BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
 gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
          Length = 174

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E +++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETVDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 EQAVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
 gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
          Length = 172

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLV+ PDPILR+ S P+E++++++   ID+MLE MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MTIKPLVLLPDPILRQQSLPVERVDAELEGFIDDMLETMYDAPGIGLAAIQVGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K+P VFINP+++   D  SVY+EGCLSIPDY ADV+R   ITV+Y+  + +
Sbjct: 61  IDVAGKDEPKSPQVFINPEVVATGDGISVYEEGCLSIPDYYADVERPETITVKYLGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRDM+ +K +KL + R
Sbjct: 121 EHTTEADGLLATCLQHEIDHLNGVLFIDHISKLKRDMVVRKFTKLAKQR 169


>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
 gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
          Length = 170

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/164 (49%), Positives = 115/164 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V  PDP LR +S P++ ++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MTIRPIVTAPDPRLREISTPVDGVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP I   + D + YQEGCLS+PDY  +++R A  TV Y+D +  
Sbjct: 61  MDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGCLSVPDYYEEIERPATCTVDYLDYDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            + + A+GLLATC+QHE+DHL G+LFIDHLSRLKR+ I KK+ +
Sbjct: 121 PRTLEAEGLLATCIQHEMDHLEGVLFIDHLSRLKRERILKKLKR 164


>gi|169797633|ref|YP_001715426.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
 gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
 gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|294838986|ref|ZP_06783669.1| peptide deformylase [Acinetobacter sp. 6013113]
 gi|294842464|ref|ZP_06787147.1| peptide deformylase [Acinetobacter sp. 6014059]
 gi|294858778|ref|ZP_06796547.1| peptide deformylase [Acinetobacter sp. 6013150]
 gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
 gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
 gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
 gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii AYE]
 gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
 gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
           ATCC 17978]
 gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
 gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
 gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606]
 gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
 gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
          Length = 176

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|110632755|ref|YP_672963.1| peptide deformylase [Mesorhizobium sp. BNC1]
 gi|122966266|sp|Q11LC7|DEF_MESSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110283739|gb|ABG61798.1| peptide deformylase [Chelativorans sp. BNC1]
          Length = 177

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 128/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLV  PDP+LR+VS+P+E+++  +     +MLE MY   GIGLAA+Q+G   R++V
Sbjct: 1   MAIRPLVTLPDPLLRQVSKPVERVDESLRKFAGDMLETMYDAPGIGLAAIQVGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +    KNP VFINP+I++ SD  S ++EGCLSIPDY A+V+R A +TV+Y+D + +
Sbjct: 61  LDVAEKDEPKNPQVFINPEIVSRSDVPSFHEEGCLSIPDYYAEVERPAEVTVKYVDLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            QI+ A G+LATCLQHE+DHLNG+LFID+LS+LKRDM+ +K  KL + R
Sbjct: 121 EQIVEAKGILATCLQHEIDHLNGVLFIDYLSKLKRDMVVRKFRKLAKDR 169


>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
 gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
          Length = 168

 Score =  164 bits (414), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|169632177|ref|YP_001705913.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii SDF]
 gi|238688145|sp|B0VNL8|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter baumannii]
          Length = 176

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR  + +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRVREKVEKIVRQRE 168


>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
          Length = 175

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 92/169 (54%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLVILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +I ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 QHLIEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
 gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
          Length = 168

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHLQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
 gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
          Length = 174

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPILRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPRRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPKI+  S++ SVY+EGCLSIPDY A+V+R A I V Y+D + +
Sbjct: 61  LDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGCLSIPDYYAEVERPAAIAVEYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++S+LKRDM+ +K +K  + R
Sbjct: 121 QQSVEADGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRKFTKAAKTR 169


>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
 gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
          Length = 168

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
 gi|254690651|ref|ZP_05153905.1| peptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|254696044|ref|ZP_05157872.1| peptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|254699153|ref|ZP_05160981.1| peptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700229|ref|ZP_05162057.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|254703350|ref|ZP_05165178.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|254705509|ref|ZP_05167337.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|254710740|ref|ZP_05172551.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|254732597|ref|ZP_05191175.1| peptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|256029123|ref|ZP_05442737.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|256043903|ref|ZP_05446822.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058806|ref|ZP_05449022.1| peptide deformylase [Brucella neotomae 5K33]
 gi|256111033|ref|ZP_05452095.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|256157315|ref|ZP_05455233.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|256253707|ref|ZP_05459243.1| peptide deformylase [Brucella ceti B1/94]
 gi|256255833|ref|ZP_05461369.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260167785|ref|ZP_05754596.1| peptide deformylase [Brucella sp. F5/99]
 gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
 gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
 gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|54036953|sp|P63914|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040741|sp|P63913|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
 gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
 gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
 gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
 gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
 gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
 gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
 gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
 gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
 gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
 gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
 gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
 gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
 gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
 gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
 gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
 gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
 gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
 gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
 gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
 gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
 gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
          Length = 175

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
 gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
          Length = 175

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|254720138|ref|ZP_05181949.1| peptide deformylase [Brucella sp. 83/13]
 gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
 gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
 gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
 gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
          Length = 175

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/169 (53%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +FINP I+  SD+ S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|23396548|sp|Q92SH6|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
          Length = 174

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 1   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 61  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 121 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 169


>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
 gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
 gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
 gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
 gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
 gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
 gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
           2308]
 gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
 gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
 gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
 gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
 gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
 gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
 gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
          Length = 187

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 13  MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 73  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 181


>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
 gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
          Length = 176

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAQPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++  +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSEN--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R+
Sbjct: 119 AFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRQRN 168


>gi|319780347|ref|YP_004139823.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166235|gb|ADV09773.1| peptide deformylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 176

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 95/169 (56%), Positives = 127/169 (75%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   RL+V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q I A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL + +
Sbjct: 121 LQEIEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLARDK 169


>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella sp. BO1]
 gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella sp. BO1]
          Length = 175

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 118/169 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSAPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMDADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|330720123|gb|EGG98527.1| Peptide deformylase [gamma proteobacterium IMCC2047]
          Length = 168

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  + PI  ++  I  L D+MLE MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRNKALPINDVDDSIRKLADDMLETMYYAPGIGLAATQVNVQKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP++    D F    EGCLS+P +   V+R   I VR  D N +
Sbjct: 61  IDVSED--KSQPLVFINPEVEVIGDGFEEMDEGCLSVPGFYETVQRPDHIKVRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  DG+LA C+QHE+DHL+G LF+D+LS LKR  I KK+ K+ + R
Sbjct: 119 TFEIEDDGMLAVCIQHEIDHLDGKLFVDYLSPLKRQRIRKKLEKIHRQR 167


>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
 gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
 gi|32363155|sp|Q88RR1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
 gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
 gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
          Length = 168

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ + +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   + D   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter sp. DR1]
 gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter sp. DR1]
          Length = 176

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|118589715|ref|ZP_01547120.1| peptide deformylase [Stappia aggregata IAM 12614]
 gi|118437801|gb|EAV44437.1| peptide deformylase [Stappia aggregata IAM 12614]
          Length = 202

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 121/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP+LR V  P+  ++ D+  L D+MLE MY   GIGLAA QIG+L R+ V
Sbjct: 31  MTIRPIITIPDPVLREVCAPVATVDDDVRKLADDMLETMYDAPGIGLAASQIGLLQRIFV 90

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINPKI+  SDD SVYQEGCLSIPDY  +V+R A +TV++++    
Sbjct: 91  LDVAKDDAPKEPMVFINPKIVWSSDDLSVYQEGCLSIPDYYEEVERPAEVTVQFLNREGA 150

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  ++
Sbjct: 151 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKM 198


>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
 gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
          Length = 176

 Score =  163 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 113/170 (66%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   + +PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--SKDDPMVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
 gi|122959726|sp|Q0VTE1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
          Length = 168

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M E MY+  GIGLAA Q+ V  +L+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMFETMYAAPGIGLAATQVDVHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  ++  PMVFINP+I   +++ + Y+EGCLS+P +   V R A + +  +D +  
Sbjct: 61  MDLSEDHNK--PMVFINPQITPLTEEQAPYEEGCLSVPGFYEKVTRPARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEMDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
 gi|307301317|ref|ZP_07581079.1| peptide deformylase [Sinorhizobium meliloti BL225C]
 gi|307317988|ref|ZP_07597425.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
 gi|306896390|gb|EFN27139.1| peptide deformylase [Sinorhizobium meliloti AK83]
 gi|306903773|gb|EFN34360.1| peptide deformylase [Sinorhizobium meliloti BL225C]
          Length = 178

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 130/169 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS P+E I++DI  L D+MLE MY   GIGLAA+QIGV  RL+V
Sbjct: 5   MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P+VFINPK++  S++ SVY+EGCLSIPDY A+V+R A ITV Y+D   +
Sbjct: 65  LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + A+GLLATCLQHE+DHLNG+LFID++S+LKRDM+ ++ +K  + R
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTKAAKTR 173


>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
 gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
          Length = 176

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYAAPGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+VFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  IDLSE--AKDEPLVFINPKITPLTEDKQQYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|254712790|ref|ZP_05174601.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|254715859|ref|ZP_05177670.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
 gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
 gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
          Length = 175

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/169 (52%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDALGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P +F+NP I+  SD  S Y+EGCLSIPDY A+V+R A + V Y D + +
Sbjct: 61  IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   R
Sbjct: 121 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQR 169


>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
 gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
 gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
          Length = 176

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTLAKPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   ++D   Y+EGCLS+P     V+R + + +  ++    
Sbjct: 61  MDLSEE--KNQPMVFINPKITPLTEDTQPYEEGCLSVPQIYDKVERPSRVKIEALNLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ KLV+ R
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLVRSR 167


>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
 gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
          Length = 168

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++  +  LIDNMLE MY+  GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVEVVDDALRTLIDNMLETMYAASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  ++     PM+FINP++    D    Y EGCLS+P +  +V R   I V  +  + +
Sbjct: 61  LDTSENRDS--PMIFINPQVTILDDTLGSYDEGCLSVPGFYEEVNRPRTIRVEALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 AFSLELDGLTAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|326567834|gb|EGE17938.1| peptide deformylase [Moraxella catarrhalis 12P80B1]
 gi|326568164|gb|EGE18246.1| peptide deformylase [Moraxella catarrhalis BC8]
 gi|326573749|gb|EGE23707.1| peptide deformylase [Moraxella catarrhalis O35E]
          Length = 184

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|296114064|ref|YP_003628002.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|295921758|gb|ADG62109.1| peptide deformylase [Moraxella catarrhalis RH4]
 gi|326559449|gb|EGE09872.1| peptide deformylase [Moraxella catarrhalis 7169]
 gi|326561289|gb|EGE11648.1| peptide deformylase [Moraxella catarrhalis 46P47B1]
 gi|326565177|gb|EGE15368.1| peptide deformylase [Moraxella catarrhalis 103P14B1]
 gi|326566131|gb|EGE16288.1| peptide deformylase [Moraxella catarrhalis BC1]
 gi|326572198|gb|EGE22194.1| peptide deformylase [Moraxella catarrhalis BC7]
 gi|326572807|gb|EGE22792.1| peptide deformylase [Moraxella catarrhalis CO72]
 gi|326574626|gb|EGE24562.1| peptide deformylase [Moraxella catarrhalis 101P30B1]
          Length = 184

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR +++P+   +  +  LI++M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILTYPDPRLRTLAKPVTVFDDRLKQLIEDMFETMYDARGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL       +P VFINPK+    D+ S YQEGCLS+P+    ++R + + +  +D + Q
Sbjct: 61  MDLARKDEPPSPQVFINPKVTPLVDEHSSYQEGCLSVPEVFDTIERPSRVRIEALDKDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+GLLA C+QHE+DHLNG LF+D+LS LK+     K+ K ++ R+
Sbjct: 121 PFEIEAEGLLAVCIQHEMDHLNGKLFVDYLSTLKQSRARDKVKKALKARE 170


>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
 gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
          Length = 168

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P+EK++ ++  LID+M+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAKLEILEFPDPRLRTVAKPVEKVDDELRKLIDDMIETMYDASGIGLAATQVNVHQRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +   P V+INP+I   +D+ + Y+EGCLS+P +   VKR+A + +  +D +  
Sbjct: 61  MDLSEERNE--PKVYINPQITPLTDELAPYEEGCLSVPGFYEKVKRAARVRINALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLATC+QHE+DHL+G LF+D++SRLKRD I KK+ K+ + +
Sbjct: 119 AFEVEADELLATCIQHEIDHLDGKLFVDYVSRLKRDRIKKKLEKIHRQQ 167


>gi|114705885|ref|ZP_01438788.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538731|gb|EAU41852.1| peptide deformylase protein [Fulvimarina pelagi HTCC2506]
          Length = 173

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/169 (51%), Positives = 124/169 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S P+ +++  +    D+MLE MY   GIGLAA+Q+G   R++ 
Sbjct: 1   MTIKPLIILPDPVLRKTSEPVARVDDALKRFADDMLETMYEAPGIGLAAIQVGEPLRMLT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VF+NP+I++ S+DFSVY+EGCLSIP+Y A+V+R A ++VRY+  + +
Sbjct: 61  IDISKEEEAKEPRVFLNPEIVSRSEDFSVYEEGCLSIPEYFAEVERPARVSVRYLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATCLQHE+DHLNG+LFID+LS+LKRDM+ KK +K  + +
Sbjct: 121 MHEEEAEGLLATCLQHEIDHLNGVLFIDYLSKLKRDMVIKKFTKAARTK 169


>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 171

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDIAREGEEKQPQVFINPEVVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
 gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
          Length = 176

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +M E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R + + +  ++   Q
Sbjct: 61  MDLSE--SKDEPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVDRPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHL G LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLKRQRAREKVEKIVRQRE 168


>gi|114321775|ref|YP_743458.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310781|sp|Q0A5B9|DEF_ALHEH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114228169|gb|ABI57968.1| peptide deformylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 178

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR V+ P+ +++ DI  L D+MLE MY   GIGLAA Q+GV  R+VV
Sbjct: 1   MAILDILVYPDPRLREVAAPVAQVDDDIRRLADDMLETMYDAQGIGLAATQVGVNQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +    + P+V INP+I+      +  +  CLSIP +  DV+R+  I  R +D   +
Sbjct: 61  MDLAEE-GARQPLVLINPEILDREGAATGQEG-CLSIPGFYEDVERAERIRFRALDREGR 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL+A C+QHE+DHL+G LF+D+LS LKR  I +K+ KLV+ 
Sbjct: 119 PWEQEAEGLMAVCVQHEIDHLDGKLFVDYLSELKRKRIRRKLEKLVRQ 166


>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
 gi|158514117|sp|A4VFH8|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
 gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
          Length = 168

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D    YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDRSE--PRVFINPEFEPLTDQMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K+ + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLKRDRIKKKLEKIHRQQ 167


>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 171

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+ S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQASKPIERVDADLQGLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+++D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKFLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|289209433|ref|YP_003461499.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
 gi|288945064|gb|ADC72763.1| peptide deformylase [Thioalkalivibrio sp. K90mix]
          Length = 177

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/165 (43%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ FPDP LR  + P+E ++ +I  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAKREILHFPDPRLRLKAEPVETVDDEIRTLVDDMLETMYDAPGIGLAATQINVQKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D      P V INP+I+  S +  + +  CLS+P +   V+R+  I VR +  + +
Sbjct: 61  ADVSDDQSE--PHVLINPEILETSGEEEMDEG-CLSVPGFYEKVQRADRIRVRALGRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K 
Sbjct: 118 PFELDIDGLLAVCIQHEIDHLDGKLFVDYLSSLKRNRIRKKLEKQ 162


>gi|68347834|gb|AAY95440.1| polypeptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 213

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 46  MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 105

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 106 MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 163

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 164 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 212


>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
 gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
          Length = 189

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/168 (57%), Positives = 124/168 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++  PDP+LR V  PIEK++++ + L D+MLE MY   GIGLAA Q+G+L R+ V
Sbjct: 18  MTKRPIITIPDPVLREVCAPIEKVDAETIALADDMLETMYDAPGIGLAASQVGILKRIFV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K PMVFINP+II + D+ SVYQEGCLSIPDY  DV+R A + V++MD    
Sbjct: 78  LDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGCLSIPDYYEDVERPAEVAVKFMDREGA 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q I ADGLLATC+QHELDHLNG LFID+LS+LKRD + KK +K  +L
Sbjct: 138 EQEIKADGLLATCIQHELDHLNGKLFIDYLSKLKRDRVVKKFTKQAKL 185


>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
 gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
          Length = 168

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+E ++ D+  LIDNM+E MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MAVLDILEFPDPRLRTVAKPVESVDDDLRALIDNMIETMYEASGIGLAATQVNVHKRLLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ ++  R  PMVFINP++    D    Y EGCLS+P +  +V R   + V  +  + +
Sbjct: 61  LDISEN--RDQPMVFINPEVTVLDDTLGSYDEGCLSVPGFYEEVNRPRKVRVEALGRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL A CLQHE+DHL+G LF+D++S LKR+ I  K+ K  +LR
Sbjct: 119 SFSQELDGLAAICLQHEIDHLDGKLFVDYISPLKRNRIRSKLEKAHRLR 167


>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
 gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
          Length = 175

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+VS+P+E+ +  +     +M + MY   GIGLAA+Q+G   R++V
Sbjct: 1   MSVKPLLILPDPVLRQVSKPVERFDDQLRKFAGDMFDTMYDAPGIGLAAIQVGEPIRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P VFINP+I+  +D+ S Y+EGCLSIPDY A+V+R A I V Y D + +
Sbjct: 61  IDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGCLSIPDYYAEVERPAAIKVNYFDADGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+ KK  KL   
Sbjct: 121 PHAMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQ 168


>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 171

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE+++SD+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDSDLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ S+Y+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDISREGEEKQPQVFINPEIVKSSDERSLYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
 gi|229487488|sp|B6JJP8|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
          Length = 171

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LRRVS P+EKI S++  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 1   MAIREIISIPDKRLRRVSEPVEKITSEVRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P VFINP+I++ S+D +VY+EGCLSIP+Y  +V+R A + VR+MD   +
Sbjct: 61  MDLAKKEGESAPRVFINPEILSKSEDIAVYEEGCLSIPEYYEEVERPASVRVRFMDLEGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +L
Sbjct: 121 VHEEDAEGLFATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAKL 168


>gi|192358847|ref|YP_001984035.1| peptide deformylase [Cellvibrio japonicus Ueda107]
 gi|238692437|sp|B3PGY7|DEF_CELJU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190685012|gb|ACE82690.1| peptide deformylase [Cellvibrio japonicus Ueda107]
          Length = 169

 Score =  161 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR V++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILEFPDPRLRTVAKPVTQVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  P+VFINP+I    ++ S Y EGCLS+P +   V+R   I V+ +D    
Sbjct: 61  IDVSED--KSQPLVFINPEIEVLDEELSQYDEGCLSVPGFYETVERPGHIRVKALDRAGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   GLLA C+QHELDHLNG LF+DH+S  KR  I  K+ K  +
Sbjct: 119 AFELQPQGLLAVCIQHELDHLNGKLFVDHISPFKRSRIRSKLEKKHK 165


>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
          Length = 171

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
 gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
          Length = 168

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
 gi|166198520|sp|A4XNB3|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
          Length = 168

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P++ ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVDVVDDSIRQLVDDMFETMYDAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDKSE--PRVFINPEFESLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + R
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQR 167


>gi|49081366|gb|AAT50122.1| PA0019 [synthetic construct]
          Length = 169

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
 gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
          Length = 177

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR ++ P+E++  +I  L  +M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAEPVEEVTDEIRQLAADMFETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +H  +  P+VFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSEH--KDQPLVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ KL + R
Sbjct: 119 AFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKLTRQR 167


>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
           deformylase) [Acinetobacter sp. ATCC 27244]
 gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 176

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   +++   Y+EGCLS+P     V+R + + +  ++   Q
Sbjct: 61  MDLSEE--KNQPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKVERPSRVKIEAINLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|330806738|ref|YP_004351200.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 168

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  T +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDRSE--PRVFINPEFETLTDEMDQYQEGCLSVPGFYENVDRPQKVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
 gi|122316781|sp|Q0ASK2|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
          Length = 174

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 113/170 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDPIL+ VS+P+++++ D+  L+D+ML+ MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPILKEVSQPVDQVDDDLRELMDDMLQTMYAADGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  F+NP +   SD    Y+EGCLS+P    +++R   I ++Y+D +  
Sbjct: 61  MDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGCLSVPTVYDEIERPDRIHIQYLDYDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+G+ A C+QHE+DHL G+LFID+LSRLKR    +K+ K+ + +D
Sbjct: 121 ECEEIAEGMFAVCIQHEMDHLEGVLFIDYLSRLKRQRAVQKVKKVEKSKD 170


>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
 gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
          Length = 176

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+E++  DI  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDPRLRTIAKPVEEVTDDIRQLAADMLETMYEAPGIGLAATQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPK+   + +   Y+EGCLS+P     V+R + + +  ++ + Q
Sbjct: 61  MDLSEE--KNQPMVFINPKVTPLTQETQPYEEGCLSVPQIYDKVERPSRVKIEAINLDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFELEADELLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
 gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
          Length = 189

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/168 (49%), Positives = 117/168 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR VS P++KI  +I  L ++M E MY   GIGLAA+Q+ V  RL+ 
Sbjct: 19  MAIREIISIPDKRLRLVSEPVDKITPEIRALAEDMFETMYDAPGIGLAAIQVAVPLRLIT 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K P VFINP+I++ SDD SVY+EGCLSIP+Y  +V+R A + +RYMD + +
Sbjct: 79  MDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGCLSIPEYYEEVERPASVRIRYMDLDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GL ATC+QHE+DH+NG+LFID+LS+LKRD + KK +K  +L
Sbjct: 139 VHEEDAEGLFATCIQHEIDHINGVLFIDYLSKLKRDRVMKKFTKAAKL 186


>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
          Length = 171

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP LR++S+PIE++++++  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPFLRQLSKPIERVDAELQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
 gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
          Length = 168

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
 gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
 gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
 gi|17432949|sp|Q9I7A8|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
 gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
 gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
 gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
          Length = 168

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas fluorescens Pf-5]
          Length = 168

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +D+   YQEGCLS+P +  +V R   + ++ +D + Q
Sbjct: 61  MDLSEDRSE--PRVFINPEFEALTDEMDQYQEGCLSVPGFYENVDRPQRVKIKALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQQ 167


>gi|328545268|ref|YP_004305377.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
 gi|326415010|gb|ADZ72073.1| Peptide deformylase 1 [Polymorphum gilvum SL003B-26A1]
          Length = 172

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/170 (52%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++I PDP+LR+   P+ K++  I  L D+MLE MY+  GIGLAA QIGVL RL V
Sbjct: 1   MTKRDILIIPDPVLRQHCEPVVKVDDAIRKLADDMLETMYAAPGIGLAASQIGVLKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + PMVFINP+I+  S++ SVYQEGCLSIP+Y  +V+R A + VR+ + +  
Sbjct: 61  LDVAKEDQPRAPMVFINPEIVWASEEMSVYQEGCLSIPEYYEEVERPASVRVRFFNRDGD 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + ADGLLATC+QHE DHLNG LFID+LS+LKRD + KK +K  +  +
Sbjct: 121 EQELQADGLLATCIQHEYDHLNGRLFIDYLSKLKRDRVVKKFAKQARHAE 170


>gi|190890084|ref|YP_001976626.1| peptide deformylase protein [Rhizobium etli CIAT 652]
 gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
          Length = 171

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
          Length = 168

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP++   +DD   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRTE--PRVFINPELEPLTDDMGQYQEGCLSVPGFYENVDRPQRVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+ LLA C+QHE DHLNG LF+D+LS LKRD I KK+ KL + 
Sbjct: 119 PYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKLHRQ 166


>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
 gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
          Length = 168

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+  ++ ++  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+  + +D+   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDRTE--PRVFINPEFESLTDEMEQYQEGCLSVPGFYENVDRPQKVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKQHRQ 166


>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
           Aeruginosa
 gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
 gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
           Deformylase Inhibitors
          Length = 180

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 13  MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 73  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 179


>gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
          Length = 171

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 132/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVEYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|90419800|ref|ZP_01227709.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335841|gb|EAS49589.1| peptide deformylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 170

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+P+E ++  +  L D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIKPLIILPDPVLRQTSKPVETVDDQVRRLADDMLETMYDAPGIGLAAIQIGEPLRMMV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+        P +F+NP+I+T SD  SVY+EGCLSIPDY A+V+R A +TVRY+  + +
Sbjct: 61  IDVSKEEEENAPRIFLNPEILTISDAVSVYEEGCLSIPDYYAEVERPAEVTVRYLGLDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADG+LATC+QHELDHLNG+LFIDH+S+LKRDM+ KK +K  +
Sbjct: 121 MHEETADGILATCVQHELDHLNGVLFIDHISKLKRDMVVKKFTKAAR 167


>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
 gi|123090994|sp|Q21PV5|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
          Length = 172

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR +++P+ K++  I  LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDPRLRTIAKPVAKVDQRIRTLIDDMFETMYDAPGIGLAATQVNVHEQVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +      PMVFINP I     +   Y+EGCLS+P +   V R   I V  +D + +
Sbjct: 61  IDLGEETKE--PMVFINPSIEILDQEHYEYEEGCLSVPGFYEQVSRPKHIRVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I  +GLLA C+QHE+DHLNG LF+D++S +KR  I KK+ K  + 
Sbjct: 119 EFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIKRQRIRKKLEKQHRQ 166


>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
 gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
          Length = 173

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 116/169 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP LR +++P+  I+ +I  L D+MLE MY   GIGLA  Q+G L R++V
Sbjct: 1   MTTRPILIHPDPRLRAIAKPLPDISDEIRRLADDMLETMYDAPGIGLAGPQVGQLQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P+V +NP+I+  SDD SVY+EGCLSIPD  A+V+R A + VR++D N  
Sbjct: 61  LDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGCLSIPDQYAEVERPASVKVRWLDLNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    +GL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + R
Sbjct: 121 EQDREMEGLWATCVQHEIDHLDGKLFIDYLGPMKRQLITRKMEKLKRER 169


>gi|296447194|ref|ZP_06889124.1| peptide deformylase [Methylosinus trichosporium OB3b]
 gi|296255253|gb|EFH02350.1| peptide deformylase [Methylosinus trichosporium OB3b]
          Length = 179

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/164 (52%), Positives = 113/164 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR VS P+  I+++I  L+D+MLE MY   G+GLAA+Q+ V  R++V
Sbjct: 1   MAIRPIITLPDPRLRLVSEPVAVIDAEIRQLLDDMLETMYDAPGVGLAAIQVAVAKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D       KNPMVFINP+I+  S++  VYQEGCLS+PDY  +V+R A + V ++D    
Sbjct: 61  ADATRGDEPKNPMVFINPQIVWASEELGVYQEGCLSVPDYFEEVQRPARVRVSFLDREGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLAT LQHE+DHL G LFIDHLSRLKR+ + KK  K
Sbjct: 121 TCEIEADGLLATVLQHEIDHLEGGLFIDHLSRLKRERVVKKFVK 164


>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
 gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
          Length = 171

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 133/169 (78%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQLSKPIERVDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SDD SVY+EGCLSIPDY A+V+R A ++V+Y+D   +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGCLSIPDYYAEVERPATVSVKYLDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDHISRLKREMVIKKFTKAAKSK 169


>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
 gi|259645177|sp|C1DFV8|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
          Length = 168

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++PIE ++  I  LID+M E MY+  GIGLAA Q+ V  RLVV
Sbjct: 1   MAILTILEFPDPRLRTIAKPIETVDDGIRRLIDDMFETMYAAPGIGLAATQVNVHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +   P VFINP+    +++   YQEGCLS+P +  +V R   + +R +D + Q
Sbjct: 61  MDLSEDKNE--PRVFINPEFEALTEELEPYQEGCLSVPGFYENVDRPQKVRIRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + 
Sbjct: 119 PFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166


>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
 gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
          Length = 168

 Score =  158 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D + +
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|254282388|ref|ZP_04957356.1| peptide deformylase [gamma proteobacterium NOR51-B]
 gi|219678591|gb|EED34940.1| peptide deformylase [gamma proteobacterium NOR51-B]
          Length = 168

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 100/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR  ++P+ +++  I  LID+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILPILEFPDPRLRTRAKPVTEVDQRIRRLIDDMLETMYDAPGIGLAASQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P VFINP++         Y EGCLS+P +   V R + I V  +D    
Sbjct: 61  IDVSENRDE--PRVFINPEVTVIDKTLGSYDEGCLSVPGFFETVNRPSSIEVTALDREGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + R
Sbjct: 119 TFAEELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRSKLEKEHKRR 167


>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
 gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
          Length = 171

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 116/167 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDP+LR  S P+  I ++I  L+ +M E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTIRPLVILPDPVLRLGSEPVGPITAEIRTLVADMFETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       ++  VFINP+I+  S++  VY EGCLSIPDY A+V+R   + V++ D +  
Sbjct: 61  IDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGCLSIPDYYAEVERPDRVRVKFRDLDGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLL+TC+QHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 EREIEADGLLSTCIQHEIDHLNGVLFIDHLSKLKRDRVIKKFTKAAK 167


>gi|23009516|ref|ZP_00050535.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 171

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 86/167 (51%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+E +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVEAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVPKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDETAKNPTVYLNPEIVWASEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK SK  +
Sbjct: 121 TVEREADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFSKAAK 167


>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
 gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
           caulinodans ORS 571]
          Length = 172

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/167 (52%), Positives = 119/167 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I P+P LR++S P+ +I+ +I  L  +MLE MY   GIGLAA+Q+GV  R++ 
Sbjct: 1   MAILPILIIPEPQLRQISAPVPRIDKEIEKLAADMLETMYDAPGIGLAAIQVGVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      KNP+V INP++++ S++ S Y EGCLSIP+Y  +V+R A +TVRY D    
Sbjct: 61  IDIAREDAPKNPIVLINPEVVSASEETSFYNEGCLSIPEYYEEVERPAQVTVRYQDLKGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I ADGLLATCLQHE+DHLNG+LFIDHLSRLKR+ + KK +K  +
Sbjct: 121 THEIAADGLLATCLQHEIDHLNGVLFIDHLSRLKRERVIKKFTKAAR 167


>gi|15887717|ref|NP_353398.1| peptide deformylase [Agrobacterium tumefaciens str. C58]
 gi|23396541|sp|Q8UID1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium tumefaciens str. C58]
          Length = 170

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 96/169 (56%), Positives = 131/169 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+ IE+++++++ L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TV+Y+  + +
Sbjct: 61  IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q + ADGLLATCLQHE+DHLNG+LFIDH+SRLKRDM+ KK +K  + +
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAK 169


>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
 gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
           binds Zn(II)) [Acinetobacter sp. ADP1]
          Length = 174

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR +++P+EK+  +I  L  +MLE MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSFPDARLRTIAKPVEKVTDEIRQLAADMLETMYEAPGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +  PMVFINPKI   +++   Y+EGCLS+P     V R++ + +  ++ N +
Sbjct: 61  MDLSEE--KDQPMVFINPKITPLTEETQPYEEGCLSVPQIYDKVNRTSRVKIEAINLNDE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I ADGLLA C+QHE+DHLNG LF+D+LS LKR    +K+ K+V+ R+
Sbjct: 119 AFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLKRQRAREKVEKVVRQRE 168


>gi|325291800|ref|YP_004277664.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
 gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
           H13-3]
          Length = 170

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 100/169 (59%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ SRPIE+++++++ L D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKPLIILPDPVLRQQSRPIEQVDAEVLRLADDMLETMYDAPGIGLAAIQVGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+I+  SDD S Y+EGCLSIPDY A+V+R A +TVRY+D + +
Sbjct: 61  IDVSREDEEKKPVVFINPEILRVSDDVSAYEEGCLSIPDYYAEVERPASLTVRYVDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           HQ++ ADGLLATCLQHE+DHLNGILFIDH+SRLKR+M+ KK +K  + +
Sbjct: 121 HQMVDADGLLATCLQHEIDHLNGILFIDHISRLKREMVIKKFTKAARAK 169


>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
 gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
          Length = 168

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++P+ +++  I  LI +M + M    GIGLAA QI V  R++V
Sbjct: 1   MAILKILEFPDPRLRTVAKPVAEVDETIKRLIADMFDTMKDAQGIGLAATQIDVHLRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L +      P VFINP+I    +    Y+EGCLS+P +   V R A + +R +D   +
Sbjct: 61  MNLGEDDIG--PRVFINPEIEPLDESVDPYEEGCLSVPGFYEKVDRPAHVVIRALDGEGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A GLLA C+QHE+DHL G LF+D+LS  KR  I KK+ K+ + 
Sbjct: 119 AFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFKRQRIRKKLEKIHRQ 166


>gi|326388512|ref|ZP_08210106.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206977|gb|EGD57800.1| peptide deformylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 189

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 74/187 (39%), Positives = 102/187 (54%), Gaps = 20/187 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS+P+E  + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKQVSKPVEVFDDELKTLVADMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ--------------------EGCLSIPDY 100
           IDLQ       P V         +   +  +                    EGCLS+P+ 
Sbjct: 61  IDLQPDDPDAEPEVCTAHGGHHHTHQPTKKEPLVFINPVLSSLSEDLAVYNEGCLSVPEI 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
            A+V R + I  R+ D +        D LLATCLQHE+DHL GILFIDHLSRLKR M  K
Sbjct: 121 YAEVTRPSRIHARWQDLDGNVHEAEIDDLLATCLQHEMDHLEGILFIDHLSRLKRQMALK 180

Query: 161 KMSKLVQ 167
           K+ KL +
Sbjct: 181 KLEKLRR 187


>gi|254483306|ref|ZP_05096537.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
 gi|214036401|gb|EEB77077.1| peptide deformylase [marine gamma proteobacterium HTCC2148]
          Length = 168

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V+ P+  +      L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLEILEFPDPRLRTVAAPVNSVTDKHRQLLDDMLETMYAAPGIGLAATQVNVHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  +   P+VFINP++     +   Y EGCLS+P Y   V R   I V+ +  + +
Sbjct: 61  IDLSEKQND--PLVFINPEVEILDKELGEYDEGCLSVPGYYETVNRPQRIAVKALGRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + R
Sbjct: 119 PFSSEIEGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKDQRRR 167


>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
 gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
          Length = 173

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR V++PIE+++  +   ID+M E MY + G+GLAA Q+ V  RL V
Sbjct: 1   MTKLTVLKYPDERLRTVAQPIEQVDDALRATIDDMFETMYESQGVGLAATQVDVHQRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  ++ +            IT S+     +EGCLS P+  A V+R+  ITV+ +D N +
Sbjct: 61  ADCSENQNEPL---VFINPEITRSEGHFTNEEGCLSFPNVFAKVERAESITVQALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L++
Sbjct: 118 RFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLQE 167


>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
 gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
          Length = 187

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 106/169 (62%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++   P+ +I  +I  L D+ML  MY   GIGLA  Q+  + R++ 
Sbjct: 14  MTIRPILIHPDPRLKKTVDPVAEITDEIRQLADDMLATMYDAPGIGLAGPQVAAMTRIIT 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        +PMV INP+I+  S++ + Y+EGCLSIP+  ADV+R A + VR+      
Sbjct: 74  MDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGCLSIPEMYADVERPAEVEVRWTTLEGG 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 134 DASARWGGLHATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRER 182


>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 167

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV+
Sbjct: 1   AILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +   
Sbjct: 61  DLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 166


>gi|220933382|ref|YP_002512281.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|254767610|sp|B8GU11|DEF_THISH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|219994692|gb|ACL71294.1| peptide deformylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 178

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 112/168 (66%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+ + P++K++ +I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAKLEILHFPDPRLRKRAVPVDKVDDEIRRLVDDMFETMYDAPGIGLAATQVNVQRQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  +  P+VFINP+I+    +  + +  CLS+P Y   V+R+  + VR +D N +
Sbjct: 61  IDVSENNDQ--PLVFINPEILDRVGEEEMQEG-CLSVPGYFETVRRADRVRVRALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ KL + 
Sbjct: 118 PFELETDGLLAVCIQHEMDHLDGKLFVDYLSPLKRNRIQKKLEKLTRQ 165


>gi|330813514|ref|YP_004357753.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486609|gb|AEA81014.1| peptide deformylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 170

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 118/170 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PDPILR+ S P++++N +I  L+ NMLE MY+  GIGLAAVQ+G+L R++V
Sbjct: 1   MSILTIVKEPDPILRKKSLPVKEVNGEIKKLMKNMLETMYAAPGIGLAAVQVGILKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+ F+NPKI+  SD     QEGCLSIP +  ++KR     V+Y+D + +
Sbjct: 61  IDISGETSLKKPIFFVNPKIVWKSDILETKQEGCLSIPGHFGNIKRPEACHVKYLDYSGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGLLATC+QHE+DH NG LFID+LS+LK+  I KK++K  + ++
Sbjct: 121 EKTLKADGLLATCIQHEIDHCNGTLFIDYLSKLKKAFIIKKLTKAQKNQE 170


>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
          Length = 171

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 98/169 (57%), Positives = 134/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR++S+PIE++++D+  L D+MLE MY   GIGLAA+QIGV  R++V
Sbjct: 1   MTIKPLIILPDPILRQLSQPIERMDADLQRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P VFINP+I+  SD+ SVY+EGCLSIPDY A+V+R A ++V+Y+D N +
Sbjct: 61  IDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIPDYYAEVERPAVVSVKYLDRNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQMVEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 170/170 (100%), Positives = 170/170 (100%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV
Sbjct: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ
Sbjct: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD
Sbjct: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170


>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
 gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
           Complexed With Antibiotic Actinonin
          Length = 171

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    ++D   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 61  MDLSEDKSE--PRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167


>gi|49474898|ref|YP_032939.1| polypeptide deformylase [Bartonella henselae str. Houston-1]
 gi|81696215|sp|Q6G5F0|DEF_BARHE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49237703|emb|CAF26892.1| Polypeptide deformylase [Bartonella henselae str. Houston-1]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 126/170 (74%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PDPILR +S+P+E I+S +  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPMRPLVIVPDPILREISKPVEYIDSAVQKLADDMLETMYHAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+  +  +KNP+V INP+++  SD+ ++Y+EGCLSIP+Y A+V+R   + VRY +   +
Sbjct: 61  LDVSRNDEQKNPLVIINPEVLWLSDERNIYKEGCLSIPEYFAEVERPKRLCVRYQNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFID+LS++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADDLLATCLQHEIDHLNGRLFIDYLSKIKRDMVIRKFKKRAKEKN 170


>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
 gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
           AMB-1]
          Length = 190

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +ML+ MY   GIGLAA QIGVL R++V
Sbjct: 21  MAVLPILTAPDPVLKSKSKPVATVDDRIRTLLADMLDTMYHAPGIGLAAPQIGVLERVIV 80

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+I+  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 81  MDIGRKEEDRAPIRMVNPEIVWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 140

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I ADGLLAT +QHE+DHL+GILFIDHLS LKR+MI +K+ K  +  +
Sbjct: 141 KQEILADGLLATVVQHEMDHLDGILFIDHLSSLKRNMILRKLLKARKESE 190


>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
 gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
          Length = 176

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+P++I PDP L+  + P+ +I  ++  L D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 4   MTKRPILIHPDPRLKTAATPVGEITDEVRRLADDMLETMYDAPGIGLAAPQVGVLKRVLV 63

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  +D      P+V  +P+I+  SD  +VY+EGCLSIPD  A+V+R A + VR+ D   
Sbjct: 64  MDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEGCLSIPDQYAEVERPAEVEVRWTDLEG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + +
Sbjct: 124 GARRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKREK 173


>gi|53803080|ref|YP_115237.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
 gi|53756841|gb|AAU91132.1| polypeptide deformylase [Methylococcus capsulatus str. Bath]
          Length = 178

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ + P+E  +  +   +D+M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MTILSILEFPDERLRKKAAPVEVFDDTLRRTVDDMFETMYAAPGVGLAATQVNVHKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+++    +  + +EGCLS+P     V R+  + VR  D N +
Sbjct: 61  IDVSEEKDA--PLCLINPELLEKQGNGEM-EEGCLSVPGIFEKVPRAESVRVRAQDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHE+DHL G LF+DHLS LKR M  KK+ K  +LR+
Sbjct: 118 FFEMSAEGLLAVCIQHEMDHLEGKLFLDHLSTLKRQMARKKLQKERRLRE 167


>gi|167950832|ref|ZP_02537906.1| peptide deformylase [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 194

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ +++  I  L+D+M E MY   GIGLAA Q+ V  +++V
Sbjct: 19  MAILDILHFPDSRLRNKAKPVSQVDDAIRKLVDDMFETMYEAPGIGLAATQVNVAKQIIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +   +  P+  INP+I++   +  + +  CLS+P     VKR+A I+VR +D +  
Sbjct: 79  IDLSEE--KNQPLCLINPEILSKEGEEKMDEG-CLSVPGIYESVKRAARISVRALDRDGA 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHLNG LF+D+LS LKR  I K++ K  +LR
Sbjct: 136 PFELETEGLLAVCIQHEIDHLNGKLFVDYLSSLKRQRIRKRLEKESRLR 184


>gi|84685501|ref|ZP_01013399.1| peptide deformylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84666658|gb|EAQ13130.1| peptide deformylase [Rhodobacterales bacterium HTCC2654]
          Length = 173

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP L++ +  +  +  +++ L D+MLE MY   GIGLAA Q+GVL RL+V
Sbjct: 1   MALKPILIHPDPRLKKEAEKVRDVTDELLTLADDMLETMYDAPGIGLAAPQVGVLQRLIV 60

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D   D +    P+V  NP++I  SDD +VY+EGCLSIPD  A+V R A + VR+++   
Sbjct: 61  LDCIKDESAEPQPLVMFNPEVILSSDDTNVYEEGCLSIPDQYAEVTRPAAVKVRWLNRAG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    +GL ATC+QHE+DHLNG LFID+LS +KR MIT+K  KL + R
Sbjct: 121 EEQERDFEGLWATCVQHEIDHLNGKLFIDYLSPMKRQMITRKSQKLKRER 170


>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
 gi|259645186|sp|C5BKQ0|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
          Length = 168

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPD  LR V++P+E+++  +  +ID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MALLPILEFPDARLRTVAKPVEQVDERVRAIIDDMFETMYDAPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P+VFINP+I    +    Y+EGCLS+P +  +V R   + V  ++ + +
Sbjct: 61  IDISENHDE--PLVFINPRIDVLDETLFDYEEGCLSVPGFYEEVTRPRHVRVTALNRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++  +GLLA C+QHE+DHL G LF+D++S +KR  I KK+ K  + R
Sbjct: 119 EFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIKRQRIRKKLEKQHKER 167


>gi|119503586|ref|ZP_01625669.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
 gi|119460648|gb|EAW41740.1| peptide deformylase [marine gamma proteobacterium HTCC2080]
          Length = 168

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR ++ P+  +++ +  L D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAILSILEFPDPRLRTIAVPVTHVDARVQRLTDDMLETMYDAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  +  P +FINP +         Y EGCLS+P +   ++R   I V   D + +
Sbjct: 61  IDISEN--KDQPQIFINPVVEALDQTLGEYDEGCLSVPGFYETIRRPERIRVTAKDRDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 DGLLA CLQHE+DHL G LF+D+LS LKR  I  K+ K  + RD
Sbjct: 119 LFSRELDGLLAICLQHEIDHLEGKLFVDYLSPLKRQRIRGKLEKAQRQRD 168


>gi|144898454|emb|CAM75318.1| peptide deformylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 170

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP L++ +  +  +++ I  L+D+MLE MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAVLSILTAPDPRLKQKAAVVADVDASIRTLMDDMLETMYAAPGIGLAAPQVAVGKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      + P+  +NP+I+  SDD + Y+EGCLS+P++ A V R   I VRY D    
Sbjct: 61  ADIGRSEDDRQPVRMVNPEIVWVSDDDNTYEEGCLSVPEHYAAVVRPRAIRVRYRDETGT 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           HQ I ADGLLAT LQHE+DHL+GILFIDHLS LKR+MI +K+ K  + 
Sbjct: 121 HQEIDADGLLATVLQHEMDHLDGILFIDHLSSLKRNMILRKLLKAKKE 168


>gi|91774543|ref|YP_544299.1| peptide deformylase [Methylobacillus flagellatus KT]
 gi|91708530|gb|ABE48458.1| peptide deformylase [Methylobacillus flagellatus KT]
          Length = 167

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V+ P+E++N DI  L+ +M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTYPDPRLHKVAAPVEEVNDDIRQLVRDMAETMYAAPGIGLAATQVDVHKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +               I        Y+EGCLS+P     V R+A +TV  +D + +
Sbjct: 61  IDLSEDKSAL---QVFINPKIVSQCGSQEYEEGCLSVPGIYEPVTRAAEVTVEALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK+  I  K+ K  + R
Sbjct: 118 PFTLKADGLLAVCIQHEIDHLLGKVFVEYLSSLKQTRIKNKLKKRQRER 166


>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 172

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I P+P LR +S  +EKI+S++  L+++M + MY   GIGLAA+Q+GV  R+V 
Sbjct: 1   MATRPILIIPEPKLRTLSASVEKIDSEVKKLVEDMFDTMYDAPGIGLAAIQVGVQRRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+  INP+II  S++ SVY EGCLSIP+Y  +V+R A +TVR+ D   Q
Sbjct: 61  IDVAREGEAKKPIALINPEIIAASEETSVYAEGCLSIPEYYEEVERPARVTVRFQDIEGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + ADGL ATC+QHE+DHLNG+LFIDH+S+LKRD + KK +KL + +D
Sbjct: 121 VREVAADGLFATCVQHEIDHLNGVLFIDHISKLKRDRVIKKFTKLARHKD 170


>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
 gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
          Length = 167

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP LR +++P+E++  DI  LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MIREILEYPDPRLRTIAKPVEEVTDDIRTLIDDMFETMYDARGIGLAATQVDVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINPK+     +    QEGCLS+P +  DVKR     +   D + + 
Sbjct: 61  DLSEDKTE--PRVFINPKVEVLDGELEAMQEGCLSVPGFYEDVKRIEHCRITAKDRDGKE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++ A+GLLA C+QHE+DHLNG LF+D+LS+LKR+ I KK+ KL + 
Sbjct: 119 FVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLKRNRIRKKLEKLHKQ 165


>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Oceanospirillum sp. MED92]
 gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
          Length = 171

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP LR ++ P+ ++  +I   ID+M E MY+  GIGLAA Q+ +  R+V 
Sbjct: 1   MAKLTILEYPDPRLRTIAEPVSEVTDEIRAQIDDMFETMYAAPGIGLAATQVNIHKRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D  +   P+V INP+     ++   YQEGCLS+P +  DVKR   I ++ +D N +
Sbjct: 61  MDISDDQNE--PLVLINPEFEVIDEELHKYQEGCLSVPGFYEDVKRPQKIKLKALDYNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A+GLLA C+QHELDHLNG LF+D+LS LKR+ I  K+ K+ + ++
Sbjct: 119 AYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLKRNRIKGKLEKIHKQQE 168


>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
 gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
          Length = 172

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L++V+ P+  I  ++    D+MLE MY   GIGLA  QIG++ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKVAEPVADITDELRTTADDMLETMYDAPGIGLAGPQIGLMARLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ SVY+EGCLSIPD  A+V+R A +TV ++D +  
Sbjct: 61  DCVKEETLPPRPLVMFNPRVVASSDEKSVYEEGCLSIPDQYAEVERPAEVTVEWLDRDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID++S +KR MIT+KM KL + R
Sbjct: 121 LQEESFDGLWATCVQHEIDHLNGKLFIDYISPIKRQMITRKMQKLKRER 169


>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
 gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
          Length = 171

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 97/169 (57%), Positives = 135/169 (79%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDP+LR+ S+PIE+++++I+ L D+MLE MY   GIGLAAVQIGV  R++V
Sbjct: 1   MTIKPLIILPDPLLRQASKPIERVDTEILRLADDMLETMYDAPGIGLAAVQIGVARRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+++  SD+ SVY+EGCLSIPDY A+V+R A +TV+++D + +
Sbjct: 61  IDVAREGEDKQPLVFINPEVVASSDERSVYEEGCLSIPDYYAEVERPARVTVKHIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q+I ADGLLATCLQHE+DHLNG+LFID++SRLKR+M+ KK +K  + +
Sbjct: 121 EQLIEADGLLATCLQHEIDHLNGVLFIDYISRLKREMVIKKFTKAAKSK 169


>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
 gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
          Length = 167

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+  +  +I  LID+M E MY   GIGLAA Q+ V  ++VV+
Sbjct: 1   MILNILEYPDPRLRTLAKPVTTVTDEIRTLIDDMFETMYDAAGIGLAASQVNVHQQIVVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINPKI     D    QEGCLS+P +  +V+R     ++ +D N + 
Sbjct: 61  DLSEDNSE--PKVFINPKIGILDGDLEAMQEGCLSVPGFYEEVERIEHCLIKALDRNGEA 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLQK 164


>gi|83594679|ref|YP_428431.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
 gi|83577593|gb|ABC24144.1| peptide deformylase [Rhodospirillum rubrum ATCC 11170]
          Length = 172

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP L + + P+E ++  I  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MALLPILTAPDPRLTKKALPVETVDVSIRKLMDDMLETMYLAPGIGLAAPQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         PM   NP+II  S+D   Y+EGCLS+P+    V R   + VRY+D + +
Sbjct: 61  LDPAREDEAPRPMRLANPEIIWSSEDTKPYEEGCLSVPEQYDTVVRPDRVRVRYLDPDNE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I ADGLLA  LQHE+DHL+GILF+D+LS LKR+M+ +K+ K+ +
Sbjct: 121 IREIDADGLLAVILQHEIDHLDGILFVDYLSSLKRNMMLRKLRKMKR 167


>gi|23016537|ref|ZP_00056292.1| COG0242: N-formylmethionyl-tRNA deformylase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 170

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 117/170 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+  S+P+  ++  I  L+ +MLE MY   GIGLAA QIGVL R++V
Sbjct: 1   MAVLPILTAPDPVLKSKSKPVAAVDDRIRALLADMLETMYHAPGIGLAAPQIGVLERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      + P+  +NP+II  SD+ + Y+EGCLS+P++ ++V R A + VRY+D    
Sbjct: 61  MDIGRKEEDRAPIRMVNPEIIWASDEDNTYEEGCLSVPEHYSNVVRPASVKVRYLDETGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q + A+GLLAT +QHE+DHL+G+LFIDHLS LKR+MI +K+ K  +  +
Sbjct: 121 KQELLAEGLLATVVQHEMDHLDGVLFIDHLSSLKRNMILRKLLKARKEAE 170


>gi|307943158|ref|ZP_07658503.1| peptide deformylase [Roseibium sp. TrichSKD4]
 gi|307773954|gb|EFO33170.1| peptide deformylase [Roseibium sp. TrichSKD4]
          Length = 196

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 93/168 (55%), Positives = 122/168 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++  PD  LR V  P+E +++DI  L D+M E MY+  GIGLAA QIGVL RL V
Sbjct: 23  MTKRSILTIPDAQLREVCAPVETVDADIKALADDMFETMYAAPGIGLAASQIGVLKRLFV 82

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      K+PMVFINPKI+  S+D SVYQEGCLSIPDY  D++R A + V++++ +  
Sbjct: 83  LDVAKEDAPKDPMVFINPKIVWSSEDTSVYQEGCLSIPDYYEDIERPAKVRVQFLNRDGA 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLATC+QHELDHL G LFID+LS+LKRD + KK +KL +L
Sbjct: 143 EQEMEADGLLATCIQHELDHLYGRLFIDYLSKLKRDRVMKKFNKLAKL 190


>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
 gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
          Length = 175

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P++ ++  +  L+D+M+E MY+ DGIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILTVPDPRLKLVSKPVDAVDDALRALMDDMVETMYAADGIGLAAIQVGVDKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL D  +   P  ++NP I   ++D   YQEGCLS+PD    V+R   + V Y+D + +
Sbjct: 61  MDLSDERND--PRYYVNPVITPLTEDLKPYQEGCLSVPDVFDSVERPKKVKVEYLDYDGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   A+ L A C+QHE+DHL G++FID+LSRLKRD   KK+ KLV+ R
Sbjct: 119 KREEIAEDLFAVCIQHEMDHLEGVVFIDYLSRLKRDRAVKKVQKLVKQR 167


>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
 gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
          Length = 166

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ FPD  LR V++P+ ++      +ID+M E MY+  GIGLAA Q+ +  +++V
Sbjct: 1   MAQLPILEFPDARLRTVAKPVAEVTDATRRIIDDMFETMYAAPGIGLAATQVNIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP I    ++   Y EGCLS+P +   V+R   I V  +D N  
Sbjct: 61  MDLSEDKSE--PQVFINPSITVQGEELDSYDEGCLSVPGFYESVERPKSIKVEAIDRNGS 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II  +GLLA C+QHE+DHLNG LF+D+LS +KR  I KK+ K  + 
Sbjct: 119 PFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMKRQRIRKKLEKQQRG 166


>gi|254456015|ref|ZP_05069444.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083017|gb|EDZ60443.1| peptide deformylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 172

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 78/166 (46%), Positives = 117/166 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+P+LR+VS+P++++  +   L+D+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MTIKTIITEPNPLLRQVSKPVDQVGKEEQILMDDMLETMYDAPGIGLAAIQVGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I       S Y+EGCLS+P+  A++ R +   V Y+D + +
Sbjct: 61  MDISKEEGKKEPRYFVNPVIKNKDSIKSTYEEGCLSVPNQFAEIDRPSKCEVEYLDYHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SKL 
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKLK 166


>gi|254491036|ref|ZP_05104217.1| peptide deformylase [Methylophaga thiooxidans DMS010]
 gi|224463549|gb|EEF79817.1| peptide deformylase [Methylophaga thiooxydans DMS010]
          Length = 167

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ + PI  +N  I  L D+MLE MY   GIGLAA Q+ +  R++V
Sbjct: 1   MAILNILHFPDPRLRKKAEPITDVNDKIRQLADDMLETMYDAPGIGLAATQVNIQKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I  ++    ++EGCLS+P+    V R+  + ++ ++   +
Sbjct: 61  IDISEDKSDPL---VLINPEIVAAEGEREFEEGCLSVPEAYEAVIRADKVKIKAVNLQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGLLATC+QHE+DHL+G LF+D+LS LKR  I K++ K  + +
Sbjct: 118 DFEFTTDGLLATCVQHEIDHLDGKLFVDYLSNLKRQRIKKRLEKHQKQK 166


>gi|254477024|ref|ZP_05090410.1| peptide deformylase [Ruegeria sp. R11]
 gi|214031267|gb|EEB72102.1| peptide deformylase [Ruegeria sp. R11]
          Length = 189

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  +   +  L D+MLE MY+  G+GLAA QIGVL RL+V+
Sbjct: 18  MKRPILIHPDPRLKKVCAEVPDLTDAMRTLADDMLETMYAAPGVGLAAPQIGVLDRLIVL 77

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NPKI++ SD+ +VY+EGCLSIPD  A+V R   + V +M+ +  
Sbjct: 78  DCAKEDEESPRPLVMFNPKIVSASDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMNRDGN 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 138 AARETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 186


>gi|332185304|ref|ZP_08387053.1| peptide deformylase [Sphingomonas sp. S17]
 gi|332015028|gb|EGI57084.1| peptide deformylase [Sphingomonas sp. S17]
          Length = 173

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 86/173 (49%), Positives = 121/173 (69%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP LR VS+P+E ++  +  L+ +M+E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPIVEVPDPRLRLVSKPVEAVDDSVRQLVTDMIETMYDAHGIGLAAIQVGVDKRVLV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         KNP  +INP+I++ S++ S Y EGCLSIP+  A+VKR A   V+++
Sbjct: 61  IDLQEEEDEEGKPVKNPKAYINPEILSVSEELSTYNEGCLSIPEQYAEVKRPARCQVKWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D   +      DGLLATC+QHE+DHLNG+LFIDH+SRLKRDM+ +K+SK+ + 
Sbjct: 121 DEKGEAHEAEFDGLLATCMQHEMDHLNGVLFIDHVSRLKRDMLMRKLSKIRKG 173


>gi|226327658|ref|ZP_03803176.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
 gi|225204184|gb|EEG86538.1| hypothetical protein PROPEN_01530 [Proteus penneri ATCC 35198]
          Length = 172

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/168 (50%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   PL+ FPD  LRRV+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLPLLRFPDERLRRVAVPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  P+  INP+II+  D+     +GCLSIPD  A  +R  F+ VR +D N  
Sbjct: 61  IDVSEN--RDQPIALINPEIISTEDEVMDMMDGCLSIPDSFAPTERYRFLKVRALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  L A C+QHELDHL+G LFIDHLS LKR  I KK  KL +L
Sbjct: 119 EIELEASDLFAGCIQHELDHLDGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|257456003|ref|ZP_05621212.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
 gi|257446592|gb|EEV21626.1| peptide deformylase [Enhydrobacter aerosaccus SK60]
          Length = 176

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR +++P+   + ++  LID+M E MY+  GIGLAA Q+    +LVV
Sbjct: 1   MTLRTILNYPDPRLRTLAKPVTHFDDELKTLIDDMFETMYAAKGIGLAATQVDEHIQLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   +D+   Y+EGCLS+P+Y   V R   + +  +D    
Sbjct: 61  MDLSED--GSQPRVFINPIVTPLADELYSYEEGCLSVPEYYDKVDRPKHVKIEALDAQGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  A GLLA C+QHE+DHLNG +F+D+LS+LK+D    K+ K+V+ R+
Sbjct: 119 PFVEEAQGLLAVCIQHEIDHLNGKIFVDYLSKLKQDRARDKVRKVVKQRE 168


>gi|163851063|ref|YP_001639106.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218529893|ref|YP_002420709.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240138197|ref|YP_002962669.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254560757|ref|YP_003067852.1| peptide deformylase [Methylobacterium extorquens DM4]
 gi|163662668|gb|ABY30035.1| peptide deformylase [Methylobacterium extorquens PA1]
 gi|218522196|gb|ACK82781.1| peptide deformylase [Methylobacterium chloromethanicum CM4]
 gi|240008166|gb|ACS39392.1| peptide deformylase [Methylobacterium extorquens AM1]
 gi|254268035|emb|CAX23906.1| peptide deformylase [Methylobacterium extorquens DM4]
          Length = 171

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLTSEPVAAVTDEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM+ + Q
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWVSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMNLDGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 IVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
 gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
          Length = 174

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++V+ P+  +  ++  L DNML  MY   GIGLAA Q+GV  RL+V+
Sbjct: 1   MKLPILIHPDPRLKKVAAPVPDVTDELRALADNMLSTMYDAPGIGLAAPQVGVGQRLIVL 60

Query: 62  DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D +        P+   NP++I  SD+ + Y EGCLSIPD  ADV R   +TVR+MD N  
Sbjct: 61  DCEKGDDVTPRPLAMFNPEVIASSDEMNTYDEGCLSIPDIYADVTRPEAVTVRWMDVNGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL G LFID+LS LKR +IT+KM KL + R
Sbjct: 121 EQEETFDGLWATCVQHEIDHLEGKLFIDYLSGLKRQLITRKMVKLKRDR 169


>gi|21233177|ref|NP_639094.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770117|ref|YP_244879.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188993325|ref|YP_001905335.1| peptide deformylase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|39931165|sp|Q8P4F9|DEF2_XANCP RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575449|gb|AAY50859.1| polypeptide deformylase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167735085|emb|CAP53297.1| Peptide deformylase [Xanthomonas campestris pv. campestris]
          Length = 170

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E ++     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +      P VFINP+I+T   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSEEKDA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++KL +
Sbjct: 118 QGQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRK 167


>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
 gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
          Length = 212

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 45  MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 104

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 105 MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 162

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 163 PFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 211


>gi|126733797|ref|ZP_01749544.1| Peptide deformylase [Roseobacter sp. CCS2]
 gi|126716663|gb|EBA13527.1| Peptide deformylase [Roseobacter sp. CCS2]
          Length = 173

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PDP L++V+ P+  +N D+  L D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRNILIHPDPRLKKVATPVPSVNDDLRRLADDMLETMYDAPGIGLAAPQIAVMNRMLV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV INP+++  S++ +VY+EGCLSIP+  A+V+R   + V + + + 
Sbjct: 61  MDCAKEDDATPEPMVLINPEVVWTSEEQNVYEEGCLSIPEQYAEVERPTEVEVTWTNLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q +    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 QAKRERFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|260432735|ref|ZP_05786706.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416563|gb|EEX09822.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 172

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P++ ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVDDLSDELRALADDMLETMYDAPGIGLAAPQIGVLERLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II+ SD+ SVY+EGCLSIPD  A+V R A + V +MD N +
Sbjct: 61  DCVKEEGATPRPLVMFNPEIISASDETSVYEEGCLSIPDQFAEVTRPAEVEVAWMDQNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + 
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|294012439|ref|YP_003545899.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
 gi|292675769|dbj|BAI97287.1| N-formylmethionyl-tRNA deformylase [Sphingobium japonicum UT26S]
          Length = 176

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I+ D+  LID+M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDDDLQRLIDDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEGAPPVKKPMVFINPEILDGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|49473752|ref|YP_031794.1| polypeptide deformylase [Bartonella quintana str. Toulouse]
 gi|81696103|sp|Q6G1G6|DEF_BARQU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49239255|emb|CAF25576.1| Polypeptide deformylase [Bartonella quintana str. Toulouse]
          Length = 176

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/170 (51%), Positives = 124/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR VS+P+E ++S I  L D+MLE MY   G+GLAA+QIG+  R++V
Sbjct: 1   MPIKPLIILPDPILREVSKPVEHVDSTIQKLADDMLETMYDAQGVGLAAIQIGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+  +  +KNP+V INP+I+  SD+ ++ +EGCLSIP+Y  +++R   + VRY D   +
Sbjct: 61  IDVSRNETQKNPLVIINPEILWLSDERNICKEGCLSIPEYYTEIERPKRLCVRYQDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QTEIEADHLLATCLQHEIDHLNGRLFIDHISKIKRDMVIRKFKKRAKEKN 170


>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
 gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
          Length = 168

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+   +  +  LID+M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAILNILEFPDPRLRTIAKPVTVFDDALRQLIDDMFETMYEAPGIGLAATQVNVHQQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP +   +DD   YQEGCLS+P +  +V R   + V+  D + +
Sbjct: 61  MDLSEDRSE--PRVFINPTVEELTDDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE DHLNG LF+D+LS+LKRD I KK+ K  + +
Sbjct: 119 PFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQ 167


>gi|77917861|ref|YP_355676.1| polypeptide deformylase [Pelobacter carbinolicus DSM 2380]
 gi|77543944|gb|ABA87506.1| peptide deformylase [Pelobacter carbinolicus DSM 2380]
          Length = 171

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L+  S PI  I  +I  L  +M E MY+  G+GLAA Q+G+  +LVV
Sbjct: 1   MAILPIRHYPDPVLKNKSEPILTITEEIKTLAADMAETMYAAPGVGLAAPQVGINKKLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +  +      I    D F   +EGCLS+P Y   +KR++ + VRY +   Q
Sbjct: 61  MDCAPKENPELIVAINPEIIEREGDSFE--EEGCLSVPGYYCRIKRNSHVKVRYQNLEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  K+ + ++
Sbjct: 119 TVEREATGLLAIAFQHEIDHLHGLLFVDHLSSLKKNMFRKKYQKIQRQQE 168


>gi|149375618|ref|ZP_01893387.1| polypeptide deformylase [Marinobacter algicola DG893]
 gi|149360020|gb|EDM48475.1| polypeptide deformylase [Marinobacter algicola DG893]
          Length = 167

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P++++  +   LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILDILEYPDPRLRTIAKPVDEVTDETRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP++     +    QEGCLS+P +  DV R     +R +  + + 
Sbjct: 61  DLSEDKSE--PRVFINPEVEVLEGELEEMQEGCLSVPGFYEDVSRIEHCMIRAIGRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I A GLLA C+QHE+DHLNG LF+D+LS LKR  I KK+ KL +
Sbjct: 119 FEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLKRTRIRKKLEKLHK 164


>gi|300024230|ref|YP_003756841.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526051|gb|ADJ24520.1| peptide deformylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 171

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/168 (47%), Positives = 118/168 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+LR++S P+E+++  ++ L+D+MLE MY   GIGLAAVQ+GVL R++V
Sbjct: 1   MAILPIITIPDPVLRKISDPVERVDDAVVKLMDDMLETMYDAPGIGLAAVQVGVLKRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +     NP+   NP+++       +++EGCLSIPD   +++R A +TVRY+D + +
Sbjct: 61  VDAAEDGAPHNPIAMANPELVALGSTTRLHEEGCLSIPDVHVEIERPASVTVRYIDRHGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A+GLLAT +QHELDHL+G L ID LSRLKRDM+ +K  K V+ 
Sbjct: 121 EQELAAEGLLATAVQHELDHLDGQLIIDFLSRLKRDMVIRKFKKQVRE 168


>gi|91762408|ref|ZP_01264373.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718210|gb|EAS84860.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 172

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 120/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKPILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPLIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|288959246|ref|YP_003449587.1| peptide deformylase [Azospirillum sp. B510]
 gi|288911554|dbj|BAI73043.1| peptide deformylase [Azospirillum sp. B510]
          Length = 170

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/167 (46%), Positives = 123/167 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P+++ P PIL+R ++P+ ++++ ++ L+D+M+E MY   GIGLAA Q+GVL R++V
Sbjct: 1   MARLPILVAPHPILKRKAQPVAEVDARVVKLMDDMVETMYDAAGIGLAAPQVGVLDRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +     NP+   NP+II  S+D +V +EGCLS+P+  A+V R   + VRY+D   Q
Sbjct: 61  VDVHEKGEPPNPIRLANPEIIWSSEDKAVCEEGCLSVPEQYAEVTRPQRVRVRYLDERNQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q I A+G+LATCLQHE+DHLNG+LF+D+LS LKR+++ KK+ K+ +
Sbjct: 121 PQEIEAEGMLATCLQHEIDHLNGVLFVDYLSMLKRNILLKKVQKMQK 167


>gi|83642943|ref|YP_431378.1| peptide deformylase [Hahella chejuensis KCTC 2396]
 gi|123767556|sp|Q2SQX1|DEF_HAHCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|83630986|gb|ABC26953.1| peptide deformylase [Hahella chejuensis KCTC 2396]
          Length = 168

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR V++P++  ++ +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MSKLQILEFPDPRLRTVAKPVQTFDAALGQLIDDMFETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      PMVFINP I     D    QEGCLS+P +   V R   + +R  D N +
Sbjct: 61  IDVSEDKSE--PMVFINPDIEVLDGDPEEMQEGCLSVPGFYESVTRIPHVKIRAQDRNGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA CLQHE+DHLNG L++D+LS +KR  I KK+ K  ++R
Sbjct: 119 SYEMEARGLLAVCLQHEVDHLNGKLYVDYLSNVKRTRIRKKLEKQHKMR 167


>gi|188580852|ref|YP_001924297.1| peptide deformylase [Methylobacterium populi BJ001]
 gi|179344350|gb|ACB79762.1| peptide deformylase [Methylobacterium populi BJ001]
          Length = 171

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S P+  +  +I  L  +M+E MY   G+GLAA+QIGV  R+V 
Sbjct: 1   MTVRPLVILPDAQLRLISEPVGTVTEEIRTLARDMIETMYDAPGVGLAAIQIGVAKRVVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID     + KNP V++NP+I+  S++  VY EGCLSIP++  +V+R   + VRYM  + +
Sbjct: 61  IDTSKDENAKNPTVYLNPEIVWSSEEKRVYDEGCLSIPEFYGEVERPDRVRVRYMTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDHLS+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHEIDHLNGVLFIDHLSKLKRDRVMKKFTKAAK 167


>gi|92114984|ref|YP_574912.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
 gi|123387341|sp|Q1QTJ5|DEF_CHRSD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91798074|gb|ABE60213.1| peptide deformylase [Chromohalobacter salexigens DSM 3043]
          Length = 170

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPD  LR  + P+E ++ +   L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLTILEFPDERLRTKAAPVETVDDETRKLVDDMLETMYDAQGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D   R  P V INP+     D+    QEGCLSIP+Y A+V R+  ++++ +D +  
Sbjct: 61  MDVSDD--RSQPRVLINPEYTPLGDEREPMQEGCLSIPEYYAEVPRALRVSLKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +
Sbjct: 119 PYELEADGLLAHCIQHEYDHLEGVLFVDYLSPLKRDRVLKKMQKRHR 165


>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
          Length = 176

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/170 (54%), Positives = 123/170 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+P+E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKPVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHPKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLCMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|260752714|ref|YP_003225607.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552077|gb|ACV75023.1| peptide deformylase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 177

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/174 (47%), Positives = 114/174 (65%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I      +D   ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEDGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
 gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
          Length = 172

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I  D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRNILIHPDPRLKKVCAPVADITDDLRKLADDMLETMYDAPGIGLAAPQIGVLDRLIVV 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP++I  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEGETPRPLVMFNPQVIASSDEINVYEEGCLSIPDQYAEVTRPRTVDVTWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    D L ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + +
Sbjct: 121 LQQETFDDLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKREK 169


>gi|87200909|ref|YP_498166.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
 gi|123763380|sp|Q2G491|DEF_NOVAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|87136590|gb|ABD27332.1| peptide deformylase [Novosphingobium aromaticivorans DSM 12444]
          Length = 188

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/186 (45%), Positives = 120/186 (64%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L++VS P+EK + ++  L+++M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREIIEVPDPRLKQVSVPVEKFDDELKTLVEDMFETMYDAPGIGLAAIQVGVPLRVLV 60

Query: 61  IDLQDHAHR-------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                        K P VFINP+I+  S+++SVYQEGCLS+P+  
Sbjct: 61  IDLQPDDPDAEPVACDHDGHHHHHQPTKKEPRVFINPEILDPSEEYSVYQEGCLSVPEIY 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           A+V+R A I  R+ D + +      +GL+ATCLQHE+DHL G+LFIDHLSRLKR+M  KK
Sbjct: 121 AEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEMDHLEGVLFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LEKLRK 186


>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
 gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
          Length = 172

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 117/169 (69%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V  P+  I+ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRAILIHPDPRLKKVCAPVADISDELRALADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++ +    P+V  NP+++  SD+ ++Y+EGCLSIP+  A+V R   + V ++D + +
Sbjct: 61  DCVKEESAPARPLVMFNPRVVAASDETNIYEEGCLSIPEQYAEVTRPKVVDVEWIDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|148556945|ref|YP_001264527.1| peptide deformylase [Sphingomonas wittichii RW1]
 gi|166198523|sp|A5VDM3|DEF_SPHWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148502135|gb|ABQ70389.1| peptide deformylase [Sphingomonas wittichii RW1]
          Length = 177

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/174 (48%), Positives = 117/174 (67%), Gaps = 5/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP LR +S P+E ++ ++  LI +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRLILEAPDPRLRTISTPVEAVDDELRALIADMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           IDLQ+         ++P VFINP++   S++ SVY EGCLS+P+  A+V+R A I  R++
Sbjct: 61  IDLQEEEDAEGKPIRHPRVFINPELFDPSEEQSVYNEGCLSVPEQYAEVERPAVIHARWL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D          +GLLATCLQHE+DHL GILFIDHLSRLKR+M+ KK+ K  + R
Sbjct: 121 DEQGAKHEERLEGLLATCLQHEMDHLEGILFIDHLSRLKREMVMKKLEKARRAR 174


>gi|220924615|ref|YP_002499917.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
 gi|219949222|gb|ACL59614.1| peptide deformylase [Methylobacterium nodulans ORS 2060]
          Length = 173

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/167 (47%), Positives = 110/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+QIG   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSEPVGTITGEVRKLASDMLETMYDAPGVGLAAIQIGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       +NP+V ++P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  VDTSKDKEARNPLVLLDPEIVWASEETRSYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHE+DHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 VVEQEADGLLATCLQHEIDHLNGVLFIDHISKLKRDRVLKKFAKAAK 167


>gi|197121178|ref|YP_002133129.1| peptide deformylase [Anaeromyxobacter sp. K]
 gi|196171027|gb|ACG72000.1| peptide deformylase [Anaeromyxobacter sp. K]
          Length = 185

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|94495737|ref|ZP_01302317.1| polypeptide deformylase [Sphingomonas sp. SKA58]
 gi|94425125|gb|EAT10146.1| polypeptide deformylase [Sphingomonas sp. SKA58]
          Length = 176

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  PDP LR +S  ++ I+ D+  LID+M + MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIRPILEAPDPRLRTISTRVDAIDDDLQTLIDDMFDTMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ+           KNPMVFINP+I+  SDD SVY EGCLS+PD  A+V+R + I   
Sbjct: 61  IDLQEPESDEEGAPPVKNPMVFINPEILKGSDDLSVYNEGCLSVPDQFAEVERPSVIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD   +      +GLLATCLQHE+DHL GILFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDREGRIHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRDMLMKKLNKARR 174


>gi|56551709|ref|YP_162548.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762296|ref|ZP_04760377.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|81789136|sp|Q9REQ2|DEF_ZYMMO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543283|gb|AAV89437.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373199|gb|EER62829.1| peptide deformylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 177

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/174 (47%), Positives = 113/174 (64%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR  S  +E  + ++  LID+M E MY   GIGLAA+Q+GV  RL+V
Sbjct: 1   MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           I      +    ++NPMVFINP++    ++  +Y EGCLS+PD  A+V+R + I  ++ D
Sbjct: 61  IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +        +GLLATCLQHE+DHL GILFIDHLSRLKR M+ KK+ K  +LR+
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERKLRE 174


>gi|323142780|ref|ZP_08077493.1| peptide deformylase [Succinatimonas hippei YIT 12066]
 gi|322417425|gb|EFY08046.1| peptide deformylase [Succinatimonas hippei YIT 12066]
          Length = 175

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V FPD  LR++  P+ + ++ +  L D+M E MY  +GIGLAA QIG+  R+VV
Sbjct: 1   MAIREIVTFPDERLRQICAPVTEFDAALKELTDDMFETMYDDEGIGLAAPQIGIEKRIVV 60

Query: 61  IDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ID+ +   ++     +     IT  +     +EGCLS+P+YRA++KR   IT+   D N 
Sbjct: 61  IDIPEEDGKQGKNKLVLINPKITAKEGEVASEEGCLSVPEYRAEIKRYEKITLECQDLNG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Q QI  ADGLLA C+QHELDHL+G LFID+LSRLKRD +  K  KL + +
Sbjct: 121 QKQIYEADGLLAICMQHELDHLDGKLFIDYLSRLKRDRLLTKYRKLKKEQ 170


