RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780297|ref|YP_003064710.1| peptide deformylase
[Candidatus Liberibacter asiaticus str. psy62]
         (170 letters)



>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas
           oryzae PV. oryzae KACC10331, hydrolase; 2.60A
           {Xanthomonas oryzae PV} (A:)
          Length = 171

 Score =  177 bits (449), Expect = 9e-46
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 7/170 (4%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSD-IMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLV 59
           M++  ++   D  L RV+  +  + S  +  L+ +M E M +  G+GLAA QI V  +L+
Sbjct: 1   MIR-DIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAPQIAVDLQLM 59

Query: 60  VIDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRY 114
           V   +       A         N +I   SD+     EGCLSIP  RA + R  +I  R 
Sbjct: 60  VFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRYIRYRG 119

Query: 115 MDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
              +       A+G  A  +QHE DHL G L+   +           +S 
Sbjct: 120 FAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDDVLSY 169


>1rl4_A Formylmethionine deformylase; crystal engineering, drug
           design, malaria, PDF, peptide deformylase, hydrolase;
           HET: BRR BL5; 2.18A {Plasmodium falciparum 3D7} (A:)
          Length = 188

 Score =  175 bits (445), Expect = 3e-45
 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 1/170 (0%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
             +  +V +PDPILRR S  +   + ++  ++  M ++MY + GIGL+A Q+ +  R++V
Sbjct: 6   KDEIKIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIV 65

Query: 61  IDLQD-HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNA 119
            +        +N  +FINP I+  S       EGCLS P     V+R + +++ Y D N 
Sbjct: 66  WNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDING 125

Query: 120 QHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLR 169
              +    G+ +   QHE DHLNG LFID ++++ +  +  K+++L++  
Sbjct: 126 YKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRDY 175


>3cpm_A Peptide deformylase, chloroplast; alpha beta, hydrolase,
           iron, metal-binding, plastid, protein biosynthesis,
           transit peptide; 2.40A {Arabidopsis thaliana} (A:1-172)
          Length = 172

 Score =  174 bits (443), Expect = 5e-45
 Identities = 58/158 (36%), Positives = 85/158 (53%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
                +V +PDPILR  ++ I+  + ++ NL+D M +VMY TDGIGL+A Q+G+  +L+V
Sbjct: 14  ETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMV 73

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
            +          +V +NPKI  +SD    + EGCLS P   A+V R   + +   D   +
Sbjct: 74  FNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGE 133

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMI 158
              I    L A   QHE DHL G+LF D ++    D I
Sbjct: 134 RFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSI 171


>1y6h_A Peptide deformylase; open and close conformation, PDF,
           hydrolase; 2.20A {Leptospira interrogans} (A:)
          Length = 177

 Score =  174 bits (442), Expect = 6e-45
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 4   KPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           + ++   DPILR++S P+ +      +   LI +M + M   +G+GLAA QIG+L ++VV
Sbjct: 3   RKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVV 62

Query: 61  IDLQD-----HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYM 115
           +  +D             + +NP I   + D S + EGCLS+P  R  V+R   I +++M
Sbjct: 63  VGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWM 122

Query: 116 DCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKLVQLRD 170
           D          DG  A   QHE DHL GIL++D L   K     + +     + D
Sbjct: 123 DEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSHNVLD 177


>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote,
           higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis
           thaliana} PDB: 1zy0_A 1zy1_A (A:)
          Length = 197

 Score =  172 bits (436), Expect = 3e-44
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 17/186 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +V   DP+L   +R ++     +  I  +ID+M++VM    G+GLAA QIGV  R
Sbjct: 1   MDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLR 60

Query: 58  LVVIDLQD--------------HAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++V++                      + MV +NP +   S+  +++ EGCLS+  +RA 
Sbjct: 61  IIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAA 120

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V+R   + V   D   +   + A G  A  LQHE DHL+G L++D +       +     
Sbjct: 121 VERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTVDNLDL 180

Query: 164 KLVQLR 169
            L +  
Sbjct: 181 PLAEGC 186


>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase;
           1.70A {Bacillus cereus} PDB: 1ws1_A* (A:)
          Length = 156

 Score =  171 bits (434), Expect = 5e-44
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++  P+ +L      +   +  ++ L+ +M E M   DG+GLAA Q+GV  ++ V
Sbjct: 1   MAVLEIIKHPNEVLETPCERVINFDKKLVKLLKDMHETMLIADGVGLAAPQVGVSLQVAV 60

