RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62] (170 letters) >3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} (A:) Length = 171 Score = 177 bits (449), Expect = 9e-46 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 7/170 (4%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59 M++ ++ D L RV+ + + S + L+ +M E M + G+GLAA QI V +L+ Sbjct: 1 MIR-DIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLM 59 Query: 60 VIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114 V + A N +I SD+ EGCLSIP RA + R +I R Sbjct: 60 VFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRG 119 Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 + A+G A +QHE DHL G L+ + +S Sbjct: 120 FAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDDVLSY 169 >1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide deformylase, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum 3D7} (A:) Length = 188 Score = 175 bits (445), Expect = 3e-45 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +V +PDPILRR S + + ++ ++ M ++MY + GIGL+A Q+ + R++V Sbjct: 6 KDEIKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIV 65 Query: 61 IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119 + +N +FINP I+ S EGCLS P V+R + +++ Y D N Sbjct: 66 WNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDING 125 Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169 + G+ + QHE DHLNG LFID ++++ + + K+++L++ Sbjct: 126 YKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDY 175 >3cpm_A Peptide deformylase, chloroplast; alpha beta, hydrolase, iron, metal-binding, plastid, protein biosynthesis, transit peptide; 2.40A {Arabidopsis thaliana} (A:1-172) Length = 172 Score = 174 bits (443), Expect = 5e-45 Identities = 58/158 (36%), Positives = 85/158 (53%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 +V +PDPILR ++ I+ + ++ NL+D M +VMY TDGIGL+A Q+G+ +L+V Sbjct: 14 ETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMV 73 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 + +V +NPKI +SD + EGCLS P A+V R + + D + Sbjct: 74 FNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGE 133 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158 I L A QHE DHL G+LF D ++ D I Sbjct: 134 RFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 171 >1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} (A:) Length = 177 Score = 174 bits (442), Expect = 6e-45 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%) Query: 4 KPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + ++ DPILR++S P+ + + LI +M + M +G+GLAA QIG+L ++VV Sbjct: 3 RKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVV 62 Query: 61 IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115 + +D + +NP I + D S + EGCLS+P R V+R I +++M Sbjct: 63 VGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWM 122 Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170 D DG A QHE DHL GIL++D L K + + + D Sbjct: 123 DEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSHNVLD 177 >1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A (A:) Length = 197 Score = 172 bits (436), Expect = 3e-44 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M +V DP+L +R ++ + I +ID+M++VM G+GLAA QIGV R Sbjct: 1 MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60 Query: 58 LVVIDLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++V++ + MV +NP + S+ +++ EGCLS+ +RA Sbjct: 61 IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V+R + V D + + A G A LQHE DHL+G L++D + + Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 180 Query: 164 KLVQLR 169 L + Sbjct: 181 PLAEGC 186 >1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A* (A:) Length = 156 Score = 171 bits (434), Expect = 5e-44 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 4/160 (2%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ P+ +L + + ++ L+ +M E M DG+GLAA Q+GV ++ V Sbjct: 1 MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ D + INP I+ + V EGCLS P +V+R+ +I VR + + Sbjct: 61 VDVDDD---TGKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 ++ A+G LA +QHE+DHL+G+LF ++R + + Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENELE 156 >1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:) Length = 176 Score = 169 bits (430), Expect = 1e-43 Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 5/165 (3%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 + +F DP+LR+ ++P+ K + ++ I+ M+E MY DG+GLAA Q+G+ R V Sbjct: 11 HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFV 70 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +D+ + P+ INP+I+ + V +EG LS P+ +++RS I V+Y + + Sbjct: 71 MDVGN-----GPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGE 125 Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 + +G A QHE DHLNG+L ID +S KR ++ KK+ + Sbjct: 126 YVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDI 170 >3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal- binding, mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A (A:) Length = 183 Score = 167 bits (424), Expect = 7e-43 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57 M + DP+LR V+ P+E+ ++ L +++VM +GL+A Q+GV + Sbjct: 