>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
          Length = 174

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/168 (54%), Positives = 123/168 (73%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            K LV  PDPILR VS+P+E+I+  I  L D+MLE MY   GIGLAA+Q+GV  R++VID
Sbjct: 1   MKSLVTLPDPILREVSKPVEQIDLAIQKLADDMLETMYHAQGIGLAAIQVGVPLRMLVID 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + ++   KNP+V INP+I+  SD+ ++Y+EGCLSIP+Y A V+R   + VRY D   +  
Sbjct: 61  IAENNTPKNPLVVINPEILWLSDERNIYKEGCLSIPEYYAQVERPKRLRVRYSDREGKQT 120

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K+ K  + +D
Sbjct: 121 EIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKLKKRAKEKD 168


>gi|304313372|ref|YP_003812970.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
 gi|301799105|emb|CBL47348.1| N-formylmethionyl-tRNA deformylase 1 [gamma proteobacterium HdN1]
          Length = 170

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+ + ++ +  L ++MLE MY   GIGLAA QI V  +++V
Sbjct: 1   MALLDILEFPDPRLRTQAKPVTQFDAALRKLTEDMLETMYDAPGIGLAATQINVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +           IT       Y+EGCLS+P +  +V R   I V+ ++   +
Sbjct: 61  MDVSEDKSQPM---VFINPQITVVGGEKEYEEGCLSVPGFHENVVRPDVIHVKALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+DHLNG+LF+DH+SRLKRD I +K+ K  +
Sbjct: 118 AFELQADGLLSVCLQHEMDHLNGVLFVDHISRLKRDRIRRKLEKQHK 164


>gi|319764921|ref|YP_004128858.1| peptide deformylase [Alicycliphilus denitrificans BC]
 gi|317119482|gb|ADV01971.1| peptide deformylase [Alicycliphilus denitrificans BC]
          Length = 171

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSEE--RDQPLVLINPEITWASPETRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 174

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ ++  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIAADVPDLSDELRALADDMLETMYAAPGIGLAAPQIGILDRLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V ++D +  
Sbjct: 61  DCVKEGEGEARPLVMFNPRVIAASDETNVYEEGCLSIPEQYAEVTRPKVVDVEWLDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|261856667|ref|YP_003263950.1| peptide deformylase [Halothiobacillus neapolitanus c2]
 gi|261837136|gb|ACX96903.1| peptide deformylase [Halothiobacillus neapolitanus c2]
          Length = 171

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 100/170 (58%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +++FPD  LRRV+  +++ ++ +  L + MLE MY   G+GLAA QI V  R+ V
Sbjct: 1   MSLLEVLLFPDERLRRVAAEVKQFDARVQRLSEQMLETMYDARGVGLAATQIDVHERMFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +      P+VFINP I+  S      +EGCLSIP     V R+  + VR  +   +
Sbjct: 61  ADCAEDGCAPEPLVFINPVILDRSGSVES-EEGCLSIPGVTDKVMRAEAVRVRAQNAFGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A GLLA C+QHE+DHL+G LFID+LS LKR  I KK+ K ++ ++
Sbjct: 120 SFEREAGGLLAICIQHEIDHLDGRLFIDYLSPLKRQRIRKKLEKALRQKE 169


>gi|182677492|ref|YP_001831638.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633375|gb|ACB94149.1| peptide deformylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 193

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 9/179 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP+LRRV  P+  ++S+I  L+D+MLE MY   GIGLAA QI V+ R++V
Sbjct: 1   MALRSIITIPDPLLRRVCDPVADVDSEIRRLMDDMLETMYDAPGIGLAASQIAVMKRVIV 60

Query: 61  IDLQDHAH---------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+                 P+   NP+I+  S++ S Y+EGCLSIPDY  +V R A + 
Sbjct: 61  MDVAKRRKGEDGAEADVAPQPLALANPEILWASEELSTYEEGCLSIPDYYEEVVRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           V Y+D   Q Q + ADG+LATC+QHE+DHLNG+LFIDH+SRLKR+ I KK SK  +  +
Sbjct: 121 VGYLDRQGQRQELEADGILATCVQHEIDHLNGVLFIDHISRLKRERIVKKFSKAAKRDN 179


>gi|307294614|ref|ZP_07574456.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
 gi|306879088|gb|EFN10306.1| peptide deformylase [Sphingobium chlorophenolicum L-1]
          Length = 176

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/174 (54%), Positives = 122/174 (70%), Gaps = 7/174 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S P+E I++D+  LID+MLE MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAILPILEAPDPRLRTISSPVEAIDADLQRLIDDMLETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQ-------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           IDLQ       D    K PMVFINP+I+  S+D SVY EGCLS+PD  A+V+R A I   
Sbjct: 61  IDLQEPESDEEDAPPVKKPMVFINPEILEGSEDLSVYNEGCLSVPDQFAEVERPASIRAS 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +MD + +      +GLLATCLQHE+DHL G+LFIDHLSRLKRDM+ KK++K  +
Sbjct: 121 WMDRDGRIHEERLEGLLATCLQHEMDHLQGVLFIDHLSRLKRDMLMKKLTKARK 174


>gi|217977312|ref|YP_002361459.1| peptide deformylase [Methylocella silvestris BL2]
 gi|254767594|sp|B8ENG6|DEF_METSB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|217502688|gb|ACK50097.1| peptide deformylase [Methylocella silvestris BL2]
          Length = 196

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PD  LR V+RP+  ++S++  L+D+MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MPLRPIIILPDKRLRLVARPVASVDSEVRALMDDMLETMYEAPGIGLAATQIAVDRRVIV 60

Query: 61  ID---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           +D    +D + + +P+   NP+I+  S++ S Y+EGCLSIP++  +V R   + V Y+D 
Sbjct: 61  LDVAKRRDDSAKADPICLANPEILWASEELSSYEEGCLSIPEFYEEVFRPEKVRVGYLDR 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + + I ADGLLATCLQHE+DHLNG+LFIDH+SRLKR  I KK  K  +L
Sbjct: 121 DGRRREIEADGLLATCLQHEIDHLNGVLFIDHISRLKRARIIKKFEKAAKL 171


>gi|163738219|ref|ZP_02145635.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
 gi|163743813|ref|ZP_02151186.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161382962|gb|EDQ07358.1| peptide deformylase [Phaeobacter gallaeciensis 2.10]
 gi|161388835|gb|EDQ13188.1| Peptide deformylase [Phaeobacter gallaeciensis BS107]
          Length = 172

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++  +  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAAVPDMSDALRTLADDMLETMYAAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 61  DCVKEEDGPARPLVMFNPEVVASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 121 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|329894842|ref|ZP_08270642.1| Peptide deformylase [gamma proteobacterium IMCC3088]
 gi|328922736|gb|EGG30070.1| Peptide deformylase [gamma proteobacterium IMCC3088]
          Length = 178

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++      LI +M E MY   GIGLAA Q+ V  R++V
Sbjct: 11  MALLQILEFPDPRLRTIAKPVAEVTDQHRALIKDMFETMYQAPGIGLAATQVNVHERILV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VFINP++     +   Y EGCLS+P +   V R   I VR ++   +
Sbjct: 71  IDVSEDKSE--PRVFINPEVEVLDPELGEYDEGCLSVPGFYDTVCRPQRIKVRALNEQGE 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                  GLLA CLQHE+DHL+G LF+D+LS LKR+ I KK+ K  + +
Sbjct: 129 AYEEELGGLLAICLQHEIDHLDGKLFVDYLSPLKRNRIRKKLEKAHRAK 177


>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D N +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRNGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
          Length = 171

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/169 (52%), Positives = 121/169 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+  I  L D+MLE MY+  G+GLAAVQ+G+  R++V
Sbjct: 1   MSIKPLVILPDPILREVSKPVEHIDPIIQKLADDMLETMYNAQGVGLAAVQVGIPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KN +V INP+I+  SD+ SVY+EGCLSIP+Y A+V+R   + + Y +   +
Sbjct: 61  VDISPKDAPKNSLVVINPEILWISDERSVYREGCLSIPEYFAEVERPKCLRISYKNREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  + +
Sbjct: 121 QEEIEANDLLATCLQHEIDHLNGYLFIDHISKTKRDMVIRKFKKRAKKQ 169


>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
 gi|63253997|gb|AAY35093.1| Formylmethionine deformylase [Pseudomonas syringae pv. syringae
           B728a]
 gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
          Length = 168

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLATC+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLATCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|197286654|ref|YP_002152526.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227355155|ref|ZP_03839566.1| peptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684141|emb|CAR45570.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227164942|gb|EEI49789.1| peptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 172

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+ FPD  LR+V+ P+EK++ +I  LID+M+E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLTLLHFPDERLRKVATPVEKVDDEIRTLIDDMIETMYAERGIGLAAPQVNVSKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  P+  INP+II+  D+     +GCLSIPD  A  +R  ++ V+ +D N  
Sbjct: 61  IDVSEN--RDQPIALINPEIISTEDEIMDMMDGCLSIPDSFAPTQRFRYLKVKALDRNGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  L A C+QHELDHLNG LFIDHLS LKR  I KK  KL +L
Sbjct: 119 EIELEAADLFAGCIQHELDHLNGKLFIDHLSPLKRQRIEKKQKKLSKL 166


>gi|153003639|ref|YP_001377964.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
 gi|152027212|gb|ABS24980.1| peptide deformylase [Anaeromyxobacter sp. Fw109-5]
          Length = 185

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+E+++  I  L+D+M E MY+ DG+GLAA QI VL R++VI
Sbjct: 1   MVREIVIWPDPILKEVANPVERVDDSIRRLLDDMAETMYAADGVGLAAPQIAVLKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R+A + VR +D + + 
Sbjct: 61  DTSPRQEGQKLIHLVNPEIVRAEGETTWTEG-CLSIPGEAEDVARAAKVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + AD LLA  +QHE DHLNG LF+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADELLAIAVQHETDHLNGTLFVDHLSSLKRELIRKRMKKLKTQR 167


>gi|119383399|ref|YP_914455.1| peptide deformylase [Paracoccus denitrificans PD1222]
 gi|119373166|gb|ABL68759.1| peptide deformylase [Paracoccus denitrificans PD1222]
          Length = 173

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+++  P+ +I  +I  L  +ML  MY   G+GLAA Q+GVL RL V
Sbjct: 1   MTLRSIILHPDPRLKKICEPVARITPEIETLAADMLATMYDAPGVGLAAPQVGVLSRLYV 60

Query: 61  IDLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D +      +NP+V +NP++   S+  + Y+EGCLSIP+  ADV R A + VR++  + 
Sbjct: 61  MDCEKDPEAPRNPIVMVNPEVTWTSEALNTYEEGCLSIPEQYADVTRPAEVRVRWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +      +GL ATC QHE+DHL+G LFIDHL  +KR MIT+KM KL + R
Sbjct: 121 KTHEREFEGLWATCAQHEIDHLDGRLFIDHLGPIKRQMITRKMVKLKRER 170


>gi|86157152|ref|YP_463937.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773663|gb|ABC80500.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 185

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V++P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAQPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D   + 
Sbjct: 61  DTSPRQEGQTLLHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDRQGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEADGLLAVALQHETDHLNGTMFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
 gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
          Length = 171

 Score =  151 bits (381), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 125/170 (73%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR VS+P+E I+S I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MPIKPLVILPDPILREVSKPVEHIDSIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  S++ ++Y+EGCLSIP+Y A+V+R  ++ + Y D   +
Sbjct: 61  LDISSKDAPKNPLVVINPEILWISNERNIYREGCLSIPEYYAEVERPKYLRICYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I AD LLATCLQHE+DHLNG LFIDH+S++KRDM+ +K  K  + ++
Sbjct: 121 QAEIEADDLLATCLQHEIDHLNGCLFIDHISKIKRDMVIRKFKKRAKKQN 170


>gi|298484627|ref|ZP_07002731.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 168

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PRVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|121596335|ref|YP_988231.1| peptide deformylase [Acidovorax sp. JS42]
 gi|222112559|ref|YP_002554823.1| peptide deformylase [Acidovorax ebreus TPSY]
 gi|120608415|gb|ABM44155.1| peptide deformylase [Acidovorax sp. JS42]
 gi|221732003|gb|ACM34823.1| peptide deformylase [Acidovorax ebreus TPSY]
          Length = 170

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+M   MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVTAVDERVRAIVDDMFATMYDAHGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I   S +  V  EGCLS+P     V+RS  + VR +D + Q
Sbjct: 61  IDVSEERDT--PLVLINPEITWASAEKQVGDEGCLSVPGIYDGVERSTAVHVRALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 PRVIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|292493779|ref|YP_003529218.1| peptide deformylase [Nitrosococcus halophilus Nc4]
 gi|291582374|gb|ADE16831.1| peptide deformylase [Nitrosococcus halophilus Nc4]
          Length = 167

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  R+VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVATVDESIKKLADDMLETMYQAPGIGLAAIQVNVPKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+         +  CLS+P+    V R+A ITVRY+D   Q
Sbjct: 61  IDISEDKSS--PLVLINPEIVARRGKAESDEG-CLSVPEIFEPVTRAAEITVRYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A  LLATC+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 EQELEAQELLATCIQHELDHLEGKLFIDYLSTLKRQRIRKKVEKRQRL 165


>gi|240849749|ref|YP_002971137.1| polypeptide deformylase [Bartonella grahamii as4aup]
 gi|240266872|gb|ACS50460.1| polypeptide deformylase [Bartonella grahamii as4aup]
          Length = 178

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/172 (50%), Positives = 123/172 (71%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+++++S +  L D+MLE MY+  GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVDQVDSALQKLADDMLETMYNAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+       RK P V INP+I+  SD+ ++Y+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNSEDERKKPFVIINPEILWLSDERNIYKEGCLSIPDYFAEVERPKRLCVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   I AD LLATCLQHE+DHL+G LFID++S++KRDM+ +K  K  + ++
Sbjct: 121 GKQTEIEADDLLATCLQHEIDHLDGRLFIDYISKIKRDMVIRKFKKRAKEKN 172


>gi|323135726|ref|ZP_08070809.1| peptide deformylase [Methylocystis sp. ATCC 49242]
 gi|322398817|gb|EFY01336.1| peptide deformylase [Methylocystis sp. ATCC 49242]
          Length = 188

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 87/170 (51%), Positives = 121/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR+VS P+E+I+++I  L+D+MLE MY+  GIGLAA+Q+ V  R+VV
Sbjct: 1   MALLPIITLPDPRLRKVSEPVERIDAEIHRLLDDMLETMYAAPGIGLAAIQVAVAKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      ++P+  INP+II  S++ S YQEGCLS+PDY  DVKR A + VR++D + Q
Sbjct: 61  VDIGKTEDERSPLFLINPEIIWASEELSSYQEGCLSVPDYFDDVKRPAMVKVRHLDRHGQ 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q   A GLLAT +QHEL+HL G LFID+LSRLKR+ + KK SK  +  +
Sbjct: 121 TQEFDAVGLLATVVQHELEHLEGGLFIDNLSRLKRERVVKKFSKAARFDE 170


>gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 168

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMV INP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVLINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|330827125|ref|YP_004390428.1| peptide deformylase [Alicycliphilus denitrificans K601]
 gi|329312497|gb|AEB86912.1| Peptide deformylase [Alicycliphilus denitrificans K601]
          Length = 171

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  +  ++D+ML  MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAKPVATVDERVRAIVDDMLATMYDANGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I   S +  + +EGCLS+P     V+RS  +  R +D + Q
Sbjct: 61  IDVSEE--RDQPLVLINPEITWASPEMRMGEEGCLSVPGIYDGVERSLAVHARALDRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + +
Sbjct: 119 PRTIEAEGLLAVCIQHEMDHLLGKVFVEYLSPLKRNRIKTKLLKQQKQQ 167


>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
 gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
          Length = 168

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  +  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAVVDDKVRQLVDDMFETMYEAPGIGLAATQVNVHLRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P V+INP+    +D+   YQEGCLS+P++  +V+R   + ++ +D + +
Sbjct: 61  MDLSEDRSE--PRVYINPEFEPLTDEMGEYQEGCLSVPEFYENVERPLRVKIKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  + +
Sbjct: 119 PFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIKKKLEKKHRQQ 167


>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
 gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 168

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTIAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
 gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
          Length = 174

 Score =  151 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++++  +  ++ D+  L D+MLE MY+  GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  A+V R   + V +MD +  
Sbjct: 61  DCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYAEVTRPKVVDVEWMDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 LQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|288941787|ref|YP_003444027.1| peptide deformylase [Allochromatium vinosum DSM 180]
 gi|288897159|gb|ADC62995.1| peptide deformylase [Allochromatium vinosum DSM 180]
          Length = 185

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR+ +RP+E+++  I  L+D+MLE MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILTFPDPRLRQKARPVEQVDDQIRRLVDDMLETMYAAPGIGLAATQVDVQRQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+ FINP+++       + +  CLS+P +   V R+  +TV  +D + +
Sbjct: 61  IDVSEGHDT--PLCFINPRLVAREGTEQMDEG-CLSVPGFFETVTRAERVTVEALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL+G LF+DH+S LKR  I  K+ K  + R
Sbjct: 118 PFKLDADGLLAVCIQHEMDHLDGKLFVDHISILKRQRIRHKLEKQRKER 166


>gi|222147432|ref|YP_002548389.1| peptide deformylase [Agrobacterium vitis S4]
 gi|221734422|gb|ACM35385.1| peptide deformylase [Agrobacterium vitis S4]
          Length = 176

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 97/159 (61%), Positives = 123/159 (77%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP++I PDP+LR VS+PIE+I++D+  LID+MLE MY   GIGLAAVQI V  RL+V
Sbjct: 5   MTTKPIIILPDPLLREVSQPIERIDADLERLIDDMLETMYDAPGIGLAAVQIAVPRRLLV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      K P+VFINP+II  S   S Y+EGCLSIPDY A+V+R A +TV+ +D + +
Sbjct: 65  IDVSKEGEDKQPLVFINPEIIGSSQARSTYEEGCLSIPDYYAEVERPAAVTVKSLDRHGK 124

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            Q+I ADGLLATCLQHE+DHLNG LFIDH+SRLKR+M+ 
Sbjct: 125 EQVIEADGLLATCLQHEIDHLNGTLFIDHISRLKREMVI 163


>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
 gi|254767569|sp|C1F541|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
          Length = 170

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M+ +P+V +PDP+L++ + P+ + N ++  L+D+M E MY   GIGLAA QIG+  RL V
Sbjct: 1   MMIRPIVKYPDPVLQQPAEPVTEFNEELRALVDDMFESMYEAKGIGLAAPQIGISKRLTV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL    +    +V INP+II   +     +EGCLS+PD R  V R+  +TVR  + + +
Sbjct: 61  IDLSFKENPDEKIVLINPEII-HREGRQYEEEGCLSLPDIREKVVRAEKVTVRAQNLDGE 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + LL+   QHE+DHL+G+LFI  +S LKRD++ +++ K+ +  +
Sbjct: 120 WFEMDGEELLSRAFQHEIDHLDGVLFIFRISALKRDLVLRRIRKMQRAGE 169


>gi|13474065|ref|NP_105633.1| peptide deformylase [Mesorhizobium loti MAFF303099]
 gi|23396550|sp|Q98D52|DEF_RHILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA deformylase [Mesorhizobium loti
           MAFF303099]
          Length = 176

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  ++  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
 gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
          Length = 182

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/169 (50%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V   +  ++ D+  L D+MLE MY+  GIGLAA QIG+L RL+V+
Sbjct: 11  MKRPILIHPDPRLKKVCAAVPDLSDDLRVLADDMLETMYAAPGIGLAAPQIGILQRLIVL 70

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II  SD+ +VY+EGCLSIPD  A+V R   + V +MD +  
Sbjct: 71  DCVKEEDGDPRPLVMFNPEIIASSDETNVYEEGCLSIPDQYAEVTRPKVVEVEWMDRSGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  LKR MIT+KM KL + R
Sbjct: 131 AQRETFDGLWATCVQHEIDHLNGKLFIDYLKPLKRQMITRKMQKLKRER 179


>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
 gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
 gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|32363153|sp|Q88B43|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
 gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 168

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSA--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|238693290|sp|B4S291|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 169

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            IT  D  ++ +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|311696635|gb|ADP99508.1| peptide deformylase [marine bacterium HP15]
          Length = 167

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/166 (42%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V+
Sbjct: 1   MILEILEYPDPRLRTIAKPVEEVTDADRKLIDDMFETMYDAPGIGLAATQVNVHKQIIVM 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL +      P VFINP++     +    QEGCLS+P +  DV+R     +R MD + + 
Sbjct: 61  DLSEDKSE--PRVFINPEVEVLDGEREAMQEGCLSVPGFYEDVERIEHCMIRAMDRDGKP 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + A GLLA C+QHE+DHLNG LF+D+LS LKR+ I KK+ K  +
Sbjct: 119 FELEAKGLLAVCIQHEMDHLNGRLFVDYLSSLKRNRIRKKLEKQHK 164


>gi|71083162|ref|YP_265881.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|123748062|sp|Q4FNG1|DEF_PELUB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71062275|gb|AAZ21278.1| peptide deformylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 172

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/169 (47%), Positives = 119/169 (70%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K ++  P+ +LR++S+P+E +  +   L+D+ML+ MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MSVKSILTEPNKLLRQISKPVENVGDEERRLMDDMLDTMYAAPGIGLAAIQIGVPKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +K P  F+NP I   +D  S Y+EGCLS+PD  A+++R     V Y+D N +
Sbjct: 61  MDISRDEDKKEPRYFVNPVIKNKNDITSKYEEGCLSVPDQFAEIERPNECEVEYLDYNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q++ ADGLLATC+QHE+DHL G+LFID+LS+LK+ MI KK+SK+   R
Sbjct: 121 KQLLKADGLLATCIQHEMDHLEGVLFIDYLSKLKKSMIIKKLSKIKSNR 169


>gi|88801027|ref|ZP_01116576.1| peptide deformylase [Reinekea sp. MED297]
 gi|88776230|gb|EAR07456.1| peptide deformylase [Reinekea sp. MED297]
          Length = 169

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++PIEK++ +I  L D+MLE MY   GIGLAA Q+    RL+V
Sbjct: 1   MALLDILEFPDPRLRTVAKPIEKVDGEIQKLADDMLETMYDAPGIGLAASQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +   P + INP+     +D    +  CLS+P Y   V RS  I+VR ++ +  
Sbjct: 61  VDVSEDQND--PHILINPEYDRLGEDIEYQEG-CLSVPGYYEKVSRSDRISVRALNRDGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A  L A C+QHE+DHL+G LF+D+LS LKR  I KK+ K  + 
Sbjct: 118 AIEFEATDLFAICIQHEIDHLDGKLFVDYLSNLKRTRIRKKLEKQHKQ 165


>gi|170742368|ref|YP_001771023.1| peptide deformylase [Methylobacterium sp. 4-46]
 gi|168196642|gb|ACA18589.1| peptide deformylase [Methylobacterium sp. 4-46]
          Length = 173

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/167 (47%), Positives = 109/167 (65%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR  S P+  I  ++  L  +MLE MY   G+GLAA+Q+G   R+V 
Sbjct: 1   MTIRPLVILPDARLRVTSSPVGTITGEVRKLAADMLETMYDAPGVGLAAIQVGEPTRIVT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID       + P+V I+P+I+  S++   Y+EGCLSIP+Y A+V R   + VR+   + +
Sbjct: 61  IDTSKDKEARTPLVLIDPEIVWSSEETRAYEEGCLSIPEYYAEVVRPDRVRVRFRTLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLATCLQHELDHLNG+LFIDH+S+LKRD + KK +K  +
Sbjct: 121 TVEQEADGLLATCLQHELDHLNGVLFIDHISKLKRDRVMKKFAKAAK 167


>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
 gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
          Length = 169

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+ V+ P+ + +  ++ L  +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLKTVATPVTQFDDALVKLTQDMAETMYDAPGVGLAATQVNVHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        VFINP+II  S +  VY+EGCLS+P     V+R   + VR  +   +
Sbjct: 61  IDVTDDKSGLT--VFINPEIIDASKECKVYEEGCLSVPGIYEKVERPDTVKVRAQNVKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  D LLA C+QHE+DHLNG +F+++LS+LK+  I  KM K  +L+
Sbjct: 119 WFEIDCDELLAVCIQHEIDHLNGKVFVEYLSQLKQTRIKTKMKKQDKLQ 167


>gi|197103839|ref|YP_002129216.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
 gi|238690164|sp|B4RDT8|DEF_PHEZH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|196477259|gb|ACG76787.1| polypeptide deformylase [Phenylobacterium zucineum HLK1]
          Length = 169

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 113/156 (72%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ P P L++VS+P+EK++ ++  L+D+MLE MY+  GIGLAA+QIGV  R++V
Sbjct: 1   MAIREILVVPHPALKQVSQPVEKVDDELRALMDDMLETMYAAPGIGLAAIQIGVPKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL      K P  F+NP+I+  SDD + Y+EGCLS+P+Y  +V+R A + +RY++   +
Sbjct: 61  MDLAREGEEKQPRYFVNPEILWASDDTAPYEEGCLSVPEYYDEVERPARVKLRYLNYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
                A+GL A C+QHE+DHL G+LFIDHLSRLKR+
Sbjct: 121 QVEEDAEGLFAVCIQHEMDHLEGVLFIDHLSRLKRE 156


>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
 gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
          Length = 208

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+      + +LI +M + MY   G+GLAA QI V  +L+V
Sbjct: 30  MARLPILRYPDPRLLKPSRPVTDFGDSLKSLIADMAQTMYEAPGVGLAAPQINVHKQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I+  S++ ++++EGCLS+P    +++R A +TVR +D N +
Sbjct: 90  IDVSE--QKNELRVFINPQIVKASEEKAIFEEGCLSLPGIYDEIERPAKVTVRALDANGK 147

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + 
Sbjct: 148 EFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMKRNRIKKKLLKEERE 195


>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
 gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
          Length = 183

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L + SRP+   +S++  L++NM + MY   G+GLAA Q+    ++VV
Sbjct: 1   MARLPILRYPDPRLLKPSRPVTSFDSELKTLVENMAQTMYEAPGVGLAAPQVNAHRQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +  +  VFINP+II  S++ ++++EGCLS+P    +++R A +TVR  D + +
Sbjct: 61  IDVSEKRNELH--VFINPQIIKASEEKTLFEEGCLSLPGIYDEIERPARVTVRAQDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G +F+D+LS +KR+ I KK+ K  + +
Sbjct: 119 AFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMKRNRIKKKLLKEEREQ 167


>gi|239993910|ref|ZP_04714434.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
          Length = 169

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            I   D  ++ +EGCLS+P   A V+R+  ITV+ +D N +
Sbjct: 61  MDVSEDQNEPR---VFINPEIIRKDGSTISEEGCLSVPGNYAKVERAESITVKALDQNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 SFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKEARL 165


>gi|220915878|ref|YP_002491182.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953732|gb|ACL64116.1| peptide deformylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 185

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 108/168 (64%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+PDPIL+ V+ P+++++  I  L+D+M E MY+ DG+GLAA QI V  R++VI
Sbjct: 1   MVREIVIWPDPILKEVAHPVDRVDDGIRRLLDDMAETMYAADGVGLAAPQIAVKKRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +  +  +NP+I+    + +  +  CLSIP    DV R A + VR +D + + 
Sbjct: 61  DTSPRQEGQTLIHLVNPEIVRGEGELTYTEG-CLSIPGEAEDVDRFARVWVRALDYHGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + A+GLLA  LQHE DHLNG +F+DHLS LKR++I K+M KL   R
Sbjct: 120 FELEAEGLLAVALQHETDHLNGTVFVDHLSSLKRELIRKRMKKLKAQR 167


>gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
 gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
          Length = 180

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP LR +S+P+E  ++++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 4   MAILPIIETPDPRLRVISKPVETFDAELKQLVADMFETMYDAPGIGLAAIQVGVPKRILV 63

Query: 61  IDLQD--------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           IDLQ+            + P VFINP    FSD+ SVYQEGCLS+P+  ADV R A +TV
Sbjct: 64  IDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDEHSVYQEGCLSVPEQYADVTRPAEVTV 123

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + D + +H      GL+ATC+QHE DHL GILFIDHLSRLKR+M+ KK++KL +
Sbjct: 124 DWQDEDGKHHQERMTGLMATCIQHEHDHLEGILFIDHLSRLKREMVLKKLAKLRK 178


>gi|260461121|ref|ZP_05809370.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
 gi|259033155|gb|EEW34417.1| peptide deformylase [Mesorhizobium opportunistum WSM2075]
          Length = 176

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 121/158 (76%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPL+I PDPILR+VS+P+E++++ +  L D+ML  MY   GIGLAA+QIG   R++V
Sbjct: 1   MPIKPLIILPDPILRQVSKPVERVDAPLRGLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL        P VFINP+I+  +D  SVY+EGCLSIPDY A+V+R A + V+Y+D + +
Sbjct: 61  IDLAKEDETPAPHVFINPEILESADARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
            Q + A+GL+ATCLQHE+DHLNG+LFIDH+S+LKRDM+
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMV 158


>gi|121602173|ref|YP_989567.1| peptide deformylase [Bartonella bacilliformis KC583]
 gi|158513863|sp|A1UUB4|DEF_BARBK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|120614350|gb|ABM44951.1| peptide deformylase [Bartonella bacilliformis KC583]
          Length = 182

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/176 (47%), Positives = 123/176 (69%), Gaps = 6/176 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KPLVI PDPILR +S+P+E I+S I  L D+MLE MY+  GIGLAA+Q+G+  R++V
Sbjct: 1   MPIKPLVILPDPILREISKPVEHIDSTIQQLADDMLETMYNAGGIGLAAIQVGIPLRMLV 60

Query: 61  ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D      + +    ++P++ INP+I+  SD+ ++  EGCLSIP Y A+V+R   + +RY
Sbjct: 61  VDVSIFTSIFEPDAPQDPIIVINPEILWLSDERNICMEGCLSIPGYSAEVERPKRLCIRY 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +   + + I AD +LATCLQHE+DHLNG LFIDHLS++KR+M+ +K  K  +  +
Sbjct: 121 RNREGEQKEIEADNILATCLQHEIDHLNGCLFIDHLSKVKRNMVIRKFEKRAKENN 176


>gi|163867376|ref|YP_001608570.1| peptide deformylase [Bartonella tribocorum CIP 105476]
 gi|189083066|sp|A9ILK4|DEF_BART1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|161017017|emb|CAK00575.1| polypeptide deformylase [Bartonella tribocorum CIP 105476]
          Length = 178

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/172 (50%), Positives = 124/172 (72%), Gaps = 2/172 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + LV  PDPILR VS+P+E++++ +  L D+MLE MY   GIGLAA+QIG+  R++V
Sbjct: 1   MPMRSLVTLPDPILREVSKPVEQVDTALQELADDMLETMYHAKGIGLAAIQIGIPLRMLV 60

Query: 61  IDLQD--HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+       +K P+V INP+I+  SD+ +VY+EGCLSIPDY A+V+R   + VRY +  
Sbjct: 61  IDVSGNAEDTQKKPLVIINPEILWLSDERNVYKEGCLSIPDYFAEVERPKRLRVRYQNRE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + + I AD LLATCLQHE+DHL+G LFID++SR+KRDM+ +K  K  + ++
Sbjct: 121 GKQKEIEADDLLATCLQHEIDHLDGRLFIDYISRIKRDMVIRKFKKRAKEKN 172


>gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 168

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|71905663|ref|YP_283250.1| peptide deformylase [Dechloromonas aromatica RCB]
 gi|71845284|gb|AAZ44780.1| peptide deformylase [Dechloromonas aromatica RCB]
          Length = 167

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP L++V+ P+ K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRFPDPRLKKVALPVAKVDDSIRKLVADMAETMYEAPGIGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +              +++  +     +EGCLS+P     V+R+  + V Y+D +  
Sbjct: 61  IDVSEDKSEL---QAFINPVLSRCEGSQTGEEGCLSVPGIYDKVERAESVVVTYLDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q + ADGLLA CLQHELDHLNG +F+DHLS LK+  I  K++K  +
Sbjct: 118 QQTLAADGLLAVCLQHELDHLNGTVFVDHLSLLKQTRIRNKLAKQAR 164


>gi|289664808|ref|ZP_06486389.1| peptide deformylase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289667878|ref|ZP_06488953.1| peptide deformylase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|307543965|ref|YP_003896444.1| peptide deformylase [Halomonas elongata DSM 2581]
 gi|307215989|emb|CBV41259.1| peptide deformylase [Halomonas elongata DSM 2581]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ FPD  LR  +  +E ++ ++  L+D+MLE MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLPILEFPDERLRTEAAAVETVDDEVRQLVDDMLETMYDARGIGLAATQVDVHRRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D      P+V INP+     D+    QEGCLSIP+Y A+V R+  + ++ ++   +
Sbjct: 61  MDVSDDQSA--PLVLINPEYTPIGDEREPMQEGCLSIPEYYAEVPRALKVHLKALNRQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHL G+LF+D+LS LKRD + KKM K  +L
Sbjct: 119 PYELEAEGLLAHCIQHECDHLRGVLFVDYLSPLKRDRVMKKMQKRHKL 166


>gi|75677243|ref|YP_319664.1| formylmethionine deformylase [Nitrobacter winogradskyi Nb-255]
 gi|74422113|gb|ABA06312.1| peptide deformylase [Nitrobacter winogradskyi Nb-255]
          Length = 187

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 112/171 (65%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R+V 
Sbjct: 13  MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIVT 72

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++      P VFINP+I++ S++ SVY+EGCLSIP+Y   V+R + + +R+ D
Sbjct: 73  MDLARRDEEGELTPRPRVFINPEILSASEELSVYEEGCLSIPEYYEAVERPSRVRIRFTD 132

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +     A+GL ATC+QHE+DHLNG+LF+DHLS+LKRD + KK +K  +
Sbjct: 133 LDGKVHEEDAEGLFATCIQHEIDHLNGVLFVDHLSKLKRDRVMKKFTKAAK 183


>gi|325913842|ref|ZP_08176201.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325539917|gb|EGD11554.1| peptide deformylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 106/170 (62%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDATEVTSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+T   +    +  CLS+P   ADV R+  I VRY+D 
Sbjct: 61  FMVIDVSEEKNA--PQVFINPEIVTRQGEQVYQEG-CLSVPGIFADVSRADAIAVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q   +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K+ +
Sbjct: 118 QGQAHELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKMRK 167


>gi|91974563|ref|YP_567222.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
 gi|123722270|sp|Q13F18|DEF_RHOPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91681019|gb|ABE37321.1| peptide deformylase [Rhodopseudomonas palustris BisB5]
          Length = 175

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y ADV+R A + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYADVERPAVVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHL+G+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLDGVLFVDHLSKLKRAMVVRKFEKAAK 169


>gi|297183538|gb|ADI19667.1| N-formylmethionyl-tRNA deformylase [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 169

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++N +I  L+ +M E M   +GIGLAA Q+    ++VV
Sbjct: 1   MAILDVLSFPDERLRTVAKPVEEVNDEIKQLVSDMFETMKDENGIGLAATQVNRHVQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +  +            IT  D  ++ +EGCLS+P   A V+R+  ITV+ ++   +
Sbjct: 61  MDVSEDQNEPR---VFINPEITRKDGSTISEEGCLSVPGNYAKVERAEAITVKALNEEGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHELDHL G LFID+LS LKR  I KK+ K  +L
Sbjct: 118 AFELDAEGLLAICIQHELDHLKGKLFIDYLSPLKRQRIRKKLEKDARL 165


>gi|221069823|ref|ZP_03545928.1| peptide deformylase [Comamonas testosteroni KF-1]
 gi|220714846|gb|EED70214.1| peptide deformylase [Comamonas testosteroni KF-1]
          Length = 170

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  SD+  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSEERNE--PMALINPEILWASDETQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 177

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MIRPILIHPDPRLKKICDPVGQITDDLRRLADDMLATMYDAPGIGLAAPQVGVVRRLIVL 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D    +   + P+  +NP+++  S+D S Y+EGCLS+P+  ADV+R A + VR+   + +
Sbjct: 61  DCNKESDGARRPVAMVNPEVVWRSEDVSTYEEGCLSLPNVFADVERPAEVKVRWTGLDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFAGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFKRAQ 169


>gi|332039013|gb|EGI75442.1| peptide deformylase [Hylemonella gracilis ATCC 19624]
          Length = 174

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P++ +++ I  LI +M E MY  +GIGLAA QI V  RLVV
Sbjct: 1   MALLPILTYPDPRLHTVAQPVQAVDARIKQLIADMFETMYDMNGIGLAATQINVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P VFINP+I+  S +  + +EGCLS+P     V+R   + VR +D   Q
Sbjct: 61  IDVSE--GRDQPQVFINPEIVWASPETKINEEGCLSVPGIYDGVERHERVHVRALDGEGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +++  +GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM KL + 
Sbjct: 119 SRVVECEGLLSICIQHEMDHLMGKVFVEYLSPLKRNRIKTKMQKLQRE 166


>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
 gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
 gi|81698398|sp|Q6NC51|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487564|sp|B3QCH1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
           [Rhodopseudomonas palustris CGA009]
 gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
          Length = 175

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVTEVTTEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|325924333|ref|ZP_08185877.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
 gi|325545198|gb|EGD16508.1| peptide deformylase [Xanthomonas gardneri ATCC 19865]
          Length = 170

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSPAFQRLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VFINP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFINPQIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYVDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q +  +GLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 HGQAQELSTEGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|117923458|ref|YP_864075.1| peptide deformylase [Magnetococcus sp. MC-1]
 gi|117607214|gb|ABK42669.1| peptide deformylase [Magnetococcus sp. MC-1]
          Length = 173

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDP+L++ + P+  +++ I  L+ +MLE MY+  GIGLAA Q+GV  R++V
Sbjct: 1   MAILPIVTAPDPVLKKRAEPVVAVDASIQQLMRDMLETMYAAPGIGLAAPQVGVSKRVIV 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D    + A +      +    I  ++    ++EGCLS+P+    V R   + VR ++  
Sbjct: 61  VDVTYSEAAAQDGEPYCLANPEIIAAEGEITWEEGCLSVPESYGKVDRKEHVVVRGLNAQ 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +   + A GL A CLQHE+DHL+G LFIDHLS LKR M
Sbjct: 121 GELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLSSLKRTM 159


>gi|108761299|ref|YP_629687.1| peptide deformylase [Myxococcus xanthus DK 1622]
 gi|108465179|gb|ABF90364.1| peptide deformylase [Myxococcus xanthus DK 1622]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/169 (42%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+PDP+L++ ++P+ K++     L+ +M E MYS +G+GLAA QIGVL R++V+
Sbjct: 1   MVREILIWPDPVLKQKAKPVAKVDDSTRTLVKDMFETMYSAEGVGLAAPQIGVLQRVIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+II    D +  +  CLSIP   ADV R+A +TV+++D + Q 
Sbjct: 61  DTTHSQPELKPVAMINPEIIAMEGDTTYNEG-CLSIPGEAADVDRAAVVTVKFLDPDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  DGLL+  +QHE DHLNG +F+DH+S LKR+ I K+M +L   R+
Sbjct: 120 QTLRCDGLLSIAVQHETDHLNGTVFVDHISSLKREFIRKRMKRLKTSRE 168


>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
 gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
          Length = 173

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++ +  + + +  +  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MSIRPILIHPDPRLKKRADEVTEFDDALCVLGDDMLDTMYDAPGIGLAAPQIGVMSRVFV 60

Query: 61  IDL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D  ++      PMV +NP+I   SD+ + Y EGCLSIP+  A+V R A + V + D   
Sbjct: 61  MDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEGCLSIPEQYAEVDRPAEVKVTWQDVEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 TQYEAQFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRE 169


>gi|253997897|ref|YP_003049960.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|313199962|ref|YP_004038620.1| peptide deformylase [Methylovorus sp. MP688]
 gi|253984576|gb|ACT49433.1| peptide deformylase [Methylovorus sp. SIP3-4]
 gi|312439278|gb|ADQ83384.1| peptide deformylase [Methylovorus sp. MP688]
          Length = 166

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N++I  LID+M E MY+  GIGLAA Q+ V  +++V
Sbjct: 1   MAILDILNYPDPRLYTVAKPVKEVNANIRRLIDDMAETMYAAPGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  KN +       IT       Y+EGCLS+P    +V R+A +TV  +D N +
Sbjct: 61  M---DLSEAKNELRVFINPKITAKCGAQDYEEGCLSVPGIYENVTRAAEVTVEALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++ A GLLA C+QHE+DHL G +F+D+LS LK++ I  K+ K  + R
Sbjct: 118 PFVLEAQGLLAVCIQHEMDHLLGKVFVDYLSPLKQNRIKTKLKKRQRDR 166


>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
 gi|172048436|sp|A5WBG1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
          Length = 176

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ PI+ ++++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAILPILSYPDPRLRTIAEPIKTVDAEIKQLIKDMIETMYDAKGIGLAATQVDRHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++     P VFINPK+    +D   Y+EGCLS+PD    V R   + +  +D +  
Sbjct: 61  MDLSENNDS--PRVFINPKVTPLVEDKKPYEEGCLSVPDVYDSVDRPVKVKIEALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHLNG+LF+D+LSRLK+     K+ K ++ R+
Sbjct: 119 AFEEIAEGLLAVCIQHEMDHLNGVLFVDYLSRLKQTRARDKVKKYLKTRE 168


>gi|326319402|ref|YP_004237074.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376238|gb|ADX48507.1| peptide deformylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 169

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQAVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S+D  V +EGCLS+P     V+RS+ + V+ +D   Q
Sbjct: 61  IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSSAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
          Length = 171

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++K++++I  ++++M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRKIAEPVKKVDAEIQRIVNDMFETMYEEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +   +I  +   +  +EGCLS+P+ RA V R+ ++ ++ +D N +
Sbjct: 61  I---DVSESRNERLVLINPVILETSGETGIEEGCLSVPEQRAFVPRAKWVKIKALDVNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  D LLA C+QHE+DHLNG LFID+LS LKR  I +K+ KL +L+
Sbjct: 118 EFELETDDLLAICIQHEIDHLNGKLFIDYLSALKRQRIRQKIEKLERLK 166


>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 177

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 111/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I PDP L+++  P+ +I  D+  L D+ML  MY   GIGLAA Q+GV+ RLVV+
Sbjct: 1   MIRSILIHPDPRLKKICDPVAEITDDLRRLADDMLATMYDAPGIGLAAPQVGVMRRLVVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D        + P+  INP+++  S+D S Y+EGCLS+P+  A+V+R A + VR+   + +
Sbjct: 61  DCNKQPEAPRRPIAMINPQVVWASEDLSTYEEGCLSLPNVFAEVERPAEVKVRWTGIDGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +     GL ATC+QHE+DHL+G LFID+L  LKR MIT+KM K  + +
Sbjct: 121 EEEEQFSGLWATCVQHEIDHLDGKLFIDYLRPLKRQMITRKMEKFRRAQ 169


>gi|217968557|ref|YP_002353791.1| peptide deformylase [Thauera sp. MZ1T]
 gi|217505884|gb|ACK52895.1| peptide deformylase [Thauera sp. MZ1T]
          Length = 167

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V+ P+ +++ +I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHTVAAPVGRVDDEIRRLIADMAETMYEAPGIGLAATQVDVHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I       V +EGCLS+P     V R+  + VR ++   +
Sbjct: 61  IDVSEDKSGL---MALINPEILERSGEQVCEEGCLSVPGIYEKVSRAERVKVRALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL+G +F+++LS+LK   I  K++K  ++
Sbjct: 118 SFEFEADGLLAVCVQHEIDHLDGKVFVEYLSQLKLGRIKSKLAKKARI 165


>gi|262089743|gb|ACY24837.1| Def peptide deformylase [uncultured organism]
          Length = 169

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+ ++N  +  LID+M E MY   G+GLAA QI V  R+VV
Sbjct: 1   MAILEILEFPDPRLRTIAKPVTEVNDRVRKLIDDMFETMYDAPGVGLAASQINVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +  PMVFINP++     D   Y EGCLS+P +   V+R   I+V  +D + +
Sbjct: 61  IDVSED--KSQPMVFINPEVTVLDSDLHEYDEGCLSVPGFYETVERPEHISVTALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
              I  +GLLA C+QHELDHLNG LF+D++S  KR  I 
Sbjct: 119 SFTIKPEGLLAVCIQHELDHLNGKLFVDYISSFKRTRIR 157


>gi|120613319|ref|YP_972997.1| peptide deformylase [Acidovorax citrulli AAC00-1]
 gi|120591783|gb|ABM35223.1| peptide deformylase [Acidovorax citrulli AAC00-1]
          Length = 169

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ ++  +  L+D+MLE MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLPILCYPDPRLHKVAQPVQVVDDRVRALLDDMLETMYDAQGIGLAATQVDVHERIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  S+D  V +EGCLS+P     V+RS  + V+ +D   Q
Sbjct: 61  IDVSEDRDT--PLVLINPEILWASEDKQVGEEGCLSVPGIYDGVERSTAVRVQALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR  I  KM K  + 
Sbjct: 119 SRVIEAEGLLAICIQHEMDHLLGKVFVEYLSPLKRTRIKTKMLKQQRG 166


>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
 gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++     P+V INP++I      +  +EGCLS+P  RA V R+  I +R +D N +
Sbjct: 61  IDVSENRED--PLVLINPEVIEQCGS-TGIEEGCLSVPGSRALVPRAEQIKIRALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|74316032|ref|YP_313772.1| peptide deformylase [Thiobacillus denitrificans ATCC 25259]
 gi|74055527|gb|AAZ95967.1| formylmethionine deformylase [Thiobacillus denitrificans ATCC
           25259]
          Length = 177

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PD  L  V++P+E +++ I  L+D+M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MARLDILHYPDSRLHTVAKPVEAVDARIRKLVDDMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ +       I         +EGCLS+P     V R+  +TVR +D + +
Sbjct: 61  I---DTSETRDALRVFINPEIVAQSGREESEEGCLSVPGVFDRVTRAERVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G +F+D+LS LKR+ I  K+ K  + 
Sbjct: 118 PFELEADGLLAVCIQHELDHLAGKVFVDYLSPLKRNRIKTKLLKQARE 165


>gi|85713819|ref|ZP_01044809.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
 gi|85699723|gb|EAQ37590.1| formylmethionine deformylase [Nitrobacter sp. Nb-311A]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/172 (45%), Positives = 115/172 (66%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIEK+  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIEKVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      +D      P +FINP+I++ S++ SVY+EGCLSIP+Y  +V+R A + +R+ D
Sbjct: 61  MDLARRDEDGELNPRPRIFINPEILSASEELSVYEEGCLSIPEYYEEVERPARVRIRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK +K  +L
Sbjct: 121 LDGKLHEEDAEGLFATCIQHEIDHLNGVLFVDYLSKLKRDRVMKKFTKAAKL 172


>gi|294625234|ref|ZP_06703874.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294666267|ref|ZP_06731518.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292600462|gb|EFF44559.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292603976|gb|EFF47376.1| peptide deformylase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDERNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 168

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+  ++  I  L+D+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILNILEFPDSRLRTLAKPVAMVDEGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      PMVFINP+I   +D+   YQEGCLS+P +  +V R   + V+ +D + +
Sbjct: 61  MDLSEDRSE--PMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE DHLNG LF+D+LS LKRD I KK+ K  +L
Sbjct: 119 PYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKL 166


>gi|148258522|ref|YP_001243107.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
 gi|158513291|sp|A5ESQ7|DEF_BRASB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146410695|gb|ABQ39201.1| peptide deformylase [Bradyrhizobium sp. BTAi1]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/171 (45%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDKQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           ++ P VFINP+II  SD+ S+Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDAGGETKREPRVFINPEIIAKSDELSIYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVLREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVLKKFTKAAK 171


>gi|317049806|ref|YP_004117454.1| peptide deformylase [Pantoea sp. At-9b]
 gi|316951423|gb|ADU70898.1| peptide deformylase [Pantoea sp. At-9b]
          Length = 170

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++ +++ +  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKTVDAGVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+ ++ VR  D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKGGETGIEEGCLSIPEQRAFVPRAEWVKVRAQDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
 gi|123734488|sp|Q4FVQ4|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
          Length = 184

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY  +GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRMIATPVKEVTAEIKTLITDMIETMYDAEGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEAIDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 AIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|256823831|ref|YP_003147794.1| peptide deformylase [Kangiella koreensis DSM 16069]
 gi|256797370|gb|ACV28026.1| peptide deformylase [Kangiella koreensis DSM 16069]
          Length = 175

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+     ++   ID+M E MY+  GIGLAA Q+ +  +  V
Sbjct: 1   MAILEILEFPDPRLRTKAKPVTDFGDELQQQIDSMFETMYAAPGIGLAATQVNIHKQFFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        +      I         +EGCLS P   A V+R+  I V+ +D + +
Sbjct: 61  IDVSDDKSEP---LVFINPQIVEKRGVEEMEEGCLSFPGVYAKVQRANEIVVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE DH+ G LF+D+LS LKR+ I K + K    
Sbjct: 118 PFEMDTGELLAVCIQHENDHIEGKLFVDYLSPLKRNRIRKMLEKQQNN 165


>gi|261346901|ref|ZP_05974545.1| peptide deformylase [Providencia rustigianii DSM 4541]
 gi|282564968|gb|EFB70503.1| peptide deformylase [Providencia rustigianii DSM 4541]
          Length = 173

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNILHYPDERLRTIAKPVEKVDASIQRIVDDMFETMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +      +  +EGCLSIP+ +  V R+  + VR ++ N +
Sbjct: 61  I---DVSESRSERLVLINPELIDKKGETGIEEGCLSIPEQQGFVARAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 LFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRQR 166


>gi|154250717|ref|YP_001411541.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
 gi|154154667|gb|ABS61884.1| peptide deformylase [Parvibaculum lavamentivorans DS-1]
          Length = 173

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/155 (50%), Positives = 111/155 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS+P+E++++D+  L+D+MLE MY+  GIGLAA+QIGV  +++V
Sbjct: 1   MAIREIITAPDPRLKEVSKPVERVDADLRALMDDMLETMYAAPGIGLAAIQIGVPKQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL        P  FINP+I+  S+D +VY+EGCLS+P++  DV+R A   VRY+D   +
Sbjct: 61  MDLAREGEEPQPRYFINPEILWTSEDVAVYEEGCLSVPEFYEDVERPARCRVRYLDYQGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
            +    D LLATCLQHE+DHL GILFIDHLSR KR
Sbjct: 121 IREEECDDLLATCLQHEMDHLKGILFIDHLSRTKR 155


>gi|260774554|ref|ZP_05883467.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260610460|gb|EEX35666.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 170

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSD--SRDQPMVLINPQIIEKRGE-DGIEEGCLSVPGSRALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFNE 167


>gi|78049482|ref|YP_365657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325926150|ref|ZP_08187511.1| peptide deformylase [Xanthomonas perforans 91-118]
 gi|78037912|emb|CAJ25657.1| peptide deformylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325543495|gb|EGD14917.1| peptide deformylase [Xanthomonas perforans 91-118]
          Length = 170

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q + ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELQADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
 gi|123386822|sp|Q1QET1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
          Length = 184

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR ++ P++++ ++I  LI +M+E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLPILSYPDPRLRTIATPVKEVTAEIKTLITDMIETMYDAQGIGLAASQVDHHIQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINPK+    ++   Y+EGCLS+PD    V+R   + +  +D N  
Sbjct: 61  MDLSEDKDS--PRVFINPKVTPLVEEKQPYEEGCLSVPDVYDKVERPNKVRIEALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                 +GLLA C+QHE+DHLNG++F+D+LSRLK+     K+ K++++R+
Sbjct: 119 KIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLKQTRARDKVRKVLKIRE 168


>gi|149913450|ref|ZP_01901983.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812570|gb|EDM72399.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 174

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P+  ++ D+  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLGDLSDDLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVM 60

Query: 62  DLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP+I+  SD  +VY+EGCLSIP+  A+VKR   + VR++D +  
Sbjct: 61  DCVKGENETPRPLVMFNPEIVASSDVMNVYEEGCLSIPEEYAEVKRPEAVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHLNG LFID+L  +KR MIT++M KL + +
Sbjct: 121 EQTETFDGLWATCVQHEIDHLNGKLFIDYLGPMKRQMITRRMQKLKREQ 169


>gi|27383220|ref|NP_774749.1| peptide deformylase [Bradyrhizobium japonicum USDA 110]
 gi|39930882|sp|Q89BN9|DEF_BRAJA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  147 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/174 (45%), Positives = 116/174 (66%), Gaps = 4/174 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+PIEK+ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++   +  P VFINP++I  S++ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            + +     A+GL ATC+QHE+DHLNG+LF+D+LS+LKRD + KK  K  +  +
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEKAAKRAE 174


>gi|114766694|ref|ZP_01445633.1| peptide deformylase [Pelagibaca bermudensis HTCC2601]
 gi|114541084|gb|EAU44139.1| peptide deformylase [Roseovarius sp. HTCC2601]
          Length = 173

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/170 (48%), Positives = 114/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++   P+  ++  +  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRPILIHPDPRLKKACAPVPDLSDKLRVLADDMLETMYDAPGIGLAAPQIGVLDRLIVL 60

Query: 62  DLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D      P+V  NP+++  SD+ +VY+EGCLSIPD  A+V+R   + V ++D + 
Sbjct: 61  DCAKADDGEAPRPLVMFNPQVVASSDERNVYEEGCLSIPDQYAEVERPKVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 TLQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRDR 170


>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
 gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+  +  ++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MAVLDILKYPDARLHTVAERVPVVDDRIRKLVADMAETMYAAPGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +    VFINP+I   SD    Y+EGCLSIP     V+R   +TV  +  + +
Sbjct: 61  IDITETHDQLQ--VFINPEITWSSDTLQSYEEGCLSIPGIYDKVERPDAVTVTALGLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHLNG LF  HLSRLK++ I +K+ K+ + R
Sbjct: 119 PFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLKQNRIRQKVLKMERER 167


>gi|297182651|gb|ADI18809.1| N-formylmethionyl-tRNA deformylase [uncultured SAR11 cluster
           bacterium HF4000_37C10]
          Length = 185

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/181 (44%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +E+++ D+  L+D+MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALREILTEPNKLLREKSLAVEEVDEDLQKLMDDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D++               RKNPM F+NP+II  S + S+Y+EGCLS+P   A++ RS  
Sbjct: 61  LDIRWRDKSESTSDEKQVERKNPMCFVNPEIIAKSTNNSIYEEGCLSVPGQFAEIARSDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             V+Y+D   Q +   A+G+LATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHVKYLDYYGQPKEFVAEGMLATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|316932090|ref|YP_004107072.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
 gi|315599804|gb|ADU42339.1| peptide deformylase [Rhodopseudomonas palustris DX-1]
          Length = 175

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++ ++I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTTEIRKLADDMFESMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGDGKSDPRAFINPEIVGASAEMNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DHLS+LKR M+ +K  K  +
Sbjct: 121 GNVREEDADGLFATCIQHEIDHLNGVLFVDHLSKLKRAMVIRKFEKAAK 169


>gi|299531890|ref|ZP_07045290.1| peptide deformylase [Comamonas testosteroni S44]
 gi|298720065|gb|EFI61022.1| peptide deformylase [Comamonas testosteroni S44]
          Length = 170

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D +  
Sbjct: 61  IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDESGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|77166461|ref|YP_344986.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|254435308|ref|ZP_05048815.1| peptide deformylase [Nitrosococcus oceani AFC27]
 gi|123593232|sp|Q3J6U0|DEF_NITOC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76884775|gb|ABA59456.1| peptide deformylase [Nitrosococcus oceani ATCC 19707]
 gi|207088419|gb|EDZ65691.1| peptide deformylase [Nitrosococcus oceani AFC27]
          Length = 167

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAAVQ+ V  ++VV
Sbjct: 1   MAILNILHYPDPRLRRKAQPVAAVDKSIKKLADDMLETMYQAPGIGLAAVQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISEDKSSP---LVLINPEIVARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|163744872|ref|ZP_02152232.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
 gi|161381690|gb|EDQ06099.1| peptide deformylase [Oceanibulbus indolifex HEL-45]
          Length = 172

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 116/168 (69%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P+++ PDP L++ + P+  ++ ++  L D+ML  MY   GIGLAA Q+GVL R++V+
Sbjct: 1   MKRPILLHPDPRLKKAAAPVADLSDELRVLGDDMLATMYDAPGIGLAAPQVGVLSRVIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P++  NP+I+  SDD + Y+EGCLSIP+  ADV R A + VR++D + +
Sbjct: 61  DCVKEEGEAPRPLLMFNPEIVASSDDLNTYEEGCLSIPEQFADVTRPAEVEVRWLDRDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 EQREGFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRE 168


>gi|264680865|ref|YP_003280775.1| peptide deformylase [Comamonas testosteroni CNB-2]
 gi|262211381|gb|ACY35479.1| peptide deformylase [Comamonas testosteroni CNB-2]
          Length = 170

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+ +++  I  L+ +MLE MY   GIGLAA QI V  R++V
Sbjct: 1   MAILPILCYPDPRLHKVAKPVAQVDERIQTLVKDMLETMYDAQGIGLAATQIDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PM  INP+I+  S++  + +EGCLS+P     V+RS  + V+ +D N  
Sbjct: 61  IDVSEKRNE--PMALINPEILWASEEKQLGEEGCLSVPGIYDGVERSIAVKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 SREIDAEGMLAICIQHEMDHLLGKVFVEYLSPLKRNRIKTKLVKAQKQ 166


>gi|332171738|gb|AEE20992.1| peptide deformylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 169

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EKI+  I  LI +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVAAPVEKIDGTIKTLISDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               IT  D  ++ +EGCLS+P+  A V+R+  ITV  +D N  
Sbjct: 61  IDVSEKQDNPQ---VFINPEITHMDGTTISEEGCLSVPNNYAKVERAETITVNALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|33591756|ref|NP_879400.1| peptide deformylase [Bordetella pertussis Tohama I]
 gi|33594959|ref|NP_882602.1| peptide deformylase [Bordetella parapertussis 12822]
 gi|33599236|ref|NP_886796.1| peptide deformylase [Bordetella bronchiseptica RB50]
 gi|39931022|sp|Q7VS88|DEF2_BORPE RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|39931030|sp|Q7W1V3|DEF1_BORPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|39931046|sp|Q7WQS9|DEF1_BORBR RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|33565035|emb|CAE39984.1| polypeptide deformylase [Bordetella parapertussis]
 gi|33571399|emb|CAE44880.1| polypeptide deformylase [Bordetella pertussis Tohama I]
 gi|33575282|emb|CAE30745.1| polypeptide deformylase [Bordetella bronchiseptica RB50]
          Length = 170

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V INP+I   SD+   Y+EGCLS+P    +V+R+A I  + +D   Q
Sbjct: 61  IDVSEEGNDLR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLLA C+QHE+DHL+G +F+++LS LK++ I  K+ K  +  +
Sbjct: 119 PYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAEREAE 168


>gi|117928486|ref|YP_873037.1| peptide deformylase [Acidothermus cellulolyticus 11B]
 gi|158512367|sp|A0LUE1|DEF_ACIC1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|117648949|gb|ABK53051.1| peptide deformylase [Acidothermus cellulolyticus 11B]
          Length = 180

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI +++E M    G+GLAA QIGV  R+ V
Sbjct: 1   MAVRPIRLFGDPVLRTPAEPVTDFDKELRVLIKDLIETMQDAPGVGLAAPQIGVSLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+                 +  S++     EGCLS+P     +KR+     +  +   +
Sbjct: 61  YDVDGVVGHLV------NPSLDLSEEQQDGDEGCLSLPGLSYPLKRAKRAVAKGFNEFGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I+    LLA C+QHE DHL+G+LFID L   +R +  + + +
Sbjct: 115 PVILEGSDLLARCVQHETDHLDGVLFIDRLDPEQRKLAMRAIRE 158


>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
 gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
          Length = 176

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/170 (50%), Positives = 121/170 (71%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L+++  P+  ++ D+  L D+MLE MY   GIGLAA Q+G+L+RL+V+
Sbjct: 4   MKRPILIHPDPRLKKLCDPVADLSDDLRTLADDMLETMYDAPGIGLAAPQVGILHRLIVL 63

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D   QD+     P+V INP+I+  SD+ SVY+EGCLSIPD  ADV+R   + V ++D + 
Sbjct: 64  DCAKQDNGETPRPLVMINPRILASSDERSVYEEGCLSIPDQYADVERPKMVEVEWLDRDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 124 KLQKEEFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMVKLKRER 173


>gi|119475268|ref|ZP_01615621.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
 gi|119451471|gb|EAW32704.1| peptide deformylase [marine gamma proteobacterium HTCC2143]
          Length = 168

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++ ++ ++  I  L+D+ML  MY   GIGLAA QI +  R+VV
Sbjct: 1   MTILQILEFPDPRLRTIAKTVDTVDESIRTLLDDMLVTMYDASGIGLAATQINIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P VFINP+II        Y+EGCLS+P +   V R   I V+ +D +  
Sbjct: 61  IDVSE--TGDQPQVFINPEIIILDGPDHEYEEGCLSVPGFHETVSRPEKIIVKALDRDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  +GLLA C+QHE+DHLNG LF+DH+S+LKR  I  K+ K  + 
Sbjct: 119 PFELQPEGLLAVCIQHEVDHLNGKLFVDHISQLKRKRIRAKLEKQHKQ 166


>gi|109896355|ref|YP_659610.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
 gi|109698636|gb|ABG38556.1| peptide deformylase [Pseudoalteromonas atlantica T6c]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P++KI+S I  L+ +MLE M   +GIGLAA QI V  R+VV
Sbjct: 1   MAILDVLRFPDERLRTVATPVDKIDSSIKTLVSDMLETMKDENGIGLAATQINVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               IT  D  ++ +EGCLS+P+  A V+R+  +TV+ +D N  
Sbjct: 61  IDVSEEQD---KPQVFINPEITHMDGTTISEEGCLSVPNNYAKVERAEKVTVKALDENGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 AFTLDADGLLAICIQHELDHLKGKLFVDYLSPLKRQRIRTKLEKEARL 165


>gi|311109268|ref|YP_003982121.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
 gi|310763957|gb|ADP19406.1| peptide deformylase 2 [Achromobacter xylosoxidans A8]
          Length = 170

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I   SDD+ +Y+EGCLS+P    DV+R++ I  + +D + +
Sbjct: 61  IDVSED--SNQLLVLINPEITWHSDDYKIYEEGCLSVPGVYDDVERASRIRCKALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSSLKQNRIKTRLKKAERE 166


>gi|194291227|ref|YP_002007134.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
 gi|193225062|emb|CAQ71073.1| peptide deformylase [Cupriavidus taiwanensis LMG 19424]
          Length = 168

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERAR 167


>gi|86747799|ref|YP_484295.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
 gi|123099181|sp|Q2J2C6|DEF_RHOP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|86570827|gb|ABD05384.1| peptide deformylase [Rhodopseudomonas palustris HaA2]
          Length = 175

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 114/169 (67%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+ ++  +I  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIILPDKRLREISKPVAEVTPEIRKLADDMFESMYEAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   + +P  FINP+I+  S + +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDIVRKEGNGKSDPRAFINPEIVGASAELNVYEEGCLSIPEYYAEVERPKTVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q +   ADGL ATC+QHE+DHLNG+LF+DH+S+LK+ M+ +K  K  +
Sbjct: 121 GQVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKKAMVVRKFEKAAK 169


>gi|221135272|ref|ZP_03561575.1| peptide deformylase [Glaciecola sp. HTCC2999]
          Length = 169

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+  IN  I  L+ +M E M +  G+GLAA Q+ V  +++V
Sbjct: 1   MAVLTVLTFPDERLRTKAKPVNDINDSIRTLVADMFETMKAERGVGLAATQVNVHQQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D               +       + +EGCLS+P+  A V+R+ +I V  ++ + +
Sbjct: 61  MDVSDDQDTPL---VFINPKVIEQRGTKINEEGCLSVPNNYAKVERAEWIKVSALNEHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LF+D+LS LKR  I KK+ K  ++
Sbjct: 118 EFTMEAEGLLAVCIQHEMDHLQGKLFVDYLSSLKRQRIMKKLEKEARI 165


>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 176

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/170 (53%), Positives = 122/170 (71%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K LVI PDPILR VS+ +E+I+  I  L D+MLE MY+  GIGLAAVQ+GV  R++V
Sbjct: 1   MSIKSLVILPDPILREVSKLVERIDPIIQKLADDMLETMYNAQGIGLAAVQVGVPLRMLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      KNP+V INP+I+  SD+ SVY+EGCLSIPDY A+V+R   + + Y D   +
Sbjct: 61  VDIHSKDAPKNPLVIINPEILWVSDERSVYKEGCLSIPDYFAEVERPKCLRMCYRDREGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A+ LLATCLQHE+DHLNG LFIDH+S+ KRDM+ +K  K  ++++
Sbjct: 121 QVEIEANDLLATCLQHEIDHLNGCLFIDHISKTKRDMVIRKFKKRAKMQN 170


>gi|89074760|ref|ZP_01161218.1| peptide deformylase [Photobacterium sp. SKA34]
 gi|89049524|gb|EAR55085.1| peptide deformylase [Photobacterium sp. SKA34]
          Length = 169

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      +    IT        +EGCLS+P  R  V R+A ++V  +D N +
Sbjct: 61  IDVSEERNQPM---VLVNPKITEEHGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|166713738|ref|ZP_02244945.1| peptide deformylase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|126738021|ref|ZP_01753742.1| peptide deformylase [Roseobacter sp. SK209-2-6]
 gi|126720518|gb|EBA17223.1| peptide deformylase [Roseobacter sp. SK209-2-6]
          Length = 172

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 115/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++I PDP L++   P+  ++  +  L D+MLE MY+  GIGLAA QIG++ RL+V+
Sbjct: 1   MKHPILIHPDPRLKKTCVPVADLSDKLRILADDMLETMYAAPGIGLAAPQIGIMQRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+I+  S++ +VY+EGCLSIP+  A+V R   + VR++D +  
Sbjct: 61  DCEKEEGSSGKPLVMFNPEILASSEETNVYEEGCLSIPEQFAEVTRPKVVDVRWIDRDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 EQSETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|113869635|ref|YP_728124.1| peptide deformylase [Ralstonia eutropha H16]
 gi|113528411|emb|CAJ94756.1| formylmethionine deformylase [Ralstonia eutropha H16]
          Length = 168

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVAAVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDQLQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK + I  K+ K  + R
Sbjct: 119 SFELEADDLLAVCIQHEIDHLRGKVFVEYLSPLKLNRIKSKLQKRERTR 167


>gi|117620047|ref|YP_854786.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561454|gb|ABK38402.1| peptide deformylase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      +  +EGCLS+P  RA V R+ ++ VR +D + +
Sbjct: 61  IDVSENREDPL---VLINPEIIEQAGSTGIEEGCLSVPGSRALVPRAEWVKVRALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 AFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
 gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
          Length = 171

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P+  I      +ID+ML  MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MTILTILRFPDPRLRTKAQPVTDITDATATIIDDMLATMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   +  P++FINP+II  S++ S+ +EGCLS+P   A V R    TV+ +D + +
Sbjct: 61  MDTSEDNDQ--PIIFINPEIIATSNETSINEEGCLSVPGTYAKVDRHDACTVKALDRHGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + A  L + C+QHELDHL G+LF+D+LS LKR  I KK+ K  +
Sbjct: 119 EFSLNATELQSICIQHELDHLKGVLFVDYLSPLKRQRIQKKLEKEAK 165


>gi|170718226|ref|YP_001785248.1| peptide deformylase [Haemophilus somnus 2336]
 gi|189083072|sp|B0UWZ5|DEF_HAES2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|168826355|gb|ACA31726.1| peptide deformylase [Haemophilus somnus 2336]
          Length = 170

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K   + +    I  S   +  +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  I---DIEGTKENQIVLINPKILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 EFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|114800420|ref|YP_759242.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
 gi|123028362|sp|Q0C4V1|DEF_HYPNA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|114740594|gb|ABI78719.1| peptide deformylase [Hyphomonas neptunium ATCC 15444]
          Length = 176

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  PDP L++VS+P+E  +  DI  L+D+MLE MY   GIGLAA+QIGV  R++
Sbjct: 1   MAIREILTVPDPRLKQVSKPVEGGVTDDIRALMDDMLETMYDAPGIGLAAIQIGVPLRVI 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+DL        P  F+NP+I+   ++   Y+EGCLS+PD    V+RSA   +RY+D + 
Sbjct: 61  VMDLAREGEEPAPRYFVNPEILETIEEKKPYEEGCLSVPDIFDQVERSARCRIRYLDYDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +    +A+ L A C+QHE+DHL G LFID+LSRLKRD    K+ K  
Sbjct: 121 KQVDEWAEDLYAVCIQHEMDHLEGTLFIDYLSRLKRDRAIDKVKKAK 167


>gi|187476716|ref|YP_784740.1| peptide deformylase [Bordetella avium 197N]
 gi|115421302|emb|CAJ47807.1| peptide deformylase [Bordetella avium 197N]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++V
Sbjct: 1   MALLPILRYPDPRLHKVAKPVAVVDDRIRQLVKDMAETMYDAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +       INP+I   S++  VY+EGCLS+P    +VKR+A I  + +D + +
Sbjct: 61  IDVSEDGNEL--RALINPEITWMSEELQVYEEGCLSVPGIYDEVKRAARIRCKALDTDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHE+DHL+G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 VFEFEAEGLLAVCVQHEIDHLDGKVFVEYLSVLKQNRIKTRLKKAERE 166


>gi|317401262|gb|EFV81903.1| peptide deformylase 1 [Achromobacter xylosoxidans C54]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +V INP+I   SDD+ +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSEE--SNQLLVLINPEITWRSDDYKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PFEFDADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166


>gi|113460190|ref|YP_718247.1| peptide deformylase [Haemophilus somnus 129PT]
 gi|123131908|sp|Q0I181|DEF_HAES1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|112822233|gb|ABI24322.1| peptide deformylase [Haemophilus somnus 129PT]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+   + ++   IDNM E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNVLIYPDERLKTVAEPVSVFDEELQTFIDNMFETMYHEEGIGLAATQVNVHKRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K   + +    I  S   +  +EGCLS+P  R  V R   + V+  +   +
Sbjct: 61  I---DIEGTKENQIVLINPEILESFGETGIEEGCLSLPGLRGFVPRKETVKVKAQNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             ++ ADGLLA C+QHE+DHLNGI+F DHLS LKR  + +K+ KL + 
Sbjct: 118 DFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQKQ 165


>gi|71276449|ref|ZP_00652725.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71901278|ref|ZP_00683377.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|170731000|ref|YP_001776433.1| peptide deformylase [Xylella fastidiosa M12]
 gi|238687947|sp|B0U4M4|DEF_XYLFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|71162765|gb|EAO12491.1| Formylmethionine deformylase [Xylella fastidiosa Dixon]
 gi|71728969|gb|EAO31101.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|167965793|gb|ACA12803.1| Peptide deformylase [Xylella fastidiosa M12]
          Length = 170

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +V+D+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVVDVSEEKNA--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|294678913|ref|YP_003579528.1| peptide deformylase [Rhodobacter capsulatus SB 1003]
 gi|294477733|gb|ADE87121.1| peptide deformylase-2 [Rhodobacter capsulatus SB 1003]
          Length = 178

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L+++  P+  ++  I  L D+MLE MY   G+GLAA QIGV+ R+ V
Sbjct: 3   MTTRPILIHPDPRLKKLCDPVAALDDTIRQLADDMLETMYDAPGVGLAAPQIGVMSRIFV 62

Query: 61  IDLQDHAHRKNP-MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D           MV INP+I   S++ +V++EGCLS+P+  ADV R   + +R++  + 
Sbjct: 63  MDCAKEKTGFPEAMVMINPEITWVSEEKNVHEEGCLSLPEQYADVTRPKEVRMRWLGLDG 122

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q      DGL ATC QHELDHLNG LFIDHL  LKR M+T+K+ KL + 
Sbjct: 123 QMHEEQFDGLWATCAQHELDHLNGKLFIDHLGPLKRQMVTRKLEKLKRE 171


>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
          Length = 190

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 21/187 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE--KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS+P+E  + + D+  L+D+M E MY+ +GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSQPVEAGEFDDDLRTLVDDMFETMYAANGIGLAAIQVGVPKRI 60

Query: 59  VVIDLQDHAHRKNPMVF-------------------INPKIITFSDDFSVYQEGCLSIPD 99
           +VIDLQ       P+                     INP+I+  +++ + YQEGCLS+PD
Sbjct: 61  LVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVFINPEILDPNEELATYQEGCLSVPD 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TVR+ D + +      +GLLATC+QHE+DHL GILFIDHLSRLKR M  
Sbjct: 121 IYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQHEMDHLEGILFIDHLSRLKRQMAL 180

Query: 160 KKMSKLV 166
           KK+ KL 
Sbjct: 181 KKLKKLR 187


>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
 gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
          Length = 168

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L +V++P+E ++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MAKLDILTYPDPRLHKVAKPVEVVDDRIRQLVKDMAETMYEAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP++   S++  V++EGCLS+P+    V+R   + VR +D   +
Sbjct: 61  IDISESRDELM--VFINPEVTWASENRKVWEEGCLSVPEVYDRVERPDRVKVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL+G +F+++LS LK   I  K+ K V+ R
Sbjct: 119 AFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLKLQRIKSKLQKRVRSR 167


>gi|71898893|ref|ZP_00681060.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
 gi|71731305|gb|EAO33369.1| Formylmethionine deformylase [Xylella fastidiosa Ann-1]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSEEKNV--PMVFINPEIVTKEGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|145300986|ref|YP_001143827.1| peptide deformylase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|158514058|sp|A4ST57|DEF_AERS4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|142853758|gb|ABO92079.1| polypeptide deformylase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E    ++ +++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAILDVLRFPDERLRTVAAPVETFTPELQHIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      +  +EGCLS+PD+RA V R+ ++ VR +D N Q
Sbjct: 61  IDVSENREDPL---VLINPEILEQAGSTGIEEGCLSVPDHRALVPRAEWVKVRALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ + 
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMARE 165


>gi|21244525|ref|NP_644107.1| peptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
 gi|39931168|sp|Q8PG20|DEF2_XANAC RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 170

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  + P+   E  +     L+D+M   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDISDEKNL--PQVFVNPEIVSKQGEQLYQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
 gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
          Length = 172

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P+  ++  +  L  +M E MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVTDVSDALRKLSQDMFETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+  +NP+I  FSD  SVY+EGCLSIPD  ADV R A + VR+MD +  
Sbjct: 61  DCVKDEGATPRPIAMLNPEITAFSDQTSVYEEGCLSIPDQFADVTRPAEVEVRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHKEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|90581176|ref|ZP_01236975.1| peptide deformylase [Vibrio angustum S14]
 gi|90437697|gb|EAS62889.1| peptide deformylase [Vibrio angustum S14]
          Length = 169