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ D       +  INP I+    +  V  EGCLS P    +V+R+ +I VR  +   +
Sbjct: 61  VDVDDD---TGKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRAQNRRGK 116

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
             ++ A+G LA  +QHE+DHL+G+LF   ++R   +   +
Sbjct: 117 VFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENELE 156


>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme,
           deformylation, structural genomics, PSI, protein
           structure initiative; 2.20A {Thermotoga maritima} (A:)
          Length = 176

 Score =  169 bits (430), Expect = 1e-43
 Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 5/165 (3%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
                + +F DP+LR+ ++P+ K + ++   I+ M+E MY  DG+GLAA Q+G+  R  V
Sbjct: 11  HHMYRIRVFGDPVLRKRAKPVTKFDENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFV 70

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +D+ +      P+  INP+I+    +  V +EG LS P+   +++RS  I V+Y +   +
Sbjct: 71  MDVGN-----GPVAVINPEILEIDPETEVAEEGXLSFPEIFVEIERSKRIKVKYQNTRGE 125

Query: 121 HQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
           +     +G  A   QHE DHLNG+L ID +S  KR ++ KK+  +
Sbjct: 126 YVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDI 170


>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase,
           iron, metal- binding, mitochondrion, protein
           biosynthesis, transit peptide; HET: BB2; 1.70A {Homo
           sapiens} PDB: 3g5p_A (A:)
          Length = 183

 Score =  167 bits (424), Expect = 7e-43
 Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 19/182 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKI---NSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYR 57
           M    +    DP+LR V+ P+E+      ++  L   +++VM     +GL+A Q+GV  +
Sbjct: 2   MSFSHVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQ 61

Query: 58  LVVIDLQDHAHRKN--------------PMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           ++ ++L +   R+                 VF+NP +         + EGC S+  + A 
Sbjct: 62  VLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLAC 121

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R   + +  +D N +  +  A G  A  +QHE+DHL G LFID +    R        
Sbjct: 122 VPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD--SRTFTNVYWM 179

Query: 164 KL 165
           K+
Sbjct: 180 KV 181


>1n5n_A Peptide deformylase; metalloenzyme, drug design,
           deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa}
           (A:1-157)
          Length = 157

 Score =  164 bits (417), Expect = 6e-42
 Identities = 62/147 (42%), Positives = 91/147 (61%), Gaps = 2/147 (1%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           M    ++ FPDP LR +++P+E ++  +  LID+M E MY   GIGLAA Q+ V  R+VV
Sbjct: 13  MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 72

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           +DL +      P VFINP+    +++   YQEGCLS+P +  +V R   + ++ +D +  
Sbjct: 73  MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 130

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
                A+GLLA C+QHE DHLNG LF+
Sbjct: 131 PFEEVAEGLLAVCIQHECDHLNGKLFV 157


>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
           {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A (A:1-148)
          Length = 148

 Score =  161 bits (409), Expect = 4e-41
 Identities = 51/147 (34%), Positives = 93/147 (63%), Gaps = 4/147 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++ +P  ILR +S+ +   ++ +   +D+M E M +++GIGLAA+Q+G+  R+++I+L
Sbjct: 3   LEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINL 62

Query: 64  QDHA---HRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
                  H+++ +  INPK I       +Y+EGCLS+P +  +V+R   + + Y +  A+
Sbjct: 63  PQEDGVQHKEDCLEIINPKFIETGGSM-MYKEGCLSVPGFYEEVERFEKVKIEYQNRFAE 121

Query: 121 HQIIYADGLLATCLQHELDHLNGILFI 147
            +++ A  LLA  +QHE+DHLNG+LF+
Sbjct: 122 VKVLEASELLAVAIQHEIDHLNGVLFV 148


>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron,
           metal-binding, protein biosynthesis; HET: NVC; 1.56A
           {Mycobacterium tuberculosis} (A:22-180)
          Length = 159

 Score =  160 bits (406), Expect = 9e-41
 Identities = 43/156 (27%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 17  VSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKN----- 71
                  + +D+  LI  M + M + +G+GLAA QIG   RL V D              
Sbjct: 1   TVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGV 60

Query: 72  --PMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGL 129
               V    +I     D     EGCLS+P       R+ +  V  +D +     I   GL
Sbjct: 61  VINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGL 120

Query: 130 LATCLQHELDHLNGILFIDHLSRLKRDMITKKMSKL 165
            A  LQHE  HL+G L++D L         + +   
Sbjct: 121 FARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSH 156


