136 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + + + + L + + P + + + ++LE + +G+AA IGV R++ Sbjct: 1 MIRDICKD-ETFLAQKAEPATPDD---IQIAADLLETLEHHKDGCVGMAANMIGVNKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 D + MV NP+I+ S + + KR I VR+ + + Sbjct: 57 AFDNEGTY-----MVMFNPEIVKKSGPYDAEEGCLS--LTGIRPAKRWQSIKVRWQNEHF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q ++ G A +QHELDH GI+ Sbjct: 110 QERLKAFTGWTAQIIQHELDHCEGIII 136 >gi|116335077|ref|YP_802572.1| peptide deformylase [Candidatus Carsonella ruddii PV] gi|116235358|dbj|BAF35206.1| peptide deformylase [Candidatus Carsonella ruddii PV] Length = 154 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 82/146 (56%), Gaps = 3/146 (2%) Query: 5 PLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ F D +R + ++ N +I+ +I M+ +MY +GIG+++ QI + I Sbjct: 3 KILNFKDKRIRLFFKNVKVSFNYNILYIIKQMIILMYKNNGIGISSNQINCFKNI--IIC 60 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + +K P++ INPKI+ + + ++ EGCLSI ++ V R + ++Y + + + Sbjct: 61 DVNFKKKKPLIMINPKILINNKNHTLGMEGCLSIKNFLISVLRFDKVYIKYFNIYNKKKK 120 Query: 124 IYADGLLATCLQHELDHLNGILFIDH 149 +G+ + C+QHE+DHLN L +D+ Sbjct: 121 KIFNGIKSRCIQHEIDHLNSKLILDY 146 >gi|167757205|ref|ZP_02429332.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|237735710|ref|ZP_04566191.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167703380|gb|EDS17959.1| hypothetical protein CLORAM_02755 [Clostridium ramosum DSM 1402] gi|229381455|gb|EEO31546.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 137 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + + +V D L + S P K + + + ++L+ + + +G+AA IG+ + Sbjct: 1 MIREIVS--DQFRLSQKSLPATKEDLPV---VQDLLDTIIAHATGCVGMAANMIGINKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++++ + +NP+II +EGCLS + KR I V Y D + Sbjct: 56 IIVNDDGNYLV-----MLNPEIIKTMGRLYETEEGCLSHIGVK-KTKRYEKIKVAYYDVD 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +I A +QHE+DH NGIL Sbjct: 110 FKKKIKTFSNYTAQIIQHEIDHCNGILI 137 >gi|326511637|dbj|BAJ91963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326514272|dbj|BAJ92286.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 121 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 44/80 (55%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V INPK+ S + + EGCLS+ YRA V+R + V +D N + + A G A Sbjct: 19 WVVINPKLKKTSKRTACFYEGCLSVDGYRAVVERHLDVEVSGLDRNGRPMKVEASGWQAR 78 Query: 133 CLQHELDHLNGILFIDHLSR 152 LQHE DHL G L++D + Sbjct: 79 ILQHECDHLEGTLYVDKMVP 98 >gi|268320251|ref|YP_003293907.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] gi|262398626|emb|CAX67640.1| polypeptide deformylase [Lactobacillus johnsonii FI9785] Length = 137 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 11/147 (7%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP+V D + L+ S P K + + + L + GLAA IGV R++ Sbjct: 1 MAVKPIVH--DELSLKFKSLPATKQDLGAATDLKDTL-LANKDRAAGLAANMIGVQKRII 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP I+ +D + Y+ + +R ITV+Y + N Sbjct: 58 ALFVGP-----LPIVMLNPIIVAQNDKYLAYEGCLSLTGERP--TERYKNITVKYQNENL 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NGIL Sbjct: 111 ETRQQSFSDFTAEVIQHEIDHCNGILI 137 >gi|42560770|ref|NP_975221.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492266|emb|CAE76863.1| Peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320698|gb|ADK69341.1| peptide deformylase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 200 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96 Y +GLAA QIGV + + Q ++ IN K+I+ S + + Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 + V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNYHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|213027380|ref|ZP_03341827.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 44 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 +LA C+QHE+DHL G LFID+LS LK+ I +K+ KL +L Sbjct: 1 MLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 40 >gi|207108487|ref|ZP_03242649.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 77 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 45/77 (58%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++ Sbjct: 1 MALLEIIHYPSKILRTISKEVISFDAKLHQQLDDMHETMIASEGIGLAAIQVGLPLRMLI 60 Query: 61 IDLQDHAHRKNPMVFIN 77 I+L ++ + Sbjct: 61 INLPQEDGVQHKEDCLE 77 >gi|257064918|ref|YP_003144590.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] gi|256792571|gb|ACV23241.1| N-formylmethionyl-tRNA deformylase [Slackia heliotrinireducens DSM 20476] Length = 136 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P+V + + LR S P + + +L+D + +S + +G+AA IGV R++ Sbjct: 1 MIRPVVK--NELALRAPSSPATVADRSVGQDLMDTLR--FHSHECVGMAANMIGVAKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V D NP+I S+ + + A R I V + D Sbjct: 57 VFDDAGTHRL-----MYNPEITAKSEPYQTEEGCLSLTGRRPA--TRYRRIEVTFRDERF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +G A +QHE+DH NGI+ Sbjct: 110 ASRTEAFEGWTAQIIQHEIDHCNGIVI 136 >gi|83319871|ref|YP_424193.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283757|gb|ABC01689.1| polypeptide deformylase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 200 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96 Y +GLAA QIGV + + Q ++ IN K+I+ S + + Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH GIL+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGILYYDHINK 186 >gi|227891784|ref|ZP_04009589.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] gi|227866443|gb|EEJ73864.1| peptide deformylase [Lactobacillus salivarius ATCC 11741] Length = 136 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + + IL + S P K + I +L+D + + +G+AA IG ++ Sbjct: 1 MIRDI-NHDVKILSKKSTPTSKNDIAIVQDLVDTL--TYHRDHCVGMAANMIGKNKCIIA 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + INP I S +S + + R I V Y++ + Q Sbjct: 58 CQFGP-----LIVAMINPVITKKSQKYSTSEGCLSLTGERE--TTRFNKIEVSYLNQSFQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 +G A +QHE+DH NGIL Sbjct: 111 KVHATFEGFNAQIIQHEIDHCNGILI 136 >gi|169838490|ref|ZP_02871678.1| hypothetical protein cdivTM_15541 [candidate division TM7 single-cell isolate TM7a] Length = 118 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + + I A+G LA LQHE+DH NGI+FIDH+ + K+D K Sbjct: 41 RTDGKEIRIKAEGFLARVLQHEIDHTNGIVFIDHI-KNKKDAFYK 84 >gi|29655164|ref|NP_820856.1| peptide deformylase [Coxiella burnetii RSA 493] gi|39931092|sp|Q83AK6|DEF2_COXBU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName: Full=Polypeptide deformylase 2 gi|29542436|gb|AAO91370.1| peptide deformylase [Coxiella burnetii RSA 493] Length = 209 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 13/152 (8%) Query: 13 ILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAA-VQIGVLYRLVVIDLQ-----D 65 +L +V+ +E + I+ M S G A Q+G+ R+++++ Sbjct: 13 VLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQGKAGFAVPQVGLSERIILVEQHLFDTTM 72 Query: 66 HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA------ 119 P + +NP SD EGCLS+P V+R + + ++ Sbjct: 73 AEETDEPTILVNPSWRPISDKKEWDIEGCLSVPGKVGVVERYVHVELTAWLYHSDTEALS 132 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 + + Y + QHE+DHL G +++D Sbjct: 133 KIKREYHREYSSVLWQHEIDHLEGKIYVDKAK 164 >gi|260221951|emb|CBA31028.1| hypothetical protein Csp_C26500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 48 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 33/45 (73%) Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + ADGLLA C+QHE+DHL G +F+++LS LKR+ I KM K + Sbjct: 1 MEADGLLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKAKRE 45 >gi|326927579|ref|XP_003209969.1| PREDICTED: conserved oligomeric Golgi complex subunit 8-like, partial [Meleagris gallopavo] Length = 600 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 N A G A +QHE+DHL+G+LFID + Sbjct: 553 NGDPVSWEATGWAARIVQHEMDHLDGVLFIDRMDS 587 >gi|227524969|ref|ZP_03955018.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] gi|227087881|gb|EEI23193.1| peptide deformylase [Lactobacillus hilgardii ATCC 8290] Length = 136 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P L + ++P ++ +I ++L+ +++ +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + R P+ +NP+I+ S F+ + + + R ITV Y+D N Sbjct: 56 IVVQM-----RMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 FRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|331703218|ref|YP_004399905.1| peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801773|emb|CBW53926.1| Peptide deformylase 2 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 200 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96 Y +GLAA QIGV + + Q ++ IN K+I+ S + + Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|154484915|ref|ZP_02027363.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] gi|149733868|gb|EDM49987.1| hypothetical protein EUBVEN_02633 [Eubacterium ventriosum ATCC 27560] Length = 136 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59 + K +V I R ++P K + ++ ++++ + I +AA IGV ++ Sbjct: 1 MVKKIVK-GKQIFARKAQPATKAD---KQVVTDLMDTLRENREICVGMAANMIGVNKSII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ +IT +EGCLS+ R + R I V Y++ N Sbjct: 57 VVAAGPFQFAMV------NPVITKKSGEYTTEEGCLSLDGVR-NCIRYKEIEVDYLNENF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NG++ Sbjct: 110 EPKHGKFSGYTAQIIQHEVDHCNGVVI 136 >gi|322494221|emb|CBZ29518.1| putative polypeptide deformylase-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 271 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI------NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVL 55 + + +P R ++RP+ + + M+ + ++ ++ + +A + Sbjct: 49 ALRRVACYPH---RSMTRPVMPVPMSQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWD 105 Query: 56 YRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112 +++I V E C+S A V R IT Sbjct: 106 AAVILIKGNPDEKEYEVWVNPLVPGYDDRDAVAPMYGMWENCISCGTATAWVVRPQRITC 165 Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 D + H++ DG+ A CL HELDHL G Sbjct: 166 SGYDEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|290977842|ref|XP_002671646.1| predicted protein [Naegleria gruberi] gi|284085216|gb|EFC38902.1| predicted protein [Naegleria gruberi] Length = 297 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 40/84 (47%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 +I+PKI+ S + EGCLS + + RS I V Y++ Q DG A Sbjct: 193 YIDPKIVDKSVEMEREVEGCLSFKNEYLFLMRSKEIEVEYINMFGVKQRKTLDGFSARVF 252 Query: 135 QHELDHLNGILFIDHLSRLKRDMI 158 QHE DHL GI D + K+D Sbjct: 253 QHEFDHLEGINMFDRVVDKKKDRY 276 >gi|256384123|gb|ACU78693.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384955|gb|ACU79524.1| peptide deformylase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455689|gb|ADH21924.1| peptide deformylase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 200 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96 Y +GLAA QIGV + + Q ++ IN K+I+ S + + Sbjct: 70 YLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|330952314|gb|EGH52574.1| peptide deformylase [Pseudomonas syringae Cit 7] Length = 45 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44 M ++ FPD LR +++P+ ++ I L+D+M E MY G Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPG 44 >gi|94502278|ref|ZP_01308760.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451171|gb|EAT14114.1| polypeptide deformylase [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 117 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 FINP II + +EGCLSIP+ ++KR I + Y D N + + +GLL+ + Sbjct: 2 FINPIIIKKYGYNLISKEGCLSIPNIIENIKRKNNIIIEYYDENWKKYKQHFNGLLSIII 61 Query: 135 QHELDHLNGILFIDHLSRLKRDMITK---------KMSKLVQL 168 QHE DH+ G LFID++ LK +I K K+ KL +L Sbjct: 62 QHEYDHIEGKLFIDNIFILKNILIKKNFNLNYNLYKLYKLSKL 104 >gi|291457332|ref|ZP_06596722.1| peptide deformylase [Bifidobacterium breve DSM 20213] gi|291381167|gb|EFE88685.1| peptide deformylase [Bifidobacterium breve DSM 20213] Length = 139 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 6/145 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 +++P++ LR S P E + M + + LE + +G+AA IGV R+ I Sbjct: 1 MQRPIMTS-RSFLRTPSEPAEPSDEAAMQDLVDTLEANR-SRCVGMAANMIGVGKRI--I 56 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 D V +NP I F + + R R I V Y D + Sbjct: 57 AFVDEDLGGRVTVMLNPVITASDGAFDTQEGCLSLAGERR--TLRYRRIEVDYEDRRFRA 114 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + G A +QHE+DH NGI+ Sbjct: 115 RHATFTGWTAQIIQHEVDHCNGIII 139 >gi|300768769|ref|ZP_07078665.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493726|gb|EFK28898.1| peptide deformylase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 141 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + +P+V P + S P + ++ ++L+ ++ + +G+AA IGV +++ Sbjct: 6 MIRPIVHDPAAL----SVPADLATPADTQVLTDLLDTLAAHTDNCVGMAANMIGVNKQII 61 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+ L A INPKII + + R ITV+Y D + Sbjct: 62 VVQLGPFAIA-----MINPKIIDHHGTYETKEGCLS--LPGERPTSRYHQITVKYKDQHF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A +QHELDH G L Sbjct: 115 KPQQQRFNDFTAQIIQHELDHCAGKLI 141 >gi|322501785|emb|CBZ36867.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 271 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 6/152 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + +P + R P+ ++ M+ + ++ ++ + +A + + Sbjct: 49 ALRRVACYPHRSMTRPVMPVPASQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWDAAV 108 Query: 59 VVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++I V E C+S A V R +T Sbjct: 109 ILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGY 168 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 D + H++ DG+ A CL HELDHL G Sbjct: 169 DEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|227511983|ref|ZP_03942032.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] gi|227084791|gb|EEI20103.1| peptide deformylase [Lactobacillus buchneri ATCC 11577] Length = 136 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTD--GIGLAAVQIGVLYRL 58 + KP+ +P L + ++P ++ +I ++L+ +++ +G+AA IGV R+ Sbjct: 1 MIKPINH--NPLTLSQRAQPATLADT---QIITDLLDTLHANTQICVGMAANMIGVNKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + P+ +NP+I+ S F+ + + + R ITV Y+D N Sbjct: 56 IVVQM-----GMLPVALVNPEIVEKSVPFATKEGCLS--LEGQRSTTRYKEITVTYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH GIL Sbjct: 109 LRSHRQGFSDWIAQIIQHEVDHCEGILI 136 >gi|146096471|ref|XP_001467816.1| polypeptide deformylase-like protein [Leishmania infantum JPCM5] gi|134072182|emb|CAM70883.1| putative polypeptide deformylase-like protein [Leishmania infantum JPCM5] Length = 271 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 6/152 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + + +P + R P+ ++ M+ + ++ ++ + +A + + Sbjct: 49 ALRRVACYPHRSMTRPVMPVPASQILSPVFMSSLMDLNQLATDLHCLSFSAPKAHWDAAV 108 Query: 59 VVIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 ++I V E C+S A V R +T Sbjct: 109 ILIKSNPDETEYEVWVNPSVPGYDDRNAVAPMYGMWENCISCGTATAWVVRPQRVTCSGY 168 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 D + H++ DG+ A CL HELDHL G Sbjct: 169 DEHGNHKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|301301079|ref|ZP_07207239.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851349|gb|EFK79073.1| peptide deformylase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 136 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + + + IL + S P K + + ++ ++++ + +G+AA IG ++ Sbjct: 1 MIRDI-NHDVKILSKKSTPASKND---IAIVQDLVDTLNYHRDHCVGMAANMIGKNKCII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + INP I S +S + + R I V Y++ + Sbjct: 57 ACQFGP-----LIVAMINPVITKKSQKYSTSEGCLSLTGERE--TTRFNKIKVSYLNQSF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q +G A +QHE+DH NGIL Sbjct: 110 QKVHATFEGFNAQIIQHEIDHCNGILI 136 >gi|166030770|ref|ZP_02233599.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] gi|166029352|gb|EDR48109.1| hypothetical protein DORFOR_00444 [Dorea formicigenerans ATCC 27755] Length = 136 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 + + +V +L + S P + + + ++L+ + +G+AA IGV R Sbjct: 1 MVREVV---HDVLFLGQKSEPATQAD---KQVAIDLLDTLKAHEEGCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ +++ + NP+I+ S + + I R I + Y D Sbjct: 55 IIAVNM-----GFMNVAMFNPRIVKKSGSYQTEEGCLSLIGVRP--CTRYQEIELEYQDM 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G +A +QHE+DH NGI+ Sbjct: 108 NWKKQRQKYTGWIAQIIQHEVDHCNGIII 136 >gi|313665134|ref|YP_004047005.1| peptide deformylase [Mycoplasma leachii PG50] gi|312949522|gb|ADR24118.1| peptide deformylase [Mycoplasma leachii PG50] Length = 200 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLS 96 Y +GLAA QIGV + + Q ++ IN K+I+ S + + Sbjct: 70 YLRPAVGLAAPQIGVNKDIFYVRFQLDNNKIEQYAMINTKLISTSTQIACLKNGEGCLSV 129 Query: 97 IPDYRADVKRSAFITVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSR 152 D+ V R I V+ D + + A QHE+DH G+L+ DH+++ Sbjct: 130 DNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNYQAIVFQHEMDHNIGVLYYDHINK 186 >gi|313900498|ref|ZP_07833991.1| peptide deformylase [Clostridium sp. HGF2] gi|312954560|gb|EFR36235.1| peptide deformylase [Clostridium sp. HGF2] Length = 137 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 + K +V D L SR E D + + ++ + ++ +G+AA IGVL R++ Sbjct: 1 MIKEIVK--DTFLL--SRRCEAATLDDLQTVQDLQDTLQAHADHCVGMAANMIGVLKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V +NP II D +EGCL + R I V YMDC Sbjct: 57 VFQDGGSYVS-----MLNPVIIKTGDKRYTAEEGCLCHSTQK-KALRYEKIKVSYMDCCG 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + +I +G A +QHELDH +GIL Sbjct: 111 KKKIKTYEGFCAQIIQHELDHCDGILI 137 >gi|291390393|ref|XP_002711708.1| PREDICTED: peptide deformylase-like [Oryctolagus cuniculus] Length = 126 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 39/96 (40%) Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R V +NP + + EGC S+ + A V R + + +D Sbjct: 18 RSCTTHELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLD 77 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 + + A G A +QHE+DHL G LFID + Sbjct: 78 PRGEQVVWPASGWTARIIQHEMDHLQGCLFIDKMDS 113 >gi|50365386|ref|YP_053811.1| polypeptide deformylase [Mesoplasma florum L1] gi|50363942|gb|AAT75927.1| polypeptide deformylase [Mesoplasma florum L1] Length = 200 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 22/162 (13%) Query: 12 PILRRVSRPIEKI-----NSDI--MNLIDNMLEVM-----------YSTDGIGLAAVQIG 53 ++R VS + + + ++ LID ++ Y +GLAA QIG Sbjct: 25 EVIRSVSTKVADVNNLSKDEELTMKKLIDFVVASQDEEFNYEGKEDYLRPAVGLAAPQIG 84 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFI 110 V + I ++ IN + + S + D V RS I Sbjct: 85 VNKDMFYIRFNLPNNQIEEYAMINTEYLAKSSRMAALEEGEGCLSVDEDKHGIVPRSWII 144 Query: 111 TVRYMDC-NAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 +V+ D + + + QHE+DH G L+ DH++ Sbjct: 145 SVKGFDWLKKEWVELKLKDYRSIVFQHEMDHNIGNLYYDHIN 186 >gi|289676938|ref|ZP_06497828.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 100 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 33/85 (38%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 INP I EGCLS+P R V R I D Q A G A + Sbjct: 3 LINPLITPLGSTLEEGWEGCLSVPGLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARVV 62 Query: 135 QHELDHLNGILFIDHLSRLKRDMIT 159 QHE DHL G L+ ++ + Sbjct: 63 QHECDHLIGRLYPSRITDFSKFGFM 87 >gi|257790516|ref|YP_003181122.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474413|gb|ACV54733.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 136 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +P++ + +L+R S P + + I + + LE + +G+AA IG L R++V Sbjct: 1 MIRPIMR--NELVLQRASAPATEADLPIAQDLLDTLEAHRHS-CVGMAANMIGELKRIIV 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D +NP+II+ + + + A R I V Y D + Sbjct: 58 FDDGGSHVA-----MLNPEIISCAGTYEAEEGCLSLSGTRSA--TRYRTIKVSYQDLAMK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 ++ G A +QHE+DH NG+L Sbjct: 111 PRVKTFTGFTAQIIQHEIDHCNGVLI 136 >gi|284048313|ref|YP_003398652.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] gi|283952534|gb|ADB47337.1| formylmethionine deformylase [Acidaminococcus fermentans DSM 20731] Length = 136 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + ++ D L++ S P ++ + ++LE + + +G+AA IGV + Sbjct: 1 MIREIMR--DEYFLQQKSLPASPLDKPV---AIDLLETLKAHRDECVGMAANMIGVAKCI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V++ MV NP II + + + + R I V + D + Sbjct: 56 IVVN-----LGLMDMVMFNPTIIKQEGPYETSEGCLSLSGERK--TTRYRKIQVEFQDMD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q + G A +QHE+DHL GIL Sbjct: 109 FKKQTLEFTGFPAQIIQHEVDHLAGILI 136 >gi|238925751|ref|YP_002939268.1| peptide deformylase [Eubacterium rectale ATCC 33656] gi|238877427|gb|ACR77134.1| peptide deformylase [Eubacterium rectale ATCC 33656] Length = 136 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K ++ DP L + S + + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKKIMR--DPLFLAQKSEDATEDD---KQVVTDLLDTLKANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ P F + + E D R I V Y+D N Sbjct: 56 IVV-------AAGPFQFAMINPVITGKSGAFQTEEGCLSLDGVRPCTRYKEIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NG++ Sbjct: 109 FKKKHGKYTGWTAQIIQHEVDHCNGVVI 136 >gi|13507984|ref|NP_109933.1| peptide deformylase [Mycoplasma pneumoniae M129] gi|2499923|sp|P75527|DEF_MYCPN RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|1674288|gb|AAB96235.1| polypeptide deformylase [Mycoplasma pneumoniae M129] Length = 216 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 16 RVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++P++ ++ ++ I M+ E GIG+AA QIG ++ I L Sbjct: 43 EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 102 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119 D ++ + INPKII S + S + ++ V R +IT+ D Sbjct: 103 MDG-GVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 161 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I A GL CLQHE DHL G + ++ L Sbjct: 162 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPL 195 >gi|302519737|ref|ZP_07272079.1| formylmethionine deformylase [Streptomyces sp. SPB78] gi|302428632|gb|EFL00448.1| formylmethionine deformylase [Streptomyces sp. SPB78] Length = 403 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 18/162 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48 M + +++ P L + P+ + + +I ++D +L G+GL+ Sbjct: 229 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 285 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 A QIGV ++ A +NP++I S + + E C P R R Sbjct: 286 APQIGVPRAAALVQPPWGAPAVT---LLNPRVIAGSRETAEEYESCPGRPGPRTPTSRPN 342 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ITVR LA + HE+DHL G+L L Sbjct: 343 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPRL 384 >gi|301633662|gb|ADK87216.1| peptide deformylase [Mycoplasma pneumoniae FH] Length = 193 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%) Query: 16 RVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++P++ ++ ++ I M+ E GIG+AA QIG ++ I L Sbjct: 20 EPTKPVQFPLDQASLDCIAKMMAYVDASYNGDAEKYGIIPGIGIAANQIGYWKQMFYIHL 79 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDC-NA 119 D ++ + INPKII S + S + ++ V R +IT+ D Sbjct: 80 MDG-GVEHKCLLINPKIINLSANKSFLKSGEGCLSVPKMHQGYVIRHEWITITGFDWLQQ 138 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 + I A GL CLQHE DHL G + ++ L Sbjct: 139 KEITITATGLFGMCLQHEFDHLQGRFYYHRINPL 172 >gi|323353371|ref|ZP_08087904.1| peptide deformylase [Streptococcus sanguinis VMC66] gi|322121317|gb|EFX93080.1| peptide deformylase [Streptococcus sanguinis VMC66] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR+ S E+ + + + L ++ + + + IGLAA +GV R+++ Sbjct: 12 LRQPS---EQASREDLYLAQDLQDTLQANRENCIGLAANMVGVRKRVIIFLY-----GLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P+V NP + + S + + +R ITV Y+D N Q Q + GL A Sbjct: 64 PVVMFNPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|291551092|emb|CBL27354.1| N-formylmethionyl-tRNA deformylase [Ruminococcus torques L2-14] Length = 136 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57 + KP++ I L + S + + + ++L+ + +G+AA IGV R Sbjct: 1 MIKPIMR---DIFFLNQKSELATEAD---KQVAIDLLDTLKANEAGCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ +++ NPKI+ + + + D +R I V Y D Sbjct: 55 IIAVNMGSFNIA-----MFNPKIVKRTGAYETEEGCLS--LDGVRSCRRYQEIEVEYQDM 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G A +QHE+DH +GIL Sbjct: 108 NFKKKREKYSGWTAQIIQHEIDHCDGILI 136 >gi|224542289|ref|ZP_03682828.