2 MSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 61 Query: 58 LVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 ++ ++L + R+ VF+NP + + EGC S+ + A Sbjct: 62 VLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLAC 121 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R + + +D N + + A G A +QHE+DHL G LFID + R Sbjct: 122 VPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD--SRTFTNVYWM 179 Query: 164 KL 165 K+ Sbjct: 180 KV 181 >1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} (A:1-157) Length = 157 Score = 164 bits (417), Expect = 6e-42 Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 M ++ FPDP LR +++P+E ++ + LID+M E MY GIGLAA Q+ V R+VV Sbjct: 13 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72 Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 +DL + P VFINP+ +++ YQEGCLS+P + +V R + ++ +D + Sbjct: 73 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 A+GLLA C+QHE DHLNG LF+ Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFV 157 >2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A (A:1-148) Length = 148 Score = 161 bits (409), Expect = 4e-41 Identities = 51/147 (34%), Positives = 93/147 (63%), Gaps = 4/147 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ +P ILR +S+ + ++ + +D+M E M +++GIGLAA+Q+G+ R+++I+L Sbjct: 3 LEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINL 62 Query: 64 QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 H+++ + INPK I +Y+EGCLS+P + +V+R + + Y + A+ Sbjct: 63 PQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAE 121 Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147 +++ A LLA +QHE+DHLNG+LF+ Sbjct: 122 VKVLEASELLAVAIQHEIDHLNGVLFV 148 >3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis} (A:22-180) Length = 159 Score = 160 bits (406), Expect = 9e-41 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 7/156 (4%) Query: 17 VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN----- 71 + +D+ LI M + M + +G+GLAA QIG RL V D Sbjct: 1 TVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGV 60 Query: 72 --PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129 V +I D EGCLS+P R+ + V +D + I GL Sbjct: 61 VINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGL 120 Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165 A LQHE HL+G L++D L + + Sbjct: 121 FARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSH 156 >2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus atcc 14579} PDB: 1lqy_A* (A:) Length = 185 Score = 158 bits (400), Expect = 4e-40 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-------------INSDIMNLIDNMLEVMYSTDGIGL 47 + K ++ DPILR V+ + I I + M E GIGL Sbjct: 3 LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGL 62 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRADV 104 AA QIGV +++ + + D NPKII+ S + + EGCLS+ + V Sbjct: 63 AAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYV 122 Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164 R ITV+ N + + GL A QHE+DHLNG++F DH+++ Sbjct: 123 PRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENPFAAPDDSKP 182 Query: 165 L 165 L Sbjct: 183 L 183 >2aia_A Peptide deformylase; hydrolase; HET: SB8; 1.70A {Streptococcus pneumoniae} PDB: 2ai7_A* 2aie_P* 1lm6_A 2os3_A* (A:) Length = 203 Score = 157 bits (398), Expect = 6e-40 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 24/189 (12%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLID-------------NMLEVMYSTDGIGL 47 + ++ +P LR V+ + SD ++ M E M G+GL Sbjct: 14 IDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGL 73 Query: 48 AAVQIGVLYRLVVIDLQD--------HAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97 AA Q+ + R++ + + + + NPKI++ S + EGCLS+ Sbjct: 74 AAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSV 133 Query: 98 P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156 + V R A +TV Y D + + I G + +QHE+DH+NGI+F D ++ Sbjct: 134 DRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF 193 Query: 157 MITKKMSKL 165 + + L Sbjct: 194 AVKDGLLIL 202 >2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A (A:1-143) Length = 143 Score = 156 bits (397), Expect = 1e-39 Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ Sbjct: 3 LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ +V INP+++ S + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 63 SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119 Query: 124 IYADGLLATCLQHELDHLNGILFI 147 + ADGLLA C+QHE+DHL G LF+ Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143 >1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli BL21} (A:1-143) Length = 143 Score = 156 bits (397), Expect = 1e-39 Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%) Query: 4 KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63 ++ PD LR+V++P+E++N++I ++D+M E MY+ +GIGLAA Q+ + R++VID+ Sbjct: 3 LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62 Query: 64 QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123 ++ +V INP+++ S + +EGCLSIP+ RA V R+ + +R +D + + Sbjct: 63 SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119 Query: 124 IYADGLLATCLQHELDHLNGILFI 147 + ADGLLA C+QHE+DHL G