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 102/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLHVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      +    IT        +EGCLS+P  R  V R+A ++V  +D + +
Sbjct: 61  IDVSEERNQPM---VLVNPEITEERGEDGIEEGCLSVPTARGFVPRAAGVSVTALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                ADGLLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYSFKADGLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|15837528|ref|NP_298216.1| peptide deformylase [Xylella fastidiosa 9a5c]
 gi|28199634|ref|NP_779948.1| peptide deformylase [Xylella fastidiosa Temecula1]
 gi|182682379|ref|YP_001830539.1| peptide deformylase [Xylella fastidiosa M23]
 gi|54036955|sp|P63918|DEF_XYLFT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040743|sp|P63917|DEF_XYLFA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691097|sp|B2I8S4|DEF_XYLF2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase [Xylella fastidiosa 9a5c]
 gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella fastidiosa Temecula1]
 gi|182632489|gb|ACB93265.1| peptide deformylase [Xylella fastidiosa M23]
 gi|307578661|gb|ADN62630.1| peptide deformylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 170

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +   E ++S    L+D+M E MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   PMVFINP+I+T   D    +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDVSEEKNV--PMVFINPEIVTREGDQVFQEG-CLSVPGIHADVTRALSIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   Q + A+GLLA C+QHE+DHL+G LFID+LS LKRDM+ +K+ K  +
Sbjct: 118 HGDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRR 167


>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
 gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 108/156 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PDP+L+   R ++ ++ ++  LID+M + MY   G+GLAA Q+GV  R++V
Sbjct: 1   MAILPIIWAPDPVLKTKCRSVDVVDDEVRRLIDDMFQTMYFAPGVGLAAPQVGVTKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+     +  P+  +NP+I+  SD   +Y+EGCLS+P+  ADV+R++ + VRY+D +  
Sbjct: 61  VDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGCLSLPELYADVERASHVKVRYLDRDGA 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
            Q I  +GLLA CLQHE+DH++G+LF+DH+S LKR+
Sbjct: 121 EQKIEGEGLLAVCLQHEIDHIDGVLFVDHISALKRN 156


>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
 gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           tunicata D2]
          Length = 167

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ +++  I  ++ +M + MY   GIGLAA Q  +  R+VV
Sbjct: 1   MAFLEVLRFPDERLRTIAKPVTQVDDSIKKIVADMFDTMYEESGIGLAATQANIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +     +    IT  D  ++ +EGCLS+P+  A V R+  +TV+ ++ + Q
Sbjct: 61  IDVTEDKSDQL---VLINPEITKKDGSTISEEGCLSVPNSYAKVDRAETVTVKALNLDGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LF+D+LS LKRD I KK+ K  ++
Sbjct: 118 EFSLDADGLLAICIQHELDHLQGKLFVDYLSPLKRDRIRKKLEKEAKM 165


>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
 gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
          Length = 181

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 108/167 (64%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L+++  P+ KI  +I  L ++MLE MY   GIGLAA Q+GV  +L+V+
Sbjct: 1   MKRTILIHPDPRLKKICEPVPKITVEIGRLAEDMLETMYDAPGIGLAAPQLGVTKQLIVM 60

Query: 62  DLQDHAH-RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          PM   NP +   S+D S Y+EGCLS+P+  A+++R + + VR+   +  
Sbjct: 61  DCVKDPALTARPMAMFNPVVTWASEDLSTYEEGCLSLPNQYAEIERPSEVRVRWTGLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q  +  GL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL +
Sbjct: 121 EQEEHFTGLWATCVQHEIDHLSGKLFIDYLRPLRRQMITRKMEKLKR 167


>gi|183600719|ref|ZP_02962212.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
 gi|188019699|gb|EDU57739.1| hypothetical protein PROSTU_04315 [Providencia stuartii ATCC 25827]
          Length = 174

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVEKVDAEIQQIVDDMFETMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+    V R+  + VR +D N  
Sbjct: 61  IDVSETRDQRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEHVKVRALDYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL ++R
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRMR 166


>gi|152981308|ref|YP_001351833.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
 gi|151281385|gb|ABR89795.1| polypeptide deformylase [Janthinobacterium sp. Marseille]
          Length = 178

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+   +  I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDPRLHKVAKPVSVFDERIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +         +INP+II  S +  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSETHTELR--AYINPEIIWASPEMQVYDEGCLSVPGVYDGVERHAKVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|146337885|ref|YP_001202933.1| peptide deformylase [Bradyrhizobium sp. ORS278]
 gi|158514293|sp|A4YLB9|DEF_BRASO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146190691|emb|CAL74695.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Bradyrhizobium
           sp. ORS278]
          Length = 175

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VS+P+EK+  +I  L+D+M + MY   GIGLAA+Q+    R++ 
Sbjct: 1   MSLREIIILPDRQLRLVSKPVEKVTPEIRQLVDDMFQTMYDAPGIGLAAIQVAQPLRVIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +           ++ P VFINP+II  SD+ SVY+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLAKPDSGGETKREPRVFINPEIIAKSDELSVYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   +   A+GL ATC+QHE+DHLNG+LFID+LS+LKRD + KK +K  +
Sbjct: 121 LDGVVREEDAEGLYATCIQHEIDHLNGVLFIDYLSKLKRDRVMKKFTKAAK 171


>gi|163733890|ref|ZP_02141332.1| peptide deformylase [Roseobacter litoralis Och 149]
 gi|161393001|gb|EDQ17328.1| peptide deformylase [Roseobacter litoralis Och 149]
          Length = 175

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++++ P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+ V+
Sbjct: 4   MKRSIILHPDPRLKKIAAPVADISDELRQLGDDMLETMYDAPGIGLAAPQVGILQRVFVM 63

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P+V  NP++I  SD+ +VY+EGCLSIP+  ADV R A + +R+MD +  
Sbjct: 64  DCVKEPGETPRPIVMFNPEVIATSDETNVYEEGCLSIPEQFADVTRPADVELRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  LKR MIT+KM KL + 
Sbjct: 124 EQTEVFTGLWATCAQHEIDHLDGKLFIDYLRPLKRQMITRKMVKLKRE 171


>gi|304392301|ref|ZP_07374242.1| peptide deformylase [Ahrensia sp. R2A130]
 gi|303295405|gb|EFL89764.1| peptide deformylase [Ahrensia sp. R2A130]
          Length = 193

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/186 (43%), Positives = 123/186 (66%), Gaps = 18/186 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PDPILR  S+ +E+++ ++   +D+M + MY   GIGLAAVQ+G   R+ V
Sbjct: 1   MALLPIVHLPDPILRVRSQEVERVDDELRKFLDDMADTMYDAPGIGLAAVQVGEPRRIFV 60

Query: 61  IDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRA 102
           +D  + A                    ++P+  INPKI+TFSD+ S+Y+EGCLSIPDY A
Sbjct: 61  VDCSERAEAEEEAEDDAPIRAEAVEEKRDPIFLINPKIVTFSDEPSMYEEGCLSIPDYYA 120

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
           +V+R A   + ++D + + Q + ADGLL+TC+QHE+DHL+G LFIDH+S+LK++M+ KK 
Sbjct: 121 EVERPATCRIEFLDRDGKEQSLEADGLLSTCIQHEMDHLDGTLFIDHISKLKKNMVIKKF 180

Query: 163 SKLVQL 168
           +K+ + 
Sbjct: 181 TKIAKQ 186


>gi|294638020|ref|ZP_06716280.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
 gi|291088812|gb|EFE21373.1| peptide deformylase [Edwardsiella tarda ATCC 23685]
          Length = 171

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVNEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLS+P+ RA V R+  ITVR +D + +
Sbjct: 61  IDISENRDQRL---VLINPELLQKGGETGIEEGCLSVPEQRALVPRAETITVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|89902619|ref|YP_525090.1| peptide deformylase [Rhodoferax ferrireducens T118]
 gi|89347356|gb|ABD71559.1| peptide deformylase [Rhodoferax ferrireducens T118]
          Length = 169

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+  ++  +  LI +MLE MY   GIGLAA QI V  RL+V
Sbjct: 1   MALLPILCYPDPKLHTVAKPVSTVDVRVQTLIVDMLETMYEAKGIGLAATQINVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+V INP+++  S +  + +EGCLS+P     V+R   +TV  +D   Q
Sbjct: 61  VDVSEERDA--PLVLINPQLVWSSAETHLNEEGCLSVPGIYDGVERFDAVTVTALDGQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            ++I A+GLLA C+QHE+DHL G +F+++LS LKR+ I KKM K  + 
Sbjct: 119 SRLIEAEGLLAVCIQHEMDHLQGKVFVEYLSPLKRNRIKKKMLKSQRE 166


>gi|260771088|ref|ZP_05880016.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|260613977|gb|EEX39168.1| peptide deformylase [Vibrio furnissii CIP 102972]
 gi|315178587|gb|ADT85501.1| peptide deformylase [Vibrio furnissii NCTC 11218]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +I         +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  I---DISETRDEPMVLINPVILEKRGEDGIEEGCLSVPGARALVARAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 EYTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKEKLEKIKRFND 167


>gi|119896391|ref|YP_931604.1| peptide deformylase [Azoarcus sp. BH72]
 gi|119668804|emb|CAL92717.1| probable peptide deformylase [Azoarcus sp. BH72]
          Length = 167

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L R + P++ ++ D+  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHRRAAPVDTVDDDVRKLIDDMAETMYEAPGIGLAATQVDVHRRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I   D   V +EGCLS+P     V R+  +TVR +D N  
Sbjct: 61  IDISEDKSGL---MALINPQILERDGEQVCEEGCLSVPGVYEKVTRAERVTVRALDRNGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  K++K  ++
Sbjct: 118 PFEVAAEGLLAVCIQHEIDHLDGKVFVEYLSPLKLGRIKSKLAKKARI 165


>gi|329295654|ref|ZP_08252990.1| peptide deformylase [Plautia stali symbiont]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P+  +N+D+  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVAAVNADVQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGMEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHELDHL+G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 SFELETDGLLAICIQHELDHLDGKLFIDYLSPLKRQRIKQKLEKLARQ 165


>gi|163859048|ref|YP_001633346.1| peptide deformylase [Bordetella petrii DSM 12804]
 gi|163262776|emb|CAP45079.1| polypeptide deformylase [Bordetella petrii]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L + ++P+  ++  I  L+ +M + MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLSILHYPDPRLHKKAKPVAVVDDRIRKLVRDMADTMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V INP+I   SD+   Y+EGCLS+P    +V+R+A I  R +D +  
Sbjct: 61  IDVSEEGNELR--VLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRYRALDADGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL+G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PYEAEAEGLLAVCVQHELDHLDGKVFVEYLSSLKQNRIKTKLKKAERE 166


>gi|293602354|ref|ZP_06684800.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
 gi|292819116|gb|EFF78151.1| peptide deformylase [Achromobacter piechaudii ATCC 43553]
          Length = 170

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + ++P+ +++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKKAKPVAEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ + ++    +  INP+I   SDD  +Y+EGCLS+P    +V+R++ I  + +D + +
Sbjct: 61  IDVSEDSNEL--LALINPEITWRSDDHKIYEEGCLSVPGIYDEVERASRIRCKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F+++LS LK++ I  K+ K  + 
Sbjct: 119 PFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLKQNRIKTKLKKAERE 166


>gi|90422323|ref|YP_530693.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
 gi|123089811|sp|Q21B62|DEF_RHOPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|90104337|gb|ABD86374.1| peptide deformylase [Rhodopseudomonas palustris BisB18]
          Length = 175

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 115/169 (68%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR +S+P+E +++++  L D+M E MY   GIGLAA+Q+    RL+ 
Sbjct: 1   MALREIIIIPDKQLRLISKPVETVSAEVRRLADDMFETMYEAPGIGLAAIQVAQPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++      P  FINP++I+ S++ +VY+EGCLSIP+Y A+V+R   + +RY D +
Sbjct: 61  MDLVRKEGNSLTEPRAFINPEVISASEEMNVYEEGCLSIPEYYAEVERPKQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +   ADGL ATC+QHE+DHLNG+LF+DH+S+LKR M+ +K  K  +
Sbjct: 121 GNVKEEDADGLFATCIQHEIDHLNGVLFVDHISKLKRAMVMRKFEKAAK 169


>gi|300721398|ref|YP_003710669.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297627886|emb|CBJ88432.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 170

 Score =  146 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAEIQRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +   ++       +     +  +EGCLS+P+ R  V R   I ++ +D + Q
Sbjct: 61  IDVSEDRKQLLVLINPELLNES---GETGIEEGCLSVPEQRGFVPRFEQIKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKIDRLR 166


>gi|92119150|ref|YP_578879.1| peptide deformylase [Nitrobacter hamburgensis X14]
 gi|122990031|sp|Q1QH78|DEF_NITHX RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|91802044|gb|ABE64419.1| peptide deformylase [Nitrobacter hamburgensis X14]
          Length = 175

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 4/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR VSRPIE +  +I  L D+M E MY   GIGLA +QI    R++ 
Sbjct: 1   MAIREIIILPDKQLRLVSRPIETVTPEIRKLADDMFETMYDAPGIGLAGIQIAQPLRIIT 60

Query: 61  I----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           +      ++      P +FINP+I++ S++ S Y+EGCLSIP+Y  +V+R A + VR+ D
Sbjct: 61  MDLARRDEEGELTPRPRIFINPEILSASEELSTYEEGCLSIPEYYEEVERPARVRVRFTD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +     A+G+ ATC+QHE+DHLNG+LF+DH+S+LKRD + KK +K  +L
Sbjct: 121 LDGKVHEEDAEGIYATCIQHEIDHLNGVLFVDHISKLKRDRVVKKFTKAAKL 172


>gi|268593574|ref|ZP_06127795.1| peptide deformylase [Providencia rettgeri DSM 1131]
 gi|291310851|gb|EFE51304.1| peptide deformylase [Providencia rettgeri DSM 1131]
          Length = 173

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P++K+++ I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTIAKPVDKVDASIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +    +     +    +      +  +EGCLSIP+    V R+  + VR ++ N +
Sbjct: 61  IDVSETRDDRL---VLINPELLDKSGETGIEEGCLSIPEQHGFVPRAEQVKVRALNYNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|258622990|ref|ZP_05718005.1| peptide deformylase [Vibrio mimicus VM573]
 gi|258584773|gb|EEW09507.1| peptide deformylase [Vibrio mimicus VM573]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|157959861|ref|YP_001499895.1| peptide deformylase [Shewanella pealeana ATCC 700345]
 gi|157844861|gb|ABV85360.1| peptide deformylase [Shewanella pealeana ATCC 700345]
          Length = 199

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N  +   ID+M E MY   GIGLAA Q+   ++L+V
Sbjct: 30  MSLLKVLRFPDERLRTVAQPITEFNPALQTQIDDMFETMYEEKGIGLAATQVDYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           IT        +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 90  MDLQDEVERPK---VFINLEITAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGK 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L
Sbjct: 147 EFTLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194


>gi|212709012|ref|ZP_03317140.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
 gi|212688378|gb|EEB47906.1| hypothetical protein PROVALCAL_00044 [Providencia alcalifaciens DSM
           30120]
          Length = 173

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR V++P+EK+++ I  +ID+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLNVLHYPDERLRTVAKPVEKVDASIQRIIDDMFDTMYDEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +    +   +  +  +EGCLS+P+    V R+  + VR ++ N  
Sbjct: 61  I---DVSESRNERLVLINPELLNKEGETGIEEGCLSVPEQHGFVPRAEKVKVRALNYNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +LR
Sbjct: 118 AFELEADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDRLR 166


>gi|330432195|gb|AEC17254.1| peptide deformylase [Gallibacterium anatis UMN179]
          Length = 171

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+EK++ +I   IDNM E MY  +GIGLAA Q+    R++ 
Sbjct: 1   MAILDVLCFPDERLRTVAAPVEKVDDEIREFIDNMFETMYQQEGIGLAATQVNRHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  SD  +  +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  IDVEGDKSNQL---VLINPEIVESDGETGIEEGCLSVPGFRGLVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + A  LLA C+QHE+DHLNG++F+D+LS LKR+ I  K+ K  +  +
Sbjct: 118 PFTLEASDLLAICIQHEIDHLNGVMFVDYLSPLKRNRIKDKLVKYKKQLE 167


>gi|258626114|ref|ZP_05720965.1| peptide deformylase [Vibrio mimicus VM603]
 gi|262166814|ref|ZP_06034551.1| peptide deformylase [Vibrio mimicus VM223]
 gi|262172812|ref|ZP_06040490.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|258581640|gb|EEW06538.1| peptide deformylase [Vibrio mimicus VM603]
 gi|261893888|gb|EEY39874.1| peptide deformylase [Vibrio mimicus MB-451]
 gi|262026530|gb|EEY45198.1| peptide deformylase [Vibrio mimicus VM223]
          Length = 169

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
 gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
          Length = 171

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+      +  L+D+M + MY   GIGLAA QI    +++V
Sbjct: 1   MAVREVLRFPDERLRTVAEPVTDFGPALQQLVDDMFDTMYEERGIGLAATQINEHVQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +               I         +EGCLS+P   A V+R+  +     D    
Sbjct: 61  MDHSEDRSEPK---VFINPKIIEEKGHFTNEEGCLSVPGVYAKVERAEHVVFEAQDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LL+ C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 PFTVEADELLSICIQHEMDHLLGKLFVDYLSPLKRQRIKQKLEKQARL 165


>gi|254447455|ref|ZP_05060921.1| peptide deformylase [gamma proteobacterium HTCC5015]
 gi|198262798|gb|EDY87077.1| peptide deformylase [gamma proteobacterium HTCC5015]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ FPDP LR+  +P+E+++ ++   ID+M E MY   GIGLAA+Q+    RL++
Sbjct: 1   MAKLEILHFPDPRLRQACKPVEQVDDELRQFIDDMFETMYDAPGIGLAAIQVNRHERLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ +     NP+VFINP+II         +  CLS+P +  +V+R+  I V+ +D + +
Sbjct: 61  TDVSED--ASNPLVFINPEIIEADGVEVTQEG-CLSVPGFYENVERAEHIVVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  DGL A C+QHE+DHL+G LF+D+LS LKR+ I
Sbjct: 118 AFEMACDGLQAVCVQHEIDHLDGKLFVDYLSPLKRNRI 155


>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
          Length = 173

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 110/169 (65%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++I+P P+L++ +RP+ K++  +  L+ +M E MY+ DG+GLAA Q+G+L R++V+
Sbjct: 1   MVREILIWPHPVLKQKARPVAKVDDAVRALVKDMFETMYAADGVGLAAPQVGILQRIIVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D         P+  INP+I+      +  +  CLSIP    DV R+A +TV+++D + Q 
Sbjct: 61  DTTPRQPDSKPLAMINPEIVGMEGATTYTEG-CLSIPGEAEDVDRAAIVTVKFLDVDGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           Q +  D LLA  +QHE DHL+G +F+DH+S LKR++I K+M +L   R+
Sbjct: 120 QTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLKREIIRKRMKRLKTERE 168


>gi|115522683|ref|YP_779594.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
 gi|122297684|sp|Q07TX0|DEF_RHOP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|115516630|gb|ABJ04614.1| peptide deformylase [Rhodopseudomonas palustris BisA53]
          Length = 180

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 110/169 (65%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++I PD  LR  S+P+E ++ ++  L D+M E MY   GIGLAA+QI    RL+ 
Sbjct: 1   MALREIIIVPDKQLRLTSKPVETVSPEVRKLADDMFETMYDAPGIGLAAIQIAEPVRLIT 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +D   ++   +  P  FINP+II  S +  VY+EGCLSIP+Y A+V+R A + +RY D +
Sbjct: 61  MDLVRKEGNGKTEPRAFINPEIIGASTETRVYEEGCLSIPEYYAEVERPAQVRIRYTDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  ADGL ATC+QHE+DHLNG LFIDH+SRLKR ++ +K  K  +
Sbjct: 121 GHVHEEDADGLFATCIQHEIDHLNGTLFIDHISRLKRALVMRKFEKAAK 169


>gi|300115536|ref|YP_003762111.1| peptide deformylase [Nitrosococcus watsonii C-113]
 gi|299541473|gb|ADJ29790.1| peptide deformylase [Nitrosococcus watsonii C-113]
          Length = 167

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP LRR ++P+  ++  I  L D+MLE MY   GIGLAA+Q+ V  ++VV
Sbjct: 1   MARLNILHYPDPRLRRKAQPVAVVDKSIRKLADDMLETMYQAPGIGLAAIQVNVPKQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    I      +  +EGCLS+P+    V R+A ITV Y+D   Q
Sbjct: 61  IDISEDKSSP---LVLINPEIIARQGKAESEEGCLSVPEIFEPVTRAAEITVHYLDREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q +    LLATC+QHELDHL G LFID+ S LKR  I KK  K  +L
Sbjct: 118 KQELQTQELLATCIQHELDHLEGKLFIDYFSTLKRQRIRKKAEKRQRL 165


>gi|269127211|ref|YP_003300581.1| peptide deformylase [Thermomonospora curvata DSM 43183]
 gi|268312169|gb|ACY98543.1| peptide deformylase [Thermomonospora curvata DSM 43183]
          Length = 181

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  KP+ +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVKPIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMIDASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++D               +  S+D    +EGCLSIP       R+     +  +   +
Sbjct: 61  YCVEDRLGHLV------NPTLDLSEDQEEDEEGCLSIPGLTFPTPRAKRAVAKGFNMYGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +    LLA C+QHE DHL+GILFID +   +R        KL++  +
Sbjct: 115 PITLEGTDLLARCVQHETDHLDGILFIDRMDPEQRKAAM----KLIRQAE 160


>gi|56477100|ref|YP_158689.1| peptide deformylase [Aromatoleum aromaticum EbN1]
 gi|56313143|emb|CAI07788.1| N-formylmethionyl-tRNA deformylase 1 [Aromatoleum aromaticum EbN1]
          Length = 167

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L + + P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKHAAPVAVVDDSIRQLVRDMAETMYEAPGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               I         +EGCLS+P     V R+  + VR +D   +
Sbjct: 61  IDVSEDRSTL---RAFINPEILEKSGEQTCEEGCLSVPGVYEKVTRAERVKVRALDERGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F+++LS LK   I  +++K  ++
Sbjct: 118 PFELEAEGLLAVCIQHEIDHLDGRVFVEYLSPLKLGRIKARLAKKARI 165


>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
 gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
          Length = 172

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L+++  P+  ++  +  L D+MLE MY+  GIGLAA QIGV+ RL+V+
Sbjct: 1   MKHSILIHPDPRLKKICAPVADLSDKLRLLADDMLETMYAAPGIGLAAPQIGVMERLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++      P+V  NP+II+ S++ +VY+EGCLSIPD  A+V R   + V+++D N  
Sbjct: 61  DCEKEEGVEPKPLVMFNPEIISSSEETNVYEEGCLSIPDQYAEVTRPRDVEVQWLDRNGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q    DGL ATC+QHE+DHL+G LFID+L  LKR MIT+KM KL + R
Sbjct: 121 QQRETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITRKMQKLKRER 169


>gi|262402048|ref|ZP_06078612.1| peptide deformylase [Vibrio sp. RC586]
 gi|262351694|gb|EEZ00826.1| peptide deformylase [Vibrio sp. RC586]
          Length = 169

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/170 (47%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  +ID+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIIDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+  D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKAQDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKVKRFNE 167


>gi|95928563|ref|ZP_01311310.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
 gi|95135353|gb|EAT17005.1| Peptide deformylase [Desulfuromonas acetoxidans DSM 684]
          Length = 171

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L  +S PI  ++ +I  L  +M E MY+  G+GLAA Q+G+  RL+V
Sbjct: 1   MSLLKIYHYPDAVLAEMSEPIAVVDDEIRQLAADMAETMYAAPGVGLAAPQVGISRRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +         +    D     +EGCLS+P Y A VKRS+++ VRY+D + Q
Sbjct: 61  LDCGGEENPELIKAVNPEILERQGDSCE--EEGCLSVPGYYAAVKRSSWVKVRYVDMDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLA C QHE+DHL+G LF+D LS LK+ M  KK  K+++ +
Sbjct: 119 TVEREAEGLLAICFQHEIDHLDGKLFVDRLSSLKKGMFRKKYPKILEQQ 167


>gi|304399256|ref|ZP_07381122.1| peptide deformylase [Pantoea sp. aB]
 gi|304353182|gb|EFM17563.1| peptide deformylase [Pantoea sp. aB]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D +  
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|152977798|ref|YP_001343427.1| peptide deformylase [Actinobacillus succinogenes 130Z]
 gi|150839521|gb|ABR73492.1| peptide deformylase [Actinobacillus succinogenes 130Z]
          Length = 183

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V+ P+ + N ++   ID+M + MY  +GIGLAA Q+ V  R++ 
Sbjct: 13  MALLNVLIYPDERLKTVAAPVTEFNDELQTFIDDMFDTMYQEEGIGLAATQVDVHKRVIT 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      KN  + +    +  S+  +  +EGCLS+P +R  V R   ITV+ ++   +
Sbjct: 73  IDISGE---KNEQLVLINPELLDSEGETGIEEGCLSLPGFRGFVPRKEKITVKALNRYGE 129

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ K  + 
Sbjct: 130 EFTLHADGLLAICIQHEMDHLNGIVFADYLSPLKRNRMKEKLVKYQRQ 177


>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
 gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
 gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
 gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
 gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD  LR++++P+E  +  +  LI++M + MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIRKILYLPDERLRKIAKPVETFDESLQTLINDMFDTMYDARGVGLAAPQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+          + I    I  S     ++EGCLS+P     V R+  +TV+ +D   +
Sbjct: 61  IDIVGDKK---EQIVIVNPEIVSSHGEKEFEEGCLSVPGAYDTVVRAEKVTVKALDRFGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I  +GLLA CLQHE+DH+NG LF+D LS LKR M  +K+ K  +L+
Sbjct: 118 PFEITGEGLLAECLQHEIDHMNGKLFVDMLSPLKRMMARRKLDKFKRLQ 166


>gi|209965583|ref|YP_002298498.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 173

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+  ++  +  L+D+MLE MY   GIGLAA Q+GVL R++V
Sbjct: 1   MSLLNILIVPDARLRQTAEPVANVDGRVARLMDDMLETMYKAPGIGLAAPQVGVLERVIV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D+ +       P++  NP+II  SD+ +  QEGCLSIPD  ADV R   + VRY+D + 
Sbjct: 61  MDIAERKTEAPTPILMANPEIIARSDELATAQEGCLSIPDIYADVTRPRQVRVRYVDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + + + ADGL ATC+QHE+DHLNG+LF+D+LS LKR M+ +++ K+ + +
Sbjct: 121 EVRELDADGLTATCVQHEIDHLNGVLFVDYLSALKRSMLLRRLQKMQRNK 170


>gi|330429772|gb|AEC21106.1| peptide deformylase [Pusillimonas sp. T7-7]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P+++++  I  L+ +M E MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MALLPILRYPDPRLHKVAKPVQEVDDRIRQLVRDMAETMYDAPGVGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +     + +V INP+I+  SD+  VY+EGCLS+P    +V+RSA I VR ++   +
Sbjct: 61  IDVSED--GNDLIVLINPEILWKSDEVQVYEEGCLSVPGVYDEVERSARIRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+GLLA C+QHELDHL G +F+++LS LK++ I  ++ K  + 
Sbjct: 119 PYEFDAEGLLAVCVQHELDHLLGKVFVEYLSVLKQNRIKTRLRKQERE 166


>gi|296140267|ref|YP_003647510.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
 gi|296028401|gb|ADG79171.1| peptide deformylase [Tsukamurella paurometabola DSM 20162]
          Length = 180

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+PDP+LR  +  +   ++D+  L+D+M++ M+  +G GLAA Q+GV  R+ V
Sbjct: 1   MSVLPIRIYPDPVLRTRADEVTVFDADLARLVDDMIDTMHHHNGAGLAAPQVGVSKRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          INP      D+     EGCLSIP+      R   +    +D + +
Sbjct: 61  FGC-----GGREGHIINPVWRAVGDETQTGPEGCLSIPEILEPCTRHLNVVAEGVDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    +LA C+QHE DHL+G+LF+  L    R    K + 
Sbjct: 116 SLAIEGTEILARCIQHETDHLDGVLFLSRLEPEDRKRAMKAIR 158


>gi|85707836|ref|ZP_01038902.1| polypeptide deformylase [Erythrobacter sp. NAP1]
 gi|85689370|gb|EAQ29373.1| polypeptide deformylase [Erythrobacter sp. NAP1]
          Length = 190

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/188 (43%), Positives = 105/188 (55%), Gaps = 21/188 (11%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N ++  L ++M E MY   GIGLAA+Q+GV  RL
Sbjct: 1   MAIREILEVPDPRLKVVSEPVREDEFNDELKQLAEDMFETMYDAPGIGLAAIQVGVPKRL 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDF-------------------SVYQEGCLSIPD 99
           +VIDLQ       P+   +                             S Y EGCLS+P+
Sbjct: 61  LVIDLQPDDPDAEPVECEHDGHKHTHPATKKEPRVFVNPVILDPADELSTYNEGCLSVPE 120

Query: 100 YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
             ADV R A  TV+Y D +  H     +GLLATCLQHE+DHL GILFIDHLSRLKR+M  
Sbjct: 121 IYADVDRPATCTVKYQDLDGNHHEEQLEGLLATCLQHEMDHLEGILFIDHLSRLKRNMAL 180

Query: 160 KKMSKLVQ 167
           KK+ KL Q
Sbjct: 181 KKLKKLRQ 188


>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Oceanobacter sp. RED65]
 gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
          Length = 171

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E++      LID+M E MY   GIGLAA Q+ V  +++V
Sbjct: 1   MAILEILEFPDTRLRTIAKPVEEVTDAHRKLIDDMFETMYDCPGIGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P VFINPK+     +    QEGCLS+P +  DV+R     +  +D N Q
Sbjct: 61  MDISEDRSE--PHVFINPKVTVLDGEPEKMQEGCLSVPGFYEDVERIEHCKIEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A GLLA C+QHE+DHLNG LF+D+LS  KRD I KK+ K  +L
Sbjct: 119 PYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTKRDRIRKKLEKQHRL 166


>gi|223041757|ref|ZP_03611950.1| peptide deformylase [Actinobacillus minor 202]
 gi|240948040|ref|ZP_04752457.1| peptide deformylase [Actinobacillus minor NM305]
 gi|223017441|gb|EEF15859.1| peptide deformylase [Actinobacillus minor 202]
 gi|240297656|gb|EER48133.1| peptide deformylase [Actinobacillus minor NM305]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+  ++ ++   ID+M + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLEVVLYPDENLAKVCEPVAVVDDELNRFIDDMFDTMYEHEGIGLAAPQVDVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEIIESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +  ADGL A C+QHE+DHLNGILF+DHLS LKR  I +KM KL + 
Sbjct: 118 EVVYDADGLFAICIQHEIDHLNGILFVDHLSPLKRQRIKEKMVKLKKQ 165


>gi|121999101|ref|YP_001003888.1| peptide deformylase [Halorhodospira halophila SL1]
 gi|121590506|gb|ABM63086.1| peptide deformylase [Halorhodospira halophila SL1]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++++PDP LR  + P+ +++  +  L+D+MLE MY   GIGLAA Q+G   R+ V
Sbjct: 1   MALLDILVYPDPRLRERAEPVAEVDDAVRRLVDDMLETMYEARGIGLAATQVGDRRRVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+V INP+I+  + + S  +EGCLSIP Y  DV R+  +  R +D +AQ
Sbjct: 61  IDVSEERDE--PLVLINPEILEATGEASG-EEGCLSIPGYYDDVARATRVRYRALDRDAQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                A+G LA CLQHE+DHL+G LFID+LS LKR  + K+M K  +L
Sbjct: 118 PIEGEAEGTLAVCLQHEIDHLDGRLFIDYLSELKRKRVRKRMEKRERL 165


>gi|261213229|ref|ZP_05927511.1| peptide deformylase [Vibrio sp. RC341]
 gi|260837503|gb|EEX64206.1| peptide deformylase [Vibrio sp. RC341]
          Length = 190

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYRFEADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+EK+++ I +++D+M E MY+ DGIGLAA Q+ +  R++V
Sbjct: 1   MPILQILHYPDERLRTIATPVEKVDAKIQSIVDDMFETMYAEDGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    +N  + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D N Q
Sbjct: 61  IDVSD---TRNERLVLINPELLEKNGKTGIEEGCLSIPEQRALVSRAEKVKIRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 SFELQADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLYKQR 166


>gi|308188323|ref|YP_003932454.1| peptide deformylase [Pantoea vagans C9-1]
 gi|308058833|gb|ADO11005.1| peptide deformylase [Pantoea vagans C9-1]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  I---DVSESREERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELEASELLAICIQHEIDHLEGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|291619142|ref|YP_003521884.1| Def [Pantoea ananatis LMG 20103]
 gi|291154172|gb|ADD78756.1| Def [Pantoea ananatis LMG 20103]
 gi|327395471|dbj|BAK12893.1| peptide deformylase Def [Pantoea ananatis AJ13355]
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+D+  ++D+M E MYS +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKIAAPVKEVNADVQRIVDDMFETMYSEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRAFVPRAERVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +    LLA C+QHE+DHL+G LFID+LS LKR  I  K+ KL + 
Sbjct: 118 SFELETGDLLAICIQHEIDHLDGKLFIDYLSPLKRQRIKTKLEKLARQ 165


>gi|162452083|ref|YP_001614450.1| polypeptide deformylase [Sorangium cellulosum 'So ce 56']
 gi|161162665|emb|CAN93970.1| Polypeptide deformylase [Sorangium cellulosum 'So ce 56']
          Length = 170

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/164 (40%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +PDP LR+ ++P+ +I+ +I  LID+M E MY+  G+GLAA QIG  +R+ +
Sbjct: 1   MAIRTILHYPDPRLRQKAQPVGEISPEITKLIDDMAETMYAAPGVGLAATQIGEPHRVFL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+       N +VFINP+I+      +  +  CLS P    D+KR+  +TVR    +  
Sbjct: 61  VDIAADDEPSNLLVFINPEIVRQEGQLTGPEG-CLSFPGISEDIKRAERVTVRARGRDGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I ADGLLA  +QHELDHL+G+L ID +  LK+ ++ +KM K
Sbjct: 120 TFEIAADGLLAVAIQHELDHLDGVLMIDRMGTLKKRIVQRKMQK 163


>gi|332108677|gb|EGJ09901.1| peptide deformylase [Rubrivivax benzoatilyticus JA2]
          Length = 172

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M + P++ +PDP L +V++P+  +++ +  L+ +MLE MY ++G+GLAA Q+ V  RL V
Sbjct: 1   MAQLPILRYPDPRLHKVAKPVAAVDARVKQLVADMLETMYESEGVGLAATQVDVHERLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      +  PMVF+NP+I+  S++  +++EGCLS+P     V R+A +TVR +D    
Sbjct: 61  MDTSPEHDQ--PMVFVNPQIVARSEELVIWEEGCLSVPQVWDKVTRNARVTVRALDREGA 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I  DGL A C QHE+DHL+G +F+++LS LKR+ I  KM+K  + 
Sbjct: 119 EFEIALDGLAAVCAQHEIDHLDGKVFVEYLSLLKRERIKVKMAKRTRE 166


>gi|298290074|ref|YP_003692013.1| peptide deformylase [Starkeya novella DSM 506]
 gi|296926585|gb|ADH87394.1| peptide deformylase [Starkeya novella DSM 506]
          Length = 182

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/178 (50%), Positives = 127/178 (71%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +PLVI PD  LR +S PI ++++ +  ++++M E MY   GIGLAAVQ+G+  R++ 
Sbjct: 1   MSIRPLVIIPDSRLRLISDPIVRVDARVRAIVEDMFETMYDAPGIGLAAVQVGIPERIIT 60

Query: 61  ID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D         +    +KNP+  INP+II+ S++ SVY EGCLSIP+Y ADV+R A + V
Sbjct: 61  VDVVRREEGEEEGAEEKKNPIALINPEIISSSEEISVYSEGCLSIPEYYADVERPARVKV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           RYMD N + Q I ADGLLATC+QHE+DHLNG+LFIDH+S+LKRD + KK +K+ + ++
Sbjct: 121 RYMDLNGETQEIDADGLLATCVQHEIDHLNGVLFIDHISKLKRDRVMKKFTKIAKEKE 178


>gi|327482957|gb|AEA77364.1| Peptide deformylase [Vibrio cholerae LMA3894-4]
          Length = 169

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|330818688|ref|YP_004362393.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
 gi|327371081|gb|AEA62437.1| Polypeptide deformylase [Burkholderia gladioli BSR3]
          Length = 167

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++ ++  I  L+D+M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDVVDDRIRKLVDDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +  + Q
Sbjct: 61  IDTSEDKNALQ--VFINPEIVWSSDGKQVYEEGCLSVPGVYDEVERPDHVRVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 PFELECEGLLAVCIQHEMDHLMGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|237806929|ref|YP_002891369.1| peptide deformylase [Tolumonas auensis DSM 9187]
 gi|259645187|sp|C4L7Y4|DEF_TOLAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|237499190|gb|ACQ91783.1| peptide deformylase [Tolumonas auensis DSM 9187]
          Length = 167

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ PIEKI SD+ ++I++M E MY  +GIGLAA Q+ +  RLVV
Sbjct: 1   MATLDVLRFPDERLRKIATPIEKITSDLEHIIEDMFETMYLEEGIGLAATQVNIHKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  ++  +           +      +  +EGCLS+P+ RA V R+ +I VR +D + +
Sbjct: 61  VDTSENRDQPM---VFINPELIEKRGETGIEEGCLSVPECRAFVPRAEWIKVRALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADGLLA CLQHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFEIEADGLLAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARN 165


>gi|52426256|ref|YP_089393.1| peptide deformylase [Mannheimia succiniciproducens MBEL55E]
 gi|81691285|sp|Q65QF2|DEF_MANSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|52308308|gb|AAU38808.1| Def protein [Mannheimia succiniciproducens MBEL55E]
          Length = 171

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ ++ P+ + N ++   ID+M E MY  +GIGLAA Q+ V  R++ 
Sbjct: 1   MSVLNVLIYPDERLKTIAEPVTEFNDELQTFIDDMFETMYQEEGIGLAATQVDVHKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+          + +    +   +  +  +EGCLS+P  R  V R   +TV+ ++   +
Sbjct: 61  IDITGEKT---EQLVLINPELLDGEGETGIEEGCLSLPGLRGFVPRKEKVTVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              ++ADGLLA C+QHE+DHLNGI+F D+LS LKR+ + +K+ KL + 
Sbjct: 118 EFTLHADGLLAICIQHEIDHLNGIVFADYLSPLKRNRMKEKLVKLQKQ 165


>gi|317494307|ref|ZP_07952721.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917557|gb|EFV38902.1| peptide deformylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 169

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++  +I  ++D+M + MY+ +GIGLAA Q+ V  R++V
Sbjct: 1   MAVLQVLHFPDERLRTVAQPVKEVTPEIQRIVDDMFDTMYAEEGIGLAATQVDVHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +  SD  +  +EGCLS+P++RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLSSDGETGIEEGCLSVPEHRALVPRAERVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|319940733|ref|ZP_08015075.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805884|gb|EFW02651.1| peptide deformylase [Sutterella wadsworthensis 3_1_45B]
          Length = 179

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P++ +P P L   + P+   N  I  L+++M E MY+  G+GLAA Q+G+L R+VV
Sbjct: 1   MAKLPILQYPHPKLAAKAEPVADFNDAIKTLVNDMAETMYAAPGVGLAANQVGILKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D        VFINP+II    D   ++EGCLS+      VKR   + V   +   +
Sbjct: 61  IDITDDNSDLL--VFINPEIIETKGDLVDHEEGCLSLKGLYEHVKRPGQVRVHAQNIEGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +   GLLA C+QHE+DHLNGI+FIDHLS+LK+     K+ KL + 
Sbjct: 119 PFELECTGLLAVCIQHEVDHLNGIVFIDHLSQLKKQRACTKLRKLRRE 166


>gi|189426265|ref|YP_001953442.1| peptide deformylase [Geobacter lovleyi SZ]
 gi|189422524|gb|ACD96922.1| peptide deformylase [Geobacter lovleyi SZ]
          Length = 166

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P++ FPDP+L++ S P+  I  +I+ L  +M E MY   G+GLAA QIGVL R++VI
Sbjct: 1   MIRPILAFPDPLLKQKSAPVTIITDEIIQLARDMAETMYDAPGVGLAAPQIGVLQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +  INP +I   +  +  +EGCLS+PD+ A+VKR   + V+ +    Q 
Sbjct: 61  DVAAKNEPPQLITAINPVVI-HGEGETYEEEGCLSVPDFSANVKRHERVVVKGLSLEGQE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +I +ADGLLA   QHE+DHL+GILF+D LS LKRD+  KK  K
Sbjct: 120 RIWHADGLLAVAFQHEIDHLDGILFVDRLSPLKRDLFVKKCKK 162


>gi|163841093|ref|YP_001625498.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162954569|gb|ABY24084.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 189

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  LI +M E M   DG+GLAA Q+GV  ++  
Sbjct: 1   MAILEIRIMGDPVLRTVAEPVTEFGPELAKLIADMFETMDDVDGVGLAAPQVGVSKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +     +     EGCLS+P     V+R     VR MD N  
Sbjct: 61  YRIGE-----LSGHVINPVLENGEANQPSGAEGCLSVPGLGYAVERKQTSRVRGMDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +I ADG+LA C+QHE DHLNG LFID L+   R    + + 
Sbjct: 116 PVLIEADGMLARCMQHETDHLNGKLFIDRLTGDDRRAAMRTIR 158


>gi|90406714|ref|ZP_01214907.1| peptide deformylase [Psychromonas sp. CNPT3]
 gi|90312167|gb|EAS40259.1| peptide deformylase [Psychromonas sp. CNPT3]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR V++ +     +++++  +M++ MY  +G+GLAA Q+ +  R+VV
Sbjct: 1   MALLDVLHFPDPRLRTVAKKVSNFTPELIDIAQDMIDTMYEENGVGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D      P+V INP+II+ S +    +  CLS+PD  AD+ R+ F+TV++ D    
Sbjct: 61  IDVSDERDD--PIVLINPEIISQSGEECSQEG-CLSVPDINADITRAEFVTVKFQDVQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q I AD LLA C+QHELDHL G LFID+LS  K+  I  K+ KL +  +
Sbjct: 118 AQQIEADSLLAVCIQHELDHLIGKLFIDYLSPFKQKRIKTKLEKLQRQNE 167


>gi|58424802|gb|AAW73839.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 183

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 14  MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 73

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 74  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 130

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 131 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 180


>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
 gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
          Length = 173

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/168 (43%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY   GIGLAA Q+ V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDASGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II  SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEERNE--PLVLINPEIIWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I A+GLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 LRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166


>gi|160872447|ref|ZP_02062579.1| peptide deformylase [Rickettsiella grylli]
 gi|159121246|gb|EDP46584.1| peptide deformylase [Rickettsiella grylli]
          Length = 168

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  PD  LR  +  I   ++ +  LID+M E MY+  GIGLAA QI +  +L V
Sbjct: 1   MAIYPIIQLPDVRLRVPTTSITVFDATLQQLIDDMFETMYAAKGIGLAAPQIAISKKLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++         +    I      ++ +EGCLS+P       R+ ++ ++ +D N +
Sbjct: 61  IDVTNNKSHTL---CLINPTIVEKKGEALLEEGCLSVPGIYDKAPRALWVKLQALDRNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              I A+GLLA C+QHE+DHLNG LF+DHLS LK+ +  KK+ K+ + R
Sbjct: 118 PYEIEAEGLLAHCIQHEVDHLNGKLFLDHLSPLKQQLARKKLDKIKKRR 166


>gi|254293235|ref|YP_003059258.1| peptide deformylase [Hirschia baltica ATCC 49814]
 gi|254041766|gb|ACT58561.1| peptide deformylase [Hirschia baltica ATCC 49814]
          Length = 181

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 105/157 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++  P+P+L+ VS+P++ +  +I  L+D+MLE MY   GIGLAA+QIG   R++V
Sbjct: 1   MTIRPILTVPNPLLKEVSKPVDAVTDEIRALMDDMLETMYDAPGIGLAAIQIGEPVRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     NP  F+NP+I+   +    Y EGCLS+P+    ++R   + ++Y++   +
Sbjct: 61  MDIADKDEEPNPQYFVNPEILEKVEATVPYDEGCLSVPEIYETIERPERVQIKYLNYKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
             I +A+GL ATC+QHE+DHL G LFID+LSRLKR  
Sbjct: 121 EVIEWAEGLYATCIQHEMDHLEGKLFIDYLSRLKRTR 157


>gi|127514664|ref|YP_001095861.1| peptide deformylase [Shewanella loihica PV-4]
 gi|126639959|gb|ABO25602.1| peptide deformylase [Shewanella loihica PV-4]
          Length = 170

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++PI + N+++   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDERLRTIAKPITEFNAELQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDDVERPK---VFINLEIIEKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
 gi|81678352|sp|Q5QXI5|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
          Length = 174

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PD  LR+V++ IEK++ +I ++ID+M E MY   G+GLAA Q+ V  RL V
Sbjct: 1   MAKMTVLQYPDERLRKVAQKIEKVDDNIRSVIDDMFETMYEEQGVGLAATQVDVHRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  +  +            IT ++      EGCLS P   A V+R+  ITV  +D N +
Sbjct: 61  SDCSEDQNEPL---VFINPEITEAEGHFKNDEGCLSFPGVYAKVERAERITVTALDKNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+GLLA C+QHE+DHL+G LF+D+LS LKR+ I KK+ K  +L +
Sbjct: 118 RFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLKRERIRKKLEKEQRLAE 167


>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 177

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 1/170 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + + I+PD +L++ +  + + N ++  L+++M E MY   G+GLAA QIG+L ++VVI
Sbjct: 1   MIREIRIYPDDVLKKKAEVVTEFNEELEQLVNDMFETMYKRGGVGLAANQIGILKKVVVI 60

Query: 62  D-LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +    + +    I   +   V +EGCLS+P     VKR+A+  V+  +   +
Sbjct: 61  DLHSGKEKQGKEQIILINPEIVALEGEEVKEEGCLSLPGLYKKVKRAAYAKVKAQNLKGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             II  +GLLA   QHE+DHLNGI+FID LS L+R +  +K  KL +  +
Sbjct: 121 EFIIEGEGLLARAFQHEIDHLNGIVFIDRLSPLQRRLALEKYKKLKRKYE 170


>gi|157373176|ref|YP_001471776.1| peptide deformylase [Shewanella sediminis HAW-EB3]
 gi|157315550|gb|ABV34648.1| Peptide deformylase [Shewanella sediminis HAW-EB3]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM + MY   GIGLAA Q+     L++
Sbjct: 1   MSLLKVLRFPDERLRTIAKPVAEFNADLQAQIDNMFDTMYEEKGIGLAATQVDFHQHLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           IT  D     +EGCLS+P   A+V R+  +T++  D    
Sbjct: 61  MDLQDDVERPT---VFINMEITARDGSCTNEEGCLSVPGIYANVDRAESVTIKAFDREGV 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHLNG LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLDADGLFAICLQHELDHLNGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|94264678|ref|ZP_01288460.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93454909|gb|EAT05153.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 263

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K++
Sbjct: 252 KII 254


>gi|119773185|ref|YP_925925.1| peptide deformylase [Shewanella amazonensis SB2B]
 gi|119765685|gb|ABL98255.1| peptide deformylase [Shewanella amazonensis SB2B]
          Length = 167

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+ +    + + ID+M E MY  +GIGLAA Q+    RL+V
Sbjct: 1   MPLLKVLRFPDERLRTVAKPVTEFTPALQSQIDDMFETMYEENGIGLAATQVDFHQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+  ITV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIVAKSGDFCNEEGCLSVPGVYAKVDRAELITVKALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADGLFAICLQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKAARN 165


>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
 gi|254767590|sp|B8F726|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
 gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L +V +P+E +++++   IDNM + MY  +GIGLAA Q+ VL R++ 
Sbjct: 1   MAVLDVLIYPDENLAKVCQPVETVDAELNTFIDNMFDTMYEHEGIGLAAPQVNVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP  RA V R   +TV+ ++   Q
Sbjct: 61  IDIEGDKTNQI---VLINPEILESSGETGIEEGCLSIPGCRALVPRKEKLTVKALNREGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNG+LF+DH+S+LKR  I +KM KL + 
Sbjct: 118 TFTLEADGLLAICIQHEIDHLNGVLFVDHISQLKRQRIKEKMLKLKKQ 165


>gi|94268712|ref|ZP_01291263.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93451495|gb|EAT02324.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  +RP+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKARPVTEFDDSLRELVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR   + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYTRVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K+ 
Sbjct: 252 KIS 254


>gi|84622203|ref|YP_449575.1| peptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|161899019|ref|YP_199224.2| peptide deformylase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366143|dbj|BAE67301.1| polypeptide deformylase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 170

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           MV  P++ FPDP LR  + P++     +     L+D+M + MY   GIGLAA Q+ V  R
Sbjct: 1   MVLLPILEFPDPRLRTKALPVDSAELASQAFQALLDDMFQTMYEAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ D  +   P VF+NP+I++   +    +  CLS+P   ADV R+  ITVRY+D 
Sbjct: 61  FMVIDVSDEKNL--PQVFVNPEIVSKQGEQLCQEG-CLSVPGIYADVSRADAITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q ++ADGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 QGQAQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRK 167


>gi|15640078|ref|NP_229705.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587283|ref|ZP_01677056.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121727904|ref|ZP_01680963.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147673376|ref|YP_001218366.1| peptide deformylase [Vibrio cholerae O395]
 gi|153212941|ref|ZP_01948535.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|153802782|ref|ZP_01957368.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|153817595|ref|ZP_01970262.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153821925|ref|ZP_01974592.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153826444|ref|ZP_01979111.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|153830125|ref|ZP_01982792.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227080283|ref|YP_002808834.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|254291093|ref|ZP_04961890.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|255746772|ref|ZP_05420718.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262155853|ref|ZP_06028975.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
 gi|262166896|ref|ZP_06034617.1| peptide deformylase [Vibrio cholerae RC27]
 gi|17432954|sp|Q9KVU3|DEF1_VIBCH RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548529|gb|EAX58585.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121629848|gb|EAX62263.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|124116167|gb|EAY34987.1| polypeptide deformylase [Vibrio cholerae 1587]
 gi|124121695|gb|EAY40438.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|126511863|gb|EAZ74457.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126520545|gb|EAZ77768.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146315259|gb|ABQ19798.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148874389|gb|EDL72524.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149739830|gb|EDM54025.1| polypeptide deformylase [Vibrio cholerae MZO-2]
 gi|150422938|gb|EDN14888.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|227008171|gb|ACP04383.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227011951|gb|ACP08161.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|255735529|gb|EET90928.1| peptide deformylase [Vibrio cholera CIRS 101]
 gi|262024667|gb|EEY43347.1| peptide deformylase [Vibrio cholerae RC27]
 gi|262030305|gb|EEY48947.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 61  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 118 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|87121016|ref|ZP_01076908.1| peptide deformylase [Marinomonas sp. MED121]
 gi|86163854|gb|EAQ65127.1| peptide deformylase [Marinomonas sp. MED121]
          Length = 169

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++P+   N  +   ID+MLE MY  +G+GLAA Q+    RLVV
Sbjct: 1   MAVLPVLEYPDPRLRTVAKPVTDFNDALQVKIDDMLETMYDQNGLGLAATQVDFHQRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   + +PMVFINP+     D  +  QEGCLS+P +   + R+A + V  +D N  
Sbjct: 61  MDFSEE--KNDPMVFINPRFEVLDDAANEEQEGCLSVPGFYEHIYRAARVKVIALDRNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                  GLLA C+QHE+DHL+G L +D+LS LKR+ I  K+ K  +
Sbjct: 119 EFEKKVAGLLAVCVQHEIDHLDGKLMVDYLSPLKRNRIKTKLVKNQK 165


>gi|295691230|ref|YP_003594923.1| peptide deformylase [Caulobacter segnis ATCC 21756]
 gi|295433133|gb|ADG12305.1| peptide deformylase [Caulobacter segnis ATCC 21756]
          Length = 173

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLAVLKKISTPVEVVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++ +DL        P  F+NP+I+  S++  VY+EGCLS+P+Y  +V+R A +T+RYM+
Sbjct: 61  RVITMDLAREGEEPAPRYFVNPEILASSEEMFVYEEGCLSVPEYFDEVERPAKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAIAKVKKARR 171


>gi|323496960|ref|ZP_08101988.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318034|gb|EGA71017.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 173

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|297180810|gb|ADI17016.1| N-formylmethionyl-tRNA deformylase [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 170

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVESVTPEIQKIVDDMLETMYEENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  +A V R+A +TV+ +D +  
Sbjct: 61  IDVSE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGSQALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +
Sbjct: 118 EYQFDADDLLAICVQHELDHLMGKLFVDYLSPLKRQRIKQKLEKIKR 164


>gi|323493839|ref|ZP_08098957.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323311973|gb|EGA65119.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 172

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDVSD--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|296269346|ref|YP_003651978.1| peptide deformylase [Thermobispora bispora DSM 43833]
 gi|296092133|gb|ADG88085.1| peptide deformylase [Thermobispora bispora DSM 43833]
          Length = 182

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA QIGV  R+  
Sbjct: 1   MAIRQIRLFGDPVLRTPAEPVVDFDKELRKLVKDLTDTMLDANGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +    +     +EGCLS P       R+     +  +   +
Sbjct: 61  Y-----NVDGQLGHLVNPNLDLSDEMDEEGEEGCLSFPGLSYPTPRAIRAVAKGFNMYGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    L+A CLQHE DHL+GILFID ++   R +  K + +
Sbjct: 116 PVTIEGTELMARCLQHETDHLDGILFIDRMNPEHRRLAMKAIRE 159


>gi|149910328|ref|ZP_01898971.1| peptide deformylase [Moritella sp. PE36]
 gi|149806576|gb|EDM66544.1| peptide deformylase [Moritella sp. PE36]
          Length = 167

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  L+++++P+++I      +ID+MLE MY+ +GIGLAAVQ+ +L R+VV
Sbjct: 1   MAILEVLHFPDDRLKKIAQPVQEITPATQIIIDDMLETMYAEEGIGLAAVQVNILQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +   + +   ++T     +  +EGCLS+P+ RA V R+  +TV  +D +  
Sbjct: 61  I---DVSGTRGEPLILINPVLTNKCGETGIEEGCLSVPESRAFVPRAESVTVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA CLQHE+DHLNG LFID+LS LK+  I KK+ KL + 
Sbjct: 118 EFTLEAHDLLAICLQHEVDHLNGKLFIDYLSPLKQQRIRKKLEKLARQ 165


>gi|40062663|gb|AAR37584.1| polypeptide deformylase [uncultured marine bacterium 313]
          Length = 185

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/181 (41%), Positives = 119/181 (65%), Gaps = 11/181 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P+ +LR  S  +++++ D+  L+++MLE MY+  GIGLAA+Q+GV  R++V
Sbjct: 1   MALRKILTEPNKLLREKSLTVKEVDEDLQKLMNDMLETMYAAPGIGLAAIQVGVPKRVIV 60

Query: 61  IDLQD-----------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D+                RKNP+ F+NP+IIT S + S Y+EGCLS+P   A++ R   
Sbjct: 61  LDIGWRDKPESTNDEKQDERKNPIYFVNPEIITKSTNNSTYEEGCLSVPGQFAEIDRPDK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             ++Y+D   Q + + A+G+ ATC+QHE+DHL GILFID+LS+LK+ MI KK++K  +  
Sbjct: 121 CHIKYLDYYGQPKELMAEGMFATCIQHEIDHLEGILFIDYLSKLKKSMIVKKLAKQKEQL 180

Query: 170 D 170
           D
Sbjct: 181 D 181


>gi|114770091|ref|ZP_01447629.1| peptide deformylase [alpha proteobacterium HTCC2255]
 gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
          Length = 172

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/168 (44%), Positives = 111/168 (66%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+++ PDP L+++  P++ ++++   L D+M+E MY   G+GLAA Q+    R+ V
Sbjct: 1   MSLLPILLHPDPRLKKLCVPVQSVDAETRKLADSMIETMYDAPGVGLAAPQVASDARIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D      P+V INP+II+ S++ + Y EGCLS+PD   DV+R   + + ++D + +
Sbjct: 61  MDCTDSESDNQPLVLINPEIISVSEELNTYSEGCLSLPDLFEDVERPKQVRMSFLDIDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC QHELDHLNG+LFIDHLSR+KR M+TKKM KL + 
Sbjct: 121 QHNELFDGLWATCAQHELDHLNGVLFIDHLSRMKRSMMTKKMVKLKKE 168


>gi|262191293|ref|ZP_06049487.1| peptide deformylase [Vibrio cholerae CT 5369-93]
 gi|262032831|gb|EEY51375.1| peptide deformylase [Vibrio cholerae CT 5369-93]
          Length = 190

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRVVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
 gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
          Length = 172

 Score =  143 bits (361), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L++   P+ ++  +I  L  +MLE MY+  G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKQPCEPVTEVTDEIRKLAADMLETMYAAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPKII-TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       K P V INP +  +  D  S  +       +YRADV R + + ++  D +  
Sbjct: 61  DPAGKDEDKQPRVLINPVLELSGEDVVSEQEGCLSVPLNYRADVPRKSRVLLKATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                     A  +QHE DHL+GILFID +SRL+R +   K+ K ++ ++
Sbjct: 121 GIEEDLTDFPAIIIQHEADHLDGILFIDKISRLRRTLYDSKVKKWLKRKN 170


>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
 gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
          Length = 175

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/168 (46%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L++ + P+  I+ ++  L D+MLE MY   GIGLAA Q+G+L R+VV+
Sbjct: 4   MKRSIILHPDPRLKKTAEPVADISDELRRLGDDMLETMYDAPGIGLAAPQVGILQRVVVM 63

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D          P++  NP++I  SD+ SVY+EGCLSIP+  A+V R A + VR+MD +  
Sbjct: 64  DCIKEPGDTPRPVIMFNPEVIATSDETSVYEEGCLSIPEQFAEVTRPAEVEVRWMDRDGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q     GL ATC QHE+DHL+G LFID+L  L+R MIT+KM KL + 
Sbjct: 124 AQSEVFTGLWATCAQHEIDHLDGKLFIDYLRPLRRQMITRKMVKLKRE 171


>gi|262273080|ref|ZP_06050897.1| peptide deformylase [Grimontia hollisae CIP 101886]
 gi|262222836|gb|EEY74144.1| peptide deformylase [Grimontia hollisae CIP 101886]
          Length = 170

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+MLE MY  DGIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVESVTPEIQKIVDDMLETMYQEDGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R++ +TV+ +D +  
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRASEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LK+  I +K+ K+ +
Sbjct: 118 EYQFEADDLLAICVQHELDHLEGKLFVDYLSPLKQQRIKQKLEKIKR 164


>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
 gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
          Length = 178

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +++ PDP L+ V+ P+  ++  +  L D+MLE MY+  GIGLAA Q+G++ R++V
Sbjct: 4   MTLRSILLHPDPRLKSVADPVATVDKTLHALADDMLETMYNAPGIGLAAPQLGIMQRMLV 63

Query: 61  IDLQ-DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D   D      PMV INP++I  S D ++Y EGCLSIPD  A+V+R A + V +M+ + 
Sbjct: 64  MDCIKDDMETPQPMVLINPRVIFASSDTNIYDEGCLSIPDQYAEVERPAVVKVEWMNLDG 123

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q      L ATC+QHE+DHLNG LFID+L  L+R MIT+KM KL + 
Sbjct: 124 KTQQEEFSDLWATCVQHEIDHLNGKLFIDYLKPLRRQMITRKMQKLKRE 172


>gi|261416784|ref|YP_003250467.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373240|gb|ACX75985.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325617|gb|ADL24818.1| peptide deformylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 179

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/171 (39%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ DP+LR+   PI +I  ++  L  +MLE MY   G GLAA QIG   RLVV
Sbjct: 1   MAILPIRIYGDPVLRKKCEPITEITPELRQLAKDMLETMYDAPGCGLAAPQIGKNIRLVV 60

Query: 61  ID--LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID  + D    +  ++F              Y EGCLS+P+   +V R   +TVR+ D N
Sbjct: 61  IDTAIPDEEEPRPYIMFNPEWEAEPDAKNVDYDEGCLSLPEIFCNVVRPDRVTVRFFDIN 120

Query: 119 AQHQIIY-ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + Q I+  +GL A C+QHE DHLNG LF+D +S   R M   K+ K+ + 
Sbjct: 121 GEAQEIHNCEGLFARCIQHECDHLNGDLFVDKISTSDRTMNQSKLRKMAKE 171


>gi|33152876|ref|NP_874229.1| peptide deformylase [Haemophilus ducreyi 35000HP]
 gi|39930849|sp|Q7VKK9|DEF_HAEDU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|33149101|gb|AAP96618.1| peptide deformylase [Haemophilus ducreyi 35000HP]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY   GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP YRA V R   ITV+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKITVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I +AD L A C+QHE+DHLNGI+F+DH+S LKR  I  KM KL + 
Sbjct: 118 EVIYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165


>gi|315122858|ref|YP_004063347.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313496260|gb|ADR52859.1| peptide deformylase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 165

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 115/168 (68%), Positives = 144/168 (85%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M KK L+ FPDP+LRRVSR +E I+SDI++LI++M EVMYS+DGIGLAAVQIG+LYR+VV
Sbjct: 1   MKKKSLIFFPDPVLRRVSRSVETIDSDIIHLIEDMFEVMYSSDGIGLAAVQIGILYRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I      + K+P+VFINP I++ S+D SV  EGCLSIP++RADVKR++F+TV+Y+D NAQ
Sbjct: 61  I----DLNTKSPLVFINPTIVSSSNDCSVRAEGCLSIPNHRADVKRASFVTVKYLDSNAQ 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            QIIYADGLLATCLQHE+DHLNGILFIDH+SRLKRDMI  K+ KL++ 
Sbjct: 117 PQIIYADGLLATCLQHEIDHLNGILFIDHISRLKRDMIINKILKLIRN 164


>gi|254851611|ref|ZP_05240961.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|254847316|gb|EET25730.1| peptide deformylase 2 [Vibrio cholerae MO10]
          Length = 190

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|238921409|ref|YP_002934924.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
 gi|259645180|sp|C5BF17|DEF_EDWI9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238870978|gb|ACR70689.1| peptide deformylase (PDF) [Edwardsiella ictaluri 93-146]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +   D  +  +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAENIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 SFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|269140540|ref|YP_003297241.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|267986201|gb|ACY86030.1| peptide deformylase [Edwardsiella tarda EIB202]
 gi|304560325|gb|ADM42989.1| Peptide deformylase [Edwardsiella tarda FL6-60]
          Length = 171

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ ++  +I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRTIAKPVHEVTPEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +   D  +  +EGCLS+P+ RA V R+  I VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLQHDGEAGIEEGCLSVPEQRALVTRAESIKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + +
Sbjct: 118 PFELETDGLLAICIQHEMDHLMGKLFIDYLSPLKRQRIRQKLEKLYKQQ 166


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
 gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++ P+   +  I  L+ +M E MY+  G+GLAA Q+ V  ++VV
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDERIKKLVADMAETMYAAPGVGLAATQVDVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D    KN  VFINP+I+  S+D  VY EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDVSDD--GKNLQVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRAFDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 AFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKLQKEERE 166


>gi|256394328|ref|YP_003115892.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256360554|gb|ACU74051.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 213

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ I  DP+L R   P+E+ +  +  L+ +M   MY+ +G+GLAA QIGV  R+ V 
Sbjct: 8   TARPITIVGDPVLHRPCAPVEEFDDRLAGLVADMFASMYAAEGVGLAANQIGVPLRVFVY 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++    +NP +     D        EGCLS+P    ++ R  +  V  +D +
Sbjct: 68  DCQDDDGVEHVGHVVNPVLAEQPPDRRQLDDSAEGCLSVPGPHHELARPDYARVTGVDLH 127

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +   +   G  A CLQHE DHL G L+ID LS+ +R  +  +M ++ + +
Sbjct: 128 GEPITVEGTGYFARCLQHEFDHLEGRLYIDRLSKRQRKNVLAEMERMQEEK 178


>gi|91226303|ref|ZP_01261143.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262392831|ref|YP_003284685.1| peptide deformylase [Vibrio sp. Ex25]
 gi|91189314|gb|EAS75593.1| peptide deformylase [Vibrio alginolyticus 12G01]
 gi|262336425|gb|ACY50220.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 172

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|153834309|ref|ZP_01986976.1| peptide deformylase [Vibrio harveyi HY01]
 gi|148869317|gb|EDL68331.1| peptide deformylase [Vibrio harveyi HY01]
          Length = 172

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQEKLAKIKRFNE 167


>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
 gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
          Length = 171

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 102/167 (61%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ +PDP+L+++S+P+ + +S +  L+ +M + MY+ +G+GLAA QIG+L R+ V+
Sbjct: 1   MIHPILTYPDPLLKKISQPVTQFDSALQQLVSDMFDTMYNANGVGLAAPQIGILRRICVL 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D       +   + +    I   +  + ++EGCLS+P Y  ++KR   I V++ D   Q 
Sbjct: 61  DPASGKEEEAQPLVLINPQILSGEGLTTFEEGCLSVPGYYGEIKRYERIQVQFNDLQGQE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q    DG  A   QHE+DHLNG LFI+HL   +RD+I +K+ K ++ 
Sbjct: 121 QTAILDGFTAIIAQHEMDHLNGKLFIEHLGSSERDLIRRKIRKAMKE 167


>gi|260775015|ref|ZP_05883915.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609105|gb|EEX35264.1| peptide deformylase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 173

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEKVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|83951626|ref|ZP_00960358.1| peptide deformylase [Roseovarius nubinhibens ISM]
 gi|83836632|gb|EAP75929.1| peptide deformylase [Roseovarius nubinhibens ISM]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 113/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+P++I PDP L++V  P++ I+  +  L D+MLE MY   GIGLA  QIGV+ R++V+
Sbjct: 1   MKRPILIHPDPRLKKVCAPLDDISDAVRALADDMLETMYDAPGIGLAGPQIGVMDRIIVM 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+V +NP++I  SD  + Y+EGCLSIPD  A+V R   + VR++  + +
Sbjct: 61  DCEKDEGVDPAPLVMVNPEVIASSDTLNTYEEGCLSIPDQFAEVTRPKEVEVRWLGLDGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 DGL ATC+QHE+DHL+G LFID+L  +KR +IT+KM KL + 
Sbjct: 121 EHSRGFDGLWATCVQHEIDHLDGKLFIDYLGTMKRQLITRKMVKLKRE 168


>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
 gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP LR+V  P++ +   +  L  +MLE MY   GIGLAA Q+GV+ RL+V+
Sbjct: 1   MKRSILIHPDPRLRKVCTPVKDVTDALRKLSQDMLETMYDAPGIGLAAPQVGVMDRLIVL 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  +D      P+V +NP+I  FS++ SVY+EGCLSIPD  ADV R A + +R+MD +  
Sbjct: 61  DCVKDEGATPRPIVMLNPEITAFSEEKSVYEEGCLSIPDQFADVTRPAEVEMRWMDLDGV 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  GL ATC+QHE+DHL+G LFID+LS +KR +IT++M KL + 
Sbjct: 121 EHQEGFGGLWATCVQHEIDHLDGKLFIDYLSAMKRQLITRRMQKLKRE 168


>gi|289644962|ref|ZP_06477003.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
 gi|289505235|gb|EFD26293.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
          Length = 182

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+ +++E M+   G+GLAA Q+GV  R+  
Sbjct: 1   MTVREIRLLGDPVLRTVAEPVTTFDKELRRLVADLVESMHEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            +NP +  FS++    +EGCLS+P    ++KR   +     + +  
Sbjct: 61  YHVDGEVG-----HLVNPVLGPFSEELMDGEEGCLSLPGLSFELKRPERVIAVGQNVHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   GLL+ C+QHE DHL+G+LFID L    +    K + +
Sbjct: 116 PVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPETKKAAMKAIRE 159


>gi|113968375|ref|YP_732168.1| peptide deformylase [Shewanella sp. MR-4]
 gi|114045540|ref|YP_736090.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117918494|ref|YP_867686.1| peptide deformylase [Shewanella sp. ANA-3]
 gi|113883059|gb|ABI37111.1| peptide deformylase [Shewanella sp. MR-4]
 gi|113886982|gb|ABI41033.1| peptide deformylase [Shewanella sp. MR-7]
 gi|117610826|gb|ABK46280.1| peptide deformylase [Shewanella sp. ANA-3]
          Length = 168

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + P+ +  +++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVDRPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165


>gi|261250604|ref|ZP_05943179.1| peptide deformylase [Vibrio orientalis CIP 102891]
 gi|260939173|gb|EEX95160.1| peptide deformylase [Vibrio orientalis CIP 102891]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVSRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|28899816|ref|NP_799421.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837667|ref|ZP_01990334.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|260362018|ref|ZP_05775023.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260876495|ref|ZP_05888850.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260897448|ref|ZP_05905944.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901339|ref|ZP_05909734.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076643|sp|Q87KD5|DEF1_VIBPA RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748957|gb|EDM59784.1| peptide deformylase [Vibrio parahaemolyticus AQ3810]
 gi|308087895|gb|EFO37590.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090413|gb|EFO40108.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308109891|gb|EFO47431.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114143|gb|EFO51683.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328471167|gb|EGF42069.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 172

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
 gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++NS+I  ++D+M + MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNSEIQRIVDDMFDTMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLAKL 165


>gi|119943871|ref|YP_941551.1| peptide deformylase [Psychromonas ingrahamii 37]
 gi|119862475|gb|ABM01952.1| peptide deformylase [Psychromonas ingrahamii 37]
          Length = 167

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/167 (42%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E+I  ++    +NM+E MY  +G+GLAA Q+    RLVV
Sbjct: 1   MALLEVLRFPDKRLRTIAKPVEQITVELKKTAENMIETMYEEEGVGLAATQVNFHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++      I   +I       + +EGCLS+P+  A+VKR+ F+T+ Y+D   +
Sbjct: 61  IDVSEQRNQAM---VIINPVIVEHSGEEISEEGCLSVPETNAEVKRAEFVTLEYLDIEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q++ ADGLLA CLQHE+DHLNG LFID+LS LK+  I  K+ KL +
Sbjct: 118 QQVLKADGLLAVCLQHEIDHLNGKLFIDYLSPLKQKRIKTKLEKLQR 164


>gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella oneidensis MR-1]
 gi|32363158|sp|Q8EKQ8|DEF1_SHEON RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase [Shewanella oneidensis MR-1]
          Length = 168

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQ 165


>gi|322513216|ref|ZP_08066342.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
 gi|322120992|gb|EFX92833.1| peptide deformylase [Actinobacillus ureae ATCC 25976]
          Length = 170

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYENEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP YRA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGYRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYDADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|298501230|ref|ZP_07011029.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|297540102|gb|EFH76164.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 206

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 38  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 97

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 98  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 154

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 155 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 204


>gi|330447316|ref|ZP_08310966.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491507|dbj|GAA05463.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 169

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 102/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E I  +I  +ID+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDERLRTVAKPVEAITPEIQTIIDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A ++V  +D N  
Sbjct: 61  I---DTSETRDQPMVLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVTALDRNGD 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 TICFDADELLAICIQHELDHLAGKLFVDYLSPLKRQRIKQKLEKIKRHNE 167


>gi|307251005|ref|ZP_07532930.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306856945|gb|EFM89076.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 170

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILGSCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|254507283|ref|ZP_05119419.1| peptide deformylase [Vibrio parahaemolyticus 16]
 gi|219549743|gb|EED26732.1| peptide deformylase [Vibrio parahaemolyticus 16]
          Length = 172

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ ++ + +
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|256379232|ref|YP_003102892.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255923535|gb|ACU39046.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 181

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  + + + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPAVEVTEFDVELRKLVKDLWDTMSDAGGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      D+     EGCLSIP    D  R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HMVNPTFDVVGDETQDGPEGCLSIPGMSWDCVRHRQVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    LLA C+QHE DHL+G++F+D L    R    +++ 
Sbjct: 116 PVEVEGTDLLARCIQHETDHLDGVVFVDRLDEETRKRAMREIR 158


>gi|297537405|ref|YP_003673174.1| peptide deformylase [Methylotenera sp. 301]
 gi|297256752|gb|ADI28597.1| peptide deformylase [Methylotenera sp. 301]
          Length = 166

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P++++++ I  LID+M E MY   GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHKVAKPVKEVDASIRRLIDDMRETMYDAPGIGLAATQVDQHIQLLI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  K+ +       I        Y+EGCLS+P     V R+  +TV  +D N +
Sbjct: 61  I---DTSETKDHLQVFINPKIIEKSGVQDYEEGCLSVPGVYETVTRAEKVTVEALDYNGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLL+ C+QHE+DHL G +F+++LS LKR  I  KM KL + +
Sbjct: 118 PFTLKAEGLLSICIQHEMDHLLGKVFVEYLSPLKRSRIKNKMLKLTRHK 166


>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
 gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
          Length = 172

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P+PILRR S+ +++I+  ++ LID+M+E MY+  G+GLAA Q+GV  R++VI
Sbjct: 1   MVLKIVKYPNPILRRKSKEVKEIDGRVIKLIDDMVETMYAAPGLGLAAPQVGVNERILVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      +   +  INP I+    +  + +EGCLSIP   A+V+R+A + V+ +D + + 
Sbjct: 61  DPSAGEDKSKLIKIINPVIVEADGE-VIEEEGCLSIPGEYANVRRAAKVLVKGLDVDGKE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             I A+ LLA   QHE+DHLNG+LFID LS  KR+ I K + K
Sbjct: 120 VEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTKRETIQKHIKK 162


>gi|297581920|ref|ZP_06943840.1| peptide deformylase [Vibrio cholerae RC385]
 gi|297533787|gb|EFH72628.1| peptide deformylase [Vibrio cholerae RC385]
          Length = 190

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++DNMLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDNMLETMYAEEGIGLAATQVDIHQRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 82  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 139 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 188