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] gi|224524831|gb|EEF93936.1| hypothetical protein CATMIT_01464 [Catenibacterium mitsuokai DSM 15897] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K +V + L +V+ K + I + + L+ + + +G+A IG +++ Sbjct: 1 MIKEIVKD-NFFLSQVAEKATKEDLYIGTDLKDTLQA-HLHECVGMAGNMIGYNKAVIIF 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + V NP+II S ++ +EGCLS + VKR I V Y D + + Sbjct: 59 LEDEKM-----HVMYNPEIIKTSGNYHECEEGCLSHVGQK-SVKRYETIKVSYFDESFKK 112 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 +I G A +QHE DHL GIL Sbjct: 113 KIKTYTGFTAQIIQHECDHLKGILI 137 >gi|239621599|ref|ZP_04664630.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515474|gb|EEQ55341.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 141 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ ++ P L + S E +D+ + ++ + + +G+AA IGV R+ Sbjct: 1 MQREIMTS-IPFLSQPSVEAENTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGVPKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP I + + + R I V Y D Sbjct: 58 -IAFVDEDLGGRITVMFNPHITAQDGAYDASEGCLSLNGERH--TLRYQRIEVTYEDRRF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH +G++ Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141 >gi|322386870|ref|ZP_08060494.1| peptide deformylase [Streptococcus cristatus ATCC 51100] gi|321269152|gb|EFX52088.1| peptide deformylase [Streptococcus cristatus ATCC 51100] Length = 136 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 ++K +V DP L++ S P K++ + L ++ + + +GLAA IG R+ Sbjct: 1 MQKSIVK--DPFFLQQKSVPATKVD---LFLAQDLQDTLLAHRESCVGLAANMIGSQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ PMV NP +I S + + R ITV Y+D N Sbjct: 56 IIFMY-----VMLPMVMFNPVLIQKSGPYETEEGCLSLAGSRP--TIRYQKITVEYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + I + A QHELDHL GIL Sbjct: 109 WLKKTITLEDFPAQICQHELDHLEGILI 136 >gi|322372342|ref|ZP_08046878.1| peptide deformylase [Streptococcus sp. C150] gi|321277384|gb|EFX54453.1| peptide deformylase [Streptococcus sp. C150] Length = 136 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP+V D L + S K + + + + LE Y +G+AA IGV R+++ Sbjct: 1 MIKPIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLE-FYKDACVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP +++ S F + + +R I V Y+D Sbjct: 58 VNI-----GFVNLVMFNPVLVSKSSLFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+LA +QHELDHL GI+ Sbjct: 111 PKQLSFSGMLAQIIQHELDHLEGIII 136 >gi|293365837|ref|ZP_06612542.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307703294|ref|ZP_07640239.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|322375601|ref|ZP_08050113.1| peptide deformylase [Streptococcus sp. C300] gi|291315661|gb|EFE56109.1| peptide deformylase [Streptococcus oralis ATCC 35037] gi|307623160|gb|EFO02152.1| polypeptide deformylase family protein [Streptococcus oralis ATCC 35037] gi|321279309|gb|EFX56350.1| peptide deformylase [Streptococcus sp. C300] Length = 136 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 ++K +V D L +VS+P + + + L ++ + +GLAA IGV R+ Sbjct: 1 MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + PMV NP ++++ + + R ITV Y D Sbjct: 56 IIFN-----LGLVPMVMFNPVLLSYIGPYETEEGCLSLTGVRS--TTRYETITVSYRDSK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 109 WQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|291524049|emb|CBK89636.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale DSM 17629] gi|291527891|emb|CBK93477.1| N-formylmethionyl-tRNA deformylase [Eubacterium rectale M104/1] Length = 136 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K ++ DP L + S + + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MVKKIMR--DPLFLAQKSVDATEDD---KQVVTDLLDTLRANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ P F + + E D R I V Y+D N Sbjct: 56 IVV-------AAGPFQFAMINPVITGKSGAFQTEEGCLSLDGVRPCTRYKEIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NG++ Sbjct: 109 FKKKHGKYTGWTAQIIQHEVDHCNGVVI 136 >gi|26554017|ref|NP_757951.1| peptide deformylase [Mycoplasma penetrans HF-2] gi|32363151|sp|Q8EVJ8|DEF_MYCPE RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma penetrans HF-2] Length = 186 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 15/161 (9%) Query: 6 LVIFPDPILRRVSRPIE-KINSDIMNLIDNML-----------EVMYSTDGIGLAAVQIG 53 +V +P++ + + + + ++I ML + GIG+AA+Q+G Sbjct: 12 IVYDNNPVMHKPIEDVVFPLTKEDEHVISQMLSYVDASYEGEADKYDIRAGIGIAAIQLG 71 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFS--VYQEGCLSIPDYRADVKRSAFIT 111 +++ I L D ++ I + + D++ R + + Sbjct: 72 CPKKIIYIHLDDKNGEHKYLMANPKIIKESTSKMYLKNGEGCLSVKKDHKGLSIRKSIVW 131 Query: 112 VRYMD-CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151 V+ +D + + A LLA C QHE+DH N + + ++ Sbjct: 132 VKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRIN 172 >gi|218283358|ref|ZP_03489392.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] gi|218215912|gb|EEC89450.1| hypothetical protein EUBIFOR_01981 [Eubacterium biforme DSM 3989] Length = 145 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + KP++ + L S P K+++ + + + L+ YS +G+AA IGV +++ Sbjct: 10 MIKPIMKD-EAFLAIKSAPATKMDTQVAQDLKDTLQA-YSDQCVGMAANMIGVSKNIIIF 67 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 ++ + + IT +EGCLS+ R + R ITV Y D + + Sbjct: 68 AIEPAQ------IVMYNPKITKKSRPYKVKEGCLSLEGER-NTTRYENITVEYQDESFKK 120 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 G +A +QHE+DH NGI+ Sbjct: 121 CKQSYSGFVAQIIQHEIDHCNGIII 145 >gi|255018922|ref|ZP_05291048.1| peptide deformylase [Listeria monocytogenes FSL F2-515] Length = 65 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153 V RS +T+ D N + G A +QHE+DHLNGI+F DH+++ Sbjct: 1 GYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKE 52 >gi|270292421|ref|ZP_06198632.1| peptide deformylase [Streptococcus sp. M143] gi|306824859|ref|ZP_07458203.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|270278400|gb|EFA24246.1| peptide deformylase [Streptococcus sp. M143] gi|304433070|gb|EFM36042.1| peptide deformylase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 136 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 ++K +V D L +VS+P + + + L ++ + +GLAA IGV R+ Sbjct: 1 MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + PMV NP ++++ + + R ITV Y D Sbjct: 56 IIFN-----LGLVPMVMFNPILLSYKGPYETEEGCLSLTGVRT--TTRYETITVSYRDSK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 109 WQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|313895677|ref|ZP_07829233.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975803|gb|EFR41262.1| peptide deformylase [Selenomonas sp. oral taxon 137 str. F0430] Length = 137 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYRL 58 + +P+V D L + S K + +++ +++L+ + S +GLAA IG R+ Sbjct: 1 MVRPIVK--DAMFLGQPSEEAVKSD---LSIANDLLDTLKSHVGHCVGLAANMIGEKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + +N +I+ S + +EGCLS+P R ++ + V Y D Sbjct: 56 IAVCIGKSHLV-----MLNAEIVKSSTEQYETEEGCLSLPGQRKTMRHTWIE-VTYRDIK 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH NGIL Sbjct: 110 FRKQKNKFSGFTAQIIQHEIDHCNGILI 137 >gi|318060496|ref|ZP_07979219.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] Length = 426 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 18/162 (11%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLA 48 M + +++ P L + P+ + + +I ++D +L G+GL+ Sbjct: 262 MGELGVLLEGAPEL---AAPVREFDLPREREEAARTVREIETVLDRVLRAYPFPGGVGLS 318 Query: 49 AVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108 A QIGV ++ A +NP++I S + + E C R Sbjct: 319 APQIGVPRAAALVQPPWGAPAVT---LLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPN 375 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ITVR LA + HE+DHL G+L HL Sbjct: 376 EITVRTTTLTGHPLTTTYTQPLARLVHHEIDHLKGLLHPPHL 417 >gi|317488618|ref|ZP_07947161.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831659|ref|ZP_08164876.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912270|gb|EFV33836.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486530|gb|EGC88979.1| peptide deformylase [Eggerthella sp. HGA1] Length = 139 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 10/146 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60 + K LV + IL +V P ++ + D+++E LAA QIG ++ Sbjct: 1 MIKELVKD-EAILSQVCTPATTDDA---QVADDLVETLTSMDGAACLAANQIGATTCIIA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119 D P V NP+++ F + L R +D Sbjct: 57 YLDDDDQ----PHVMYNPRLLQALGAFKAVEGCLSLEADSKVTRFDRIKVGYSELVDGEL 112 Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145 + + +G A +QH +DH G L Sbjct: 113 KPRKKDFNGWTAQIIQHGIDHCKGKL 138 >gi|149411900|ref|XP_001510213.1| PREDICTED: similar to bromodomain adjacent to zinc finger domain, 1A [Ornithorhynchus anatinus] Length = 200 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 96 SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 I A R + ++D N + + A G A +QHE+DHL G L+ID + Sbjct: 131 GIKYGDAGRARRTDVPGHWLDENGEPVVWQASGWPARIIQHEMDHLQGSLYIDKMDS 187 >gi|42519881|ref|NP_965811.1| peptide deformylase [Lactobacillus johnsonii NCC 533] gi|41584171|gb|AAS09777.1| polypeptide deformylase [Lactobacillus johnsonii NCC 533] Length = 137 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ D + L+ S P K + + + L + GLAA IGV R++ Sbjct: 1 MAVKPIIH--DELSLKFKSLPATKQDLGAATDLKDTL-LSNKDRAAGLAANMIGVQKRII 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP I+ D + Y+ + +R ITV+Y + N Sbjct: 58 ALFVGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKTITVKYQNENL 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NGIL Sbjct: 111 ETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|71654685|ref|XP_815957.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70881052|gb|EAN94106.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 9 FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +P L R + ++K + + ++ ++ I +A + +V+I Sbjct: 45 YPHRSLTRPALRLDKTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKGHP 104 Query: 66 HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 V + T E C+S A V R +T D + Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQCVTCSGWDEYGNEK 164 Query: 123 IIYADGLLATCLQHELDHLNGILFI 147 DG+ A CL HELDHL+G + Sbjct: 165 TELLDGMRARCLMHELDHLHGKTIL 189 >gi|293375957|ref|ZP_06622217.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325841958|ref|ZP_08167535.1| peptide deformylase [Turicibacter sp. HGF1] gi|292645394|gb|EFF63444.1| peptide deformylase [Turicibacter sanguinis PC909] gi|325489791|gb|EGC92146.1| peptide deformylase [Turicibacter sp. HGF1] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRLV 59 + +P++ + L + S P K + + ++++++ + + +G+AA IG+ R++ Sbjct: 1 MIRPIMKD-EKFLAQKSVPATKADLAV---VEDLIDTLRANLERCVGMAANMIGIKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V + + + INP I+ + + + R I V Y+D Sbjct: 57 VFAIGE-----IIVPMINPVIVKKEKSYVTEESCLSLVGFRE--TTRYETIEVEYLDKQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q G +A +QHE+DH NGI+ Sbjct: 110 NKQKGTFTGFVAQIIQHEIDHCNGIII 136 >gi|329668141|gb|AEB94089.1| polypeptide deformylase [Lactobacillus johnsonii DPC 6026] Length = 137 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M KP++ D + L+ S P K + + + L + GLAA IGV R++ Sbjct: 1 MAVKPIIH--DELSLKFKSLPATKQDLGAATDLKDTL-LANKDKAAGLAANMIGVQKRII 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + + P+V +NP I+ D + Y+ + +R ITV+Y + N Sbjct: 58 ALFVGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKNITVKYQNENL 110 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NGIL Sbjct: 111 ETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|297205664|ref|ZP_06923060.1| peptide deformylase [Lactobacillus jensenii JV-V16] gi|297150242|gb|EFH30539.1| peptide deformylase [Lactobacillus jensenii JV-V16] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K ++ D L+R S P K + I + + L+ +G+AA IG R+++ Sbjct: 1 MIKEIIK--DEMFLKRKSLPATKADLSIGRDLRDTLQANKER-CVGMAANMIGYSKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ NP I+ + + V + R + V + D + Sbjct: 58 VNIGFFDVV-----MFNPVILERKNPYQVSEGCLSLSGSRN--TLRFKEVKVAFFDEKWE 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 +Q + G A QHE+DHL GIL Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGILI 136 >gi|116630410|ref|YP_819563.1| peptide deformylase [Lactobacillus gasseri ATCC 33323] gi|238852749|ref|ZP_04643155.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282850746|ref|ZP_06260121.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311111595|ref|ZP_07712992.1| peptide deformylase [Lactobacillus gasseri MV-22] gi|116095992|gb|ABJ61144.1| N-formylmethionyl-tRNA deformylase [Lactobacillus gasseri ATCC 33323] gi|238834599|gb|EEQ26830.1| peptide deformylase [Lactobacillus gasseri 202-4] gi|282558154|gb|EFB63741.1| peptide deformylase [Lactobacillus gasseri 224-1] gi|311066749|gb|EFQ47089.1| peptide deformylase [Lactobacillus gasseri MV-22] Length = 137 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57 M KP++ D + L+ S + K + + +++ + + + +G GLAA IGV R Sbjct: 1 MSVKPIIH--DELSLKFKSTLVTKQD---LAAAEDLKDTLIANNGKAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ +D + Y+ + +R ITV+Y + Sbjct: 56 IIALFVGP-----LPIVMLNPIIVKKADKYLAYEGCLS--LEGERPTERYKKITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + +A +QHE+DH NGIL Sbjct: 109 NFETRQQAFSDFVAEVIQHEVDHCNGILI 137 >gi|169350971|ref|ZP_02867909.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] gi|169292033|gb|EDS74166.1| hypothetical protein CLOSPI_01748 [Clostridium spiroforme DSM 1552] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 15/147 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + K +V D L + S + + + +++++L+ + +G+AA IG ++ Sbjct: 1 MIKKIVK--DKLFLSQKS---SLASKEDLYIVEDLLDTIKANKDKCVGMAANMIGYNKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +VI+ D INP I + + + A R ITV Y+D N Sbjct: 56 IVIENNDEYLV-----MINPSITKTTGKYETNEGCLCHETLMPAL--RYHKITVEYLDLN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145 + + A +QHE+DH NGIL Sbjct: 109 FKKKTRTFKDYSAQIIQHEIDHCNGIL 135 >gi|331083476|ref|ZP_08332588.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404169|gb|EGG83717.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + KP++ I L + S P K + + + + L +G+AA IGV ++ Sbjct: 1 MVKPIMK---DIFFLGQKSEPATKADLQVGKDLMDTLAANR-EGCVGMAANMIGVKKSVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V NP ++ + + + R I V Y+D N Sbjct: 57 IVNM-----GFVDVVMFNPVLVRKESPYETEEGCLSLTGVRK--TTRYQMIEVEYLDMNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q + DG A QHELDHL GIL Sbjct: 110 KKQKLKLDGWTAQICQHELDHLEGILI 136 >gi|259503598|ref|ZP_05746500.1| peptide deformylase [Lactobacillus antri DSM 16041] gi|259168422|gb|EEW52917.1| peptide deformylase [Lactobacillus antri DSM 16041] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +VS+ + + I + + L +G+AA IGV R+++ L P+ Sbjct: 12 LSQVSQLASRADLPIAQDLKDTLAAN-GDHCVGMAANMIGVPKRVIIASLGP-----FPV 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP II S + + R ITVR+ + Q + D A Sbjct: 66 VMFNPVIIAKSGPYQTQEGCLSLAGQRS--TTRFQKITVRFTNEQWTQQELSLDAFPAEI 123 Query: 134 LQHELDHLNGILF 146 +QHE+DH NGIL Sbjct: 124 VQHEIDHCNGILI 136 >gi|317488626|ref|ZP_07947169.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325831636|ref|ZP_08164853.1| peptide deformylase [Eggerthella sp. HGA1] gi|316912278|gb|EFV33844.1| polypeptide deformylase [Eggerthella sp. 1_3_56FAA] gi|325486507|gb|EGC88956.1| peptide deformylase [Eggerthella sp. HGA1] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + +P++ + +L++ S + + I ++L+ + +G+AA IG + R+ Sbjct: 1 MIRPIMR--NELVLQQPSTAATEADLPIAQ---DLLDTLAAHRHSCVGMAANMIGEVKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + D + +NP+I++ + + + A R I V Y D Sbjct: 56 IAFDNEGAYLA-----MLNPEIVSRAGAYETEEGCLSLAGTRPA--TRYRTIKVSYQDLA 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + ++ G A +QHE+DH NG+L Sbjct: 109 MKPRVKTFTGFTAQIIQHEIDHCNGVLI 136 >gi|323341211|ref|ZP_08081458.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] gi|323091405|gb|EFZ34030.1| peptide deformylase [Lactobacillus ruminis ATCC 25644] Length = 136 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 15/148 (10%) Query: 2 VKKPLVI-FPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + KP+ IL + S + + ++++ + + +AA IG+ R+ Sbjct: 1 MIKPINKDVG--ILSKKS---TTASKKDLQTASDLIDTLKAHQNSCVGMAANMIGINKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + P++ INP+I ++ + A KR I V Y+D N Sbjct: 56 IACFFGP-----FPVLMINPEITRKFGPYTAEEGCLSLEGKRVA--KRFKHIEVTYLDEN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q D A +QHE+DH NGIL Sbjct: 109 FAKQRQKLDDFNAQIVQHEIDHCNGILI 136 >gi|222151046|ref|YP_002560200.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] gi|222120169|dbj|BAH17504.1| polypeptide deformylase [Macrococcus caseolyticus JCSC5402] Length = 136 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + K L+ + +L R + + + ++ + LI ++ + ++ +G+G+AA QIGV ++ ++ Sbjct: 1 MIKQLIEEQNSLLHREVKDVTQFDASLKALIKDLEDTLFHHNGVGIAAPQIGVDLKVALV 60 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +NPKI+++S++ EGCLSIP V RS I + D + Sbjct: 61 ----DMEADGILQLVNPKIVSYSEETESDVEGCLSIPGVFGLVDRSIEIVIEANDLDGNK 116 Query: 122 QIIYADGLLAT 132 + A +A Sbjct: 117 IEMTAYDDIAR 127 >gi|309776085|ref|ZP_07671076.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] gi|308916036|gb|EFP61785.1| peptide deformylase [Erysipelotrichaceae bacterium 3_1_53] Length = 137 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 16/149 (10%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNL--IDNMLEV--MYSTDGIGLAAVQIGVLYR 57 + + +V DP L ++ + +L + ++L+ ++ +G+AA IGVL R Sbjct: 1 MIRDIVK--DPFLLS----CRSEDATLRDLQTMQDLLDTLQAHADHCVGMAANMIGVLKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + + +NP II + +EGCL + V R I V ++D Sbjct: 55 IIIFQDGGNYV-----IMLNPVIIKTGNKRYTTEEGCLCHDTKK-KVTRYEKIKVFFIDA 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + +I +G A +QHELDH +GIL Sbjct: 109 NGRKKIKTYEGFCAQIIQHELDHCDGILI 137 >gi|259048010|ref|ZP_05738411.1| peptide deformylase [Granulicatella adiacens ATCC 49175] gi|259035349|gb|EEW36604.1| peptide deformylase [Granulicatella adiacens ATCC 49175] Length = 137 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 ++K ++ DP L + S + ++ ++ + + +G+AA IGV + Sbjct: 1 MQKNIMK--DPLFLSQKSSVADP--KADAQVVRDLQDTLRANRDRCVGMAANMIGVKKNI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ + +NP+I + + + R I V Y D + Sbjct: 57 IIVAIGPMDLV-----MLNPRITKKQGPYETEEGCLSHTGTKK--TTRYQTIEVAYTDPS 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + A +QHE+DHL GIL Sbjct: 110 GKKHTGTFTDFTAQVIQHEIDHLEGILI 137 >gi|212716409|ref|ZP_03324537.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] gi|212660662|gb|EEB21237.1| hypothetical protein BIFCAT_01332 [Bifidobacterium catenulatum DSM 16992] Length = 141 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ ++ P L + S + + + ++ + + +G+AA IGV R+ Sbjct: 1 MQREIMTS-IPFLSQPSAE-ALNTPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP I + + + R R I V Y D Sbjct: 58 -IAFVDEDFGGRIFVMFNPTITAKDGAYDTSEGCLSLKGERR--TVRFQRIEVSYADRKF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH GI+ Sbjct: 115 RERHATFTGFTAQIIQHEIDHCEGIII 141 >gi|322388290|ref|ZP_08061894.1| peptide deformylase [Streptococcus infantis ATCC 700779] gi|321140962|gb|EFX36463.1| peptide deformylase [Streptococcus infantis ATCC 700779] Length = 136 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LPLAKDLQDTLLANRESCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ ++ PMV NP + +F + + R ITV Y D Sbjct: 55 VIIFNI-----GMIPMVMFNPVLQSFEGSYETEEGCLSLTGVRP--TTRYEKITVSYRDI 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + Q Q I G A QHELDHL GI+ Sbjct: 108 HWQEQTITLTGFPAQICQHELDHLEGIII 136 >gi|319938534|ref|ZP_08012927.1| peptide deformylase [Coprobacillus sp. 29_1] gi|319806298|gb|EFW02974.1| peptide deformylase [Coprobacillus sp. 29_1] Length = 137 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + +V D IL + S + M ++ ++ + + +G+AA IG R+ Sbjct: 1 MIRDIVT--DQFILSQKSVEATLDD---MAIVQDLRDTLVAHEDHCVGMAANMIGYHKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ + + + T + ++ I + VKR I V Y D + Sbjct: 56 IIVKNNNDHLV----MINPIILKTSGRYYDTHEGCLSHIGEKA--VKRYEKIKVEYKDIH 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +I +G +A +QHE+DH GIL Sbjct: 110 FKVKIKTFEGYVAQIIQHEIDHCQGILI 137 >gi|291531177|emb|CBK96762.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum 70/3] Length = 136 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + + +++LE S +G+AA IGVL ++ I+ Sbjct: 12 LSQKSAPATEND---RQTGEDLLETLIANSERCVGMAANMIGVLKNIIAINDNGDYLL-- 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 NP+II + + D KR I VRY+D N + +I +G A Sbjct: 67 ---MYNPEIIKSDGAYETEEGCLS--LDGVRKTKRYKKIKVRYLDRNFKIKIKTYEGFTA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE+DHL+GI+ Sbjct: 122 QIIQHEVDHLSGIII 136 >gi|226322583|ref|ZP_03798101.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] gi|225209077|gb|EEG91431.1| hypothetical protein COPCOM_00355 [Coprococcus comes ATCC 27758] Length = 136 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 17/149 (11%) Query: 2 VKKPLVI--FPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 + KP++ F LR+ + K + + ++L+ + +G+AA IGV Sbjct: 1 MVKPIMRDLF---FLRQKAEKATKGDFPV---AIDLLDTLKAHEDGCVGMAANMIGVNKA 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ +++ + NPKI+ + + + D R I V Y D Sbjct: 55 IIAVNM-----GFMNVAMFNPKIVKRNGKYETEEGCLS--LDGVRKCVRYQEIKVEYEDI 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE DHLNGI+ Sbjct: 108 NFKRQRQKYSGWTAQIIQHECDHLNGIII 136 >gi|238855159|ref|ZP_04645481.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|260665536|ref|ZP_05866382.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|282932572|ref|ZP_06337994.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|313473142|ref|ZP_07813626.1| peptide deformylase [Lactobacillus jensenii 1153] gi|238832240|gb|EEQ24555.1| peptide deformylase [Lactobacillus jensenii 269-3] gi|239528614|gb|EEQ67615.1| peptide deformylase [Lactobacillus jensenii 1153] gi|260560657|gb|EEX26635.1| polypeptide deformylase [Lactobacillus jensenii SJ-7A-US] gi|281303320|gb|EFA95500.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L+R S P K + I + + L+ +G+AA IG R+++ Sbjct: 1 MIKEIVK--DEMFLKRKSLPATKADLPIGQDLRDTLQANKER-CVGMAANMIGYSKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V N I+ D + V + R + V ++D + Sbjct: 58 VNI-----GFLNVVMFNSVILERKDPYQVSEGCLSLSGSRN--TLRFKEVKVAFLDEKWE 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 +Q + G A QHE+DHL GIL Sbjct: 111 NQELTLTGFAAEICQHEMDHLEGILI 136 >gi|256852171|ref|ZP_05557557.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260661796|ref|ZP_05862707.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|282933528|ref|ZP_06338899.1| peptide deformylase [Lactobacillus jensenii 208-1] gi|256615217|gb|EEU20408.1| polypeptide deformylase [Lactobacillus jensenii 27-2-CHN] gi|260547543|gb|EEX23522.1| polypeptide deformylase [Lactobacillus jensenii 115-3-CHN] gi|281302342|gb|EFA94573.1| peptide deformylase [Lactobacillus jensenii 208-1] Length = 136 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K ++ D L+R S P K + I + + L+ +G+AA IG R+++ Sbjct: 1 MIKEIIK--DEMFLKRKSLPATKADLSIGRDLRDTLQANKER-CVGMAANMIGYSKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ NP I+ + + V + R + V + D + Sbjct: 58 VNIGFFDVV-----MFNPVILERKNPYQVSEGCLSLSGSRN--TLRFKEVKVAFFDEKWE 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + G A QHE+DHL GIL Sbjct: 111 KQELTLTGFAAEICQHEMDHLEGILI 136 >gi|104773326|ref|YP_618306.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422407|emb|CAI96944.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 143 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NP I+ S + + R IT Sbjct: 56 IGVNKAIIAVN-----AGFLPIVMLNPTIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|302766599|ref|XP_002966720.