>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A
           {Bacillus cereus atcc 14579} PDB: 1lqy_A* (A:)
          Length = 185

 Score =  158 bits (400), Expect = 4e-40
 Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-------------INSDIMNLIDNMLEVMYSTDGIGL 47
           +  K ++   DPILR V+  +               I   I +    M E      GIGL
Sbjct: 3   LTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGL 62

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRADV 104
           AA QIGV  +++ + + D           NPKII+ S + +     EGCLS+  +    V
Sbjct: 63  AAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYV 122

Query: 105 KRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMSK 164
            R   ITV+    N +   +   GL A   QHE+DHLNG++F DH+++            
Sbjct: 123 PRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENPFAAPDDSKP 182

Query: 165 L 165
           L
Sbjct: 183 L 183


>2aia_A Peptide deformylase; hydrolase; HET: SB8; 1.70A
           {Streptococcus pneumoniae} PDB: 2ai7_A* 2aie_P* 1lm6_A
           2os3_A* (A:)
          Length = 203

 Score =  157 bits (398), Expect = 6e-40
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLID-------------NMLEVMYSTDGIGL 47
           +    ++   +P LR V+  +    SD   ++               M E M    G+GL
Sbjct: 14  IDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGL 73

Query: 48  AAVQIGVLYRLVVIDLQD--------HAHRKNPMVFINPKIITFSDDFSVY--QEGCLSI 97
           AA Q+ +  R++ + + +                +  NPKI++ S   +     EGCLS+
Sbjct: 74  AAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSV 133

Query: 98  P-DYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRD 156
             +    V R A +TV Y D + +   I   G  +  +QHE+DH+NGI+F D ++     
Sbjct: 134 DRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPF 193

Query: 157 MITKKMSKL 165
            +   +  L
Sbjct: 194 AVKDGLLIL 202


>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel,
           hydrolase, metal-binding; 1.69A {Escherichia coli} PDB:
           2w3u_A (A:1-143)
          Length = 143

 Score =  156 bits (397), Expect = 1e-39
 Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+
Sbjct: 3   LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            ++      +V INP+++  S +    +EGCLSIP+ RA V R+  + +R +D + +   
Sbjct: 63  SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119

Query: 124 IYADGLLATCLQHELDHLNGILFI 147
           + ADGLLA C+QHE+DHL G LF+
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143


>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase;
           1.30A {Escherichia coli BL21} (A:1-143)
          Length = 143

 Score =  156 bits (397), Expect = 1e-39
 Identities = 59/144 (40%), Positives = 98/144 (68%), Gaps = 3/144 (2%)

Query: 4   KPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDL 63
             ++  PD  LR+V++P+E++N++I  ++D+M E MY+ +GIGLAA Q+ +  R++VID+
Sbjct: 3   LQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV 62

Query: 64  QDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQI 123
            ++      +V INP+++  S +    +EGCLSIP+ RA V R+  + +R +D + +   
Sbjct: 63  SENRD--ERLVLINPELLEKSGET-GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFE 119

Query: 124 IYADGLLATCLQHELDHLNGILFI 147
           + ADGLLA C+QHE+DHL G LF+
Sbjct: 120 LEADGLLAICIQHEMDHLVGKLFM 143


>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A
           {Staphylococcus aureus} (A:)
          Length = 194

 Score =  154 bits (389), Expect = 7e-39
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEK-INSDIMNLIDNMLEVMYST------------DGIGL 47
           +  K ++    P LR+ +  +E  +  +    +  M E + ++             G+GL
Sbjct: 13  LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGL 72

Query: 48  AAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPKIITFSDDFSVY--QEGCLSIP-DYRAD 103
           AA QI +  R++ + + D    +    + +NPKI++ S   +     EG LS+  +    
Sbjct: 73  AAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGL 132

Query: 104 VKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITKKMS 163
           V R   IT++  D       +   G  A   QHE+DHLNG++F DH+ +           
Sbjct: 133 VHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHPLQPHTDAV 192

Query: 164 KL 165
           ++
Sbjct: 193 EV 194


>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus
           faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A (A:)
          Length = 188

 Score =  153 bits (387), Expect = 1e-38
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 20/185 (10%)

Query: 1   MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYST------------DGIGL 47
           +  K ++   +P LR V+  +   I  +   L ++ML  + ++              +GL
Sbjct: 2   ITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGDVGL 61