>gi|46143358|ref|ZP_00204456.1| COG0242: N-formylmethionyl-tRNA deformylase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|190151040|ref|YP_001969565.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303249953|ref|ZP_07336155.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|303253125|ref|ZP_07339274.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307246635|ref|ZP_07528706.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307248763|ref|ZP_07530776.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307253382|ref|ZP_07535253.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307255620|ref|ZP_07537425.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307257796|ref|ZP_07539553.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307260071|ref|ZP_07541783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|307262201|ref|ZP_07543851.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|307264402|ref|ZP_07545988.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|238692356|sp|B3GYT7|DEF_ACTP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189916171|gb|ACE62423.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647807|gb|EFL78014.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|302651016|gb|EFL81170.1| peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306852507|gb|EFM84741.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306854690|gb|EFM86880.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306859061|gb|EFM91103.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306861469|gb|EFM93458.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306863702|gb|EFM95628.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865907|gb|EFM97783.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306868075|gb|EFM99901.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306870218|gb|EFN01976.1| Peptide deformylase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 170

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L +V  P+ +++ ++   ID+M + MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MSVLEVVLYPDEGLAKVCEPVAQVDDELNQFIDDMFDTMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESCGETGIEEGCLSIPGHRALVPRKEKVKVKALNRKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I  ADGL A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EVIYEADGLFAICIQHEIDHLNGVLFVDHISALKRQRIKEKMQKLKKQ 165


>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
 gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
          Length = 171

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 109/157 (69%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDPILR+ S  + K+++DI  L+DNMLE MY   GIGLAA Q+G+L +++V
Sbjct: 1   MSVLEILKEPDPILRKKSDEVSKVDNDIRALMDNMLETMYQAPGIGLAAPQVGILKKVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL      K P+   NPKII  SD+ S  +EGCLSIP Y A+V R     ++Y+D + +
Sbjct: 61  IDLAKEDEPKKPLFIANPKIIWKSDELSSREEGCLSIPGYFAEVVRPTKCKLQYLDYDGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            Q I A+ LL+TC+QHE+DH +G+LFID+LS+LK+DM
Sbjct: 121 QQEIEAEDLLSTCIQHEVDHCDGVLFIDYLSKLKKDM 157


>gi|94266527|ref|ZP_01290215.1| Peptide deformylase [delta proteobacterium MLMS-1]
 gi|93452856|gb|EAT03376.1| Peptide deformylase [delta proteobacterium MLMS-1]
          Length = 259

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP+  L+  + P+ + +  +  L+ +M+  M+   G+GLAA Q+GV  ++VV
Sbjct: 72  MAIRPVVKFPEASLKSKAAPVTEFDDSLRALVADMIATMHDAPGVGLAAPQVGVPLQVVV 131

Query: 61  I----------DLQDHAHRK-------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           I          D +D            NP + +    +       V +EGCLS+ DY + 
Sbjct: 132 ILGRVARPELADGEDEQQPPAAVAEERNPSLVLINPRLVEGQGEEVDEEGCLSVRDYSSK 191

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           VKR A + V  +D + Q   I A+G  A  LQHE+DHL G LFID LS LKR +  KK+ 
Sbjct: 192 VKRYARVRVTALDLDGQPLEIEAEGFFARVLQHEIDHLEGTLFIDRLSSLKRALYRKKLK 251

Query: 164 KLV 166
           K+ 
Sbjct: 252 KIS 254


>gi|90413779|ref|ZP_01221767.1| peptide deformylase [Photobacterium profundum 3TCK]
 gi|90325248|gb|EAS41745.1| peptide deformylase [Photobacterium profundum 3TCK]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+E I  +I N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLTFPDERLRTIAKPVEAITPEIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      +    IT        +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVPRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  D
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFND 167


>gi|319785850|ref|YP_004145325.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464362|gb|ADV26094.1| peptide deformylase [Pseudoxanthomonas suwonensis 11-1]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  +E           L+D+M E MY   GIGLAA Q+    R
Sbjct: 1   MALLPILEFPDPRLRTKAAQVEPAQVTTPGFQRLVDDMFETMYEAPGIGLAATQVDQHLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID  +      PMVFINP+I+         +  CLS+P   ADV R+  I VR++D 
Sbjct: 61  FMVIDTSEDKSA--PMVFINPEIVQSQGGRVYQEG-CLSVPGIYADVTRADTIVVRFLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             + Q + ADGLLATC+QHE+DHL G LF+D+LS LKR+M+ KK++K  +
Sbjct: 118 EGRQQELAADGLLATCIQHEMDHLEGKLFVDYLSPLKREMVRKKLAKARR 167


>gi|212632966|ref|YP_002309491.1| peptide deformylase [Shewanella piezotolerans WP3]
 gi|212554450|gb|ACJ26904.1| Polypeptide deformylase [Shewanella piezotolerans WP3]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MSLLKVLRFPDERLRTVAKPITEFNAALQTQIDDMFETMYEEKGIGLAATQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 61  MDLQDEIDRPK---VFINLEIIAKSGDFCNEEGCLSVPGIYAKVDRAEFVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEAEGLFAICLQHELDHLAGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|285019618|ref|YP_003377329.1| peptide deformylase [Xanthomonas albilineans GPE PC73]
 gi|283474836|emb|CBA17335.1| putative peptide deformylase protein [Xanthomonas albilineans]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    ++ FPD  LR  + P++     +     L+D+M + MY+  GIGLAA Q+ V  R
Sbjct: 1   MALLTILEFPDSRLRTKAEPVDPAEVASVAFQRLLDDMFDTMYAAPGIGLAASQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VF+NP+I+    +    +  CLS+P   ADV RS  ITVRY+D 
Sbjct: 61  FMVIDVSEEKNA--PHVFVNPQIVQREGEQVHQEG-CLSVPGIYADVTRSESITVRYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             Q Q +  DGLLA C+QHE+DHL+G LF+D+LS LKR+M+ KK+ K  +
Sbjct: 118 QGQSQELTTDGLLAVCVQHEMDHLDGKLFVDYLSPLKREMVRKKLVKARK 167


>gi|160896282|ref|YP_001561864.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|160361866|gb|ABX33479.1| peptide deformylase [Delftia acidovorans SPH-1]
 gi|162662271|gb|EDQ49167.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 170

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ K++  I  L+ +M   MY   G+GLAA Q+ V  R+VV
Sbjct: 1   MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P   INP+++  S++  + +EGCLS+P     V+RS  I V+ +D N  
Sbjct: 61  VDVSEGRDE--PFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            +II A+G  A C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 ERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAE 168


>gi|253997550|ref|YP_003049614.1| peptide deformylase [Methylotenera mobilis JLW8]
 gi|253984229|gb|ACT49087.1| peptide deformylase [Methylotenera mobilis JLW8]
          Length = 166

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P++++N+ +  LID+M E MY+  GIGLAA Q+    +L++
Sbjct: 1   MAILDILNYPDPRLHTVAKPVKEVNAAVHRLIDDMAETMYAAPGIGLAATQVDQHVQLLL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  K+ +       I   D   VY+EGCLS+P     V R+  I V  +  + +
Sbjct: 61  V---DTSETKDQLQVFINPKILERDGEQVYEEGCLSVPGVYESVTRAEKILVEALGKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLL+ C+QHE+DHL G +F+++LS LKR+ I  KM K  + +
Sbjct: 118 RFTLEAHGLLSVCIQHEMDHLQGKVFVEYLSPLKRNRIKNKMLKQQRGK 166


>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
 gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
          Length = 175

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ ++I PDP L++V   +  ++ ++  L D+MLE MY   GIGLAA QIGVL RL+V+
Sbjct: 1   MKRSIIIHPDPRLKKVCDAVPDLSDELHVLADDMLETMYDAPGIGLAAPQIGVLSRLIVL 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D+     P+V  NP++I  SD+ +VY+EGCLSIP+  A+V+R   + V ++D + 
Sbjct: 61  DCAKSDNGEDARPLVMFNPRVIASSDEQNVYEEGCLSIPEQYAEVERPRVVDVEWLDRDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +    DGL ATC+QHE+DHL+G LFID+L  L+R MIT+KM KL + R
Sbjct: 121 MLRTETFDGLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMVKLKKER 170


>gi|241766760|ref|ZP_04764590.1| peptide deformylase [Acidovorax delafieldii 2AN]
 gi|241362866|gb|EER58605.1| peptide deformylase [Acidovorax delafieldii 2AN]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 109/167 (65%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +V++P++ +++ I  L+ +ML  MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MAILPILCYPDPRLHKVAQPVQAVDARIEALVADMLATMYDAHGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+I+  S +  V  EGCLS+P     V+R+A + VR +D   +
Sbjct: 61  IDVSEERNE--PLVLINPEIVWASAERHVGDEGCLSVPGIYDGVERAAAVHVRALDAQGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + I A+GLLA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +
Sbjct: 119 SRTIEAEGLLAVCMQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQR 165


>gi|167621968|ref|YP_001672262.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
 gi|167351990|gb|ABZ74603.1| peptide deformylase [Shewanella halifaxensis HAW-EB4]
          Length = 199

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++PI + N+ +   ID+M E MY   GIGLA+ Q+   ++L+V
Sbjct: 30  MSLLKVLQFPDERLRTVAKPIAEFNAALQTQIDDMFETMYEEKGIGLASTQVNYHHQLIV 89

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D +  
Sbjct: 90  MDLQDDVERPK---VFINLEIVAKSGDFCNEEGCLSVPGVYAKVDRAEFVTIKALDRDGN 146

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL+G LF+D+LS LKR  I +K+ K  +L
Sbjct: 147 EFSLEADGLFAICLQHELDHLSGKLFVDYLSPLKRQRIKQKLEKAARL 194


>gi|73543090|ref|YP_297610.1| peptide deformylase [Ralstonia eutropha JMP134]
 gi|72120503|gb|AAZ62766.1| peptide deformylase [Ralstonia eutropha JMP134]
          Length = 168

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 108/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++ +PDP L  V++P+++++  I  L+ +M E MY   GIGLAA Q+ V  ++VV
Sbjct: 1   MAKLDILTYPDPRLHTVAKPVKEVDDRIRQLVKDMAETMYEAPGIGLAATQVNVHEQVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R    VFINP+I+  SD+  V++EGCLS+P+    V+R   + VR ++   +
Sbjct: 61  IDVSE--TRDALQVFINPEIVWASDNRKVWEEGCLSVPEVYDRVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G +F+++LS LK++ I  K+ K  + R
Sbjct: 119 TFELDADDLLAVCIQHEMDHLLGKVFVEYLSPLKQNRIKSKLHKRERAR 167


>gi|229530168|ref|ZP_04419557.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229332301|gb|EEN97788.1| peptide deformylase [Vibrio cholerae 12129(1)]
          Length = 194

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISEN--RDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|134284113|ref|ZP_01770807.1| polypeptide deformylase [Burkholderia pseudomallei 305]
 gi|76578939|gb|ABA48414.1| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|134244565|gb|EBA44669.1| polypeptide deformylase [Burkholderia pseudomallei 305]
          Length = 201

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 35  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 94

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 95  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 152

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 153 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 199


>gi|319778670|ref|YP_004129583.1| Peptide deformylase [Taylorella equigenitalis MCE9]
 gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
          Length = 169

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L+++++ ++ ++  I  ++++M E MY+ +G+GLAA Q+ +  R+VV
Sbjct: 1   MAVLPILKYPDPRLKKIAKDVDVVDESIKKIVEDMAETMYAANGVGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +    +V INP+II  S++  +++EGCLS+P    +V+R + + V+ +D N  
Sbjct: 61  IDVSEERNDL--LVLINPEIIGISEEKVIHEEGCLSVPTIYDNVERFSEVRVKALDQNGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHELDHL G +F++ LS LK++ I  K+ K  + 
Sbjct: 119 AFEFKADGLLAICVQHELDHLMGKVFVEKLSALKQNRIKTKLKKAQKE 166


>gi|85373243|ref|YP_457305.1| peptide deformylase [Erythrobacter litoralis HTCC2594]
 gi|123409710|sp|Q2NCT3|DEF_ERYLH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84786326|gb|ABC62508.1| polypeptide deformylase [Erythrobacter litoralis HTCC2594]
          Length = 194

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/192 (43%), Positives = 116/192 (60%), Gaps = 25/192 (13%)

Query: 1   MVKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRL 58
           M  + ++  PDP L+ VS P+  ++ N D+  L+D+M E MY+  GIGLAA+Q+GV  R+
Sbjct: 1   MAIREILEVPDPRLKTVSEPVQPDEFNDDLKQLVDDMFETMYAAPGIGLAAIQVGVPKRV 60

Query: 59  VVID-----------------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCL 95
           +VID                        + +  + +P +FINP+II  +++ S YQEGCL
Sbjct: 61  LVIDLQEPDMDAEPEECGHDHGDGEGAHKHYPVKNDPRIFINPEIIDPNEELSTYQEGCL 120

Query: 96  SIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           S+P+  ADV R    TV+Y D   +      DGLLATCLQHE+DHL GILFIDHLSRLK+
Sbjct: 121 SVPEIYADVDRPKTCTVKYQDLTGKTHQEDLDGLLATCLQHEMDHLEGILFIDHLSRLKK 180

Query: 156 DMITKKMSKLVQ 167
            M  KK+ K+ Q
Sbjct: 181 QMALKKLKKMRQ 192


>gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 168

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR V++ + +++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTVAKDVVQVDDTVRQIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|307132806|ref|YP_003884822.1| peptide deformylase [Dickeya dadantii 3937]
 gi|306530335|gb|ADN00266.1| peptide deformylase [Dickeya dadantii 3937]
          Length = 169

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIKAQPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  ++VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVSVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLARQ 165


>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
 gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
          Length = 175

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +   P+  LR    PIE IN +I  L D+ML+ MY   GIGLAA QIGV+ R+ V
Sbjct: 1   MTIREIKFVPEACLREKCAPIEDINDEIRTLADDMLQTMYDAPGIGLAASQIGVMKRMFV 60

Query: 61  ID------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +D       +D +  K PMVFINP+I   S++ + YQEGCLSIP    DV+R A + V +
Sbjct: 61  LDVAERESEEDDSVEKEPMVFINPEITWSSEEKNTYQEGCLSIPGIYEDVERPAEVRVSF 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++   + Q I A GLLATC+QHELDHLNG+LFID+LSRLKRD I KKM K  + 
Sbjct: 121 LNIEGEKQEIEAGGLLATCIQHELDHLNGVLFIDYLSRLKRDRIVKKMIKQQKQ 174


>gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|221233212|ref|YP_002515648.1| peptide deformylase [Caulobacter crescentus NA1000]
 gi|23396553|sp|Q9ABF5|DEF_CAUCR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767574|sp|B8GYE3|DEF_CAUCN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter crescentus CB15]
 gi|220962384|gb|ACL93740.1| peptide deformylase [Caulobacter crescentus NA1000]
          Length = 173

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +      L+++S P+E +  ++  L+D+MLE MY   GIGLAAVQ+G   
Sbjct: 1   MAIRRILTVDNAADLATLKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           R++V+DL      K P  F+NP+I+  S+D   Y+EGCLS+P+Y  +V+R + +T+RYM+
Sbjct: 61  RVIVMDLAREGEDKAPRYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +  A+GL A C+QHE+DHL G+LFIDHLSRL+RD    K+ K  +
Sbjct: 121 YQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171


>gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
           3As]
          Length = 168

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTIIQYPDPRLYTVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSEE--RNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLLGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|325267954|ref|ZP_08134603.1| peptide deformylase [Kingella denitrificans ATCC 33394]
 gi|324980640|gb|EGC16303.1| peptide deformylase [Kingella denitrificans ATCC 33394]
          Length = 167

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY+  GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAKPVAQVDDRIRTLVADMAETMYAAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++      +    IT  D  + ++EGCLS+P     V R+  +TV Y+D   +
Sbjct: 61  IDLSEEHNQLL---ALINPTITKKDGETTFEEGCLSVPGIYDTVSRAETVTVEYLDTEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHL G LF+++LS LK+  I  K+ K  + 
Sbjct: 118 PQSLDADGLLAICIQHELDHLAGKLFVEYLSPLKQSRIKSKLKKRQRE 165


>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
 gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
          Length = 172

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 111/168 (66%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K+ ++ +PD  L  V++P++ +++ I  L+ +MLE MY  +GIGLAA QI V  RLVV
Sbjct: 1   MAKRIILSYPDKRLHTVAKPVQGVDARIKALVADMLETMYDAEGIGLAATQIDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  ++  P+V INP+I   SD+  + +EGCLS+P     V RS  + V+ +D N +
Sbjct: 61  IDVSEERNK--PIVLINPEITWASDEKVLNEEGCLSVPGIYDGVMRSTSVKVQALDENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + I ADGLLA C+QHELDHL G +F+++LS LKR+ I  K+ K  + 
Sbjct: 119 MRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLKRNRIKSKLLKQQRE 166


>gi|254229999|ref|ZP_04923400.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269966999|ref|ZP_06181069.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|151937501|gb|EDN56358.1| peptide deformylase [Vibrio sp. Ex25]
 gi|269828393|gb|EEZ82657.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 203

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 32  MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 91

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 92  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 148

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 149 EFTFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 198


>gi|54310617|ref|YP_131637.1| peptide deformylase [Photobacterium profundum SS9]
 gi|46915060|emb|CAG21835.1| Putative polypeptide deformylase [Photobacterium profundum SS9]
          Length = 169

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++IFPD  LR +++P+E I  DI N++D+MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +      +    IT        +EGCLS+P  RA V R+A ++V+ +D +  
Sbjct: 61  IDISEERDQPM---VLINPEITDKRGEDGIEEGCLSVPGSRALVSRAAEVSVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 PFSFEADDLLAICVQHELDHLAGKLFVDYLSPLKRQRIKQKLEKMKRFNE 167


>gi|197287101|ref|YP_002152973.1| peptide deformylase [Proteus mirabilis HI4320]
 gi|227354903|ref|ZP_03839317.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
 gi|194684588|emb|CAR46445.1| polypeptide deformylase [Proteus mirabilis HI4320]
 gi|227164985|gb|EEI49824.1| polypeptide deformylase [Proteus mirabilis ATCC 29906]
          Length = 171

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   +K     +    +   +  +  +EGCLSIP+ RA V R+  + VR +D N Q
Sbjct: 61  IDISETRDQKL---VLINPELLDQEGDTGIEEGCLSIPEQRAFVPRAERVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + R
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKRR 166


>gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis KIM 10]
 gi|45440100|ref|NP_991639.1| peptide deformylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51597955|ref|YP_072146.1| peptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108809222|ref|YP_653138.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|108813987|ref|YP_649754.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|145597483|ref|YP_001161558.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|150260710|ref|ZP_01917438.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|153950090|ref|YP_001402830.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162418261|ref|YP_001605206.1| peptide deformylase [Yersinia pestis Angola]
 gi|165927898|ref|ZP_02223730.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936499|ref|ZP_02225067.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010552|ref|ZP_02231450.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213183|ref|ZP_02239218.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398768|ref|ZP_02304292.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419139|ref|ZP_02310892.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425700|ref|ZP_02317453.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167468246|ref|ZP_02332950.1| peptide deformylase [Yersinia pestis FV-1]
 gi|170022577|ref|YP_001719082.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186897151|ref|YP_001874263.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|218927448|ref|YP_002345323.1| peptide deformylase [Yersinia pestis CO92]
 gi|229836276|ref|ZP_04456443.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|229840100|ref|ZP_04460259.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842182|ref|ZP_04462337.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904518|ref|ZP_04519629.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|270488264|ref|ZP_06205338.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294502316|ref|YP_003566378.1| peptide deformylase [Yersinia pestis Z176003]
 gi|23396545|sp|Q8ZJ79|DEF_YERPE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81691640|sp|Q664V4|DEF_YERPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123073067|sp|Q1CCX6|DEF_YERPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123372104|sp|Q1C2X9|DEF_YERPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158514064|sp|A4TH23|DEF_YERPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012067|sp|A7FNK2|DEF_YERP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238687338|sp|A9R927|DEF_YERPG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238688470|sp|B1JJH8|DEF_YERPY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238691391|sp|B2K504|DEF_YERPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia pestis KIM 10]
 gi|45434955|gb|AAS60516.1| polypeptide deformylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51591237|emb|CAH22903.1| polypeptide deformylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777635|gb|ABG20154.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|108781135|gb|ABG15193.1| peptide deformylase [Yersinia pestis Antiqua]
 gi|115346059|emb|CAL18925.1| polypeptide deformylase [Yersinia pestis CO92]
 gi|145209179|gb|ABP38586.1| peptide deformylase [Yersinia pestis Pestoides F]
 gi|149290118|gb|EDM40195.1| polypeptide deformylase [Yersinia pestis CA88-4125]
 gi|152961585|gb|ABS49046.1| peptide deformylase [Yersinia pseudotuberculosis IP 31758]
 gi|162351076|gb|ABX85024.1| peptide deformylase [Yersinia pestis Angola]
 gi|165915615|gb|EDR34224.1| peptide deformylase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920174|gb|EDR37475.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990642|gb|EDR42943.1| peptide deformylase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205481|gb|EDR49961.1| peptide deformylase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963133|gb|EDR59154.1| peptide deformylase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051272|gb|EDR62680.1| peptide deformylase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055390|gb|EDR65184.1| peptide deformylase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749111|gb|ACA66629.1| peptide deformylase [Yersinia pseudotuberculosis YPIII]
 gi|186700177|gb|ACC90806.1| peptide deformylase [Yersinia pseudotuberculosis PB1/+]
 gi|229678636|gb|EEO74741.1| peptide deformylase [Yersinia pestis Nepal516]
 gi|229690492|gb|EEO82546.1| peptide deformylase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696466|gb|EEO86513.1| peptide deformylase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706344|gb|EEO92351.1| peptide deformylase [Yersinia pestis Pestoides A]
 gi|262360396|gb|ACY57117.1| peptide deformylase [Yersinia pestis D106004]
 gi|262364346|gb|ACY60903.1| peptide deformylase [Yersinia pestis D182038]
 gi|270336768|gb|EFA47545.1| peptide deformylase [Yersinia pestis KIM D27]
 gi|294352775|gb|ADE63116.1| peptide deformylase [Yersinia pestis Z176003]
 gi|320013375|gb|ADV96946.1| peptide deformylase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 170

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDISENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|156972726|ref|YP_001443633.1| peptide deformylase [Vibrio harveyi ATCC BAA-1116]
 gi|166198526|sp|A7N121|DEF_VIBHB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156524320|gb|ABU69406.1| hypothetical protein VIBHAR_00391 [Vibrio harveyi ATCC BAA-1116]
          Length = 172

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFEADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|325963040|ref|YP_004240946.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469127|gb|ADX72812.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 194

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVAEPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R     V  +D N  
Sbjct: 61  YRI-----DGVEGHIINPVLENSDDFQQDQVEGCLSIPGLGFPVRRYRSTRVTGVDMNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +GLLA C QHE DHL+GIL+ D L    R    + +  
Sbjct: 116 PVTVEGEGLLARCFQHENDHLDGILYTDRLEGEDRKSALRSIRN 159


>gi|229508331|ref|ZP_04397835.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229508830|ref|ZP_04398321.1| peptide deformylase [Vibrio cholerae B33]
 gi|229515915|ref|ZP_04405372.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229517101|ref|ZP_04406547.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229520217|ref|ZP_04409644.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229606606|ref|YP_002877254.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|229342811|gb|EEO07802.1| peptide deformylase [Vibrio cholerae TM 11079-80]
 gi|229346164|gb|EEO11136.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229347015|gb|EEO11977.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229354105|gb|EEO19037.1| peptide deformylase [Vibrio cholerae B33]
 gi|229354604|gb|EEO19526.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229369261|gb|ACQ59684.1| peptide deformylase [Vibrio cholerae MJ-1236]
          Length = 194

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISE--TRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
 gi|158513298|sp|A5EWL8|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
          Length = 181

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 9/177 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PDP LR  ++P+   +  +  ++ NM E MY   GIGLAA Q+ +  RL+V
Sbjct: 1   MAIYSILIHPDPRLRLPAQPVTHFDDALAEIVQNMYETMYHFHGIGLAAPQVNIQQRLIV 60

Query: 61  IDLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +D+                + +V +NP+I+  S++   Y+EGCLS+P+  A V R A IT
Sbjct: 61  MDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSEECQDYEEGCLSLPNQYALVTRPANIT 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           VRY D     Q   A GLL+ C+QHE+DHLNG LFIDHLSRLKR+ + KK++K ++ 
Sbjct: 121 VRYQDITGATQERAAQGLLSVCIQHEIDHLNGGLFIDHLSRLKRERLEKKLAKSLKN 177


>gi|149190435|ref|ZP_01868706.1| peptide deformylase [Vibrio shilonii AK1]
 gi|148835689|gb|EDL52655.1| peptide deformylase [Vibrio shilonii AK1]
          Length = 169

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I  ++D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEAVTPEIQKVVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   +      +    IT        +EGCLS+P  RA V R+A ++V+ ++ + +
Sbjct: 61  IDISDTRDQPM---VLINPEITEKRGEDGIEEGCLSVPGARALVPRAAEVSVKALNRDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K+ K+ +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIKDKLEKIKR 164


>gi|319775435|ref|YP_004137923.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|329122537|ref|ZP_08251120.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
 gi|317450026|emb|CBY86240.1| peptide deformylase [Haemophilus influenzae F3047]
 gi|327473142|gb|EGF18566.1| peptide deformylase [Haemophilus aegyptius ATCC 11116]
          Length = 169

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|320154884|ref|YP_004187263.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|319930196|gb|ADV85060.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISESRNE--PMVLINPEILEKHGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|269962644|ref|ZP_06176989.1| peptide deformylase [Vibrio harveyi 1DA3]
 gi|269832567|gb|EEZ86681.1| peptide deformylase [Vibrio harveyi 1DA3]
          Length = 193

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ V  R+VV
Sbjct: 22  MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDVHKRIVV 81

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 82  IDISE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 138

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 139 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 188


>gi|27364480|ref|NP_760008.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|31076651|sp|Q8DDE3|DEF1_VIBVU RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|27360599|gb|AAO09535.1| peptide deformylase [Vibrio vulnificus CMCP6]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238758793|ref|ZP_04619967.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
 gi|238703090|gb|EEP95633.1| Peptide deformylase 2 [Yersinia aldovae ATCC 35236]
          Length = 170

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|331699449|ref|YP_004335688.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326954138|gb|AEA27835.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 190

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+L   +RP+ + +  +  L+D+M E M +  G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIRIIGDPVLHAPTRPVVEFDDALRELVDDMFETMAAAHGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKN------PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   +          V    +I     D    +EGCLS+P  +    R+ +  V  
Sbjct: 61  YDCPDEVTKTMARGVVVNPVLETSEIPETMPDPEEDEEGCLSVPGEQFPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D + Q       G LA C QHE+DHL+G L+++ L+       +KKM K
Sbjct: 121 VDVDGQPVEAEGRGFLARCFQHEVDHLDGHLYVERLTGRHL-RASKKMLK 169


>gi|312115223|ref|YP_004012819.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220352|gb|ADP71720.1| peptide deformylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 176

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PD ILR  S+ +E ++ ++  L ++MLE MY+  GIGLAAVQIGVL RL+V
Sbjct: 1   MAIRSIITIPDAILRETSKTVETVDDEVRALANDMLETMYAAPGIGLAAVQIGVLRRLIV 60

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q      KNP+V INP+I+T  D   V++EGCLSIP   A+V+R A + VRY+D   
Sbjct: 61  MDAQKGDEKGKNPVVLINPEILTHGDTPRVHEEGCLSIPQMYAEVERPALVRVRYVDAEG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q      L AT +QHE+DHL G LFIDHLSRLKR ++ +K  KL + R
Sbjct: 121 KQQERDFSDLEATLVQHEIDHLEGRLFIDHLSRLKRTLLIRKYHKLQRER 170


>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
 gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
           bacterium TW-7]
          Length = 168

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKDVADVDDQVRQIVKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          +    I   D  ++ +EGCLS+P+  A V R+  +TV  ++ N +
Sbjct: 61  IDVSEERDEPL---VLINPQIIKKDGSTISEEGCLSVPNSYAKVDRAETVTVAALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|145633869|ref|ZP_01789590.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145635938|ref|ZP_01791624.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229845579|ref|ZP_04465706.1| peptide deformylase [Haemophilus influenzae 6P18H1]
 gi|144985241|gb|EDJ92084.1| peptide deformylase [Haemophilus influenzae 3655]
 gi|145266797|gb|EDK06815.1| peptide deformylase [Haemophilus influenzae PittAA]
 gi|229811514|gb|EEP47216.1| peptide deformylase [Haemophilus influenzae 6P18H1]
          Length = 169

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
 gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
           SM9913]
          Length = 168

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR +++ +  ++  +  ++ +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MARLEVLRFPDERLRTIAKEVTVVDDQVREIVKDMLETMYDENGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P   A V R+  +TV  ++   +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGSTVS-EEGCLSVPHSYAKVDRAETVTVAALNEEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I+ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +
Sbjct: 118 EFILDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAK 164


>gi|271502213|ref|YP_003335239.1| peptide deformylase [Dickeya dadantii Ech586]
 gi|270345768|gb|ACZ78533.1| peptide deformylase [Dickeya dadantii Ech586]
          Length = 169

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRTQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELDADGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|229524948|ref|ZP_04414353.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|229338529|gb|EEO03546.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 194

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+MLE MY+ +GIGLAA Q+ +  R+VV
Sbjct: 26  MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 85

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q
Sbjct: 86  IDISE--TRDLPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQ 142

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 143 EYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 192


>gi|303245828|ref|ZP_07332110.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
 gi|302492611|gb|EFL52479.1| peptide deformylase [Desulfovibrio fructosovorans JJ]
          Length = 177

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P PIL   S P+  +  +I  L D+M E MY+  G+GLAA Q+G   RLVVI
Sbjct: 1   MLLEILKYPHPILAAKSEPVPGVTPEIRQLADDMAETMYANQGVGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  +  +NP I     +    +  CLS+ DYRA+VKR+A +TV   D +   
Sbjct: 61  DLSGPDKREERINLVNPVITKAEGEQEDDEG-CLSVRDYRANVKRAATVTVCATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + +
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWAKQK 167


>gi|68249189|ref|YP_248301.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|145629886|ref|ZP_01785678.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145637962|ref|ZP_01793602.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145639368|ref|ZP_01794973.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145642285|ref|ZP_01797850.1| peptide deformylase [Haemophilus influenzae R3021]
 gi|148826745|ref|YP_001291498.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148827778|ref|YP_001292531.1| peptide deformylase [Haemophilus influenzae PittGG]
 gi|229846679|ref|ZP_04466787.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|81336405|sp|Q4QMV6|DEF_HAEI8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198517|sp|A5UEB4|DEF_HAEIE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|166198518|sp|A5UH92|DEF_HAEIG RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|68057388|gb|AAX87641.1| peptide deformylase [Haemophilus influenzae 86-028NP]
 gi|144977740|gb|EDJ87687.1| peptide deformylase [Haemophilus influenzae 22.1-21]
 gi|145268853|gb|EDK08816.1| peptide deformylase [Haemophilus influenzae PittHH]
 gi|145271415|gb|EDK11327.1| peptide deformylase [Haemophilus influenzae PittII]
 gi|145273041|gb|EDK12922.1| peptide deformylase [Haemophilus influenzae 22.4-21]
 gi|148716905|gb|ABQ99115.1| peptide deformylase [Haemophilus influenzae PittEE]
 gi|148719020|gb|ABR00148.1| hypothetical protein CGSHiGG_06235 [Haemophilus influenzae PittGG]
 gi|229810772|gb|EEP46490.1| peptide deformylase [Haemophilus influenzae 7P49H1]
 gi|301169340|emb|CBW28939.1| peptide deformylase [Haemophilus influenzae 10810]
 gi|309751783|gb|ADO81767.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2866]
          Length = 169

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|226329516|ref|ZP_03805034.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
 gi|225202702|gb|EEG85056.1| hypothetical protein PROPEN_03425 [Proteus penneri ATCC 35198]
          Length = 174

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK++++I  ++D+M E MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLHVLHYPDERLRTIAKPVEKVDAEIQKIVDDMFETMYLEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +  ++  +  +EGCLSIP+ RA + R+  + VR +D N Q
Sbjct: 61  I---DVSETRDERLVLINPELLDANGDTGIEEGCLSIPEQRAFIPRAEHVKVRALDYNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKVEKLDKL 165


>gi|260914694|ref|ZP_05921160.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
 gi|260631293|gb|EEX49478.1| peptide deformylase [Pasteurella dagmatis ATCC 43325]
          Length = 170

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  ++++PD  L+ V++P+E++N  I  ++D+M E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MAKLNVLVYPDDRLKIVAKPVEEVNDKIREIVDDMFETMYHEEGIGLAATQVDIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K     +    I  S   +  +EGCLS+P +R  V R   +TV+ +D N +
Sbjct: 61  I---DVEGTKENQYVLINPEIIESCGETGIEEGCLSLPGFRGFVPRKEKVTVKALDRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLNADGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLVKLQKQ 165


>gi|290477161|ref|YP_003470076.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
 gi|289176509|emb|CBJ83318.1| peptide deformylase [Xenorhabdus bovienii SS-2004]
          Length = 170

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+EK+++ I ++ID+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRTIAKPVEKVDAGIQSIIDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++  ++             +  +EGCLS+P+ RA V R   + ++ +D + Q
Sbjct: 61  IDVSENRDQRLVLINPELMNE---VGATGIEEGCLSVPEQRAFVPRFEQVKIKALDYHGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LKR  I +K+ K+ +LR
Sbjct: 118 QFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKVEKIDRLR 166


>gi|163803316|ref|ZP_02197194.1| peptide deformylase [Vibrio sp. AND4]
 gi|159172886|gb|EDP57725.1| peptide deformylase [Vibrio sp. AND4]
          Length = 172

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E++  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVAKPVEEVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSE--TRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EYTFDADDLLAICVQHELDHLMGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|238028945|ref|YP_002913176.1| polypeptide deformylase [Burkholderia glumae BGR1]
 gi|237878139|gb|ACR30472.1| Polypeptide deformylase [Burkholderia glumae BGR1]
          Length = 167

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+  ++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAVVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +  +     VFINP+I+  SD   +Y+EGCLS+P    +V+R   + VR +D   Q
Sbjct: 61  IDTSEDKNELR--VFINPEIVWSSDGKQIYEEGCLSVPGVYDEVERPDHVRVRALDVQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK++ I  KM KL +
Sbjct: 119 QFELDCEGLLAVCVQHEMDHLLGRVFVQYLSPLKQNRIKSKMKKLER 165


>gi|16272565|ref|NP_438782.1| peptide deformylase [Haemophilus influenzae Rd KW20]
 gi|260581531|ref|ZP_05849338.1| peptide deformylase [Haemophilus influenzae RdAW]
 gi|1169264|sp|P44786|DEF_HAEIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|1573618|gb|AAC22282.1| polypeptide deformylase (def) [Haemophilus influenzae Rd KW20]
 gi|260091805|gb|EEW75761.1| peptide deformylase [Haemophilus influenzae RdAW]
          Length = 169

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ K+N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|222054052|ref|YP_002536414.1| peptide deformylase [Geobacter sp. FRC-32]
 gi|221563341|gb|ACM19313.1| peptide deformylase [Geobacter sp. FRC-32]
          Length = 171

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + K ++ FPDP L++  +P+  IN  +  L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIKKILTFPDPELKKKCQPVTVINDKVRELVRDMAETMYDAPGVGLAAPQIGVHQRVVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP +I  +D  +  +EGCLSIP Y A+V+R   + V+ ++   + 
Sbjct: 61  DVTGKDEQPQLLVAINP-VIVHADGEAYEEEGCLSIPKYAANVRRHERVVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  +
Sbjct: 120 VTFKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162


>gi|134098682|ref|YP_001104343.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003631|ref|ZP_06561604.1| peptide deformylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133911305|emb|CAM01418.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 182

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   + ++ NL+ ++ + M    G G+AA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTRAEEVVDFDKELRNLVQDLWDTMEDQGGAGIAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                 A        +NP      ++     EGCLSIP    D +R   +  R  + + +
Sbjct: 61  YHCDGFAG-----HLVNPTFTAVDEELQFGPEGCLSIPGMSWDCERYRNVVARGWNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I    LLA C+QHE DHL+G+LF+D L    R    +++ 
Sbjct: 116 PVEIEGTDLLARCIQHETDHLDGVLFVDRLDEQTRKAAMREIR 158


>gi|325000006|ref|ZP_08121118.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 182

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M++  G GLAA QIGV  R+ V
Sbjct: 1   MSIQPVRLFGDPVLRTRATEVTDFDAELRKLVADLTDTMHAEGGAGLAAPQIGVSRRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +    A        INP      ++  V  EGCLSIP    D +R   +  R  D + +
Sbjct: 61  YECDGFAG-----HLINPTWEAVGEEEQVGPEGCLSIPGLGFDCRRKLTVVGRGWDMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            Q++    LLA C+QHE DHL+G+LF+D L    R    +++ +
Sbjct: 116 PQVVEGSELLARCIQHETDHLDGVLFVDRLDAETRKRAMREIRE 159


>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
 gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
          Length = 174

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/168 (45%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K+ +++ PDP L+++  P+  +  ++  L D+ML  MY   GIGLAA QIGVL RL+V+
Sbjct: 3   MKRNIILHPDPRLKKLCAPVTDMTDELRALADDMLATMYDAPGIGLAAPQIGVLNRLIVM 62

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D  ++   +  P++  NP++I  SD  S Y+EGCLSIPD  ADV R A + VR++D +  
Sbjct: 63  DCVKEEGEKPRPLIMFNPEVIASSDIESTYEEGCLSIPDQFADVTRPAEVDVRWIDRDGN 122

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                   L ATC+QHE+DHL+G LFID+L  L+R MIT+KM+KL + 
Sbjct: 123 EHTETFSKLWATCVQHEIDHLDGKLFIDYLKPLRRQMITRKMTKLKRE 170


>gi|124385914|ref|YP_001028237.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|254203663|ref|ZP_04910023.1| polypeptide deformylase [Burkholderia mallei FMH]
 gi|124293934|gb|ABN03203.1| peptide deformylase [Burkholderia mallei NCTC 10229]
 gi|147745175|gb|EDK52255.1| polypeptide deformylase [Burkholderia mallei FMH]
          Length = 216

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 50  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 109

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 110 IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 167

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 168 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 214


>gi|238792969|ref|ZP_04636599.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
 gi|238727823|gb|EEQ19347.1| Peptide deformylase 2 [Yersinia intermedia ATCC 29909]
          Length = 170

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHKQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|224826194|ref|ZP_03699297.1| peptide deformylase [Lutiella nitroferrum 2002]
 gi|224601831|gb|EEG08011.1| peptide deformylase [Lutiella nitroferrum 2002]
          Length = 167

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V+RP+  ++  I  LID+M E MY  +GIGLAA Q+ V  R+VV
Sbjct: 1   MALLTILHYPDERLHKVARPVGAVDERIRQLIDDMAETMYECNGIGLAATQVNVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        V      I      +VY+EGCLS+P     V RS ++ VR ++ N +
Sbjct: 61  IDVSEEKSALTAFV---NPEIVERRGDTVYEEGCLSVPGIYDKVHRSEWVRVRALNRNGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  DGLLA C+QHE+DHL+G +F+D+LS+LK+  I  KM K  +
Sbjct: 118 PFEIETDGLLAICIQHEIDHLDGKVFVDYLSQLKQSRIKAKMKKREK 164


>gi|254251081|ref|ZP_04944399.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
 gi|124893690|gb|EAY67570.1| N-formylmethionyl-tRNA deformylase [Burkholderia dolosa AUO158]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++ N +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDRVRVRALNENGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|126441948|ref|YP_001057204.1| polypeptide deformylase [Burkholderia pseudomallei 668]
 gi|126453149|ref|YP_001064443.1| polypeptide deformylase [Burkholderia pseudomallei 1106a]
 gi|217424946|ref|ZP_03456442.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|226194603|ref|ZP_03790198.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237810338|ref|YP_002894789.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242315752|ref|ZP_04814768.1| peptide deformylase [Burkholderia pseudomallei 1106b]
 gi|254182253|ref|ZP_04888850.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|254197101|ref|ZP_04903524.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|126221441|gb|ABN84947.1| peptide deformylase [Burkholderia pseudomallei 668]
 gi|126226791|gb|ABN90331.1| peptide deformylase [Burkholderia pseudomallei 1106a]
 gi|169653843|gb|EDS86536.1| polypeptide deformylase [Burkholderia pseudomallei S13]
 gi|184212791|gb|EDU09834.1| polypeptide deformylase [Burkholderia pseudomallei 1655]
 gi|217391966|gb|EEC31992.1| peptide deformylase [Burkholderia pseudomallei 576]
 gi|225933304|gb|EEH29296.1| peptide deformylase [Burkholderia pseudomallei Pakistan 9]
 gi|237506162|gb|ACQ98480.1| peptide deformylase [Burkholderia pseudomallei MSHR346]
 gi|242138991|gb|EES25393.1| peptide deformylase [Burkholderia pseudomallei 1106b]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI++ I  LI +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDARIKTLIADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +  +           +IT  +  + Y+EGCLS+P     V R+  +TV  ++ N +
Sbjct: 61  MDLSEERNEPR---VFINPVITHKNGETTYEEGCLSVPGIYDTVTRAETVTVEALNENGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  + 
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIRTKLKKRQRQ 165


>gi|126449977|ref|YP_001081879.1| polypeptide deformylase [Burkholderia mallei NCTC 10247]
 gi|251767985|ref|ZP_02269083.2| peptide deformylase [Burkholderia mallei PRL-20]
 gi|254177135|ref|ZP_04883792.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|126242847|gb|ABO05940.1| peptide deformylase [Burkholderia mallei NCTC 10247]
 gi|160698176|gb|EDP88146.1| polypeptide deformylase [Burkholderia mallei ATCC 10399]
 gi|243061150|gb|EES43336.1| peptide deformylase [Burkholderia mallei PRL-20]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|254497986|ref|ZP_05110749.1| peptide deformylase [Legionella drancourtii LLAP12]
 gi|254352763|gb|EET11535.1| peptide deformylase [Legionella drancourtii LLAP12]
          Length = 171

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PDP LR +S+P+   +  +  LID+M E MY   G+GLAA QIGV  RL V
Sbjct: 1   MAIHKILYLPDPRLRELSKPVVTFDDTLQTLIDDMFETMYDAHGVGLAAAQIGVSLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +     I    I  S+  S + EGCLS+P     V R+  +TV+ +D + +
Sbjct: 61  IDILGDKKNQI---VIINPEIIASEGESKFDEGCLSVPGAYDTVTRAEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I A+GLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIKAEGLLAECLQHEIDHMNGKLFIDMLSPLKKAMARKKLDKFKRQ 165


>gi|284159413|ref|YP_440687.3| peptide deformylase [Burkholderia thailandensis E264]
 gi|83652775|gb|ABC36838.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 179

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 13  MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 73  IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 131 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 177


>gi|123444064|ref|YP_001008034.1| peptide deformylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|238788878|ref|ZP_04632668.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|332163227|ref|YP_004299804.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|158512897|sp|A1JRZ1|DEF_YERE8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122091025|emb|CAL13908.1| polypeptide deformylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|238722905|gb|EEQ14555.1| Peptide deformylase 2 [Yersinia frederiksenii ATCC 33641]
 gi|318607709|emb|CBY29207.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667457|gb|ADZ44101.1| peptide deformylase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861818|emb|CBX71990.1| peptide deformylase [Yersinia enterocolitica W22703]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|189348993|ref|YP_001944621.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|189333015|dbj|BAG42085.1| polypeptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 167

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|126172288|ref|YP_001048437.1| peptide deformylase [Shewanella baltica OS155]
 gi|152998582|ref|YP_001364263.1| peptide deformylase [Shewanella baltica OS185]
 gi|160873157|ref|YP_001552473.1| peptide deformylase [Shewanella baltica OS195]
 gi|217971247|ref|YP_002355998.1| peptide deformylase [Shewanella baltica OS223]
 gi|125995493|gb|ABN59568.1| peptide deformylase [Shewanella baltica OS155]
 gi|151363200|gb|ABS06200.1| peptide deformylase [Shewanella baltica OS185]
 gi|160858679|gb|ABX47213.1| peptide deformylase [Shewanella baltica OS195]
 gi|217496382|gb|ACK44575.1| peptide deformylase [Shewanella baltica OS223]
 gi|315265382|gb|ADT92235.1| peptide deformylase [Shewanella baltica OS678]
          Length = 170

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVERPK---VFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|134093408|ref|YP_001098483.1| peptide deformylase [Herminiimonas arsenicoxydans]
 gi|133737311|emb|CAL60354.1| Peptide deformylase (PDF) [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  140 bits (353), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+   ++ I  L+ +M E MY   G+GLAA Q+ V  +++V
Sbjct: 1   MSILNILRYPDSRLHKIAKPVTTFDARIKTLVADMAETMYDAPGVGLAASQVDVHEQVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID  +   R     +INP++I  S +  +Y EGCLS+P     V+R A + VR  D + +
Sbjct: 61  IDTSE--TRTELRAYINPELIWVSPEMQIYDEGCLSVPGVYDGVERHAKVKVRAYDADGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 QFELEAEGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKTKMLKEERE 166


>gi|255326017|ref|ZP_05367105.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296908|gb|EET76237.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 228

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 40  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 99

Query: 62  DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP +      T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 100 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 159

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 160 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 206


>gi|157372744|ref|YP_001480733.1| peptide deformylase [Serratia proteamaculans 568]
 gi|167012065|sp|A8GKG5|DEF_SERP5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157324508|gb|ABV43605.1| peptide deformylase [Serratia proteamaculans 568]
          Length = 169

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDDRLRKVAAPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAAAVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|300741380|ref|ZP_07071401.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380565|gb|EFJ77127.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP++          D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVTPRGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++ K     KK+ K
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168


>gi|114777061|ref|ZP_01452081.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
 gi|114552582|gb|EAU55042.1| Formylmethionine deformylase [Mariprofundus ferrooxydans PV-1]
          Length = 180

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/179 (40%), Positives = 101/179 (56%), Gaps = 12/179 (6%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++I PD  L +VSRP+E  ++ ++  LI +M + MY   G+GLAA Q+G L R+ 
Sbjct: 1   MAVREILIHPDDRLVQVSRPVEFPLSDEVKELIRDMADTMYDAPGVGLAAPQVGELLRIA 60

Query: 60  VIDLQDHAHRKNPM-----------VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           V D                      V+INP+ +  SD+   ++EGCLS+P+   DV R A
Sbjct: 61  VTDTVWRDKEVRHDGDLPGGHRELKVWINPEFLWKSDEMETWEEGCLSVPETWGDVSRPA 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + +R+ D +        DG  A  LQHE DHL+G LFID+LS LKR MITKKM KL +
Sbjct: 121 ALRLRWFDEHGVQHEQDFDGFQAVALQHEFDHLDGKLFIDYLSPLKRRMITKKMKKLYK 179


>gi|294138834|ref|YP_003554812.1| polypeptide deformylase [Shewanella violacea DSS12]
 gi|293325303|dbj|BAJ00034.1| polypeptide deformylase [Shewanella violacea DSS12]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P+ + N+ +   IDNM E MY   GIGLAA Q+    +L++
Sbjct: 1   MSLLKVLRFPDERLRTFAKPVTEFNTGLQTQIDNMFETMYEEKGIGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGIYADIERAEHVTIKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLEADGLLAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
 gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
          Length = 171

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/170 (41%), Positives = 108/170 (63%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +++RP+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRYPDPRLNKIARPVIQVDERIRQLVSDMFETMYEARGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+I+  S++  V  EGCLS+P     V+R A + V  +D N Q
Sbjct: 61  IDVSEERND--PLVLINPRIVAASEEMMVGDEGCLSVPTIYDRVERHAQVQVEALDRNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                ADGLL+ C+QHE+DHL G +F+++LS LKR+ I  KM  + + RD
Sbjct: 119 RYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLKRNRIRSKM--IKRGRD 166


>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
 gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V++PD  L  V  P+E+++  +   ID+M E MY  +GIGLAA Q+GVL R++ 
Sbjct: 1   MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEGIGLAAPQVGVLKRVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S   +  +EGCLSIP +RA V R   + V+ ++   +
Sbjct: 61  IDIEGDKTNQV---VLINPEILESSGETGIEEGCLSIPGHRALVPRKEKVKVKALNRQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             II AD L A C+QHE+DHLNG+LF+DH+S LKR  I +KM KL + 
Sbjct: 118 EIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQKLKKQ 165


>gi|238754205|ref|ZP_04615563.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
 gi|238707701|gb|EEQ00061.1| Peptide deformylase 2 [Yersinia ruckeri ATCC 29473]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  +++V
Sbjct: 1   MSVLQVLHYPDERLRKVATPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  I +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKIKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLDKLAKL 165


>gi|194367357|ref|YP_002029967.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
 gi|238693439|sp|B4SKH7|DEF_STRM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|194350161|gb|ACF53284.1| peptide deformylase [Stenotrophomonas maltophilia R551-3]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 75/170 (44%), Positives = 104/170 (61%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPI---EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  I   E        L+DNM + MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIDAAEVTTPAFQELVDNMFQTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           + Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 DGQQQELEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|238058215|sp|B5YIL7|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 165

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PD +L++ +  I +IN D+  LIDNM+E MY+ +GIGLAA Q+GVL RL+V
Sbjct: 1   MAILEIKKYPDEVLKKKAETISEINGDLQKLIDNMIETMYNANGIGLAAPQVGVLKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       ++ +V INP+ IT S+   + +EGCLS+P +   +KR   + V+ +D N +
Sbjct: 61  VDTSPREQNQSLIVLINPE-ITDSEGEILSEEGCLSLPGFTTRLKRKERVIVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I A GLLA  LQHE+DHL+GIL ID +S LKR++  KK  
Sbjct: 120 EIEIEATGLLARALQHEIDHLDGILLIDKISPLKRELFRKKFK 162


>gi|325526701|gb|EGD04225.1| peptide deformylase [Burkholderia sp. TJI49]
          Length = 167

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIIWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 165


>gi|149185875|ref|ZP_01864190.1| Peptide deformylase [Erythrobacter sp. SD-21]
 gi|148830436|gb|EDL48872.1| Peptide deformylase [Erythrobacter sp. SD-21]
          Length = 188

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/186 (45%), Positives = 114/186 (61%), Gaps = 19/186 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  PDP L+ VS P+ + + ++  L+ +M E MY   GIGLAA+Q+GV  R++V
Sbjct: 1   MAIREILEVPDPRLKVVSEPVTEFDDELRELVSDMFETMYDAPGIGLAAIQVGVPKRVLV 60

Query: 61  IDLQDH-------------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYR 101
           IDLQ                       +K P VF+NP+I+  ++D + YQEGCLS+PD  
Sbjct: 61  IDLQPEDEDAEGEVCNHGGHEHVHYPTKKEPRVFVNPEILDPAEDLATYQEGCLSVPDIF 120

Query: 102 ADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKK 161
           ADV R A   VRY D   +      +GL+ATCLQHE+DHL GILFIDHLSRLKR+M  KK
Sbjct: 121 ADVDRPATCRVRYQDLEGETHEEELEGLMATCLQHEMDHLEGILFIDHLSRLKRNMALKK 180

Query: 162 MSKLVQ 167
           + KL +
Sbjct: 181 LKKLRE 186


>gi|37681409|ref|NP_936018.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930925|sp|Q7MGK6|DEF2_VIBVY RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|37200161|dbj|BAC95989.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 202

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 111/170 (65%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+EK+  +I  ++D+M+E MY  +GIGLAA Q+ +  R+VV
Sbjct: 33  MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 92

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 93  IDISESRNE--PMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGH 149

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 150 EFTLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKRFNE 199


>gi|238783197|ref|ZP_04627223.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
 gi|238715993|gb|EEQ07979.1| Peptide deformylase 2 [Yersinia bercovieri ATCC 43970]
          Length = 170

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELETDDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|167834978|ref|ZP_02461861.1| peptide deformylase [Burkholderia thailandensis MSMB43]
          Length = 167

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEEKNELR--VFINPELVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 TFEIDCEGLLAVCIQHEMDHLIGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|165932853|ref|YP_001649642.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
 gi|165907940|gb|ABY72236.1| peptide deformylase [Rickettsia rickettsii str. Iowa]
          Length = 175

 Score =  140 bits (352), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP++I  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEVIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|77359005|ref|YP_338580.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587108|sp|Q3IDI2|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++ +  ++  +  +I +MLE MY  +GIGLAA Q+ +  R+VV
Sbjct: 1   MATLEVLRFPDERLRTIAQEVAHVDDQVRVIIKDMLETMYDENGIGLAATQVNIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +   P+V INP+II         +EGCLS+P+  A V R+  +TV  ++   +
Sbjct: 61  IDVSEERNE--PLVLINPQIIKKDGTTVS-EEGCLSVPNSYAKVDRAETVTVAALNEQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             ++ AD LLA C+QHELDHL G LFID+LS LKR  I KK+ K  +  +
Sbjct: 118 EFVLDADELLAICIQHELDHLQGKLFIDYLSPLKRQRIRKKLEKEAKFAE 167


>gi|238763701|ref|ZP_04624660.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
 gi|238698003|gb|EEP90761.1| Peptide deformylase 2 [Yersinia kristensenii ATCC 33638]
          Length = 170

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|326335909|ref|ZP_08202086.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691873|gb|EGD33835.1| peptide deformylase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 198

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V  PI     ++  LI++M + MY + G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIIAYGDPVLRKVCEPITADYPELSKLIEDMFQTMYKSHGVGLAAPQVGLPIRLFVV 60

Query: 62  DLQ------------DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KII+      ++ EGCLSIP    DV R   
Sbjct: 61  DTIGFSENEDLTREEKEYLKNFKRPFINAKIISEEGTPWMFNEGCLSIPGINEDVSRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D           GL+A  +QHE DH  G LF D+LS  K+ ++  K++ +   +
Sbjct: 121 IEIEYQDEQFNIHRETFSGLVARVIQHEYDHTEGKLFTDYLSSFKKQLLKNKLNNISNGK 180


>gi|161526293|ref|YP_001581305.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
 gi|160343722|gb|ABX16808.1| peptide deformylase [Burkholderia multivorans ATCC 17616]
          Length = 181

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|312882739|ref|ZP_07742474.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369597|gb|EFP97114.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 173

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V+ P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTFPDDRLRTVATPVENVTPEIQKFVDDMIETMYDEEGIGLAATQVDCHKRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+I+    +    +EGCLS+P  RA V R+A +TV+ +D + +
Sbjct: 61  IDVSE--TRDQPMVLINPEILDKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLTKIKRFNE 167


>gi|78224529|ref|YP_386276.1| peptide deformylase [Geobacter metallireducens GS-15]
 gi|78195784|gb|ABB33551.1| peptide deformylase [Geobacter metallireducens GS-15]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+PIL++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPNPILKKKAVPVAVINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R   +V INP  +  ++  S  +EGCLS+P Y A+V R A + V+ ++ + + 
Sbjct: 61  DVSQREERPELIVCINPVFV-HTEGESYEEEGCLSVPKYSANVHRHAKVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               A+GLLA   QHE+DHL G+LF+DHLS LKR+M  KK  ++V+ 
Sbjct: 120 VTYRAEGLLAIAFQHEIDHLEGMLFVDHLSPLKREMFKKKYRRMVEE 166


>gi|107024058|ref|YP_622385.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116691145|ref|YP_836768.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|206558867|ref|YP_002229627.1| peptide deformylase [Burkholderia cenocepacia J2315]
 gi|105894247|gb|ABF77412.1| peptide deformylase [Burkholderia cenocepacia AU 1054]
 gi|116649234|gb|ABK09875.1| peptide deformylase [Burkholderia cenocepacia HI2424]
 gi|198034904|emb|CAR50776.1| peptide deformylase [Burkholderia cenocepacia J2315]
          Length = 167

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD    Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQTYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|283458224|ref|YP_003362842.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283134257|dbj|BAI65022.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 248

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+VI  +P+L R + P+ + N ++  L+ +M E M +++G+GLAA QIGV  R+   
Sbjct: 60  AIRPIVIHGNPVLHRPAAPVTEFNDELKELVADMYETMDASNGVGLAAPQIGVGLRIFTY 119

Query: 62  DLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            +++          INP +      T   D    +EGCLS P Y   +KR+ ++TV  +D
Sbjct: 120 KMENEDGVPPRGCIINPVLTLGKISTADPDPYEEEEGCLSFPGYGFPLKRAEWVTVNGLD 179

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +       A G  A C+QHE DHL+G L+++ L++      T KM K+V+
Sbjct: 180 EHGNPVHFEATGWFARCMQHETDHLDGKLYVNRLNK----KWTGKMKKVVK 226


>gi|238797211|ref|ZP_04640712.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
 gi|238718848|gb|EEQ10663.1| Peptide deformylase 2 [Yersinia mollaretii ATCC 43969]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+++ P++++N +I  ++D+M E MY+ +GIGLAA Q+ V  +++V
Sbjct: 1   MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRDQRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|320539229|ref|ZP_08038900.1| peptide deformylase [Serratia symbiotica str. Tucson]
 gi|320030867|gb|EFW12875.1| peptide deformylase [Serratia symbiotica str. Tucson]
          Length = 169

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDDRLRKIAAPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++     +    +      +  +EGCLS+P+ RA V R+A + +R +D + +
Sbjct: 61  IDISNNRDQRL---VLINPELLEKSGETGIEEGCLSLPEQRALVPRAANVKIRALDFDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|220912431|ref|YP_002487740.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859309|gb|ACL39651.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 204

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA QIGV  R+  
Sbjct: 1   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQIGVSKRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D    + EGCLSIP     V+R     V  +D +  
Sbjct: 61  YRI-----DGVEGHIINPVLENSDDYQPDHVEGCLSIPGLGFPVRRFRATRVTGVDMHGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +G+LA C QHE DHL+G+L+ D L    R    + +  
Sbjct: 116 PVSLEGEGMLARCFQHENDHLDGVLYTDRLEGEDRKAALRSIRN 159


>gi|163751680|ref|ZP_02158899.1| polypeptide deformylase [Shewanella benthica KT99]
 gi|161328419|gb|EDP99575.1| polypeptide deformylase [Shewanella benthica KT99]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+ +   I+NM E MY   G+GLAA Q+    +L++
Sbjct: 1   MSLLKILRFPDERLRTLAKPVTEFNTGLQTQINNMFETMYEDKGVGLAATQVDYHRQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P + AD++R+  +T++ +D +  
Sbjct: 61  MDLQDEEERPK---VFINLEIVASSGHFSNEEGCLSVPGFYADIERAEHVTIKALDRDGI 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A CLQHELDHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFTLDADGLFAICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|84393441|ref|ZP_00992198.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|86147129|ref|ZP_01065445.1| peptide deformylase [Vibrio sp. MED222]
 gi|84375957|gb|EAP92847.1| peptide deformylase [Vibrio splendidus 12B01]
 gi|85835013|gb|EAQ53155.1| peptide deformylase [Vibrio sp. MED222]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 61  I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|53717762|ref|YP_106748.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|162210090|ref|YP_331761.2| peptide deformylase [Burkholderia pseudomallei 1710b]
 gi|167717517|ref|ZP_02400753.1| polypeptide deformylase [Burkholderia pseudomallei DM98]
 gi|167736559|ref|ZP_02409333.1| polypeptide deformylase [Burkholderia pseudomallei 14]
 gi|167813633|ref|ZP_02445313.1| polypeptide deformylase [Burkholderia pseudomallei 91]
 gi|167822177|ref|ZP_02453648.1| polypeptide deformylase [Burkholderia pseudomallei 9]
 gi|167843768|ref|ZP_02469276.1| polypeptide deformylase [Burkholderia pseudomallei B7210]
 gi|167892270|ref|ZP_02479672.1| polypeptide deformylase [Burkholderia pseudomallei 7894]
 gi|167900763|ref|ZP_02487968.1| polypeptide deformylase [Burkholderia pseudomallei NCTC 13177]
 gi|167908987|ref|ZP_02496078.1| polypeptide deformylase [Burkholderia pseudomallei 112]
 gi|167917029|ref|ZP_02504120.1| polypeptide deformylase [Burkholderia pseudomallei BCC215]
 gi|254188218|ref|ZP_04894730.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254258214|ref|ZP_04949268.1| peptide deformylase [Burkholderia pseudomallei 1710a]
 gi|52208176|emb|CAH34107.1| peptide deformylase [Burkholderia pseudomallei K96243]
 gi|157935898|gb|EDO91568.1| polypeptide deformylase [Burkholderia pseudomallei Pasteur 52237]
 gi|254216903|gb|EET06287.1| peptide deformylase [Burkholderia pseudomallei 1710a]
          Length = 167

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|312195559|ref|YP_004015620.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311226895|gb|ADP79750.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 183

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  +  +   + ++  L++++ E M+   G GLAA Q+GV  R+  
Sbjct: 1   MAVRDIRLFGDPVLRTKAEQVTTFDKELRKLVNDLGETMWEASGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          + P            +EGCLS+P    ++KR   +     +    
Sbjct: 61  FLDDDDEIDHLINPVLGPFSEEL----QDGEEGCLSLPGLSFELKRPERVLAIGQNMYGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G+++ CLQHE DHL+GILFID L R  +    K + +
Sbjct: 117 PVQVEGSGIVSRCLQHETDHLDGILFIDKLDRETKKAAMKAIRE 160


>gi|148978497|ref|ZP_01814971.1| peptide deformylase [Vibrionales bacterium SWAT-3]
 gi|145962404|gb|EDK27684.1| peptide deformylase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MSVLQVLTLPDDRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  PMV INP+II    +    +EGCLS+P  RA V R+A +TV+ +D +  
Sbjct: 61  IDISE--TRDEPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 118 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 167


>gi|53724672|ref|YP_101982.1| peptide deformylase [Burkholderia mallei ATCC 23344]
 gi|67642453|ref|ZP_00441209.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
 gi|121600699|ref|YP_994101.1| peptide deformylase [Burkholderia mallei SAVP1]
 gi|254208639|ref|ZP_04914987.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|254360307|ref|ZP_04976577.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|52428095|gb|AAU48688.1| polypeptide deformylase [Burkholderia mallei ATCC 23344]
 gi|121229509|gb|ABM52027.1| polypeptide deformylase [Burkholderia mallei SAVP1]
 gi|147750515|gb|EDK57584.1| polypeptide deformylase [Burkholderia mallei JHU]
 gi|148029547|gb|EDK87452.1| polypeptide deformylase [Burkholderia mallei 2002721280]
 gi|238523609|gb|EEP87046.1| peptide deformylase [Burkholderia mallei GB8 horse 4]
          Length = 167

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 103/167 (61%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|304412735|ref|ZP_07394338.1| peptide deformylase [Shewanella baltica OS183]
 gi|307305800|ref|ZP_07585546.1| peptide deformylase [Shewanella baltica BA175]
 gi|304348945|gb|EFM13360.1| peptide deformylase [Shewanella baltica OS183]
 gi|306911293|gb|EFN41719.1| peptide deformylase [Shewanella baltica BA175]
          Length = 170

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ FPD  LR  + PI + N+++   ID+M E MY   GIGLAA Q+    +L+V
Sbjct: 1   MAQLKVLQFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D +  
Sbjct: 61  MDLQDEVER---HKVFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|157828155|ref|YP_001494397.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238650436|ref|YP_002916288.1| peptide deformylase [Rickettsia peacockii str. Rustic]
 gi|157800636|gb|ABV75889.1| peptide deformylase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|238624534|gb|ACR47240.1| peptide deformylase [Rickettsia peacockii str. Rustic]
          Length = 175

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|229586451|ref|YP_002844952.1| peptide deformylase [Rickettsia africae ESF-5]
 gi|228021501|gb|ACP53209.1| Polypeptide deformylase [Rickettsia africae ESF-5]
          Length = 175

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 100/173 (57%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH     P  F    I+         +     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEMIEQAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|319897841|ref|YP_004136038.1| peptide deformylase [Haemophilus influenzae F3031]
 gi|317433347|emb|CBY81725.1| peptide deformylase [Haemophilus influenzae F3031]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+    P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVACEPVTEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLLKYKKQ 165


>gi|134297376|ref|YP_001121111.1| peptide deformylase [Burkholderia vietnamiensis G4]
 gi|134140533|gb|ABO56276.1| peptide deformylase [Burkholderia vietnamiensis G4]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQVYEEGCLSVPGIYDEVERPDHVRVRALNERGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|221201858|ref|ZP_03574895.1| peptide deformylase [Burkholderia multivorans CGD2M]
 gi|221207636|ref|ZP_03580644.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221214668|ref|ZP_03587638.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221165558|gb|EED98034.1| peptide deformylase [Burkholderia multivorans CGD1]
 gi|221172482|gb|EEE04921.1| peptide deformylase [Burkholderia multivorans CGD2]
 gi|221178278|gb|EEE10688.1| peptide deformylase [Burkholderia multivorans CGD2M]
          Length = 181

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 15  MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 75  IDVSEDKNELR--AFINPEIIWSSDGKQVYEEGCLSVPGIYDEVERPDRVRVRALNEQGE 132

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 133 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKTKMKKLER 179


>gi|145631964|ref|ZP_01787717.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|144982378|gb|EDJ89955.1| hypothetical protein CGSHi22421_05742 [Haemophilus influenzae
           R3021]
 gi|309973885|gb|ADO97086.1| N-formylmethionyl-tRNA deformylase [Haemophilus influenzae R2846]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|251788004|ref|YP_003002725.1| peptide deformylase [Dickeya zeae Ech1591]
 gi|247536625|gb|ACT05246.1| peptide deformylase [Dickeya zeae Ech1591]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIQAKPVKEVNAEIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEADGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKLARQ 165


>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 3/165 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +PDP LR   +P++K + ++  ++++M E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MLLEILKYPDPRLRVKCKPVDKFDEELKKIVNDMAETMYNAPGVGLAAPQVGIDKRLFII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+    +            I   +     +EGCLS+P   A+V R+  +     D N   
Sbjct: 61  DISKEKNDL---KVFINPTILKKEGEICDEEGCLSVPGEYANVTRAEVVEAVAQDINGNE 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            II ADGL+A  +QHELDHLNG LF+D L   KR+ + K + +  
Sbjct: 118 FIIKADGLMARAIQHELDHLNGTLFLDRLPAFKRESVKKHIKRRQ 162


>gi|161506040|ref|YP_001573152.1| peptide deformylase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|189083077|sp|A9MN80|DEF_SALAR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|160867387|gb|ABX24010.1| hypothetical protein SARI_04221 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +N  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSEN---RNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|311113462|ref|YP_003984684.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310944956|gb|ADP41250.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI+ +P+L R + P+   + +   L+ +M E M +  G+GLAA QIGV  R+  
Sbjct: 1   MAIRPVVIYGNPVLHRPAAPVTAFDDEFKALVTDMYETMDAAHGVGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++          +NP++          D    +EGCLS P Y   +KR+ ++TV   
Sbjct: 61  YQMENEDGVPARGCIVNPRLTLGKVSAAEPDPHDEEEGCLSFPGYGFPLKRAEWVTVNGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHL+G L+++ L++ K     KK+ K
Sbjct: 121 DVEGNPLRFEATGWFARCMQHETDHLDGKLYVNRLNK-KWTSRMKKVVK 168


>gi|16762876|ref|NP_458493.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144363|ref|NP_807705.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213161458|ref|ZP_03347168.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418738|ref|ZP_03351804.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213584235|ref|ZP_03366061.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213650879|ref|ZP_03380932.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289824191|ref|ZP_06543786.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|23396544|sp|Q8Z1W9|DEF_SALTI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|170734476|ref|YP_001766423.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
 gi|254246863|ref|ZP_04940184.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|124871639|gb|EAY63355.1| N-formylmethionyl-tRNA deformylase [Burkholderia cenocepacia PC184]
 gi|169817718|gb|ACA92301.1| peptide deformylase [Burkholderia cenocepacia MC0-3]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD   +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDAKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|15892201|ref|NP_359915.1| peptide deformylase [Rickettsia conorii str. Malish 7]
 gi|20137640|sp|Q92IZ1|DEF1_RICCN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|15619334|gb|AAL02816.1| polypeptide deformylase [Rickettsia conorii str. Malish 7]
          Length = 175

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + + + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSRELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|15603424|ref|NP_246498.1| peptide deformylase [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|13431442|sp|P57948|DEF_PASMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++++PD  L+ +++P+ ++N +I  ++DNM E MY  +GIGLAA Q+ +  R++ 
Sbjct: 1   MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D    K     +    I  S   +  +EGCLS+P +R  V R   +T++ +D + +
Sbjct: 61  I---DVEGTKENQYVLINPEIIDSCGETGIEEGCLSLPGFRGFVPRKEKVTIKALDRHGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHLNGI+F D+LS LKR  + +K+ KL + 
Sbjct: 118 EYTLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQ 165


>gi|167585076|ref|ZP_02377464.1| peptide deformylase [Burkholderia ubonensis Bu]
          Length = 167

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNIIHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +         FINP+++  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDISEDKSELR--AFINPELVWSSDAKQVYEEGCLSVPGVYDEVERPDRVRVRALDEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQSRIKSKMKKLER 165


>gi|58697042|ref|ZP_00372504.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698050|ref|ZP_00372974.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225629944|ref|YP_002726735.1| polypeptide deformylase [Wolbachia sp. wRi]
 gi|254767611|sp|C0R5A2|DEF_WOLWR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58535407|gb|EAL59482.1| peptide deformylase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58536692|gb|EAL59978.1| peptide deformylase [Wolbachia endosymbiont of Drosophila simulans]
 gi|225591925|gb|ACN94944.1| polypeptide deformylase [Wolbachia sp. wRi]
          Length = 179

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM   K  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAITKAQKIKKQHE 178


>gi|242237892|ref|YP_002986073.1| peptide deformylase [Dickeya dadantii Ech703]
 gi|242129949|gb|ACS84251.1| peptide deformylase [Dickeya dadantii Ech703]
          Length = 170

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/170 (37%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAKPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSEERDQRL---VLINPELLEKSGDTGIEEGCLSIPETRALVPRAERVKIRALDKDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  DGLLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL +  +
Sbjct: 118 PFELETDGLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKLDRQNN 167


>gi|157148861|ref|YP_001456180.1| peptide deformylase [Citrobacter koseri ATCC BAA-895]
 gi|166198515|sp|A8AQI1|DEF_CITK8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157086066|gb|ABV15744.1| hypothetical protein CKO_04699 [Citrobacter koseri ATCC BAA-895]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
 gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
          Length = 169

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRKVAAPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + +R +D N  
Sbjct: 61  IDVSETRDQRL---VLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDYNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L+
Sbjct: 118 SFELAADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKLEKMAKLQ 166


>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
 gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
 gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
          Length = 175

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L   +  + + +  +  L  +M E MY   G+GLAA Q+    RL+V
Sbjct: 1   MALLPILKYPDPRLATKAAVVTEFDDKLKQLAADMAETMYKAPGVGLAATQVDRHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     V +NP+++  S++   ++EGCLS+P     V R A + V+  D    
Sbjct: 61  IDITEEKNDLK--VLVNPELVESSEETKPWEEGCLSLPGIYDKVTRPAKVKVKAQDLEGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  DGLLA C+QHE+DHL G +F+DHLS LK+  I  K+ K+ 
Sbjct: 119 FFELECDGLLAVCVQHEMDHLEGTVFVDHLSMLKKQRIRHKIRKMR 164


>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
 gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
          Length = 184

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 13/183 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I PD  LR+ + P+ +  + +  + DNM   MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MPLLDILIHPDRRLRKTAEPVSQFTNALKTITDNMFATMYEAHGIGLAATQVNIHQRIVV 60

Query: 61  ID-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           +D             D       +V INP+II  S++ + +QEGCLS+P   ADV+R A 
Sbjct: 61  MDVPERREDDETETPDAPIPHTKLVLINPEIIATSEETASWQEGCLSLPGQFADVERPAK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK--LVQ 167
           I   Y D         A+GLL  C+QHE+DHLNG+LFIDHLSRLKR+ + KK++K  L +
Sbjct: 121 IRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLNGVLFIDHLSRLKRERLEKKLAKSLLQK 180

Query: 168 LRD 170
            R+
Sbjct: 181 ERE 183


>gi|270264340|ref|ZP_06192606.1| peptide deformylase [Serratia odorifera 4Rx13]
 gi|270041476|gb|EFA14574.1| peptide deformylase [Serratia odorifera 4Rx13]
          Length = 169

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V+ P++++N+ I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHYPDERLRKVAAPVKEVNATIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+A + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAANVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ K+ +L
Sbjct: 118 PFELEADDLLAICIQHEMDHLMGKLFVDYLSPLKRQRIRQKLEKMAKL 165


>gi|167579358|ref|ZP_02372232.1| peptide deformylase [Burkholderia thailandensis TXDOH]
 gi|167617459|ref|ZP_02386090.1| peptide deformylase [Burkholderia thailandensis Bt4]
 gi|257140665|ref|ZP_05588927.1| peptide deformylase [Burkholderia thailandensis E264]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+  SD   VY+EGCLS+P    +V+R   + VR +D   +
Sbjct: 61  IDVSEDKNELR--VFINPEIVWTSDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 PFELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 165


>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
 gi|238688844|sp|B1LB14|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
 gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
          Length = 164

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|38639603|ref|NP_943372.1| peptide deformylase [Klebsiella pneumoniae]
 gi|168998831|ref|YP_001688099.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|262040714|ref|ZP_06013948.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|38016701|gb|AAR07722.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae]
 gi|238549851|dbj|BAH66202.1| N-formylmethionylaminoacyl-tRNA deformylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259041938|gb|EEW42975.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R ++   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALNRYGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|308177754|ref|YP_003917160.1| peptide deformylase [Arthrobacter arilaitensis Re117]
 gi|307745217|emb|CBT76189.1| peptide deformylase [Arthrobacter arilaitensis Re117]
          Length = 187

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR  ++ +     ++  L+++M + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAILGIRIIGDPVLRTPAQEVTDFGPELQKLVEDMDQTMENVTGAGLAAPQVGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +    D      EGCLSIP   A V+R   +     D    
Sbjct: 61  YQTGQERG-----HIVNPVLELSEDYQEDQVEGCLSIPGIAAPVRRRRHVKATGFDKFGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I  DGLLA C QHE DHL+GILF+D L   ++    + + 
Sbjct: 116 PVEIEGDGLLARCFQHETDHLDGILFLDRLEPEEKKAAWRTLR 158


>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 172

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 110/168 (65%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++I PDP L++V   +  I+  I +  D+MLE MY+  GIGLAA Q+GVL R++V+
Sbjct: 1   MKLKILIHPDPRLKKVCAAVPDISDKIRSFADDMLETMYTAPGIGLAAPQVGVLERMIVL 60