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] gi|300166140|gb|EFJ32747.1| hypothetical protein SELMODRAFT_407843 [Selaginella moellendorffii] Length = 277 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 36/139 (25%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 +V++ DP LR + I + + L ML+V Y DG+GL+A Q+GV RL+V + Sbjct: 142 LSIVLYADPKLRARNIRISSFDDKVKKL---MLDVTYRRDGVGLSAPQVGVNARLMVFNP 198 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 + + ++ D N + Sbjct: 199 EGERGKGKED---------------------------------RYRSELKAQDINGKKFG 225 Query: 124 IYADGLLATCLQHELDHLN 142 G A +HE DHL Sbjct: 226 TAFRGWTAGIFRHEYDHLE 244 >gi|260589802|ref|ZP_05855715.1| peptide deformylase [Blautia hansenii DSM 20583] gi|331083229|ref|ZP_08332345.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|260539843|gb|EEX20412.1| peptide deformylase [Blautia hansenii DSM 20583] gi|330404618|gb|EGG84158.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + K +V I L + S P K + I +++ L +G+AA IGV ++ Sbjct: 1 MVKSIVK---DIFFLAQKSEPATKEDLHIGQDLEDTLAANRER-CVGMAANMIGVKKNII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +I++ ++ NP I+ + + A R I V Y D N Sbjct: 57 IINM-----GFVDVLMFNPVIVKKDTPYETEEGCLSLEGVRPAV--RFQNIEVEYYDKNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A QHE+DHL+GI+ Sbjct: 110 KKQRQKLTGWTAQICQHEIDHLDGIII 136 >gi|213691471|ref|YP_002322057.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522932|gb|ACJ51679.1| formylmethionine deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457544|dbj|BAJ68165.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 139 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++P++ LR S + + +I+++++ + +G+AA IGV R+ Sbjct: 1 MQRPIMTS-RSFLRTPSE-VAGPGDE--QVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP I F + + R R I V Y D Sbjct: 56 -IVFVDEDLGGRITVMFNPVITASDGAFDAQEGCLSLTGERR--TLRYRRIEVNYEDRRF 112 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NGI+ Sbjct: 113 RARHATFAGWTAQIIQHEVDHCNGIII 139 >gi|116334552|ref|YP_796079.1| peptide deformylase [Lactobacillus brevis ATCC 367] gi|116099899|gb|ABJ65048.1| N-formylmethionyl-tRNA deformylase [Lactobacillus brevis ATCC 367] Length = 136 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLV 59 + K +V + L + S+P + I ++++ + + +G+AA IGV R++ Sbjct: 1 MIKSVVHD-EARLVQRSQPATPADG---QTITDLIDTLRANQENCVGMAANMIGVNRRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 V+D+ P+ INP+I + + + + R I V +++ N Sbjct: 57 VVDM-----GILPVAMINPEITKMAGPYDTQEGCLSLSGERPTH--RFKTIDVTFLNQNF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 Q Q G +A +QHE++H NGIL Sbjct: 110 QKQRQTFTGFVAQIIQHEVEHCNGILI 136 >gi|217073027|gb|ACJ84873.1| unknown [Medicago truncatula] Length = 241 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 7 VIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 V DP+L ++ ++ ++ + +ID+M+ VM G+GLAA QIGV R++V++ Sbjct: 82 VKAGDPVLHEPAQEVDPSEIMSDKVQKIIDDMIRVMRKAPGVGLAAPQIGVSSRIIVLED 141 Query: 64 QDHAHRKNP 72 + P Sbjct: 142 TEEFISYAP 150 >gi|309798745|ref|ZP_07693009.1| polypeptide deformylase [Streptococcus infantis SK1302] gi|308117562|gb|EFO54974.1| polypeptide deformylase [Streptococcus infantis SK1302] Length = 136 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++K +V D I L +VS+P + + + + + LE +GLAA IGV R+++ Sbjct: 1 MEKKIVR--DMIFLSQVSQPASQEDLPLAKDLQDTLEANR-ETCVGLAANMIGVQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ PMV NP + +F + + R ITV Y D + + Sbjct: 58 FNI-----GMIPMVMFNPVLKSFEGPYETEEGCLSLTGVRP--TTRYEKITVSYRDIHWK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 111 EQTITLTGFPAQICQHELDHLEGRII 136 >gi|225350925|ref|ZP_03741948.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158381|gb|EEG71623.1| hypothetical protein BIFPSEUDO_02500 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 141 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ ++ P L + S + + + ++ + + +G+AA IGV R+ Sbjct: 1 MQREIMTS-IPFLSQPSAE-ALNTPEDLAVAQDLKDTLDAHRNGCVGMAANMIGVSKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP I + + + R R I V Y D Sbjct: 58 -IAFVDEDFGDRIFVMFNPTITAKDGAYDASEGCLSLKGERR--TVRFQRIEVSYADRKF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH GI+ Sbjct: 115 RERHATFTGFTAQIIQHEIDHCEGIII 141 >gi|296875884|ref|ZP_06899945.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] gi|296433125|gb|EFH18911.1| peptide deformylase [Streptococcus parasanguinis ATCC 15912] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 +KK +V +L + S + L ++ + + + + +GLAA IGV R Sbjct: 1 MKKNIVK---DVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++I + NP ++ + + + R I+V Y D Sbjct: 55 AIIIRMGSENLV-----LFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEISVAYRDV 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + I+ G A QHE+DHL GI+ Sbjct: 108 NWKAKKIHLSGFPAQICQHEMDHLEGIII 136 >gi|325289165|ref|YP_004265346.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] gi|324964566|gb|ADY55345.1| formylmethionine deformylase [Syntrophobotulus glycolicus DSM 8271] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + + ++ D LR S P + + + ++L+ + + G LAA IGV R+ Sbjct: 1 MVQAIIK--DEAFLRIPSAPAAAEDLSV---VQDLLDTLSANAGCCVGLAANMIGVAKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + +NP+I+ S+ + + +A +R I V+Y D Sbjct: 56 IAVTAEGGYLV-----MLNPEIVKQSEPYETEEACLSLAGTRKA--RRCKNIRVQYQDTA 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q ++ G A +QHE+DH NGIL Sbjct: 109 LQTRLQNFKGFTAQIIQHEIDHCNGILI 136 >gi|317482099|ref|ZP_07941123.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] gi|316916458|gb|EFV37856.1| polypeptide deformylase [Bifidobacterium sp. 12_1_47BFAA] Length = 139 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 10/147 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++P++ LR S E +I+++++ + +G+AA IGV R+ Sbjct: 1 MQRPIMTS-RSFLRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V +NP I F + + R R I V Y D Sbjct: 56 -IVFVDEDLGGRITVMLNPVITASDGAFDTQEGCLSLTGERR--TLRYRRIEVNYEDRRF 112 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH NGI+ Sbjct: 113 RARHATFTGWTAQIIQHEVDHCNGIII 139 >gi|195978210|ref|YP_002123454.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974915|gb|ACG62441.1| peptide deformylase Def [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + V + + E + KR I V Y+D + Sbjct: 58 VSMGFVDLVMFNPVLT-------AKRGAFEAEESCLSLTGQRRTKRYQEIKVDYLDTHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136 >gi|307708362|ref|ZP_07644829.1| peptide deformylase [Streptococcus mitis NCTC 12261] gi|307615808|gb|EFN95014.1| peptide deformylase [Streptococcus mitis NCTC 12261] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++ + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSSEGVYETEEGCLSLTGVRP--TKRYEIIRVAYCDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|154486846|ref|ZP_02028253.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] gi|154084709|gb|EDN83754.1| hypothetical protein BIFADO_00678 [Bifidobacterium adolescentis L2-32] Length = 141 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++ ++ P L + S E + + + ++ + + +G+AA IGV R+ Sbjct: 1 MQREIMTS-IPFLSQPSAAAEN-TEEDLAVAQDLKDTLDAHRNGCVGMAANMIGVPKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V NP I F + R I V YMD Sbjct: 58 -IAFVDEDFGGRIFVMFNPHITAEDGAFDTAEGCLS--LQGERRTVRYQRIEVDYMDRKF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH +G++ Sbjct: 115 RERHAAFTGFTAQIIQHEIDHCDGVII 141 >gi|148988601|ref|ZP_01820034.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|148990374|ref|ZP_01821546.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|149021827|ref|ZP_01835834.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|168493454|ref|ZP_02717597.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] gi|147924329|gb|EDK75421.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147925802|gb|EDK76877.1| peptide deformylase [Streptococcus pneumoniae SP6-BS73] gi|147930063|gb|EDK81050.1| peptide deformylase [Streptococcus pneumoniae SP23-BS72] gi|183576408|gb|EDT96936.1| polypeptide deformylase [Streptococcus pneumoniae CDC3059-06] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETTRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|329116594|ref|ZP_08245311.1| peptide deformylase [Streptococcus parauberis NCFD 2020] gi|326906999|gb|EGE53913.1| peptide deformylase [Streptococcus parauberis NCFD 2020] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V DP L ++ K + I + + L + IGLAA IG +++ Sbjct: 1 MLRTIVK--DPLFLSEKAQVATKEDLWIGKDLQDTL-TYHRDRCIGLAANMIGEKKAVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP+II SD + + KR ITVRY+D N + Sbjct: 58 ISM-----GFVDLVMFNPQIIKQSDVYQTEESCLSLTGSKP--TKRFETITVRYLDMNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHE+DHL G L Sbjct: 111 EKNLTLTGLPAQICQHEMDHLEGKLI 136 >gi|116513303|ref|YP_812209.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092618|gb|ABJ57771.1| N-formylmethionyl-tRNA deformylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 143 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAVSD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + + R IT Sbjct: 56 IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|315613522|ref|ZP_07888429.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] gi|315314213|gb|EFU62258.1| peptide deformylase [Streptococcus sanguinis ATCC 49296] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 ++K +V D L +VS+P + + + L ++ + +GLAA IGV R+ Sbjct: 1 MEKKIVR--DVLFLSQVSKPASQED---IYLARDLQDTLLANRETCVGLAANMIGVQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + PMV NP +++ + + R ITV Y D Sbjct: 56 IIFN-----LGLVPMVMFNPILLSNKGPYETEEGCLSLTGVRP--TTRYETITVSYRDSK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q I G A QHELDHL G + Sbjct: 109 WQELTITLTGFPAQICQHELDHLEGRII 136 >gi|9957264|gb|AAG09295.1|AF177768_1 ORF260 [Trypanosoma brucei] gi|261335512|emb|CBH18506.1| polypeptide deformylase, putative [Trypanosoma brucei gambiense DAL972] Length = 260 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 6/146 (4%) Query: 9 FPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +P L R + +E + + N+ ++ I +A + +V+I Sbjct: 45 YPHRSLTRPALRLERHQVNTPLFHSQLLNLNKMATDLQCISFSAPKGHWDAAIVLIKGHP 104 Query: 66 HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + E C+S A V R IT +D + Sbjct: 105 NEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSITCSGLDEYGNEK 164 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 DG+ A CL HELDHL+G +D Sbjct: 165 TEVLDGMRARCLMHELDHLSGKTILD 190 >gi|325124924|gb|ADY84254.1| Polypeptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 143 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + + R IT Sbjct: 56 IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLEEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|149007536|ref|ZP_01831171.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|149007898|ref|ZP_01831485.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760625|gb|EDK67599.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|147760895|gb|EDK67865.1| polypeptide deformylase [Streptococcus pneumoniae SP18-BS74] gi|332074306|gb|EGI84783.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17545] Length = 136 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETTRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|296454738|ref|YP_003661881.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] gi|296184169|gb|ADH01051.1| formylmethionine deformylase [Bifidobacterium longum subsp. longum JDM301] Length = 134 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 14 LRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 LR S + I +L+D + + +G+AA IGV R+ I D Sbjct: 7 LRTPSEAAGPGDEATIQDLVDTLEA--NRSRCVGMAANMIGVSKRI--IVFVDEDLGGRI 62 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V +NP I F + + R R I V Y D + + G A Sbjct: 63 TVMLNPVITASDGAFDTQEGCLSLTGERR--TLRCRRIEVNYEDRRFRARHATFTGWTAQ 120 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 121 IIQHEVDHCNGIII 134 >gi|23466247|ref|NP_696850.1| peptide deformylase [Bifidobacterium longum NCC2705] gi|189440729|ref|YP_001955810.1| peptide deformylase [Bifidobacterium longum DJO10A] gi|322689813|ref|YP_004209547.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] gi|322691751|ref|YP_004221321.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|23326994|gb|AAN25486.1| polypeptide deformylase [Bifidobacterium longum NCC2705] gi|189429164|gb|ACD99312.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] gi|320456607|dbj|BAJ67229.1| peptide deformylase [Bifidobacterium longum subsp. longum JCM 1217] gi|320461149|dbj|BAJ71769.1| peptide deformylase [Bifidobacterium longum subsp. infantis 157F] Length = 139 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 10/147 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++P++ LR S E +I+++++ + +G+AA IGV R+ Sbjct: 1 MQRPIMTS-RSFLRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI- 55 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D V +NP I F + + R R + A Sbjct: 56 -IVFVDEDLGGRITVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRA 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 +H G A +QHE+DH NGI+ Sbjct: 115 RHATFA--GWTAQIIQHEVDHCNGIII 139 >gi|300362713|ref|ZP_07058888.1| peptide deformylase [Lactobacillus gasseri JV-V03] gi|300353141|gb|EFJ69014.1| peptide deformylase [Lactobacillus gasseri JV-V03] Length = 137 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57 M KP++ D + L+ S + ++ + + + +G GLAA IGV R Sbjct: 1 MSVKPIIH--DELSLKFKS---TLATKQDLTTAKDLKDTLLANNGKAAGLAANMIGVQKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + + P+V +NP I+ +D + Y+ + +R ITV+Y + Sbjct: 56 IIALFVGP-----LPIVMLNPIIVKKTDKYLAYEGCLS--LEGERPTERYKKITVKYQNE 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + +A +QHE+DH NGIL Sbjct: 109 NFETRQQDFSDFVAEVIQHEVDHCNGILI 137 >gi|167751759|ref|ZP_02423886.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|167655567|gb|EDR99696.1| hypothetical protein EUBSIR_02768 [Eubacterium siraeum DSM 15702] gi|291557962|emb|CBL35079.1| N-formylmethionyl-tRNA deformylase [Eubacterium siraeum V10Sc8a] Length = 136 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L + S P + + +++LE S +G+AA IG+L ++ I+ Sbjct: 12 LSQKSAPATEND---RQTGEDLLETLIANSEHCVGMAANMIGILKNIIAINDNGDYLL-- 66 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 NP+II + + D KR I VRY+D N + +I +G A Sbjct: 67 ---MYNPEIIKSDGAYETEEGCLS--LDGLRKTKRYKKIKVRYLDRNFKIKIKTYEGFTA 121 Query: 132 TCLQHELDHLNGILF 146 +QHE DHL+GI+ Sbjct: 122 QIIQHETDHLSGIII 136 >gi|313890594|ref|ZP_07824222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] gi|313121111|gb|EFR44222.1| peptide deformylase [Streptococcus pseudoporcinus SPIN 20026] Length = 136 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V DP L+++S+ K + I + + L + +GLAA IG R+++ Sbjct: 1 MIRQIVK--DPFFLQQISKQATKEDLPIGKDLQDTL-SFHREHCLGLAANMIGESKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + ++ NPK++ ++ + + + + +R ITV Y+D N + Sbjct: 58 ISM-----GFVDILMFNPKLVKKTNPYVTEESCLSLSGNQK--TQRYQKITVEYLDLNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + +GL A QHELDHL+GIL Sbjct: 111 KKSLSLNGLAAQICQHELDHLDGILI 136 >gi|229826625|ref|ZP_04452694.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] gi|229789495|gb|EEP25609.1| hypothetical protein GCWU000182_02001 [Abiotrophia defectiva ATCC 49176] Length = 138 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + LV D LR S P+ K + M +++++ + Y+ + +G++A IG+ + Sbjct: 1 MVRELVK--DQFFLRLKSEPVTKDD---MAVVEDLKDTLKAYADECVGMSANMIGINKAV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + I ++ +NPKII S + + + +A R IT+ Y D + Sbjct: 56 IAIQPENSDVMTV---MLNPKIIKKSGAYETEEGCMCLEGERKAV--RHRNITLEYFDED 110 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + I G +A ++HE DHL GI+ Sbjct: 111 FKKHIKLYSGYIAEIIEHECDHLEGIII 138 >gi|257790523|ref|YP_003181129.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] gi|257474420|gb|ACV54740.1| formylmethionine deformylase [Eggerthella lenta DSM 2243] Length = 139 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 10/146 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60 + K LV + L +V P ++ + D+++E LAA QIG ++ Sbjct: 1 MIKELVKD-EATLSQVCTPAT---AEDAQVADDLVETLTSMDGAACLAANQIGATTCIIA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-CLSIPDYRADVKRSAFITVRYMDCNA 119 D P V NP+++ F + L R +D Sbjct: 57 YLDDDDQ----PHVMYNPRLLQALGAFKAVEGCLSLEADSKVTRFDRIKVGYSELVDGEL 112 Query: 120 QHQIIYADGLLATCLQHELDHLNGIL 145 + + +G A +QH +DH G L Sbjct: 113 KPRKKDFNGWTAQIIQHGIDHCKGKL 138 >gi|322411580|gb|EFY02488.1| peptide deformylase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 136 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V D L++ S+ K + I + + L + +GLAA IG R+++ Sbjct: 1 MIREIVT--DTFFLQQKSKAATKEDLWIGQALQDTL-SFHRDHCLGLAANMIGEQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP I++ + + + + KR ITV Y+D N + Sbjct: 58 ISM-----GFVDLVMFNPVIVSKREAYETEESCLSLTGSRQ--TKRYTSITVEYVDLNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 111 PKRLRLSGLPAQICQHELDHLEGILI 136 >gi|323465635|gb|ADX69322.1| Polypeptide deformylase [Lactobacillus helveticus H10] Length = 137 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M K ++ D + L + S N + +N ++ + + GLAA IG R Sbjct: 1 MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P + INPKI+ S + + + R ITV Y + Sbjct: 56 IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH +GIL Sbjct: 109 DFKEVTQDFSEFTAETIQHEVDHCDGILI 137 >gi|148992559|ref|ZP_01822227.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|149003222|ref|ZP_01828118.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|149011789|ref|ZP_01832985.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|168488787|ref|ZP_02712986.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|237650234|ref|ZP_04524486.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974] gi|237820884|ref|ZP_04596729.1| peptide deformylase [Streptococcus pneumoniae CCRI 1974M2] gi|147758682|gb|EDK65679.1| polypeptide deformylase [Streptococcus pneumoniae SP14-BS69] gi|147764220|gb|EDK71152.1| peptide deformylase [Streptococcus pneumoniae SP19-BS75] gi|147928576|gb|EDK79590.1| polypeptide deformylase [Streptococcus pneumoniae SP9-BS68] gi|183572696|gb|EDT93224.1| polypeptide deformylase [Streptococcus pneumoniae SP195] gi|332072344|gb|EGI82827.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA17570] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANHDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRVAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|168483572|ref|ZP_02708524.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] gi|172043063|gb|EDT51109.1| polypeptide deformylase [Streptococcus pneumoniae CDC1873-00] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRVAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|325685192|gb|EGD27314.1| formylmethionine deformylase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 143 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + + ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLSLSQPAAKAAASD---RQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ + + + + I + +EGCLS+P R R IT Sbjct: 56 IGVNKAIIAV------NAGFLPIVMLNPKIVKGSGHYLAEEGCLSLPGER-PADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|300811934|ref|ZP_07092395.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313122848|ref|YP_004033107.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300497131|gb|EFK32192.1| peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279411|gb|ADQ60130.1| Peptide deformylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYST--------DGIGLAAVQ 51 M + ++ DP+ L + + K ++ ++L+ + + GLAA Sbjct: 1 MTVQKIIH--DPLNLSQPAA---KAAANDRQAAQDLLDTLLAHRESIDGLPPAAGLAANM 55 Query: 52 IGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111 IGV ++ ++ P+V +NPKI+ S + + R IT Sbjct: 56 IGVNKAIIAVN-----AGFLPIVMLNPKIVKRSGHYLAEEGCLS--LPGERPADRYEEIT 108 Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 V+Y D + + G +A +QHE+DH G L Sbjct: 109 VKYQDMDLKEHEQAFTGFVAETIQHEVDHCKGKLI 143 >gi|225868458|ref|YP_002744406.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] gi|225701734|emb|CAW99099.1| peptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 136 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + V + + E + R I V Y+D + Sbjct: 58 VSMGFVDLVMFNPVLT-------AKREAFEAEESCLSLTGQRRTTRYQEIKVDYLDTHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136 >gi|15901392|ref|NP_345996.1| peptide deformylase [Streptococcus pneumoniae TIGR4] gi|15903451|ref|NP_359001.1| peptide deformylase [Streptococcus pneumoniae R6] gi|111658457|ref|ZP_01409130.1| hypothetical protein SpneT_02000357 [Streptococcus pneumoniae TIGR4] gi|116515494|ref|YP_816841.1| peptide deformylase [Streptococcus pneumoniae D39] gi|148984899|ref|ZP_01818152.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|148997383|ref|ZP_01824988.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|168491557|ref|ZP_02715700.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|168575253|ref|ZP_02721216.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|169834412|ref|YP_001694956.1| peptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|194396850|ref|YP_002038183.1| peptide deformylase [Streptococcus pneumoniae G54] gi|221232262|ref|YP_002511415.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225854993|ref|YP_002736505.1| peptide deformylase [Streptococcus pneumoniae JJA] gi|225857177|ref|YP_002738688.1| peptide deformylase [Streptococcus pneumoniae P1031] gi|225861384|ref|YP_002742893.1| peptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298230075|ref|ZP_06963756.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255200|ref|ZP_06978786.1| peptide deformylase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503289|ref|YP_003725229.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|307068194|ref|YP_003877160.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|14973038|gb|AAK75636.1| polypeptide deformylase [Streptococcus pneumoniae TIGR4] gi|15459060|gb|AAL00212.1| Formylmethionine deformylase [Streptococcus pneumoniae R6] gi|15858844|gb|AAK13237.1| peptide deformylase-like protein [Streptococcus pneumoniae] gi|116076070|gb|ABJ53790.1| polypeptide deformylase [Streptococcus pneumoniae D39] gi|147756438|gb|EDK63479.1| polypeptide deformylase [Streptococcus pneumoniae SP11-BS70] gi|147922921|gb|EDK74037.1| peptide deformylase [Streptococcus pneumoniae SP3-BS71] gi|168996914|gb|ACA37526.1| polypeptide deformylase [Streptococcus pneumoniae Hungary19A-6] gi|183574125|gb|EDT94653.1| polypeptide deformylase [Streptococcus pneumoniae CDC0288-04] gi|183578738|gb|EDT99266.1| polypeptide deformylase [Streptococcus pneumoniae MLV-016] gi|194356517|gb|ACF54965.1| peptide deformylase [Streptococcus pneumoniae G54] gi|220674723|emb|CAR69296.1| peptide deformylase [Streptococcus pneumoniae ATCC 700669] gi|225723305|gb|ACO19158.1| polypeptide deformylase [Streptococcus pneumoniae JJA] gi|225725217|gb|ACO21069.1| polypeptide deformylase [Streptococcus pneumoniae P1031] gi|225728377|gb|ACO24228.1| polypeptide deformylase [Streptococcus pneumoniae Taiwan19F-14] gi|298238884|gb|ADI70015.1| peptide deformylase [Streptococcus pneumoniae TCH8431/19A] gi|301800382|emb|CBW33013.1| peptide deformylase [Streptococcus pneumoniae OXC141] gi|306409731|gb|ADM85158.1| N-formylmethionyl-tRNA deformylase [Streptococcus pneumoniae AP200] gi|327389740|gb|EGE88085.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA04375] Length = 136 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|71413918|ref|XP_809080.1| polypeptide deformylase-like protein [Trypanosoma cruzi strain CL Brener] gi|70873406|gb|EAN87229.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 9 FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +P L R + +++ + + ++ ++ I +A + +V+I Sbjct: 45 YPHRSLTRPALRLDRTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKSHP 104 Query: 66 HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 V + T E C+S A V R +T D + Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSVTCSGWDEYGNEK 164 Query: 123 IIYADGLLATCLQHELDHLNGILFI 147 DG+ A CL HELDHL+G + Sbjct: 165 TELLDGMRARCLMHELDHLHGKTIL 189 >gi|115437554|ref|NP_001043323.1| Os01g0555800 [Oryza sativa Japonica Group] gi|113532854|dbj|BAF05237.1| Os01g0555800 [Oryza sativa Japonica Group] Length = 121 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 45/78 (57%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 INPK+ T S +++ EGCLS+ YRA V+R + V +D N + + A G A L Sbjct: 21 IINPKLKTTSKRTALFFEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARIL 80 Query: 135 QHELDHLNGILFIDHLSR 152 QHE DHL G L++D + Sbjct: 81 QHECDHLEGTLYVDTMVP 98 >gi|227546595|ref|ZP_03976644.