LF+ Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143 >1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} (A:) Length = 194 Score = 154 bits (389), Expect = 7e-39 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 17/182 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYST------------DGIGL 47 + K ++ P LR+ + +E + + + M E + ++ G+GL Sbjct: 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGL 72 Query: 48 AAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRAD 103 AA QI + R++ + + D + + +NPKI++ S + EG LS+ + Sbjct: 73 AAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGL 132 Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163 V R IT++ D + G A QHE+DHLNG++F DH+ + Sbjct: 133 VHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAV 192 Query: 164 KL 165 ++ Sbjct: 193 EV 194 >2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A (A:) Length = 188 Score = 153 bits (387), Expect = 1e-38 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 20/185 (10%) Query: 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGL 47 + K ++ +P LR V+ + I + L ++ML + ++ +GL Sbjct: 2 ITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGL 61 Query: 48 AAVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSVY--QEGCLSIP-DY 100 AA Q+ + R++ + + + V NPKI++ S EGCLS+ D Sbjct: 62 AAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDV 121 Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160 V R ITV Y D + + A +QHE+DH+NGI+F DH+++ + + Sbjct: 122 PGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALKE 181 Query: 161 KMSKL 165 + + Sbjct: 182 GVLVI 186 >1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} (A:1-156) Length = 156 Score = 144 bits (364), Expect = 8e-36 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60 MV P+ ++ DP+LRR +RP+E + I L ++MLE M+ G+GLAA QIG+ RL V Sbjct: 1 MVY-PIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFV 58 Query: 61 IDLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSA 108 + V NP I + EG LS+P ++ V R+ Sbjct: 59 AVEYADEPEGEEERPLRELVRRVYVVANPVITY-REGLVEGTEGXLSLPGLYSEEVPRAE 117 Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147 I V Y D + +++ +G +A QHE+DHL+GILF Sbjct: 118 RIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFF 156 >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP} (A:143-274) Length = 132 Score = 27.4 bits (60), Expect = 1.3 Identities = 7/61 (11%), Positives = 11/61 (18%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+G V VI + + + D Sbjct: 15 GMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 74 Query: 104 V 104 V Sbjct: 75 V 75 >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} (A:137-268) Length = 132 Score = 27.0 bits (59), Expect = 1.5 Identities = 8/61 (13%), Positives = 17/61 (27%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+GL A Q +I A + + + + + + + Sbjct: 16 GVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 75 Query: 104 V 104 V Sbjct: 76 V 76 >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* (A:137-268) Length = 132 Score = 24.7 bits (53), Expect = 7.2 Identities = 7/61 (11%), Positives = 13/61 (21%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103 G+G A Q +I + + V + + Sbjct: 16 GVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 75 Query: 104 V 104 V Sbjct: 76 V 76 >1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} (A:1-16,A:198-408) Length = 227 Score = 24.5 bits (53), Expect = 8.0 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 11/76 (14%) Query: 61 IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120 I D A + I D F A R+ T + C + Sbjct: 27 ITYNDDALVHVAELLS--DIAAGRDGFGFVPP---------AIRTRALEATNAAIHCIVE 75 Query: 121 HQIIYADGLLATCLQH 136 Q++ L QH Sbjct: 76 TQVVQDGKRLGWGQQH 91 >3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli} (A:1-87) Length = 87 Score = 24.4 bits (53), Expect = 8.1 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 47 LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIPDYRA 102 L + + YRL+ +DL + + I+P KI D LS+ + A Sbjct: 17 LFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGA 74 >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} (A:166-340) Length = 175 Score = 24.3 bits (52), Expect = 9.3 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 4/93 (4%) Query: 44 GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRA 102 +GLAA L V+ + D + I S D ++++ + + Sbjct: 31 PVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 90 Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135 D A V + H+ + Sbjct: 91 DC---AVDAVGFEARGHGHEGAKHEAPATVLNS 120 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.327 0.143 0.418 Gapped Lambda K H 0.267 0.0612 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,312,808 Number of extensions: 57349 Number of successful extensions: 198 Number of sequences better than 10.0: 1 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 33 Length of query: 170 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 88 Effective length of database: 2,184,039 Effective search space: 192195432 Effective search space used: 192195432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 51 (23.7 bits)