Query: 62  DLQDHA-HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +  P+V +NP++I  SD+ +VY EGCLSIPD  ADV R   + V ++D +  
Sbjct: 61  DCVKEDGAKPEPLVMVNPRVIAASDETNVYDEGCLSIPDQYADVTRPKEVRVEWLDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q    DGL ATC+QHE+DHL G LFID+L  LKR MIT+KM KL + 
Sbjct: 121 LQKRDMDGLWATCVQHEIDHLEGKLFIDYLKPLKRQMITRKMQKLKRE 168


>gi|315497920|ref|YP_004086724.1| peptide deformylase [Asticcacaulis excentricus CB 48]
 gi|315415932|gb|ADU12573.1| peptide deformylase [Asticcacaulis excentricus CB 48]
          Length = 178

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 110/167 (65%), Gaps = 9/167 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++  P P+L++VS+P+E  +  ++  L+D+MLE MY   GIGLAA+QIG   R++
Sbjct: 1   MAIRDIITVPHPLLKQVSKPVEGGVTDELRALMDDMLETMYDAPGIGLAAIQIGEPIRVI 60

Query: 60  VID--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           V+D         +D    K P  F+NP+II  S++ S Y EGCLS+P+   +VKR A + 
Sbjct: 61  VMDLQERPDDLPEDAPAPKQPRYFVNPEIIWASEELSTYDEGCLSVPEVYDEVKRPARVR 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           ++Y++   +  I   DGL ATC+QHE+DHLNG+LFIDHLS+LKRD  
Sbjct: 121 LKYLNYQGEEVIEECDGLYATCIQHEMDHLNGVLFIDHLSKLKRDRA 167


>gi|170724408|ref|YP_001758434.1| peptide deformylase [Shewanella woodyi ATCC 51908]
 gi|169809755|gb|ACA84339.1| peptide deformylase [Shewanella woodyi ATCC 51908]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+ + N+D+   IDNM E MY   GIGLAA Q+   ++L+V
Sbjct: 1   MSLLKVLRFPDEKLRTIAKPVTEFNADLQTQIDNMFETMYEEKGIGLAATQVDYHHQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A+V+R+  +T++ +D    
Sbjct: 61  MDLQDEVERPK---VFINLEIVASSGHFENEEGCLSVPGIFANVERAEHVTIKALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL   CLQHELDHL G LF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLEADGLFGICLQHELDHLKGKLFVDYLSPLKRQRIKQKLEKAARQ 165


>gi|78067947|ref|YP_370716.1| peptide deformylase [Burkholderia sp. 383]
 gi|77968692|gb|ABB10072.1| peptide deformylase [Burkholderia sp. 383]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+I+  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEEKNELR--AFINPEIVWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|288918232|ref|ZP_06412587.1| peptide deformylase [Frankia sp. EUN1f]
 gi|288350402|gb|EFC84624.1| peptide deformylase [Frankia sp. EUN1f]
          Length = 183

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ E M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLAETMNEAGGVGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP +  FS++    +EGCLS+P    D++R   +     + +  
Sbjct: 61  YLDDSDEVG----HLVNPVLGPFSEEMMDGEEGCLSLPGLSFDLRRPERVLAVGQNVHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   G+L+ CLQHE DHL+GILFID L +  +    K + +
Sbjct: 117 PVTIEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160


>gi|241664932|ref|YP_002983292.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|309780262|ref|ZP_07675013.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
 gi|240866959|gb|ACS64620.1| peptide deformylase [Ralstonia pickettii 12D]
 gi|308920965|gb|EFP66611.1| peptide deformylase [Ralstonia sp. 5_7_47FAA]
          Length = 171

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++   +
Sbjct: 61  IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|152994060|ref|YP_001338895.1| peptide deformylase [Marinomonas sp. MWYL1]
 gi|150834984|gb|ABR68960.1| peptide deformylase [Marinomonas sp. MWYL1]
          Length = 181

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR++++PI K   ++   ID+ML+ MY  +G+GLAA Q+   +RLVV
Sbjct: 11  MAVLTVLEYPDKRLRKIAKPITKFTDELQTKIDDMLDTMYDENGLGLAATQVDYHHRLVV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +   P+VFINP+     D+ + +QEGCLS+P +   + R+A + V+ +D N +
Sbjct: 71  MDFSEERNE--PIVFINPEFEVLDDEPNEFQEGCLSVPGFYEHIYRAAKVRVKALDRNGK 128

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              +  D L+A C+QHE+DHL+G L +D+L+ LKR+ I  K+ K  +L
Sbjct: 129 PFTLEVDELMAVCVQHEVDHLDGKLMVDYLTPLKRNRIKSKLEKAHKL 176


>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
 gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ FPDP+L +V+ P+   +  +  L+D+M   MY+ +GIGLAA QI +  R+ +I
Sbjct: 1   MLYEIIKFPDPVLEKVAEPVTLFDDSLKKLVDDMFASMYAAEGIGLAAPQINISRRITII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL      +  +V INP++I   +     +EGCLS+PD R  V R+A++ VR  D   +H
Sbjct: 61  DLSFQKRPEEKIVLINPEVIAV-EGKQHEEEGCLSLPDIREKVTRAAWVKVRAQDATGKH 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +    LLA   QHE+DHLNGILFI  +SRLKRD++++++ K+++  +
Sbjct: 120 FEVEGTELLARAFQHEIDHLNGILFISKISRLKRDLVSRRIRKMMKNGE 168


>gi|171319440|ref|ZP_02908545.1| peptide deformylase [Burkholderia ambifaria MEX-5]
 gi|171095332|gb|EDT40313.1| peptide deformylase [Burkholderia ambifaria MEX-5]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQVYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 AFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|167561029|ref|ZP_02353945.1| peptide deformylase [Burkholderia oklahomensis EO147]
 gi|167568291|ref|ZP_02361165.1| peptide deformylase [Burkholderia oklahomensis C6786]
          Length = 167

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/167 (40%), Positives = 104/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRRLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDVSEDKNEL--RVFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 SFEIDCEGLLAVCVQHEMDHLMGRVFVQYLSSLKQSRIKTKMKKLER 165


>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56415326|ref|YP_152401.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62181912|ref|YP_218329.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616432|ref|YP_001590397.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167554203|ref|ZP_02347944.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167995181|ref|ZP_02576271.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168239761|ref|ZP_02664819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168245233|ref|ZP_02670165.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264713|ref|ZP_02686686.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168468037|ref|ZP_02701874.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168823236|ref|ZP_02835236.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444564|ref|YP_002042658.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194451296|ref|YP_002047431.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194734454|ref|YP_002116350.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197248664|ref|YP_002148327.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197265509|ref|ZP_03165583.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364256|ref|YP_002143893.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|198245506|ref|YP_002217370.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|200388386|ref|ZP_03214998.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354966|ref|YP_002228767.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858648|ref|YP_002245299.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913879|ref|ZP_04657716.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|23396546|sp|Q8ZLM7|DEF_SALTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|75505525|sp|Q57J64|DEF_SALCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|81677960|sp|Q5PIT8|DEF_SALPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083078|sp|A9N8B1|DEF_SALPB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690058|sp|B5F7R3|DEF_SALA4 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690317|sp|B5FJI2|DEF_SALDC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690438|sp|B5R1E3|DEF_SALEP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690545|sp|B5RH49|DEF_SALG2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690672|sp|B4TJX7|DEF_SALHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690738|sp|B5BGV3|DEF_SALPK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693518|sp|B4SUQ8|DEF_SALNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238693718|sp|B4TXB0|DEF_SALSV RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129583|gb|AAV79089.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129545|gb|AAX67248.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365796|gb|ABX69564.1| hypothetical protein SPAB_04247 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403227|gb|ACF63449.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409600|gb|ACF69819.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194709956|gb|ACF89177.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628902|gb|EDX48312.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095733|emb|CAR61303.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197212367|gb|ACH49764.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197243764|gb|EDY26384.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197287582|gb|EDY26974.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940022|gb|ACH77355.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605484|gb|EDZ04029.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274747|emb|CAR39803.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321541|gb|EDZ09380.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205327093|gb|EDZ13857.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205336019|gb|EDZ22783.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340500|gb|EDZ27264.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205346889|gb|EDZ33520.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710451|emb|CAR34809.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248563|emb|CBG26401.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995615|gb|ACY90500.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159949|emb|CBW19468.1| polypeptide deformylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914429|dbj|BAJ38403.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087852|emb|CBY97615.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226458|gb|EFX51508.1| Peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322615053|gb|EFY11977.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617340|gb|EFY14241.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625562|gb|EFY22387.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626404|gb|EFY23213.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632084|gb|EFY28837.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635037|gb|EFY31760.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643262|gb|EFY39829.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646654|gb|EFY43161.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650000|gb|EFY46419.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322652717|gb|EFY49057.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659526|gb|EFY55770.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665532|gb|EFY61719.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670426|gb|EFY66565.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670499|gb|EFY66633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675075|gb|EFY71158.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322681612|gb|EFY77641.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685956|gb|EFY81945.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322716398|gb|EFZ07969.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131764|gb|ADX19194.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323195826|gb|EFZ80999.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196418|gb|EFZ81569.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202703|gb|EFZ87742.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207308|gb|EFZ92258.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211256|gb|EFZ96101.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216035|gb|EGA00766.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323223474|gb|EGA07802.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226796|gb|EGA10986.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231842|gb|EGA15952.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233205|gb|EGA17300.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237272|gb|EGA21337.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245507|gb|EGA29506.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249013|gb|EGA32935.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250636|gb|EGA34517.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256865|gb|EGA40579.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263014|gb|EGA46561.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266014|gb|EGA49509.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272771|gb|EGA56174.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326625151|gb|EGE31496.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326630115|gb|EGE36458.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|307822764|ref|ZP_07652995.1| peptide deformylase [Methylobacter tundripaludum SV96]
 gi|307736368|gb|EFO07214.1| peptide deformylase [Methylobacter tundripaludum SV96]
          Length = 168

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+ +  ++ ++  I  L+D+MLE MY + G+GLAA Q+ V  R+VV
Sbjct: 1   MSILSILEFPDERLRKKAAIVKTVDDKIKKLVDDMLETMYESHGVGLAATQVNVHQRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +      P+  INP+II         +EGCLS+P +   V+R+  I V+ +D   +
Sbjct: 61  IDVSEEKDA--PLCLINPEIIEKDGVKES-EEGCLSVPGFFEKVERAEHIIVKALDREGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHELDHL+G LF+D++S LKR  I KK+ K+ ++
Sbjct: 118 PFELSARDLLAVCVQHELDHLDGKLFVDYISPLKRQRIKKKLEKIHKM 165


>gi|170697716|ref|ZP_02888803.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
 gi|170137331|gb|EDT05572.1| peptide deformylase [Burkholderia ambifaria IOP40-10]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 SFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|283852905|ref|ZP_06370166.1| peptide deformylase [Desulfovibrio sp. FW1012B]
 gi|283571734|gb|EFC19733.1| peptide deformylase [Desulfovibrio sp. FW1012B]
          Length = 175

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P L + + P+ +I  +I  L   M E MY+  GIGLAA Q+G   RLVVI
Sbjct: 1   MSLEILKYPHPTLAQKAAPVTEITPEIRELAAAMAETMYANQGIGLAAPQVGRSIRLVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  M  +NP +IT        +EGCLS+ DYR +V R+A +TV+  D +   
Sbjct: 61  DLSGPDKREGLMTLVNP-VITDPAGEEEDEEGCLSVRDYRTNVVRAATVTVKATDLDGNP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL+G+LFIDH+SRLKR M  K++ +  + 
Sbjct: 120 FCLEADGLLAVCLQHEIDHLDGVLFIDHISRLKRAMYDKRVKRWARQ 166


>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
 gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N  I  ++D+M + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVAEVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   + VR +D + +
Sbjct: 61  IDVEGDKQNQF---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQ 165


>gi|121606766|ref|YP_984095.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
 gi|120595735|gb|ABM39174.1| peptide deformylase [Polaromonas naphthalenivorans CJ2]
          Length = 173

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+   ++ +  L D M   MY+ +GIGLAA Q+ V  RLVV
Sbjct: 1   MTPLTILRYPDPRLHTVAKPVAAFDARLRQLADAMFHTMYAAEGIGLAATQVDVHERLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  +  EGCLS+P     V+R+  + V  +D N Q
Sbjct: 61  IDVSE--GRNQPLVLINPEIVWASAETRIGDEGCLSVPGIYDGVERALAVKVAALDLNGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  K+ K  +  +
Sbjct: 119 KQLHEAEGMLAVCIQHEMDHLIGKVFVEYLSPLKRNRIKTKLIKQKKDEE 168


>gi|115353233|ref|YP_775072.1| peptide deformylase [Burkholderia ambifaria AMMD]
 gi|115283221|gb|ABI88738.1| peptide deformylase [Burkholderia ambifaria AMMD]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P++K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVDKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|116747597|ref|YP_844284.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
 gi|158512342|sp|A0LEJ7|DEF_SYNFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|116696661|gb|ABK15849.1| peptide deformylase [Syntrophobacter fumaroxidans MPOB]
          Length = 170

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDPILR+ +  +E I+  ++ LID+M E MY   GIGLAA Q+G    L+V
Sbjct: 1   MAILDICTYPDPILRQKAASVENIDEALIKLIDDMTETMYEAPGIGLAANQVGRSLSLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQ        +V INP+I+    +   ++EGCLS+P+Y + VKR A + VR    + +
Sbjct: 61  VDLQRQDEEHGLIVLINPQIVATQGE-ITWEEGCLSVPEYFSAVKRHAEVVVRGYGRDGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A GLLA  LQHE+DHL G LFID L+ + RD+ 
Sbjct: 120 EMEIQAGGLLAVALQHEIDHLEGRLFIDRLNPITRDIF 157


>gi|158313554|ref|YP_001506062.1| peptide deformylase [Frankia sp. EAN1pec]
 gi|238686856|sp|A8LE21|DEF_FRASN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158108959|gb|ABW11156.1| peptide deformylase [Frankia sp. EAN1pec]
          Length = 183

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR V+ P+   + ++  L+D++ + M    G+GLAA Q+GV  R+  
Sbjct: 1   MSVRDIRLLGDPVLRTVADPVATFDRELRRLVDDLADTMRDAGGVGLAAPQLGVSLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          + P      D     +EGCLS+P    D++R   +     + +  
Sbjct: 61  YLDDSDEVGHLINPVLGPFSEEMMDG----EEGCLSLPGLAFDLRRPERVLAVGQNSHGD 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G+L+ CLQHE DHL+GILFID L +  +    K + +
Sbjct: 117 PVTVEGSGILSRCLQHETDHLDGILFIDRLDKETKRAAMKAIRE 160


>gi|225677067|ref|ZP_03788072.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590889|gb|EEH12111.1| polypeptide deformylase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 179

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+    +EGCLSIP+   ++KR  ++TV
Sbjct: 61  VDVQLETIENEPAGYESIGKFCMINPEITELSDEQVTLKEGCLSIPEQSYEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYRDLNNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|206580091|ref|YP_002236311.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288933300|ref|YP_003437359.1| peptide deformylase [Klebsiella variicola At-22]
 gi|290512102|ref|ZP_06551470.1| peptide deformylase [Klebsiella sp. 1_1_55]
 gi|238058213|sp|B5XNC4|DEF_KLEP3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|206569149|gb|ACI10925.1| peptide deformylase [Klebsiella pneumoniae 342]
 gi|288888029|gb|ADC56347.1| peptide deformylase [Klebsiella variicola At-22]
 gi|289775892|gb|EFD83892.1| peptide deformylase [Klebsiella sp. 1_1_55]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---ERLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 177

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++RP+   +  +  L+ +M E MY   G+GLA+ Q+ V  +L++
Sbjct: 1   MPLLNILRYPDPRLHKIARPVTVFDDRLKQLVADMAETMYDAPGVGLASSQVDVHEQLII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D+       V INP+I   S +  +Y EGCLS+P     V+R A I VR +D + +
Sbjct: 61  VDISDNQSELR--VLINPEITWASTEMQLYDEGCLSVPGVYDGVERHARIKVRALDVDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                ADGLLA C+QHE+DHL G +F+++LS LKR+ I  KM K  + 
Sbjct: 119 EFDTTADGLLAVCIQHEMDHLKGKVFVEYLSPLKRNRIKAKMLKEERE 166


>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
 gi|6014949|sp|O66847|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 92/168 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +VI+P+ IL++ +  ++ I+ ++ NLI +M + MY  +G+GLAA QIGV   ++VI
Sbjct: 1   MVRDIVIYPNEILKKPTEKVDVIDKEVKNLIRDMFDTMYEAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D           + +    I   +    Y+EGCLS P    +V+R   + V  ++ + + 
Sbjct: 61  DTSPKEDAPPLKLVLINPEIKEGEGKIKYKEGCLSFPGLSVEVERFQKVKVNALNEHGEP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             +  +G  A   QHELDHL GI F+D L   +R M  +K  KL++ R
Sbjct: 121 VELTLEGFPAIVFQHELDHLKGITFVDRLKGWRRRMALEKYQKLLKSR 168


>gi|225698067|pdb|3FWX|A Chain A, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
 gi|225698068|pdb|3FWX|B Chain B, The Crystal Structure Of The Peptide Deformylase From
           Vibrio Cholerae O1 Biovar El Tor Str. N16961
          Length = 169

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/169 (43%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++ FPD  LR V++P+E++  +I  ++D+ LE  Y+ +GIGLAA Q+ +  R+VVI
Sbjct: 2   SVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDXLETXYAEEGIGLAATQVDIHQRIVVI 61

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ +   R  P V INP+II    +    +EGCLS+P  RA V R+A +TV+ +D N Q 
Sbjct: 62  DISE--TRDQPXVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQE 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               AD LLA C+QHELDHL G LF+D+LS LKR+ I +K+ K+ +  +
Sbjct: 119 YQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKRFNE 167


>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
 gi|3023626|sp|P96113|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
 gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
          Length = 164

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I V+Y +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|326793337|ref|YP_004311157.1| peptide deformylase [Marinomonas mediterranea MMB-1]
 gi|326544101|gb|ADZ89321.1| Peptide deformylase [Marinomonas mediterranea MMB-1]
          Length = 168

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 105/158 (66%), Gaps = 2/158 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP LR V++ +E++  +I   ID+ML+ MY   GIGLAA Q+ +  R+VV
Sbjct: 1   MAVLPVLEYPDPKLRTVAKEVEQVTPEIQAYIDDMLDTMYDESGIGLAATQVDIHLRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +  +   PMVFINP+ +   D+ + +QEGCLS+P Y   + R+A + V+ +D + +
Sbjct: 61  MDHSEERNE--PMVFINPEFVVLDDEPNEFQEGCLSVPGYYEHIYRAAKVKVKALDRDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              +  D L+A C+QHE+DHL+G LF+D++S LKR+ I
Sbjct: 119 PFEMEVDELMAVCVQHEIDHLDGKLFVDYISPLKRNRI 156


>gi|121610998|ref|YP_998805.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
 gi|121555638|gb|ABM59787.1| peptide deformylase [Verminephrobacter eiseniae EF01-2]
          Length = 170

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/169 (44%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKK-PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    P++ +PDP L R++RP+  ++  I  L D+ML  MY   GIGLAA Q+ V  RL+
Sbjct: 1   MAILLPILRYPDPRLHRIARPVLAVDERIRALADDMLATMYQAQGIGLAATQVDVHERLL 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+D+ D   +  P+V INP+II  S +   + EGCLS+P    DV+R   + VR +D   
Sbjct: 61  VVDVSDEHDQ--PLVLINPEIIWTSAEKQTHNEGCLSVPGIYDDVERFDAVHVRALDTRG 118

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q Q+I ADGLLA CLQHE+DHL G +F+ +LS LKR+ I  +M K  + 
Sbjct: 119 QPQVIEADGLLAMCLQHEMDHLQGKVFVQYLSPLKRNRIKTRMIKQQRE 167


>gi|238021725|ref|ZP_04602151.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
 gi|237866339|gb|EEP67381.1| hypothetical protein GCWU000324_01628 [Kingella oralis ATCC 51147]
          Length = 167

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++  P+  L  V++P+ +++  I  L+ +M E MY++ GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILTHPNERLHIVAQPVAQVDERIRTLVQDMAETMYASKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++      +   +IT  D  + Y+EGCLS+P    +V R+  ITV ++D    
Sbjct: 61  IDLSEEKNQLL---ALINPVITKKDGETTYEEGCLSVPGIYEEVTRAETITVEFLDIQGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHLNG LF+++LS LK++ I  KM K  + 
Sbjct: 118 KQTLDADGLLAICVQHELDHLNGKLFVEYLSPLKQNRIKTKMKKRQRE 165


>gi|34580779|ref|ZP_00142259.1| polypeptide deformylase [Rickettsia sibirica 246]
 gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia sibirica 246]
          Length = 176

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID+QDH          P+  +NP+II  +++     EGC+S+P+ R +V R   I +RY+
Sbjct: 62  IDIQDHDSVARPKDFYPLFIVNPEIIEKAEELVTANEGCISLPEQRIEVARPESIKIRYL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 122 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174


>gi|306840629|ref|ZP_07473381.1| peptide deformylase [Brucella sp. BO2]
 gi|306289367|gb|EFM60603.1| peptide deformylase [Brucella sp. BO2]
          Length = 164

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V +PDP LR  + P+   + D+  L D++L+ M +  GIG+ A  IG+  R+VV
Sbjct: 1   MTVRLIVKYPDPRLRAAAEPVTTFDEDLRKLADDLLDTMRAAPGIGITAPHIGISKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   +      P  +INP+I+   ++   +QEG +S+P    +V+R A I +RY D +  
Sbjct: 61  L---ELDRTTGPKTYINPEIVWACEEKIRHQEGSVSMPGVVDEVERHARIRLRYQDLDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            Q   +DGLLA C QHE+D L+GI ++  LSRLKR+ + K+  KL +
Sbjct: 118 EQTEESDGLLAVCHQHEIDQLDGIFWVQRLSRLKRERLIKRYEKLQR 164


>gi|254523595|ref|ZP_05135650.1| peptide deformylase [Stenotrophomonas sp. SKA14]
 gi|219721186|gb|EED39711.1| peptide deformylase [Stenotrophomonas sp. SKA14]
          Length = 170

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQLEAGEVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
          Length = 169

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPDDHLKVVCEPVVEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 118 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 165


>gi|37528512|ref|NP_931857.1| peptide deformylase [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|39930823|sp|Q7MYI2|DEF_PHOLL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|36787950|emb|CAE17067.1| polypeptide deformylase (PDF) (formylmethionine deformylase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR ++ P+E ++++I  +ID+M E MY+ +GIGLAA Q+ +  R+VV
Sbjct: 1   MSVLQVLHYPDERLRTIATPVETVDAEIRRIIDDMFETMYAEEGIGLAATQVDIHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N  + +    +      +  +EGCLSIP+ RA V R+  + ++ +D N +
Sbjct: 61  I---DVSETRNERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIKALDYNGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +K+ KL + +
Sbjct: 118 PFELQADDLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKVEKLDKQK 166


>gi|284040267|ref|YP_003390197.1| peptide deformylase [Spirosoma linguale DSM 74]
 gi|283819560|gb|ADB41398.1| peptide deformylase [Spirosoma linguale DSM 74]
          Length = 190

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 11/179 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+ ++ IE  + D+  L  NM E MY+  GIGLAA QIG   R+ V+
Sbjct: 1   MILPIIAYGDPVLRKRAKDIEPGSLDVKTLSQNMFETMYAASGIGLAAPQIGQSVRMFVV 60

Query: 62  D-----------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D             D +      VFINP+II  + D   ++EGCLSIP  R +V R   I
Sbjct: 61  DGEPLNEDEPEEDIDQSLVGFKKVFINPEIIEEAGDDWGFEEGCLSIPGIRGEVFRPEII 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +RY D +        DG+ A  +QHE DHL+G LF D+L  L+R +I KK+S + + +
Sbjct: 121 VIRYFDVDWNEHEEEYDGMAARIIQHEYDHLDGKLFTDYLPSLRRTLIKKKLSDISKGK 179


>gi|317486329|ref|ZP_07945159.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
 gi|316922399|gb|EFV43655.1| polypeptide deformylase [Bilophila wadsworthia 3_1_6]
          Length = 172

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +P+P+L + S PI ++  +I  L + M E MY +DGIG+AA Q+G L RLV+I
Sbjct: 1   MSLKIVTYPNPLLGKPSLPITEVTDEIRKLAEEMTEAMYKSDGIGIAAPQVGQLIRLVII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDD-FSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D+     R+  MV +NP      D  +   +EGCLS+PDYR+ V+R+A + V   D +  
Sbjct: 61  DVTGPEKREGKMVLVNPVWTPLPDAGYVESEEGCLSVPDYRSKVRRTARVHVEATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                AD +LA C+QHE+DHL+G LFID +SRLKR M   K+ K  + 
Sbjct: 121 PVSFDADDILAICVQHEIDHLDGKLFIDRISRLKRIMFENKLKKGTRQ 168


>gi|145594411|ref|YP_001158708.1| peptide deformylase [Salinispora tropica CNB-440]
 gi|145303748|gb|ABP54330.1| peptide deformylase [Salinispora tropica CNB-440]
          Length = 186

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++++ M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLIDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  +  +    
Sbjct: 61  FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSLPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I   GL+A C+QHE DHL+G+LFID L    R    K++ +
Sbjct: 116 PMQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKEIRR 159


>gi|146291135|ref|YP_001181559.1| peptide deformylase [Shewanella putrefaciens CN-32]
 gi|145562825|gb|ABP73760.1| peptide deformylase [Shewanella putrefaciens CN-32]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|297568346|ref|YP_003689690.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924261|gb|ADH85071.1| peptide deformylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 200

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 28/198 (14%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V FP P L+  ++P+ + N ++  L  +M+E M++  G+GLAA QIGV  R+VV
Sbjct: 1   MAIQPIVQFPVPSLKSRAKPVSEFNDELRRLALDMIETMHAAPGVGLAAPQIGVPLRVVV 60

Query: 61  I----------------------------DLQDHAHRKNPMVFINPKIITFSDDFSVYQE 92
           I                                      P + +    I  ++   V +E
Sbjct: 61  IAGRVTLDEEQRAALAQEHGEAGEAAPSPPSPPSEEELAPSLVLINPEIVEAEGQQVDEE 120

Query: 93  GCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
           GCLS+ +Y  +VKR A I V+  D + Q     A+   A  +QHELDHL+G LFID +S 
Sbjct: 121 GCLSVREYATNVKRFARIRVKAQDLSGQPLDFVAEDFFARVIQHELDHLDGTLFIDRISP 180

Query: 153 LKRDMITKKMSKLVQLRD 170
           LKR +  KK+ K++Q  +
Sbjct: 181 LKRTLYRKKLKKIMQAEE 198


>gi|311894799|dbj|BAJ27207.1| putative polypeptide deformylase [Kitasatospora setae KM-6054]
          Length = 181

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ IF DP+LR  ++P+   + ++  L+ ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MAVQPIRIFGDPVLRATAKPVTVFDKELRKLVKDLTDTMLEAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++            +    ++ +++     EGCLS+P  R D +R+  +  + ++ + +
Sbjct: 61  YNVDGVVGH------LINPDLSLTEEEQDGPEGCLSLPGLRFDTRRAYGVVAKGVNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    LLA C+QHE DHL+GI+FID L R  R    K + +
Sbjct: 115 PVEVEGTQLLARCIQHETDHLDGIIFIDRLDRETRKAAMKAIRE 158


>gi|51244598|ref|YP_064482.1| peptide deformylase [Desulfotalea psychrophila LSv54]
 gi|81692939|sp|Q6AQ98|DEF_DESPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|50875635|emb|CAG35475.1| probable peptide deformylase [Desulfotalea psychrophila LSv54]
          Length = 169

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/164 (39%), Positives = 92/164 (56%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +PDP+LR+ +  I   +  ++ L ++M E MY   GIGLAA QIG   +LVV
Sbjct: 1   MAILKICTYPDPVLRKETVAITVFDEKLVKLTEDMAETMYDAPGIGLAAPQIGESLKLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        K   + +    I   ++  V +EGCLS+P+  A VKR   I V Y D N +
Sbjct: 61  VSTARREDSKQEYMVMANPEIVEKEESQVDEEGCLSVPELLAMVKRYRKIKVNYQDINGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +   A  LQHE+DHLNGILF+DHLS LKR++  KK+ K
Sbjct: 121 PCSMTVEDRFAVVLQHEIDHLNGILFLDHLSSLKRNLYKKKVKK 164


>gi|120596857|ref|YP_961431.1| peptide deformylase [Shewanella sp. W3-18-1]
 gi|120556950|gb|ABM22877.1| peptide deformylase [Shewanella sp. W3-18-1]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEIERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|171909540|ref|ZP_02925010.1| peptide deformylase [Verrucomicrobium spinosum DSM 4136]
          Length = 192

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 14/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI+ DP+LR   +PI ++  +I  L  +M+E M++  G+GLAA Q+G+  +L VI
Sbjct: 1   MILPIVIYGDPVLRVKCKPITEVTEEIRKLSQDMIETMHNARGVGLAAPQVGIALQLAVI 60

Query: 62  DLQDHAHRKNPMVFIN--------------PKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           ++         +                     +    + ++ +EGCLSIPD R++V+RS
Sbjct: 61  EVPPDDESVTYVRLNGEDTPLAEAMPLIFLNPKLDHGKEKAMGEEGCLSIPDLRSEVRRS 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           A + V Y   + + + I ADGLLA  LQHE+DHLNGILFID LS   +  + +K+ +L+
Sbjct: 121 AGVKVEYQTLDGETRTIEADGLLARALQHEIDHLNGILFIDRLSAAAKLGVRRKLKRLM 179


>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
 gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
          Length = 167

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+RP++ ++  +  LID+M E MY+  GIGLAA QI    RLVV
Sbjct: 1   MALLNILHYPDERLHTVARPVDVVDDALRRLIDDMAETMYAAHGIGLAATQIDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +          +   +IT     +VY+EGCLS+P     V R+  +TV  +D N Q
Sbjct: 61  IDLSEEHDGLL---VLINPVITRKAGETVYEEGCLSVPGIYDKVTRAETVTVEALDRNGQ 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL+G +F++HLS++K+  I +K+ K  + 
Sbjct: 118 PFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMKQSRIKQKLKKRERQ 165


>gi|190576007|ref|YP_001973852.1| peptide deformylase [Stenotrophomonas maltophilia K279a]
 gi|229487565|sp|B2FIR4|DEF_STRMK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190013929|emb|CAQ47569.1| putative peptide deformylase [Stenotrophomonas maltophilia K279a]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/170 (45%), Positives = 103/170 (60%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE---KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M   P++ FPDP LR  +  IE           LIDNM   MY   GIGLAA Q+ V  R
Sbjct: 1   MALLPILEFPDPRLRTKAALIEAAEVTTPAFQELIDNMFLTMYDAPGIGLAATQVDVHKR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            +VID+ +  +   P VFINP+I+         +  CLS+P   ADV R+  ITV+Y+D 
Sbjct: 61  FMVIDVSEEKNE--PHVFINPEIVAKDGGRVYQEG-CLSVPGIFADVTRADTITVKYLDR 117

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           N Q Q + A  +LATC+QHE+DHL+G LFID+LS LKR+M+ KK++K  +
Sbjct: 118 NGQEQQMEAGDVLATCIQHEMDHLDGKLFIDYLSPLKREMVRKKLAKQRK 167


>gi|172062105|ref|YP_001809757.1| peptide deformylase [Burkholderia ambifaria MC40-6]
 gi|171994622|gb|ACB65541.1| peptide deformylase [Burkholderia ambifaria MC40-6]
          Length = 167

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MALLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +  +      FINP+II  SD+  +Y+EGCLS+P    +V+R   + VR ++   +
Sbjct: 61  IDISEEKNELR--AFINPEIIWSSDEKQIYEEGCLSVPGIYDEVERPDHVRVRALNEQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL +
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKTKMKKLER 165


>gi|17544789|ref|NP_518191.1| peptide deformylase [Ralstonia solanacearum GMI1000]
 gi|23396562|sp|Q8Y3B0|DEF1_RALSO RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|17427078|emb|CAD13598.1| probable peptide deformylase 1 (pdf 1) (polypeptide deformylase1)
           protein [Ralstonia solanacearum GMI1000]
          Length = 169

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S+   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|322831106|ref|YP_004211133.1| peptide deformylase [Rahnella sp. Y9602]
 gi|321166307|gb|ADW72006.1| peptide deformylase [Rahnella sp. Y9602]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQILHFPDERLRITAKPVKEVNAEIQQIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIPD RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPDQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM K+ +L
Sbjct: 118 TFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKMAKL 165


>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 170

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 PFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|218778408|ref|YP_002429726.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
 gi|254767578|sp|B8FHH0|DEF_DESAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|218759792|gb|ACL02258.1| peptide deformylase [Desulfatibacillum alkenivorans AK-01]
          Length = 172

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P PIL +  + IE I+ D++ L+++M E +Y   G+GLAAVQ+GV   ++V
Sbjct: 1   MALLDIVTYPAPILGKPCKLIEDIDEDLVCLVEDMTETLYDAPGLGLAAVQVGVDKAMLV 60

Query: 61  IDLQDHAHRKN--PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
            D+ +  + ++    V INPKI+      +   EGCLS+P++RADV R A +TV  +D  
Sbjct: 61  YDVAEDENSESTGLKVLINPKIVHTEGKVTSENEGCLSVPEFRADVPRFACVTVEGVDHE 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +   I A+GLLA  LQHE+DHL G LFID +S LKR M  ++++K ++
Sbjct: 121 GKPVKIDAEGLLAIVLQHEIDHLEGKLFIDRISSLKRSMYKRRVAKALK 169


>gi|309785609|ref|ZP_07680240.1| peptide deformylase [Shigella dysenteriae 1617]
 gi|308926729|gb|EFP72205.1| peptide deformylase [Shigella dysenteriae 1617]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEGGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
 gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
          Length = 168

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  V++P+  ++  +  L+  M E MY+++G+GLAA Q+ V  R++V
Sbjct: 1   MEQLTILQYPDPRLYIVAKPVAAVDERVRALVAAMFETMYASNGVGLAATQVDVHERIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  P+  INP+I+  S +   ++EGCLS+P     V R A + VR +D   Q
Sbjct: 61  MDTSE--QRNQPLALINPEIVRHSAEDKEWEEGCLSVPGIYDKVTRPATVRVRALDAQGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGL A C+QHE+DHL G +F+D+LS LKR+ I  KM K  + 
Sbjct: 119 PFEMDADGLTAVCIQHEMDHLMGKVFVDYLSPLKRNRIKTKMLKRQRQ 166


>gi|168234463|ref|ZP_02659521.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194472649|ref|ZP_03078633.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194459013|gb|EDX47852.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331619|gb|EDZ18383.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 107/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEANGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|259645184|sp|C6DFR5|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 TFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|237728621|ref|ZP_04559102.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|283835704|ref|ZP_06355445.1| hypothetical protein CIT292_10096 [Citrobacter youngae ATCC 29220]
 gi|226909243|gb|EEH95161.1| peptide deformylase [Citrobacter sp. 30_2]
 gi|291068383|gb|EFE06492.1| peptide deformylase [Citrobacter youngae ATCC 29220]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---EQLVLINPELLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 172

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +V +PDP L+ V  P+ ++  +I  L  +MLE MY   G+GLAA Q+G   R++V+
Sbjct: 1   MILDIVTYPDPRLKEVCEPVAEVTDEIRQLAADMLETMYEAPGVGLAAPQVGRNIRMLVM 60

Query: 62  DLQDHAHRKNPMVFINPK-IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D       +NP V INP   ++  +  S  +       +YRADVKR + + +   D +  
Sbjct: 61  DPSAQKDERNPRVLINPVLTLSGEEIISEQEGCLSVPMNYRADVKRMSRVHLSATDLDGN 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                 +   A  +QHE DHL+GILFID +SRL+R +   K+ K ++ +
Sbjct: 121 AIEEDLEDFDAIVMQHEYDHLDGILFIDKVSRLRRSLYDSKVKKWLKRK 169


>gi|188492250|ref|ZP_02999520.1| peptide deformylase [Escherichia coli 53638]
 gi|291284645|ref|YP_003501463.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|188487449|gb|EDU62552.1| peptide deformylase [Escherichia coli 53638]
 gi|209757364|gb|ACI76994.1| peptide deformylase [Escherichia coli]
 gi|290764518|gb|ADD58479.1| Peptide deformylase [Escherichia coli O55:H7 str. CB9615]
 gi|320661377|gb|EFX28792.1| peptide deformylase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 110/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+D
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKD 167


>gi|292489813|ref|YP_003532703.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|292900855|ref|YP_003540224.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291200703|emb|CBJ47836.1| polypeptide deformylase [Erwinia amylovora ATCC 49946]
 gi|291555250|emb|CBA23521.1| peptide deformylase [Erwinia amylovora CFBP1430]
 gi|312173996|emb|CBX82249.1| peptide deformylase [Erwinia amylovora ATCC BAA-2158]
          Length = 169

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  I---DVSESRDERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHELDHLVGKLFIDYLSPMKRQRIRQKLEKLHRQ 165


>gi|326329763|ref|ZP_08196084.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
 gi|325952528|gb|EGD44547.1| peptide deformylase [Nocardioidaceae bacterium Broad-1]
          Length = 181

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAVQPIRLFGDPVLRKPAIEVVDFDKELHKLVADLTDTMLEAPGAGLAAPQIGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                 +T S++     EGCLS+PD   D +R+  +  +  D + +
Sbjct: 61  WYVDGQVGHLV------NPDLTLSEETQDGGEGCLSLPDITFDCRRALSVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  +QHE DHL+GILFID L    R    K++ +
Sbjct: 115 PVTIEGSELLARAIQHETDHLDGILFIDRLDEAARKAAMKEIRE 158


>gi|34558486|ref|NP_908301.1| peptide deformylase [Wolinella succinogenes DSM 1740]
 gi|39930815|sp|Q7M7M2|DEF_WOLSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34481780|emb|CAE11201.1| POLYPEPTIDE DEFORMYLASE PDF FORMYLMETHIONINEDEFORMYLASE [Wolinella
           succinogenes]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 2/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P++ +P P+L++ S P+   + ++   +D M   M + +G+GLAAVQ+G   R ++++
Sbjct: 1   MLPIITYPHPLLKKRSEPVTLFDEELRQFLDEMYITMLAKNGVGLAAVQVGNPIRALIVN 60

Query: 63  LQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           + D    +     +      F   +    + EGCLS+P++  DV R   + + Y D   +
Sbjct: 61  IPDEEGNQERENLLEIINPEFLSKEGEIQFNEGCLSVPEFYEDVTRFDRVRLTYQDRYGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A+G LA  LQHE+DHLNGILFID LS +KR    K++ K  +
Sbjct: 121 RHEIEAEGYLAVALQHEIDHLNGILFIDKLSLIKRKKFEKELKKRQR 167


>gi|325963678|ref|YP_004241584.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469765|gb|ADX73450.1| peptide deformylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 190

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDGAPPAGVLVNPVLTLSKISGAVPDPDEEEEGCLSFPSGQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D   Q     A G  A  +QHE DHL+G L+++ L         K+  K
Sbjct: 121 DGYGQPVRFEATGWFARVMQHEYDHLDGKLYVNRLMDRYARKAMKQAKK 169


>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
 gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
          Length = 170

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+  +PDP+L      I++++ ++  L  +M++ MY   G+GLAA Q+G   R+VV
Sbjct: 1   MAILPICKYPDPVLAEKCAEIDRVDDELRRLAQDMIDTMYDAPGVGLAAPQVGRAIRMVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R  PMV INP+++         +  CLS+PDYRADV R++ + V   D    
Sbjct: 61  VDTAEDDKRGTPMVLINPRVVAKRGQLVWDEA-CLSVPDYRADVVRASEVVVEAGDLEGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+GL A CLQHE+DHL+G+LF+DH+S LKR M 
Sbjct: 120 DLRIEAEGLTAVCLQHEIDHLDGVLFLDHISSLKRAMY 157


>gi|283788078|ref|YP_003367943.1| polypeptide deformylase [Citrobacter rodentium ICC168]
 gi|282951532|emb|CBG91231.1| polypeptide deformylase [Citrobacter rodentium ICC168]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D   +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKEGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 165


>gi|311277759|ref|YP_003939990.1| peptide deformylase [Enterobacter cloacae SCF1]
 gi|308746954|gb|ADO46706.1| peptide deformylase [Enterobacter cloacae SCF1]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVQEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +   D  +  +EGCLS+P+ RA V R+  + VR +D + +
Sbjct: 61  IDVSEDREQQL---VLINPELIEKDGETGIEEGCLSVPEQRALVPRAETVKVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +++
Sbjct: 118 PFELNADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMK 166


>gi|152972195|ref|YP_001337341.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896783|ref|YP_002921528.1| peptide deformylase [Klebsiella pneumoniae NTUH-K2044]
 gi|330002243|ref|ZP_08304254.1| peptide deformylase [Klebsiella sp. MS 92-3]
 gi|166198519|sp|A6TEU0|DEF_KLEP7 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|150957044|gb|ABR79074.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238549110|dbj|BAH65461.1| peptide deformylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328537382|gb|EGF63631.1| peptide deformylase [Klebsiella sp. MS 92-3]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|299068355|emb|CBJ39579.1| peptide deformylase [Ralstonia solanacearum CMR15]
          Length = 169

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD   V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDISESRDELR--VFINPEIVWASDARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  DGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|157825411|ref|YP_001493131.1| peptide deformylase [Rickettsia akari str. Hartford]
 gi|166198521|sp|A8GMJ8|DEF_RICAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157799369|gb|ABV74623.1| peptide deformylase [Rickettsia akari str. Hartford]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMLKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP++I  S++     EGC+S+P  R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDFYPLFIVNPEMIEKSEELIKSNEGCISVPGQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|59713150|ref|YP_205926.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197334102|ref|YP_002157326.1| peptide deformylase [Vibrio fischeri MJ11]
 gi|75506885|sp|Q5E1Q8|DEF_VIBF1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238690282|sp|B5FCW6|DEF_VIBFM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59481251|gb|AAW87038.1| peptide deformylase [Vibrio fischeri ES114]
 gi|197315592|gb|ACH65039.1| peptide deformylase [Vibrio fischeri MJ11]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P+E +  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MALLEVLTFPDDRLRTVAKPVEAVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +IT        +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGLVPRSAEVSVSALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL+G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLDGKLFVDYLSPLKRKR 154


>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+PD  L+ V  P+ ++N DI  ++D+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 7   MTALNVLIYPDDHLKIVCEPVAEVNDDIRKIVDDMFDTMYQEEGIGLAAPQVDILQRIIT 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 67  IDIEGDKQNQL---VLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K  + 
Sbjct: 124 EFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLVKYKKQ 171


>gi|271964329|ref|YP_003338525.1| peptide deformylase [Streptosporangium roseum DSM 43021]
 gi|270507504|gb|ACZ85782.1| Peptide deformylase [Streptosporangium roseum DSM 43021]
          Length = 182

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+LR  + P++  + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQSIRLFGDPVLRTPAEPVKDFDKELRKLVKDLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             + +          INP +    +     +EGCLS P       R+     + ++ + +
Sbjct: 61  YYVDE-----QLGHLINPNLDLSEEKDEEGEEGCLSFPGLSFPTPRAIRAVAKGLNMHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +    L+A C QHE DHL+G+LFID +   +R +  K++ +
Sbjct: 116 PVTLEGTDLMARCFQHETDHLDGVLFIDRMDLKQRKLAMKEIRE 159


>gi|256830603|ref|YP_003159331.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
 gi|256579779|gb|ACU90915.1| peptide deformylase [Desulfomicrobium baculatum DSM 4028]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 106/169 (62%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P+P+L + + P+ +I  +I  L   MLE+MY+  GIGLAA Q+    RL+ +
Sbjct: 1   MPRTIVTYPNPVLAKKAAPVVEITEEIRALAAEMLEIMYADKGIGLAAPQVAESIRLITV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R++P VF+NP +     +    +EGCLS+  YR  VKR+  + +   D + + 
Sbjct: 61  DLSGPDKREDPHVFVNPVLSNLEGEVES-EEGCLSVVGYRTTVKRAERLHLSATDLDGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + AD L+A CLQHE+DHL+G+LFID +S+LKR +  +K+ K ++ ++
Sbjct: 120 VEMDADDLMAICLQHEVDHLDGVLFIDKISKLKRTLYERKLKKWLKEKN 168


>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
 gi|166198525|sp|A5ILS1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
          Length = 164

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   IRVFGDPVLRKRAKPVTKFDDNLEKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EGCLS P+   +++RS  I VRY +   ++    
Sbjct: 61  --VGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVRYQNTKGEYVEEV 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 119 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 160


>gi|67458716|ref|YP_246340.1| peptide deformylase [Rickettsia felis URRWXCal2]
 gi|67004249|gb|AAY61175.1| Polypeptide deformylase [Rickettsia felis URRWXCal2]
          Length = 175

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTAPDDRLKQKSQPVLEFTDQTRKFMDDMVKTMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDPIERPKDFYPLFIVNPEIIEKSEELITANEGCISVPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
          Length = 170

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++PI + ++++   IDNM E MY   GIGLAA Q+    +L+V
Sbjct: 1   MALLNVLRFPDERLRIQAKPITEFDAELQTQIDNMFETMYQEKGIGLAATQVDYHKQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+TV+ +D N  
Sbjct: 61  MDLQDEVERPK---VFINPEIISSSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRNGC 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ A+ L A C+QHE+DHL G LF+D+LS LKR  I +K+ K  +L
Sbjct: 118 EFIVEANELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARL 165


>gi|187930742|ref|YP_001901229.1| peptide deformylase [Ralstonia pickettii 12J]
 gi|187727632|gb|ACD28797.1| peptide deformylase [Ralstonia pickettii 12J]
          Length = 171

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYEAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  SD+  V+ EGCLS+PD    V R A + VR ++    
Sbjct: 61  IDVSESRDELR--VFINPEILWASDEHKVWDEGCLSVPDIYDKVDRPARVRVRALNEKGD 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + AD LLA C+QHE+DHL G +F+++LS LK+  I  K+ K  +
Sbjct: 119 TFELEADDLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIRSKLKKHQR 165


>gi|294085060|ref|YP_003551820.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664635|gb|ADE39736.1| peptide deformylase protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 177

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 1/166 (0%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++  PDP+LR  +  + ++   I NL+D+M   MY   GIGLAA QI +    +++ 
Sbjct: 8   ILDIIKLPDPVLREKAVAVPEVTDGIRNLLDDMAVTMYDAPGIGLAAPQINIS-ERLIVM 66

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
                        INP+II  S+D S+ +EGCLSIPD  A+V R A +TVRY D +   Q
Sbjct: 67  DCGKDETPELYKMINPEIIETSEDKSILEEGCLSIPDQTAEVTRPATVTVRYTDIDGDTQ 126

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           ++ A+GLLA C+QHE+DHLNG+LFIDH+SRLKRDMI +++ K ++ 
Sbjct: 127 MLTAEGLLAACVQHEIDHLNGVLFIDHISRLKRDMIIRRVMKEMRQ 172


>gi|296104994|ref|YP_003615140.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059453|gb|ADF64191.1| peptide deformylase [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++   +     +    +      +  +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSENRDGRL---VLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|259909966|ref|YP_002650322.1| peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|224965588|emb|CAX57120.1| Peptide deformylase [Erwinia pyrifoliae Ep1/96]
 gi|283480066|emb|CAY75982.1| peptide deformylase [Erwinia pyrifoliae DSM 12163]
 gi|310765564|gb|ADP10514.1| peptide deformylase [Erwinia sp. Ejp617]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SVELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|186474806|ref|YP_001856276.1| peptide deformylase [Burkholderia phymatum STM815]
 gi|184191265|gb|ACC69230.1| peptide deformylase [Burkholderia phymatum STM815]
          Length = 167

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+EK++  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEKVDDRIRKLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D         FINP+I+  SD+  +++EGCLS+P    +V+R+  + VR M+   +
Sbjct: 61  IDVSDTHEELR--AFINPEILWSSDERKIHEEGCLSVPGIYDNVERAEKVRVRAMNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGKVFVEYLSPLKQTRIKSKMKKLA 164


>gi|218710998|ref|YP_002418619.1| peptide deformylase [Vibrio splendidus LGP32]
 gi|218324017|emb|CAV20379.1| Peptide deformylase [Vibrio splendidus LGP32]
          Length = 206

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P++++  +I   +D+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 37  MSVLQVLTLPDNRLRTVAKPVKEVTPEIQKFVDDMIETMYDEEGIGLAATQVDFHQRIVV 96

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +    IT        +EGCLS+P  RA V R+A +TV+ +D    
Sbjct: 97  I---DISETRDEPMVLINPEITDKRGEDGIEEGCLSVPGARALVPRAAEVTVKALDREGN 153

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                AD LLA C+QHELDHL G LF+D+LS LKR  I  K++K+ +  +
Sbjct: 154 EFTFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKRIQDKLAKIKRFNE 203


>gi|300718672|ref|YP_003743475.1| Peptide deformylase [Erwinia billingiae Eb661]
 gi|299064508|emb|CAX61628.1| Peptide deformylase [Erwinia billingiae Eb661]
          Length = 174

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N+DI  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNADIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D    
Sbjct: 61  IDVSENRE---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDREGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SYELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|188535243|ref|YP_001909040.1| peptide deformylase [Erwinia tasmaniensis Et1/99]
 gi|238692005|sp|B2VK93|DEF_ERWT9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188030285|emb|CAO98174.1| Peptide deformylase [Erwinia tasmaniensis Et1/99]
          Length = 169

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRIVAKPVKEVNANIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSEDRD---ERLVLIDPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL + 
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKLEKLYRQ 165


>gi|238898789|ref|YP_002924471.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259645182|sp|C4K6Y0|DEF_HAMD5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229466549|gb|ACQ68323.1| peptide deformylase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 171

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/170 (40%), Positives = 109/170 (64%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR+++ P++K++  I  + D+MLE MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSILQILHFPDDRLRKIASPVKKMDDQIRQIADDMLETMYQAEGIGLAATQVNIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P++ INP+++      +  +EGCLSIP  +A + R+  IT++ ++   +
Sbjct: 61  IDVSED--RHQPLILINPELLEK-SGETGIEEGCLSIPGEKAFIPRAKEITIQALNREGR 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHL G LF+D+LS  KR  I KKM KL ++ +
Sbjct: 118 SFRLSADDLLAICIQHEMDHLIGKLFVDYLSPFKRQRIQKKMEKLQKINE 167


>gi|270157753|ref|ZP_06186410.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|289163978|ref|YP_003454116.1| polypeptide deformylase [Legionella longbeachae NSW150]
 gi|269989778|gb|EEZ96032.1| peptide deformylase [Legionella longbeachae D-4968]
 gi|288857151|emb|CBJ10967.1| putative polypeptide deformylase [Legionella longbeachae NSW150]
          Length = 170

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V++P+   +  +  LI++M E MY+  G+GLAA QIG+  RL V
Sbjct: 1   MAIHTILYLPDARLREVAKPVVHFDDKLQTLIEDMFETMYAAHGVGLAAPQIGIGLRLSV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+      +     I    I  S+    ++EGCLS+P     V R+  + V+ +D   +
Sbjct: 61  IDIAGDKKNQL---VIINPEIIASEGEKKFEEGCLSVPGAYDTVIRAEKVIVKALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADGLLA CLQHE+DH+NG LFID LS LK+ M  KK+ K  + 
Sbjct: 118 PFEIQADGLLAECLQHEIDHMNGKLFIDLLSPLKKAMARKKLEKFKRQ 165


>gi|239944168|ref|ZP_04696105.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           15998]
 gi|239990624|ref|ZP_04711288.1| putative polypeptide deformylase [Streptomyces roseosporus NRRL
           11379]
 gi|291447640|ref|ZP_06587030.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
 gi|291350587|gb|EFE77491.1| polypeptide deformylase [Streptomyces roseosporus NRRL 15998]
          Length = 212

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTAFDDELAQLIDDMFASQKTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGKRHTGVVCNPVLEELAPEMRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAK 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPIRVKGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|84514541|ref|ZP_01001905.1| peptide deformylase [Loktanella vestfoldensis SKA53]
 gi|84511592|gb|EAQ08045.1| peptide deformylase [Loktanella vestfoldensis SKA53]
          Length = 173

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 83/169 (49%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P++I PDP L++V+ P+  I+ D+  L D+MLE MY   GIGLAA Q+ V+ R++V
Sbjct: 1   MTIRPILIHPDPRLKKVTAPVASIDDDLRRLADDMLETMYEAPGIGLAAPQVAVMRRVIV 60

Query: 61  IDLQDH-AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +D Q        PMV INP+II  S+  SVY EGCLSIP+  A+V R A + V ++  + 
Sbjct: 61  MDCQKDAEATPEPMVLINPEIIWSSEATSVYDEGCLSIPEQYAEVTRPAEVEVAWLGLDG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + Q    DGL ATC+QHE+DHL+G LFID L  LKR MIT+KM KL + 
Sbjct: 121 KPQRARFDGLWATCVQHEIDHLDGKLFIDCLGPLKRQMITRKMQKLKRE 169


>gi|148262893|ref|YP_001229599.1| peptide deformylase [Geobacter uraniireducens Rf4]
 gi|146396393|gb|ABQ25026.1| peptide deformylase [Geobacter uraniireducens Rf4]
          Length = 171

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FPDP L++ S+P+  IN+ ++ L+ +M E MY   G+GLAA QIGV  R+VVI
Sbjct: 1   MIRKILTFPDPELKKKSQPVVVINNKVIELVRDMAETMYDAPGVGLAAPQIGVHQRIVVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP II  +D  S  +EGCLSIP Y A+V+R   + V+ ++ + + 
Sbjct: 61  DVAGKDDPPQLIVAINPVII-HADGESYEEEGCLSIPKYAANVRRHERVVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ADGLLA   QHE+DHL+GILFIDH+S LKR++  +K  +
Sbjct: 120 ITCKADGLLAIAFQHEIDHLDGILFIDHISPLKREIFRRKYRR 162


>gi|257057414|ref|YP_003135246.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
 gi|256587286|gb|ACU98419.1| peptide deformylase [Saccharomonospora viridis DSM 43017]
          Length = 183

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R +   + ++  L+++M E MY+ +G+GLAA QIGV  R+ V
Sbjct: 1   MTIHPICIVGEPVLHKPTREVSSFDDELATLVEDMFETMYAAEGVGLAANQIGVDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS+P       R+++  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDNDWEGCLSVPGESFPTGRASWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D       +   G  A CLQHE DHL+G L++D L   +     KKM K  +
Sbjct: 121 DVEGNPVEVEGTGYFARCLQHETDHLDGYLYLDRLIG-RHARAAKKMLKANK 171


>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
 gi|81693081|sp|Q6D002|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
          Length = 169

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|209515834|ref|ZP_03264696.1| peptide deformylase [Burkholderia sp. H160]
 gi|209503682|gb|EEA03676.1| peptide deformylase [Burkholderia sp. H160]
          Length = 167

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVTEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +          INP+I+  SD+    +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSETHDELL--ALINPEIVWSSDERKFSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCVQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
 gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide Deformylase From Thermotoga
           Maritima
          Length = 176

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 16  IRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 72

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+    +  V +EG LS P+   +++RS  I V+Y +   ++    
Sbjct: 73  --VGNGPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGEYVEEE 130

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +S  KR ++ KK+  + +
Sbjct: 131 LEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIAR 172


>gi|86131930|ref|ZP_01050527.1| peptide deformylase [Dokdonia donghaensis MED134]
 gi|85817752|gb|EAQ38926.1| peptide deformylase [Dokdonia donghaensis MED134]
          Length = 196

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L++ ++ I     ++  L++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MILPIVAYGSPVLKKKAKDITPEYPNLSELLENMYETMYGAHGVGLAAPQVGLPIRIFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN +I+    +   + EGCLSIP    DV R   
Sbjct: 61  DTTPFADDESFTPEEQKQLSSFKKTFINAEILEEEGEEWAFSEGCLSIPGINEDVFRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T++Y D N +      +GL+A  +QHE DH++GILF D LS LK+ +I  K++ + + +
Sbjct: 121 VTIKYQDENFKEHTETYEGLIARVIQHEYDHIDGILFTDKLSSLKKRLIKGKLANISKGK 180


>gi|157964273|ref|YP_001499097.1| peptide deformylase [Rickettsia massiliae MTU5]
 gi|157844049|gb|ABV84550.1| Polypeptide deformylase [Rickettsia massiliae MTU5]
          Length = 176

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+ML+ MY  DG GLAAVQ+GVL R++V
Sbjct: 2   MSILPIVTAPDERLKQKSQPVLEFTDQTRKFMDDMLKTMYHKDGAGLAAVQVGVLKRILV 61

Query: 61  IDLQDH-----AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++     EGC+S+P+ R +V R   I +R +
Sbjct: 62  IDIKDHDSVARPKDFYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRCL 121

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 122 DYHGKSQELQANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 174


>gi|86142250|ref|ZP_01060760.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
 gi|85831002|gb|EAQ49459.1| peptide deformylase [Leeuwenhoekiella blandensis MED217]
          Length = 196

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+ +  I +   ++  L+ NM E MY   G+GLAA QIG   RL V+
Sbjct: 1   MILPIVAYGDPVLRKKAVEIPQDYPELKELVANMFETMYGASGVGLAAPQIGKAIRLFVV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  R     FINP+I+  + D   + EGCLSIP    DV R   
Sbjct: 61  DATPFADDEDLSDEEQERLRTFKKAFINPQILEETGDEWAFSEGCLSIPGINEDVFRCPI 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I ++Y D +    +   DGLLA  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 IKIKYQDEDFNEHVEEFDGLLARVIQHEYDHIEGILFTDKLSSLKKRIIKSKLAGISKGK 180


>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 170

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++P++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQPVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGDTGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 AFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
 gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
          Length = 193

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EK++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTEDRSEP---RVFVNPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|123384127|sp|Q1LT56|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 167

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  LR++S+P+ KIN+ I  ++ +M + MY  +GIGLAA Q+ +   ++V
Sbjct: 1   MSLLPILYYPDHRLRQISKPVNKINNSIYRIVYDMFDTMYHKNGIGLAAPQVNINLNIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++  ++   V INP+++  S +  +++  CLSIP+    V R+  I VR +D N  
Sbjct: 61  IDVSENKEQRL--VLINPELLAKSGETGIHEG-CLSIPEQHGFVPRAKNIKVRALDLNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              +  + L A C+QHE+DHL G LFID+LS LKR  + KKM +L++  D
Sbjct: 118 SFNLETNDLQAICIQHEMDHLVGKLFIDYLSPLKRQRLLKKMKQLIRNLD 167


>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli O157:H7 EDL933]
 gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|26249871|ref|NP_755911.1| peptide deformylase [Escherichia coli CFT073]
 gi|82545649|ref|YP_409596.1| peptide deformylase [Shigella boydii Sb227]
 gi|82778584|ref|YP_404933.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|89110724|ref|AP_004504.1| peptide deformylase [Escherichia coli str. K-12 substr. W3110]
 gi|91212713|ref|YP_542699.1| peptide deformylase [Escherichia coli UTI89]
 gi|110643525|ref|YP_671255.1| peptide deformylase [Escherichia coli 536]
 gi|117625569|ref|YP_858892.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157156138|ref|YP_001464754.1| peptide deformylase [Escherichia coli E24377A]
 gi|157162760|ref|YP_001460078.1| peptide deformylase [Escherichia coli HS]
 gi|168752265|ref|ZP_02777287.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|168758514|ref|ZP_02783521.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|168764969|ref|ZP_02789976.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|168769148|ref|ZP_02794155.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|168777856|ref|ZP_02802863.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|168783853|ref|ZP_02808860.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|168786176|ref|ZP_02811183.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|170018478|ref|YP_001723432.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|170082807|ref|YP_001732127.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170769511|ref|ZP_02903964.1| peptide deformylase [Escherichia albertii TW07627]
 gi|191169294|ref|ZP_03031043.1| peptide deformylase [Escherichia coli B7A]
 gi|191174456|ref|ZP_03035957.1| peptide deformylase [Escherichia coli F11]
 gi|193066484|ref|ZP_03047528.1| peptide deformylase [Escherichia coli E22]
 gi|193071544|ref|ZP_03052453.1| peptide deformylase [Escherichia coli E110019]
 gi|194430283|ref|ZP_03062778.1| peptide deformylase [Escherichia coli B171]
 gi|194435085|ref|ZP_03067323.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194439997|ref|ZP_03072055.1| peptide deformylase [Escherichia coli 101-1]
 gi|195939834|ref|ZP_03085216.1| peptide deformylase [Escherichia coli O157:H7 str. EC4024]
 gi|208806494|ref|ZP_03248831.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208814593|ref|ZP_03255922.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208821413|ref|ZP_03261733.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209400361|ref|YP_002272743.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209920752|ref|YP_002294836.1| peptide deformylase [Escherichia coli SE11]
 gi|215488586|ref|YP_002331017.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217325115|ref|ZP_03441199.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218550562|ref|YP_002384353.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218555844|ref|YP_002388757.1| peptide deformylase [Escherichia coli IAI1]
 gi|218560348|ref|YP_002393261.1| peptide deformylase [Escherichia coli S88]
 gi|218691573|ref|YP_002399785.1| peptide deformylase [Escherichia coli ED1a]
 gi|218696979|ref|YP_002404646.1| peptide deformylase [Escherichia coli 55989]
 gi|218706894|ref|YP_002414413.1| peptide deformylase [Escherichia coli UMN026]
 gi|227883418|ref|ZP_04001223.1| peptide deformylase [Escherichia coli 83972]
 gi|237703016|ref|ZP_04533497.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|238902377|ref|YP_002928173.1| peptide deformylase [Escherichia coli BW2952]
 gi|253771890|ref|YP_003034721.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038447|ref|ZP_04872503.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|254163214|ref|YP_003046322.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|254795223|ref|YP_003080060.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|256020645|ref|ZP_05434510.1| peptide deformylase [Shigella sp. D9]
 gi|256025986|ref|ZP_05439851.1| peptide deformylase [Escherichia sp. 4_1_40B]
 gi|260846084|ref|YP_003223862.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|261224591|ref|ZP_05938872.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254515|ref|ZP_05947048.1| peptide deformylase [Escherichia coli O157:H7 str. FRIK966]
 gi|293406884|ref|ZP_06650808.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|293412705|ref|ZP_06655373.1| peptide deformylase [Escherichia coli B354]
 gi|293416705|ref|ZP_06659342.1| peptide deformylase [Escherichia coli B185]
 gi|293453605|ref|ZP_06664024.1| peptide deformylase [Escherichia coli B088]
 gi|297517904|ref|ZP_06936290.1| peptide deformylase [Escherichia coli OP50]
 gi|298382625|ref|ZP_06992220.1| def [Escherichia coli FVEC1302]
 gi|300815503|ref|ZP_07095728.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300896634|ref|ZP_07115151.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300903535|ref|ZP_07121457.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300918261|ref|ZP_07134865.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300921905|ref|ZP_07138060.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300932179|ref|ZP_07147459.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300973966|ref|ZP_07172373.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300979823|ref|ZP_07174725.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|301018856|ref|ZP_07183095.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|301021204|ref|ZP_07185238.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|301046057|ref|ZP_07193236.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|301305496|ref|ZP_07211588.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|301325148|ref|ZP_07218680.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301643894|ref|ZP_07243924.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|306816371|ref|ZP_07450509.1| peptide deformylase [Escherichia coli NC101]
 gi|307139969|ref|ZP_07499325.1| peptide deformylase [Escherichia coli H736]
 gi|307315135|ref|ZP_07594718.1| peptide deformylase [Escherichia coli W]
 gi|309794562|ref|ZP_07688984.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|312968388|ref|ZP_07782598.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312972452|ref|ZP_07786626.1| peptide deformylase [Escherichia coli 1827-70]
 gi|331643982|ref|ZP_08345111.1| peptide deformylase [Escherichia coli H736]
 gi|331649083|ref|ZP_08350169.1| peptide deformylase [Escherichia coli M605]
 gi|331654879|ref|ZP_08355878.1| peptide deformylase [Escherichia coli M718]
 gi|331659577|ref|ZP_08360515.1| peptide deformylase [Escherichia coli TA206]
 gi|331664899|ref|ZP_08365800.1| peptide deformylase [Escherichia coli TA143]
 gi|331670116|ref|ZP_08370955.1| peptide deformylase [Escherichia coli TA271]
 gi|331679355|ref|ZP_08380025.1| peptide deformylase [Escherichia coli H591]
 gi|62288071|sp|P0A6K3|DEF_ECOLI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288072|sp|P0A6K4|DEF_ECOL6 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|62288073|sp|P0A6K5|DEF_ECO57 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122990717|sp|Q1R646|DEF_ECOUT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123048786|sp|Q0TCH5|DEF_ECOL5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123728325|sp|Q31VZ0|DEF_SHIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123769545|sp|Q32B63|DEF_SHIDS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512616|sp|A1AGH8|DEF_ECOK1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167012062|sp|A8A591|DEF_ECOHS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083070|sp|B1IQ13|DEF_ECOLC RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|229487486|sp|B1X6D9|DEF_ECODH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058209|sp|B6I200|DEF_ECOSE RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|238058220|sp|B5YT06|DEF_ECO5E RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767581|sp|B7UK10|DEF_ECO27 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767582|sp|B7MCQ2|DEF_ECO45 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767583|sp|B7LHY3|DEF_ECO55 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767585|sp|B7N171|DEF_ECO81 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767586|sp|B7M0Z2|DEF_ECO8A RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767587|sp|B7NDQ8|DEF_ECOLU RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767589|sp|B7LRQ3|DEF_ESCF3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|259645179|sp|C4ZUE1|DEF_ECOBW RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|266618787|pdb|3K6L|A Chain A, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618788|pdb|3K6L|B Chain B, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|266618789|pdb|3K6L|C Chain C, The Structure Of E.Coli Peptide Deformylase (Pdf) In
           Complex With Peptidomimetic Ligand Bb2827
 gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase [Escherichia coli O157:H7 str. EDL933]
 gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase [Escherichia coli CFT073]
 gi|41474|emb|CAA45206.1| fms [Escherichia coli K-12]
 gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli K-12]
 gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
 gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA deformylase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli str. K-12 substr. MG1655]
 gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli O157:H7 str. Sakai]
 gi|81242732|gb|ABB63442.1| peptide deformylase [Shigella dysenteriae Sd197]
 gi|81247060|gb|ABB67768.1| peptide deformylase [Shigella boydii Sb227]
 gi|85676755|dbj|BAE78005.1| peptide deformylase [Escherichia coli str. K12 substr. W3110]
 gi|91074287|gb|ABE09168.1| peptide deformylase [Escherichia coli UTI89]
 gi|110345117|gb|ABG71354.1| peptide deformylase [Escherichia coli 536]
 gi|115514693|gb|ABJ02768.1| peptide deformylase [Escherichia coli APEC O1]
 gi|157068440|gb|ABV07695.1| peptide deformylase [Escherichia coli HS]
 gi|157078168|gb|ABV17876.1| peptide deformylase [Escherichia coli E24377A]
 gi|169753406|gb|ACA76105.1| peptide deformylase [Escherichia coli ATCC 8739]
 gi|169890642|gb|ACB04349.1| peptide deformylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170121568|gb|EDS90499.1| peptide deformylase [Escherichia albertii TW07627]
 gi|187766994|gb|EDU30838.1| peptide deformylase [Escherichia coli O157:H7 str. EC4196]
 gi|188013857|gb|EDU51979.1| peptide deformylase [Escherichia coli O157:H7 str. EC4113]
 gi|188998869|gb|EDU67855.1| peptide deformylase [Escherichia coli O157:H7 str. EC4076]
 gi|189354695|gb|EDU73114.1| peptide deformylase [Escherichia coli O157:H7 str. EC4401]
 gi|189361833|gb|EDU80252.1| peptide deformylase [Escherichia coli O157:H7 str. EC4486]
 gi|189365123|gb|EDU83539.1| peptide deformylase [Escherichia coli O157:H7 str. EC4501]
 gi|189374112|gb|EDU92528.1| peptide deformylase [Escherichia coli O157:H7 str. EC869]
 gi|190900649|gb|EDV60449.1| peptide deformylase [Escherichia coli B7A]
 gi|190905264|gb|EDV64902.1| peptide deformylase [Escherichia coli F11]
 gi|192925865|gb|EDV80515.1| peptide deformylase [Escherichia coli E22]
 gi|192955132|gb|EDV85626.1| peptide deformylase [Escherichia coli E110019]
 gi|194411672|gb|EDX27999.1| peptide deformylase [Escherichia coli B171]
 gi|194416692|gb|EDX32823.1| peptide deformylase [Shigella dysenteriae 1012]
 gi|194421049|gb|EDX37078.1| peptide deformylase [Escherichia coli 101-1]
 gi|208726295|gb|EDZ75896.1| peptide deformylase [Escherichia coli O157:H7 str. EC4206]
 gi|208735870|gb|EDZ84557.1| peptide deformylase [Escherichia coli O157:H7 str. EC4045]
 gi|208741536|gb|EDZ89218.1| peptide deformylase [Escherichia coli O157:H7 str. EC4042]
 gi|209161761|gb|ACI39194.1| peptide deformylase [Escherichia coli O157:H7 str. EC4115]
 gi|209757358|gb|ACI76991.1| peptide deformylase [Escherichia coli]
 gi|209757360|gb|ACI76992.1| peptide deformylase [Escherichia coli]
 gi|209757362|gb|ACI76993.1| peptide deformylase [Escherichia coli]
 gi|209757366|gb|ACI76995.1| peptide deformylase [Escherichia coli]
 gi|209914011|dbj|BAG79085.1| polypeptide deformylase [Escherichia coli SE11]
 gi|215266658|emb|CAS11097.1| peptide deformylase [Escherichia coli O127:H6 str. E2348/69]
 gi|217321336|gb|EEC29760.1| peptide deformylase [Escherichia coli O157:H7 str. TW14588]
 gi|218353711|emb|CAU99982.1| peptide deformylase [Escherichia coli 55989]
 gi|218358103|emb|CAQ90750.1| peptide deformylase [Escherichia fergusonii ATCC 35469]
 gi|218362612|emb|CAR00238.1| peptide deformylase [Escherichia coli IAI1]
 gi|218367117|emb|CAR04891.1| peptide deformylase [Escherichia coli S88]
 gi|218429137|emb|CAR10089.2| peptide deformylase [Escherichia coli ED1a]
 gi|218433991|emb|CAR14908.1| peptide deformylase [Escherichia coli UMN026]
 gi|222034995|emb|CAP77738.1| Peptide deformylase [Escherichia coli LF82]
 gi|226838953|gb|EEH70976.1| peptide deformylase [Escherichia sp. 1_1_43]
 gi|226902280|gb|EEH88539.1| peptide deformylase [Escherichia sp. 3_2_53FAA]
 gi|227839562|gb|EEJ50028.1| peptide deformylase [Escherichia coli 83972]
 gi|238861987|gb|ACR63985.1| peptide deformylase [Escherichia coli BW2952]
 gi|242378813|emb|CAQ33605.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|253322934|gb|ACT27536.1| peptide deformylase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975115|gb|ACT40786.1| peptide deformylase [Escherichia coli B str. REL606]
 gi|253979271|gb|ACT44941.1| peptide deformylase [Escherichia coli BL21(DE3)]
 gi|254594623|gb|ACT73984.1| peptide deformylase [Escherichia coli O157:H7 str. TW14359]
 gi|257761231|dbj|BAI32728.1| peptide deformylase [Escherichia coli O103:H2 str. 12009]
 gi|260447695|gb|ACX38117.1| peptide deformylase [Escherichia coli DH1]
 gi|281180321|dbj|BAI56651.1| polypeptide deformylase [Escherichia coli SE15]
 gi|284923293|emb|CBG36387.1| polypeptide deformylase [Escherichia coli 042]
 gi|291321731|gb|EFE61162.1| peptide deformylase [Escherichia coli B088]
 gi|291425695|gb|EFE98729.1| peptide deformylase [Escherichia coli FVEC1412]
 gi|291431281|gb|EFF04266.1| peptide deformylase [Escherichia coli B185]
 gi|291468352|gb|EFF10845.1| peptide deformylase [Escherichia coli B354]
 gi|294491738|gb|ADE90494.1| peptide deformylase [Escherichia coli IHE3034]
 gi|298276461|gb|EFI17979.1| def [Escherichia coli FVEC1302]
 gi|299881612|gb|EFI89823.1| peptide deformylase [Escherichia coli MS 196-1]
 gi|300301942|gb|EFJ58327.1| peptide deformylase [Escherichia coli MS 185-1]
 gi|300308976|gb|EFJ63496.1| peptide deformylase [Escherichia coli MS 200-1]
 gi|300359511|gb|EFJ75381.1| peptide deformylase [Escherichia coli MS 198-1]
 gi|300399513|gb|EFJ83051.1| peptide deformylase [Escherichia coli MS 69-1]
 gi|300404408|gb|EFJ87946.1| peptide deformylase [Escherichia coli MS 84-1]
 gi|300409429|gb|EFJ92967.1| peptide deformylase [Escherichia coli MS 45-1]
 gi|300414522|gb|EFJ97832.1| peptide deformylase [Escherichia coli MS 115-1]
 gi|300421706|gb|EFK05017.1| peptide deformylase [Escherichia coli MS 182-1]
 gi|300460063|gb|EFK23556.1| peptide deformylase [Escherichia coli MS 187-1]
 gi|300532395|gb|EFK53457.1| peptide deformylase [Escherichia coli MS 107-1]
 gi|300839191|gb|EFK66951.1| peptide deformylase [Escherichia coli MS 124-1]
 gi|300847980|gb|EFK75740.1| peptide deformylase [Escherichia coli MS 78-1]
 gi|301077737|gb|EFK92543.1| peptide deformylase [Escherichia coli MS 146-1]
 gi|305850767|gb|EFM51224.1| peptide deformylase [Escherichia coli NC101]
 gi|306905484|gb|EFN36019.1| peptide deformylase [Escherichia coli W]
 gi|307555374|gb|ADN48149.1| peptide deformylase [Escherichia coli ABU 83972]
 gi|307628321|gb|ADN72625.1| peptide deformylase [Escherichia coli UM146]
 gi|308121612|gb|EFO58874.1| peptide deformylase [Escherichia coli MS 145-7]
 gi|309703698|emb|CBJ03039.1| polypeptide deformylase [Escherichia coli ETEC H10407]
 gi|310334829|gb|EFQ01034.1| peptide deformylase [Escherichia coli 1827-70]
 gi|312287213|gb|EFR15123.1| peptide deformylase [Escherichia coli 2362-75]
 gi|312947837|gb|ADR28664.1| peptide deformylase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062578|gb|ADT76905.1| peptide deformylase [Escherichia coli W]
 gi|315137862|dbj|BAJ45021.1| peptide deformylase [Escherichia coli DH1]
 gi|315255870|gb|EFU35838.1| peptide deformylase [Escherichia coli MS 85-1]
 gi|315284579|gb|EFU44024.1| peptide deformylase [Escherichia coli MS 110-3]
 gi|315292338|gb|EFU51690.1| peptide deformylase [Escherichia coli MS 153-1]
 gi|315297152|gb|EFU56432.1| peptide deformylase [Escherichia coli MS 16-3]
 gi|315617089|gb|EFU97699.1| peptide deformylase [Escherichia coli 3431]
 gi|320173931|gb|EFW49107.1| Peptide deformylase [Shigella dysenteriae CDC 74-1112]
 gi|320182716|gb|EFW57602.1| Peptide deformylase [Shigella boydii ATCC 9905]
 gi|320187008|gb|EFW61720.1| Peptide deformylase [Shigella flexneri CDC 796-83]
 gi|320191679|gb|EFW66329.1| Peptide deformylase [Escherichia coli O157:H7 str. EC1212]
 gi|320195378|gb|EFW70005.1| Peptide deformylase [Escherichia coli WV_060327]
 gi|320199474|gb|EFW74064.1| Peptide deformylase [Escherichia coli EC4100B]
 gi|320639591|gb|EFX09185.1| peptide deformylase [Escherichia coli O157:H7 str. G5101]
 gi|320645089|gb|EFX14105.1| peptide deformylase [Escherichia coli O157:H- str. 493-89]
 gi|320650400|gb|EFX18866.1| peptide deformylase [Escherichia coli O157:H- str. H 2687]
 gi|320655925|gb|EFX23845.1| peptide deformylase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320666399|gb|EFX33382.1| peptide deformylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323162965|gb|EFZ48800.1| peptide deformylase [Escherichia coli E128010]
 gi|323182765|gb|EFZ68166.1| peptide deformylase [Escherichia coli 1357]
 gi|323189108|gb|EFZ74392.1| peptide deformylase [Escherichia coli RN587/1]
 gi|323376835|gb|ADX49103.1| peptide deformylase [Escherichia coli KO11]
 gi|323934515|gb|EGB30923.1| peptide deformylase [Escherichia coli E1520]
 gi|323939292|gb|EGB35504.1| peptide deformylase [Escherichia coli E482]
 gi|323944293|gb|EGB40369.1| peptide deformylase [Escherichia coli H120]
 gi|323950200|gb|EGB46082.1| peptide deformylase [Escherichia coli H252]
 gi|323954591|gb|EGB50374.1| peptide deformylase [Escherichia coli H263]
 gi|323966248|gb|EGB61683.1| peptide deformylase [Escherichia coli M863]
 gi|323970090|gb|EGB65364.1| peptide deformylase [Escherichia coli TA007]
 gi|323974761|gb|EGB69874.1| peptide deformylase [Escherichia coli TW10509]
 gi|324009052|gb|EGB78271.1| peptide deformylase [Escherichia coli MS 57-2]
 gi|324014963|gb|EGB84182.1| peptide deformylase [Escherichia coli MS 60-1]
 gi|324111965|gb|EGC05944.1| peptide deformylase [Escherichia fergusonii B253]
 gi|324116324|gb|EGC10244.1| peptide deformylase [Escherichia coli E1167]
 gi|326342535|gb|EGD66309.1| Peptide deformylase [Escherichia coli O157:H7 str. 1044]
 gi|326344522|gb|EGD68271.1| Peptide deformylase [Escherichia coli O157:H7 str. 1125]
 gi|327250935|gb|EGE62628.1| peptide deformylase [Escherichia coli STEC_7v]
 gi|330909331|gb|EGH37845.1| peptide deformylase [Escherichia coli AA86]
 gi|331036276|gb|EGI08502.1| peptide deformylase [Escherichia coli H736]
 gi|331041581|gb|EGI13725.1| peptide deformylase [Escherichia coli M605]
 gi|331046894|gb|EGI18972.1| peptide deformylase [Escherichia coli M718]
 gi|331052792|gb|EGI24825.1| peptide deformylase [Escherichia coli TA206]
 gi|331057409|gb|EGI29395.1| peptide deformylase [Escherichia coli TA143]
 gi|331062178|gb|EGI34098.1| peptide deformylase [Escherichia coli TA271]
 gi|331072527|gb|EGI43852.1| peptide deformylase [Escherichia coli H591]
 gi|332085435|gb|EGI90601.1| peptide deformylase [Shigella boydii 5216-82]
 gi|332086260|gb|EGI91416.1| peptide deformylase [Shigella dysenteriae 155-74]
 gi|332090315|gb|EGI95413.1| peptide deformylase [Shigella boydii 3594-74]
 gi|332104193|gb|EGJ07539.1| peptide deformylase [Shigella sp. D9]
          Length = 169