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212912|gb|EEI80791.1| peptide deformylase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291516343|emb|CBK69959.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. longum F8] Length = 134 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 LR S E +I+++++ + +G+AA IGV R+ I D Sbjct: 7 LRTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGR 61 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 V +NP I F + + R R + A+H G A Sbjct: 62 ITVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRARHATFA--GWTA 119 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 120 QIIQHEVDHCNGIII 134 >gi|167767071|ref|ZP_02439124.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|167711046|gb|EDS21625.1| hypothetical protein CLOSS21_01589 [Clostridium sp. SS2/1] gi|291559591|emb|CBL38391.1| N-formylmethionyl-tRNA deformylase [butyrate-producing bacterium SSC/2] Length = 136 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K ++ DP L + S K + ++ ++L+ + + +G+AA IGV + Sbjct: 1 MIKDIMK--DPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKNI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + + IT +EGCLS+ R KR I V Y+D + Sbjct: 56 IVVAVGPFQFA------MINPKITKKSGVFETEEGCLSLDGVR-PCKRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 109 FKEQHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|323141001|ref|ZP_08075911.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] gi|322414538|gb|EFY05347.1| peptide deformylase [Phascolarctobacterium sp. YIT 12067] Length = 136 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 ++KP++ + L + S+P ++ + ++L+ ++ +GLAA IGV ++ Sbjct: 1 MEKPIIKD-EAFLAQKSQPATFMDIAVAQ---DLLDTLAAHADRCVGLAANMIGVQKCVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 +++ I + +EGCLS+ RA V R ITV Y D Sbjct: 57 AVNIGPTNIAML------NPEIIKRSGKYMTEEGCLSLEGERAAV-RYEKITVAYQDMQF 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G A +QHE+DH +GI+ Sbjct: 110 KKCKQSFSGFTAQIIQHEIDHCHGIII 136 >gi|251782236|ref|YP_002996538.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390865|dbj|BAH81324.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127088|gb|ADX24385.1| peptide deformylase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 136 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V D L++ S+ K + I + + L + +GLAA IG R+++ Sbjct: 1 MIREIVT--DTFFLQQKSKAATKEDLWIGQALQDTL-SFHRDHCLGLAANMIGEQKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP +++ + + + + KR ITV Y+D N + Sbjct: 58 ISM-----GFVDLVMFNPVMVSKKEAYETEESCLSLTGSRQ--TKRYTSITVEYVDLNWR 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 111 PKRLRLSGLPAQICQHELDHLEGILI 136 >gi|153855447|ref|ZP_01996578.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] gi|149752101|gb|EDM62032.1| hypothetical protein DORLON_02592 [Dorea longicatena DSM 13814] Length = 136 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 + +P++ I L + S P + + + ++L+ + +G+AA IGV Sbjct: 1 MIRPIMK---DIFFLNQRSEPATEAD---KQVAVDLLDTLKAHEEGCVGMAANMIGVKKC 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ +++ + NPKI+ S + + + R I V Y D Sbjct: 55 IIAVNM-----GFMNVAMFNPKIVKRSGKYETEEGCLSLTGVRK--CTRYQEIEVEYQDM 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE+DH +GI+ Sbjct: 108 NFKKQRQKYTGWTAQIIQHEVDHCHGIVI 136 >gi|161506686|ref|YP_001576636.1| peptide deformylase [Lactobacillus helveticus DPC 4571] gi|260101789|ref|ZP_05752026.1| peptide deformylase [Lactobacillus helveticus DSM 20075] gi|160347675|gb|ABX26349.1| Polypeptide deformylase [Lactobacillus helveticus DPC 4571] gi|260084400|gb|EEW68520.1| peptide deformylase [Lactobacillus helveticus DSM 20075] Length = 137 Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M K ++ D + L + S N + +N ++ + + GLAA IG R Sbjct: 1 MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAAGLAANMIGQSKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P + INPKI+ S + + + R ITV Y + Sbjct: 56 IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + +A +QHE+DH +GIL Sbjct: 109 DFKEVTQDFSEFIAETIQHEVDHCDGILI 137 >gi|307705978|ref|ZP_07642803.1| polypeptide deformylase family protein [Streptococcus mitis SK564] gi|307620488|gb|EFN99599.1| polypeptide deformylase family protein [Streptococcus mitis SK564] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGPYETEEGCLSLVGVRP--TKRYETIKVAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|322816071|gb|EFZ24514.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P L P++ + + +I+ + L A QIG ++ + Sbjct: 72 PIVQLPARSLWCKQYPLDPAQVRSGEFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131 Query: 62 DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102 P+ + + E C S Sbjct: 132 FDGSVFINPVNLDLLEVEAAGTRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++R A + +R + + + + + A HELDHL+G+LF + Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLSGVLFTRRIPD 241 >gi|313905668|ref|ZP_07839029.1| formylmethionine deformylase [Eubacterium cellulosolvens 6] gi|313469492|gb|EFR64833.1| formylmethionine deformylase [Eubacterium cellulosolvens 6] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + K +V DP LR+ S P K + +I ++++ + +G+AA IGV ++ Sbjct: 1 MVKQIVR--DPLFLRQKSEPATKED---KQVITDLMDTLRANQERCVGMAANMIGVRKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + +NP I S + + D R I V Y+D + Sbjct: 56 IVVAVGPFIVP-----MVNPVITRKSGKYETEEGCLS--LDGVRSCTRYKEIEVEYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + + A +QHE+ H +G L Sbjct: 109 FKKKHGKFNDFTAQIIQHEIQHFSGELI 136 >gi|253751244|ref|YP_003024385.1| peptide deformylase [Streptococcus suis SC84] gi|253753145|ref|YP_003026285.1| peptide deformylase [Streptococcus suis P1/7] gi|253754968|ref|YP_003028108.1| peptide deformylase [Streptococcus suis BM407] gi|251815533|emb|CAZ51115.1| peptide deformylase [Streptococcus suis SC84] gi|251817432|emb|CAZ55172.1| peptide deformylase [Streptococcus suis BM407] gi|251819390|emb|CAR44821.1| peptide deformylase [Streptococcus suis P1/7] gi|319757521|gb|ADV69463.1| peptide deformylase [Streptococcus suis JS14] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P++ I L++ S P +++ + + + L +G+AA IGV R++ Sbjct: 1 MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ NP +I+ + + + + R I V + D + Sbjct: 57 IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHELDHL GI+ Sbjct: 110 KKISLKLTDFQAQIVQHELDHLEGIII 136 >gi|154343115|ref|XP_001567503.1| polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064835|emb|CAM42941.1| putative polypeptide deformylase-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 271 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 32 IDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMV---FINPKIITFSDDFS 88 + ++ ++ + + +A + +++I V Sbjct: 82 LMDLKQLATNLHCLSFSAPKAHWDAAVLLIKSNPDEVEYEVWVNPSVPGYDDRNAVAPMY 141 Query: 89 VYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 E C+S A V R IT R + + + ++ DG+ A CL HELDHL G Sbjct: 142 GMWENCISCGTATAWVVRPQRITCRGYNEHGREKVQVLDGMRARCLMHELDHLMGKTIF 200 >gi|110798606|ref|YP_695205.1| peptide deformylase [Clostridium perfringens ATCC 13124] gi|168217422|ref|ZP_02643047.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] gi|110673253|gb|ABG82240.1| polypeptide deformylase [Clostridium perfringens ATCC 13124] gi|182380515|gb|EDT77994.1| polypeptide deformylase [Clostridium perfringens NCTC 8239] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V +L + S E + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + +NP I+ + + + R I V Y+D Sbjct: 55 ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|306831575|ref|ZP_07464733.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426360|gb|EFM29474.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + L V + +G+AA IGV R ++ Sbjct: 1 MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ NP ++ S F + +R I V ++D N Sbjct: 58 VNMGGADLV-----MFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQRIEVSFLDKNWN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136 >gi|322390160|ref|ZP_08063692.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] gi|321143120|gb|EFX38566.1| peptide deformylase [Streptococcus parasanguinis ATCC 903] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 +KK +V +L + S + L ++ + + + + +GLAA IGV R Sbjct: 1 MKKNIVK---NVLFLGQKSEEAT---PEDRTLALDLQDTLNAHLLECVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++I + + NP ++ + + + R +TV Y D Sbjct: 55 AIIIRMGNENLV-----MFNPVLLEKKKPYQTEEGCLSLVGSRP--TTRYEEMTVAYRDV 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + I+ G A QHE+DHL G++ Sbjct: 108 NWKAKTIHLSGFPAQICQHEMDHLEGVII 136 >gi|319939828|ref|ZP_08014184.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] gi|319811041|gb|EFW07356.1| peptide deformylase [Streptococcus anginosus 1_2_62CV] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + KP+V D +L++ ++P K + I ++ + + +G+AA IGV R+ Sbjct: 1 MIKPIVK--DMLVLQQKAQPASKEDVGIGQ---DLFDTLRANQDKCVGMAANMIGVQKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ P++ NP + S + + R ITV Y+D + Sbjct: 56 IILMY-----DVIPVIMFNPILKRKSSPYRAEESCLSLAGSRL--TTRYKEITVEYLDQH 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q + A QHELDHL GIL Sbjct: 109 WRKQTLTLKDFPAQICQHELDHLEGILI 136 >gi|229818453|ref|ZP_04448734.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] gi|229784323|gb|EEP20437.1| hypothetical protein BIFANG_03760 [Bifidobacterium angulatum DSM 20098] Length = 141 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLV 59 +++P+ P+L + S +D+ + ++ + + +G+AA IG R+ Sbjct: 1 MQRPITTS-IPLLSQPSEEAHSTEADL-AVAQDLKDTLDAHRNGCVGMAANMIGEHKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D + NP+I + + + R R I V YMD Sbjct: 58 -IAFVDEELGGRITLMFNPRITAQDGAYDTAEGCLSLNGERR--TLRYQRIEVDYMDRRW 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH +G++ Sbjct: 115 RERHATFTGFTAQIIQHEIDHCDGVII 141 >gi|328468001|gb|EGF39025.1| peptide deformylase [Lactobacillus helveticus MTCC 5463] Length = 137 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M K ++ D + L + S N + +N ++ + + +GLAA IG R Sbjct: 1 MAVKKIIY--DQVFLSQKS---TLANKEDLNTALDLCDTLLANRSKAVGLAANMIGQSKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P + INPKI+ S + + + R ITV Y + Sbjct: 56 IIAFYI-----GSLPFMMINPKIVRKSGKYMTEEGCLSLSGQRQ--TVRYKEITVTYQNL 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + + +A +QHE+DH +GIL Sbjct: 109 DFKEVTQDFSEFIAETIQHEVDHCDGILI 137 >gi|168209867|ref|ZP_02635492.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] gi|170712027|gb|EDT24209.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V +L + S E + + +ID++++ + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRVNLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + +NP I+ + + + R I V Y+D Sbjct: 55 ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|257068452|ref|YP_003154707.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] gi|256559270|gb|ACU85117.1| N-formylmethionyl-tRNA deformylase [Brachybacterium faecium DSM 4810] Length = 240 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 17/131 (12%) Query: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD-------------HAHRKNPMVFINPKII 81 M M + G+GLAA Q+G+ VI+ + ++P + Sbjct: 67 MTVTMRAAPGVGLAAPQVGLPLSFYVIEDRYADEPGEDEVGDLLERRPLPLRALLDPVLE 126 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA----QHQIIYADGLLATCLQHE 137 EGCLS+ +++ V RS + +R + + G A LQHE Sbjct: 127 PLGTQRVYAFEGCLSVDGWQSIVPRSRRVLLRATELLGDGSLREVEEEHVGWTARILQHE 186 Query: 138 LDHLNGILFID 148 DHL G L D Sbjct: 187 TDHLAGTLCHD 197 >gi|309805350|ref|ZP_07699400.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] gi|308165350|gb|EFO67583.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] Length = 95 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + D + V R+ + ++Y + + + I G A HE+DHLNG LF D + Sbjct: 20 EGCLSVDKDIQGYVPRAYKLKIKYQTVDGEQKQISLKGYPAIVASHEIDHLNGHLFYDRI 79 Query: 151 SR 152 + Sbjct: 80 DK 81 >gi|225870619|ref|YP_002746566.1| peptide deformylase [Streptococcus equi subsp. equi 4047] gi|225700023|emb|CAW94040.1| peptide deformylase [Streptococcus equi subsp. equi 4047] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L++ ++P K + I + + L Y +GLAA IG R+++ Sbjct: 1 MIKKIVK--DTFFLQQKAQPATKKDLWIGQDLQDTLA-YYRDSCLGLAANMIGENKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + +V NP +I + F + I + KR I V Y+D + Sbjct: 58 ISM-----GFVDLVMFNPVLIAKREAFEAEESCLSLIGQRK--TKRYQEIKVDYLDAHWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 111 KKSLRLTGLPAQICQHELDHLEGILI 136 >gi|324993584|gb|EGC25504.1| peptide deformylase [Streptococcus sanguinis SK405] gi|324995104|gb|EGC27016.1| peptide deformylase [Streptococcus sanguinis SK678] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + IGLAA IGV R ++ P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRAIIFLY-----GLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + + +R ITV Y+D N Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GIL Sbjct: 127 ELDHLEGILI 136 >gi|289168375|ref|YP_003446644.1| predicted polypeptide deformylase [Streptococcus mitis B6] gi|288907942|emb|CBJ22782.1| predicted polypeptide deformylase [Streptococcus mitis B6] Length = 136 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 19/150 (12%) Query: 2 VKKPLVI---FPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLY 56 ++K +V F L +VS+P + + + L ++ + +GLAA IGV Sbjct: 1 MEKKIVKDLLF----LSQVSQPASQED---LYLARDLQDTLLANRETCVGLAANMIGVQK 53 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 R+++ + P+V NP +++F + + KR I V Y D Sbjct: 54 RVIIFN-----LGLVPVVMFNPVLLSFDGLYETEEGCLSLTGVRP--TKRYETIRVAYRD 106 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 107 SKWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|322392329|ref|ZP_08065790.1| peptide deformylase [Streptococcus peroris ATCC 700780] gi|321144864|gb|EFX40264.1| peptide deformylase [Streptococcus peroris ATCC 700780] Length = 141 Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L +VSRP + + + + + L+ +GLAA IGV R+++ + PM Sbjct: 17 LSQVSRPASQEDLPLAKDLQDTLQANK-ETCVGLAANMIGVQKRVIIFN-----LGMIPM 70 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + +F + + R ITV Y D + Q Q I G A Sbjct: 71 VMFNPVLQSFEGPYETEEGCLSLAGVRP--TTRYEKITVSYRDIHWQEQTITLTGFPAQI 128 Query: 134 LQHELDHLNGILF 146 QHELDHL G + Sbjct: 129 CQHELDHLEGRII 141 >gi|160914591|ref|ZP_02076805.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] gi|158433131|gb|EDP11420.1| hypothetical protein EUBDOL_00598 [Eubacterium dolichum DSM 3991] Length = 139 Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K ++ D L+ S P K + I D++L+ + + +G+AA IGV + Sbjct: 1 MIKDIMR--DELFLQMKSLPATKEDKGI---ADDLLDTLKANAMQCVGMAANMIGVQKCI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + ++ + ++ I T + V + + A KR I V+Y D + Sbjct: 56 IAFLNKE--SGQYEVMLNPVIIKTSGIAYRVMEGCLSLAGEREA--KRYPQIKVQYYDTD 111 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + +I G A +QHE+DH NGIL Sbjct: 112 MKLKIKSYKGFTAQIIQHEIDHCNGILI 139 >gi|168204531|ref|ZP_02630536.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] gi|170663898|gb|EDT16581.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V IL + S E + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DILFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + +NP I+ + + + R I V Y+D Sbjct: 55 ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH +GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFDGIII 136 >gi|325663348|ref|ZP_08151798.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] gi|325470802|gb|EGC74032.1| peptide deformylase [Lachnospiraceae bacterium 4_1_37FAA] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + KP++ I L + S P K + + +L+D + +G+AA IGV R+ Sbjct: 1 MVKPIMK---DIFFLGQRSDPATKADLQVGRDLMDTL--AANREGCVGMAANMIGVKKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++++ +V NP ++ + + + R I V Y+D N Sbjct: 56 IIVNM-----GFVDVVMFNPVLVRKESPYETEEGCLSLTGVRK--TTRYQTIEVEYLDMN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q + DG A QHELDHL GIL Sbjct: 109 WKKQNLKLDGWTAQICQHELDHLEGILI 136 >gi|222152925|ref|YP_002562102.1| peptide deformylase [Streptococcus uberis 0140J] gi|222113738|emb|CAR41729.1| peptide deformylase [Streptococcus uberis 0140J] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + +V DP L++ S K + + + ++L+ + + +G+AA IG R+ Sbjct: 1 MIRDIVK--DPLFLQQKSALATKED---IKIGTDLLDTLAYHRENCLGMAANMIGESKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I + + I+ S + E R I V Y+D + Sbjct: 56 IIISMGFVDLVMFNPMIIS-------KKDSFHAEESCLSLSGSRKTTRYKEIKVDYLDHH 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 109 WMKKSLTLTGLPAQVCQHELDHLEGILI 136 >gi|331266006|ref|YP_004325636.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] gi|326682678|emb|CBZ00295.1| polypeptide deformylase, putative [Streptococcus oralis Uo5] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 ++K +V D L +VS+P + + + L ++ + +GLAA IGV R+ Sbjct: 1 MEKKIVR--DVLFLSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGVQKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ + P+V NP ++++ + + R ITV Y D Sbjct: 56 IIFN-----LGLVPIVMFNPILLSYEGPYETEEGCLSLTGVRP--TTRFETITVSYRDSK 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G QHELDHL G + Sbjct: 109 WQEQTITLTGFPVQICQHELDHLEGRII 136 >gi|74025884|ref|XP_829508.1| polypeptide deformylase [Trypanosoma brucei TREU927] gi|70834894|gb|EAN80396.1| polypeptide deformylase, putative [Trypanosoma brucei] Length = 260 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 6/146 (4%) Query: 9 FPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +P L R + +E + + N+ ++ I +A + +V+I Sbjct: 45 YPHRSLTRPALRLERHQVNTPLFHSQLLNLNKMATDLQCISFSAPKGHWDAAIVLIKGHP 104 Query: 66 HAHRKNPM---VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 + E C+S A V R IT +D + Sbjct: 105 NEANFEVWVNPTVPGYDDRHSIAPMYGMWENCISCGACTAWVIRPQSITCSGLDEYGNEK 164 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 DG+ A CL HELDHL+G +D Sbjct: 165 TEVLDGMRARCLMHELDHLSGRTILD 190 >gi|304385668|ref|ZP_07368012.1| peptide deformylase [Pediococcus acidilactici DSM 20284] gi|304328172|gb|EFL95394.1| peptide deformylase [Pediococcus acidilactici DSM 20284] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++K +V + L + S P + + ++L+D + +GLAA IGV +++ Sbjct: 1 MQKNIVRDQN-FLSQKSVPATRADLPTALDLVDTLAANADRA--VGLAANMIGVKKQIIA 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + +NPK+ S + + + R I V+Y D N + Sbjct: 58 VSI-----GVMNIAMLNPKLTKKSHPYQAKEGCLSLTGERS--TTRYKEIEVQYQDLNFK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + G +A +QHE+DH GIL Sbjct: 111 KQTQHFSGWIAEIIQHEIDHCAGILI 136 >gi|149184142|ref|ZP_01862470.1| peptide deformylase [Bacillus sp. SG-1] gi|148848148|gb|EDL62470.1| peptide deformylase [Bacillus sp. SG-1] Length = 86 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 91 QEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + V R + +T++ MD + I GL + +QHE+DHLNG++F DH+ Sbjct: 10 EGCLSVDRQVPGYVPRYSRVTIKGMDIDGNPVKIRLKGLPSIVMQHEIDHLNGVMFYDHI 69 Query: 151 S 151 Sbjct: 70 D 70 >gi|317499718|ref|ZP_07957976.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893024|gb|EFV15248.1| polypeptide deformylase [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + K ++ DP L + S K + ++ ++L+ + + +G+AA IGV ++ Sbjct: 1 MIKDIMK--DPLFLAQKSTDATKAD---QQVVVDLLDTLRANLDHCVGMAANMIGVKKKI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ + + IT +EGCLS+ R KR I V Y+D + Sbjct: 56 IVVAVGPFQFA------MINPKITKKSGVFETEEGCLSLDGVR-PCKRYKEIEVDYLDQD 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 109 FKKQHGKYSGWTAQIIQHEIDHCKGIVI 136 >gi|324990225|gb|EGC22163.1| peptide deformylase [Streptococcus sanguinis SK353] Length = 136 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + IGLAA IGV R+++ P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + + +R ITV Y+D N Q + + GL A QH Sbjct: 69 NPVLRSKSGPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQRTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GIL Sbjct: 127 ELDHLEGILI 136 >gi|320546940|ref|ZP_08041241.1| peptide deformylase [Streptococcus equinus ATCC 9812] gi|320448342|gb|EFW89084.1| peptide deformylase [Streptococcus equinus ATCC 9812] Length = 136 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S + + + + + L + +G+AA IGV R ++ Sbjct: 1 MIKEIVK--DTFFLAQKSEEATEADLYLATDLQDTLNANR-ENCVGMAANMIGVKKRAII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ ++ NP + S F + + +R I V +MD N Sbjct: 58 VNM-----GLGDLIMFNPVMTNKSLPFDTEESCLSLVGSRS--TRRYQKIDVTFMDKNWN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 111 KQSLTLTGLPAQICQHELDHLEGIII 136 >gi|255974264|ref|ZP_05424850.1| peptide deformylase [Enterococcus faecalis T2] gi|255967136|gb|EET97758.1| peptide deformylase [Enterococcus faecalis T2] Length = 89 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 43/65 (66%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 ++ P+VI P+ L+ ++P+ I +I+ L+++M E M + DGIGLAA QIG ++ VI Sbjct: 1 MRYPVVIHPNEHLKMKAQPVTIITDEIVQLLEDMYETMLAHDGIGLAAPQIGKNLQMAVI 60 Query: 62 DLQDH 66 ++ + Sbjct: 61 EIDEE 65 >gi|322821869|gb|EFZ28075.1| polypeptide deformylase-like protein, putative [Trypanosoma cruzi] Length = 260 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 6/145 (4%) Query: 9 FPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +P L R + ++K + + ++ ++ I +A + +V+I Sbjct: 45 YPHRSLTRPALRLDKTQVNTPLFQSQLLSLKKMASDLRCISFSAPKGHWDATVVLIKSHP 104 Query: 66 HAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 V + T E C+S A V R +T D + Sbjct: 105 DEEVFEVWVSPSVPDYDARTSIAPMYGMWENCISCGATAAWVIRPQSVTCSGWDEYGNEK 164 Query: 123 IIYADGLLATCLQHELDHLNGILFI 147 G+ A CL HELDHL+G + Sbjct: 165 TELLGGMRARCLMHELDHLHGKTIL 189 >gi|325978482|ref|YP_004288198.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178410|emb|CBZ48454.1| peptide deformylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 136 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + L V + +G+AA IGV R ++ Sbjct: 1 MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP ++ S F + +R I V ++D N Sbjct: 58 VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQRIEVSFLDKNWN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136 >gi|227530489|ref|ZP_03960538.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] gi|227349594|gb|EEJ39885.1| peptide deformylase [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPIL-RRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP+ D IL ++ + P + + ++ + + L + + IG+AA I + +++ Sbjct: 1 MIKPINH--DQILLQQRAIPATRQDLNVGIDLKDTLNAHH-AECIGMAANMISINKAIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 L MV NP+I + + + + V R I V + D N Sbjct: 58 ASLGP-----INMVMYNPQITQKQEPYQTAEGCLS--LPGKRTVTRYRQIKVTFRDQNWH 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + + A +QHE+DHLNGIL Sbjct: 111 LQTLQLSDIAAEIIQHEIDHLNGILI 136 >gi|317057111|ref|YP_004105578.1| formylmethionine deformylase [Ruminococcus albus 7] gi|315449380|gb|ADU22944.1| formylmethionine deformylase [Ruminococcus albus 7] Length = 136 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V D I L++ S +K + DI+ + + L+ + +G+AA IG R+++ Sbjct: 1 MVREIVH--DVIFLKKKSIKADKNDVDIITDLRDTLKANH-DRCVGMAANMIGFNKRIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +V INP I+ + + + + KR ITV Y D + Sbjct: 58 FT-----AGIMDIVMINPVIVKKAQPYETEEGCLSLTGVRK--TKRWEKITVEYQDTSFN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + G +A +QHE DHL GI+ Sbjct: 111 KKRGDFTGFVAQIIQHECDHLEGIII 136 >gi|270290078|ref|ZP_06196304.1| polypeptide deformylase [Pediococcus acidilactici 7_4] gi|270281615|gb|EFA27447.1| polypeptide deformylase [Pediococcus acidilactici 7_4] Length = 136 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 ++K +V + L + S P + + ++L+D + +GLAA IGV +++ Sbjct: 1 MQKNIVRDQN-FLSQKSVPATRADLPTALDLVDTLAANADRA--VGLAANMIGVKKQIIA 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + +NPK+ S + + + R I V+Y D N + Sbjct: 58 VSI-----GVMNIAMLNPKLTKKSHPYQAKEGCLSLAGERS--TTRYKEIEVQYQDLNFK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + G +A +QHE+DH G+L Sbjct: 111 KQTQHFSGWIAEIIQHEIDHCAGVLI 136 >gi|18309742|ref|NP_561676.1| peptide deformylase [Clostridium perfringens str. 13] gi|168214353|ref|ZP_02639978.