Query: 48  AAVQIGVLYRLVVIDLQDHAHRKN----PMVFINPKIITFSDDFSVY--QEGCLSIP-DY 100
           AA Q+ +  R++ + +  +           V  NPKI++ S         EGCLS+  D 
Sbjct: 62  AAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLSVDRDV 121

Query: 101 RADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMITK 160
              V R   ITV Y D   +   +      A  +QHE+DH+NGI+F DH+++     + +
Sbjct: 122 PGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENPFALKE 181

Query: 161 KMSKL 165
            +  +
Sbjct: 182 GVLVI 186


>1v3y_A Peptide deformylase; protein synthesis, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, hydrolase; 1.81A {Thermus thermophilus}
           (A:1-156)
          Length = 156

 Score =  144 bits (364), Expect = 8e-36
 Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 1   MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVV 60
           MV  P+ ++ DP+LRR +RP+E  +  I  L ++MLE M+   G+GLAA QIG+  RL V
Sbjct: 1   MVY-PIRLYGDPVLRRKARPVEDFS-GIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFV 58

Query: 61  IDLQDHAHR-----------KNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD-VKRSA 108
                               +   V  NP I    +      EG LS+P   ++ V R+ 
Sbjct: 59  AVEYADEPEGEEERPLRELVRRVYVVANPVITY-REGLVEGTEGXLSLPGLYSEEVPRAE 117

Query: 109 FITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFI 147
            I V Y D   + +++  +G +A   QHE+DHL+GILF 
Sbjct: 118 RIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFF 156


>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent
           oxidoreductase; 1.30A {Burkholderia SP} (A:143-274)
          Length = 132

 Score = 27.4 bits (60), Expect = 1.3
 Identities = 7/61 (11%), Positives = 11/61 (18%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+G   V         VI       +      +              +           D
Sbjct: 15  GMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 74

Query: 104 V 104
           V
Sbjct: 75  V 75


>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli}
           (A:137-268)
          Length = 132

 Score = 27.0 bits (59), Expect = 1.5
 Identities = 8/61 (13%), Positives = 17/61 (27%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+GL A Q        +I     A +    +      +    +  + +         +  
Sbjct: 16  GVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 75

Query: 104 V 104
           V
Sbjct: 76  V 76


>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH
           complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB:
           3jyl_A* (A:137-268)
          Length = 132

 Score = 24.7 bits (53), Expect = 7.2
 Identities = 7/61 (11%), Positives = 13/61 (21%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRAD 103
           G+G  A Q        +I       +      +            V +         +  
Sbjct: 16  GVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 75

Query: 104 V 104
           V
Sbjct: 76  V 76


>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum
           irakense} (A:1-16,A:198-408)
          Length = 227

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 11/76 (14%)

Query: 61  IDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQ 120
           I   D A      +     I    D F              A   R+   T   + C  +
Sbjct: 27  ITYNDDALVHVAELLS--DIAAGRDGFGFVPP---------AIRTRALEATNAAIHCIVE 75

Query: 121 HQIIYADGLLATCLQH 136
            Q++     L    QH
Sbjct: 76  TQVVQDGKRLGWGQQH 91


>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione
           disulfide, disulfide bond oxidoreductase; HET: GDS;
           2.30A {Escherichia coli} (A:1-87)
          Length = 87

 Score = 24.4 bits (53), Expect = 8.1
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 47  LAAVQIGVLYRLVVIDLQDHAHRKNPMVFINP--KIITFSDDFSVYQEGCLSIPDYRA 102
           L   +  + YRL+ +DL      +   + I+P  KI    D         LS+ +  A
Sbjct: 17  LFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGA 74


>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
           {Pseudomonas putida} (A:166-340)
          Length = 175

 Score = 24.3 bits (52), Expect = 9.3
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 44  GIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITF-SDDFSVYQEGCLSIPDYRA 102
            +GLAA     L    V+ + D    +          I   S D  ++++    + +   
Sbjct: 31  PVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 90

Query: 103 DVKRSAFITVRYMDCNAQHQIIYADGLLATCLQ 135
           D    A   V +      H+    +        
Sbjct: 91  DC---AVDAVGFEARGHGHEGAKHEAPATVLNS 120


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,312,808
Number of extensions: 57349
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 33
Length of query: 170
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 88
Effective length of database: 2,184,039
Effective search space: 192195432
Effective search space used: 192195432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)