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|190571318|ref|YP_001975676.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018714|ref|ZP_03334522.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|238058217|sp|B3CMB1|DEF_WOLPP RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|190357590|emb|CAQ55031.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995665|gb|EEB56305.1| polypeptide deformylase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 179

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K P+VI PD  L   +  +  I   I  L+++M E MY  +G+GLAAVQ+GVL R+ +
Sbjct: 1   MSKLPIVIAPDERLTTRASEVIDITDKIKELVNDMFETMYYAEGLGLAAVQVGVLKRIFI 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   S +  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDVQPEKAEDGPAGYESTGKFCMINPEITELSGEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y + N + Q + A G LA C+QHELDHLNGIL++ HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKNLNNEEQTLKASGWLARCIQHELDHLNGILYVRHLSKLKYDMAMKKAQKVKRHYE 178


>gi|300705526|ref|YP_003747129.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
 gi|299073190|emb|CBJ44548.1| peptide deformylase [Ralstonia solanacearum CFBP2957]
          Length = 169

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   G+GLAA QI V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGVGLAATQIDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLER 167


>gi|281306913|pdb|2W3T|A Chain A, Chloro Complex Of The Ni-Form Of E.Coli Deformylase
 gi|281306914|pdb|2W3U|A Chain A, Formate Complex Of The Ni-Form Of E.Coli Deformylase
          Length = 188

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|323959563|gb|EGB55216.1| peptide deformylase [Escherichia coli H489]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   +  +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKNGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|225024414|ref|ZP_03713606.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
 gi|224942795|gb|EEG24004.1| hypothetical protein EIKCOROL_01289 [Eikenella corrodens ATCC
           23834]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILRYPDPRLNLVAKPVEQVDERIKQLVADMAETMYEAKGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   +      +   +I   D  ++Y+EGCLS+P     V R+  I    +D   +
Sbjct: 61  MDLSESRDQLQ---VLINPVIIERDGETIYEEGCLSVPGVYDKVTRAESIVAEALDAEGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I+ADGL A C+QHE+DHL+G +F+ +LSRLK++ I  KM KL +
Sbjct: 118 PYTIHADGLQAICIQHEIDHLDGKVFVQYLSRLKQERIKTKMKKLDK 164


>gi|83748633|ref|ZP_00945651.1| Peptide deformylase [Ralstonia solanacearum UW551]
 gi|83724677|gb|EAP71837.1| Peptide deformylase [Ralstonia solanacearum UW551]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|114561212|ref|YP_748725.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
 gi|114332505|gb|ABI69887.1| peptide deformylase [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR +++P+      +   IDNMLE MY   GIGLAA Q+    +L+V
Sbjct: 19  MPLLNVLRFPDERLRTIAQPVTDFGPQLQTQIDNMLETMYLEKGIGLAATQVDFHQQLIV 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I  S      +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 79  MDLQDEVERPT---IFINPQIVASSGDLANEEGCLSVPGIYAKVDRAEFVTLKALDRHGK 135

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             I+ AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 136 EFIVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 183


>gi|295675125|ref|YP_003603649.1| peptide deformylase [Burkholderia sp. CCGE1002]
 gi|295434968|gb|ADG14138.1| peptide deformylase [Burkholderia sp. CCGE1002]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +         FINP+I+  SD   + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSETHDELL--AFINPEIVWSSDQRKLSEEGCLSVPGIYDNVERAEKVRVRALNQKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|322434765|ref|YP_004216977.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
 gi|321162492|gb|ADW68197.1| peptide deformylase [Acidobacterium sp. MP5ACTX9]
          Length = 188

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           ++ +PDP+L +    +   +  +  L+D M E MY   GIGLAA QIG+  R+ VID+  
Sbjct: 24  VLKWPDPVLAKKGVEVTAFDDRLKTLVDEMFESMYEAQGIGLAAPQIGISERITVIDVSF 83

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
             + K+ +  INP II   +   V +EGCLS+PD R  V R+ ++ V+  D       + 
Sbjct: 84  KKNPKDRLALINPVIIEA-EGKQVEEEGCLSLPDIREKVSRAGWVKVKAQDVTGTWFEVE 142

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            D LLA  LQHE+DHL+G+LFID +SRLKR+++ +K+ K+ +  +
Sbjct: 143 GDELLARALQHEIDHLDGVLFIDRISRLKRELVLRKIKKMQKNGE 187


>gi|300822910|ref|ZP_07103046.1| peptide deformylase [Escherichia coli MS 119-7]
 gi|300524676|gb|EFK45745.1| peptide deformylase [Escherichia coli MS 119-7]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKLKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|323524423|ref|YP_004226576.1| peptide deformylase [Burkholderia sp. CCGE1001]
 gi|323381425|gb|ADX53516.1| peptide deformylase [Burkholderia sp. CCGE1001]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIIWSSDEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFELDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|42520067|ref|NP_965982.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81700107|sp|Q73IJ6|DEF_WOLPM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|42409804|gb|AAS13916.1| polypeptide deformylase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 179

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+   ++KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHEIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|156932268|ref|YP_001436184.1| peptide deformylase [Cronobacter sakazakii ATCC BAA-894]
 gi|166198516|sp|A7MPE9|DEF_ENTS8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|156530522|gb|ABU75348.1| hypothetical protein ESA_00039 [Cronobacter sakazakii ATCC BAA-894]
          Length = 171

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 118 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 166


>gi|91790468|ref|YP_551420.1| peptide deformylase [Polaromonas sp. JS666]
 gi|91699693|gb|ABE46522.1| peptide deformylase [Polaromonas sp. JS666]
          Length = 173

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M +  ++ +PDP L  +++P+  +++ +  L  +M + MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MTQLTILRYPDPRLHTIAKPVGAVDARLRQLASDMFDTMYEAAGIGLAATQVDVHERLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   R  P+V INP+I+  S +  V  EGCLS+P     V+RS  + V+ +D + +
Sbjct: 61  IDVSED--RDQPLVLINPEILWASPETRVGDEGCLSVPGIYDGVERSVAVKVQALDLDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            Q+  A+G+LA C+QHE+DHL G +F+++LS LKR+ I  KM K  +  +
Sbjct: 119 LQVHAAEGMLAVCIQHEMDHLMGKVFVEYLSPLKRNRIKTKMIKQKKDEE 168


>gi|239929017|ref|ZP_04685970.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437357|ref|ZP_06576747.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291340252|gb|EFE67208.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
          Length = 216

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECRDVTEFDDELRKLVDDMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPELVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEW 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKEALRQMAE 205


>gi|207741949|ref|YP_002258341.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
 gi|206593335|emb|CAQ60262.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum IPO1609]
          Length = 174

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
 gi|81692121|sp|Q67PR5|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
          Length = 217

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  P  +LR+ ++P+ KIN+ I  L+D+M E MY+  G+GLAA Q+GV  RL+V
Sbjct: 1   MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D QD + +      +    I  ++ +    EGCLSIP    DV R   + V  +D   +
Sbjct: 61  VDPQDGSGQL---YQLINPEIVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
              I A+G LA   QHE+DHL+GIL+ D  + L+
Sbjct: 118 KVWIDAEGYLARIFQHEIDHLDGILYTDKCTNLR 151


>gi|187732040|ref|YP_001881970.1| peptide deformylase [Shigella boydii CDC 3083-94]
 gi|238689490|sp|B2U2Q4|DEF_SHIB3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|187429032|gb|ACD08306.1| peptide deformylase [Shigella boydii CDC 3083-94]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP  RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPKQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|209693699|ref|YP_002261627.1| peptide deformylase [Aliivibrio salmonicida LFI1238]
 gi|238058218|sp|B6EP21|DEF_ALISL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|208007650|emb|CAQ77760.1| peptide deformylase (polypeptide deformylase) [Aliivibrio
           salmonicida LFI1238]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 3/157 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR V++P++ +  +I   ID+M+E MY  +GIGLAA Q+    R+VV
Sbjct: 1   MAVLEVLTFPDDRLRTVAKPVKTVTPEIQTFIDDMIETMYDEEGIGLAATQVDFHQRIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++  + +   +IT        +EGCLS+P  +  V RSA ++V  +D +  
Sbjct: 61  I---DVSETRDEPMVLINPVITQKSGDDGIEEGCLSVPGAKGMVPRSAEVSVTALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
                AD LLA C+QHELDHL G LF+D+LS LKR  
Sbjct: 118 EFSFDADDLLAICVQHELDHLEGKLFVDYLSPLKRKR 154


>gi|207727558|ref|YP_002255952.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
 gi|206590795|emb|CAQ56407.1| peptide deformylase 1 (pdf 1) (polypeptide deformylase1) protein
           [Ralstonia solanacearum MolK2]
          Length = 174

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 102/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+  ++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 6   MALLNILQYPDPRLHKVAKPVAAVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 65

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 66  IDVSESRDEL--RVFINPEIVWASQERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 124 SFELDADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 172


>gi|300692919|ref|YP_003753914.1| peptide deformylase [Ralstonia solanacearum PSI07]
 gi|299079979|emb|CBJ52656.1| peptide deformylase [Ralstonia solanacearum PSI07]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +V++P+ +++  I  L+ +M E MY   GIGLAA Q+ V  R++ 
Sbjct: 1   MALLNILQYPDPRLHKVAKPVAEVDGRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +        VFINP+I+  S +  V+ EGCLS+PD    V+R   + VR ++   +
Sbjct: 61  IDVSESRDELR--VFINPEILWASKERKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G +F+++LS LK++ I  K+ K    R
Sbjct: 119 TFELEADGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQFER 167


>gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 167

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|83404829|ref|YP_424843.1| peptide deformylase [Escherichia coli]
 gi|157149370|ref|YP_001451409.1| peptide deformylase [Escherichia coli E24377A]
 gi|298206469|ref|YP_003717571.1| peptide deformylase [Escherichia coli ETEC 1392/75]
 gi|83308554|emb|CAI79523.1| peptide deformylase [Escherichia coli]
 gi|157076537|gb|ABV16250.1| peptide deformylase [Escherichia coli E24377A]
 gi|297374341|emb|CBL93313.1| peptide deformylase [Escherichia coli ETEC 1392/75]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|124265476|ref|YP_001019480.1| peptide deformylase [Methylibium petroleiphilum PM1]
 gi|124258251|gb|ABM93245.1| peptide deformylase [Methylibium petroleiphilum PM1]
          Length = 170

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/170 (41%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L  V++P+++++  +  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MPLLDILRYPDPRLHTVAKPVKEVDERVRQLVDDMLETMYDAQGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +   P V INP+++  SD+  V  EGCLS+P     V R A +TVR +  + Q
Sbjct: 61  IDVSDDRNE--PRVLINPELLQVSDEMVVGDEGCLSVPQIYDKVPRHAKVTVRALGRDGQ 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                A+ LL+ C+QHE+DHL G +F+++LS LKR+ I  KM  L + RD
Sbjct: 119 AYQFDAEELLSVCVQHEMDHLMGKVFVEYLSPLKRNRIKSKM--LKKTRD 166


>gi|239948084|ref|ZP_04699837.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|241563350|ref|XP_002401667.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|215501859|gb|EEC11353.1| polypeptide deformylase, putative [Ixodes scapularis]
 gi|239922360|gb|EER22384.1| peptide deformylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 175

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/173 (39%), Positives = 104/173 (60%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+P+ +        +D+M++ MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVKAPDERLKQKSQPVLEFTDQTRKFMDDMIKTMYHEDGAGLAAVQVGVLKRILV 60

Query: 61  IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P          P+II  S++     EGC+S+P+ R +V R   I +RY+
Sbjct: 61  IDIKDHDSVERPKDLYPLFIVNPEIIEKSEELVTANEGCISLPEQRIEVARPESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSNLKRDVVLRKLKKLKNN 173


>gi|99034823|ref|ZP_01314739.1| hypothetical protein Wendoof_01000437 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 179

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI PD  L   +  +  IN  I  L+++M E MY  +G+GLAAVQ+GVL R+ V
Sbjct: 1   MSILPIVIAPDERLITRASEVTDINDKIKELVNDMFETMYDAEGLGLAAVQVGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q       P           INP+I   SD+  + +EGCLSIP+    +KR  ++TV
Sbjct: 61  MDIQLETIENEPAGYGSTGKFYMINPEITELSDEQVILKEGCLSIPEQSHKIKRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D + + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K+ +  +
Sbjct: 121 KYKDLDNEEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAQKVKKHYE 178


>gi|85060224|ref|YP_455926.1| peptide deformylase [Sodalis glossinidius str. 'morsitans']
 gi|123738923|sp|Q2NQQ4|DEF_SODGM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|84780744|dbj|BAE75521.1| polypeptide deformylase [Sodalis glossinidius str. 'morsitans']
          Length = 171

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR+V++P+  +N  I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSLLQVLHYPDERLRKVAKPVVDVNDAIRRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +   EGCLSIPD R  V R+  + V+ +D +  
Sbjct: 61  IDVSESRDQRL---VMINPELLEKSGETGIDEGCLSIPDQRGFVPRAEKVKVQALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD LLA C+QHE+DHL G LF+D+LS LKR  I +KM KL ++
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFVDYLSPLKRQRIRQKMEKLARM 165


>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|74313805|ref|YP_312224.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110807134|ref|YP_690654.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170680840|ref|YP_001745549.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218702049|ref|YP_002409678.1| peptide deformylase [Escherichia coli IAI39]
 gi|260857407|ref|YP_003231298.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|260870029|ref|YP_003236431.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|300935284|ref|ZP_07150295.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|331674794|ref|ZP_08375551.1| peptide deformylase [Escherichia coli TA280]
 gi|331684929|ref|ZP_08385515.1| peptide deformylase [Escherichia coli H299]
 gi|39930879|sp|Q83PZ1|DEF_SHIFL RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|122957164|sp|Q0T016|DEF_SHIF8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|123773439|sp|Q3YWX3|DEF_SHISS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767584|sp|B7NLK6|DEF_ECO7I RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767588|sp|B1LGP3|DEF_ECOSM RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|24053759|gb|AAN44781.1| peptide deformylase [Shigella flexneri 2a str. 301]
 gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
 gi|73857282|gb|AAZ89989.1| peptide deformylase [Shigella sonnei Ss046]
 gi|110616682|gb|ABF05349.1| peptide deformylase [Shigella flexneri 5 str. 8401]
 gi|170518558|gb|ACB16736.1| peptide deformylase [Escherichia coli SMS-3-5]
 gi|218372035|emb|CAR19895.1| peptide deformylase [Escherichia coli IAI39]
 gi|257756056|dbj|BAI27558.1| peptide deformylase [Escherichia coli O26:H11 str. 11368]
 gi|257766385|dbj|BAI37880.1| peptide deformylase [Escherichia coli O111:H- str. 11128]
 gi|281602655|gb|ADA75639.1| putative N-formylmethionyl-tRNA deformylase [Shigella flexneri
           2002017]
 gi|300459487|gb|EFK22980.1| peptide deformylase [Escherichia coli MS 21-1]
 gi|323154124|gb|EFZ40327.1| peptide deformylase [Escherichia coli EPECa14]
 gi|323164851|gb|EFZ50642.1| peptide deformylase [Shigella sonnei 53G]
 gi|323179177|gb|EFZ64751.1| peptide deformylase [Escherichia coli 1180]
 gi|331067703|gb|EGI39101.1| peptide deformylase [Escherichia coli TA280]
 gi|331077300|gb|EGI48512.1| peptide deformylase [Escherichia coli H299]
          Length = 169

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|312797602|ref|YP_004030524.1| peptide deformylase [Burkholderia rhizoxinica HKI 454]
 gi|312169377|emb|CBW76380.1| Peptide deformylase (EC 3.5.1.88) [Burkholderia rhizoxinica HKI
           454]
          Length = 169

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E+++  I  L+ +M E MY+  G+GLAA Q+ V  R+VV
Sbjct: 3   MALLNILHYPDKRLHKVAKPVERVDERIRKLVADMAETMYAASGVGLAATQVDVHERVVV 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D   R    VFINP+I+  SD+  + +EGCLS+P     V+R+  + VR ++ N +
Sbjct: 63  IDVSD--TRDALRVFINPEIVWSSDERDINEEGCLSVPRICDSVERAERVRVRALNENGE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I   M K  + R
Sbjct: 121 SFELECEGLLAICIQHEMDHLLGKVFVEYLSPLKQMRIKTTMKKFERAR 169


>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
 gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
 gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
 gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|54036954|sp|P63916|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|54040742|sp|P63915|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158512959|sp|A1KRE5|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189083074|sp|A9M464|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
 gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
 gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
 gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
 gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
 gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
 gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
 gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis 8013]
 gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
 gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
           meningitidis WUE 2594]
 gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
 gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
 gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
 gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
 gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
 gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
 gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
 gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
 gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
 gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
 gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
 gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
 gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
 gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
 gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|307728142|ref|YP_003905366.1| peptide deformylase [Burkholderia sp. CCGE1003]
 gi|307582677|gb|ADN56075.1| peptide deformylase [Burkholderia sp. CCGE1003]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSPLKQTRIKSKMKKLA 164


>gi|257091704|ref|YP_003165345.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044228|gb|ACV33416.1| peptide deformylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 167

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ FPDP LR+V+  ++KI+  I  L  +M E MY   GIGLAA Q+ V  R++V
Sbjct: 1   MSLLPILRFPDPRLRKVAARVDKIDDGIRRLARDMAETMYEAPGIGLAATQVDVHARVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  ++ ++ +    I   D   V +EGCLS+P     V+R+  + VRY D +  
Sbjct: 61  V---DASETRDQLLTLINPEILQQDGLQVCEEGCLSVPGVYDKVERAEHVVVRYQDLDGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + A GLLA CLQHE+DHL G +F++HLS+LK+  I  K++K  ++
Sbjct: 118 EQTVDATGLLAVCLQHEIDHLQGRVFVEHLSQLKQLRIRNKLAKQARI 165


>gi|294789398|ref|ZP_06754635.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
 gi|294482611|gb|EFG30301.1| peptide deformylase [Simonsiella muelleri ATCC 29453]
          Length = 171

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L  V++P+ ++N  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLPILKYPDPKLHTVAKPVSEVNDRIKKLVADMAETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           IDL +  ++    + +   IIT  D  + Y+EGCLS+P     V R+  +TV ++D +  
Sbjct: 61  IDLSEERNQL---ITLINPIITHKDGETTYEEGCLSVPGVYDTVTRAERVTVEFLDADGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            Q + ADGLLA C+QHELDHL G +F+++LS LK++ I  KM K  + 
Sbjct: 118 AQKLDADGLLAICIQHELDHLQGKVFVEYLSPLKQNRIKTKMKKRERE 165


>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
 gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
          Length = 167

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 100/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V+ P+ +I   I  LI++M E MY+  GIGLAA Q+ V  R++V
Sbjct: 1   MAILKILQYPDEKLHTVAAPVSQITDKIRTLINDMAETMYAAPGIGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  +N ++ +    IT S+  S Y+EGCLS+P     V+R+  + VR ++   +
Sbjct: 61  I---DTSEARNDLLVLINPEITASNGISDYEEGCLSVPGIYGKVQRAESVKVRALNAQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             ++ ADGLLA C+QHE+DHL G +F+++ SRLK+     K+ K  +
Sbjct: 118 SFVLDADGLLAVCIQHEMDHLAGKVFVEYWSRLKQVRTLAKLKKKQR 164


>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
 gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
          Length = 193

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 27  MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 86

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 87  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 143

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 144 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 190


>gi|182436096|ref|YP_001823815.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776722|ref|ZP_08235987.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
 gi|178464612|dbj|BAG19132.1| putative polypeptide deformylase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657055|gb|EGE41901.1| Peptide deformylase [Streptomyces cf. griseus XylebKG-1]
          Length = 212

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECKDVTEFDDALARLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHTGVICNPVLEELAPEARVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M +
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMEE 201


>gi|194439835|ref|ZP_03071900.1| peptide deformylase [Escherichia coli 101-1]
 gi|194421225|gb|EDX37247.1| peptide deformylase [Escherichia coli 101-1]
 gi|323974492|gb|EGB69619.1| peptide deformylase [Escherichia coli TW10509]
          Length = 169

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+  GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIRRIVDDMFETMYAEKGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A+GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
 gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIQKLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAESVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|300946508|ref|ZP_07160774.1| peptide deformylase [Escherichia coli MS 116-1]
 gi|300955324|ref|ZP_07167706.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300317768|gb|EFJ67552.1| peptide deformylase [Escherichia coli MS 175-1]
 gi|300453814|gb|EFK17434.1| peptide deformylase [Escherichia coli MS 116-1]
          Length = 169

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +  +D + +
Sbjct: 61  IDVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKICALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 166


>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica ST-640]
 gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|260599606|ref|YP_003212177.1| peptide deformylase [Cronobacter turicensis z3032]
 gi|260218783|emb|CBA34131.1| Peptide deformylase [Cronobacter turicensis z3032]
          Length = 177

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 107/169 (63%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N+DI  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 7   MSVLQVLHIPDERLRIVAEPVKEVNADIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 67  IDVSENRD---ERLVLINPELLEQSGETGIEEGCLSIPEQRAFVPRAEKVKIRALDRNGK 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS +KR  I +K+ KL +++
Sbjct: 124 SFELEADGLLAICIQHEMDHLVGKLFIDYLSPMKRQRIRQKVEKLDRMK 172


>gi|170694015|ref|ZP_02885171.1| peptide deformylase [Burkholderia graminis C4D1M]
 gi|170141087|gb|EDT09259.1| peptide deformylase [Burkholderia graminis C4D1M]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+E++N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNILNYPDKRLHKVAKPVEEVNDRIRRLVADMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D       + FINP+I+  S++  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSD--AHDQLLAFINPEIVWSSNEKKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGHVFVEYLSPLKQTRIKSKMKKLA 164


>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|239997891|ref|ZP_04717815.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
 gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
 gi|240081720|ref|ZP_04726263.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|240116732|ref|ZP_04730794.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|240118954|ref|ZP_04733016.1| peptide deformylase [Neisseria gonorrhoeae PID1]
 gi|240124492|ref|ZP_04737448.1| peptide deformylase [Neisseria gonorrhoeae PID332]
 gi|240129167|ref|ZP_04741828.1| peptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439507|ref|ZP_05793323.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
 gi|75507292|sp|Q5F5P6|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
 gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
 gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
 gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
 gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
 gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
 gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
          Length = 167

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|300741742|ref|ZP_07071763.1| peptide deformylase [Rothia dentocariosa M567]
 gi|300380927|gb|EFJ77489.1| peptide deformylase [Rothia dentocariosa M567]
          Length = 190

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +               EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDDREGYIINPVLETGTEPQEGG-----EGCLSVPGMKSDTPRMNWARVRGVDKMGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158


>gi|89890524|ref|ZP_01202034.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
 gi|89517439|gb|EAS20096.1| N-formylmethionyl-tRNA deformylase [Flavobacteria bacterium BBFL7]
          Length = 196

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V++ I     ++  +++NM E MY   G+GLAA Q+G+  R+ ++
Sbjct: 1   MIYPIVAYGDPVLRKVAKDITPDYPNLDKVLENMWETMYGASGVGLAAPQVGMPIRIFLV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        FIN  I+  + +   + EGCLSIP+ R DV R   
Sbjct: 61  DTSPFGDDPELTPEEQKELGSFKKAFINAHIVEENGEEWAFNEGCLSIPNVREDVFRPEE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+RY D N +       GL+A  +QHE DH+ GILF D +S LK+ +I  K++ + + +
Sbjct: 121 VTIRYCDENFKEVTETYTGLMARVIQHEYDHIEGILFTDKISSLKKRLIKGKLANISKGK 180


>gi|167648525|ref|YP_001686188.1| peptide deformylase [Caulobacter sp. K31]
 gi|189083067|sp|B0T1S9|DEF_CAUSK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|167350955|gb|ABZ73690.1| peptide deformylase [Caulobacter sp. K31]
          Length = 173

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/171 (39%), Positives = 103/171 (60%), Gaps = 4/171 (2%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     +L++VS+ +  ++  +  L+D+MLE MY   GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTVDNAADLAVLKQVSKDVPAVDDALRGLMDDMLETMYDAPGIGLAAVQVGELV 60

Query: 57  RLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            ++V+DL        P  F+NPKI   S++   Y+EGCLS+P+    V+R A + + Y++
Sbjct: 61  NVIVMDLAREGEEPAPRYFVNPKITWASEELFEYEEGCLSVPEVYDAVERPAKVKISYLN 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              +     A+ L A C+QHE+DHL G+LFIDHLSRLKRD    K+ K  +
Sbjct: 121 YQGEAVEEDAEELFAVCIQHEMDHLKGVLFIDHLSRLKRDRAISKVKKARR 171


>gi|94971313|ref|YP_593361.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
 gi|94553363|gb|ABF43287.1| peptide deformylase [Candidatus Koribacter versatilis Ellin345]
          Length = 170

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 1/169 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V   DP+L R +  + + +  +  L+++M E MY   G+GLAA QIG+  R+ V+
Sbjct: 1   MTYPIVKLGDPVLERPAAAVTEFDDGLKKLVEDMFESMYDAHGVGLAAPQIGIGKRIAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+II      +  +  CLSIPD+R  V R+  +TV+  D   + 
Sbjct: 61  DVTFKEDPNAKLVLINPEIILTDGRQTSQEG-CLSIPDFREKVTRARRVTVKAQDLTGKW 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                + LLA    HE DHLNG L+I H+S LKRD+I +K+ KL++  +
Sbjct: 120 FEHTGEDLLARAFLHETDHLNGKLYISHVSALKRDLIKRKVKKLIKAGE 168


>gi|91791393|ref|YP_561044.1| peptide deformylase [Shewanella denitrificans OS217]
 gi|91713395|gb|ABE53321.1| peptide deformylase [Shewanella denitrificans OS217]
          Length = 170

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR ++ P+      +   ID+M+E MY+  GIGLAA Q+    +L+V
Sbjct: 1   MPLLNVLRFPDERLRTIAVPVTDFGPQLQAQIDSMIETMYAEKGIGLAASQVDFHQQLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQD   R           I         +EGCLS+P   A V R+ F+T++ +D + +
Sbjct: 61  MDLQDDIERPK---IFINPEIVAKSGEFSNEEGCLSVPGVYAKVDRAEFVTLKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + AD L A C+QHE+DHL G LF+D+LS LKR  I  K+ K  +L
Sbjct: 118 PFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKTKLEKEARL 165


>gi|88855001|ref|ZP_01129666.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
 gi|88815529|gb|EAR25386.1| polypeptide deformylase [marine actinobacterium PHSC20C1]
          Length = 205

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++I  DP+L   + P+   +S +  L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 19  MAVLPIIITGDPVLHTPANPVTAFDSSLNTLVSDMFETMEEAPGVGLAAPQVGVPLRVFV 78

Query: 61  IDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            D  D        V INP          +     +EGCLSIP  R  + R+  + +R +D
Sbjct: 79  YDWIDDDDAHWRGVAINPELWHTPTPVYEPGEADEEGCLSIPGERFGLVRAERVILRAVD 138

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
            + +   I A G LA   QHE DHL+G+L+ D L
Sbjct: 139 LDQKPFEIEASGWLARIFQHEYDHLDGVLYADRL 172


>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
 gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
 gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
           NRL30031/H210]
 gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
 gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
          Length = 167

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+EKI+  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKPVEKIDERIQTLVADMFETMYEARGIGLAATQVDVHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++HLS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVEHLSQLKQGRIKTKLKKRQK 164


>gi|295096931|emb|CBK86021.1| peptide deformylase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 169

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D +  
Sbjct: 61  IDVSENRD---ERLVLINPEMLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|254467786|ref|ZP_05081192.1| peptide deformylase [beta proteobacterium KB13]
 gi|207086596|gb|EDZ63879.1| peptide deformylase [beta proteobacterium KB13]
          Length = 166

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP L +++  +E  +     L+ +M E MY + GIGLAA Q+ V  R++V
Sbjct: 1   MALLKILKYPDPRLHKIAEIVEVFDESTEKLVQDMAETMYESKGIGLAATQVDVHRRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D          +    +   D    Y EGCLS+P +   VKR   IT+ Y D    
Sbjct: 61  IDISDDKKDLL---VLINPKLIKFDGQQEYDEGCLSVPGFFETVKRYENITISYQDLKGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            + + ADGLL+ C+QHE+DHL G +FI++LS+LK+  I KK+SKL +
Sbjct: 118 IKTLEADGLLSVCIQHEMDHLVGKVFIEYLSQLKQQRIKKKISKLSR 164


>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
 gi|167012063|sp|A4WF95|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
          Length = 169

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 106/169 (62%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRIVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +
Sbjct: 61  IDVSENRE---ERLVLINPELLEQSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + AD LLA C+QHE+DHL G LFID+LS LK+  I +K+ KL ++R
Sbjct: 118 SFELEADDLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRMR 166


>gi|213965139|ref|ZP_03393337.1| peptide deformylase [Corynebacterium amycolatum SK46]
 gi|213952253|gb|EEB63637.1| peptide deformylase [Corynebacterium amycolatum SK46]
          Length = 193

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++P+ +  S++  LI++M E M    G+GLAA Q+GV  RL V
Sbjct: 1   MTIRPIVIAGDPVLHTPTQPVTEDVSELRELIEDMYETMDRAHGVGLAANQVGVGKRLFV 60

Query: 61  IDLQDHA------HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            +  D           NP++  +    T  +D     EGCLS+P       R+    V  
Sbjct: 61  YNCPDDDDVWHRGCVINPVLTTSEIPKTMPNDDGSDDEGCLSVPGLSFPTNRAEKAVVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N +   I A G  A C+QHE+ HL+G L+ D L+   + M  K++ +
Sbjct: 121 LDENGEEVRIEATGFFARCMQHEVGHLDGFLYTDCLTGRWKRMAKKEIKR 170


>gi|262040754|ref|ZP_06013985.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041898|gb|EEW42938.1| peptide deformylase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 169

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/169 (39%), Positives = 109/169 (64%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  LR+V+ P++++N++I  ++D+M + MY+ +GIGLAA Q+ +  R++V
Sbjct: 1   MAVLQVLHIPDERLRKVAEPVKEVNAEIQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ ++       + +    +   D  +  +EGCLSIP+ RA V R+  + +R +D N +
Sbjct: 61  IDVSENRE---EQLVLINPEMLEKDGETGIEEGCLSIPEQRALVPRAEKVKIRALDRNDK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + ADGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +LR
Sbjct: 118 PFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLR 166


>gi|255325949|ref|ZP_05367039.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
 gi|255296964|gb|EET76291.1| peptide deformylase [Rothia mucilaginosa ATCC 25296]
          Length = 201

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +                GCLS+P  ++   R  +  V  +D   +
Sbjct: 61  FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRRGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 158


>gi|328952875|ref|YP_004370209.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453199|gb|AEB09028.1| Peptide deformylase [Desulfobacca acetoxidans DSM 11109]
          Length = 167

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 1/158 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+ +L+  + P+ +I  DI  LID+M   MY+  GIGLAA Q+G L R+++
Sbjct: 1   MAILEIQTYPESVLKEKALPVTEITEDIQRLIDDMAATMYNAPGIGLAANQVGALQRVII 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+      +   V INP+II         +  CLS+ DY ADV+R A +    +D N +
Sbjct: 61  FDITPKNEGRKLNVLINPEIIAAEGAQVYQEA-CLSVLDYAADVRRKARVLATGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I A+ LLA  LQHE+DHL+GILFID +SRLKR++ 
Sbjct: 120 EVRIEAEDLLAVVLQHEIDHLDGILFIDRISRLKRNLY 157


>gi|330466981|ref|YP_004404724.1| peptide deformylase [Verrucosispora maris AB-18-032]
 gi|328809952|gb|AEB44124.1| peptide deformylase [Verrucosispora maris AB-18-032]
          Length = 186

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  LI ++ + M  + G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLIADLTDTMRDSAGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VVGHLVNPVLEFPDAEEQDGPEGCLSIPGMYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LFID L    R    K + 
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFIDRLDPAGRKEAMKAIR 158


>gi|222099700|ref|YP_002534268.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
 gi|254767608|sp|B9K7G9|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 5/162 (3%)

Query: 6   LVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65
           + +F DP+LR+ ++P+ K +  +   I+ M+E MY  DG+GLAA Q+G+  R  V+D   
Sbjct: 4   VRVFGDPVLRKRAKPVTKFDEALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMD--- 60

Query: 66  HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIY 125
                 P+  INP+I+  S +  + +EGCLS P+   +++RS  + VRY +   +     
Sbjct: 61  --VGNGPVAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEFVEEE 118

Query: 126 ADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +G  A   QHE DHLNG+L ID +   KR ++ K++  + +
Sbjct: 119 LEGYPARVFQHEFDHLNGVLIIDRIKPAKRLLLRKRLMDIAK 160


>gi|239932667|ref|ZP_04689620.1| polypeptide deformylase [Streptomyces ghanaensis ATCC 14672]
 gi|291441025|ref|ZP_06580415.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
 gi|291343920|gb|EFE70876.1| peptide deformylase 2 [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 81/168 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+LR   R +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 13  VRPLTLLGDPVLRAPCREVTDFGPELARLVEDLFATMYAARGVGLAANQIGEPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 73  CPDDEDVRHLGHVVNPRLVETDGVVVRGPEGCLSLPGLEAGTERHDHAVVEGFTVTGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            ++  G  A CLQHE DHL G L+ D L+  +   + +++ +    R+
Sbjct: 133 TVHGTGFFARCLQHECDHLEGRLYADRLTGWRHRRLMRQVKRASWNRE 180


>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
 gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
          Length = 177

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
              P+++ PD  LR  +RP+   +++ +  L   ML  MY   GIGLAA QIG L RLVV
Sbjct: 5   SLLPILLVPDARLRAKARPVGPGDTETVRALAPRMLATMYKAPGIGLAAPQIGELLRLVV 64

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DLQ     + P V INP+I+  S + S  +EGCLS+P+  A+V R A I VR++D    
Sbjct: 65  VDLQPDEKPE-PYVMINPEIVAASTELSSREEGCLSLPNQYAEVTRPAEIKVRWLDLEGA 123

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + ADGLLATC+QHE+DHLNG+LF+DHLS LKR+M+ +K++K ++ +
Sbjct: 124 KREMQADGLLATCIQHEIDHLNGVLFVDHLSALKRNMLLRKLAKELKAQ 172


>gi|119716668|ref|YP_923633.1| peptide deformylase [Nocardioides sp. JS614]
 gi|119537329|gb|ABL81946.1| peptide deformylase [Nocardioides sp. JS614]
          Length = 181

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRKPAIEVVDFDKELRRLVADLTDTMMDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                    SD+     EGCLSIP    D +R+     R  +    
Sbjct: 61  WYVDGEPGHLVNPQL------DLSDELQDGPEGCLSIPGLSVDCQRAMAAVARGFNMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I    LLA  LQHE DHL+G+LFID L    R    K + +
Sbjct: 115 PVTIEGTELLARALQHETDHLDGVLFIDRLDTEARKAAMKAIRE 158


>gi|329849466|ref|ZP_08264312.1| peptide deformylase [Asticcacaulis biprosthecum C19]
 gi|328841377|gb|EGF90947.1| peptide deformylase [Asticcacaulis biprosthecum C19]
          Length = 177

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 8/175 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++  P P+L++VS+P++K++ D+  L+D+MLE MY   GIGLAAVQIG   R++V
Sbjct: 1   MAIREILTVPHPVLKQVSKPVDKVDDDLRRLMDDMLETMYDAPGIGLAAVQIGEPIRVIV 60

Query: 61  IDLQDHAH--------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +DLQ+            K P  F+NP+II  S++ + Y+EGCLS+P+   +V R + + +
Sbjct: 61  MDLQEKPEGAEPDAEGVKKPRYFVNPEIIWRSEEVAPYEEGCLSVPEIYDEVLRPSKVKL 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +Y+D N       ADGL A C+QHE+DHL G LFIDHLS+LKRD    K+ KL +
Sbjct: 121 KYLDYNGNAVEEDADGLFAVCIQHEMDHLEGTLFIDHLSKLKRDRAITKVKKLTR 175


>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
 gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
          Length = 170

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/166 (39%), Positives = 97/166 (58%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K  ++ +P+  L+ V   +E++  ++  +IDNM+E MY  DG+GLAA Q+GV  RL+VI
Sbjct: 1   MKLDILAYPEESLKEVCSRVEEVTPELKEIIDNMIETMYEDDGVGLAAPQVGVQKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D      R +  V INP+I+  S      +E CLS P ++  +KR   +TV   D     
Sbjct: 61  DPSGPKERTDLQVIINPEIVEKSSQKVDSEEACLSCPGFKCVIKRHETVTVTGTDPEGND 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I AD  LA  LQHE+DHL+G L +D + RLKR M  KK+ K ++
Sbjct: 121 VRIEADDFLAIVLQHEIDHLDGTLIVDRVGRLKRAMYDKKVKKWLK 166


>gi|118578953|ref|YP_900203.1| peptide deformylase [Pelobacter propionicus DSM 2379]
 gi|118501663|gb|ABK98145.1| peptide deformylase [Pelobacter propionicus DSM 2379]
          Length = 172

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+P L++ S  +  I  +I  L+ +M E MY   G+GLAA QIGV  R+++I
Sbjct: 1   MIRTILTYPNPELKKKSAAVTIITDEIRELVSDMTETMYHAPGVGLAAPQIGVHQRVIII 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+       N ++     +I  ++  S  +EGCLS+P Y A+V+R A +TVR +D   + 
Sbjct: 61  DVS-AHDEPNELIIAINPVIVHAEGESYEEEGCLSVPKYAANVRRHASVTVRGLDLEGRE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
           Q  +A+GLLA   QHE+DHL+G LF+DHLS LKRD+  
Sbjct: 120 QTWHAEGLLAIAFQHEIDHLDGRLFVDHLSPLKRDLFQ 157


>gi|331697237|ref|YP_004333476.1| peptide deformylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951926|gb|AEA25623.1| Peptide deformylase [Pseudonocardia dioxanivorans CB1190]
          Length = 182

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  +  +   ++++  L+ ++ + M+   G GLAA QIGV  R+  
Sbjct: 1   MSVQPVRLFGDPVLRTPAVEVTTFDAELRKLVADLTDTMHDEGGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+   A        +NP      D+     EGCLSIP  R D  R   +  R  + + +
Sbjct: 61  YDVDGFAG-----HLVNPTFDVVGDEEQTGPEGCLSIPGLRWDCTRHLHVVARGWNVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +    LLA C+QHE DHL+G+LF+D L    R +   ++ 
Sbjct: 116 PVTVEGSELLARCIQHETDHLDGVLFVDRLDAETRKLAMAEIR 158


>gi|283457827|ref|YP_003362425.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
 gi|283133840|dbj|BAI64605.1| N-formylmethionyl-tRNA deformylase [Rothia mucilaginosa DY-18]
          Length = 214

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR V  PI   + D+  LID+MLE MY   G+GLA  Q+G+  ++  
Sbjct: 17  MTILSIRTVGDPVLRSVCDPITVFDDDLARLIDDMLETMYDVGGVGLAGPQVGISKQIFT 76

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +                GCLS+P  ++   R  +  V  +D + +
Sbjct: 77  FGGIDDREGYIINPVLEVGEEDQEGGE-----GCLSVPGQKSATPRKNWARVTGVDRHGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 132 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRQRVMRALR 174


>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
 gi|39930829|sp|Q7NQ75|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
          Length = 167

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E  ++ +   ID+M E MY   GIGLAA Q+    RLVV
Sbjct: 1   MALLNILHYPDERLHTVAKPVEVFDAALQQQIDDMFETMYEAKGIGLAATQVDYHRRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +               I   D  +VY+EGCLS+P     V R+  + V+  D + +
Sbjct: 61  MDISEERD---ERRVFINPEIVEKDGETVYEEGCLSVPGIYDKVTRAERVKVKAQDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA C+QHELDHLNG++F++ LS++K+  I  K+ K  + 
Sbjct: 118 PFELEADGLLAICIQHELDHLNGVVFVERLSQMKQQRIKTKLKKREKQ 165


>gi|284032219|ref|YP_003382150.1| peptide deformylase [Kribbella flavida DSM 17836]
 gi|283811512|gb|ADB33351.1| peptide deformylase [Kribbella flavida DSM 17836]
          Length = 182

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+L   + P+   ++++  L+ ++ + M +  G GLAA QIGV  R+  
Sbjct: 1   MSVQPIRLFGDPVLTTKADPVVDFDAELRRLVADLTDTMQAAPGSGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                  T S +     EGCLSIP    D +R+  +  +       
Sbjct: 61  YHVDGELGHLINPEL------TLSAEQQFGPEGCLSIPGLTFDCRRAERVIAKGFTMYGD 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +I    LLA C+QHE DHL+G+LF+D L    R    K + +
Sbjct: 115 PVVIEGSDLLARCIQHETDHLDGVLFVDRLDTATRKAAMKAIRE 158


>gi|255020222|ref|ZP_05292291.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970364|gb|EET27857.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 168

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +PD  L++ + PI +I+ DI  L D+M E MY+  GIGLAA+Q+    RL+V
Sbjct: 1   MALLKIVEYPDVRLKQEAAPIARIDRDIEALADDMAETMYAAPGIGLAAIQVAAPQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  +N ++ +    I  S      QEGCLS+P     V+R+  + VR +D   +
Sbjct: 61  V---DVSEARNELLTLVNPEIIESSGEEEMQEGCLSVPGVLETVRRAERVKVRALDLRGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA CLQHE+DHLNG LF+DHLSRLK+++I +K  K ++
Sbjct: 118 TLELEADGLLAVCLQHEIDHLNGTLFVDHLSRLKQNLIRRKAEKRLR 164


>gi|91205375|ref|YP_537730.1| peptide deformylase [Rickettsia bellii RML369-C]
 gi|91068919|gb|ABE04641.1| Polypeptide deformylase [Rickettsia bellii RML369-C]
          Length = 175

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAHRKNPMVFIN-----PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   K P  F       P+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KRD+  +K+ KL + 
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRDIALRKLRKLKKN 173


>gi|328675276|gb|AEB27951.1| Peptide deformylase [Francisella cf. novicida 3523]
          Length = 172

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           V+           +  I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  VMYDNLEEQNPEIIT-IINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|238063927|ref|ZP_04608636.1| peptide deformylase [Micromonospora sp. ATCC 39149]
 gi|237885738|gb|EEP74566.1| peptide deformylase [Micromonospora sp. ATCC 39149]
          Length = 185

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRRLVADLTDTMREQNGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVVAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LF+D L    R    K + 
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFVDRLDPAGRKEAMKAIR 158


>gi|189184237|ref|YP_001938022.1| peptide deformylase [Orientia tsutsugamushi str. Ikeda]
 gi|238692021|sp|B3CTU1|DEF_ORITI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189181008|dbj|BAG40788.1| methionyl-tRNA deformylase [Orientia tsutsugamushi str. Ikeda]
          Length = 181

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/175 (37%), Positives = 102/175 (58%), Gaps = 9/175 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    L+  PDPIL++V+ P++ +N  I  L+D+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLITAPDPILKKVASPVDTVNDSIRQLMDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +         D   ++  K P+  +NP +   S+  +  +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIKEDNITNSEYKYPLFMVNPIVKAISNQTATAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           V Y+D   +   + A+G LA  +QHE+DHL+GIL +D+LS LK++     +SK+ 
Sbjct: 121 VTYLDYYNKLTTLNAEGWLARAIQHEVDHLDGILLVDYLSNLKKEAALNTLSKIK 175


>gi|157826975|ref|YP_001496039.1| peptide deformylase [Rickettsia bellii OSU 85-389]
 gi|157802279|gb|ABV79002.1| peptide deformylase [Rickettsia bellii OSU 85-389]
          Length = 175

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/173 (40%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S+ + ++N+ I   +D+M+E MY  DG GLAAVQ+GVL R++V
Sbjct: 1   MSILPIVTVPDERLKQKSQAVLEVNNQIRKFMDDMVETMYHEDGGGLAAVQVGVLKRIMV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH          P+  +NP+II  S++  +  EGC+S+P+ R ++ RS  I +RY+
Sbjct: 61  IDIKDHDPIKRPKDFYPLFIVNPEIIEKSEELVIANEGCISVPEQRYEIARSESIKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS +KR++  +K+ KL + 
Sbjct: 121 DYHNKPQELEANDWLARVIQHEYDHLEGKLMIDYLSSMKRNIALRKLRKLKKN 173


>gi|38233909|ref|NP_939676.1| peptide deformylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200170|emb|CAE49851.1| Putative peptide deformylase [Corynebacterium diphtheriae]
          Length = 169

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 1/164 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +F DP+L   S  +E  +S I NL+++MLE M +  G+GLAA Q+GV  R+  
Sbjct: 1   MAIRDIRLFGDPVLTTKSSDVEVFDSSIRNLVNDMLETMDAAGGVGLAANQVGVTKRVF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP      +D  +  EGCLSIPD + + +R   ++V   D +  
Sbjct: 60  VYDCSHIEDGLRGHIINPVWEPIGEDIQIGPEGCLSIPDVQEETERWMTVSVSGRDVDGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A GL+A C+QHE DHL+G+LF+  L ++ R     ++ K
Sbjct: 120 PISLVASGLMARCIQHETDHLDGVLFLRKLDKVHRKDAMAQIRK 163


>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
 gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
          Length = 174

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/167 (32%), Positives = 95/167 (56%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P P+L++ +  ++ I+S+I+ L+ +M + MY+ +G+GLAA QIG   R++VI
Sbjct: 1   MVRSVLKYPHPLLKQPTLKVDVIDSEILKLVQDMWDTMYAEEGVGLAANQIGEPLRIMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D           + +    +  ++    Y+EGCLS P    +V R + +  R +D + + 
Sbjct: 61  DTTPKRESPPVKLVLINPQLIEAEGHITYREGCLSFPGLSVEVTRYSKVRFRALDLSGEE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +    +G  A   QHELDHLNGI FID LS L+R +  +K  KL + 
Sbjct: 121 KEYQLEGFPAIVFQHELDHLNGITFIDRLSGLRRRLALEKYGKLQRQ 167


>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
 gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
          Length = 183

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  + + +LR+V+ PI     ++  LIDNM + MY  +G+GLAA Q+G+  RL+VI
Sbjct: 1   MILPIYTYGNAVLRKVAEPINADYPELNTLIDNMFQTMYHAEGVGLAAPQVGLPIRLLVI 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D       D       +  INP+I+  S++     EGCLSIP     V R+  I + Y+D
Sbjct: 61  DLAPFKEDDPELGAFKITMINPEILERSEEEVSGDEGCLSIPGIHETVSRAQSIKITYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + +      +G  A  +QHE DHL G LF DH++ ++R ++  K++ +V+ +
Sbjct: 121 PDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDHVTPIRRQLLKSKLTNIVKGK 173


>gi|269956930|ref|YP_003326719.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305611|gb|ACZ31161.1| peptide deformylase [Xylanimonas cellulosilytica DSM 15894]
          Length = 164

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  + +L+ ++LE + +    GLAA QIGV  R   
Sbjct: 4   MAMREIRVIPDPVLRTPCDEITTIDDRVRSLVADLLETVDAEGRAGLAANQIGVNLRAFS 63

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D          +NP+I+   D+     EGCLS+P       R+A+  V  +D +  
Sbjct: 64  WNIDDEVG-----YVLNPRIVALGDELQDGDEGCLSVPGLWYPTTRAAYARVEGIDLDGN 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++   GL+A CLQHE DHL+G L++D L R  R    +++ +
Sbjct: 119 PVVVEGAGLMARCLQHECDHLDGKLYLDRLERSVRVRAMRELRE 162


>gi|320096237|ref|ZP_08027821.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976818|gb|EFW08577.1| peptide deformylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 163

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  P+ ++   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPVTEVTDSVRTLVEDLLEGVDMEGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLSIP+     KR+ +      D + +
Sbjct: 61  YNIDGQIG----YVLNPTIVELSEDEYQDGDEGCLSIPELWYPTKRAWYARCEGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE+DHLNG L+ID L R  R    + + 
Sbjct: 117 PVVLEGEELMARCIQHEVDHLNGHLYIDRLERKVRKKALRDIR 159


>gi|116670231|ref|YP_831164.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116610340|gb|ABK03064.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 197

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+ +   ++  L+ +M E M   DG GLAA Q+GV  R+  
Sbjct: 3   MAILNIRIIGDPVLRTVADPVTEFGPELAKLVADMTETMEDVDGAGLAAPQVGVSKRVFT 62

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R     V  +D +  
Sbjct: 63  YRI-----GGVEGHIINPVLENSEDFQPDEVEGCLSIPGLGFPVRRRRATRVTGVDLHGH 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +  +G+LA C QHE DHL+GILF D L    R    + +  
Sbjct: 118 PVTVDGEGMLARCFQHETDHLDGILFTDRLEGEDRKAALRSIRN 161


>gi|302381971|ref|YP_003817794.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192599|gb|ADL00171.1| peptide deformylase [Brevundimonas subvibrioides ATCC 15264]
          Length = 194

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 22/192 (11%)

Query: 1   MVKKPLVIFPD----PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++   +     IL++VS+P+  ++  +  L+D+ML+ MY   GIGLAAVQIG L 
Sbjct: 1   MAIRRILTIDNTADLAILKQVSKPVAVVDDAVRALMDDMLDTMYDAPGIGLAAVQIGELQ 60

Query: 57  RLVVIDLQDHAHR------------------KNPMVFINPKIITFSDDFSVYQEGCLSIP 98
           R+VV+DL D                       NP  F+NP++I  SD+   Y+EGCLSIP
Sbjct: 61  RVVVMDLGDGPAPEAAEAAAEDEEGSEETRVPNPRFFVNPEVIWASDETFCYEEGCLSIP 120

Query: 99  DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
           +Y   V+R A + V Y+D          +GL A C QHELDHLNG+LFIDHLSRL+RD  
Sbjct: 121 EYFDQVERPARVRVAYLDRTGARIEGEIEGLYAVCFQHELDHLNGVLFIDHLSRLRRDRA 180

Query: 159 TKKMSKLVQLRD 170
             K+ K ++LR+
Sbjct: 181 MSKVKKTMRLRE 192


>gi|311113846|ref|YP_003985068.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
 gi|310945340|gb|ADP41634.1| peptide deformylase [Rothia dentocariosa ATCC 17931]
          Length = 190

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR    PI   + ++  LID+ML+ MY  +G+GLA  QIG+  ++  
Sbjct: 1   MTILSIRTVGDPVLRSECEPITVFDRELAKLIDDMLDTMYDVEGVGLAGPQIGISKQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D          +               EGCLS+P  ++D  R  +  VR +D   +
Sbjct: 61  FGGIDGREGYIINPVLETGTEPQEGG-----EGCLSVPGIKSDTPRMNWARVRGVDKTGK 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  +GL A  LQHE DHL+G LFID L    R  + + + 
Sbjct: 116 PLVLEGEGLFARMLQHETDHLHGKLFIDRLVGEDRKRVMRTIR 158


>gi|297192182|ref|ZP_06909580.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197720173|gb|EDY64081.1| peptide deformylase 1 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 214

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TSRPITVVGNPVLHKECKDVTEFDDKLAALIDDMFASQKTAEGVGLAANQIGVDLKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +   + +        EGCLS+P   A + R  +  VR  D  
Sbjct: 98  DCPDDEGVRHTGVVCNPVLEELAPEQRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 158 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 203


>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 171

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 92/169 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V +P  +L++ +  +  I+ ++ +LI +M + MY+ +G+GLAA QIGV   ++VI
Sbjct: 1   MVREIVTYPAEVLKKPTLEVSDIDREVKSLIKDMFDTMYNAEGVGLAANQIGVPLSVMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D        +  + +    +  S+    Y+EGCLS P    +V+R+  + VR ++ + + 
Sbjct: 61  DTTPKEDVPDLKLVLINPEVIASEGKQKYKEGCLSFPGLSVEVERAKRVKVRALNEHGEP 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +  +   A   QHELDHL GI FID L   +R +  +K  KL +  +
Sbjct: 121 VEVVLEDFPAIVFQHELDHLKGITFIDRLKGWRRRLALEKYRKLQKEAE 169


>gi|304415447|ref|ZP_07396096.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
 gi|304282711|gb|EFL91225.1| peptide deformylase [Candidatus Regiella insecticola LSR1]
          Length = 200

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 106/173 (61%), Gaps = 6/173 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR++++P+EKI+++I  ++D+M + +Y+ +GIGLAA Q+ +  +++V
Sbjct: 24  MPILKILHFPDVQLRKIAKPVEKIDANIERIVDDMFDTIYAEEGIGLAATQVNIHKQIIV 83

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDD------FSVYQEGCLSIPDYRADVKRSAFITVRY 114
           I + D + +   +      ++  + +       +  +EGCLSIP  R  VKRS  + +R 
Sbjct: 84  IHIPDDSDQNERIEAHYRPLVLINPELLEESGETGIKEGCLSIPGVREWVKRSERVKIRA 143

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +D +     + ADGLLA C+QHE+DHL G LFID+LS LK   I KK+ K  Q
Sbjct: 144 LDRDGNSFTLEADGLLAICIQHEMDHLKGKLFIDYLSPLKFQRIQKKIRKKAQ 196


>gi|158421732|ref|YP_001523024.1| peptide deformylase [Azorhizobium caulinodans ORS 571]
 gi|158328621|dbj|BAF86106.1| polypeptide deformylase [Azorhizobium caulinodans ORS 571]
          Length = 165

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/167 (33%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV FPDP LR+ + P+   +  + +   ++L+ M +  GIG+     G++ RLV 
Sbjct: 1   MAVLDLVRFPDPRLRQPAEPVTVFDGALADRAQDLLDTMRAAPGIGITGPHAGLMIRLVA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +          P  ++NP+++  S +   + EG +S+P    +V+R A + V +   +  
Sbjct: 61  L----ELPETAPAFYVNPRVLRASPEMGRHPEGSVSMPGVVEEVERPARVRVAFQGLDGT 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLL+ CLQHE+D L+GI +I  LSRLKR+ + KK  KL++
Sbjct: 117 GHEVEADGLLSVCLQHEIDQLDGIFWIQRLSRLKRERVVKKYEKLLK 163


>gi|25029133|ref|NP_739187.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|259505872|ref|ZP_05748774.1| peptide deformylase [Corynebacterium efficiens YS-314]
 gi|39931150|sp|Q8FMD0|DEF2_COREF RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase [Corynebacterium efficiens YS-314]
 gi|259166546|gb|EEW51100.1| peptide deformylase [Corynebacterium efficiens YS-314]
          Length = 193

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   +R + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTREVTEPISELQELIADMYETMEVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            +  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  FNCPDDEGTMHRGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRADWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++ + +   +   G LA C QHE+ HL+G+++ D L    + +  K + 
Sbjct: 121 LNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTLIGRWKRLAKKTIK 169


>gi|154509144|ref|ZP_02044786.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798778|gb|EDN81198.1| hypothetical protein ACTODO_01665 [Actinomyces odontolyticus ATCC
           17982]
          Length = 163

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+P+     +R+ +      D + +
Sbjct: 61  WNIDGEIG----YVLNPRIVALSDDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  + L+A C+QHE DHL+G ++ID L R  R    + +  
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160


>gi|323359861|ref|YP_004226257.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
 gi|323276232|dbj|BAJ76377.1| N-formylmethionyl-tRNA deformylase [Microbacterium testaceum
           StLB037]
          Length = 188

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +  +++I  ++  L+ +M E M +  G+GLAA Q+GV  R+  
Sbjct: 1   MAVLPIRIMGDPVLHAPAARVDEITEEVRTLVADMFETMDAAPGVGLAAPQVGVGLRIFT 60

Query: 61  IDLQDHAHRKNP-----MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +D                   +     D     EGCLS P  R  ++RS    +  +
Sbjct: 61  YTYEDDEGLPWRGVVINPELWIRPLEPGYPDPDDESEGCLSFPGERFPLRRSDAALLTGV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           D + +   I   G  A  LQHE DHL+GIL++D L      ++ K   K  
Sbjct: 121 DLDGRPVRIEVTGWRARILQHEFDHLDGILYVDRLDDEDSRVVAKIAKKRK 171


>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
 gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
          Length = 275

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/169 (38%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + +DI  ++ NM   MY   GIGLAA Q+G+  +  +
Sbjct: 108 APLQILTPPHPVLRQKARLVKPEDVADIRKILPNMFSAMYQAPGIGLAAPQVGLS-QRFL 166

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +        ++P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 167 LVDLGEKDARDPIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNINGD 226

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 227 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 275


>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
 gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
          Length = 169

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 1/160 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+V +PDP+L   + P+  I   +  L  +ML+ MY   G GLAA Q+GVL R+ V
Sbjct: 1   MAVRPIVAWPDPVLSTPASPVIAITD-VAALAQDMLDTMYGAPGRGLAAPQVGVLQRVFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D       + P++ INP+I   SD      EGCLSIP     V+RS ++ + + D    
Sbjct: 60  MDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGCLSIPGVSLTVERSEWVDLEWSDLQGV 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
                 DG  A C+QHE DHL+GI+  D +S + R    K
Sbjct: 120 RHCRRFDGFDAICIQHEYDHLDGIVTFDRVSAVARAEAEK 159


>gi|298207815|ref|YP_003715994.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
 gi|83850453|gb|EAP88321.1| peptide deformylase [Croceibacter atlanticus HTCC2559]
          Length = 196

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + +P+L++ ++ I K    +  LI+NM E MY   G+GLAA Q+G+  RL VI
Sbjct: 1   MILPIVAYGNPVLKKKAKDITKDYPKLDELIENMWETMYGAHGVGLAAPQVGLPIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                       +FINP I   + D   + EGCLSIPD R DV R   
Sbjct: 61  DPSPFADDEELTEEERKQLTGLKKLFINPVITEETGDEWAFSEGCLSIPDVREDVFRQPD 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D N +       G+ A  +QHE DH+ GILF D LS LK+ +I  K++ + + +
Sbjct: 121 ITIEYVDENFKAHTETYTGIAARVIQHEYDHIEGILFTDKLSSLKKRLIKGKLNNISKGK 180


>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
 gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
          Length = 181

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRIQKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL ++             +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLSENRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQSRIKTKLKKRQK 178


>gi|308272079|emb|CBX28687.1| Peptide deformylase [uncultured Desulfobacterium sp.]
          Length = 177

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 103/170 (60%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L   ++P++ IN+D+  +ID+M+E MY   GIGLA++QIG    ++V
Sbjct: 7   MAILDILTYPDRFLTNTAKPVKGINADLQKIIDDMIETMYDAPGIGLASIQIGCDKSMIV 66

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+    H+++  V +NP II    +     EGCLS+PD R+DVKR+A + V  +D    
Sbjct: 67  YDIDQTEHKRSIQVLLNPVIIETDGEIVSNNEGCLSVPDLRSDVKRAASVIVEALDREGN 126

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              I A   LA  LQHE+DHLNG+LF+D +S LKR++  + + K  +  +
Sbjct: 127 PLKIEAHDQLAVVLQHEIDHLNGVLFLDRISTLKRELYKRHVKKQQKKNE 176


>gi|88811384|ref|ZP_01126639.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
 gi|88791273|gb|EAR22385.1| polypeptide deformylase [Nitrococcus mobilis Nb-231]
          Length = 177

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 96/151 (63%), Gaps = 3/151 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PDP LR  ++P+EK+  ++  L+D++ E MY   GIGLAA Q+ + +R++V
Sbjct: 1   MAILDILHYPDPQLRIRAQPVEKVTDEVRRLVDDLFETMYDAPGIGLAATQVNIHWRVLV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +   +  P+ FINP+I+    +  + +  CLS+P Y   V+R+ ++ V   D + +
Sbjct: 61  VDITE--AKNEPLAFINPQILERKGEEEMQEG-CLSVPGYFDTVRRAEWVKVHAQDRSGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLS 151
              +  DGLLA C+QHE+DHL G LF+D+LS
Sbjct: 118 PFELETDGLLAVCIQHEIDHLEGKLFVDYLS 148


>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
 gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
          Length = 170

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/168 (37%), Positives = 101/168 (60%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPD  LR  ++ ++++N+DI  ++D+M + MY  +GIGLAA Q+ +  R++V
Sbjct: 1   MSVLQVLHFPDERLRITAQSVKEVNADIQRIVDDMFDTMYEEEGIGLAATQVDIHQRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +   ++     +    +      +  +EGCLSIP+ RA V R+  + VR +D   +
Sbjct: 61  IDVSEERDQRL---VLINPELIEKSGETGIEEGCLSIPETRALVPRAEHVKVRALDREGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A  LLA C+QHE+DHL G LFID+LS LKR  I +K+ KL + 
Sbjct: 118 VFELEASELLAICIQHEMDHLVGKLFIDYLSPLKRQRIRQKLEKLAKQ 165


>gi|148272776|ref|YP_001222337.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830706|emb|CAN01646.1| putative polypeptide deformylase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 188

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + D+  L+ +M + M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPAREVEAFDDDLRTLVADMFDTMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +                    +     D    +EGCLS P  R  + R+    +R +
Sbjct: 61  YSYETDEGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   I A G  A  LQHE DHL+G+L+ D L+ + R  + K + K
Sbjct: 121 DLDGRPFEIQAAGWFARILQHEFDHLDGLLYTDRLAHVHRKPVAKVIRK 169


>gi|170781968|ref|YP_001710300.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156536|emb|CAQ01687.1| peptide deformylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 188

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R ++  + D+ +L+ +M E M    G+GLAA Q+GV  R+ V
Sbjct: 1   MAVLPIRITGDPVLHAPARDVQAFDDDLRSLVADMYETMDEAPGVGLAAPQVGVPLRVFV 60

Query: 61  IDLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              +                    +     D    +EGCLS P  R  + R+    +R +
Sbjct: 61  YSYETDDGEPLRGVAVNPDLFITPVAVREADEDTEEEGCLSFPGERFPLVRADRAILRAV 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   I A G  A  LQHE DHL+G+L+ D L+   R  + K + K
Sbjct: 121 DLDGRPYEIEAAGWFARILQHEYDHLDGLLYTDRLAHEHRKPVAKVIRK 169


>gi|300790374|ref|YP_003770665.1| polypeptide deformylase [Amycolatopsis mediterranei U32]
 gi|299799888|gb|ADJ50263.1| putative polypeptide deformylase [Amycolatopsis mediterranei U32]
          Length = 192

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L + +R I + +  +  L+D+M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTIHPIVIAGEPVLHQPTREITEFDEKLRTLVDDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVRHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D +     +   G  A CLQHE DHL+G +++D L   +     KKM K  +
Sbjct: 121 DIDGHPIEVEGTGYFARCLQHETDHLDGYIYLDRLVG-RHARAAKKMLKSNK 171


>gi|298504245|gb|ADI82968.1| polypeptide formylmethionine deformylase [Geobacter sulfurreducens
           KN400]
          Length = 167

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +  ++     +I   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 61  DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ + 
Sbjct: 120 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 166


>gi|209965357|ref|YP_002298272.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
 gi|209958823|gb|ACI99459.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
          Length = 186

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 8/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M    +     P+LRR ++P+E  I + +     +M+E M    GIGLAA Q+ V +R+V
Sbjct: 1   MAILKIARMGHPVLRRPAQPVETPIPAVVRQFALDMIETMVDAPGIGLAAPQVHVGWRIV 60

Query: 60  VIDLQDHAH-------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           V  +               P V +NP     S++     EGCLSIP  R  V R A I  
Sbjct: 61  VFRVPGDRATGGAGDLPMEPQVLVNPAYEPLSEEMVEGWEGCLSIPGLRGVVPRFARIRY 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           R +  +       A G  A  +QHE+DHL+GIL+ID +  L R   T++M 
Sbjct: 121 RGLSLDGTAVEREASGTHARVVQHEIDHLDGILYIDRMPDLTRLTFTEEMR 171


>gi|148285009|ref|YP_001249099.1| peptide deformylase [Orientia tsutsugamushi str. Boryong]
 gi|158514262|sp|A5CF65|DEF_ORITB RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146740448|emb|CAM80944.1| polypeptide deformylase [Orientia tsutsugamushi str. Boryong]
          Length = 181

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/175 (38%), Positives = 101/175 (57%), Gaps = 9/175 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    LV  PDPIL++VS P++ +N  I  LID+MLE MY   G+GLAA Q+ V  R++V
Sbjct: 1   MSILSLVTAPDPILKKVSSPVDTVNDSIRQLIDDMLETMYHNHGVGLAAPQVAVSKRIIV 60

Query: 61  I---------DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFIT 111
           +         D   ++  K P+  +NP +   S+     +EGCLS+P    +V R   I 
Sbjct: 61  LDLSKVDIEEDNITNSEYKYPLFMVNPIVKAISNQTVTAKEGCLSLPKQAIEVSRYHEIQ 120

Query: 112 VRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           V Y+D   + + + A G LA  +QHE+DHL+GIL +D+LS LK++     +SK+ 
Sbjct: 121 VTYLDYYNKLKTLNAAGWLARAIQHEVDHLDGILLVDYLSNLKKEATLNTLSKIK 175


>gi|282866652|ref|ZP_06275694.1| peptide deformylase [Streptomyces sp. ACTE]
 gi|282558554|gb|EFB64114.1| peptide deformylase [Streptomyces sp. ACTE]
          Length = 212

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECRTVTEFDDELGRLIDDMFASQRTAEGVGLAANQIGVDLKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSV---YQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 96  DCLDDDGVRHVGAVCNPVLEELAPERRNLDASNEGCLSVPTAYAELARPDYAVVRGQDAE 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M +
Sbjct: 156 GNDVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMEE 201


>gi|187922316|ref|YP_001893958.1| peptide deformylase [Burkholderia phytofirmans PsJN]
 gi|187713510|gb|ACD14734.1| peptide deformylase [Burkholderia phytofirmans PsJN]
          Length = 167

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/166 (38%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++ 
Sbjct: 1   MALLNILNYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+ Containing Form,
           Cocrystallized With Inhibitor Polyethylene Glycol (Peg)
 gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+ Containing Form
 gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+ Containing Form
 gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+ Containing Form
 gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+ Containing Form
 gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+ Containing Form
 gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+ Containing Form
 gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+ Containing Form In Complex
           With Tripeptide Met-Ala-Ser
 gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+ Containing Form (Native) In
           Complex With Inhibitor Polyethylene Glycol
 gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex From E.Coli
 gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex From E.Coli
 gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli Polypeptide Deformylase
           Complexed With The Inhibitor Bb-3497
 gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli Peptide Deformylase
           Complexed With Actinonin
 gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide Deformylase Complexed
           With Antibiotic Actinonin
 gi|62738424|pdb|1XEM|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Zinc- Peptide Deformylase Bound To Formate
 gi|62738425|pdb|1XEN|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
           Iron- Peptide Deformylase Bound To Formate
 gi|62738426|pdb|1XEO|A Chain A, High Resolution Crystals Structure Of Cobalt- Peptide
           Deformylase Bound To Formate
 gi|75766233|pdb|2AI8|A Chain A, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766234|pdb|2AI8|B Chain B, E.Coli Polypeptide Deformylase Complexed With Sb-485343
 gi|75766235|pdb|2AI8|C Chain C, E.Coli Polypeptide Deformylase Complexed With Sb-485343
          Length = 168

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 108/168 (64%), Gaps = 3/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 165


>gi|54025579|ref|YP_119821.1| peptide deformylase [Nocardia farcinica IFM 10152]
 gi|54017087|dbj|BAD58457.1| putative polypeptide deformylase [Nocardia farcinica IFM 10152]
          Length = 185

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DPILR  +  + + + ++  L+ ++ + M+   G+G+AA QIGV  R+ V
Sbjct: 1   MTIQPVRLFGDPILRARASEVTEFDRELRQLVTDLTDTMHDDGGVGMAAPQIGVGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D  D A        +NP      D+  V  EGCLSIP  R D +R+  + VR +D +  
Sbjct: 61  YDTGDAAG-----HLVNPTYTVVGDEEQVGPEGCLSIPGLRYDTRRALRVHVRGVDMHGA 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                AD LLA C+QHE DHL+G+LFID L    R    + + +
Sbjct: 116 PVEFDADELLARCVQHETDHLDGVLFIDRLDPAARKEAMRAIRE 159


>gi|89255517|ref|YP_512878.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115314036|ref|YP_762759.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|187930952|ref|YP_001890936.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457894|ref|ZP_03666367.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254366945|ref|ZP_04982982.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|290954254|ref|ZP_06558875.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143348|emb|CAJ78515.1| peptide deformylase [Francisella tularensis subsp. holarctica LVS]
 gi|115128935|gb|ABI82122.1| peptide deformylase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252772|gb|EBA51866.1| peptide deformylase [Francisella tularensis subsp. holarctica 257]
 gi|187711861|gb|ACD30158.1| peptide deformylase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|282159936|gb|ADA79327.1| peptide deformylase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 172

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           +       I   +   + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLEEQNPEIITI-INPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 120 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 168


>gi|320008651|gb|ADW03501.1| peptide deformylase [Streptomyces flavogriseus ATCC 33331]
          Length = 212

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 36  TSRPITVVGNPVLHKECSDVTEFGDELAQLIDDMFASQRTAEGVGLAANQIGVDRKVFVY 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +   + +     +    CLS+P   A + R  +  VR  D  
Sbjct: 96  DCPDDDGVRHVGAICNPVLEELAPERRNLDDSNEGCLSVPTAYASLARPDYAVVRGQDAQ 155

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    K+M++
Sbjct: 156 GNPVKVRGSGYFARCLQHETDHLYGYLYIDRLSKRDRKDALKQMAE 201


>gi|119963025|ref|YP_947573.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119949884|gb|ABM08795.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + I  DP+LR V+ P+     ++  L+ +M E M   +G GLAA Q+GV  R+  
Sbjct: 1   MAILSIRIIGDPVLRTVADPVTDFGPELAKLVADMTETMEDVEGAGLAAPQVGVSQRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +            INP +    D      EGCLSIP     V+R        +D N  
Sbjct: 61  YRI-----GGVEGHIINPVLENSEDYQPDEVEGCLSIPGLGFPVRRYRATRATGVDLNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              + A+G+LA C QHE DHL+G+L+ D L    R    + +  
Sbjct: 116 PVSVEAEGMLARCFQHETDHLDGVLYTDRLEGDDRKAALRAIRN 159