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] gi|169344411|ref|ZP_02865380.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium perfringens str. 13] gi|169297331|gb|EDS79440.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495] gi|170714200|gb|EDT26382.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969] Length = 136 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V +L + S E + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + +NP I+ + + + R I V Y+D Sbjct: 55 ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTGFRK--TTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136 >gi|288905492|ref|YP_003430714.1| polypeptide deformylase [Streptococcus gallolyticus UCN34] gi|288732218|emb|CBI13783.1| putative polypeptide deformylase [Streptococcus gallolyticus UCN34] Length = 136 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + L V + +G+AA IGV R+++ Sbjct: 1 MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP ++ S F + +R I V ++D N Sbjct: 58 VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQKIEVSFLDKNWN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGIII 136 >gi|306829860|ref|ZP_07463047.1| peptide deformylase [Streptococcus mitis ATCC 6249] gi|304427871|gb|EFM30964.1| peptide deformylase [Streptococcus mitis ATCC 6249] Length = 136 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L +VS+P + + + L ++ + +GLAA IG R+++ + Sbjct: 12 LSQVSKPASQED---LYLAKDLQDTLLANRETCVGLAANMIGEQKRVIIFN-----LGLV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 PMV NP ++++ + + R I V Y D Q Q I G A Sbjct: 64 PMVMFNPILLSYKGPYETEEGCLSLTGVRP--TTRYETIKVSYRDSKWQEQTITLTGFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL G + Sbjct: 122 QICQHELDHLEGRII 136 >gi|295425019|ref|ZP_06817727.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] gi|295065294|gb|EFG56194.1| peptide deformylase [Lactobacillus amylolyticus DSM 11664] Length = 137 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDP-ILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M + ++ D L+R S+P K + +I ++L D ++ +GLAA IG R+ Sbjct: 1 MAAQNIIH--DQMFLQRKSQPATKADLNIAIDLRDTLIAKRNLA--LGLAANMIGKDKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + MV INP+II + + + + KR I V + N Sbjct: 57 IAFYVGP-----LAMVMINPRIIDKEERYITKEGCLSLSGERS--TKRYKKIRVSFQTMN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 +++ DGL + +QHE+DH +GIL Sbjct: 110 FENRTQEFDGLTSEVIQHEIDHCDGILI 137 >gi|22537481|ref|NP_688332.1| peptide deformylase [Streptococcus agalactiae 2603V/R] gi|22534360|gb|AAN00205.1|AE014253_3 polypeptide deformylase, putative [Streptococcus agalactiae 2603V/R] Length = 136 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ E +++ +AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQETLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I+ +V NP ++ SD + + + +R IT+ Y D N Sbjct: 56 IIIN-----VGITNLVMFNPVVVAKSDPYETEESCLSLVGCRS--TQRYCHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|268608180|ref|ZP_06141907.1| peptide deformylase [Ruminococcus flavefaciens FD-1] Length = 137 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + + +V DP +L R S P + M+ + ++L+ S +G+AA IGV + Sbjct: 1 MVREIVR--DPLVLGRKSEP---AGKEDMHTVRDLLDTLAANSDRCVGMAANMIGVHKTI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V + A INPKI S D +EGCLS+ R V+R FITV Y+D Sbjct: 56 LVAAVGGKAVA-----MINPKITDKSKDTYDTEEGCLSLDGVR-PVQRYKFITVEYLDHR 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH +G + Sbjct: 110 FKKKKQTFRDFEAQIIQHEIDHFSGRII 137 >gi|292557811|gb|ADE30812.1| Formylmethionine deformylase [Streptococcus suis GZ1] Length = 163 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P++ I L++ S P +++ + + + L +G+AA IGV R++ Sbjct: 28 MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLAANAHA-CVGMAANMIGVKKRII 83 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ NP +I+ + + + + R I V + D + Sbjct: 84 IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASW 136 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHELDHL GI+ Sbjct: 137 KKISLKLTDFQAQIVQHELDHLEGIII 163 >gi|254520028|ref|ZP_05132084.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] gi|226913777|gb|EEH98978.1| polypeptide deformylase [Clostridium sp. 7_2_43FAA] Length = 136 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V IL + S K + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DILFLGQKSEYATKAD---VAVIDDLVDTLRANLEQCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + D + D E R I V Y+D Sbjct: 55 ILVFSIGDIIVPMV-------NPVIVKKDKVYEAEESCLSLSGFRKTMRYEAIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKQTFTGFTAQVIQHEIDHFEGIII 136 >gi|253579091|ref|ZP_04856362.1| polypeptide deformylase [Ruminococcus sp. 5_1_39B_FAA] gi|251850034|gb|EES77993.1| polypeptide deformylase [Ruminococcus sp. 5_1_39BFAA] Length = 136 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + K +V I L + S+P K + I + + L+ +G+AA IGV ++ Sbjct: 1 MVKQIVR---DIFFLGQPSKPATKADIQIGKDLQDTLQANREW-CVGMAANMIGVRKNII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V NP I++ D + + D R I V Y D N Sbjct: 57 IVNM-----GFIDVVMFNPVIVSKHDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFNW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A QHE+DHL+G + Sbjct: 110 KKQRQKLSGWTAQICQHEIDHLSGKII 136 >gi|262283351|ref|ZP_06061117.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] gi|262260842|gb|EEY79542.1| peptide deformylase [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 17/146 (11%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVV 60 K ++ L++ S K + + L ++ + + +GLAA IGV R+++ Sbjct: 6 VKDIL-----FLQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 P++ NP + S + + + R ITV Y+D N Q Sbjct: 58 FMY-----GMVPIIMFNPVLRAKSGPYQTEEGCLSLVGSRS--TTRYQEITVDYLDRNWQ 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q I A QHELDHL GIL Sbjct: 111 PQTITLKDFPAQICQHELDHLEGILI 136 >gi|228477893|ref|ZP_04062507.1| polypeptide deformylase [Streptococcus salivarius SK126] gi|228250383|gb|EEK09623.1| polypeptide deformylase [Streptococcus salivarius SK126] Length = 136 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + LE +G+AA IGV R+++ Sbjct: 1 MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CLGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP +++ S F + + KR I V Y+D Sbjct: 58 VNI-----GFVNLVMFNPILVSKSSPFQTEESCLS--LEGSRPTKRYESIEVAYLDEQWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+ A +QHELDHL GI+ Sbjct: 111 PKQLSFSGMPAQIIQHELDHLEGIII 136 >gi|182624168|ref|ZP_02951955.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] gi|177910784|gb|EDT73144.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721] Length = 136 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + +P+V +L + S E + + +ID++++ + + +G+AA IGV R Sbjct: 1 MIRPIVK---DVLFLGQKS---ELATKEDIGIIDDLVDTLRANLESCVGMAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + + +NP I+ + + + R I V Y+D Sbjct: 55 ILVFSI-----GNIIVPMVNPVILKKEKSYETEESCLSLTRFRK--TTRYEIIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + G A +QHE+DH GI+ Sbjct: 108 NFKKHKETFSGFTAQIIQHEVDHFEGIII 136 >gi|227893768|ref|ZP_04011573.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] gi|227864413|gb|EEJ71834.1| peptide deformylase [Lactobacillus ultunensis DSM 16047] Length = 137 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M + ++ D L + S N + + +++ + GLAA IG R Sbjct: 1 MTAQNIIH--DQLFLSQKS---TIANKGDLKIAEDLRDTLLANRNKAAGLAANMIGKSKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + P + INP+II S ++ + D + KR ITV Y + Sbjct: 56 IIAFYVGP-----FPFLMINPQIIKKSGEYLAKEGCLS--LDGEREAKRYEKITVSYQNL 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G +A +QHE+DH NGIL Sbjct: 109 NFEKETQSFSGFVAETIQHEVDHCNGILI 137 >gi|223932640|ref|ZP_03624640.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|330832215|ref|YP_004401040.1| peptide deformylase [Streptococcus suis ST3] gi|223898750|gb|EEF65111.1| formylmethionine deformylase [Streptococcus suis 89/1591] gi|329306438|gb|AEB80854.1| peptide deformylase [Streptococcus suis ST3] Length = 136 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + +P++ I L++ S P +++ + + + L +G+AA IG+ R++ Sbjct: 1 MIQPIMK---DIFFLQQKSEPATQLDVQVGQDLQDTLSANAHA-CVGMAANMIGIKKRII 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ NP +I+ + + + + R I V ++D + Sbjct: 57 IVNMGFTNLV-----MYNPVLISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFLDASW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHELDHL GI+ Sbjct: 110 KKISLKLTDFQAQIVQHELDHLEGIII 136 >gi|258513851|ref|YP_003190073.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] gi|257777556|gb|ACV61450.1| peptide deformylase [Desulfotomaculum acetoxidans DSM 771] Length = 74 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 1 MVKKPLVIF-PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M + ++ + + ILR+ +R IEK + I+ + NM E MY+ + GLAA Q+ +L RLV Sbjct: 1 MALRNIMNYQTNDILRKKTRTIEKFYNRILTSLKNMAETMYNANETGLAATQVAILRRLV 60 Query: 60 VI 61 VI Sbjct: 61 VI 62 >gi|227889181|ref|ZP_04006986.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] gi|227850410|gb|EEJ60496.1| peptide deformylase [Lactobacillus johnsonii ATCC 33200] Length = 137 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 13/148 (8%) Query: 1 MVKKPLVIFPDPI-LRRVSRPIEKINSDIMN-LIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 M K ++ D + L+ S P K + L D +L Y GLAA IGV R+ Sbjct: 1 MAVKLIIH--DELSLKFKSLPATKQDLGAATDLKDTLLANKYRA--AGLAANMIGVQKRI 56 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + + P+V +NP I+ D + Y+ + +R ITV+Y + N Sbjct: 57 IALFIGP-----LPIVMLNPIIVAQDDKYLAYEGCLSLTGERP--TERYKNITVKYQNEN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + A +QHE+DH NGIL Sbjct: 110 LETRQQSFSDFTAEVIQHEVDHCNGILI 137 >gi|182684506|ref|YP_001836253.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|307127760|ref|YP_003879791.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] gi|182629840|gb|ACB90788.1| peptide deformylase [Streptococcus pneumoniae CGSP14] gi|306484822|gb|ADM91691.1| polypeptide deformylase [Streptococcus pneumoniae 670-6B] Length = 136 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|169837912|ref|ZP_02871100.1| hypothetical protein cdivTM_12604 [candidate division TM7 single-cell isolate TM7a] Length = 68 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 + A QHE DH+ GILF D LS L + ++ KK+ L + Sbjct: 18 MWARAFQHEFDHIEGILFTDRLSILNKRLVAKKLDVLKK 56 >gi|302876100|ref|YP_003844733.1| formylmethionine deformylase [Clostridium cellulovorans 743B] gi|307686823|ref|ZP_07629269.1| peptide deformylase [Clostridium cellulovorans 743B] gi|302578957|gb|ADL52969.1| formylmethionine deformylase [Clostridium cellulovorans 743B] Length = 136 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + KP+V +L + S K + + ++D++++ + S + +GLAA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEEATKND---IVVVDDLIDTLRSNLENCVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + D + INP I+ + + I + KR I V Y+D Sbjct: 55 ILVFTIGD-----IIVPMINPVILKKEKLYETEESCLSLIGFRK--TKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + Q G A +QHE+DH GI+ Sbjct: 108 AFKKQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|307704401|ref|ZP_07641314.1| polypeptide deformylase family protein [Streptococcus mitis SK597] gi|307622045|gb|EFO01069.1| polypeptide deformylase family protein [Streptococcus mitis SK597] Length = 136 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+ + + ++L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQSASQED---LHLARDLQDTLLANRETCVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGPYETEEGCLSLVGVRP--TKRYETIRVAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|76787753|ref|YP_329975.1| peptide deformylase [Streptococcus agalactiae A909] gi|76799363|ref|ZP_00781521.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77414517|ref|ZP_00790664.1| polypeptide deformylase [Streptococcus agalactiae 515] gi|76562810|gb|ABA45394.1| polypeptide deformylase [Streptococcus agalactiae A909] gi|76585283|gb|EAO61883.1| polypeptide deformylase [Streptococcus agalactiae 18RS21] gi|77159440|gb|EAO70604.1| polypeptide deformylase [Streptococcus agalactiae 515] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I+ +V NP ++ SD + + + +R IT+ Y D N Sbjct: 56 IIIN-----VGITNLVMFNPVLVAKSDPYETEESCLSLVGCRS--TQRYHHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|289676937|ref|ZP_06497827.1| peptide deformylase [Pseudomonas syringae pv. syringae FF5] Length = 79 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 2 VKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58 + ++ D L R++ P+ +S++ LI +M E M+S G+GLAA QIG+ +L Sbjct: 1 MIHKILKMGDERLLRIAPPVPAEMFGSSELDTLIADMFETMHSVGGVGLAAPQIGIDLQL 60 Query: 59 VVIDLQDHAHRKN 71 V+ + + Sbjct: 61 VIFGFERNERYPQ 73 >gi|94994165|ref|YP_602263.1| peptide deformylase [Streptococcus pyogenes MGAS10750] gi|94547673|gb|ABF37719.1| Peptide deformylase [Streptococcus pyogenes MGAS10750] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +L++ ++ +K + I + + L Y + +G+AA IG R+V++ Sbjct: 1 MIREIITD-HFLLKQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + + +R ITV Y+D N + Sbjct: 59 SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLNLTGLTAQICQHELDHLEGILI 136 >gi|322517336|ref|ZP_08070211.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] gi|322124033|gb|EFX95586.1| peptide deformylase [Streptococcus vestibularis ATCC 49124] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + LE +G+AA IGV R+++ Sbjct: 1 MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP +++ S F + + +R I V Y+D Sbjct: 58 VNI-----GFVNLVMFNPVLVSKSSPFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+ A +QHELDHL GI+ Sbjct: 111 LKQLNFSGMPAQIIQHELDHLEGIII 136 >gi|71419099|ref|XP_811066.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener] gi|70875688|gb|EAN89215.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P L P++ + +I+ + L A QIG ++ + Sbjct: 72 PIVQLPARSLWCKQYPLDPAQVRSGGFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131 Query: 62 DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102 P+ + + E C S Sbjct: 132 FDGSVFINPVNLDLLEVEAAGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++R A + +R + + + + + A HELDHL+G+LF + Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLSGVLFTRRIPD 241 >gi|291547509|emb|CBL20617.1| N-formylmethionyl-tRNA deformylase [Ruminococcus sp. SR1/5] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S P K + + + + L+ +G+AA IGV +++ Sbjct: 1 MVKQIVR--DVFFLGQPSEPATKADIQVGKDLQDTLQANRER-CVGMAANMIGVKKNIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP I++ D + + D R I V Y D + Sbjct: 58 VNM-----GFINVVMFNPVIVSKRDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFKWK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q G A QHE+DHL+G + Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136 >gi|25011446|ref|NP_735841.1| peptide deformylase [Streptococcus agalactiae NEM316] gi|77411175|ref|ZP_00787527.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|24412984|emb|CAD47063.1| unknown [Streptococcus agalactiae NEM316] gi|77162793|gb|EAO73752.1| polypeptide deformylase [Streptococcus agalactiae CJB111] gi|319745273|gb|EFV97591.1| peptide deformylase [Streptococcus agalactiae ATCC 13813] Length = 136 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +AA IG L R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSLKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I+ +V NP ++ SD + + + +R IT+ Y D N Sbjct: 56 IIIN-----VGITNLVMFNPVLVAKSDPYETEESCLSLVGCRS--TQRYRHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|325679773|ref|ZP_08159347.1| peptide deformylase [Ruminococcus albus 8] gi|324108588|gb|EGC02830.1| peptide deformylase [Ruminococcus albus 8] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + K +V D I L++ S K ++ M +I ++ + + + +AA IG R+ Sbjct: 1 MVKEIVK--DIIFLKKKSV---KADTKDMQIITDLQDTLKANHDRCVGMAANMIGYSKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ +V INP I+ + + + + KR ITV Y+D + Sbjct: 56 IIFT-----AGIMDIVMINPVIVKKARPYETEEGCLSLTGVRK--TKRWEMITVEYLDTS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE DHL+GI+ Sbjct: 109 FKKKRGDFTGFVAQIIQHECDHLDGIII 136 >gi|321399682|emb|CAC22626.2| putative peptide deformylase [Leishmania major strain Friedlin] Length = 501 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 26/170 (15%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ P L R+ + ++ + LI + E + ++A Q G ++ + Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------------------EGCLSIPDY 100 D++ NP+ + + E C S Sbjct: 274 F--DNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFL 331 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + +R +D + + + D + A HELDHL G+LF + Sbjct: 332 LHYIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381 >gi|76363764|ref|XP_888591.1| hypothetical protein [Leishmania major strain Friedlin] Length = 501 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 26/170 (15%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ P L R+ + ++ + LI + E + ++A Q G ++ + Sbjct: 214 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVREARHYYQYPSMSAPQTGWNVQMFTL 273 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQ---------------------EGCLSIPDY 100 D++ NP+ + + E C S Sbjct: 274 F--DNSVFINPVNLDEEVWRAEAARQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFL 331 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + +R +D + + + D + A HELDHL G+LF + Sbjct: 332 LHYIERPLTVRMRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 381 >gi|153811559|ref|ZP_01964227.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] gi|149832300|gb|EDM87385.1| hypothetical protein RUMOBE_01951 [Ruminococcus obeum ATCC 29174] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S P K + + + + L +G+AA IGV +++ Sbjct: 1 MVKQIVR--DVFFLGQPSEPATKADIQVGKDLQDTLRANRER-CVGMAANMIGVKKNIII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP I++ D + + D R I V Y D N + Sbjct: 58 VNM-----GFIDVVMFNPVIVSKHDMYETEEGCLS--LDGVRKTTRYQEIEVEYYDFNWK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q G A QHE+DHL+G + Sbjct: 111 KQRQKLSGWTAQICQHEIDHLSGKII 136 >gi|15858848|gb|AAK13239.1| peptide deformylase-like protein DefA [Streptococcus pneumoniae] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANRDTCVGLAANIIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|77406283|ref|ZP_00783349.1| polypeptide deformylase [Streptococcus agalactiae H36B] gi|77175095|gb|EAO77898.1| polypeptide deformylase [Streptococcus agalactiae H36B] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + KP+V D L++ S+ + + ++L ++ + +++ +AA IG R+ Sbjct: 1 MIKPIVR--DTFFLQQKSQMASRAD---VSLAKDLQDTLHANQNYCVGMAANMIGSXKRV 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++I + + + ++ D +E CLS+ R +R IT+ Y D N Sbjct: 56 III------NVGITNLVMXNPVLVAKSDPYETEESCLSLVGCR-STQRYHHITISYRDIN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q I A QHELDHL GIL Sbjct: 109 WKEQQIKLTDFPAQICQHELDHLEGILI 136 >gi|139438029|ref|ZP_01771582.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] gi|133776226|gb|EBA40046.1| Hypothetical protein COLAER_00569 [Collinsella aerofaciens ATCC 25986] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + KP++ + LR S ++ +L+D + E + + +GLAA IGV R++ Sbjct: 1 MIKPIMKS-EFFLRLPSEDAGPDDAVTGQDLLDTLHE--HEHECVGLAANMIGVRKRIIC 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + A NP+I+ + + + I + R I V Y+D N Sbjct: 58 VKDGNRALL-----MYNPQILEQVNAYQTSEGCLSLIGERP--CTRYRRIKVEYLDENFV 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 H+I G A +QHE+DH NGI+ Sbjct: 111 HRIKNFSGYTAEVIQHEIDHCNGIVI 136 >gi|71422988|ref|XP_812306.1| metalloprotease-like protein [Trypanosoma cruzi strain CL Brener] gi|70877072|gb|EAN90455.1| metalloprotease-like protein, putative [Trypanosoma cruzi] Length = 366 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 22/170 (12%) Query: 5 PLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P+V P L P++ + +I+ + L A QIG ++ + Sbjct: 72 PIVQLPARSLWCKQYPLDPEQVRSGGFAEMIERVRAARQYYQYPSLCAPQIGWNVQMFTL 131 Query: 62 DLQDHAHRK----------------NPMVFINPKIITFSDD---FSVYQEGCLSIPDYRA 102 P+ + + E C S Sbjct: 132 FDGSVFINPVNLDLLELEAAGSRSGMPIAEAEAQWVASCRREGKTCFAWEPCASCCFLMH 191 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152 ++R A + +R + + + + + A HELDHL G+LF + Sbjct: 192 YIERPATVRIRAIGADGHPFEVTLEKMRARMALHELDHLGGVLFTRRIPD 241 >gi|225026504|ref|ZP_03715696.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] gi|224956192|gb|EEG37401.1| hypothetical protein EUBHAL_00753 [Eubacterium hallii DSM 3353] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 10/134 (7%) Query: 14 LRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L++ + P K + + +L+D + T +G+AA IGV R++ +++ Sbjct: 12 LKKKAVPATKDDMPVVQDLLDTLKA--NETGCVGMAANMIGVNKRIIAVNM-----GFAN 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 + +NP I++ + + + + R I V Y D + + Q G +A Sbjct: 65 IAMLNPVIVSKKEPYEAEEGCLSLKGVRK--TTRYQEIEVEYEDIHFKKQHQKYKGWVAQ 122 Query: 133 CLQHELDHLNGILF 146 +QHE+DH GI+ Sbjct: 123 IIQHEVDHCEGIII 136 >gi|327473594|gb|EGF19014.1| peptide deformylase [Streptococcus sanguinis SK408] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + IGLAA IGV R+++ P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANQENCIGLAANMIGVRKRVIIFLY-----GLVPIVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + + + +R ITV Y+D N Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQTEEGCLSLVGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|312864304|ref|ZP_07724538.1| peptide deformylase [Streptococcus vestibularis F0396] gi|311100305|gb|EFQ58514.1| peptide deformylase [Streptococcus vestibularis F0396] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + LE +G+AA IGV R+++ Sbjct: 1 MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP +++ S F + + +R I V Y+D Sbjct: 58 VNI-----GFVNLVMFNPVLVSKSSLFQTEESCLS--LEGSRPTRRYESIEVAYLDEQWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+ A +QHELDHL GI+ Sbjct: 111 LKQLNFSGMPAQIIQHELDHLEGIII 136 >gi|58336410|ref|YP_192995.1| peptide deformylase [Lactobacillus acidophilus NCFM] gi|58253727|gb|AAV41964.1| polypeptide deformylase [Lactobacillus acidophilus NCFM] Length = 137 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M K ++ D L + S N+ M + ++ + GLAA IG R Sbjct: 1 MAVKNIIH--DQLFLMQKS---TLANAKDMQVAVDLRDTLLANRNKAAGLAANMIGEAKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ + PMV NPKII +++ + + VKR ITV+Y + Sbjct: 56 IIAFYI-----VGMPMVMFNPKIIQKGNEYLATEGCLSLNGERP--VKRYEHITVKYQNI 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N +++ G +A +QHE+DH +G + Sbjct: 109 NLEYETQEFSGFVAETIQHEIDHCDGKII 137 >gi|295106023|emb|CBL03566.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 139 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 8/145 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60 + K LV + IL S+P E ++ + ++L+ + LAA QIGV ++V Sbjct: 1 MIKELVTD-EAIL---SQPCETATAEDAVVAQDLLDTLASLDEAACLAANQIGVAKAVIV 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 ++ + + + S VK V + + Sbjct: 57 YHDENEQPHVMYNPVLKQALGAYKTVEGCLTLESESKVTRYERVKVVYDELVDGALVSRK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 G A +QH +DH G L Sbjct: 117 ---RDFTGWTAELIQHMIDHCKGKL 138 >gi|229815989|ref|ZP_04446311.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM 13280] gi|229808448|gb|EEP44228.1| hypothetical protein COLINT_03043 [Collinsella intestinalis DSM 13280] Length = 153 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K LV + IL P +++I +L+D +L + + LAA QIGV + Sbjct: 15 MIKELVKD-EAILSTPCEPATAADAEIAQDLVDTLLSIEDAA---CLAANQIGVTKAICA 70 Query: 61 IDLQDHAH--RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + + NP V + + + V + + Sbjct: 71 LADDEGNTLVMYNPKVLFGMGAFKAEESCLTREGSVRVTRFVKIKVAYDELVDGEF---- 126 Query: 119 AQHQIIYADGLLATCLQHELDHLNGIL 145 + + A +QH DH G L Sbjct: 127 -KPRKRDFVEWPAELIQHMCDHCQGKL 152 >gi|328945770|gb|EGG39921.1| peptide deformylase [Streptococcus sanguinis SK1087] Length = 136 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 L++ S + + + + + L+ + +GLAA IGV R+++ P+ Sbjct: 12 LQQPSEQASREDLYLAQDLQDTLQTNR-ENCLGLAANMIGVRKRVIIFLY-----GLVPV 65 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V NP + S + + +R ITV Y+D N Q Q + GL A Sbjct: 66 VMFNPVLRYKSGPYQTEEGCLSLTGSRL--TQRYQEITVDYLDKNWQQQTMTLKGLPAQI 123 Query: 134 LQHELDHLNGILF 146 QHELDHL GI+ Sbjct: 124 CQHELDHLEGIII 136 >gi|291523053|emb|CBK81346.1| N-formylmethionyl-tRNA deformylase [Coprococcus catus GD/7] Length = 136 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPI--LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + + + I L + S P + + + + L+ + +G+AA IG+ ++ Sbjct: 1 MVRKITK---DIFFLGQKSEPATEADIQTGRDLQDTLKAHR-AECVGMAANMIGIKKNVI 56 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++++ +V NP ++ S + + + R I V Y D + Sbjct: 57 IVNM-----GIVDLVMFNPVLLKKSGPYETEEGCLSLTGVRK--TTRYREIEVEYRDMSW 109 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + G A QHE+DHLNGI+ Sbjct: 110 TVRRQKLSGWTAQICQHEMDHLNGIII 136 >gi|171741144|ref|ZP_02916951.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283455486|ref|YP_003360050.1| peptide deformylase [Bifidobacterium dentium Bd1] gi|306823442|ref|ZP_07456817.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|309802744|ref|ZP_07696848.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] gi|171276758|gb|EDT44419.1| hypothetical protein BIFDEN_00211 [Bifidobacterium dentium ATCC 27678] gi|283102120|gb|ADB09226.1| fms Peptide deformylase [Bifidobacterium dentium Bd1] gi|304553149|gb|EFM41061.1| peptide deformylase [Bifidobacterium dentium ATCC 27679] gi|308220808|gb|EFO77116.1| peptide deformylase [Bifidobacterium dentium JCVIHMP022] Length = 141 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLV 59 +++ ++ P L + SR + + D + ++ + + + +AA IGV R+ Sbjct: 1 MQREIMTS-IPFLEQPSRDAQNTDEDF-AVAQDLKDTLDAHRNSCVGMAANMIGVSKRI- 57 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 I D + NP+I F + R I V Y D Sbjct: 58 -IAFVDEDFGGRIFIMFNPEITARDGAFDTSEGCLS--LQGERHTVRHQRIEVTYFDRKF 114 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + G A +QHE+DH GI+ Sbjct: 115 RERHAAFTGFTAQIIQHEVDHCAGIII 141 >gi|56808912|ref|ZP_00366621.1| COG0242: N-formylmethionyl-tRNA deformylase [Streptococcus pyogenes M49 591] gi|209559224|ref|YP_002285696.1| peptide deformylase [Streptococcus pyogenes NZ131] gi|209540425|gb|ACI61001.1| Peptide deformylase [Streptococcus pyogenes NZ131] Length = 136 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +L++ ++ +K + I + + L Y + G+AA IG R+V++ Sbjct: 1 MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECFGMAANMIGEQKRIVIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + + +R ITV Y+D N + Sbjct: 59 SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136 >gi|196019297|ref|XP_002118957.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] gi|190577546|gb|EDV18557.1| hypothetical protein TRIADDRAFT_62935 [Trichoplax adhaerens] Length = 395 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 5/141 (3%) Query: 16 RVSRPIEKINSDI--MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPM 73 +++R + KI + LI EV+ + + ++ + + N + Sbjct: 18 KITRKVPKIKEENGKKQLIGIEEEVVKDNNTSPDL---VIERKPYFFLNPKIKLNHNNEI 74 Query: 74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATC 133 V + + G ++ + + C Sbjct: 75 VLPEGCLSVPMESIFKEYNGNSNVKRPEVIEIEYINENLEKEIMKIDGSKDDYWKWFSRC 134 Query: 134 LQHELDHLNGILFIDHLSRLK 154 QHE DHL+G+LF+D L + K Sbjct: 135 AQHENDHLDGVLFVDRLEKEK 155 >gi|146076416|ref|XP_001462921.1| metalloprotease-like protein [Leishmania infantum] gi|134067002|emb|CAM65107.1| metalloprotease-like protein [Leishmania infantum JPCM5] gi|322496349|emb|CBZ31420.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 393 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 22/168 (13%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ P L R+ + ++ + L+ + E + ++A Q G ++ + Sbjct: 106 PIIQLPARSLWCRQYALDARRVAQGEYAGLVSQVREARHYYQYPSMSAPQTGWNVQMFTL 165 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVY-------------------QEGCLSIPDYRA 102 + + S E C S Sbjct: 166 FDNSVFINPVNLDEEAWRAEAAQQGMSWVAFEEEKMRELRTEGLTGFAWEPCASSGFLLH 225 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + VR +D + + + D + A HELDHL G+LF + Sbjct: 226 YIERPLTVRVRALDEHGKPFTVTLDKMRARMALHELDHLQGVLFTRRV 273 >gi|239621615|ref|ZP_04664646.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515490|gb|EEQ55357.1| N-formylmethionyl-tRNA deformylase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 128 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 9/134 (6%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 R S E +I+++++ + +G+AA IGV R+ I D Sbjct: 2 RTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGRI 56 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V +NP I F + + R R I V Y D + + G A Sbjct: 57 TVMLNPVITASDGAFDTQEGCLSLTGERR--TLRYRRIEVNYEDRRFRARHATFTGWTAQ 114 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 115 IIQHEVDHCNGIII 128 >gi|328955181|ref|YP_004372514.1| formylmethionine deformylase [Coriobacterium glomerans PW2] gi|328455505|gb|AEB06699.1| formylmethionine deformylase [Coriobacterium glomerans PW2] Length = 139 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 8/145 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEV-MYSTDGIGLAAVQIGVLYRLVV 60 + K LV D L S+P + ++ L ++L+ LAA QIG L Sbjct: 1 MIKELVR--DQALL--SQPAKPATAEDAALAKDLLDTLASLEHAGCLAANQIGALKA--- 53 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I + + ++F + + S P + D + Sbjct: 54 ICVYSDERNEPHVMFNPRLLFGLGASKMREECLTKSEPVTVTRYAKVKIQFDELADGALK 113 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + G A +QH +DH G L Sbjct: 114 TRKRDFTGYTAQMIQHMIDHCRGRL 138 >gi|327488979|gb|EGF20775.1| peptide deformylase [Streptococcus sanguinis SK1058] Length = 136 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + IGLAA IGV R+++ P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + + + +R IT+ Y+D + Q Q I GL A QH Sbjct: 69 NPVLRSKSGPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTITLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|306833720|ref|ZP_07466847.1| peptide deformylase [Streptococcus bovis ATCC 700338] gi|304424490|gb|EFM27629.1| peptide deformylase [Streptococcus bovis ATCC 700338] Length = 136 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + L V + +G+AA IGV R ++ Sbjct: 1 MIKQIVR--DTFFLAQKSEEATKEDLYLAQDLQDTL-VANRDNCVGMAANMIGVKKRAII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP ++ S F + +R I V ++D N Sbjct: 58 VNM-----GVADLVMFNPVLLNKSLPFDTKESCLSLTGARP--TRRYQKIEVAFLDKNWS 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL G++ Sbjct: 111 QQTLTLTGLPAQICQHELDHLEGVII 136 >gi|150018336|ref|YP_001310590.1| peptide deformylase [Clostridium beijerinckii NCIMB 8052] gi|6014951|sp|O08450|DEF_CLOB8 RecName: Full=Peptide deformylase; Short=PDF; AltName: Full=Polypeptide deformylase gi|2208948|emb|CAB09662.1| formylmethionine deformylase [Clostridium beijerinckii] gi|149904801|gb|ABR35634.1| formylmethionine deformylase [Clostridium beijerinckii NCIMB 8052] Length = 136 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYR 57 + KP+V IL + S K + M +ID++++ + + +GLAA IGV R Sbjct: 1 MIKPIVK---DILFLGQKSEEATKND---MVVIDDLIDTLRANLEHCVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + INP I+ + + I + KR I V Y+D Sbjct: 55 ILVFT-----VGNLIVPMINPVILKKEKPYETEESCLSLIGFRK--TKRYETIEVTYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + +G A +QHE+DH GI+ Sbjct: 108 NFNKKKQVFNGFTAQIIQHEMDHFEGIII 136 >gi|163784804|ref|ZP_02179594.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] gi|159879931|gb|EDP73645.1| Formylmethionine deformylase [Hydrogenivirga sp. 128-5-R1-1] Length = 108 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTD-GIGLAAVQIGVLYRLV 59 M K ++ +PD L+ VS+ + + ++ + MY++ G+G+AA Q+ R + Sbjct: 1 MKKLKILTYPDERLKVVSKEVIDFGKEFKEFVEKLKYTMYNSPGGVGIAAPQVNKHIRTI 60 Query: 60 VIDLQDHAHRKNP 72 ++D + H+KN Sbjct: 61 IVDASHYKHKKNK 73 >gi|19745939|ref|NP_607075.1| peptide deformylase [Streptococcus pyogenes MGAS8232] gi|19748096|gb|AAL97574.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS8232] Length = 136 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +L++ ++ +K + I + + L V Y + +G+AA IG R+V++ Sbjct: 1 MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTL-VFYRQECLGMAANMIGEQKRIVIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + + +R ITV Y+D N + Sbjct: 59 SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136 >gi|15674896|ref|NP_269070.1| peptide deformylase [Streptococcus pyogenes M1 GAS] gi|21910126|ref|NP_664394.1| peptide deformylase [Streptococcus pyogenes MGAS315] gi|28896175|ref|NP_802525.1| peptide deformylase [Streptococcus pyogenes SSI-1] gi|50914040|ref|YP_060012.1| peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71903322|ref|YP_280125.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71910490|ref|YP_282040.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94990244|ref|YP_598344.1| peptide deformylase [Streptococcus pyogenes MGAS10270] gi|139473964|ref|YP_001128680.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|306827532|ref|ZP_07460815.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] gi|13622035|gb|AAK33791.1| putative polypeptide deformylase [Streptococcus pyogenes M1 GAS] gi|21904318|gb|AAM79197.1| putative polypeptide deformylase [Streptococcus pyogenes MGAS315] gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase [Streptococcus pyogenes SSI-1] gi|50903114|gb|AAT86829.1| Peptide deformylase [Streptococcus pyogenes MGAS10394] gi|71802417|gb|AAX71770.1| peptide deformylase [Streptococcus pyogenes MGAS6180] gi|71853272|gb|AAZ51295.1| peptide deformylase [Streptococcus pyogenes MGAS5005] gi|94543752|gb|ABF33800.1| Peptide deformylase [Streptococcus pyogenes MGAS10270] gi|134272211|emb|CAM30457.1| peptide deformylase [Streptococcus pyogenes str. Manfredo] gi|304430330|gb|EFM33356.1| peptide deformylase [Streptococcus pyogenes ATCC 10782] Length = 136 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +L++ ++ +K + I + + L Y + +G+AA IG R+V++ Sbjct: 1 MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + + +R ITV Y+D N + Sbjct: 59 SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLSLTGLTAQICQHELDHLEGILI 136 >gi|46190479|ref|ZP_00206479.1| COG0242: N-formylmethionyl-tRNA deformylase [Bifidobacterium longum DJO10A] Length = 128 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 15 RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 R S E +I+++++ + +G+AA IGV R+ I D Sbjct: 2 RTPS---EAAGPGDEQVIEDLVDTLEANRSRCVGMAANMIGVGKRI--IVFVDEDLGGRI 56 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 V +NP I F + + R R + A+H G A Sbjct: 57 TVMLNPVITASDGAFDTQEGCLSLTGERRTLRYRRIEVNYENRRFRARHATFA--GWTAQ 114 Query: 133 CLQHELDHLNGILF 146 +QHE+DH NGI+ Sbjct: 115 IIQHEVDHCNGIII 128 >gi|171778277|ref|ZP_02919483.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282977|gb|EDT48401.1| hypothetical protein STRINF_00325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 136 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S+ K + + + + L + IG+AA IGV R+++ Sbjct: 1 MIKEIVK--DTFFLAQKSQEATKEDLYLAQDLQDTLNANR-DNCIGMAANIIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP + S F + + +R I V +MD N Sbjct: 58 VNM-----GLADLVMFNPVMTNKSLPFDTEESCLSLLGSRP--TRRYQKIDVTFMDKNWN 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 Q + GL A QHELDHL GI+ Sbjct: 111 KQSLTLTGLAAQICQHELDHLEGIII 136 >gi|255633238|gb|ACU16975.1| unknown [Glycine max] Length = 125 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 22/41 (53%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDG 44 +V +PDP LR ++ I + + L+ M +VMY DG Sbjct: 75 LKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKADG 115 >gi|94988363|ref|YP_596464.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94992245|ref|YP_600344.1| peptide deformylase [Streptococcus pyogenes MGAS2096] gi|94541871|gb|ABF31920.1| peptide deformylase [Streptococcus pyogenes MGAS9429] gi|94545753|gb|ABF35800.1| Peptide deformylase [Streptococcus pyogenes MGAS2096] Length = 136 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 9/145 (6%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 + + ++ +L++ ++ +K + I + + L Y + +G+AA IG R+V++ Sbjct: 1 MIREIITD-HFLLQQKAQVAKKEDLWIGQDLQDTLA-FYRQECLGMAANMIGEQKRIVIV 58 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121 + +V NP +++ + + + +R ITV Y+D N + Sbjct: 59 SM-----GFIDLVMFNPVMVSKKGIYQTKESCLSLSGYRK--TQRYDKITVEYLDHNWRP 111 Query: 122 QIIYADGLLATCLQHELDHLNGILF 146 + + GL A QHELDHL GIL Sbjct: 112 KRLNLTGLTAQICQHELDHLEGILI 136 >gi|116627328|ref|YP_819947.1| peptide deformylase [Streptococcus thermophilus LMD-9] gi|116100605|gb|ABJ65751.1| N-formylmethionyl-tRNA deformylase [Streptococcus thermophilus LMD-9] gi|312277834|gb|ADQ62491.1| Peptide deformylase [Streptococcus thermophilus ND03] Length = 136 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + LE +G+AA IGV R+++ Sbjct: 1 MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLEFHKDA-CVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ V ++ S E + +R I V Y+D Sbjct: 58 VNIGFVNLVMFNPVLVS-------KSSSFQTEESCLSLEGSRPTRRYESIEVAYLDERWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+ + +QHELDHL G++ Sbjct: 111 PKQLSFSGMPSQIIQHELDHLEGVII 136 >gi|34101051|gb|AAQ57593.1| putative peptide deformylase [Trypanosoma brucei] Length = 366 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 E C S ++R + + VR + + + D + A HELDHLNGILF Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233 Query: 148 DHLSR 152 + Sbjct: 234 RRIPD 238 >gi|160895157|ref|ZP_02075930.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] gi|156863191|gb|EDO56622.1| hypothetical protein CLOL250_02717 [Clostridium sp. L2-50] Length = 144 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 13/147 (8%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 + KP+V IL + S P +++ +++N + + L +G+ A IG ++ Sbjct: 9 MVKPIVK---DILFLGQKSVPATQLDMNVVNDLRDTLAANRER-CVGMEANMIGYKKNMI 64 Query: 60 VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 ++ M+ INP I + + + + + R I V + D Sbjct: 65 IVSAGP-----VDMIMINPVICSKIGRYETEEGCLS--LEGKRKTTRYKKIEVEFQDAGF 117 Query: 120 QHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A +QHE+DH NGI+ Sbjct: 118 VKRKMAFEGFVAQIIQHEVDHCNGIVI 144 >gi|291519179|emb|CBK74400.1| N-formylmethionyl-tRNA deformylase [Butyrivibrio fibrisolvens 16/4] Length = 136 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + K +V D I L++ S P + ++ +I ++++ + +G+AA IGV ++ Sbjct: 1 MVKQIVK--DQIFLQQKSEPATEADA---QVIVDLMDTLKANIDRCVGMAANMIGVKKQI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V+ P +F + E D R I V Y+D N Sbjct: 56 IVV-------AAGPFIFPMVNPVITKKSGKYETEESCLSLDGVRPCVRYDEIEVDYLDQN 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q + G A +QHE+ H +G L Sbjct: 109 FQPKHGKYSGFTAQIIQHEIQHFSGELI 136 >gi|322488070|emb|CBZ23315.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103] Length = 401 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 22/168 (13%) Query: 5 PLVIFPDPIL--RRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 P++ P L R+ + ++ + LI + E + ++A Q G ++ + Sbjct: 114 PIIQLPARSLWCRQYALDARRVAQGEYAGLISQVKEARHYYQYPSMSAPQTGWNVQMFTL 173 Query: 62 DLQDHAHRKNPMVFINPKIITFSDDFSVY-------------------QEGCLSIPDYRA 102 + + + S E C S Sbjct: 174 FDNSVFINPVNLDEVAWRAEAAQQGMSWVAFEEEKMRELRAEGLTGFAWEPCASSGFLLH 233 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 ++R + VR +D + + + D + A HELDHL G+LF + Sbjct: 234 YIERPLTVRVRALDEHGKAFTVTLDKMRARMSLHELDHLQGVLFTRRV 281 >gi|325696895|gb|EGD38782.1| peptide deformylase [Streptococcus sanguinis SK160] Length = 136 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 27 DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + L ++ + + +GLAA IGV R+++ P+V NP + + S Sbjct: 22 EDLYLAQDLQNTLQANRENCLGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLRSKS 76 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + +R ITV Y+D N Q Q + GL A QHELDHL GI Sbjct: 77 GPYQTEEGCLSLTGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGI 134 Query: 145 LF 146 L Sbjct: 135 LI 136 >gi|71745056|ref|XP_827158.1| metalloprotease-like protein [Trypanosoma brucei TREU927] gi|70831323|gb|EAN76828.1| metalloprotease-like protein [Trypanosoma brucei] Length = 366 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 E C S ++R + + VR + + + D + A HELDHLNGILF Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233 Query: 148 DHLSR 152 + Sbjct: 234 RRIPD 238 >gi|325688025|gb|EGD30044.1| peptide deformylase [Streptococcus sanguinis SK72] gi|327469220|gb|EGF14692.1| peptide deformylase [Streptococcus sanguinis SK330] Length = 136 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 19 RPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFI 76 +P E+ + + + L ++ + + + IGLAA IGV R+++ P+V Sbjct: 14 QPSEQASREDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMF 68 Query: 77 NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 NP + + S + + + +R IT+ Y+D + Q Q + GL A QH Sbjct: 69 NPVLRSKSGPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTMTLKGLPAQICQH 126 Query: 137 ELDHLNGILF 146 ELDHL GI+ Sbjct: 127 ELDHLEGIII 136 >gi|164687438|ref|ZP_02211466.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] gi|164603212|gb|EDQ96677.1| hypothetical protein CLOBAR_01079 [Clostridium bartlettii DSM 16795] Length = 137 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYS--TDGIGLAAVQIGVLYRL 58 + + +V D L + S P + +++ ++++ + + +GLAA IG R+ Sbjct: 1 MIRQIVK--DVLFLEQKSEPATIQD---KSIVTDLVDTLKANLDGCVGLAANMIGFKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +V + + + E + R I V+++D N Sbjct: 56 LVFTVGAGMIVPM------INPVILKKEKPYLTEESCLSLEGFRQTTRYETIEVKFLDAN 109 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + G +A +QHE+DH GI+ Sbjct: 110 FKEKTQVFTGFVAQIIQHEMDHFEGIII 137 >gi|302803460|ref|XP_002983483.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] gi|300148726|gb|EFJ15384.1| hypothetical protein SELMODRAFT_422807 [Selaginella moellendorffii] Length = 157 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 3 KKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 K +V DP+L +R + E + + N I +++ M +GLAA QIGV +++ Sbjct: 47 KLEIVQAGDPVLHEAAREVLHSEVSSDTVQNTIQGLIDAMREAPAVGLAAPQIGVPLQII 106 Query: 60 VIDLQDHAHRK 70 V++ Sbjct: 107 VLEDTAEYISY 117 >gi|261331378|emb|CBH14372.1| metalloprotease-like protein [Trypanosoma brucei gambiense DAL972] Length = 366 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 E C S ++R + + VR + + + D + A HELDHLNGILF Sbjct: 174 CFAWEPCASCCFLLHFIERPSTVRVRAIAEDGNPFEVTLDKMRARMALHELDHLNGILFT 233 Query: 148 DHLSR 152 + Sbjct: 234 RRIPD 238 >gi|331083358|ref|ZP_08332471.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] gi|330404439|gb|EGG83984.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA] Length = 136 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 10/134 (7%) Query: 14 LRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNP 72 L + S K + I +L+D + +G+AA IGV R++++++ Sbjct: 12 LGQKSELATKADLQIGRDLMDTL--AANREGCVGMAANMIGVKKRVIIVNM-----GFVD 64 Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +V NP ++ + + R I V Y+D N + Q + DG +A Sbjct: 65 VVMFNPVLVKKELPYETEEGCLS--LPGVRKTTRYQTIEVEYLDMNWKKQNLKLDGWIAQ 122 Query: 133 CLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 123 ICQHELDHLEGILI 136 >gi|295099860|emb|CBK88949.1| N-formylmethionyl-tRNA deformylase [Eubacterium cylindroides T2-87] Length = 136 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + + +V D IL R+S K + I + + LE + G+AA IG R++ Sbjct: 1 MVRDIVK--DTFILSRISVLANKDDLSIAQDLIDTLEAHKVS-CAGMAANMIGFHKRIIA 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +NP+II S +S + KR I VRY+D + Sbjct: 58 FQDEGKIVV-----MLNPEIIKKSQIYSAKEGCLSLSGQRE--TKRYRSIKVRYLDMQMK 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 +I A +QHE+DH +GIL Sbjct: 111 IKIKTFKDFTAQVIQHEIDHCDGILI 136 >gi|315037295|ref|YP_004030863.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325955774|ref|YP_004286384.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|312275428|gb|ADQ58068.1| peptide deformylase [Lactobacillus amylovorus GRL 1112] gi|325332339|gb|ADZ06247.1| peptide deformylase [Lactobacillus acidophilus 30SC] gi|327182600|gb|AEA31047.1| peptide deformylase [Lactobacillus amylovorus GRL 1118] Length = 137 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 M + ++ D L + S N + + +++ + +GLAA IG R Sbjct: 1 MTAQNIIH--DQLFLSQKS---TSANRADLKVAEDLRDTLLANRDKAVGLAANMIGKNKR 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ P+V +NP+I S ++ + + + KR ITV Y D Sbjct: 56 IIAFY-----VGLLPLVMLNPQITKKSGEYLTEEGCLSLSGERK--TKRYRTITVTYQDM 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + +A +QHE+DH GIL Sbjct: 109 NLNTKTQEFTDFIAEVIQHEVDHCEGILI 137 >gi|293402350|ref|ZP_06646487.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304197|gb|EFE45449.1| peptide deformylase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 9/135 (6%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ S P + + + N+LE + + + +AA IGV R++ D Sbjct: 12 LQKTSEPATEKDLWV---AKNLLETLQAHEDRCVGMAANMIGVFKRIIAFVDIDTGS--- 65 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 + I + + + +R I VRY D + +I A Sbjct: 66 -HWVMLNPEIIKTSKETYLAQEQCLSISGIRQTRRYRRIKVRYQDEHMNIKIKTFHDKTA 124 Query: 132 TCLQHELDHLNGILF 146 +QHE+DH NGIL Sbjct: 125 QIIQHEIDHCNGILI 139 >gi|225859308|ref|YP_002740818.1| peptide deformylase [Streptococcus pneumoniae 70585] gi|303255336|ref|ZP_07341406.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|303260177|ref|ZP_07346149.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|303262567|ref|ZP_07348508.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|303264969|ref|ZP_07350884.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|303266432|ref|ZP_07352320.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|303269392|ref|ZP_07355162.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|225720965|gb|ACO16819.1| polypeptide deformylase [Streptococcus pneumoniae 70585] gi|301794560|emb|CBW37004.1| peptide deformylase [Streptococcus pneumoniae INV104] gi|301802269|emb|CBW35021.1| peptide deformylase [Streptococcus pneumoniae INV200] gi|302597704|gb|EFL64780.1| peptide deformylase [Streptococcus pneumoniae BS455] gi|302636284|gb|EFL66778.1| peptide deformylase [Streptococcus pneumoniae SP14-BS292] gi|302638674|gb|EFL69137.1| peptide deformylase [Streptococcus pneumoniae SP-BS293] gi|302641060|gb|EFL71437.1| peptide deformylase [Streptococcus pneumoniae BS458] gi|302644010|gb|EFL74269.1| peptide deformylase [Streptococcus pneumoniae BS457] gi|302645488|gb|EFL75720.1| peptide deformylase [Streptococcus pneumoniae BS397] gi|332073889|gb|EGI84367.1| polypeptide deformylase family protein [Streptococcus pneumoniae GA41301] Length = 136 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS P + + + L ++ + +GLAA IG+ R Sbjct: 1 MEKKIVK---DILFLSQVSHPASQED---LYLARDLQDTLLANRDTCVGLAANMIGMQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++F + + + KR I + Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSFEGSYEAEEGCLSLVGVRS--TKRYETIRLAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q I G A QHELDHL G + Sbjct: 108 KWQEQTITLTGFPAQICQHELDHLEGRII 136 >gi|125717323|ref|YP_001034456.1| peptide deformylase [Streptococcus sanguinis SK36] gi|125497240|gb|ABN43906.1| Formylmethionine deformylase, putative [Streptococcus sanguinis SK36] Length = 136 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 27 DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + L ++ + + + IGLAA IGV R+++ P+V NP +++ S Sbjct: 22 EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + + +R ITV Y+D N Q Q + GL A QHELDHL GI Sbjct: 77 GPYQTEEGCLSLVGSRP--TQRYQEITVDYLDKNWQQQTMTLKGLPAQICQHELDHLEGI 134 Query: 145 LF 146 + Sbjct: 135 II 136 >gi|300854809|ref|YP_003779793.