>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
 gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
          Length = 181

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  LI +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 184

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 92/167 (55%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L      I +I  +I  L  +M E MY  DGIGLAA Q+G   RL+V+
Sbjct: 1   MIREVLQYPDPRLAVECEDITEITDEIRQLAADMAETMYRQDGIGLAAPQVGEHCRLIVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     R+  M F+NP++    D     +        YRA V RS  + +   D +   
Sbjct: 61  DVSGPEKREALMTFVNPRLELTGDKVDSEEGCLSVPGGYRATVTRSDTVRLTARDLDGNE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL G LFIDH+SRLKR +   ++ K+ + 
Sbjct: 121 VCMDADGLLAVCLQHEVDHLKGTLFIDHISRLKRTLYDSRVKKMQKN 167


>gi|310778475|ref|YP_003966808.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
 gi|309747798|gb|ADO82460.1| peptide deformylase [Ilyobacter polytropus DSM 2926]
          Length = 170

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 4/169 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+ + P+E +N +I  +ID+M+E M+   G+GLAA QIGV  R+ VI
Sbjct: 1   MIYDIRTYGDPVLRKEALPVEDVNDEIREIIDSMVESMHEAGGVGLAAPQIGVSKRIFVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D++D   RK     INP+ + FS +   ++EGCLS+P     VKR A + ++Y + N + 
Sbjct: 61  DIEDGKIRK----VINPEFLEFSKEIVEHEEGCLSVPGVYKKVKRPARVKIKYTNENGEK 116

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
            I  A+GLL+   QHE DHL+  LF+D LS + + M++KK+  L +  +
Sbjct: 117 VIEEAEGLLSRAFQHEADHLDATLFVDKLSPVAKRMVSKKLQALKKETE 165


>gi|254295706|ref|ZP_04963163.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
 gi|157805961|gb|EDO83131.1| polypeptide deformylase [Burkholderia pseudomallei 406e]
          Length = 165

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 2/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              ++ +PD  L +V++P+ K++  I  L+ +M E MY+  GIGLAA Q+ V  R++VID
Sbjct: 1   MLNILHYPDKRLHKVAKPVAKVDDRIRKLVADMAETMYAAPGIGLAATQVDVHERVIVID 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           + +  +     VFINP+I+   D   VY+EGCLS+P    +V+R   + VR +D   +  
Sbjct: 61  VSEDKNELR--VFINPEIVWTGDGKQVYEEGCLSVPGVYDEVERPDRVRVRALDGQGEPF 118

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
            +  +GLLA C+QHE+DHL G +F+ +LS LK+  I  KM KL +
Sbjct: 119 ELDCEGLLAVCIQHEMDHLMGRVFVQYLSPLKQTRIKTKMKKLER 163


>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
 gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
          Length = 170

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ +  P+ ++N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEDHLKVICDPVTEVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TVR +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + AD LLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ + R+
Sbjct: 118 EFTLKADRLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKVKKQRE 167


>gi|315604523|ref|ZP_07879586.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313535|gb|EFU61589.1| peptide deformylase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 163

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I   +  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPSVKALVEDLLEGVDMEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+PD     KRS +      D + +
Sbjct: 61  WNIDGDIG----YVLNPRIVALSEDEYQDGDEGCLSVPDLWYPTKRSWYARCEGTDLDGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++  + L+A C+QHE DHL+G ++ID L R  R    + + 
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRPTRKKALRDIR 159


>gi|91781430|ref|YP_556636.1| peptide deformylase [Burkholderia xenovorans LB400]
 gi|91685384|gb|ABE28584.1| peptide deformylase [Burkholderia xenovorans LB400]
          Length = 167

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LTFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|257452629|ref|ZP_05617928.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
 gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+  +
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 60  CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMIAKKLQALKKE 166


>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
 gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
 gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
 gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 181

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/167 (37%), Positives = 96/167 (57%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  I  L+ +M E MY + GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDERIRKLVADMFETMYESRGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEP---RVFINPVIVEKDGETTYEEGCLSVPGIYDAVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|302558503|ref|ZP_07310845.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302476121|gb|EFL39214.1| peptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 216

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHQECQDVTDFGEELQQLVADMFASQRTAEGVGLAANQIGVDKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVICNPELVELPAEKRRLDDSNEGCLSVPTAYMPLARPDYAEVTGRDEQ 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|256374580|ref|YP_003098240.1| peptide deformylase [Actinosynnema mirum DSM 43827]
 gi|255918883|gb|ACU34394.1| peptide deformylase [Actinosynnema mirum DSM 43827]
          Length = 195

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +RP+++ + ++  LI +M E M + +G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIAGDPVLHNPTRPVDEHDDELRALIADMYETMAAANGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF-----SDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    +     +NP + T        D     EGCLS P       R+++  V   
Sbjct: 61  YDCPDDEGVRRRGEVVNPVLQTSDVPLGMPDPDDDYEGCLSAPGESYPTGRASWAKVTGT 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N     +   G  A CLQHE DHL+G L++D L    +   +KKM K
Sbjct: 121 DGNGDPVEVEGTGFFARCLQHETDHLDGYLYLDRLVGRHK-RASKKMIK 168


>gi|198282168|ref|YP_002218489.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667290|ref|YP_002424533.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198246689|gb|ACH82282.1| peptide deformylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519503|gb|ACK80089.1| polypeptide deformylase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  PD  L+ V+RPI +++  I  L D+M E MY   GIGLAA Q+   +RL+V
Sbjct: 1   MPLLKILEIPDARLKDVARPIARVDKQIQQLADDMAETMYDAPGIGLAAPQVAAGHRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ ++ +       +    I         +EGCLS+P     V+R+  +TVR      +
Sbjct: 61  VDVSENRNDLL---TLLNPEIIARTGEEEMKEGCLSVPGVLETVRRAEKVTVRATTVQGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA CLQHE+DHL+G LFIDHLSRLK+ +I +K  K V+L D
Sbjct: 118 TVELEADGLLAVCLQHEIDHLDGTLFIDHLSRLKQSLIRRKAEKRVRLGD 167


>gi|254419890|ref|ZP_05033614.1| peptide deformylase [Brevundimonas sp. BAL3]
 gi|196186067|gb|EDX81043.1| peptide deformylase [Brevundimonas sp. BAL3]
          Length = 192

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 20/189 (10%)

Query: 1   MVKKPLVIFPDP----ILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLY 56
           M  + ++    P    IL++VS+P+  ++  +  L+D+MLE MY+  GIGLAAVQ+G L 
Sbjct: 1   MAIRRILTIDIPADLAILKQVSKPVAAVDDAVRALMDDMLETMYAAPGIGLAAVQVGALD 60

Query: 57  RLVVIDLQDHAHRKN----------------PMVFINPKIITFSDDFSVYQEGCLSIPDY 100
           R++V+DL D                      P  F NP+I+  SD+   Y+EGCLSIP+Y
Sbjct: 61  RVIVMDLGDRDGTICETEEEDTPEAAEARKNPRFFANPEILWTSDELYTYEEGCLSIPEY 120

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V+R A + +RY++ + Q     A+GL A C+QHE+DHLNG+LFIDHLSRLKRD    
Sbjct: 121 FDKVERPARVRIRYLNRDGQSVEEEAEGLYAVCIQHEMDHLNGVLFIDHLSRLKRDRAVT 180

Query: 161 KMSKLVQLR 169
           K+ K  + R
Sbjct: 181 KVKKAARDR 189


>gi|126348457|emb|CAJ90180.1| putative polypeptide deformylase [Streptomyces ambofaciens ATCC
           23877]
          Length = 240

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 78/162 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL I  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 52  VRPLRILGDPVLHAPCEEVTDFGPELAALVEDLFATMYAAHGVGLAANQIGEPVRVFVYD 111

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 112 CPDDEDERHLGHVVNPRLVETGGVVVRGAEGCLSLPGLEAGTERHDEAVVTGFTVTGEPV 171

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G +++D L+  +R  + ++ ++
Sbjct: 172 TVRGTGFFARCLQHECDHLEGGIYVDRLTGWRRRKVLRRAAR 213


>gi|296161362|ref|ZP_06844169.1| peptide deformylase [Burkholderia sp. Ch1-1]
 gi|295888348|gb|EFG68159.1| peptide deformylase [Burkholderia sp. Ch1-1]
          Length = 167

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/166 (39%), Positives = 105/166 (63%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L ++++P+E +N  I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 1   MALLNIINYPDKRLHKIAKPVEAVNDRIRRLVKDMAETMYAAPGVGLAATQVDVHERVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +    + FINP+II  SD+  + +EGCLS+P    +V+R+  + VR ++   +
Sbjct: 61  IDVSDDHNEL--LAFINPEIIWSSDERKLSEEGCLSVPGIYDNVERAEKVRVRALNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              +  +GLLA C+QHE+DHL G +F+++LS LK+  I  KM KL 
Sbjct: 119 TFEMDCEGLLAVCIQHEMDHLMGRVFVEYLSSLKQTRIKSKMKKLA 164


>gi|149278151|ref|ZP_01884289.1| peptide deformylase [Pedobacter sp. BAL39]
 gi|149230917|gb|EDM36298.1| peptide deformylase [Pedobacter sp. BAL39]
          Length = 184

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 98/168 (58%), Gaps = 1/168 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V  PIE+   ++  LI NM E MY+  G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVCAPIEQDYPELKQLISNMFETMYNAHGVGLAAPQIGLPIRLFVI 60

Query: 62  DL-QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           D   D        V+IN +I+  + +   + EGCLSIPD R DV R   I +RY D N +
Sbjct: 61  DTGGDEDEDGVKRVYINAEILEENGEPWAFNEGCLSIPDIREDVMRKPNIRIRYYDENWE 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                  G+LA  +QHE DH+ G LF + LS L++ M+  K+  + + 
Sbjct: 121 LHEKEVTGMLARVIQHEYDHIQGKLFTETLSLLRKRMLQSKLDAISKG 168


>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|238692833|sp|B1XSN2|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 171

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 108/168 (64%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDSRLHKVAKPVAQVDARIKKIVADMADTMYEAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +     VFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ +D + +
Sbjct: 61  IDVSDEQNELM--VFINPEIVWTSSETKSWREGCLSVPEFYDEVERPAEIRVKALDIDGK 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              I ADG LA CLQHELDHL G +F+++LS  KR  I++KM K  + 
Sbjct: 119 EFEIEADGSLAVCLQHELDHLQGKVFVEYLSIFKRTRISQKMKKRAKE 166


>gi|324997314|ref|ZP_08118426.1| peptide deformylase [Pseudonocardia sp. P1]
          Length = 193

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    + +  DP+L R +RP+E+++  I  L+D+M E M + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLRIRMVGDPVLHRPTRPVEQVDDGIRTLVDDMFETMAAANGVGLAANQVGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIIT------FSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D   R      +   ++          D    +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDEETRTMRRGLVVNPVLETSERPQVMPDPDDDEEGCLSVPGESYPTGRADWARVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            D + +   +   G  A CLQHE DHL+G L++D L   +     KKM K 
Sbjct: 121 TDLDGEPVDVEGRGFFARCLQHETDHLDGHLYLDRLMG-RNQKAAKKMLKQ 170


>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 186

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/169 (40%), Positives = 112/169 (66%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
               ++  P P+LR+ +R ++  + ++I  ++ NM   MY   GIGLAA Q+G+  R ++
Sbjct: 19  APLQILTPPHPVLRQKARLVKPEDVAEIRKILPNMFSAMYQAPGIGLAAPQVGLSQRFIL 78

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +   R  P+V INP++I  ++D +V +EGCLS+P+  A+V R   I VR+ + N  
Sbjct: 79  VDLGEKDARD-PIVMINPEVIAETEDMAVREEGCLSLPNQYAEVVRPEKIRVRWNNVNGD 137

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
                A+GLLATC+QHE+DHL G+LF+DHLS L+R+MI ++++K ++ +
Sbjct: 138 VVEREAEGLLATCIQHEIDHLEGVLFVDHLSALRRNMILRRLAKELKRK 186


>gi|184201105|ref|YP_001855312.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581335|dbj|BAG29806.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 189

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI   P+L R +  + + ++ +  L+ ++ E M ++ G+GLAA QIGV  R+  
Sbjct: 1   MSIRPIVISGHPVLHRPAARVTEFDAALRTLVADLHETMDASHGVGLAAPQIGVGLRIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
              ++          +NP +          D     EGCLS+P     +KR+ ++ +   
Sbjct: 61  YLYENEDGVPPRGTLVNPVLTTGKISEVVPDPDEESEGCLSVPGQAWPLKRADWVRIAGQ 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N       A+G  A  +QHE DHL+G L++D L+        K + +
Sbjct: 121 DENGDPVAFEANGWFARVMQHEYDHLDGKLYVDRLNPKWSRRARKAIRR 169


>gi|269794722|ref|YP_003314177.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
 gi|269096907|gb|ACZ21343.1| peptide deformylase [Sanguibacter keddieii DSM 10542]
          Length = 162

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + + PDP+LR     I  I+  +  L++++L+ +      GLAA QIGV  R   
Sbjct: 1   MAIREIRVVPDPVLRTPCDEITVIDDRVRGLVEDLLDTVNDDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D++    EGCLS+P+     +R+ +  V   D +  
Sbjct: 61  WNIDDEIG----YVLNPKIVELSEDEYQDGDEGCLSVPNLWYPTERAWYARVEGTDLDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    L+A CLQHE+DHL+G L++D L +  R    + + +
Sbjct: 117 KVVVEGTELMARCLQHEVDHLDGYLYLDRLDKAVRKKAMRALRE 160


>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
 gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
          Length = 168

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 5/171 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PD  LR+    +   +  +  L+D+MLE MY + +GIGLAA Q+G    ++
Sbjct: 1   MAILDILTIPDERLRQKCVDVTDFDK-VQTLVDDMLETMYATDNGIGLAAPQVGRKEAVL 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL     +  P V +NPKI+         +  CLSIP Y ADV+R   + V   D   
Sbjct: 60  VIDLSPDRDK--PTVLVNPKIVEKERRVVNQEG-CLSIPGYYADVERFEKVKVEAFDRQG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
               I ++  L+  +QHE+DHLNG++FID+LS L+R M  KK+ K +  R+
Sbjct: 117 NQTTIESEDFLSIVMQHEIDHLNGVIFIDYLSPLRRKMALKKVQKYISNRN 167


>gi|257466485|ref|ZP_05630796.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 173

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + DP+LR+V+  +E IN +I  ++ NMLE MY+TDG+GLAA Q+G+  R+  +
Sbjct: 1   MIYEIRKYGDPVLRKVAEKVEDINDEIREILSNMLETMYATDGVGLAAPQVGISLRMF-V 59

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
                         INP I   +++    +EGCLS+P     V R A I + Y +   + 
Sbjct: 60  CDVGTPEESQVKKIINPIITPLTEENISVEEGCLSVPGIYRKVDRIAKIKISYQNEMGEK 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                +G  A  +QHE DHL   LF+D +S + + MI KK+  L + 
Sbjct: 120 IEEILEGFPAIVVQHEYDHLEATLFVDRISPMAKRMIAKKLQALKKE 166


>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
 gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
          Length = 181

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++P+E+++  +  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 15  MALLNILQYPDERLHTVAKPVEQVDGRVRKLVADMFETMYEARGIGLAATQVDVHERVVV 74

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 75  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 131

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 132 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 178


>gi|269219486|ref|ZP_06163340.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211065|gb|EEZ77405.1| peptide deformylase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR    PI++I   +  L+++++E +      GLAA QIGV  R   
Sbjct: 1   MTFRPIRIVGDPVLRTPCSPIDEITPGVKALVEDLVENVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +++         +     +    D+F   +EGCLS+PD     KRS +      D + +
Sbjct: 61  WNIEGEIG----YILNPVIVELSDDEFQDGEEGCLSVPDLWFPTKRSLYARAEGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +++  +GL+  C+QHE+DHL+G L+ID L R  R    + +  L
Sbjct: 117 KKVVEGEGLMGRCIQHEVDHLDGHLYIDRLDRETRKKAMRAIRDL 161


>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
 gi|123755296|sp|Q31J84|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
          Length = 169

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V++PD  LR V +P+ ++  ++  LID M   MY   GIGLAA Q+ V  RL+V
Sbjct: 1   MDKLDIVLYPDEGLREVCKPVPEMTDELDKLIDEMFYTMYDAPGIGLAAPQVAVQQRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +  K+  + +    I  +     ++EGCLSIP   A V R + I VR MD + +
Sbjct: 61  V---DISETKDEPIALLNPEIIKTAGKITWEEGCLSIPGIYAKVDRPSDILVRGMDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                A+ LLA C+QHE+DHLNG LFIDHLS LKR    +K  K +
Sbjct: 118 TIEFEANELLAVCIQHEIDHLNGKLFIDHLSGLKRTRAIQKFKKEM 163


>gi|56708685|ref|YP_170581.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110671157|ref|YP_667714.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134302737|ref|YP_001122705.1| peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501451|ref|YP_001427516.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010290|ref|ZP_02275221.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368481|ref|ZP_04984498.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371316|ref|ZP_04987318.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875560|ref|ZP_05248270.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|295312318|ref|ZP_06803105.1| peptide deformylase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56605177|emb|CAG46308.1| peptide deformylase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321490|emb|CAL09691.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134050514|gb|ABO47585.1| Peptide deformylase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569556|gb|EDN35210.1| peptide deformylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252054|gb|ABU60560.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121375|gb|EDO65576.1| peptide deformylase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841559|gb|EET19995.1| peptide deformylase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 174

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           +  I    I   +   + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLEEQNPEIIT-IINPEIIEQNGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +   +  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 EEIEVEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|320355330|ref|YP_004196669.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
 gi|320123832|gb|ADW19378.1| peptide deformylase [Desulfobulbus propionicus DSM 2032]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ +P P+LR+ +  I   + ++  LI++M + MY+  G+GLAA QIGV  +LV+
Sbjct: 1   MAIREIITYPHPVLRQKAEKITVFDQELATLIEDMADTMYNAPGVGLAANQIGVARQLVL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D     + +N +V INP+ I+  +     +EGCLS+ +    VKR   I V  +D    
Sbjct: 61  VDRSTKDNERNYLVLINPE-ISAGEGSVTDEEGCLSVIECYDKVKRFKKIHVTALDREGN 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
                A+   A  +QHE+DHL G LFID LS 
Sbjct: 120 PLEFDAEDRFARIIQHEVDHLLGTLFIDRLSS 151


>gi|239982203|ref|ZP_04704727.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291454049|ref|ZP_06593439.1| polypeptide deformylase [Streptomyces albus J1074]
 gi|291356998|gb|EFE83900.1| polypeptide deformylase [Streptomyces albus J1074]
          Length = 218

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R ++ +   ++++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHRETKDVTVFDAELAQLVDDMFASQRAAEGVGLAANQIGVDKKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     +        EGCLS+P   A++ R  +  VR  D  
Sbjct: 102 DCPDDEGARHVGVVCNPVLDELPSERRVLDDSNEGCLSVPTAYAELARPDYAVVRGQDEK 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               ++   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 162 GNPIVVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 207


>gi|332168973|gb|AEE18228.1| peptide deformylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 196

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ ++ I         LI+NM + MY   G+GLAA QIG+  R+ ++
Sbjct: 1   MIIPIVAYGDPVLKKKAKDITPEYPKFSELIENMYDTMYEAHGVGLAAPQIGLPIRVFLV 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                        F+N +I+    +   + EGCLSIP    DV R   
Sbjct: 61  DTTPFAEDESYTPEEQEQLANFKKTFVNAEILEEEGEEWAFSEGCLSIPGINEDVFRKPK 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+RY D N +      DGL+A  +QHE DH+ G+LF D LS LK+ +I  K+  + + +
Sbjct: 121 VTIRYRDENFKEYTETYDGLIARVIQHEYDHIEGVLFTDKLSSLKKRLIKGKLVNISKGK 180


>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
 gi|123163813|sp|Q11X86|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 184

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 101/170 (59%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++V++ IEK + D++ +  +M E M +  G+GLAA Q+ +  R+ VI
Sbjct: 1   MIYPIVAYGDPVLKKVAQDIEKGSLDVVKMSADMFETMENAHGVGLAAPQVALNLRMFVI 60

Query: 62  D---LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D     D         FINP I     D   Y+EGCLSIP  RADV R A + +RY D +
Sbjct: 61  DTSVFDDEKITPVRKTFINPVIEEEWGDEWPYEEGCLSIPGVRADVYRPANLRIRYFDTD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  +   DG+ A  +QHE DH+ G+LF+DHLS +K+ ++  K++ + + 
Sbjct: 121 WKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLSSIKKRLLKGKLTNISKG 170


>gi|82701528|ref|YP_411094.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
 gi|82409593|gb|ABB73702.1| peptide deformylase [Nitrosospira multiformis ATCC 25196]
          Length = 191

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  ++ P+ ++  +I  L+ +M E MY+  G+GLAA Q+ V  R++V
Sbjct: 25  MALLKILQYPDERLHTIAAPVPEVTDEIRVLVQDMAETMYAAPGVGLAATQVDVHKRVIV 84

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D ++  + ++ +    IT  +  S Y+EGCLS+P     V R+A ITV  ++ + +
Sbjct: 85  I---DVSNTHDQLLVLINPEITTHEGESDYEEGCLSVPGIFGKVPRAAQITVEALNKDGE 141

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHE+DHL G +F+++ SR+K+  I  K  K  +
Sbjct: 142 RFTLDADGLLAVCIQHEMDHLLGRVFVEYWSRMKQSRIQAKFRKQRR 188


>gi|118496725|ref|YP_897775.1| peptide deformylase [Francisella tularensis subsp. novicida U112]
 gi|194324032|ref|ZP_03057807.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208780004|ref|ZP_03247347.1| peptide deformylase [Francisella novicida FTG]
 gi|118422631|gb|ABK89021.1| peptide deformylase [Francisella novicida U112]
 gi|194321929|gb|EDX19412.1| peptide deformylase [Francisella tularensis subsp. novicida FTE]
 gi|208744008|gb|EDZ90309.1| peptide deformylase [Francisella novicida FTG]
          Length = 174

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|239904668|ref|YP_002951406.1| peptide deformylase [Desulfovibrio magneticus RS-1]
 gi|239794531|dbj|BAH73520.1| peptide deformylase [Desulfovibrio magneticus RS-1]
          Length = 174

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 1/166 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P P+L + + P+ +I   I  L   M E MY+  GIGLAA Q+G   RL+VI
Sbjct: 1   MPLEILKYPHPVLAKKAEPVAEITDAIRELAAGMAEAMYANQGIGLAAPQVGASIRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           DL     R+  M  +NP +IT +      +EGCLS+  YR  V+R+A +TV  +D   Q 
Sbjct: 61  DLSGPDKREALMTLVNP-VITAASGEQEDEEGCLSVRSYRTKVRRAANVTVTALDLAGQP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I AD LLA CLQHE+DHL+G+LFID +SRLKR M  K++ +  Q
Sbjct: 120 LTIEADELLAVCLQHEVDHLDGVLFIDRISRLKRAMYDKRVKRWAQ 165


>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 175

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/163 (39%), Positives = 100/163 (61%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  FPD +LR  + P++ I+  I  L+DNM+E M++  G+GLAA Q+G+  RL+VI
Sbjct: 1   MILEVKTFPDKVLRIKAEPVDSIDESITELLDNMVETMHARSGVGLAAPQVGISKRLIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D     +    +  INP+II+   +  V +EGCLSIP     V+R+  +TV+ MD N + 
Sbjct: 61  DTSAGENEGMLLRVINPEIISAEGE-QVGEEGCLSIPGEYEPVRRAEKVTVKAMDENGKP 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             + A+G LA   QHE+DHL+G+LFID L   K+D + K + +
Sbjct: 120 YTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYKKDTLKKTIKR 162


>gi|19553932|ref|NP_601934.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391575|ref|YP_226977.1| peptide deformylase [Corynebacterium glutamicum ATCC 13032]
 gi|39931164|sp|Q8NM41|DEF2_CORGL RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase [Corynebacterium glutamicum ATCC
           13032]
 gi|41326917|emb|CAF20761.1| POLYPEPTIDE DEFORMYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 193

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K + 
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169


>gi|300774181|ref|ZP_07084049.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758992|gb|EFK55820.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 192

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ +  I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTIEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLPIRVFVI 60

Query: 62  D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|254460696|ref|ZP_05074112.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
 gi|206677285|gb|EDZ41772.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 166

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 88/166 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L+     +E I  +I  L+ +M E MY+  G GLAA Q+GV+ RL V
Sbjct: 1   MSVLPIITWPDVRLQTECAAVEAIGPEIEQLVGDMFETMYTAPGRGLAASQVGVMRRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D        NP+V INP I+  SD  S  +E CLSI    ADV R   I + Y   N +
Sbjct: 61  MDATWKEGDMNPLVCINPSIVPLSDARSTNEEACLSIVGVSADVSRPNEIELSYTGLNGK 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
                 +G  A C QHE+DHL+G +  DHL   +R  +  K  +++
Sbjct: 121 RVTAVIEGFAAVCAQHEMDHLDGRVIFDHLGAPERAALEAKYKEII 166


>gi|145296738|ref|YP_001139559.1| peptide deformylase [Corynebacterium glutamicum R]
 gi|140846658|dbj|BAF55657.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 193

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 6/169 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  DP+L   ++ + +  S++  LI +M E M   +G+GLAA QIGV  R+ V
Sbjct: 1   MTVRPIVIHGDPVLHNPTQLVTEDVSELQELIADMYETMDVANGVGLAANQIGVSKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVY------QEGCLSIPDYRADVKRSAFITVRY 114
            D  D     +   FINP + T     ++       +EGCLS+P       R+ +  V  
Sbjct: 61  YDCPDDEGVMHKGCFINPVLETSEIPETMPADDGSDEEGCLSVPGEGFPTGRAHWAKVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           ++   +   + A+G LA C QHE+ HL+G L+ D L    + M  K + 
Sbjct: 121 LNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTDVLIGRWKRMAKKAIK 169


>gi|325972108|ref|YP_004248299.1| peptide deformylase [Spirochaeta sp. Buddy]
 gi|324027346|gb|ADY14105.1| Peptide deformylase [Spirochaeta sp. Buddy]
          Length = 167

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 4/166 (2%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
              +    D +L    +P+ K +S +  L+D M E M   DG+GLAA Q+GV  RL VI 
Sbjct: 1   MLDIYTLGDEVLTEKCQPVTKFDSALRILVDAMFETMAEADGVGLAAPQVGVNSRLFVIH 60

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
           +Q   +R      INP+II  S +    +EGCLSIP    DV+R A +TV+  D   +  
Sbjct: 61  IQGSENRAY----INPQIIETSIETDTSEEGCLSIPGVWHDVQRPARVTVQAQDVEGKVF 116

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + A+GLLA  +QHE DHLNG+LFID L+  +R+ + K   K  +L
Sbjct: 117 TVKAEGLLARAIQHEYDHLNGVLFIDRLNDEEREKMVKAYEKRAKL 162


>gi|302866831|ref|YP_003835468.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315503246|ref|YP_004082133.1| peptide deformylase [Micromonospora sp. L5]
 gi|302569690|gb|ADL45892.1| peptide deformylase [Micromonospora aurantiaca ATCC 27029]
 gi|315409865|gb|ADU07982.1| peptide deformylase [Micromonospora sp. L5]
          Length = 186

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   ++++  LI ++ + M    G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDAELRKLIADLTDTMREQSGAGLAAPQLGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLSIP    D KR   +  +  +    
Sbjct: 61  FDVDD-----VLGHLVNPVLEFPDSEEQDGPEGCLSIPGLYFDTKRRQNVIAKGFNGYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A C+QHE DHL+G+LF+D L    R    K + 
Sbjct: 116 PLQIVGTGLMARCVQHETDHLDGVLFVDRLDAAGRKEAMKAIR 158


>gi|30249917|ref|NP_841987.1| formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
 gi|39931083|sp|Q82TC8|DEF2_NITEU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|30180954|emb|CAD85881.1| Formylmethionine deformylase [Nitrosomonas europaea ATCC 19718]
          Length = 185

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  I  +I  L+ NM E MY+  GIGLAA Q+ V  R++V
Sbjct: 18  MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ ++ +    I  S   +  QEGCLS+P     V R+  +TVR    + +
Sbjct: 78  I---DVSETRDELLVLINPEIIASSGNAETQEGCLSVPGIFDKVTRAEEVTVRATGIDGK 134

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  + +
Sbjct: 135 SFEMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183


>gi|159037484|ref|YP_001536737.1| peptide deformylase [Salinispora arenicola CNS-205]
 gi|157916319|gb|ABV97746.1| peptide deformylase [Salinispora arenicola CNS-205]
          Length = 186

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR  + P+   + ++  L+ ++ + M   +G GLAA Q+GV  R+  
Sbjct: 1   MTVQPIRLFGDPVLRTPADPVVDFDVELRKLVADLTDTMREQNGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D          +NP +     +     EGCLS+P    D KR   +  R  + +  
Sbjct: 61  FDVDD-----VIGHLVNPVLEFPDVEEQDGPEGCLSLPGLYFDTKRRQNVVARGFNGHGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
              I   GL+A C+QHE DHL+G+LFID L    R    K + +  
Sbjct: 116 PVQIVGTGLMARCVQHETDHLDGVLFIDRLDAAGRKEAMKAIRQAQ 161


>gi|307328554|ref|ZP_07607728.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
 gi|306885822|gb|EFN16834.1| peptide deformylase [Streptomyces violaceusniger Tu 4113]
          Length = 200

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ ++ +P+L +  R +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 24  TARPITVYGNPVLHKECRDVTVFDEELARLVDDMFASQRAAEGVGLAANQIGVDLKVFVY 83

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++     NP +     D        EGCLS+P    ++ R  +  VR  D +
Sbjct: 84  DCMDDEGVRHVGAVCNPVLEELPADRRVLDDSNEGCLSVPTAYMELARPDYAVVRGQDLD 143

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ D LS+  R  + K+M++
Sbjct: 144 GEPIAVRGTGYFARCLQHETDHLYGYLYTDRLSKRDRKDVLKQMAE 189


>gi|307565540|ref|ZP_07628020.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
 gi|307345699|gb|EFN91056.1| peptide deformylase [Prevotella amnii CRIS 21A-A]
          Length = 186

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+  +  P+LR++++ I +   ++  LI +M E   ++DG+GLAA Q+G   R+VVI
Sbjct: 1   MILPIYTYGQPVLRKIAQDIPESYPELQELIADMFETCSASDGVGLAAPQVGKPIRVVVI 60

Query: 62  D------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D                             +  V +EGCLS+P     V+R   + V+++
Sbjct: 61  DLDVVSDNFPEYKGFRHAFINGHITEVDDTETEVMEEGCLSLPGLHEKVERPKRVRVKWI 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D N +    +  G LA  +QHE DHL G +F D +S  ++ MI KKM  L+Q +
Sbjct: 121 DENMEEHHEWLSGFLARVVQHEFDHLEGKVFTDRVSPFRKQMIKKKMKALLQGK 174


>gi|254388984|ref|ZP_05004215.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443292|ref|ZP_08218026.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
 gi|197702702|gb|EDY48514.1| peptide deformylase [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +        EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 206


>gi|124007536|ref|ZP_01692241.1| peptide deformylase [Microscilla marina ATCC 23134]
 gi|123987019|gb|EAY26775.1| peptide deformylase [Microscilla marina ATCC 23134]
          Length = 183

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I    +D+  L++NM E MY   G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGDPVLKKKAEEIAP-GTDVSELVENMFETMYEAHGVGLAAPQIGKSLRLFVI 59

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    D A +   M FINP I+       V++EGCLSIPD R +V R   I ++Y D N 
Sbjct: 60  DPEPMDEALQNMKMTFINPVILEEEGTEWVFEEGCLSIPDIRENVSRQPKIRIKYFDLNW 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +      DG+ A  +QHE DH+ G+LF D+LS  K+ ++  +++K+ + 
Sbjct: 120 KEHEAEYDGMAARVIQHEYDHIEGVLFTDYLSGFKKRLLKSRLTKISKG 168


>gi|320162554|ref|YP_004175779.1| peptide deformylase [Anaerolinea thermophila UNI-1]
 gi|319996408|dbj|BAJ65179.1| peptide deformylase [Anaerolinea thermophila UNI-1]
          Length = 171

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 5/158 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LRR ++ +   + D+  LID+M+E M +  G+GLAA Q+GV  R++V
Sbjct: 1   MAVRTIVTVPDPVLRRKAKKVTTFDKDLQVLIDDMIETMRAAPGVGLAAPQVGVSQRVIV 60

Query: 61  I-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +     + +D    K     +NP+I+  S +     EGCLSIP    +V+R   I V+ +
Sbjct: 61  VEYGEGEEEDENVPKKLYAVVNPEIVEASPERVTGVEGCLSIPRMMGEVERHERIVVKGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
           +   +       G  A   QHE+DHL GIL+ D  + +
Sbjct: 121 NRYGKPVKYKLSGWTARIFQHEIDHLEGILYTDRATSV 158


>gi|21223589|ref|NP_629368.1| polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|256785300|ref|ZP_05523731.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|289769194|ref|ZP_06528572.1| polypeptide deformylase [Streptomyces lividans TK24]
 gi|23396574|sp|Q9K4A0|DEF4_STRCO RecName: Full=Peptide deformylase 4; Short=PDF 4; AltName:
           Full=Polypeptide deformylase 4
 gi|8546887|emb|CAB94606.1| putative polypeptide deformylase [Streptomyces coelicolor A3(2)]
 gi|289699393|gb|EFD66822.1| polypeptide deformylase [Streptomyces lividans TK24]
          Length = 216

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +    +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECEDVTDFGEEFQQLVADMFASQRTAEGVGLAANQIGVSKKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP+++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|329939688|ref|ZP_08288989.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
 gi|329301258|gb|EGG45153.1| polypeptide deformylase [Streptomyces griseoaurantiacus M045]
          Length = 216

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFDEELAKLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGVRHVGVVCNPKLVELPAERRRLDDNNEGCLSVPTAYVSLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPVRVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|39995240|ref|NP_951191.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
 gi|39982002|gb|AAR33464.1| polypeptide deformylase [Geobacter sulfurreducens PCA]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 101/167 (60%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP+L++ + P+  IN     L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 16  MVRTILTYPDPVLKKKAVPVTIINDATRELVRDMAETMYDAQGVGLAAPQIGVSQRVIVI 75

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+      +  ++     +I   +  S  +EGCLS+P Y A+V R   + V+ ++   + 
Sbjct: 76  DVS-QRDERPELIVCINPVIIHGEGESYEEEGCLSVPKYSANVHRHERVVVKSLNLEGEE 134

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            +  A+GLLA   QHE+DHL+G+LF+DHLS LK++M  KK  ++ + 
Sbjct: 135 VVHRAEGLLAIAFQHEIDHLDGVLFVDHLSALKKEMFKKKYRRMTEE 181


>gi|328884922|emb|CCA58161.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 210

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 34  TARPITVVGNPVLHKECKDVTEFDDSLAALIDDMFASQKAAEGVGLAANQIGVDLKVFVY 93

Query: 62  DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NP +              EGCLS+P   A++ R  +  V   D  
Sbjct: 94  DCPDDEGVRHTGVVVNPVLQELPAELRVLDESNEGCLSVPTAYAELARPDYAEVHGQDAQ 153

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 154 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 199


>gi|227539328|ref|ZP_03969377.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241010|gb|EEI91025.1| peptide deformylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 192

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 8/175 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+LR+ ++ I++   +I  LI NM + MY+  G+GLAA QIG+  R+ VI
Sbjct: 1   MKLPIVAYGDPVLRKKTQEIDEDYPEIKELIANMYDTMYAAHGVGLAAPQIGLAIRVFVI 60

Query: 62  D--------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           D         +D + +    VFINP I+  + +   + EGCLSIPD   +V R A + + 
Sbjct: 61  DASPFAEDDDEDKSLKDFKKVFINPIIVEETGEKWGFNEGCLSIPDINEEVFRPANVVIN 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Y+D N +   I   GL A  +QHE DHL G LF D L  LK+ M+  K+  + + 
Sbjct: 121 YLDENFEEHEIELSGLAARIVQHEYDHLEGKLFTDKLGPLKKAMLKGKLDAISKG 175


>gi|254375239|ref|ZP_04990719.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
 gi|151572957|gb|EDN38611.1| hypothetical protein FTDG_01430 [Francisella novicida GA99-3548]
          Length = 174

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+Q 
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQE 170


>gi|126463294|ref|YP_001044408.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104958|gb|ABN77636.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 167

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVAAPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +       NP+I+  S  F  ++EG  ++P   A V R   +TVR+++   + 
Sbjct: 61  DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVVSRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|258404153|ref|YP_003196895.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
 gi|257796380|gb|ACV67317.1| peptide deformylase [Desulfohalobium retbaense DSM 5692]
          Length = 167

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 1/167 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  +PDP+L R + P+ +I+ ++  L  +M+E MY+  GIGLAA Q+G  +RL+ +
Sbjct: 1   MTLSICTYPDPVLARRAEPVAEISEEVRQLASDMVETMYANQGIGLAAPQVGKSWRLITV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+    ++   +  +NP+I     +    +EGCLS+P++R+ V+R+A + V   D +   
Sbjct: 61  DISGPENQTELVTLVNPEIQWRDGETET-EEGCLSVPEFRSKVQRAAKVRVTGQDLDGNA 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA CLQHE+DHL G + +DH+SRLKR M TKK+SK  + 
Sbjct: 120 VDMEADGLLAVCLQHEIDHLEGTIILDHVSRLKRSMYTKKVSKWQKQ 166


>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
 gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
          Length = 196

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V F DP+LR+V++ I     ++  L++NM E MY+  G+GLAA Q+G+  RL +I
Sbjct: 1   MILPIVAFGDPVLRKVAKDITPDYPNLDTLLENMFETMYNAYGVGLAAPQVGLPIRLFMI 60

Query: 62  D------------LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D             Q         VFIN KII  + +  V+ EGCLSIPD R DV R   
Sbjct: 61  DATGFAEDEELDEEQRKQLEGMKKVFINAKIIERNGEPWVFNEGCLSIPDIREDVFRPES 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + YMD N +  +   DGL A  +QHE DH+ GILF D LS LKR ++  +++ + + R
Sbjct: 121 IKIEYMDENFEKHVEEYDGLAARVIQHEYDHIEGILFTDKLSALKRRLLKGRLTNISRGR 180


>gi|315224454|ref|ZP_07866281.1| peptide deformylase [Capnocytophaga ochracea F0287]
 gi|314945475|gb|EFS97497.1| peptide deformylase [Capnocytophaga ochracea F0287]
          Length = 196

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEDEQTFLKGFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 167

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/167 (36%), Positives = 93/167 (55%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  V++ + K++  I  L+ +M E MY   GIGLAA Q+ V  R+VV
Sbjct: 1   MALLNILQYPDERLHTVAKSVGKVDERIQKLVADMFETMYEARGIGLAATQVDVHERVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +              +I   D  + Y+EGCLS+P     V R+  + V  ++   +
Sbjct: 61  MDLTEDRSEPR---VFINPVIVEKDGETTYEEGCLSVPGIYDTVTRAERVKVEALNEKGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              + ADGLLA C+QHELDHL GI+F++ LS+LK+  I  K+ K  +
Sbjct: 118 KFTLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164


>gi|157830814|pdb|1DFF|A Chain A, Peptide Deformylase
          Length = 164

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VI
Sbjct: 1   SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+ ++       + +    +      +  +EGCLSIP+ RA V R+  + +R +D + + 
Sbjct: 61  DVSENRD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKP 117

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             + ADGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L
Sbjct: 118 FELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164


>gi|295134935|ref|YP_003585611.1| peptide deformylase [Zunongwangia profunda SM-A87]
 gi|294982950|gb|ADF53415.1| peptide deformylase [Zunongwangia profunda SM-A87]
          Length = 196

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ ++PI+K    +  LI NM + MY+  G+GLAA Q+GV  RL VI
Sbjct: 1   MILPIVAYGDPVLKKKAKPIDKDYPKLEELISNMWDTMYNAYGVGLAAPQVGVPIRLFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +    VFIN K+I  + D   + EGCLSIPD R D+ R   
Sbjct: 61  DAAPFAEDDDLTAEEKEYLKGFKRVFINAKVIEETGDEWAFSEGCLSIPDVREDIFRKPE 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y D N + +     GL A  +QHE DH  GILF + +S LK+ +I  ++ K+   +
Sbjct: 121 VTIEYQDQNFETKKETFTGLAARVVQHEYDHTEGILFTEKISSLKKRLINGRLKKISSGK 180


>gi|251797740|ref|YP_003012471.1| peptide deformylase [Paenibacillus sp. JDR-2]
 gi|247545366|gb|ACT02385.1| peptide deformylase [Paenibacillus sp. JDR-2]
          Length = 161

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 4/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR  ++ + K NS++  L+ +M E MY  DG+GLAA QIG+  R++V
Sbjct: 1   MAIRIIVKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D     + +      +I  ++   V  EGCLSIP+   DVKR   I +   D    
Sbjct: 61  VDIGDETGLISMV----NPVIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 117 PFTVEASGFLAVAFQHEIDHLNGILFTD 144


>gi|220912934|ref|YP_002488243.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
 gi|219859812|gb|ACL40154.1| peptide deformylase [Arthrobacter chlorophenolicus A6]
          Length = 190

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  R+ V
Sbjct: 1   MTVLPITIWGEPVLHRRASEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRIFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D    +EGCLS P  +  +KR+ +  V   
Sbjct: 61  YKYANDDDAPASGVVVNPVLTLSKISGAAPDPDEEEEGCLSFPGDQYPLKRAEWARVEGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHL 150
           D N Q     A G  A  +QHE DHL+G L+++ L
Sbjct: 121 DGNGQPVKFEATGWFARVIQHEYDHLDGKLYVNRL 155


>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
          Length = 205

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDI-MNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             P++I P   L+  +RP+   ++ +  +L+  M   MY   GIGLAA QI  L RL V+
Sbjct: 36  LLPILIAPHKTLKTRARPVTAGDASLIRDLVPRMFATMYKAPGIGLAAPQIDSLLRLAVV 95

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +  P+V INP II  S++ +  +EGCLS+P+  ADV R A I +RY D +   
Sbjct: 96  DVSPDDQKA-PLVLINPDIIARSEEMATREEGCLSLPNQYADVTRPARIKLRYEDLDGSR 154

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           + + AD LLATC+QHE+DHL+GILF+DHLS LKR+M+ ++++K  + 
Sbjct: 155 REMEADDLLATCIQHEIDHLDGILFVDHLSTLKRNMLMRRLAKEQRQ 201


>gi|294814920|ref|ZP_06773563.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327519|gb|EFG09162.1| putative polypeptide deformylase [Streptomyces clavuligerus ATCC
           27064]
          Length = 217

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +   + ++  L+D+M     + +G+GLAA QIGV  ++ V 
Sbjct: 41  TSRPITVVGNPVLHQECQDVTAFDEELARLVDDMFASQRTAEGVGLAANQIGVDRKVFVY 100

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++    +NP +     +        EGCLS+P   A++ R  +  V   D +
Sbjct: 101 DCPDDDGVRHVGHVVNPVLAELPPERRVLDDANEGCLSVPTAYAELARPDYAEVTGQDLH 160

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                +   G  A CLQHE DHL G L+ID LS+  R    ++M
Sbjct: 161 GNPIRVRGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQM 204


>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
 gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
          Length = 190

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 11/178 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DPILR+ +  IE+    +  LI+NM + MY ++G+GLAA QIG   R+ V+
Sbjct: 1   MVLPIIAYGDPILRKKTALIEQDYPHLTELIENMFDTMYDSNGVGLAAPQIGKSIRMFVV 60

Query: 62  DLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFI 110
           D +  A                 +FINPK I    D   + EGCLSIP+   DV R   I
Sbjct: 61  DCRPFAEDEDNDEEKETLENFKKIFINPKKIETFGDDWKFTEGCLSIPNIHEDVTRPDGI 120

Query: 111 TVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           T+ Y+D N         GL A  +QHE DHL+G LFID+LS  K+ +I+ K+  + + 
Sbjct: 121 TLTYLDENFVEHTESFTGLPARVIQHEYDHLDGKLFIDYLSSFKKKLISNKLKNISKG 178


>gi|77464454|ref|YP_353958.1| formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388872|gb|ABA80057.1| Formylmethionine deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 167

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  ++  +       NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSENRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGEI 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHLNG L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLNGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|317124743|ref|YP_004098855.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315588831|gb|ADU48128.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 181

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  K + +F DP+LR  +  +   + ++  L+ ++ + M    G GLAA QIGV  R+  
Sbjct: 1   MAIKDIRLFGDPVLRTPAAEVIDFDKELRVLVQDLQDTMLDAPGAGLAAPQIGVGLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             +                ++  SD+     EGCLSIP    + +R+  +  +  + + +
Sbjct: 61  YWVDGIVGHLV------NPLLALSDEEQEGPEGCLSIPGVTVETRRALSVVAKGQNMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++    LLA  +QHE DHL+GILF+D L    R    + + +
Sbjct: 115 PVVLEGTELLARAVQHETDHLDGILFVDRLDPAARKAAMRAIRE 158


>gi|302542647|ref|ZP_07294989.1| peptide deformylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302460265|gb|EFL23358.1| peptide deformylase [Streptomyces himastatinicus ATCC 53653]
          Length = 218

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + + + ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 42  TARPITVVGNPVLHKECQDVTEFDDELAALIDDMFASQRAAEGVGLAANQIGVDRKVFVY 101

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D        EGCLS+P    ++ R  +  VR  D  
Sbjct: 102 DCLDDEGVRHVGVVCNPVLEELPADRRVLDDSNEGCLSVPTAYCELARPDYAVVRGQDAE 161

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R  + ++M++
Sbjct: 162 GNPITVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDVLRQMAE 207


>gi|241667516|ref|ZP_04755094.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254876062|ref|ZP_05248772.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842083|gb|EET20497.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 172

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAQEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKVNRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|51473406|ref|YP_067163.1| peptide deformylase [Rickettsia typhi str. Wilmington]
 gi|81692314|sp|Q68XG1|DEF_RICTY RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|51459718|gb|AAU03681.1| PDF [Rickettsia typhi str. Wilmington]
          Length = 175

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 99/173 (57%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ +G GLAAVQ+GVL R++V
Sbjct: 1   MSIYSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNANGAGLAAVQVGVLQRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID++ H   + P  F    I+         +     EGC+S+P+ R +V R   + +RY+
Sbjct: 61  IDIKAHDPVERPKDFYPLFIVNPEIIEQSTELVTANEGCISLPEQRIEVMRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173


>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
 gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
          Length = 188

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 5/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P+V + DP+L++V+  IEK   ++  LI+NM E M + +G+GLAA QIG+  RL VI
Sbjct: 1   MKLPIVAYGDPVLKKVAVDIEKDYPELPALIENMFETMDNANGVGLAAPQIGLSIRLFVI 60

Query: 62  DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D    A           +FINP I   S     + EGCLSIPD R DV R   IT+ Y D
Sbjct: 61  DATPFADEDASLASFKKIFINPIITDESGKEWKFNEGCLSIPDIREDVSRKEQITISYFD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            N  H     +GL A  +QHE DH+ G LF D +S LK+ M+  K+  +V+ 
Sbjct: 121 ENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDRISPLKKAMLKGKLDAIVKG 172


>gi|58584374|ref|YP_197947.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|75508016|sp|Q5GTG9|DEF_WOLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|58418690|gb|AAW70705.1| N-formylmethionyl-tRNA deformylase [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 179

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/178 (43%), Positives = 109/178 (61%), Gaps = 8/178 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M K  +V+ PD  L   +  +  IN  I  L+++M E MY+ +G+GLAAVQIGVL R+ V
Sbjct: 1   MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFV 60

Query: 61  IDLQDHAHRKNP--------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           +D+Q    +  P           INP+I   SD+  + +EGCLSIP+   +++R  ++TV
Sbjct: 61  MDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTV 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           +Y D N + Q + A G LA C+QHELDHLNGIL+I HLS+LK DM  KK  K  +  +
Sbjct: 121 KYKDLNNKEQTLKASGWLARCIQHELDHLNGILYIRHLSKLKYDMAMKKAEKFKRHYE 178


>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
 gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
          Length = 282

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/164 (36%), Positives = 89/164 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILRR ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 90  LKIVEYPDPILRRKNKRIDTFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVFNP 149

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V INP++  +S     + EGCLS P   ADV R   + +   D N     
Sbjct: 150 VGERGEGEEIVLINPRLNKYSKKIVPFNEGCLSFPGIYADVLRPESVKIDARDINGARFT 209

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +   GL A   QHE DHL GILF D ++    D I  ++  L +
Sbjct: 210 VNLSGLPARVFQHEYDHLEGILFFDRMTDEVLDSIRAQLQALEK 253


>gi|260904911|ref|ZP_05913233.1| peptide deformylase [Brevibacterium linens BL2]
          Length = 200

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI+ +P+L + +  I   + ++  LI +M E + +++G+GLAA QIGV  R+ V
Sbjct: 10  MAIHPIVIYGEPVLHQRAEKITDFDEELATLIADMHETLDASNGVGLAAPQIGVGKRIFV 69

Query: 61  IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            + +D              ++          D     EGCLS+P     +KR+  +TV  
Sbjct: 70  FNAEDEEAGVRRRGTFINPLLIASKVPDTRPDPVEETEGCLSVPSLDFPLKRADRVTVNG 129

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
           +D   Q   + A+G  A  +QHE DHL G L++D L +      +KK  K  
Sbjct: 130 LDETGQSVSLTAEGWFARIMQHEYDHLQGTLYVDRLDK----RWSKKWKKEQ 177


>gi|256819049|ref|YP_003140328.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
 gi|256580632|gb|ACU91767.1| peptide deformylase [Capnocytophaga ochracea DSM 7271]
          Length = 196

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I      +  LI NM + M +  G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIAYGDPVLRKVGTEIPPDYPQLKTLIANMYDTMNAAYGVGLAAPQVGLSIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+  + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFADDDELSEEEQTFLKDFKKTFINAKIVEETGDTWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y D +   Q +   GL A  +QHE DH+ GILF D LS  KR +I  K++ + + +
Sbjct: 121 ITIEYFDEDFNKQTLTIGGLAARIIQHEYDHIEGILFTDKLSSFKRQLIKSKLANISKGK 180


>gi|224373737|ref|YP_002608109.1| peptide deformylase [Nautilia profundicola AmH]
 gi|254767597|sp|B9L6X1|DEF_NAUPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223589661|gb|ACM93397.1| peptide deformylase [Nautilia profundicola AmH]
          Length = 174

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 96/164 (58%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P+ +L+++S+P+E+ + D+  L+D+M E M   +G+GLAA+Q+ V  R ++
Sbjct: 1   MAVLDIVTYPNKVLKQISKPVERFDKDLHKLLDDMYETMIKNNGVGLAAIQVAVPIRALL 60

Query: 61  IDLQDHAHRKNPMVFINPKIITF--SDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+ D   +++    I      F   D      EGCLS+PDY  +V+R   + V++ D  
Sbjct: 61  IDIGDEEGKQSKDTLIEVINPEFLTWDGTQKDTEGCLSVPDYFDEVERYKNVKVKFFDRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
            +  ++ A+GLL+   QHE DHL+G LF++ L  +KR    K+ 
Sbjct: 121 GKEHVMEAEGLLSVAFQHETDHLDGHLFVERLDYIKRKKFEKEW 164


>gi|184200810|ref|YP_001855017.1| peptide deformylase [Kocuria rhizophila DC2201]
 gi|183581040|dbj|BAG29511.1| peptide deformylase [Kocuria rhizophila DC2201]
          Length = 249

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +    DP+LR  ++ + + +  +  L+ +M+E MY+  G+GLAA Q+GV  ++  
Sbjct: 1   MSILRIRTIGDPVLRTPAQEVPQFDESLRTLVRDMVETMYAVGGVGLAAPQVGVGLQIFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
             ++                ++   +     EGCLS+P    +  R    T+  +D + +
Sbjct: 61  WGIEGDEGHVV------NPRLSVGHEPQDGGEGCLSVPGLSYETPRMDSATLTGVDMHGR 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM---------SKLVQLRD 170
                A GLLA C QHE DHL G L++D L    R    +++          ++ + RD
Sbjct: 115 PVHRDATGLLARCFQHETDHLRGTLYVDRLEGEHRRDAMRQLRGEAFRATAERIARERD 173


>gi|293189859|ref|ZP_06608573.1| peptide deformylase [Actinomyces odontolyticus F0309]
 gi|292821274|gb|EFF80219.1| peptide deformylase [Actinomyces odontolyticus F0309]
          Length = 163

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 4/164 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ I  DP+LR V  PI +I  ++  L++++LE +      GLAA QIGV  R   
Sbjct: 1   MAIRPIRIIGDPVLRTVCDPITEITPNVKALVEDLLEGVDMDGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++          V     +    D++    EGCLS+P+     +R+ +      D +A+
Sbjct: 61  WNIDGEIG----YVLNPRIVALSEDEYQDGDEGCLSVPELWYPTERAWYARCEGTDLDAK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             ++  + L+A C+QHE DHL+G ++ID L R  R    + +  
Sbjct: 117 KVVVEGEELMARCIQHECDHLDGHIYIDRLDRATRKKALRDIRN 160


>gi|227488838|ref|ZP_03919154.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542166|ref|ZP_03972215.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091260|gb|EEI26572.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181995|gb|EEI62967.1| peptide deformylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 177

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 6/169 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + L +  DP+L   + P++++ +    L+ +MLE M S  G+GLAA Q+GVL R+ V 
Sbjct: 1   MIRKLRLMGDPVLVSEAEPVDEVTASTKTLVSDMLETMDSAGGVGLAANQVGVLQRVFVY 60

Query: 62  DLQDHAHRKNPMV------FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           D        NP         INP      ++  + QEGCLSIPD  AD +R   + V  +
Sbjct: 61  DCPVDDSDPNPDREYKRGAIINPVWEPVGEEMQLGQEGCLSIPDVYADTERYMNVHVTGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N  +    A GLLA C+QHE DHL+G+LFI  L++ +R    K++  
Sbjct: 121 DENGDNVDFEATGLLARCIQHETDHLDGVLFIKRLTKERRKEAMKEIRN 169


>gi|221640346|ref|YP_002526608.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161127|gb|ACM02107.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 167

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 2/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + +P V++PD  L+ V+ P+E +  +I  +  +M+E M +  G GLAA QIGV+ RL V+
Sbjct: 1   MIRPFVMYPDKRLKTVATPVEAVTDEIRAIWTDMIETMDAMPGYGLAAPQIGVMLRLAVV 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D  +   +       NP+I+  S  F  ++EG  ++P   A + R   +TVR+++   + 
Sbjct: 61  DCSESRGKAI--RLANPEILHASGQFREHEEGSPNLPGASAVISRPRAVTVRFLNEAGET 118

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           +      + AT +QH++DHL+G L+ID LS LKR M+  K  K ++
Sbjct: 119 EERDFVDIWATSVQHQIDHLDGRLYIDRLSPLKRKMVVAKSEKYLR 164


>gi|116670982|ref|YP_831915.1| peptide deformylase [Arthrobacter sp. FB24]
 gi|116611091|gb|ABK03815.1| peptide deformylase [Arthrobacter sp. FB24]
          Length = 190

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPITIWGEPVLHRRAAEVEVFDDELRTLIADMFETNDAANGVGLAAPQVGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D     EGCLS P  +  +KR+ +  V+  
Sbjct: 61  YKFANDDGVPPAGVVVNPVLTLSKVSGALPDPDEEVEGCLSFPGGQYPLKRAEWARVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           D +       A    A  +QHE DHL+G L+++ L     D   +K  K  +
Sbjct: 121 DGDGNPVDFEATEWFARIIQHEYDHLDGKLYVNRL----MDRYARKAMKQAK 168


>gi|29833668|ref|NP_828302.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931074|sp|Q826Q0|DEF2_STRAW RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 186

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 81/162 (50%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L+++M   MY+ +G+GLAA QIGV  R+ V D
Sbjct: 13  VRPLALLGDPVLHAPCEEVTDHGPELARLVEDMFATMYAANGVGLAANQIGVPLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP++I          EGCLS+P   A  +R     V     + +  
Sbjct: 73  CPDDEDVRHVGHVVNPRLIEADGVVLRGPEGCLSLPGLEAGTERYDRAVVEGFTTDGEPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL+G +++D +S  +   + ++ ++
Sbjct: 133 RVLGTGWFARCLQHECDHLDGGVYVDRVSGWRHRRVMRQAAR 174


>gi|328676180|gb|AEB27050.1| Peptide deformylase [Francisella cf. novicida Fx1]
          Length = 172

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 61  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATVVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 120 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 166


>gi|224585201|ref|YP_002639000.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469729|gb|ACN47559.1| peptide deformylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 164

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/162 (40%), Positives = 105/162 (64%), Gaps = 3/162 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D +     + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGNPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           DGLLA C+QHE+DHL G LFID+LS LK+  I +K+ KL +L
Sbjct: 119 DGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRL 160


>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
 gi|6225256|sp|Q9ZDV8|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii]
 gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii Rp22]
          Length = 175

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 103/173 (59%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L++ S+P+ +        + +MLE MY+ DG GLAAVQ+G+L R++V
Sbjct: 1   MSIFSIVTAPDERLKQKSKPVLECTDQTRKFMHDMLETMYNADGAGLAAVQVGILLRILV 60

Query: 61  IDLQDHAH-----RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           ID++++          P+  +NP+II  S +     EGC+S+P  R +V R   + +RY+
Sbjct: 61  IDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVTANEGCISLPKQRIEVTRPESVKIRYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L +D+LS LKRD++ +K+ KL   
Sbjct: 121 DYHGKSQELKANDWLARVIQHEYDHLEGKLMVDYLSNLKRDVVLRKLKKLKNN 173


>gi|167626939|ref|YP_001677439.1| peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596940|gb|ABZ86938.1| Peptide deformylase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 172

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPI--EKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P PIL+ +++ +  E+I+ D    I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 1   MSLEILKYPHPILKEIAKEVSLEEIDDDFRATIAEMTELMIEANGVGLAAIQVGIKKRFF 60

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++           ++ I    I       + +EGCLS P   A + R+  + ++ ++   
Sbjct: 61  IMYDNLE-SETPKIITIINPKIIDQSGKIIDEEGCLSFPGVSAKINRATRVKIKALNEFG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           Q   +  D  LA C+QHE+DHLNG+ F DHL  LKR MI KK  KL+Q 
Sbjct: 120 QEIEVEKDDFLARCIQHEIDHLNGVTFFDHLGPLKRKMIEKKYKKLMQE 168


>gi|255019795|ref|ZP_05291871.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
 gi|254970724|gb|EET28210.1| Peptide deformylase [Acidithiobacillus caldus ATCC 51756]
          Length = 171

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M   P++ +PDP L R + P+E+ + ++ + + ++ E MY+   G+G+AA Q+  L R+V
Sbjct: 1   MAVLPILTYPDPRLHRKAEPVEQFDEELRSFVADLTETMYAGPGGVGIAAPQVDRLQRIV 60

Query: 60  VIDLQDHAHRKNPMVFI-NPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++D++                 +   +  +V +EGC+S+PD+  +V R+  I V+  D +
Sbjct: 61  LVDVRPKLGDDCHGFLCLINPELIAWEGMAVGREGCMSVPDFTGNVIRAERIQVQAQDLD 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            + +I    G  A  +QHE+DHL+G LF+D L   K D+  +K  +  
Sbjct: 121 GRSRIFECAGFEARAVQHEMDHLDGFLFLDRLVSRKTDLFRRKRYQQK 168


>gi|134097125|ref|YP_001102786.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009658|ref|ZP_06567631.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909748|emb|CAL99860.1| putative polypeptide deformylase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 191

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  DP+L   +R +E  + ++  L+D+M E M +  G+GLAA QIGV  RL V
Sbjct: 1   MAVHPIRIVGDPVLHNPTRLVENFDDELRTLVDDMFETMAAASGVGLAANQIGVDLRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NP +          D     EGCLS+P       R+ +  V   
Sbjct: 61  YDCPDDEGVQHRGVVVNPVLETTEVPESMPDPEEDWEGCLSVPGESFPTGRADWAKVTGS 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D +     +   G  A CLQHE DHL+G L++  L         K + +
Sbjct: 121 DVDGNPVEVEGTGFFARCLQHETDHLDGFLYLSRLVGRHARAAKKTVKR 169


>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
 gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
          Length = 154

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 4/153 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR  ++ + +I   +  L+++M+E MY  +GIGLAA Q+G+  R++V
Sbjct: 1   MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+QD          +    I   +      EGCLS P    +V+R   +TVR  D +  
Sbjct: 61  IDVQDETGVLK----LINPEIISGEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGN 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
              I A GLLA   QHE+DHL+GILF+D ++RL
Sbjct: 117 TVEICASGLLARAFQHEIDHLDGILFVDKVTRL 149


>gi|158522244|ref|YP_001530114.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
 gi|238686886|sp|A8ZUK5|DEF_DESOH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|158511070|gb|ABW68037.1| peptide deformylase [Desulfococcus oleovorans Hxd3]
          Length = 173

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/168 (39%), Positives = 103/168 (61%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V +P  +L+  + P+  I+  +  LID+M + MY+  G+GLAAVQ+    RLV+
Sbjct: 1   MTVLDIVTYPADVLKDGALPVANIDGKLQQLIDDMAQTMYAHQGVGLAAVQVDSGLRLVI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D   ++   V INP+++    +    QEGCLS+P+ R DVKR+A + V  +D   +
Sbjct: 61  YDVSDQREKQQFRVVINPEVVAVDGECVSEQEGCLSVPELRTDVKRAATVRVEGVDREGR 120

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
             +I A+GL A  LQHE+DHLNG L +D  SRLKR++  +K+ K ++ 
Sbjct: 121 PLVIDAEGLEAIVLQHEIDHLNGTLILDRASRLKRELYKRKVQKRIKQ 168


>gi|294631322|ref|ZP_06709882.1| peptide deformylase [Streptomyces sp. e14]
 gi|292834655|gb|EFF93004.1| peptide deformylase [Streptomyces sp. e14]
          Length = 216

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  ASRPITVVGNPVLHKECKDVTEFGEELQQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCMDDEGVRHVGVVCNPKLVELPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDER 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNAIKVRGTGYFARCLQHETDHLYGQLYIDRLSKRERKDALRQMAE 205


>gi|237716076|ref|ZP_04546557.1| peptide deformylase [Bacteroides sp. D1]
 gi|237722139|ref|ZP_04552620.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262407688|ref|ZP_06084236.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|294643796|ref|ZP_06721594.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294808456|ref|ZP_06767209.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|298480836|ref|ZP_06999031.1| peptide deformylase [Bacteroides sp. D22]
 gi|229443723|gb|EEO49514.1| peptide deformylase [Bacteroides sp. D1]
 gi|229447949|gb|EEO53740.1| peptide deformylase(PDF) [Bacteroides sp. 2_2_4]
 gi|262354496|gb|EEZ03588.1| peptide deformylase [Bacteroides sp. 2_1_22]
 gi|292640885|gb|EFF59105.1| peptide deformylase [Bacteroides ovatus SD CC 2a]
 gi|294444384|gb|EFG13098.1| peptide deformylase [Bacteroides xylanisolvens SD CC 1b]
 gi|295085225|emb|CBK66748.1| peptide deformylase [Bacteroides xylanisolvens XB1A]
 gi|298272859|gb|EFI14425.1| peptide deformylase [Bacteroides sp. D22]
          Length = 184

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVNMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|152981418|ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
 gi|151281495|gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp.
           Marseille]
          Length = 178

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L RV+ P+++    ++  LI++M + M++ +G GLAA QIGV  RLV
Sbjct: 1   MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60

Query: 60  VIDL-----QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INPK+   S +     EGCLS+P  R  V R + +    
Sbjct: 61  IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
            D         ADG  A  +QHE DHL+GIL+   ++ L
Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDL 159


>gi|160883802|ref|ZP_02064805.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|260170792|ref|ZP_05757204.1| peptide deformylase [Bacteroides sp. D2]
 gi|293372830|ref|ZP_06619208.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|299149164|ref|ZP_07042225.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|315919126|ref|ZP_07915366.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110887|gb|EDO12632.1| hypothetical protein BACOVA_01774 [Bacteroides ovatus ATCC 8483]
 gi|292632205|gb|EFF50805.1| peptide deformylase [Bacteroides ovatus SD CMC 3f]
 gi|298512831|gb|EFI36719.1| peptide deformylase [Bacteroides sp. 3_1_23]
 gi|313693001|gb|EFS29836.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 184

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI+NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIENMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEEYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|254372091|ref|ZP_04987584.1| hypothetical protein FTCG_01232 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569822|gb|EDN35476.1| hypothetical protein FTCG_01232 [Francisella novicida GA99-3549]
          Length = 174

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEK--INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           +   ++ +P P+L+ V++ + K  IN D+   I  M E+M   +G+GLAA+Q+G+  R  
Sbjct: 3   MSLEILNYPHPVLKEVAKEVTKDEINDDLRATIAEMRELMLEANGVGLAAIQVGIKKRFF 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           ++       +   ++ I    I       + +EGCLS P   A V R+  + ++ ++   
Sbjct: 63  IMYDNLE-EQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFG 121

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
               I  DG LA C+QHE+DHLNGI F DHL  LKR MI KK  KL+
Sbjct: 122 DEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLM 168


>gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
 gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
          Length = 162

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 96/166 (57%), Gaps = 5/166 (3%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            ++ + +P+LR VS+ + +I  +I  ++D M+E M    G+GLAA Q+G+  R  V ++ 
Sbjct: 2   KIIYYGNPVLREVSKEVTEITDEIRQILDEMVETMREESGVGLAANQVGLTQRFFVGEVD 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
            +  +      INP+II F  +    +EGCLSIP     VKR   I VRY +   +    
Sbjct: 62  GNVKK-----IINPEIIEFGKEEIELEEGCLSIPGIYKRVKRPEKIKVRYQNEKGETVEE 116

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             + + A   QHELDHL+GILFID +S L + +I+K+++++ +  +
Sbjct: 117 ELNEVWARVFQHELDHLDGILFIDKISPLNKRLISKRLAQIKKEGN 162


>gi|301064006|ref|ZP_07204471.1| peptide deformylase [delta proteobacterium NaphS2]
 gi|300441917|gb|EFK06217.1| peptide deformylase [delta proteobacterium NaphS2]
          Length = 171

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 1/152 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P+P+L++ + P++ I+ ++  +ID MLE MY+  GIGLAA Q+GVL R++V
Sbjct: 1   MSHMKIFTYPEPVLKKNAEPVKNIDEELQEIIDQMLETMYAAPGIGLAANQVGVLKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D        NP + INP+I+         +  CLS+PD+ A+V R+A I V+ +D N +
Sbjct: 61  FDGSPREEGANPQILINPEIVAAEGSIKWDEA-CLSVPDFTAEVNRNANIQVKGLDRNGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSR 152
              + A  LLA CLQHE+DHL+GILFID +SR
Sbjct: 120 PLELEAKDLLAVCLQHEIDHLDGILFIDRISR 151


>gi|260892750|ref|YP_003238847.1| peptide deformylase [Ammonifex degensii KC4]
 gi|260864891|gb|ACX51997.1| peptide deformylase [Ammonifex degensii KC4]
          Length = 154

 Score =  130 bits (327), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 9/156 (5%)

Query: 1   MVKKPLVIFPD---PILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M  + +V   D    +LR  ++P++KI   I  LI +M E MY   G+GLAA Q+GV  R
Sbjct: 1   MAVRKIVTLGDSGDKVLREKAQPVDKITPQIQKLIRDMTETMYRAQGVGLAAPQVGVSLR 60

Query: 58  LVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           ++V+D   + ++      +  +            EGCLSIP    +V R+A + VR +  
Sbjct: 61  VIVVDTGSNLYQLINPEIVAREGEEKGR------EGCLSIPGVWGEVVRAASVLVRALTP 114

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL 153
             +   I ADGLLA  LQHE+DHL+GILFID   ++
Sbjct: 115 EGREVSIEADGLLARALQHEIDHLDGILFIDRAEKV 150


>gi|302536804|ref|ZP_07289146.1| peptide deformylase [Streptomyces sp. C]
 gi|302445699|gb|EFL17515.1| peptide deformylase [Streptomyces sp. C]
          Length = 211

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   ++  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 35  TSRPITVVGNPVLHRECKDVTEFGDELARLIDDMFASQKTAEGVGLAANQIGVDAKVFVY 94

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V +NPK++             EGCLS+P   A + R  +  V   D  
Sbjct: 95  DCPDDDGVRHTGVVVNPKLVELPAANRVLDDSNEGCLSVPTAYASLARPDYAEVTGQDAQ 154

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 155 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 200


>gi|291300069|ref|YP_003511347.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
 gi|290569289|gb|ADD42254.1| peptide deformylase [Stackebrandtia nassauensis DSM 44728]
          Length = 183

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +F DP+LR  +  ++  + +   L+ N+ + M    G GLAA Q+GV  R+  
Sbjct: 1   MSIVPIRLFGDPVLRTPADEVKTFDKEFRKLVRNLTDTMLDEGGAGLAAPQLGVGLRVFA 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            D+ D           NP +    ++     EGCLSIP    D  R   +  +  +    
Sbjct: 61  FDVDD-----VIGHLANPVLEFPDEEEQDGPEGCLSIPGLYFDTVRRQNVIAKGYNEYGD 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              I   GL+A CLQHE DHL+GILF+D L   +R    K++ 
Sbjct: 116 PMQIVGTGLMARCLQHETDHLDGILFLDRLDPERRKAAMKEIR 158


>gi|254384637|ref|ZP_04999976.1| peptide deformylase 1 [Streptomyces sp. Mg1]
 gi|194343521|gb|EDX24487.1| peptide deformylase 1 [Streptomyces sp. Mg1]
          Length = 214

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L R  + + +   D+  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 38  TARPITVVGNPVLHRECKDVTEFGEDLARLIDDMFASQKAAEGVGLAANQIGVDAKVFVY 97

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V INPK++             EGCLS+P   A + R  +  V   D  
Sbjct: 98  DCPDDDGVRHTGVVINPKLVELPAASRVLDDSNEGCLSVPTAYAALARPDYAEVEGRDAQ 157

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M +
Sbjct: 158 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMEE 203


>gi|157803421|ref|YP_001491970.1| peptide deformylase [Rickettsia canadensis str. McKiel]
 gi|166198522|sp|A8EXV2|DEF_RICCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|157784684|gb|ABV73185.1| peptide deformylase [Rickettsia canadensis str. McKiel]
          Length = 175

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 64/173 (36%), Positives = 98/173 (56%), Gaps = 5/173 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L++ S  + ++       +D+ML+ MY  D  GLAAVQ+G+L R++V
Sbjct: 1   MSILPIVTAPDERLKQKSHRVLEVTDQTRKFMDDMLKTMYHEDAAGLAAVQVGILKRILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
           ID++DH   + P  F    I+         +     EGC+S+P  R +V R   I ++Y+
Sbjct: 61  IDIKDHDPVERPKDFYPLFIVNPDIIDKSEELVTANEGCISVPRQRVEVARPESIKIKYL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           D + + Q + A+  LA  +QHE DHL G L ID+LS LKRD++ +K+ KL   
Sbjct: 121 DYHNKQQELEANDWLARVIQHEYDHLEGKLMIDYLSSLKRDVVLRKLKKLKNN 173


>gi|306440704|pdb|3OCA|A Chain A, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
 gi|306440705|pdb|3OCA|B Chain B, Crystal Structure Of Peptide Deformylase From Ehrlichia
           Chaffeensis
          Length = 209

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 22  MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 81

Query: 61  IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 82  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 141

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 142 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 201

Query: 164 KLVQ 167
           K  +
Sbjct: 202 KKER 205


>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
 gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
          Length = 165

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 3/148 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDP+LR V++ + K   ++  L+++M + MY  +G+GLAA QIG+  R++V
Sbjct: 1   MSIRIIVKEPDPVLREVAKEVTKFTPNLHKLLNDMADTMYDAEGVGLAAPQIGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +       +V     +I  S+      EGCLSIP+   DV R+  + V   D N  
Sbjct: 61  VDIGEEESGLIEVV---NPVIVLSEGEQFGPEGCLSIPNLNGDVSRADRVKVAGQDRNGN 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFID 148
              + A G LA   QHE+DHLNGILF D
Sbjct: 118 PIEVDASGFLARAFQHEIDHLNGILFTD 145


>gi|302549859|ref|ZP_07302201.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467477|gb|EFL30570.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 199

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 79/162 (48%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L      +     ++  L++++   MY+  G+GLAA QIG   R+ V D
Sbjct: 31  VRPLTLHGDPVLHTPCAEVTDFGPELARLVEDLFATMYAAQGVGLAANQIGEPLRVFVFD 90

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++          EGCLS+P   A  +R     V       +  
Sbjct: 91  CPDDEDVRHLGHVVNPRLVETDGVVIRGPEGCLSLPGLEAGTERYDHAVVEGFTMTGEPV 150

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++  G  A CLQHE DHL G ++ DHLS  +   + +++++
Sbjct: 151 TLHGTGFFARCLQHEYDHLEGRIYADHLSGWRHRKLMRQVAR 192


>gi|302554040|ref|ZP_07306382.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
 gi|302471658|gb|EFL34751.1| polypeptide deformylase [Streptomyces viridochromogenes DSM 40736]
          Length = 216

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +     +   L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGDEFQQLVADMFASQRTAEGVGLAANQIGVDAKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NPK++    +        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCPDDEGVRHTGVVCNPKLVELPAEKRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|260432736|ref|ZP_05786707.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416564|gb|EEX09823.1| peptide deformylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 164

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P + +PD  LR  + P+ +I  +I  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MTVRPCLPWPDKRLRTKAEPVTEITDEIRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D      R   +   NP+I+  S +   + E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VDGSAERGRA--VRLANPEILHSSIELREHDEASPNLPGVSAKIKRPRAVTVRFLNEKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                  G+ AT +QH++DHLNG ++ D LS++KRDM+ +K  K
Sbjct: 119 IDRRDFVGIEATSVQHQIDHLNGRMYFDRLSKVKRDMLLRKAKK 162


>gi|302530616|ref|ZP_07282958.1| polypeptide deformylase [Streptomyces sp. AA4]
 gi|302439511|gb|EFL11327.1| polypeptide deformylase [Streptomyces sp. AA4]
          Length = 188