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] gi|300434924|gb|ADK14691.1| peptide deformylase [Clostridium ljungdahlii DSM 13528] Length = 136 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L + S K + M + D++++ + + + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEEATKKD---MAVADDLMDTLRANLQNCVGLAGNMIGVRKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + INP I+ + + I + KR I V Y+D Sbjct: 55 ILVFT-----VGNLIVPMINPVILKKEKPYETEESCLSLIGVRK--TKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N ++Q G A +QHE+DH GI+ Sbjct: 108 NFKNQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|256843756|ref|ZP_05549243.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295691921|ref|YP_003600531.1| peptide deformylase [Lactobacillus crispatus ST1] gi|256613661|gb|EEU18863.1| polypeptide deformylase [Lactobacillus crispatus 125-2-CHN] gi|295030027|emb|CBL49506.1| Peptide deformylase [Lactobacillus crispatus ST1] Length = 137 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 1 MVKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLYR 57 M + ++ D LR+ S + + + + N+ + + + G GLAA IG + Sbjct: 1 MTAQKIIH--DQLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTKQ 55 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++ P V +NP+II + + + +V+R ITV Y + Sbjct: 56 IIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQNM 108 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH NGIL Sbjct: 109 ELETVTQTFGDFIAETIQHEIDHCNGILI 137 >gi|255525142|ref|ZP_05392086.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296188109|ref|ZP_06856501.1| peptide deformylase [Clostridium carboxidivorans P7] gi|255511196|gb|EET87492.1| formylmethionine deformylase [Clostridium carboxidivorans P7] gi|296047235|gb|EFG86677.1| peptide deformylase [Clostridium carboxidivorans P7] Length = 136 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMYST--DGIGLAAVQIGVLYR 57 + KP+V +L + S K + M ++D++++ + + + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGQKSEKATKDD---MAVVDDLMDTLKANLQNCVGLAGNMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V + INP I+ + + I + KR I V Y+D Sbjct: 55 ILVFT-----VANLIVPMINPVILKKEKPYETEESCLSLIGVRK--TKRYEMIEVEYLDR 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + Q G A +QHE+DH GI+ Sbjct: 108 NFKSQKQVFTGFTAQIIQHEMDHFEGIII 136 >gi|55820518|ref|YP_138960.1| peptide deformylase [Streptococcus thermophilus LMG 18311] gi|55822406|ref|YP_140847.1| peptide deformylase [Streptococcus thermophilus CNRZ1066] gi|55736503|gb|AAV60145.1| polypeptide deformylase [Streptococcus thermophilus LMG 18311] gi|55738391|gb|AAV62032.1| polypeptide deformylase [Streptococcus thermophilus CNRZ1066] Length = 136 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 11/146 (7%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K +V D L + S K + + + + LE + +G+AA IGV R+++ Sbjct: 1 MIKTIVK--DVFFLGQKSTEATKEDLYLAKDLRDTLE-FHKDTCVGMAANMIGVKKRVII 57 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +++ +V NP +++ S F + + +R I V Y+D Sbjct: 58 VNI-----GFVNLVMFNPVLVSKSSSFQTEESCLS--LEGSRPTRRYESIEVAYLDERWM 110 Query: 121 HQIIYADGLLATCLQHELDHLNGILF 146 + + G+ + +QHELDHL G++ Sbjct: 111 PKQLSFSGMPSQIIQHELDHLEGVII 136 >gi|322377869|ref|ZP_08052358.1| peptide deformylase [Streptococcus sp. M334] gi|321281292|gb|EFX58303.1| peptide deformylase [Streptococcus sp. M334] Length = 136 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+ + + + L ++ + +GLAA IGV Sbjct: 1 MEKKIVK---DILFLSQVSQSASQED---LYLARDLQDTLLANRETCVGLAANMIGVQKC 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP ++++ + + KR I V Y D Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSYEGLYETEEGCLSLTGVRP--TKRYETIRVAYRDS 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + G A QHELDHL G + Sbjct: 108 KWQEQTMILTGFPAQICQHELDHLEGRII 136 >gi|157150232|ref|YP_001451024.1| peptide deformylase [Streptococcus gordonii str. Challis substr. CH1] gi|157075026|gb|ABV09709.1| formylmethionine deformylase [Streptococcus gordonii str. Challis substr. CH1] Length = 136 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 12/135 (8%) Query: 14 LRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN 71 L++ S K + + L ++ + + +GLAA IG R+++ Sbjct: 12 LQQKSEVAVKSD---LYLAQDLQDTLLANQENCVGLAANMIGDKKRVIIFMY-----GMV 63 Query: 72 PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLA 131 P++ NP + S + + + R ITV Y+D N Q Q I A Sbjct: 64 PIIMFNPILRAKSGPYQTEEGCLSLVGSRS--TTRYQEITVDYLDRNWQPQTITLKDFPA 121 Query: 132 TCLQHELDHLNGILF 146 QHELDHL GIL Sbjct: 122 QICQHELDHLEGILI 136 >gi|187934485|ref|YP_001886878.1| peptide deformylase [Clostridium botulinum B str. Eklund 17B] gi|187722638|gb|ACD23859.1| polypeptide deformylase family protein [Clostridium botulinum B str. Eklund 17B] Length = 136 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57 + KP+V +L S K + + ID++++ + +GLA IGV R Sbjct: 1 MIKPIVK---DVLFLGEKSEEATKKDKAV---IDDLIDTLKANIEHCVGLAGNMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V ++ + + S E KR I V+Y+D Sbjct: 55 ILVF-------VAGKVIIPMVNPVILKKEKSYETEESCLSLTGFRKTKRYEIIEVQYLDK 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G +A +QHE+DH GI+ Sbjct: 108 NFKKKKKVFTGFVAQIIQHEMDHFEGIII 136 >gi|315221248|ref|ZP_07863171.1| peptide deformylase [Streptococcus anginosus F0211] gi|315189607|gb|EFU23299.1| peptide deformylase [Streptococcus anginosus F0211] Length = 140 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPD-PILRRVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRL 58 + KP+V D L++ ++P K + I ++ + + +G+AA IGV ++ Sbjct: 5 MIKPIVK--DMLFLQQKAQPACKEDVGIGQ---DLFDTLKANQDKCVGMAANMIGVQKQV 59 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 ++ P++ NP + + + R ITV Y+D + Sbjct: 60 IIFMY-----GMVPVIMFNPILKRKLSPYRAEESCLSLAGSRL--TTRYKEITVDYLDQH 112 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 Q Q + A QHELDHL GIL Sbjct: 113 WQKQTLTLKDFPAQICQHELDHLEGILI 140 >gi|209732808|gb|ACI67273.1| Peptide deformylase, mitochondrial precursor [Salmo salar] Length = 112 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 37/80 (46%) Query: 73 MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT 132 +FIN ++ +QE C SI + A V + V ++ A+ G Sbjct: 21 QIFINHQLRVLDGRTVKFQEACESISGFSATVPHYLSVEVSGLNEKAEPVTWQVSGWPVR 80 Query: 133 CLQHELDHLNGILFIDHLSR 152 LQHE+DHL+G+ +ID + Sbjct: 81 NLQHEMDHLDGVWYIDRMDS 100 >gi|256849685|ref|ZP_05555117.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|262047729|ref|ZP_06020681.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|293380519|ref|ZP_06626582.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|312977032|ref|ZP_07788781.1| peptide deformylase [Lactobacillus crispatus CTV-05] gi|256713801|gb|EEU28790.1| polypeptide deformylase [Lactobacillus crispatus MV-1A-US] gi|260571934|gb|EEX28502.1| polypeptide deformylase [Lactobacillus crispatus MV-3A-US] gi|290922919|gb|EFD99858.1| peptide deformylase [Lactobacillus crispatus 214-1] gi|310896360|gb|EFQ45425.1| peptide deformylase [Lactobacillus crispatus CTV-05] Length = 137 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%) Query: 1 MVKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLY 56 M + ++ L R+ S + + + + N+ + + + G GLAA IG Sbjct: 1 MTAQKII---HNRLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTK 54 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ P V +NP+II + + + +V+R ITV Y + Sbjct: 55 QIIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQN 107 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH NGIL Sbjct: 108 MELETVTQTFGDFIAETIQHEIDHCNGILI 137 >gi|327461858|gb|EGF08189.1| peptide deformylase [Streptococcus sanguinis SK1] Length = 136 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Query: 27 DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + L ++ + + + IGLAA IGV R+++ P+V NP + + S Sbjct: 22 EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLRSKS 76 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + + +R IT+ Y+D + Q Q + GL A QHELDHL GI Sbjct: 77 GPYQTEESCLSLVGSRP--TQRYQEITIDYLDKHWQQQTMTLKGLPAQICQHELDHLEGI 134 Query: 145 LF 146 + Sbjct: 135 II 136 >gi|325693656|gb|EGD35575.1| peptide deformylase [Streptococcus sanguinis SK150] gi|327458954|gb|EGF05302.1| peptide deformylase [Streptococcus sanguinis SK1057] Length = 136 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 27 DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + L ++ + + + IGLAA IGV R+++ P+V NP +++ S Sbjct: 22 EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + + +R ITV Y+D + Q Q + GL A QHELDHL GI Sbjct: 77 GPYKTEEGCLSLVGSRP--TQRYQEITVDYLDKHWQQQTMTLKGLPAQICQHELDHLEGI 134 Query: 145 LF 146 + Sbjct: 135 II 136 >gi|302765893|ref|XP_002966367.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] gi|300165787|gb|EFJ32394.1| hypothetical protein SELMODRAFT_407845 [Selaginella moellendorffii] Length = 340 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 40/138 (28%) Query: 21 IEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKI 80 I + ++ L ML+V Y DGIGL Q+GV RL+V + + Sbjct: 62 INSFDDNVKKL---MLDVTYRRDGIGLLTPQLGVNARLMVFNPEGERG------------ 106 Query: 81 ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDH 140 + R + A +HE DH Sbjct: 107 -------------------------KGKRDRYRSELKSQDINGKKYGSWTARIFRHEYDH 141 Query: 141 LNGILFIDHLSRLKRDMI 158 L G+L+ID ++ + I Sbjct: 142 LEGVLYIDQMTPRSLNSI 159 >gi|295106021|emb|CBL03564.1| N-formylmethionyl-tRNA deformylase [Gordonibacter pamelaeae 7-10-1-b] Length = 136 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Query: 40 YSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPD 99 ++ + +G+AA IG R++V D P V NP+I+ S + + Sbjct: 37 HAHECVGMAANMIGTAKRIIVFD-----DEGTPRVMFNPEIVGRSGTYEAEEGCLS--LP 89 Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 R I VR+ D Q + G A +QHE+DH +GIL Sbjct: 90 GSRRTTRYRTIKVRFEDRGFQPREQTFTGFTAQIIQHEIDHCDGILI 136 >gi|224010171|ref|XP_002294043.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970060|gb|EED88398.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 549 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 19/33 (57%) Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150 + I G LA C QHE+DH G+L +DH+ Sbjct: 347 CGVTKQITLKGELARCAQHEMDHDRGVLIVDHV 379 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 4 KPLVIFPDPILRRVSRPIE----KINSDIMNL---IDNMLEVMYSTDGIGLAAVQIGVLY 56 P+ +PDPILR S P+ + + L + +GLAA Q GV Sbjct: 154 LPMGRWPDPILRHSSSPVSSCVFNNDHQLKQLQLVARALRNTARKEGAVGLAAQQCGVDG 213 Query: 57 RLVVIDLQDHAHRKNPMVF 75 LV ID HR Sbjct: 214 SLVFIDGIKKTHRSINQQL 232 >gi|169840242|ref|ZP_02873430.1| Peptide deformylase [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 3 KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V++ P LR R ++++ ++ +D M+ +M +G+GLAA Q+ + R V++ Sbjct: 1 MLQIVLYGHPTLREK-RKSDEVDDNVRETLDEMVALMRKANGVGLAANQVDIAKRFFVLE 59 Query: 63 L 63 Sbjct: 60 H 60 >gi|325690383|gb|EGD32387.1| peptide deformylase [Streptococcus sanguinis SK115] Length = 136 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 27 DIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 + + L ++ + + + IGLAA IGV R+++ P+V NP +++ S Sbjct: 22 EDLYLAQDLQDTLQANRENCIGLAANMIGVRKRVIIFLY-----GLVPVVMFNPVLLSKS 76 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 + + + +R ITV Y+D + Q Q + GL A QHELDHL G+ Sbjct: 77 GPYKTEEGCLSLVGSRP--TQRYQEITVDYLDKHWQQQTMTLKGLPAQICQHELDHLEGV 134 Query: 145 LF 146 + Sbjct: 135 II 136 >gi|116493404|ref|YP_805139.1| peptide deformylase [Pediococcus pentosaceus ATCC 25745] gi|116103554|gb|ABJ68697.1| N-formylmethionyl-tRNA deformylase [Pediococcus pentosaceus ATCC 25745] Length = 136 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 12/142 (8%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRLVVIDLQ 64 VI IL + S P K + + + ++++ + + +AA IGV R++V+ + Sbjct: 5 VIHDQQILSQTSIPATKQDLSV---VMDLMDTLKANSERCVGMAANMIGVHKRIIVVTM- 60 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 + INP I+ + ++ + + R I V+Y+D + Sbjct: 61 ----GMMNVPMINPVILKKGNPYTTEEGCLSLTGERS--TTRYDEIEVQYLDLEFKKHTQ 114 Query: 125 YADGLLATCLQHELDHLNGILF 146 +A +QHE+DH +GI+ Sbjct: 115 EFKEFIAQIIQHEVDHCDGIII 136 >gi|227878034|ref|ZP_03996024.1| peptide deformylase [Lactobacillus crispatus JV-V01] gi|227862352|gb|EEJ69881.1| peptide deformylase [Lactobacillus crispatus JV-V01] Length = 143 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 17/150 (11%) Query: 1 MVKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEVMYSTDGI--GLAAVQIGVLY 56 M + ++ L R+ S + + + + N+ + + + G GLAA IG Sbjct: 7 MTAQKII---HNRLFLRQKS---DLAGKNDLQVAINLRDTLLANRGKAAGLAANMIGQTK 60 Query: 57 RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 +++ P V +NP+II + + + +V+R ITV Y + Sbjct: 61 QIIAFYAGP-----LPFVMLNPRIIQKKQMYLASEGCLS--LEGERNVQRYEEITVTYQN 113 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILF 146 + +A +QHE+DH NGIL Sbjct: 114 MELETVTQTFGDFIAETIQHEIDHCNGILI 143 >gi|251781139|ref|ZP_04824059.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085454|gb|EES51344.1| polypeptide deformylase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 136 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 17/149 (11%) Query: 2 VKKPLVIFPDPILR--RVSRPIEKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYR 57 + K +V +L S K + +ID++++ + +GLAA IGV R Sbjct: 1 MVKEIVK---DVLFLGEKSEEATKKD---KVVIDDLIDTLKANIEHCVGLAANMIGVKKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 ++V ++ + + E KR I V+Y+D Sbjct: 55 ILVF-------VAGKVIIPMVNPVILKKEKIYETEESCLSLTGFRKTKRYEIIEVQYLDK 107 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 N + + G +A +QHE+DH GI+ Sbjct: 108 NFKKKKQVFTGFVAQIIQHEMDHFEGIII 136 >gi|110004337|emb|CAK98675.1| putative peptide deformylase 2 protein [Spiroplasma citri] Length = 192 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 24/172 (13%) Query: 12 PILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGLAAVQIGVLYRL 58 P +R+ S + + + ++ +++ + + +GLAA QIG ++ Sbjct: 17 PSIRQSSIDVSLPLAPENELVMKKLIDFVRYSQDPQKNSGHTIRPAVGLAAPQIGFNIKM 76 Query: 59 VVIDLQDHAHRKNPMVFINPKII--------TFSDDFSVYQEGCLSIPDYRADVKRSAFI 110 I +++ I +I + D V RS I Sbjct: 77 YYIRIEETNDETGFKKIIEHAMINPKIIGKSAQIACIEEGEGCLSVNGDKEGFVPRSFRI 136 Query: 111 TVRYMDCNAQHQ-IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161 V D Q Q I A A QHE HL G L+ D ++ K++ KK Sbjct: 137 IVEGYDYLKQQQVTITARSYEAIVFQHEEAHLEGKLYYDLIN--KKEPWLKK 186 >gi|239792061|dbj|BAH72415.1| ACYPI003516 [Acyrthosiphon pisum] Length = 119 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Query: 6 LVIFPDPILRRVSRPI--EKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62 +V DP+LR + P+ EKI ++ NLI M +M ++ IGLAA Q+G+ +++ VI Sbjct: 27 VVQIGDPVLRNKASPVPLEKIGTKEVQNLIYIMKSLMKKSNLIGLAAPQVGIPFQIFVIH 86 Query: 63 LQDHAHRKNPMVFINPKIITFSDDFSVYQE 92 +H + + + + + E Sbjct: 87 FPRPSHYFSKEEILLKGMEHVENHVWINPE 116 >gi|163816477|ref|ZP_02207841.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] gi|158448177|gb|EDP25172.1| hypothetical protein COPEUT_02666 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + K +V D L + S P+ +++ I I +M + +G+A IG R+ Sbjct: 1 MVKQIVR--DQMFLSQKSSPMTPMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ + +V +NP +++ S + + D V R I V + D + Sbjct: 56 IIVSM-----GFANVVMLNPVLLSKSGAYETEEGCLS--LDGTRKVTRYRDIEVEFQDAS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A + HE+DHL G + Sbjct: 109 FAKKRMKFNGYIAQIVLHEMDHLEGRII 136 >gi|302335150|ref|YP_003800357.1| formylmethionine deformylase [Olsenella uli DSM 7084] gi|301318990|gb|ADK67477.1| formylmethionine deformylase [Olsenella uli DSM 7084] Length = 139 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 8/145 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIM-NLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + K L + +L + ++ + +LID M D LAA QIGV +++ Sbjct: 1 MIKELCKD-EAVLSQRCERATAEDAVVAWDLIDTM---DSLEDVGCLAANQIGVAKQVIA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 D I + + A VK S V + Sbjct: 57 YRDDDQVVHVMYNPRIMMGLGASKLEEGCLTREGTVRVTRYAKVKVSFDELVEGSL---K 113 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + G +A +QH DH NG L Sbjct: 114 ARRRDYTGWVAEMIQHMCDHCNGKL 138 >gi|281202742|gb|EFA76944.1| hypothetical protein PPL_09696 [Polysphondylium pallidum PN500] Length = 614 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 ++ + + D+ + D + + + I ADG+++ CLQHE DHL G Sbjct: 26 QKWTKEEIAETGRIEKVLDMMVREMRSNNGCDISGKDRSIEADGIISACLQHENDHLLGR 85 Query: 145 LFIDHLS 151 +FI+ L Sbjct: 86 VFIERLK 92 >gi|157828546|ref|YP_001494788.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801027|gb|ABV76280.1| polypeptide deformylase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 94 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 39/73 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 10 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 69 Query: 66 HAHRKNPMVFINP 78 + + Sbjct: 70 NNKSSPIVFINPD 82 >gi|139438035|ref|ZP_01771588.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC 25986] gi|133776232|gb|EBA40052.1| Hypothetical protein COLAER_00575 [Collinsella aerofaciens ATCC 25986] Length = 143 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 12/147 (8%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLVV 60 + K + + IL + + + ++++ + S D LAA QIGV ++ V Sbjct: 5 MIKE-LCHDEAILSQRCEVATVEDESVAQ---DLIDTIKSLDDAGCLAANQIGVTKKVCV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + F S +E CL+ + + + + Sbjct: 61 YL-----DDAGEPHVLYNPRLVFGLGASKMEESCLTHEEVTKSTRYIKCKVAFDQIVDGK 115 Query: 121 HQIIYAD--GLLATCLQHELDHLNGIL 145 + D G A +QH +DH G L Sbjct: 116 MKECRRDYAGFEAQMIQHMIDHCLGKL 142 >gi|313239302|emb|CBY14250.1| unnamed protein product [Oikopleura dioica] Length = 1132 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 26/169 (15%) Query: 8 IFPDPILRRVSRPI-------------EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGV 54 + DP+LR+ + E N IM + M M++ G + A Q+G+ Sbjct: 13 LIGDPVLRQPAADFDVNVYNSVDMKTFENHNPAIMKSLAKME--MFAQYGWVITAPQVGL 70 Query: 55 LYRLVVIDLQ----------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADV 104 +++++ L + VF NP+I +++ + E LSIP + Sbjct: 71 PIKIMLVQLHLGLDDDGFTIKGTDKTKNYVFANPEIRPLTNEKAFSIESSLSIPALSGVL 130 Query: 105 KRSAFITVRYMDCNAQHQI-IYADGLLATCLQHELDHLNGILFIDHLSR 152 +R I + D A+ + + + +Q+ +D LNG++FID ++ Sbjct: 131 ERHQLIELTAYDLAARRVVKMTLSPPDSFMVQNAVDQLNGVMFIDKVTD 179 >gi|165933262|ref|YP_001650051.1| peptide deformylase [Rickettsia rickettsii str. Iowa] gi|165908349|gb|ABY72645.1| peptide deformylase [Rickettsia rickettsii str. Iowa] Length = 119 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 39/73 (53%) Query: 6 LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65 +V P+ I ++ + I+ ++ +I ++D ML+ ++ +GL A +G+L R+ V+DL + Sbjct: 35 IVYAPNDIFKKQAEYIDIVDDNIRTIVDTMLQNLHIERAVGLGANMVGILKRIAVVDLHE 94 Query: 66 HAHRKNPMVFINP 78 + + Sbjct: 95 NNKSSPIVFINPD 107 >gi|295094704|emb|CBK83795.1| N-formylmethionyl-tRNA deformylase [Coprococcus sp. ART55/1] Length = 136 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 15/148 (10%) Query: 2 VKKPLVIFPDP-ILRRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYRL 58 + K +V D L + S P+ +++ I I +M + +G+A IG R+ Sbjct: 1 MVKQIVR--DQMFLSQKSSPMTTMDAGI---IADMQDTLAANQARCVGMAGNMIGYKKRI 55 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 +++ + +V +NP +++ S + + D V R I V + D + Sbjct: 56 IIVSM-----GFANVVMLNPVLLSKSGAYETEEGCLS--LDGTRKVTRYRDIEVEFQDAS 108 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + + +G +A + HE+DHL G + Sbjct: 109 FAKKRMKFNGYIAQIVLHEMDHLEGRII 136 >gi|188588885|ref|YP_001921872.1| peptide deformylase [Clostridium botulinum E3 str. Alaska E43] gi|188499166|gb|ACD52302.1| polypeptide deformylase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 136 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 22 EKINSDIMNLIDNMLEVMY--STDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 E+ +ID++++ + +GLAA IGV R++V ++ Sbjct: 17 EEATKKDKVVIDDLIDTLKANIEHCVGLAANMIGVKKRILVF-------VAGKVIIPMVN 69 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 + + E KR I V+Y+D N + + G +A +QHE+D Sbjct: 70 PVILKKEKIYETEESCLSLTGFRKTKRYEIIEVQYLDKNFKKKKQVFTGFVAQIIQHEMD 129 Query: 140 HLNGILF 146 H GI+ Sbjct: 130 HFEGIII 136 >gi|330881834|gb|EGH15983.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4] Length = 32 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 18/32 (56%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLI 32 M ++ FPD LR +++P+ ++ I L+ Sbjct: 1 MAILNILEFPDSRLRTIAKPVAMVDEGIRQLV 32 >gi|260881156|ref|ZP_05403747.2| peptide deformylase [Mitsuokella multacida DSM 20544] gi|260849662|gb|EEX69669.1| peptide deformylase [Mitsuokella multacida DSM 20544] Length = 139 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 14/148 (9%) Query: 2 VKKPLVIFPDPI-LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIG--LAAVQIGVLYRL 58 + + +V D L + S P ++ + + + +++++ + + LAA IG + Sbjct: 3 MIRDIVR--DTFFLAQPSVPAQRKD---VPIAEDLIDTLKANADRCVGLAANMIGERKCI 57 Query: 59 VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118 + I + + + + D R +I V Y D Sbjct: 58 IAI------RVGHAYLAMLNPTVIRHSKEVYNVSEGCLSLDGERPTTRYKWIEVEYRDLK 111 Query: 119 AQHQIIYADGLLATCLQHELDHLNGILF 146 + Q A +QHE+DH GIL Sbjct: 112 FKKQKQVFRDFPAEIVQHEMDHCEGILI 139 >gi|207110973|ref|ZP_03245135.1| peptide deformylase [Helicobacter pylori HPKX_438_CA4C1] Length = 72 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 39/57 (68%) Query: 88 SVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 +Y+EGCLS+P + +V+R + + Y + A+ +++ A LLA +QHE+DHLNG+ Sbjct: 16 MMYREGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGV 72 >gi|169838808|ref|ZP_02871996.1| hypothetical protein cdivTM_17171 [candidate division TM7 single-cell isolate TM7a] Length = 143 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITK 160 L LQHE+DH NGI+FIDH+ + K+D K Sbjct: 36 LVRVLQHEIDHTNGIVFIDHI-KNKKDAFYK 65 >gi|145530309|ref|XP_001450932.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418565|emb|CAK83535.1| unnamed protein product [Paramecium tetraurelia] Length = 282 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 9/146 (6%) Query: 11 DPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD----- 65 D L + + ++S ++N+L M + + L+A Q+GV R I Q Sbjct: 34 DDCLFYSADLVMNLSSRKKKDMNNLLFTMQTLEIPYLSANQVGVEDRYFGIMFQKQNFKW 93 Query: 66 ---HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122 ++ +NP +++ S+ S+ E + P R+ ++R I + + + Sbjct: 94 SLIEEKNLEKLLCVNPLVVSVSETTSIDWETNICFPFIRSQIERYDRIRLHFQTLEDEQ- 152 Query: 123 IIYADGLLATCLQHELDHLNGILFID 148 +G A +Q +D LNG ID Sbjct: 153 EFEFEGFNARVVQQAIDSLNGYQIID 178 >gi|145509567|ref|XP_001440722.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407950|emb|CAK73325.1| unnamed protein product [Paramecium tetraurelia] Length = 237 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 6/172 (3%) Query: 1 MVKKPLVIFPDPI---LRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +++F D + L N + ++ M LAA Q+G+ Sbjct: 1 MA--NIIVFGDKLSNALFSKCIYYGAFNKRFYSKVNQMKLAAVDKRIRILAANQVGLEQN 58 Query: 58 LVVI-DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116 L ++ V INPKI+ S++ E +S P ++A V R I V Y D Sbjct: 59 LFIMLPQSSKMIPSEYKVIINPKILKISNEVIENTEESISFPQFKAKVNRYKTIFVSYDD 118 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168 + GL + Q +D + GI I ++ + + + K +L Sbjct: 119 KKGKTVEEELKGLESIWYQQAIDQVMGIPCISWIASQGKVELKPEYQKQAEL 170 >gi|302779762|ref|XP_002971656.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] gi|300160788|gb|EFJ27405.1| hypothetical protein SELMODRAFT_412161 [Selaginella moellendorffii] Length = 556 Score = 41.3 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 V++PDP LR + I + ++ L ML+V Y DG+GL+ Q+G Sbjct: 73 VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPQLGKGKGWPWY 124 >gi|210630312|ref|ZP_03296375.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279] gi|210160520|gb|EEA91491.1| hypothetical protein COLSTE_00259 [Collinsella stercoris DSM 13279] Length = 139 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 8/145 (5%) Query: 2 VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVM-YSTDGIGLAAVQIGVLYRLVV 60 + K LV + IL S P E + ++ ++++ + D LAA QIGV +V Sbjct: 1 MIKELVHD-EAIL---STPCEVATAADADVAQDLVDTLLSIEDAACLAANQIGVTKAIVA 56 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + + + + + + S A +K S V + Sbjct: 57 LADDEGNAHVMFNPKVLFGMGAYKAEESCLTREGSVKVTRFAKIKVSYDELVDGEL---K 113 Query: 121 HQIIYADGLLATCLQHELDHLNGIL 145 + A +QH DH NG L Sbjct: 114 PRKRDFVEWAAELIQHMCDHCNGKL 138 >gi|295838352|ref|ZP_06825285.1| formylmethionine deformylase [Streptomyces sp. SPB74] gi|295826974|gb|EDY42785.2| formylmethionine deformylase [Streptomyces sp. SPB74] Length = 289 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 18/147 (12%) Query: 6 LVIFPDPILRRVSRPIEKIN------------SDIMNLIDNMLEVMYSTDGIGLAAVQIG 53 +++ P L +RP+ + + I ++D +L + +G+GL+A QIG Sbjct: 127 VLLEGAPEL---ARPVTEFDLPREREEATRTVRAIEAVLDRVLRLCPFPEGVGLSAPQIG 183 Query: 54 VLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113 + ++ A +NP++ S + + C P R V+ ITV Sbjct: 184 IPRAAALVQPPWGAPAVI---LLNPRVTATSRETTESVATCPGHPAPRPPVRHPRDITVA 240 Query: 114 YMDCNAQHQIIYADGLLATCLQHELDH 140 L+ + HE+ H Sbjct: 241 TTTLTGHPLSATYTHPLSHLVHHEIGH 267 >gi|297201621|ref|ZP_06919018.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] gi|197711008|gb|EDY55042.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083] Length = 146 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 3/104 (2%) Query: 39 MYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIP 98 + G GLAA Q+GV RL V D D ++ +NP++ + Sbjct: 15 PWPKAGAGLAANQVGVGLRLFVYDCPDDDEVRHVGHLVNPELDQLDPAGRRLLDDSEGCL 74 Query: 99 DYRADV---KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELD 139 V R R D + + +I G A C HE D Sbjct: 75 SGPGAVMAVPRPDRAGGRGFDRDGEPLVIEGTGYFAGCPAHETD 118 >gi|318077239|ref|ZP_07984571.1| hypothetical protein SSA3_11078 [Streptomyces sp. SA3_actF] Length = 92 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 +NP++I S + + E C R ITVR LA + Sbjct: 8 LLNPRVIAGSRETAEEYESCPGRLGPGTPTSRPNEITVRTTTLTGHPLTTTYTQPLARLV 67 Query: 135 QHELDHLNGILFIDHL 150 HE+DHL G+L HL Sbjct: 68 HHEIDHLKGLLHPPHL 83 >gi|307706187|ref|ZP_07643005.1| polypeptide deformylase family protein [Streptococcus mitis SK321] gi|307618447|gb|EFN97596.1| polypeptide deformylase family protein [Streptococcus mitis SK321] Length = 108 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 45/149 (30%) Query: 2 VKKPLVIFPDPIL--RRVSRPIEKINSDIMNLIDNMLEV--MYSTDGIGLAAVQIGVLYR 57 ++K +V IL +VS+P + + + L ++ + +GLAA IGV R Sbjct: 1 MEKKIVK---DILFLSQVSQPASQED---LYLARDLQDTLLANREICVGLAANMIGVQKR 54 Query: 58 LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117 +++ + P+V NP +++ + + Sbjct: 55 VIIFN-----LGLVPVVMFNPVLLSSEGAYETEEGC------------------------ 85 Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILF 146 + G A QHELDHL G + Sbjct: 86 ------LSLTGFPAQICQHELDHLEGRII 108 >gi|146318043|ref|YP_001197755.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] gi|145688849|gb|ABP89355.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 05ZYH33] Length = 70 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 75 FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCL 134 NP II+ + + + + R I V + D + + + A + Sbjct: 1 MYNPVIISKAKPYQTEEGCLS--LEGTRPTTRYQEIEVEFFDASWKKISLKLTDFQAQIV 58 Query: 135 QHELDHLNGILF 146 QHELDHL GI+ Sbjct: 59 QHELDHLEGIII 70 >gi|38141771|dbj|BAD00707.1| putative polypeptide deformylase [Streptococcus equi subsp. zooepidemicus] Length = 152 Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 13/70 (18%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDG------------IGLAAVQ 51 ++ +P LR V++ +E ++ D + L + M++ + + +GLAA Q Sbjct: 18 DIIREGNPTLRAVAKEVEFPLSDDDIILGEKMMQFLKHSQDPVMGEKLGLRAGVGLAAPQ 77 Query: 52 IGVLYRLVVI 61 I V R++ + Sbjct: 78 IDVSKRIIAV 87 >gi|163750342|ref|ZP_02157583.1| polypeptide deformylase [Shewanella benthica KT99] gi|161330014|gb|EDQ00999.1| polypeptide deformylase [Shewanella benthica KT99] Length = 57 Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDH 149 V + D N G +A QHE HL GI I+ Sbjct: 1 MKDQDVSFQDLNGLEYHPSLTGFIARIFQHEYVHLQGITLIER 43 >gi|295108734|emb|CBL22687.1| N-formylmethionyl-tRNA deformylase [Ruminococcus obeum A2-162] Length = 77 Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 20/43 (46%) Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 R I V Y D N + + G A QHE+DHL+G + Sbjct: 35 TTRYQEIEVEYYDFNWKKKRQRLSGWTAQICQHEIDHLSGKII 77 >gi|307321264|ref|ZP_07600665.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83] gi|306893074|gb|EFN23859.1| hypothetical protein SinmeDRAFT_5123 [Sinorhizobium meliloti AK83] Length = 221 Score = 38.6 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Query: 129 LLATCLQHELDHLNGILFIDHLSRLK--RDMITKKMSKLVQL 168 + C HE HLNG LF+D + + + D I +K+ K+++L Sbjct: 124 WICFCPMHEFTHLNGRLFVDFVGKTETLWDDI-RKLEKILKL 164 >gi|146320223|ref|YP_001199934.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] gi|145691029|gb|ABP91534.1| N-formylmethionyl-tRNA deformylase [Streptococcus suis 98HAH33] Length = 53 Score = 38.6 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%) Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILF 146 R I V + D + + + A +QHELDHL GI+ Sbjct: 10 PTTRYQEIEVEFFDASWKKISLKLTDFQAQIVQHELDHLEGIII 53 >gi|253795648|ref|YP_003038744.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] gi|253739956|gb|ACT34291.1| putative peptide deformylase [Candidatus Hodgkinia cicadicola Dsem] Length = 166 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 128 GLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167 G+ A C QHELDH+ G+L D LS ++ ++ +L + Sbjct: 123 GVAACCCQHELDHVVGVLIAD-LSGGDLRAVSFELKQLRR 161 >gi|118371117|ref|XP_001018758.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89300525|gb|EAR98513.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1142 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 29/174 (16%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV----------------------- 60 + I +M + + L++ QIG+ +VV Sbjct: 871 PTKQLKQSILDMKKTAFVYQLPYLSSNQIGIEKSVVVFSNKIVENKYYDSEYVKFDTYLN 930 Query: 61 --IDLQDHAHRKNPMVFINPKIITFSDDFSVYQE--GCLSIPDYRADVKRSAFITVRYMD 116 I + K +F + ++ C S + V+R I ++YMD Sbjct: 931 PKITKISNVINKQSNIFFTIYHQSLFSKKQKLEDFEECTSTFGIESQVERHTDILIQYMD 990 Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFID-HLSRLKRDMITKKMSKLVQLR 169 + G + Q +D +G L I ++S+ K + I++K L + Sbjct: 991 EEGNMKEEEMSGFKSRLFQQAIDLQSGKLPIKWNISKGK-NRISEKYLNLQNAK 1043 >gi|289805200|ref|ZP_06535829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 40 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 134 LQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 +QHE+DHL G L + S LK+ I +K+ KL +L Sbjct: 1 MQHEMDHLVGKLVYSIICSPLKQQRIRQKVEKLDRL 36 >gi|302765901|ref|XP_002966371.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] gi|300165791|gb|EFJ32398.1| hypothetical protein SELMODRAFT_407854 [Selaginella moellendorffii] Length = 374 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 7 VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61 V++PDP LR + I + ++ L ML+V Y DG+GL+ ++G Sbjct: 73 VLYPDPKLRARNIRINSFDDNVKKL---MLDVTYRRDGVGLSTPRLGKGKGWPWY 124 >gi|126309915|ref|XP_001378780.1| PREDICTED: similar to bromodomain and PHD finger containing, 3 [Monodelphis domestica] Length = 1184 Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 I++D L+ + LE + A Q + D + ++ Sbjct: 179 ISADTFELLVDRLEKESYLESRSSGAQQTLIDEDAFCCVCMDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|115750199|ref|XP_001201887.1| PREDICTED: similar to Rnf10 protein [Strongylocentrotus purpuratus] gi|115921063|ref|XP_780048.2| PREDICTED: similar to Rnf10 protein [Strongylocentrotus purpuratus] Length = 913 Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 4/126 (3%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 S + K + + D++LE S+ G + Q V + ++ ++ Sbjct: 473 STDVTKEPKETEDCTDDVLEESKSSGNTGNPSPQEDVAAPVSEKTGEEEEKKEELDGREE 532 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLL-ATCLQH 136 + + R + Y + Q + G L A CL H Sbjct: 533 KEKEVEDHIEMSPSHADSASVRERKIPPSHSRNVFFYQAEDGQQLFL---GSLNARCLMH 589 Query: 137 ELDHLN 142 E HL Sbjct: 590 EYGHLE 595 >gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1001 Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 131 ATCLQHELDHLNGILFIDHL-SRLKRDMITKKMSKLVQL 168 A +QHE+D+ I F DHL ++RD+ +K+ + + L Sbjct: 752 ANTMQHEIDYYLRIGFTDHLAKPIERDVFIRKVRQYLNL 790 >gi|326920374|ref|XP_003206449.1| PREDICTED: astacin-like metalloendopeptidase-like [Meleagris gallopavo] Length = 410 Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 20/157 (12%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQI------GVLYRLVVIDLQDHAHRKNPMVF 75 +I+S+ + + +LEV + + + R + P V Sbjct: 52 TEIDSEDEVIFNRILEVNKDSSRYLQEGDIVPRRSRSAINCRNCYWPQSRDGIVRIPYVL 111 Query: 76 INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADG------- 128 ++ +++ + + G Sbjct: 112 DPTYEENHVKGIHEAMAEFETLTCINFVKRKTERDYLIIRSADGCWSNYGKVGGGQTVSV 171 Query: 129 -----LLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 + +QHELDH G L +H SR RD + Sbjct: 172 MKGGCMWKGIIQHELDHALGFLH-EH-SRSDRDRYVR 206 >gi|126649165|ref|XP_001388255.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|126117177|gb|EAZ51277.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II] Length = 632 Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 9/106 (8%), Positives = 29/106 (27%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 PIE +N D+ N + + + + Q+ + + N Sbjct: 374 PIEYVNDDLFNYVFCLTDEPSEDLIKNIGRGQLDRMRNEFSYFYPLDCRVSGKDLIFNHL 433 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + +++++ P +++ + Sbjct: 434 TMCLYNHAAIWEDRKDLWPRSFYCNGHVMIDSMKMSKSTGNWITLE 479 >gi|67594615|ref|XP_665813.1| KIAA1352 protein [Cryptosporidium hominis TU502] gi|54656652|gb|EAL35581.1| KIAA1352 protein [Cryptosporidium hominis] Length = 624 Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 9/106 (8%), Positives = 29/106 (27%) Query: 20 PIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPK 79 PIE +N D+ N + + + + Q+ + + N Sbjct: 374 PIEYVNDDLFNYVFCLTDEPSEDLIKNIGRGQLDRMRNEFSYFYPLDCRVSGKDLIFNHL 433 Query: 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125 + + +++++ P +++ + Sbjct: 434 TMCLYNHAAIWEDRKDLWPRSFYCNGHVMIDSMKMSKSTGNWITLE 479 >gi|303242038|ref|ZP_07328530.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus CD2] gi|302590456|gb|EFL60212.1| hypothetical protein AceceDRAFT_3878 [Acetivibrio cellulolyticus CD2] Length = 36 Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 ++ GLLA HE+DHL L ID + + I Sbjct: 1 MVEGTGLLAWEFCHEIDHLEQSLLIDKIIPGTKKSI 36 >gi|309805322|ref|ZP_07699372.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] gi|308165322|gb|EFO67555.1| peptide deformylase [Lactobacillus iners LactinV 09V1-c] Length = 100 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 13/76 (17%) Query: 5 PLVIFPDPILRRVSRPIE-KINSDIMNLIDNML------------EVMYSTDGIGLAAVQ 51 +V + +LR+V + + +N L ++M+ E G+GLAA Q Sbjct: 6 DIVRDGNHVLRQVGKELTFPLNDKYKKLAEDMMQYLINSQDPKIAEKHQLRAGVGLAAPQ 65 Query: 52 IGVLYRLVVIDLQDHA 67 +G ++ + + D Sbjct: 66 VGESVQMAALLVPDDQ 81 >gi|76787258|ref|YP_330655.1| ornithine carbamoyltransferase [Streptococcus agalactiae A909] gi|77405133|ref|ZP_00782232.1| ornithine carbamoyltransferase [Streptococcus agalactiae H36B] gi|77410880|ref|ZP_00787237.1| ornithine carbamoyltransferase [Streptococcus agalactiae CJB111] gi|76562315|gb|ABA44899.1| ornithine carbamoyltransferase [Streptococcus agalactiae A909] gi|77163098|gb|EAO74052.1| ornithine carbamoyltransferase [Streptococcus agalactiae CJB111] gi|77176276|gb|EAO79046.1| ornithine carbamoyltransferase [Streptococcus agalactiae H36B] gi|319746152|gb|EFV98425.1| ornithine carbamoyltransferase [Streptococcus agalactiae ATCC 13813] Length = 332 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 8 IFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA 67 + PDP L + I K + + D++ E + +D + + V ++ Sbjct: 191 LEPDPELLSKCQEIAKTTGASIEITDDIAEGVRDSD---VLYTDVWVSMGEPDEVWKERI 247 Query: 68 HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYAD 127 P + + +++ S + D K I +Y + + Sbjct: 248 ALLEPYRITQEMLNMTENPNVIFEHCLPSF--HNIDTKVGYDIYEKYGLKEMEVSDEVFE 305 Query: 128 GLLATCLQ 135 G + Q Sbjct: 306 GPHSVVFQ 313 >gi|327283585|ref|XP_003226521.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like [Anolis carolinensis] Length = 1159 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 I+++ L+ + LE + + Q + V D + ++ Sbjct: 179 ISAETFELLLDRLEKESYMESRNNGSQQTLIDEDAVCCVCMDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSHPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|291223817|ref|XP_002731904.1| PREDICTED: chloride channel calcium activated 2-like [Saccoglossus kowalevskii] Length = 978 Score = 35.1 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 4/132 (3%) Query: 27 DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSD- 85 + LI+ + V + A+Q + ++ + I + K + + + Sbjct: 51 EDDRLIERIKTVFTTGSEYLFNALQRRIFWKQITILIPKTWSVKPEYMAAKDESFERAHV 110 Query: 86 ---DFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + + K+ +I + + Y G L HE HL Sbjct: 111 IIDNPNPDWGNNPYTQQIGGCGKKGEYIHLTPDYLLDKDTSEYIWGPAGRLLVHEWGHLR 170 Query: 143 GILFIDHLSRLK 154 LF ++ + + Sbjct: 171 YGLFDEYFTSYE 182 >gi|315647001|ref|ZP_07900115.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315277653|gb|EFU40978.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 213 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 137 ELDHLNGILFIDHLSRLKRDMITKKMS 163 E++H+ G LF+D L + +R + +K Sbjct: 96 EINHMFGELFVDELFKRRRKRLEQKYQ 122 >gi|313889848|ref|ZP_07823490.1| ornithine carbamoyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313121893|gb|EFR44990.1| ornithine carbamoyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 332 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 14/126 (11%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 10 PDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR 69 PDP L + I K ++ + D++ + + ++D + + V ++ Sbjct: 193 PDPELLAKCQEIAKKTGAVIEITDDIEKGVLNSD---VLYTDVWVSMGEPDEVWKERIAL 249 Query: 70 KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 P I + +++ S + + + + + + +G Sbjct: 250 LEPYRVTQKMIEMTKNPNVIFEHCLPSFHNTDTKIGKEIYEKYGLKEM--EVSDEVFEGP 307 Query: 130 LATCLQ 135 + Q Sbjct: 308 HSVVFQ 313 >gi|296229725|ref|XP_002760386.1| PREDICTED: tenascin-N isoform 2 [Callithrix jacchus] Length = 1127 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 4/122 (3%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 + ++ + + + L + M+E+ Q R + Sbjct: 102 ATSVQDLLARVKKLEEEMMEMKKQ--CSAQRCCQGATDLRHHCSGHGTFSLETCSCHCQE 159 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--CLQ 135 T + + + G C Sbjct: 160 GWEGTTCEQQACPWACSGHGRCVDGHCLCHEPYVGADCGYPPCPENCSGHGECVRGVCQC 219 Query: 136 HE 137 HE Sbjct: 220 HE 221 >gi|296229723|ref|XP_002760385.1| PREDICTED: tenascin-N isoform 1 [Callithrix jacchus] Length = 1304 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 10/122 (8%), Positives = 23/122 (18%), Gaps = 4/122 (3%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 + ++ + + + L + M+E+ Q R + Sbjct: 102 ATSVQDLLARVKKLEEEMMEMKKQ--CSAQRCCQGATDLRHHCSGHGTFSLETCSCHCQE 159 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLAT--CLQ 135 T + + + G C Sbjct: 160 GWEGTTCEQQACPWACSGHGRCVDGHCLCHEPYVGADCGYPPCPENCSGHGECVRGVCQC 219 Query: 136 HE 137 HE Sbjct: 220 HE 221 >gi|198418831|ref|XP_002122150.1| PREDICTED: similar to sperm phosphodiesterase 5 [Ciona intestinalis] Length = 950 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 6/136 (4%) Query: 6 LVIFPDPILRRVSRPIEKINS-DIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64 + + D + R V+ PI + ++ +++ S D + A+++ + + Sbjct: 509 IRPWQDEVDRVVNEPIPEGEKYNLYQF--TFSDLLMSDDETVMGAMRMFLDLDAFNLFHI 566 Query: 65 DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124 ++ L++ + + Sbjct: 567 RQETMLRWLITTRRCYRPVYY---HNWRHGLNVAHTMFLLLDRMGKDTNTPGIDKAFNDR 623 Query: 125 YADGLLATCLQHELDH 140 L+ C H++DH Sbjct: 624 EKFALVVACFCHDIDH 639 >gi|73972700|ref|XP_538883.2| PREDICTED: similar to Bromodomain and PHD finger-containing protein 3 [Canis familiaris] Length = 1319 Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 2/116 (1%) Query: 22 EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII 81 +++D L+ + LE + A Q + D + ++ Sbjct: 289 SVVSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICN 348 Query: 82 --TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 349 LAVHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 404 >gi|157821409|ref|NP_001101085.1| bromodomain and PHD finger-containing protein 3 [Rattus norvegicus] gi|149043488|gb|EDL96939.1| bromodomain and PHD finger containing, 3 (predicted) [Rattus norvegicus] Length = 1199 Score = 34.4 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|124486783|ref|NP_001074784.1| bromodomain and PHD finger-containing protein 3 [Mus musculus] gi|187465752|emb|CAQ51742.1| bromodomain and PHD finger containing, 3 [Mus musculus] gi|187956992|gb|AAI57916.1| Bromodomain and PHD finger containing, 3 [Mus musculus] Length = 1204 Score = 34.4 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|148690644|gb|EDL22591.1| mCG18535 [Mus musculus] Length = 1199 Score = 34.4 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|281338425|gb|EFB14009.1| hypothetical protein PANDA_002219 [Ailuropoda melanoleuca] Length = 1206 Score = 34.4 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|329663705|ref|NP_001192556.1| bromodomain and PHD finger-containing protein 3 [Bos taurus] gi|297488932|ref|XP_002697251.1| PREDICTED: CG1845-like [Bos taurus] gi|296474528|gb|DAA16643.1| CG1845-like [Bos taurus] Length = 1207 Score = 34.4 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|194223447|ref|XP_001918146.1| PREDICTED: bromodomain and PHD finger containing, 3 [Equus caballus] Length = 1206 Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 180 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 239 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 240 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 293 >gi|327191719|gb|EGE58721.1| hypothetical protein RHECNPAF_280017 [Rhizobium etli CNPAF512] Length = 371 Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 2/119 (1%) Query: 18 SRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFIN 77 + P+++++ ++ + + + + A Q+ + ID D A + Sbjct: 237 AVPVDQLHDELRRIAEQLEQAF--AVQRAEHAGQVVGHHPHAGIDQADIAPCAAETNLLR 294 Query: 78 PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQH 136 + F Q + D + ++ + + A +QH Sbjct: 295 LQQHHLRAGFGKMQGRGEAGVAATDDDDVGRYRACERRGSRRFGCGLFPEAMGARIIQH 353 >gi|291396103|ref|XP_002714704.1| PREDICTED: bromodomain and PHD finger containing, 3 [Oryctolagus cuniculus] Length = 1207 Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|114607125|ref|XP_518433.2| PREDICTED: bromodomain and PHD finger containing, 3 isoform 5 [Pan troglodytes] gi|114607127|ref|XP_001172835.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 3 [Pan troglodytes] gi|114607129|ref|XP_001172849.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 4 [Pan troglodytes] Length = 1205 Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|301756985|ref|XP_002914339.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like [Ailuropoda melanoleuca] Length = 1207 Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|297677960|ref|XP_002816850.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like isoform 1 [Pongo abelii] gi|297677962|ref|XP_002816851.1| PREDICTED: bromodomain and PHD finger-containing protein 3-like isoform 2 [Pongo abelii] Length = 1205 Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|149410463|ref|XP_001514689.1| PREDICTED: similar to Chromosome 14 open reading frame 106 [Ornithorhynchus anatinus] Length = 921 Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 5/119 (4%) Query: 56 YRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT--VR 113 R + ++ + + F + +S + R + + ++ Sbjct: 449 IRKFMFGFPENWKQYVEDFLQDLSTDEAFSIFRFIELSPVSHNPSKVSELRYSRVGRPLK 508 Query: 114 YMDCNAQHQIIYADGLLATCLQHE--LDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 + + D + L HE +DHL + + + K + KK+ K V+ + Sbjct: 509 SPLQFWRGEREICDHEMNVTL-HEGGVDHLQSLETTGKMEKKKLSLARKKVKKEVKTNE 566 >gi|253741601|gb|EES98467.1| Protein phosphatase 2A regulatory subunit, putative [Giardia intestinalis ATCC 50581] Length = 892 Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 12/120 (10%), Positives = 30/120 (25%), Gaps = 5/120 (4%) Query: 25 NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFS 84 DIM+ +M + + Q ++ ++V + + +I Sbjct: 746 TDDIMHFCPDMEAMYHCHKRDTNR--QKDIMCQMVDMAKHTQHCVGEGFYHQDQRISKRD 803 Query: 85 DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGI 144 Q ++ + + + A + D L G+ Sbjct: 804 VRRCKTQGNLFNVFFNFTKAVQFECKDPYTIRYSPHMFEKTTWERFARII---YDSLEGM 860 >gi|6331389|dbj|BAA86600.1| KIAA1286 protein [Homo sapiens] Length = 1214 Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 188 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 247 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 248 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 301 >gi|168273214|dbj|BAG10446.1| bromodomain and PHD finger-containing protein 3 [synthetic construct] Length = 1205 Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292 >gi|148727368|ref|NP_056510.2| bromodomain and PHD finger-containing protein 3 [Homo sapiens] gi|71153496|sp|Q9ULD4|BRPF3_HUMAN RecName: Full=Bromodomain and PHD finger-containing protein 3 gi|56208192|emb|CAI21669.1| bromodomain and PHD finger containing, 3 [Homo sapiens] gi|119624283|gb|EAX03878.1| bromodomain and PHD finger containing, 3, isoform CRA_b [Homo sapiens] Length = 1205 Score = 34.0 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292 >gi|119624285|gb|EAX03880.1| bromodomain and PHD finger containing, 3, isoform CRA_d [Homo sapiens] gi|119624287|gb|EAX03882.1| bromodomain and PHD finger containing, 3, isoform CRA_d [Homo sapiens] Length = 1204 Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCILCPNKGGAFKQTSDGHWAHVVC 292 >gi|311260309|ref|XP_001927497.2| PREDICTED: bromodomain and PHD finger-containing protein 3 [Sus scrofa] Length = 1210 Score = 34.0 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSNGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|114607133|ref|XP_001172802.1| PREDICTED: bromodomain and PHD finger containing, 3 isoform 1 [Pan troglodytes] Length = 1004 Score = 33.6 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 2/114 (1%) Query: 24 INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKII-- 81 +++D L+ + LE + A Q + D + ++ Sbjct: 179 VSADTFELLVDRLEKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLA 238 Query: 82 TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 + + V S + +DG A + Sbjct: 239 VHQECYGVPYIPEGQWLCRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVC 292 >gi|118094412|ref|XP_001234330.1| PREDICTED: similar to calcium-activated chloride channel-2 [Gallus gallus] Length = 930 Score = 33.6 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 4/127 (3%) Query: 26 SDIMNLIDNMLEVMYSTDGIGLAAVQ---IGVLYRLVVIDLQDHAHRKNPMVFINPKIIT 82 + L+ ++ E++ +A + ++++ + P K Sbjct: 43 PEDGRLVAHLQEMITEASSYLFSATKGRFYFRSVKILIPPTWKEKSYEKPKHETYEKADV 102 Query: 83 FSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLN 142 + A K +I + A G HE HL Sbjct: 103 IVAAPYWKHGDDPYTLQHEACGKMGKYIHFT-PNFLANDYATDIYGSRGRTFVHEWAHLR 161 Query: 143 GILFIDH 149 +F ++ Sbjct: 162 WGVFDEY 168 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.312 0.126 0.382 Lambda K H 0.267 0.0391 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,462,128,756 Number of Sequences: 13984884 Number of extensions: 59851890 Number of successful extensions: 370845 Number of sequences better than 10.0: 3535 Number of HSP's better than 10.0 without gapping: 3415 Number of HSP's successfully gapped in prelim test: 120 Number of HSP's that attempted gapping in prelim test: 363797 Number of HSP's gapped (non-prelim): 3649 length of query: 170 length of database: 4,792,584,752 effective HSP length: 128 effective length of query: 42 effective length of database: 3,002,519,600 effective search space: 126105823200 effective search space used: 126105823200 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 75 (33.6 bits)