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I  +P+L + +R I + +  +  L+++M E MY+ +G+GLAA QIG+  R+ V
Sbjct: 1   MTVHPICIAGEPVLHQPTREITEFDDKLAALVEDMFETMYAAEGVGLAANQIGLDLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            D  D    ++  V +NPK+          D     EGCLS P       R+ +  V   
Sbjct: 61  YDCPDDEGVEHKGVVVNPKLETSEIPETMPDPDDDWEGCLSAPGESYPTGRAKWAKVTGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D       +   G  A CLQHE DHL+G +++D L         K + K
Sbjct: 121 DVEGNPIEVEGTGYFARCLQHETDHLDGFIYLDRLVGRHARAAKKMLKK 169


>gi|297157414|gb|ADI07126.1| polypeptide deformylase [Streptomyces bingchenggensis BCW-1]
          Length = 209

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  R + + +  +  LID+M     + +G+GLAA QIGV  ++ V 
Sbjct: 33  TARPITVVGNPVLHKECRDVTEFDDKLAALIDDMFASQKAAEGVGLAANQIGVALKVFVY 92

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D    ++  V  NP +     D        EGCLS+P   A + R  +  VR  D  
Sbjct: 93  DCPDDDGVRHVGVVCNPVLDELPADRRVLDDSNEGCLSVPTAYASLARPDYAVVRGQDAE 152

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 153 GKPIAVQGTGYFARCLQHETDHLYGRLYIDRLSKRDRKDALRQMAE 198


>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 180

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 75/166 (45%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKIN-SDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P+++ P  ILR+ +R +   + + +   I  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 14  PILVAPQAILRQKTRLVRPEDTAQLREAIPRMFAAMYKAPGIGLAAPQVGLGLRFALVDV 73

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            D    +NPMV INP II  ++  SV +EGCLS+P+  A+V R   + VRY D   +   
Sbjct: 74  ADKDEARNPMVLINPDIIAETETMSVREEGCLSLPNQYAEVARPESVRVRYQDLEGKRHE 133

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I  DGLLATC+QHE+DHL GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 134 IEVDGLLATCIQHEIDHLEGILFVDHLSALKRNMIMRRLAKEQRLR 179


>gi|188995931|ref|YP_001930183.1| peptide deformylase [Porphyromonas gingivalis ATCC 33277]
 gi|238689275|sp|B2RMJ1|DEF_PORG3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|188595611|dbj|BAG34586.1| putative peptide deformylase [Porphyromonas gingivalis ATCC 33277]
          Length = 189

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLHGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|295836587|ref|ZP_06823520.1| peptide deformylase [Streptomyces sp. SPB74]
 gi|197697279|gb|EDY44212.1| peptide deformylase [Streptomyces sp. SPB74]
          Length = 210

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 3/165 (1%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
             P+ +  +P+L +    +     ++  L+D+M     + +G+GLAA Q+GV  ++ V D
Sbjct: 35  VLPITVVGNPVLHKECADVTDFGPELAKLVDDMFASQRAAEGVGLAANQVGVSLKVFVYD 94

Query: 63  LQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            QD    ++  V  NPK+              EGCLS+P   A   R+ +  V   D + 
Sbjct: 95  CQDDQGERHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHG 154

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 155 NAIKVRGTGYFARCLQHETDHLYGSLYLDRLSKRDRKDALKQMAE 199


>gi|163842029|ref|YP_001626434.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
 gi|162955505|gb|ABY25020.1| peptide deformylase [Renibacterium salmoninarum ATCC 33209]
          Length = 190

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+VI  +P+L R +  ++  +  +  L+ +M E     +G GLAA QIG+  R+ V
Sbjct: 1   MSVHPIVIKGEPVLHRRATEVKDFDDALRTLVVDMHETNAVANGAGLAAPQIGIGLRVFV 60

Query: 61  IDLQDHAHRKNPMVFINPKII-----TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
             +++        V +NP ++       + D     EGCLS+P     +KR+ ++ V   
Sbjct: 61  YAMENDDDVPAKGVLVNPTLVLGKVSGTAPDPDEESEGCLSVPGEHFPLKRAEWVRVSGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           D         A G  A C+QHE DHL+G L++D L     D   +K  ++ + +
Sbjct: 121 DEFGNPVQFEATGWFARCMQHEYDHLDGKLYVDRLV----DRYQRKARRIAKDK 170


>gi|297202274|ref|ZP_06919671.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
 gi|197710208|gb|EDY54242.1| polypeptide deformylase [Streptomyces sviceus ATCC 29083]
          Length = 216

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + + +   ++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTEFGEELDQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG---CLSIPDYRADVKRSAFITVRYMDCN 118
           D QD   R++  V  NPK++    D     E    CLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGRRHVGVVCNPKLVDLPADRRQLDESNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|290957509|ref|YP_003488691.1| polypeptide deformylase [Streptomyces scabiei 87.22]
 gi|260647035|emb|CBG70134.1| putative polypeptide deformylase [Streptomyces scabiei 87.22]
          Length = 216

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
              P+ +  +P+L +  + + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V 
Sbjct: 40  TSLPITVVGNPVLHKECKDVTEFGDELAKLVDDMFASQRTAEGVGLAANQVGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D  D   +++  V  NPK++             EGCLS+P     + R  +  V   D  
Sbjct: 100 DCPDDEGKRHTGVICNPKLVELPAEARRLDDSNEGCLSVPTAYMPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+  R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRDRKDALRQMAE 205


>gi|302877267|ref|YP_003845831.1| peptide deformylase [Gallionella capsiferriformans ES-2]
 gi|302580056|gb|ADL54067.1| peptide deformylase [Gallionella capsiferriformans ES-2]
          Length = 167

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 95/168 (56%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L  +++ + ++N     L+ +M E MY+  G+GLAA Q+ V  +++V
Sbjct: 1   MAILQILQYPDERLHTIAKKVVQVNDVTRKLVQDMAETMYAAPGVGLAATQVNVHEQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +   D +   + ++      I         +EGCLS+P    +V+R+  I+VR ++   +
Sbjct: 61  V---DVSETHDELLVFINPEILHRSGEQEGEEGCLSVPGIYENVRRADKISVRALNQQGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+G LA C+QHE+DHL+G +F+++LS+LK+  +  K+ K  + 
Sbjct: 118 SFTLDAEGFLAVCIQHEVDHLHGRVFVEYLSQLKQSRLRAKLKKRRRE 165


>gi|17433052|sp|Q9FV54|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
           AltName: Full=Polypeptide deformylase; Flags: Precursor
 gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  ++++  L+D M ++MY TDGIGL+A Q+G+  +L+V + 
Sbjct: 87  LKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNA 146

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NP++  +S     Y+EGCLS P    DVKR   + V   D N     
Sbjct: 147 AGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFE 206

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +K+  L +  +
Sbjct: 207 ISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYE 253


>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
          Length = 198

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+   PI K   ++  LI++M + MY ++G+GLAA Q+G+  RL V+
Sbjct: 1   MILPIVAYGDPVLRKECMPIAKDYPELPKLIEDMYQTMYHSNGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDHAHRK------------NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D +                      FIN KI+    +   + EGCLSIP    DV R   
Sbjct: 61  DTEPFCENDDLSDAERDYLKGFKKAFINAKILKEEGEPWPFSEGCLSIPGISEDVLRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I + Y D +         GL+A  +QHE DH+ GILF DHLS  K+ ++  K++ +   +
Sbjct: 121 IVIEYQDEHFATHTETFSGLVARVIQHEYDHIEGILFTDHLSSFKKQLLKNKLNNISNGK 180


>gi|114330413|ref|YP_746635.1| peptide deformylase [Nitrosomonas eutropha C91]
 gi|114307427|gb|ABI58670.1| peptide deformylase [Nitrosomonas eutropha C91]
          Length = 168

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +++  +  +  +I  L  NM E MY+  G+GLAA Q+ V  R+VV
Sbjct: 1   MAILNILRYPDERLHKIAAVVPSVTREIRILASNMAETMYAAAGVGLAATQVDVHKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D +  ++ ++ +    I  S   S  QEGCLS+P     V R+  ITVR  D + +
Sbjct: 61  I---DTSETRDELLVLINPEIIASTGKSETQEGCLSVPGIFDKVSRAEQITVRATDIDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              + A GLLA C+QHE+DHL G +F+++LS  K+  I  K+ K  + +
Sbjct: 118 SFEMDATGLLAVCIQHEMDHLIGKVFVEYLSPFKQSRILSKLKKQARKQ 166


>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
 gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
          Length = 194

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 13/180 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DPILR+ +R IEK   D+  L ++M E M+  +G+GLAA QIG+  R+ V+
Sbjct: 1   MIYPIVAYGDPILRKPTRFIEKDEVDLKKLSEDMFETMHGANGVGLAAPQIGLNIRIFVV 60

Query: 62  DLQDHAHR-------------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSA 108
           D    A R                  FINP+I+  + +   ++EGCLSIP  R DV R  
Sbjct: 61  DGTPFAERDEDDDDEPDLSLVDFKKTFINPEILEETGEEWGFEEGCLSIPGIRGDVYRPE 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
            + +RY D +         G+ A  +QHE DHL G LF+D+L  LK+  I KK++ + + 
Sbjct: 121 TLRIRYRDLDWNEHEETYSGMAARIIQHEYDHLLGKLFVDYLPTLKKQFIKKKLTDISKG 180


>gi|34541765|ref|NP_906244.1| peptide deformylase [Porphyromonas gingivalis W83]
 gi|39930820|sp|Q7MT07|DEF_PORGI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|34398083|gb|AAQ67143.1| polypeptide deformylase [Porphyromonas gingivalis W83]
          Length = 189

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I      +  LI NM E MY +DGIGLAA QIG+  R++VI
Sbjct: 1   MLLPIYLYGHPVLRKVAEDITPDYPKLKELIANMTESMYHSDGIGLAAPQIGLPIRVLVI 60

Query: 62  DLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                V IN  I    +D     EGCLS+P     V+R   I +RY+D
Sbjct: 61  DADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTSIRIRYVD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + Q       G  A  +QHE DH++G LFIDH+S +++ +I  K+  +++ +
Sbjct: 121 EDFQPHEEVLQGFAARVVQHEYDHIDGKLFIDHISPIRKQLIKGKLQNIIKGK 173


>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
 gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
          Length = 170

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+  +N D   +ID+M + MY  +GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVLNVNDDTRKIIDDMFDTMYQEEGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  ++  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILDAEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRDGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+ K+ +  +
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLMKVKKQME 167


>gi|29829575|ref|NP_824209.1| polypeptide deformylase [Streptomyces avermitilis MA-4680]
 gi|39931079|sp|Q82IV0|DEF1_STRAW RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase [Streptomyces avermitilis MA-4680]
          Length = 216

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             +P+ +  +P+L +  + +    +++  L+ +M     + +G+GLAA QIGV  ++ V 
Sbjct: 40  TSRPITVVGNPVLHKECKDVTDFGAELEQLVADMFASQRTAEGVGLAANQIGVDLKVFVY 99

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF---SVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           D QD    ++  V  NPK++    D        EGCLS+P   A + R  +  V   D  
Sbjct: 100 DCQDDEGTRHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPLARPDYAEVTGQDEK 159

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
                +   G  A CLQHE DHL G L+ID LS+ +R    ++M++
Sbjct: 160 GNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKRERKDALRQMAE 205


>gi|119964524|ref|YP_948136.1| peptide deformylase [Arthrobacter aurescens TC1]
 gi|119951383|gb|ABM10294.1| peptide deformylase [Arthrobacter aurescens TC1]
          Length = 190

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ I+ +P+L R +  +E  + ++  LI +M E   + +G+GLAA QIGV  RL V
Sbjct: 1   MTVLPVTIWGEPVLHRRASEVEVFDDELRALIADMFETNDAANGVGLAAPQIGVGKRLFV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFS-----DDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
               +        V +NP +          D   + EGCLS P     ++R+ +  V+  
Sbjct: 61  YKYANDDDVPEQGVVVNPVLTLSKVSGALPDPDEHVEGCLSFPGEYYPLQRAEWTRVQGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D N       A G  A  LQHE DHL+GIL+++ L         K+  K
Sbjct: 121 DGNGNALDFEATGWFARILQHEFDHLDGILYVNRLVDRYSKKALKQAKK 169


>gi|77464453|ref|YP_353957.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388871|gb|ABA80056.1| N-formylmethionyl tRNA deformylase [Rhodobacter sphaeroides 2.4.1]
          Length = 163

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGRMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|256392284|ref|YP_003113848.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
 gi|256358510|gb|ACU72007.1| peptide deformylase [Catenulispora acidiphila DSM 44928]
          Length = 188

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 6/162 (3%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
             + + +F DP+L   + P+   + ++  L+ ++ E M    G GLAA QIGV  R+   
Sbjct: 8   TVQAIRLFGDPVLTTPATPVVDFDKELRTLVKDLTETMLDAPGSGLAAPQIGVGLRVFTW 67

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           ++ +               +  SD+     EGCLSIPD     KR+  +  +    + + 
Sbjct: 68  NVDNELGHLV------NPTLDLSDEEQDGDEGCLSIPDLAFPCKRALRVVAKGWTMHGEP 121

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             +    +LA C+QHE DHL+G+LFID L R  R    + + 
Sbjct: 122 VEVEGSEMLARCIQHETDHLDGVLFIDRLDREWRKKAMRAIR 163


>gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681842|ref|YP_002468228.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682397|ref|YP_002468781.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471547|ref|ZP_05635546.1| peptide deformylase [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11131992|sp|P57563|DEF_BUCAI RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767572|sp|B8D9R9|DEF_BUCA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|254767573|sp|B8D821|DEF_BUCAT RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31) [imported] - Buchnera
           sp. (strain APS)
 gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622130|gb|ACL30286.1| polypeptide deformylase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624685|gb|ACL30840.1| polypeptide deformylase [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 173

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 3/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  LR +++P+++IN  I  + ++M++ MY  +GIGLAA Q+ +  +++V
Sbjct: 1   MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++  +          +    I   +     +EGCLSIP+Y+A + RS +I V+ ++ + +
Sbjct: 61  VNTMEQKKNNL---VLINPKIIKKEGDISIEEGCLSIPEYQASIPRSNYIQVQAVNLDGE 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              I A  +L+ C+QHE+DHL G LFID+LS+ KR+ I KK  K+ +
Sbjct: 118 KIEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINK 164


>gi|332043310|gb|EGI79507.1| peptide deformylase [Lacinutrix algicola 5H-3-7-4]
          Length = 196

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/180 (36%), Positives = 94/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L+  ++ I+K   ++  LI NM E M+   G+GLAA QIG+  R+ ++
Sbjct: 1   MVLPIVAYGDPVLKVKAKEIDKDYPNLKELITNMQETMHGAYGVGLAAPQIGLPIRMFLV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FINP I+  S D   + EGCLSIPD R DV R   
Sbjct: 61  DASPFADDDVLEDDERAFLKNFKHTFINPTILEESGDEWAFNEGCLSIPDVREDVFRKPN 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           I V Y D + +   +   GL A   QHE DH+ GILF D LS LK+ +I  K+  + + +
Sbjct: 121 IKVEYFDEDFKKHTMELSGLAARVFQHEYDHIEGILFTDKLSSLKKRLIKGKLLNISKGK 180


>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   +  + +P+L+   RP+E  +  +  L +NMLE MY+ +GIGLAA Q+ +  +LVVI
Sbjct: 1   MLLEIAQYGNPVLKEKCRPVEHFDDSLKTLAENMLETMYAAEGIGLAAPQVSIPIQLVVI 60

Query: 62  DLQDHAHRKNP--------------MVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D+                        +     ++        + EGCLS+   RA V R 
Sbjct: 61  DIPKEEESVTWLKVNGEDKELSDIMPLMFANPVLEPYGPMHPFHEGCLSVMKIRASVVRP 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            F+    +  + +   I  +GLLA CLQHE DHLNGILF++ +S  ++  +  K+ +L 
Sbjct: 121 DFVKATVLLIDGREITIDCNGLLARCLQHECDHLNGILFVERVSSAQKITLRNKLKRLA 179


>gi|255529965|ref|YP_003090337.1| peptide deformylase [Pedobacter heparinus DSM 2366]
 gi|255342949|gb|ACU02275.1| peptide deformylase [Pedobacter heparinus DSM 2366]
          Length = 186

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 2/169 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +K P++ + DP+L++V  PIE+   D+  LI NM E MY+  G+GLAA Q+G+  RL ++
Sbjct: 1   MKLPIIAYGDPVLKKVCTPIEQTYPDLKQLISNMFETMYNAHGVGLAAPQVGLPIRLFIV 60

Query: 62  DL--QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           D    +    K   VFIN +I+  + +   + EGCLSIPD R DV R   I ++Y D + 
Sbjct: 61  DTGADEGDKNKFKKVFINAEILEETGEPWAFNEGCLSIPDIREDVMRKPNIRIKYYDEHW 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
           +       G+ A  +QHE DH+ G LF D LS L++ M+  K+  + + 
Sbjct: 121 ELHEEEVSGMPARVIQHEYDHIEGKLFTDTLSLLRKTMLKSKLDAISKG 169


>gi|322421200|ref|YP_004200423.1| peptide deformylase [Geobacter sp. M18]
 gi|320127587|gb|ADW15147.1| peptide deformylase [Geobacter sp. M18]
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 108/170 (63%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L+ +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MVRKILTYPDPELKKRSLPVTVITDKTRELVRDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+     +   +V INP+II  ++  +  +EGCLS+P + A+V+R A + V+ ++ + + 
Sbjct: 61  DVSCKDEKPELIVAINPEII-HAEGEAYEEEGCLSVPKFSANVRRHAKVVVKSLNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK-LVQLRD 170
            +I AD LLA   QHE+DHL+G+LFIDHLS LK+ +  K+  + L + ++
Sbjct: 120 VVIRADDLLAIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQRALEEAKE 169


>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
 gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 4   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 62

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 63  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 120 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 169


>gi|284990128|ref|YP_003408682.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
 gi|284063373|gb|ADB74311.1| peptide deformylase [Geodermatophilus obscurus DSM 43160]
          Length = 161

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+    DP+LR  +  +   + ++  L+ ++ + +      G+AA QIGV  R   
Sbjct: 1   MTIRPIRELGDPVLRTPADEVRSFDKELAALVRDLEDTVADPGRAGVAAPQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                          +NP+I+  S++     EGCLSIP   A   R+    V   D + +
Sbjct: 61  Y-----NVDGRIGHVVNPRIVELSEETQDGDEGCLSIPGLWAPTVRAMHAVVEGFDVHGE 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              +   GL+A  LQHE+DHL+G +F+D L+   R    + + 
Sbjct: 116 PVRLEGTGLMARALQHEVDHLDGKVFLDRLTGDARKAALRALR 158


>gi|213963665|ref|ZP_03391916.1| peptide deformylase [Capnocytophaga sputigena Capno]
 gi|213953660|gb|EEB64991.1| peptide deformylase [Capnocytophaga sputigena Capno]
          Length = 193

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P++ + DP+LR+V   I     ++  LI NM + M    G+GLAA Q+G+  RL V+
Sbjct: 1   MVLPIIGYGDPVLRKVGEDITPDYPELKALIANMYDTMRHAYGVGLAAPQVGLAIRLFVV 60

Query: 62  DLQDH------------AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI   + D   + EGCLSIP  R DV R   
Sbjct: 61  DASPFAEDDDLTAEEQAFLKTFQKTFINAKITEETGDKWNFNEGCLSIPGVREDVSRHKQ 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           IT+ Y+D + + Q +  DGL A  +QHE DH+ GILF D LS  K+ +I  K++ +++ +
Sbjct: 121 ITIEYLDEDFKPQTLTLDGLAARIVQHEYDHIEGILFTDKLSAFKKQLIKTKLNNIMKGK 180


>gi|323496228|ref|ZP_08101286.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
 gi|323318505|gb|EGA71458.1| peptide deformylase [Vibrio sinaloensis DSM 21326]
          Length = 167

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +E  +S I  LID+ML+ +Y   +GIGLA+ Q+G    +V
Sbjct: 1   MTVLKILTAPDPKLKTQAHKVEDFSS-IQTLIDDMLDTLYDTDNGIGLASTQVGRSEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D+     P++ +NP++++ S      +  CLS+PDY A+V+R   + V   D + 
Sbjct: 60  IIDLSDNRDE--PLILVNPEVVSGSHKALGQEG-CLSVPDYYAEVERYTSVVVSAQDRHG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL G LFID+LS LKR M  KK+ K ++ R
Sbjct: 117 NSITIESDDFLAIVMQHEIDHLAGNLFIDYLSPLKRQMAMKKVKKHLKSR 166


>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
 gi|300074269|gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 6/161 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  + ++   DP L R ++P+ +    ++  L+D+M + M + +G GLAA QIGV  +LV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 60  VI-----DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           +           A      V INP +   S+      EGCLS+P  R  V R + +  + 
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
           +D N +      +G  A  +QHE DHL GIL+   +   +R
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRR 161


>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391665|ref|ZP_06635999.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290952199|gb|EFE02318.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 170

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 101/162 (62%), Gaps = 3/162 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++I+P+  L+ V  P+ ++N +   +IDNM + MY   GIGLAA Q+ +L R++ 
Sbjct: 1   MTALNVLIYPEEHLKVVCDPVVEVNDNTRKIIDNMFDTMYQEGGIGLAAPQVDILQRIIT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID++     +     +    I  S+  +  +EGCLSIP +RA V R   +TV+ +D + +
Sbjct: 61  IDIEGDKQNQL---VLINPEILESEGETGIEEGCLSIPGFRALVPRKEKVTVKALDRHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
              + ADGLLA C+QHE+DHLNGILF+D+LS LKR  I +K+
Sbjct: 118 EFTLKADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKL 159


>gi|302561940|ref|ZP_07314282.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
 gi|302479558|gb|EFL42651.1| polypeptide deformylase [Streptomyces griseoflavus Tu4000]
          Length = 184

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 76/162 (46%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            +PL +  DP+L    R +     ++  L+D++   MY   G+GLAA Q+G   R+ V D
Sbjct: 16  VRPLTLLGDPVLHAPCREVTDFGPELARLVDDLFATMYEARGVGLAANQVGEPLRVFVYD 75

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+ +          EGCLS+P   A  +R     V       +  
Sbjct: 76  CPDDEDVRHLGHVVNPRPVVTDGVVVRGPEGCLSLPGLEAGTERYDHAVVEGFTVTGEPV 135

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            ++  G  A CLQHE DHL+G ++ D L+  +   + ++  +
Sbjct: 136 TVHGTGFFARCLQHECDHLDGRIYADRLTGWRHRRLMRQADR 177


>gi|149913451|ref|ZP_01901984.1| peptide deformylase [Roseobacter sp. AzwK-3b]
 gi|149812571|gb|EDM72400.1| peptide deformylase [Roseobacter sp. AzwK-3b]
          Length = 165

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 2/166 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +  + +PD  LR  + P+E I  ++  + D+M++ M +  G+GLAA QIGV+ RL V
Sbjct: 1   MAVRRCLPWPDKRLRSPAAPVEAITDEVRAIWDDMIDTMEAMPGVGLAAPQIGVMLRLAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  +   R   +   NP+I+  S +   ++E   ++P   A +KR   +TVR+++   +
Sbjct: 61  VDASE--TRGQAVRMANPEILHSSIELRSHEEASPNLPGVSAAIKRPRAVTVRFLNTQGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
            +     GL AT +QH++D L G LF+D LS++KRDM+ +K  KL 
Sbjct: 119 MEERDFVGLWATSVQHQIDQLEGRLFVDRLSKVKRDMLLRKARKLA 164


>gi|330445859|ref|ZP_08309511.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490050|dbj|GAA04008.1| peptide deformylase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 173

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/172 (39%), Positives = 100/172 (58%), Gaps = 5/172 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYST-DGIGLAAVQIGVLYRL 58
           M    ++  P+P LR  +  +  + ++ I  LID+ML+ MY T +GIGLAA Q+G    +
Sbjct: 1   MAVLEILTEPNPKLRVQAEEVTDVKAEHIQTLIDDMLQTMYETGNGIGLAAPQVGRKESI 60

Query: 59  VVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           +VIDL +  +            I   ++  V QEGCLS+PDY ADV+R   I +  +D +
Sbjct: 61  IVIDLSEERNEPQ---VFVNPKIVRGENPVVGQEGCLSVPDYYADVERFEKIELTALDRD 117

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
                +  D  LA  LQHE+DHL GILFID+LS LKR M  KK+ K +++++
Sbjct: 118 GNDIHLERDDFLAIALQHEIDHLKGILFIDYLSPLKRQMAMKKVKKYLKMQE 169


>gi|227833011|ref|YP_002834718.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262182501|ref|ZP_06041922.1| peptide deformylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454027|gb|ACP32780.1| polypeptide deformylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 169

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + ++ DP+L   +  I +    +  L  +MLE M    G+GLAA QIGV  R+  
Sbjct: 1   MTVREVRLYGDPVLTTRAEEITEFGPSLERLAQDMLETMEDAGGVGLAANQIGVTKRIF- 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +    H         INP+     ++  +  EGCLSIP      +R + + +R  D   +
Sbjct: 60  VFDCSHFQHGLRGAVINPEWEAVGEEMQLGTEGCLSIPGISQPTERFSTVRLRGYDPQGR 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
              + A GL+A C+QHE DHL+G+LF+  LS   R    K + 
Sbjct: 120 PVSMLASGLMARCIQHETDHLDGVLFLQRLSDELRKESMKTIR 162


>gi|255692008|ref|ZP_05415683.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
 gi|260622254|gb|EEX45125.1| peptide deformylase [Bacteroides finegoldii DSM 17565]
          Length = 184

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHILEVGGEEVSMEEGCLSLPGIHETVKRGDKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 ENFVEYEEVVEGYLARVMQHEFDHLDGKMFIDHISPLRKQMIKGKLNTMLKGK 173


>gi|291333895|gb|ADD93575.1| peptide deformylase [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 171

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/169 (36%), Positives = 99/169 (58%), Gaps = 1/169 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR  ++P++++ +    LIDNM+  MY + GIGLAA Q+    R++V
Sbjct: 1   MKLLKILEFPDPRLRTKAKPVQEVTNVHKELIDNMIHTMYESKGIGLAATQVDFHERILV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +       +       I    + S Y+EGCLS+P +  ++ R   I V Y+D + +
Sbjct: 61  IDISEERDDPQ-VFINPEVEILNKKEKSGYEEGCLSVPGFYEEIIRPEKIKVTYLDRDGK 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            Q +  +GLLA  +QHE+DHL GIL +D++S +KR  I +K+ K  + +
Sbjct: 120 KQTLMPEGLLAVVIQHEIDHLEGILMVDYISSIKRQRIKQKLQKSAKEK 168


>gi|167752475|ref|ZP_02424602.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
 gi|167659544|gb|EDS03674.1| hypothetical protein ALIPUT_00726 [Alistipes putredinis DSM 17216]
          Length = 181

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/173 (36%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V+F  P+LR   R I     ++  LI++M   +   +G+GLAA QIG   RL ++
Sbjct: 1   MIYPIVVFGAPVLREKCREIGPDYPEVKKLIEDMFLTLEEAEGVGLAAPQIGKSIRLFIV 60

Query: 62  DLQDHAHRK-----NPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D                 FINP+I   S++  +Y+EGCLS+P     V+RS  I +RY+D
Sbjct: 61  DCTPWGEDHPELADYRRAFINPEIYEVSEETKLYEEGCLSLPGLHESVRRSLAIRMRYLD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N +       GL A  +QHE DHL G++F D LS L+R++I  K+  L + R
Sbjct: 121 ENFEPHDEEFTGLPAWVIQHEYDHLEGVVFTDRLSPLRRNLIKSKLMSLTKGR 173


>gi|315639061|ref|ZP_07894229.1| peptide deformylase [Campylobacter upsaliensis JV21]
 gi|315480837|gb|EFU71473.1| peptide deformylase [Campylobacter upsaliensis JV21]
          Length = 177

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 3/171 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+  L   S P+EK + ++  L+D+M E M S+ G+GLAA+Q+ V  R+ ++
Sbjct: 1   MVRKIITYPNKRLFLKSLPVEKFDQELHTLLDDMYETMLSSGGVGLAAIQVDVPLRVFIV 60

Query: 62  DLQDHAHRKNPMVF---INPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++ D    +        INP I   +D+  V  EGCLS+PD+  +V+R   IT++Y +  
Sbjct: 61  NIIDENEEQKKEDLLEIINPVITPLNDELIVCTEGCLSVPDFFEEVQRHRKITLKYQNRF 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            + + + A+  LA  +QHE DHL+G LFI+ L   KR+  +K+  K  + +
Sbjct: 121 GKEKELEAEDFLAVAIQHENDHLDGHLFIEKLPFSKREKFSKEFKKQRKSK 171


>gi|291612480|ref|YP_003522637.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
 gi|291582592|gb|ADE10250.1| peptide deformylase [Sideroxydans lithotrophicus ES-1]
          Length = 167

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PD  L +V++ +E+IN     L+ +M E MY+  GIGLAA Q+    RL+V
Sbjct: 1   MAILPIIQYPDERLHKVAKKVEQINEATRKLVRDMAETMYAAPGIGLAATQVDKHIRLIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ +               +  S      +EGCLS+P     V R+ F+TV  +D + +
Sbjct: 61  IDVSETHDDL---KVFINPELVDSMGDKENEEGCLSVPGIYEKVTRAEFVTVNALDEHGK 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + A+GLLA C+QHE+DHL G +F++ LS LK+  I  K+ K  + 
Sbjct: 118 PFTLNAEGLLAVCIQHEMDHLQGRVFVEKLSHLKQTRIRAKLKKQRRE 165


>gi|242309635|ref|ZP_04808790.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
 gi|239523636|gb|EEQ63502.1| peptide deformylase [Helicobacter pullorum MIT 98-5489]
          Length = 169

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/168 (31%), Positives = 98/168 (58%), Gaps = 2/168 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +   ++ +P+P+LR++S+PIE  +  +  L+D M E M + +G+G++A+Q+    R ++I
Sbjct: 1   MMLEVITYPNPLLRQISKPIENFDESLHQLLDAMYETMLNKNGVGISAIQVAKPIRALLI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDF--SVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            L D    ++    +        +     ++ EGCLS+P++  +VKR + + + Y +   
Sbjct: 61  CLPDEEGNQHKENLLEIINPEIIEKNGEILFNEGCLSVPEFYEEVKRYSSLKIHYQNRYG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           ++  + A+  LA  LQHE+DHLNGILFID LS +KR    K++ +  +
Sbjct: 121 ENLQLEANDYLAVALQHEIDHLNGILFIDKLSIIKRKKFEKELKQKRK 168


>gi|73666676|ref|YP_302692.1| peptide deformylase [Ehrlichia canis str. Jake]
 gi|72393817|gb|AAZ68094.1| peptide deformylase [Ehrlichia canis str. Jake]
          Length = 185

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 14/181 (7%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V  PD  L   S  + +++  +  L+D+M E M+   G+GLAAVQ+G+  R++V
Sbjct: 1   MSVLPIVTVPDKRLSLCSEEVREVDQSVKKLVDDMFEAMHVNKGVGLAAVQVGIHKRVLV 60

Query: 61  IDLQDHAH--------------RKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKR 106
           +D+ +                    P   INPKI+  S +    +EGCLS+PDY   V R
Sbjct: 61  VDVPEEFRETDDITSQIEGYELCGGPYCIINPKIVDASQEKVTLREGCLSVPDYFDYVVR 120

Query: 107 SAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLV 166
             ++TV+Y+D N    II A G LA CL+HE+DHLNGI+F+ +LS+ KRD    K+ K+ 
Sbjct: 121 PQYVTVQYLDYNGNECIIKAQGWLARCLEHEIDHLNGIVFLKYLSKFKRDFAIGKVKKMR 180

Query: 167 Q 167
           +
Sbjct: 181 K 181


>gi|221640345|ref|YP_002526607.1| peptide deformylase [Rhodobacter sphaeroides KD131]
 gi|221161126|gb|ACM02106.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
          Length = 163

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P++ +PDP L +   P E     +  L  +ML  MY  +G GLAA Q+G + RL V
Sbjct: 1   MAVLPILRWPDPRLSQACAPAEP-GPALEALASDMLATMYHAEGRGLAAPQVGHMVRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D         P VF+NP+I+  ++      EGCLSIP  R  V R+  I +R+      
Sbjct: 60  MDTLWKEAPAAPQVFVNPQILWMAEARVEGPEGCLSIPGARPLVARAPEIRLRWTSLFGA 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
            Q  +  G+ A C QHE+DHL+GI+ +D LS   RD   ++M 
Sbjct: 120 EQEAHLTGIEAICAQHEIDHLDGIVTLDRLSPAARDEALREME 162


>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
 gi|238692163|sp|B3EE19|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
          Length = 185

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/170 (39%), Positives = 100/170 (58%), Gaps = 3/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV- 60
           +  P+ I+ D +LR+ + P+E ++ ++  L+ NM E MYS  GIGLAA Q+G   RL+V 
Sbjct: 1   MIVPINIYSDDVLRQQALPLEGVDKEVEELLGNMFETMYSAPGIGLAAPQVGRSLRLLVL 60

Query: 61  -IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            I          PMV INP+I+      S+ +EGCLS+P  + DV R + I++ Y D + 
Sbjct: 61  DISCMREYANVKPMVVINPEIVAVKGYRSM-EEGCLSLPGLQGDVVRPSSISLNYRDEHF 119

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           + Q     GLLA  LQHE+DHL+G LF+D L + +R  + K++  L   R
Sbjct: 120 EGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQKKERRKVQKELDALASGR 169


>gi|327402962|ref|YP_004343800.1| peptide deformylase [Fluviicola taffensis DSM 16823]
 gi|327318470|gb|AEA42962.1| peptide deformylase [Fluviicola taffensis DSM 16823]
          Length = 198

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 14/181 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+L++ +  I+    ++  LI++M E MY   G+GLAA QI    RL V+
Sbjct: 1   MILPIVAYGDPVLKKEAVEIDANYPELKKLIEDMFETMYEASGVGLAAPQINRSIRLFVV 60

Query: 62  DLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRS 107
           D                         VFINP I   + +   + EGCLSIP  R +V R 
Sbjct: 61  DGSPFAETDEDEEEDPKAEGMEGFKRVFINPIIEEETGESWGFHEGCLSIPKIREEVMRK 120

Query: 108 AFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
             I + Y D N Q    + DG  A  +QHE DH+ G+LF DHLS LKR +++K++  + Q
Sbjct: 121 EKIRITYYDENWQLHDEWFDGYKARIIQHEYDHIEGVLFTDHLSVLKRRLLSKRLQNISQ 180

Query: 168 L 168
            
Sbjct: 181 G 181


>gi|152966929|ref|YP_001362713.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
 gi|151361446|gb|ABS04449.1| peptide deformylase [Kineococcus radiotolerans SRS30216]
          Length = 181

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+ +F DP+LR+ +  +   + ++  L+ ++ + M +  G GLAA Q+GV  R+  
Sbjct: 1   MAIQPIRLFGDPVLRQRADEVTTFDKELRQLVKDLEDTMLAAPGAGLAAPQLGVSLRVFT 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
               D              ++  S++     EGCLS P   AD +RS  +  +  D + +
Sbjct: 61  YHADDEIGHLV------NPVLDLSEECQEGDEGCLSFPGIVADTRRSLHVVAKGFDMHGE 114

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              I      A  +QHE DHL+G+LFID L + +R +  K + +
Sbjct: 115 PITITGSEFKARAIQHETDHLDGVLFIDRLDKAQRKLALKAVRE 158


>gi|146300287|ref|YP_001194878.1| peptide deformylase [Flavobacterium johnsoniae UW101]
 gi|189083071|sp|A5FGV5|DEF_FLAJO RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|146154705|gb|ABQ05559.1| peptide deformylase [Flavobacterium johnsoniae UW101]
          Length = 196

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 12/180 (6%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V + DP+LR+V   I     ++   I NM E MY+  G+GLAA Q+G+  R+ VI
Sbjct: 1   MILPIVGYGDPVLRKVGTAITPDYPNLKETIANMYETMYNAYGVGLAAPQVGLPIRIFVI 60

Query: 62  DLQD------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAF 109
           D                  +     FIN KI+    +   + EGCLSIPD R DV R   
Sbjct: 61  DTTPFSDDEDLPADEQKDLKGFKRTFINAKIVKEEGEEWSFNEGCLSIPDVREDVYRKPT 120

Query: 110 ITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +T+ Y + +   +    DGL+A  +QHE DH+ G+LF D +S LK+ +I KK+  + + +
Sbjct: 121 VTIEYCEEDFVMKTEVFDGLIARVIQHEYDHIEGVLFTDKISSLKKRLIQKKLKNITEGK 180


>gi|328880868|emb|CCA54107.1| Peptide deformylase [Streptomyces venezuelae ATCC 10712]
          Length = 187

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 80/162 (49%)

Query: 3   KKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVID 62
            + + +  DP+L     P+     ++  L+++M   MY+ +G+GLAA Q+GV  R+ V D
Sbjct: 13  VRAMTLLGDPVLHAPCAPVTDFGPELARLVEDMFATMYAANGVGLAANQVGVGLRVFVYD 72

Query: 63  LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQ 122
             D    ++    +NP+++    D     EGCLS+P   A   R     V  +  +    
Sbjct: 73  CPDDEETRHLGHVVNPRLVAADGDVVRGPEGCLSLPGLEAPTPRYDRAVVEGVRLDGTPV 132

Query: 123 IIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   G  A CLQHE DHL G ++ DH++  +R  + + + K
Sbjct: 133 RVEGTGFFARCLQHETDHLEGGVYADHVTGWRRSRLLRAIRK 174


>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
 gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
          Length = 178

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/163 (33%), Positives = 91/163 (55%), Gaps = 1/163 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQ 64
            + +  DP+LR+ ++ +E  + ++ +++D M   MY  DG+GLAA Q+G+  R  ++D +
Sbjct: 2   EIRLIGDPVLRKRAKKVENFDDNLKDVVDEMFSTMYLYDGVGLAAPQVGISLRFFIMDSR 61

Query: 65  DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQII 124
           +   +   +V     II F  +   ++EGCLSIPD   DV R   + VRY D +      
Sbjct: 62  EENEKGKKVVINPE-IIEFLGEEVSFEEGCLSIPDIFEDVVRPEGVRVRYQDLSGNVIEE 120

Query: 125 YADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
              G  A   QHE DHL GILF D L  +K+  + K++++L++
Sbjct: 121 ELHGYQARIFQHETDHLEGILFTDKLPIVKKARLKKELNQLIE 163


>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
 gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
           621H]
          Length = 184

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/166 (43%), Positives = 107/166 (64%), Gaps = 1/166 (0%)

Query: 5   PLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
           P++I P P+LR V+R +   +   I   +  M   MY   GIGLAA Q+G+  R  ++D+
Sbjct: 17  PILIAPQPVLREVTRDVRPEDIAFIREQLPGMFSAMYKAPGIGLAAPQVGLGMRFALVDV 76

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            +    + PM+ INP+II+ SD  +  +EGCLS+P+  A+V R   I VRY +   +   
Sbjct: 77  AEEDAPREPMLLINPEIISDSDQLAAREEGCLSLPNQYAEVVRPESIRVRYRNLAGETIE 136

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
             A GLLATC+QHE+DHL+GILF+DHLS LKR+MI ++++K  +LR
Sbjct: 137 RDASGLLATCIQHEMDHLDGILFVDHLSTLKRNMIMRRLAKEQKLR 182


>gi|262195424|ref|YP_003266633.1| peptide deformylase [Haliangium ochraceum DSM 14365]
 gi|262078771|gb|ACY14740.1| peptide deformylase [Haliangium ochraceum DSM 14365]
          Length = 175

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++PD  LR+ +R +E+++  + +L  N+++ MYS +G+G+AAVQIG   ++ +
Sbjct: 1   MAVLPIVVWPDARLRQETRRVEQVDDAVRDLYRNLVDTMYSLNGLGIAAVQIGDPTQMFI 60

Query: 61  IDLQ--DHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ++           P+ FINP+++  S+D    +EGCLS P     V R A   VR +  +
Sbjct: 61  VEPALAGRDANDEPVAFINPEVVWTSEDSDKSEEGCLSFPGIYVQVDRPAKARVRALGID 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            +   + A+GL A CL HE DHL G L +D +  LKR MI +K+++ 
Sbjct: 121 GEIFEVEAEGLFARCLLHENDHLTGKLLVDFVGPLKRQMIRRKLNRQ 167


>gi|296130000|ref|YP_003637250.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
 gi|296021815|gb|ADG75051.1| peptide deformylase [Cellulomonas flavigena DSM 20109]
          Length = 162

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR    PI  I+  + +L++++LE +      GLAA QIGV  R   
Sbjct: 1   MALREIRTVGDPVLRTPCDPITTIDERVRSLVEDLLETVDMDGRAGLAANQIGVGLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D++    EGCLS+P       R+ +  V   D + +
Sbjct: 61  WNIDDEIG----YVLNPVIVELSEDEYQDGDEGCLSVPGLWFPTHRAWYARVVGTDLDGR 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
             ++    L+A CLQHE+DHL+G+L++D L R  R    + + + 
Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYLDRLERSVRKKAMRAIREQ 161


>gi|312197386|ref|YP_004017447.1| peptide deformylase [Frankia sp. EuI1c]
 gi|311228722|gb|ADP81577.1| peptide deformylase [Frankia sp. EuI1c]
          Length = 205

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 17/180 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+ +  DP+LR  + P+   +  +  L+D+M+E MY+  G+GLAA Q+GV  RL V
Sbjct: 1   MTVLPIRVLGDPVLRTPAGPVTVFDDRLRRLVDDMIETMYAAPGVGLAAPQVGVGLRLFV 60

Query: 61  IDLQDHAHRKNPM-----------------VFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
            D     +R +                     +   ++         QEGCLSIP     
Sbjct: 61  FDTDWQPNRPDRHEDDAVPEAAGRARGRAPRVVANPVLELGPGEQNDQEGCLSIPGLHYA 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             R+A  TVR +D           GLLA CLQHE DHL G L++D L+ L R    + + 
Sbjct: 121 TARAAAATVRGVDAAGDPVEYAGTGLLARCLQHEADHLAGTLYVDRLTGLTRRSAQRALR 180


>gi|29345830|ref|NP_809333.1| peptide deformylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253567816|ref|ZP_04845227.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298384715|ref|ZP_06994275.1| peptide deformylase [Bacteroides sp. 1_1_14]
 gi|39930885|sp|Q8AAP4|DEF_BACTN RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841889|gb|EES69969.1| peptide deformylase(PDF) [Bacteroides sp. 1_1_6]
 gi|298262994|gb|EFI05858.1| peptide deformylase [Bacteroides sp. 1_1_14]
          Length = 184

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/173 (37%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPEYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP II    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKDFNKAYINPHIIEVGGEEVSMEEGCLSLPGIHESVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            N        +G LA  +QHE DHL+G +FIDHLS L++ MI  K++ +++ +
Sbjct: 121 ENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLSPLRKQMIRGKLNTMLKGK 173


>gi|323493448|ref|ZP_08098570.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
 gi|323312271|gb|EGA65413.1| peptide deformylase [Vibrio brasiliensis LMG 20546]
          Length = 167

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 105/168 (62%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ ++S +  LID+ML+ +Y + +GIGLAA+Q+G    +V
Sbjct: 1   MAVLDILTAPDPRLKVTAEKVQDVSS-VQTLIDDMLDTLYATDNGIGLAAIQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL ++     P++ +NP++++ SD     +  CLS+PDY ADV+R   + V  +D   
Sbjct: 60  IIDLSENRDE--PLILVNPEVVSGSDKAMGQEG-CLSVPDYYADVERFTSVVVSALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NQITLESDDFLAIVMQHEIDHLSGNLFIDYLSPLKRQMAMKKVKKYLK 164


>gi|325280501|ref|YP_004253043.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
 gi|324312310|gb|ADY32863.1| Peptide deformylase [Odoribacter splanchnicus DSM 20712]
          Length = 184

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V++  PILR++S  I     ++   I ++ + M   DG+GLAA Q+G   R+ V+
Sbjct: 1   MFLPIVVYGHPILRKISEDITPEYPELDKFIRDLFQTMDEADGVGLAAPQVGRNIRIFVV 60

Query: 62  D-----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           D       D   +     FIN  I+    D     EGC+SIP    DVKR   I + YMD
Sbjct: 61  DANAFEEMDPDCKGFRKAFINAHILERWGDEISRNEGCISIPGIHEDVKRPNCIRISYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              Q       G+ A  +QHE DHL GILF DHLS LK+ ++  K++ +   +
Sbjct: 121 EQGQEHEEEFCGIKAWIIQHEYDHLEGILFTDHLSALKKRILKNKLNNISTGK 173


>gi|28900639|ref|NP_800294.1| peptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365515|ref|ZP_05778052.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|260877578|ref|ZP_05889933.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|260895409|ref|ZP_05903905.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|260901682|ref|ZP_05910077.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|31076642|sp|Q87I22|DEF2_VIBPA RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085281|gb|EFO34976.1| peptide deformylase [Vibrio parahaemolyticus Peru-466]
 gi|308090907|gb|EFO40602.1| peptide deformylase [Vibrio parahaemolyticus AN-5034]
 gi|308108907|gb|EFO46447.1| peptide deformylase [Vibrio parahaemolyticus AQ4037]
 gi|308114324|gb|EFO51864.1| peptide deformylase [Vibrio parahaemolyticus K5030]
 gi|328470579|gb|EGF41490.1| peptide deformylase [Vibrio parahaemolyticus 10329]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S I  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|323173923|gb|EFZ59551.1| peptide deformylase [Escherichia coli LT-68]
 gi|325498855|gb|EGC96714.1| hypothetical protein ECD227_2952 [Escherichia fergusonii ECD227]
          Length = 164

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +   + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           DGLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 DGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|224369791|ref|YP_002603955.1| Def [Desulfobacterium autotrophicum HRM2]
 gi|259645178|sp|C0QI55|DEF_DESAH RecName: Full=Peptide deformylase; Short=PDF; AltName:
           Full=Polypeptide deformylase
 gi|223692508|gb|ACN15791.1| Def [Desulfobacterium autotrophicum HRM2]
          Length = 174

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/169 (37%), Positives = 96/169 (56%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +  +P  +L + +  +E I+  ++ L+++M E M+   G+GLAA Q+G   R++V
Sbjct: 1   MALLEIYQYPAAVLLKKALQVETIDDTVIKLVNDMGETMFEAPGVGLAAPQVGQSRRIIV 60

Query: 61  IDLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
            + Q  +   N         INP+II  S       E CLS+PDY  +VKR   +TVR +
Sbjct: 61  YNPQAGSSNANEDTKEFKALINPEIIASSGSIVSENEACLSVPDYSCNVKRFETVTVRGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +   +     A GLLA  +QHE+DHL+GIL+ID +S LKR+M  KK+ K
Sbjct: 121 NLEGKKLEFDAQGLLAVIMQHEIDHLDGILYIDRISTLKRNMYKKKVRK 169


>gi|154244580|ref|YP_001415538.1| peptide deformylase [Xanthobacter autotrophicus Py2]
 gi|154158665|gb|ABS65881.1| peptide deformylase [Xanthobacter autotrophicus Py2]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + ++ FPD  LR V+ P+   +  + NL+ ++L+ + +  GIG+ A  IG+  R+VV
Sbjct: 1   MTARQIITFPDARLRSVAAPVTVFDDALANLVADLLDTLRAAPGIGITAPHIGIGKRVVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ++L      +    +INP+I+  S +   + EG +S+P    +V+R A + VRY D +  
Sbjct: 61  LELSAEDGVRA---YINPQIVWASAELIRHAEGSVSMPGVTEEVERPARVHVRYQDLSGA 117

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
             +  ADGL A C QHE+D L+G+ +I  LSRLKR+ + K+  K
Sbjct: 118 EHLEEADGLRAVCHQHEIDQLDGVFWIQRLSRLKRERVIKRYEK 161


>gi|312884517|ref|ZP_07744221.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367829|gb|EFP95377.1| peptide deformylase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 171

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M   P++  PDP L+  +  +   +  + + ID+ML+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLPILTTPDPRLKYEAEQVTDFDK-VQSFIDDMLDTLYSTANGIGLAATQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL +   +      +    +    +  + QEGCLS+PDY ADV+R   + V+  D   
Sbjct: 60  VIDLSEARDQPL---ILVNPKVVCGKNREMGQEGCLSVPDYYADVERFTSVVVQAQDRLG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
               + +D  LA  +QHE+DHL+G LFID+LS LKR M  KK+ K ++
Sbjct: 117 NAIKVESDDFLAIVMQHEIDHLSGRLFIDYLSPLKRQMALKKVKKHIK 164


>gi|295394412|ref|ZP_06804636.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972764|gb|EFG48615.1| peptide deformylase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 193

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 6/170 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V++ +P+L R + P+ +   ++  L+ +M E + +++G+GLAA QIGV  ++ V
Sbjct: 1   MAIHPIVVYGEPVLHRKADPVTEFGDELHTLVADMYETLTASNGVGLAAPQIGVGKQIYV 60

Query: 61  IDLQDHAHRKNPMVFINPKII------TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
            D  D              ++      T + D S   EGCLS+P     +KR+  +TV  
Sbjct: 61  YDADDEVAGVRRRGVFINPVLVASKVPTTNPDPSEDTEGCLSVPVLDYPLKRADKVTVTG 120

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           +D N Q   +  +G  A  +QHE DHL+G L++D L         K+  K
Sbjct: 121 VDENNQPVSLSVEGWFARIMQHEFDHLHGTLYVDRLDTRWAKRWKKEQKK 170


>gi|229820291|ref|YP_002881817.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
 gi|229566204|gb|ACQ80055.1| peptide deformylase [Beutenbergia cavernae DSM 12333]
          Length = 162

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + + +  DP+LR     I  I+  +  L+D+++E +      GLAA QIGV  R   
Sbjct: 1   MAFRDIRVVGDPVLRTPCEEITVIDDRVRTLVDDLVETVDHEGRAGLAANQIGVSLRAFS 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            ++ D        V     +    D +    EGCLS+P       R+ +  V   D +  
Sbjct: 61  WNIDDEVG----YVLNPRIVELSEDTYQDGDEGCLSVPGLWFPTNRAWYAKVVGTDLDGA 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
             ++    L+A CLQHE+DHL+G+L+ID L R  R    + + 
Sbjct: 117 EVVVEGTELMARCLQHEVDHLDGMLYIDRLERSVRKKAMRAIR 159


>gi|145590257|ref|YP_001156854.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048663|gb|ABP35290.1| peptide deformylase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 171

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/168 (38%), Positives = 110/168 (65%), Gaps = 2/168 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ +PD  L +V++P+ ++++ I  ++ +M + MY   G+GLAA Q+ +  R+VV
Sbjct: 1   MALLTVLCYPDQRLHKVAKPVAQVDARIQKIVADMADTMYDAPGVGLAATQVDIHERIVV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           ID+ D  +     VFINP+I+  S +   ++EGCLS+P++  +V+R A I V+ ++   +
Sbjct: 61  IDVSDDQNELM--VFINPEIVWASPEKKSWREGCLSVPEFYDEVERPAEIRVKALNLKGE 118

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
              + ADGLLA CLQHELDHL G +F+++LS LK+  I++KM K ++ 
Sbjct: 119 EFELEADGLLAVCLQHELDHLQGKVFVEYLSMLKQVRISQKMKKRLKE 166


>gi|256832092|ref|YP_003160819.1| peptide deformylase [Jonesia denitrificans DSM 20603]
 gi|256685623|gb|ACV08516.1| peptide deformylase [Jonesia denitrificans DSM 20603]
          Length = 215

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 13/171 (7%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+VI  DP+LR+ +  + + +  ++ L+ +M + M  ++G+GLAA QIGV  R+ V 
Sbjct: 1   MIHPIVIDGDPVLRQRAAEVTEFDDALVQLVADMYDTMRVSNGVGLAAPQIGVGQRIFVF 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEG-------------CLSIPDYRADVKRSA 108
           D  D   ++  +V     +I         +               CLS P    + KR  
Sbjct: 61  DAPDEDEQRRGVVVNPSLMIVQRPPRFALKGEGKRPPKSLTDVEGCLSFPGPDFEAKRHY 120

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159
            + V   D + +  +I  +G  A  LQHE DHL+G+L++D L    +    
Sbjct: 121 AVRVTGWDEHGEPVVIDGEGWFARVLQHEYDHLDGLLYVDRLKGRDKAEAR 171


>gi|322421893|ref|YP_004201116.1| peptide deformylase [Geobacter sp. M18]
 gi|320128280|gb|ADW15840.1| peptide deformylase [Geobacter sp. M18]
          Length = 168

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 102/168 (60%), Gaps = 4/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M  KP+V +PDPIL++V  P++ I+ +I  L++++++ M++    +G+AA Q+GV  R+ 
Sbjct: 1   MAVKPIVTYPDPILKQVCPPVQAIDVEIRQLVEDLVDTMHAGPGSVGVAAPQVGVARRVC 60

Query: 60  VIDLQDHAHRKNPMV---FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
           VID+  + H K        +    I      +V +EGC+S+PDY  DV+R+  +T+R+ +
Sbjct: 61  VIDVSKNRHGKENNHGLLLMINPEILAKSGAAVMREGCMSVPDYTGDVERATELTLRFTE 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            +   +   A G  A  +QHE+DHL+G+LF+D ++ LK  +  +K  K
Sbjct: 121 PDGGVREFEASGFEAVAIQHEMDHLDGLLFLDRIASLKTGLFRRKSYK 168


>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
 gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
          Length = 258

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 92/169 (54%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
               +V +PDPILR  ++ I+  + ++  L+D M +VMY TDGIGL+A Q+G+  +L+V 
Sbjct: 65  APLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVGINVQLMVF 124

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           +  D     + +V +NP++  +S    ++ EGCLS P   ADVKR   + +   D N   
Sbjct: 125 NPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGCLSFPGIYADVKRPESVKIDARDINGAR 184

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
             +   GL A   QHE DHL GILF D ++    D I   +  L +  +
Sbjct: 185 FTVNLSGLPARVFQHEFDHLQGILFFDRMTEEVLDSIRPGLQALEKKYE 233


>gi|258655021|ref|YP_003204177.1| peptide deformylase [Nakamurella multipartita DSM 44233]
 gi|258558246|gb|ACV81188.1| peptide deformylase [Nakamurella multipartita DSM 44233]
          Length = 190

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M  +P+VI  +P+L R +RP+ +    ++  LI +M E   +  G GLAA QIG   RL 
Sbjct: 1   MTIRPIVICGEPVLHRPTRPVTEFGTPELNTLIQDMFETNEAAHGAGLAANQIGDDRRLF 60

Query: 60  VIDLQDHAHRKNPMVFINP----KIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           + D  D   R+   +         I T   D     EGCLS+P       R+ +  V+  
Sbjct: 61  IYDCPDQGSRRRGYIINPTIETSPIPTNMPDPDDDSEGCLSVPGENFPTGRADWARVKGF 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D + +   +   G  A CLQHE DHL+G L+ID L    +    K + +
Sbjct: 121 DSDGEPIEVEGTGFFARCLQHETDHLDGHLYIDRLIGKNQKRAFKAVRE 169


>gi|197117031|ref|YP_002137458.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
 gi|197086391|gb|ACH37662.1| polypeptide formylmethionine deformylase [Geobacter bemidjiensis
           Bem]
          Length = 172

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+ I  ++  +  +EGCLS+P + A+V+R A I V+ ++   + 
Sbjct: 61  DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLEGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|319955771|ref|YP_004167034.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
 gi|319418175|gb|ADV45285.1| peptide deformylase [Nitratifractor salsuginis DSM 16511]
          Length = 177

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + +V++PD  L+ +S+P+E+ + ++  L+D+M E M + +G+GLAA+Q+ V  R ++I
Sbjct: 1   MIRDIVVYPDKRLKEISQPVERFDEELHTLLDDMYETMIAKNGVGLAAIQVAVPVRALII 60

Query: 62  DLQDHAHRKNPMVFIN--------PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVR 113
           ++      ++P V             +I  ++  + YQEGCLS+P Y  +V+R   + + 
Sbjct: 61  NVPVDTDSEDPRVQQPKENTLEVINPVILDAEGKTRYQEGCLSVPGYFEEVERYKAVRIE 120

Query: 114 YMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           Y D   +  I+  D  LA  +QHE+DHL G LFI+ LS LKR    K+  K ++ +
Sbjct: 121 YQDRYGEKHILEDDDFLAIAVQHEMDHLEGRLFIEKLSLLKRKKFEKEWKKRLRGK 176


>gi|253699291|ref|YP_003020480.1| peptide deformylase [Geobacter sp. M21]
 gi|251774141|gb|ACT16722.1| peptide deformylase [Geobacter sp. M21]
          Length = 172

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 99/163 (60%), Gaps = 1/163 (0%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +PDP L++ S P+  I      L  +M E MY   G+GLAA QIGV  R++VI
Sbjct: 1   MIRTILTYPDPELKKRSLPVTVITDKTRELARDMAETMYDAPGVGLAAPQIGVHQRIIVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D+         +V INP+ I  ++  +  +EGCLS+P + A+V+R A I V+ ++ + + 
Sbjct: 61  DVSGKDETPELIVAINPE-IVHAEGEAFEEEGCLSVPKFSANVRRHARIVVKALNLDGEE 119

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
               AD LL+   QHE+DHL+G+LFIDHLS LK+ +  K+  +
Sbjct: 120 VTFRADDLLSIAFQHEIDHLDGVLFIDHLSPLKKGIFRKRYQR 162


>gi|68171578|ref|ZP_00544952.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658603|ref|YP_506903.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999004|gb|EAM85681.1| Formylmethionine deformylase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88600060|gb|ABD45529.1| peptide deformylase [Ehrlichia chaffeensis str. Arkansas]
          Length = 188

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 100/184 (54%), Gaps = 17/184 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    +V  PD  L   S  +EK++  I  L+D+M E M++  G+GLAAVQ+GV  R++V
Sbjct: 1   MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILV 60

Query: 61  IDLQDHAHRKN-----------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           +++ +                       P   INPKI+  S +    +EGCLS+P Y   
Sbjct: 61  MNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDY 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           + R   I V+Y+D N    II A G LA CLQHE+DHLNG +F+ +LS+ KRD   +K+ 
Sbjct: 121 IVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 180

Query: 164 KLVQ 167
           K  +
Sbjct: 181 KKER 184


>gi|111219523|ref|YP_710317.1| peptide deformylase 3 (PDF 3) (polypeptide deformylase 3) [Frankia
           alni ACN14a]
 gi|111147055|emb|CAJ58702.1| Peptide deformylase 3 (PDF 3) (Polypeptide deformylase 3) [Frankia
           alni ACN14a]
          Length = 224

 Score =  128 bits (322), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKI-NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             + + +  +P+L R  R I +    ++  LID+M   MY  +G+GLAA QI V   L V
Sbjct: 40  TIRRITVVGEPVLHRPCRKITEFGTPELAALIDDMFATMYGAEGVGLAANQIDVDAALFV 99

Query: 61  IDLQDHAHRKNPMVFINPKII---TFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
            D  D    ++     NP++             +EGCLS+P    +V R     VR  D 
Sbjct: 100 YDCTDEDGVRHVGHLANPELEESDPAERRLVKGEEGCLSVPGAYMEVARLERAAVRGQDA 159

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQL 168
                 +   G  A CLQHE DHL G L++D LS   R    K+M +  + 
Sbjct: 160 TGAPLRLEGTGYFARCLQHETDHLYGGLYLDRLSSRGRKKALKEMEERAEE 210


>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
 gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
 gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
 gi|23396575|sp|Q9KN16|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
 gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
 gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
 gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
 gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
 gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
 gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
 gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
 gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
 gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
 gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
 gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
 gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
 gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
 gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
 gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|318060209|ref|ZP_07978932.1| peptide deformylase [Streptomyces sp. SA3_actG]
 gi|318079746|ref|ZP_07987078.1| peptide deformylase [Streptomyces sp. SA3_actF]
          Length = 210

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
            P+ +  +P+L +    + +   ++  L+D+M     + +G+GLAA Q+GV  ++ V D 
Sbjct: 36  LPITVVGNPVLHKECADVTEFGPELAKLVDDMFASQRAAEGVGLAANQVGVGLKVFVYDC 95

Query: 64  QDHAHRKNPMVFINPKIITFS---DDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           QD    ++  V  NPK+              EGCLS+P   A   R+ +  V   D +  
Sbjct: 96  QDDQGVRHVGVVCNPKLRDLPAELRTLDDSNEGCLSVPGAYAATPRTEYAEVTGQDEHGN 155

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +   G  A CLQHE DHL G L++D LS+  R    K+M++
Sbjct: 156 AIKVRGTGYFARCLQHETDHLYGYLYLDRLSKRDRKDALKQMAE 199


>gi|153808041|ref|ZP_01960709.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
 gi|149129650|gb|EDM20864.1| hypothetical protein BACCAC_02327 [Bacteroides caccae ATCC 43185]
          Length = 184

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++  P+LR+V+  I     ++  LI NM E M   DG+GLAA QIG+  R+V I
Sbjct: 1   MILPIYVYGQPVLRKVAEDITPDYPNLKELIANMFETMVHADGVGLAAPQIGLPIRVVTI 60

Query: 62  DLQDHAHRKNPMV-----FINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMD 116
            L   +            +INP I+    +    +EGCLS+P     VKR   I V+YMD
Sbjct: 61  TLDPLSEDYPEFKGFNKAYINPHILEIGGEEVSMEEGCLSLPGIHETVKRGNKIRVKYMD 120

Query: 117 CNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +        +G LA  +QHE DHL+G +FIDH+S L++ MI  K++ +++ +
Sbjct: 121 EDFVEHEEEVEGYLARVMQHEFDHLDGKMFIDHISALRKQMIKGKLNTMLKGK 173


>gi|313674138|ref|YP_004052134.1| peptide deformylase [Marivirga tractuosa DSM 4126]
 gi|312940836|gb|ADR20026.1| peptide deformylase [Marivirga tractuosa DSM 4126]
          Length = 185

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 4/172 (2%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+V +  P+L+   + I+K   D+  L+D+M E MY+ +G+GLAA QIG   RL VI
Sbjct: 1   MIYPIVAYGHPVLKTKGKDIDKGEIDVKTLVDDMFETMYNANGVGLAAPQIGKSLRLFVI 60

Query: 62  D----LQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDC 117
           D      +    K    FINP+I+    +   ++EGCLSIP+ R DV R   I ++Y D 
Sbjct: 61  DTDPIDDEEDQPKVKQAFINPQILEEEGEEWAFEEGCLSIPNIREDVNRKPTIRIKYFDE 120

Query: 118 NAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           N        DG +A  +QHE DH+ GILF DH+S  K+ ++  K++ + + +
Sbjct: 121 NWNEHEKEYDGFVARVIQHEYDHIEGILFTDHVSAFKKRILKGKLANISKGK 172


>gi|268316440|ref|YP_003290159.1| peptide deformylase [Rhodothermus marinus DSM 4252]
 gi|262333974|gb|ACY47771.1| peptide deformylase [Rhodothermus marinus DSM 4252]
          Length = 189

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 9/159 (5%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           +  P+ ++ DPILR  ++P+   + ++  L+D+M+E M++  GIGLAA Q+G   R+ V+
Sbjct: 1   MVLPIHVYGDPILRERAQPVAADSPELQQLLDDMVETMHAASGIGLAAPQVGRRERVFVV 60

Query: 62  DLQD---------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITV 112
           DL                 PM FINP+I+  S++   ++EGCLSIPD R  V+R   + +
Sbjct: 61  DLTPMKEELEAEGETLPPMPMFFINPEIVWTSEEQCSFEEGCLSIPDVREVVERPVAVRI 120

Query: 113 RYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLS 151
           RY+D   + Q + A G+LA  +QHE DHL GILFID +S
Sbjct: 121 RYLDRQFRPQELEARGMLARVIQHEYDHLEGILFIDRIS 159


>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
 gi|39930924|sp|Q7MCQ2|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
           Full=Polypeptide deformylase 1
 gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y   +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++         +    +    +  + QEGCLS+PDY ADV+R   + V  +D N 
Sbjct: 60  VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRNG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KELRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|27367269|ref|NP_762796.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|320159078|ref|YP_004191456.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
 gi|31076649|sp|Q8D5P5|DEF2_VIBVU RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
           Full=Polypeptide deformylase 2
 gi|27358838|gb|AAO07786.1| peptide deformylase [Vibrio vulnificus CMCP6]
 gi|319934390|gb|ADV89253.1| peptide deformylase [Vibrio vulnificus MO6-24/O]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYS-TDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++LE +Y   +G+GLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKEVTDV-AAVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL ++         +    +    +  + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSENRDEPL---VLVNPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K  +LR
Sbjct: 117 KPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLR 166


>gi|259417997|ref|ZP_05741916.1| peptide deformylase [Silicibacter sp. TrichCH4B]
 gi|259346903|gb|EEW58717.1| peptide deformylase [Silicibacter sp. TrichCH4B]
          Length = 169

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 1/162 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M   P+V +PDP L  +  P+ +   D+  LI NMLE MY   G GLAA Q+GVL RL V
Sbjct: 1   MSLLPIVKWPDPRLTAICAPVAE-GEDLSGLIANMLETMYDAPGRGLAAPQVGVLKRLFV 59

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+      +NP+V +NP I+  + + +  +EGCLSIPD    V R   I VR+ D    
Sbjct: 60  MDVDWKDGARNPVVMVNPDILWRATEIAEGEEGCLSIPDVTTPVTRPTEIRVRWYDAKNT 119

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKM 162
                 DG  A C+QHE DHL+G +  DHLS   R    +  
Sbjct: 120 VNEQCFDGFAARCIQHEYDHLDGRVTFDHLSPEMRRTAQQHY 161


>gi|229526222|ref|ZP_04415626.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
 gi|254286639|ref|ZP_04961594.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|150423223|gb|EDN15169.1| polypeptide deformylase [Vibrio cholerae AM-19226]
 gi|229336380|gb|EEO01398.1| peptide deformylase [Vibrio cholerae bv. albensis VL426]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +   ++  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGNNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|313648791|gb|EFS13231.1| peptide deformylase [Shigella flexneri 2a str. 2457T]
          Length = 164

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/163 (38%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 7   VIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDH 66
           +  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+ ++
Sbjct: 2   LHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSEN 61

Query: 67  AHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYA 126
                  + +    +      +  +EGCLSIP+ RA V R+  + +R +D + +   + A
Sbjct: 62  RD---ERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEA 118

Query: 127 DGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +GLLA C+QHE+DHL G LF+D+LS LK+  I +K+ KL +L+
Sbjct: 119 EGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK 161


>gi|296273945|ref|YP_003656576.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
 gi|296098119|gb|ADG94069.1| peptide deformylase [Arcobacter nitrofigilis DSM 7299]
          Length = 170

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 2/170 (1%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ +P+ +LR  S+ + K + ++  L+D+M E M +  G+GLAA+Q+ V   +++I
Sbjct: 1   MVREVITYPNKLLREKSKDVVKFDDELHTLLDDMYETMIAQSGVGLAAIQVAVPLNVLII 60

Query: 62  DLQDHAHRKNPMVFIN--PKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            + D    +     I      IT  D   V+ EGCLS+P +  DVKR+  I V Y D   
Sbjct: 61  LIPDENDIQAKDSLIEAINPKITHKDGIQVFTEGCLSVPGFNEDVKRAQHIIVEYQDRFG 120

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
            +Q +  +  LA   QHE+DHL G LFI+ LS +KR    K+  K  + +
Sbjct: 121 NNQKMETEDFLAVAWQHEMDHLEGHLFIEKLSLMKRKKFEKEYKKSQKSK 170


>gi|218290476|ref|ZP_03494596.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239497|gb|EED06692.1| peptide deformylase [Alicyclobacillus acidocaldarius LAA1]
          Length = 167

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 2/159 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +    DP+LR+ ++ + +    I  L+D+M E MY  DGIGLAA QIG+L RLVV
Sbjct: 1   MAIRIIRKGEDPVLRQKAQVVTQFTPAIHRLLDDMAETMYDADGIGLAANQIGILKRLVV 60

Query: 61  IDLQDHAHRKNPMVFINPKI--ITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCN 118
           ID+Q          +I      I         +E CLS+P     V+R+A++ VR  +  
Sbjct: 61  IDVQPKEDSFQKRAWIELVNPEIVARSGVQREREACLSLPGLSGVVERAAYVRVRAQNRY 120

Query: 119 AQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDM 157
            +   I    LLA CLQHE+DHL+GILF D+L   + + 
Sbjct: 121 GEFFEIEGRDLLARCLQHEIDHLDGILFTDYLRPEEIER 159


>gi|269968185|ref|ZP_06182216.1| peptide deformylase [Vibrio alginolyticus 40B]
 gi|269827183|gb|EEZ81486.1| peptide deformylase [Vibrio alginolyticus 40B]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKSQ 166


>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
 gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|254229199|ref|ZP_04922618.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262395549|ref|YP_003287402.1| peptide deformylase [Vibrio sp. Ex25]
 gi|151938284|gb|EDN57123.1| peptide deformylase [Vibrio sp. Ex25]
 gi|262339143|gb|ACY52937.1| peptide deformylase [Vibrio sp. Ex25]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYST-DGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  +  + S +  LID+MLE +Y+T +GIGLA+ Q+G    +V
Sbjct: 1   MAVLEILSIPDPRLKVKAEKVTDV-STVQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VID+ D  +   P++ +NP++++  +     +  CLS+P+Y ADV+R   + V  +D + 
Sbjct: 60  VIDISDERND--PLILVNPEVVSGENKALGQEG-CLSVPEYYADVERYTSVVVSALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
               I +D  LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ +
Sbjct: 117 NPMTIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQ 166


>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
          Length = 273

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 81  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|15241461|ref|NP_196970.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|30684999|ref|NP_850821.1| PDF1B (PEPTIDE DEFORMYLASE 1B); iron ion binding / peptide
           deformylase [Arabidopsis thaliana]
 gi|39932734|sp|Q9FUZ2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
           Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
           deformylase; Flags: Precursor
 gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
 gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
 gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
 gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
 gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
          Length = 273

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/167 (35%), Positives = 91/167 (54%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V + 
Sbjct: 81  LKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNP 140

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
                    +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +   
Sbjct: 141 AGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFS 200

Query: 124 IYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           I    L A   QHE DHL G+LF D ++    D I +++  L +  +
Sbjct: 201 ISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247


>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
 gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 5/155 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  + +V  PDPILR  +  + K NS++  L+D+M + MY  DG+GLAA Q+G+  R++V
Sbjct: 1   MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D  D       +  INP+II    +   Y EGCLSIP  + DV+R  +I +R  D N  
Sbjct: 61  MDCGDG-----LIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGN 115

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKR 155
              + AD LL+ C QHE+DHLNG+LFID   ++ +
Sbjct: 116 VVELEADDLLSRCAQHEIDHLNGVLFIDVADKVYK 150


>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
 gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
          Length = 169

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 94/168 (55%)

Query: 2   VKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVI 61
           + + ++ FP P+L+  ++ ++ I+ D+ +++ +M E MY  +G+GLAA QIG+   ++VI
Sbjct: 1   MVREIIKFPHPVLKMPTQKVDVIDKDVQSIVGDMFETMYHAEGVGLAANQIGISLSIMVI 60

Query: 62  DLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQH 121
           D             +    +  ++    Y+EGCLS P    +V R + + V+ +D N + 
Sbjct: 61  DTSKKEDSPLLKAVMINPELLEAEGEVKYKEGCLSFPGLSVEVSRYSKVKVKALDINGEE 120

Query: 122 QIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           ++   +G  A   QHE+DHL GI FID ++ +KR +   K +KL + +
Sbjct: 121 KLYLLEGFPAIVFQHEMDHLMGITFIDRVNGIKRRLALDKYAKLQKEK 168


>gi|317125290|ref|YP_004099402.1| peptide deformylase [Intrasporangium calvum DSM 43043]
 gi|315589378|gb|ADU48675.1| peptide deformylase [Intrasporangium calvum DSM 43043]
          Length = 215

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 5/169 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M  +P+VI  +P+L R +  + + + ++  L+ +M E   + +G+GLAA QIGV  R+ +
Sbjct: 1   MAVRPIVISGEPVLHRSAALVTEFDDELRQLVGDMHETNDAANGVGLAAPQIGVGLRVFI 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQ-----EGCLSIPDYRADVKRSAFITVRYM 115
             + +          INP + T              EGCLS+P     +KR+    V  +
Sbjct: 61  WKMDNEDGVPARGHIINPTVRTSRIPQERPDPREETEGCLSVPGESFPLKRAERAHVVGL 120

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
           D         A G  A C+QHE DHLNG L++D L   +     K + +
Sbjct: 121 DLEQNRVEFDATGWFARCMQHEYDHLNGTLYVDRLDDRQAKKARKAVKR 169


>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
 gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRVQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+         +    +    +  + QEGCLS+PDY ADV+R   + V  +D + 
Sbjct: 60  VIDLSDNRDEPM---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDRDG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
 gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 98/170 (57%), Gaps = 5/170 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP LR  S+ +  + + +  LID++L+ +Y + +GIGLAA Q+G    +V
Sbjct: 1   MAVLEILTAPDPRLRLQSKQVTDV-ASVQTLIDDLLDTLYATDNGIGLAAPQVGREEAIV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           VIDL D+  +      +    +    +  + QEGCLS+PDY ADV+R   + V  +D   
Sbjct: 60  VIDLSDNRDQPL---VLINPKVVSGSNKEMGQEGCLSVPDYYADVERYTSVVVEALDREG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
           +   I     LA  +QHE+DHL+G LFID+LS LK+ M  KK+ K V+ R
Sbjct: 117 KPLCIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHVKNR 166


>gi|260774331|ref|ZP_05883246.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
 gi|260611292|gb|EEX36496.1| peptide deformylase [Vibrio metschnikovii CIP 69.14]
          Length = 171

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 5/168 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMY-STDGIGLAAVQIGVLYRLV 59
           M    ++  PDP L+  +  ++ I   +  LID+MLE +Y + +GIGLA+VQ+G    +V
Sbjct: 1   MAVLEILTAPDPRLKITAEKVQDI-ESVQKLIDDMLETLYSTDNGIGLASVQVGRKEAVV 59

Query: 60  VIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
           +IDL D+  R  P++ INP++++ S+     +  CLS+PDY A+V+R   + V  +D   
Sbjct: 60  IIDLSDN--RDQPLILINPEVVSGSNKALGQEG-CLSVPDYYAEVERYTSVVVSALDRTG 116

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQ 167
           Q   I +D  LA  +QHE+DHL+G LFID++S LKR M  KK+ K V+
Sbjct: 117 QRITIESDDFLAIVMQHEIDHLSGNLFIDYISPLKRQMAMKKVKKYVK 164


>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
 gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
          Length = 197

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 95/175 (54%), G