Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
118
putative transmembrane protein [Candidatus Liberibacter
PRK10650 109
multidrug efflux system protein MdtI; Provisional
99.96
PRK10452 120
multidrug efflux system protein MdtJ; Provisional
99.96
PRK09541 110
emrE multidrug efflux protein; Reviewed
99.96
COG2076 106
EmrE Membrane transporters of cations and cationic drug
99.95
PRK11431 105
quaternary ammonium compound-resistance protein SugE; P
99.95
PRK02971 129
hypothetical protein; Provisional
99.93
pfam00893 93
Multi_Drug_Res Small Multidrug Resistance protein. This
99.92
TIGR03340
281
phn_DUF6 phosphonate utilization associated putative me
99.38
pfam05653
300
DUF803 Protein of unknown function (DUF803). This famil
99.36
COG2510 140
Predicted membrane protein [Function unknown]
99.08
PRK11453 299
O-acetylserine/cysteine export protein; Provisional
98.72
PRK11272 293
hypothetical protein; Provisional
98.7
pfam10639 112
UPF0546 Uncharacterized protein family UPF0546. This fa
98.56
TIGR00950 275
2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro
98.53
KOG2922
335
consensus
98.5
PRK11453
299
O-acetylserine/cysteine export protein; Provisional
98.4
pfam02694 107
UPF0060 Uncharacterized BCR, YnfA/UPF0060 family.
97.57
PRK02237 108
hypothetical protein; Provisional
97.41
KOG4831 125
consensus
97.15
COG1742 109
Uncharacterized conserved protein [Function unknown]
96.81
COG3169 116
Uncharacterized protein conserved in bacteria [Function
96.24
pfam04342 108
DUF486 Protein of unknown function, DUF486. This family
95.39
TIGR03340 281
phn_DUF6 phosphonate utilization associated putative me
98.77
pfam00892 126
EamA EamA-like transporter family. This family includes
98.75
COG0697
292
RhaT Permeases of the drug/metabolite transporter (DMT)
98.29
PRK11689 295
hypothetical protein; Provisional
98.28
COG0697 292
RhaT Permeases of the drug/metabolite transporter (DMT)
98.22
PRK10532 293
threonine and homoserine efflux system; Provisional
98.16
PRK11272
293
hypothetical protein; Provisional
97.46
pfam04142
238
Nuc_sug_transp Nucleotide-sugar transporter. This famil
97.33
pfam06800 268
Sugar_transport Sugar transport protein. This is a fami
97.32
pfam03151 149
TPT Triose-phosphate Transporter family. This family in
97.15
COG5006 292
rhtA Threonine/homoserine efflux transporter [Amino aci
97.03
TIGR00950
275
2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro
96.98
TIGR00776 336
RhaT RhaT L-rhamnose-proton symporter family protein; I
96.94
pfam05653 300
DUF803 Protein of unknown function (DUF803). This famil
96.72
PRK11689
295
hypothetical protein; Provisional
96.5
pfam06800
268
Sugar_transport Sugar transport protein. This is a fami
96.46
COG2962
293
RarD Predicted permeases [General function prediction o
96.43
KOG2234
345
consensus
96.11
KOG4510
346
consensus
95.64
KOG4314
290
consensus
95.62
TIGR00776
336
RhaT RhaT L-rhamnose-proton symporter family protein; I
95.61
COG2962 293
RarD Predicted permeases [General function prediction o
95.37
COG4975 288
GlcU Putative glucose uptake permease [Carbohydrate tra
94.31
KOG2765
416
consensus
94.11
KOG3912
372
consensus
93.69
pfam04657 139
DUF606 Protein of unknown function, DUF606. This family
93.51
pfam08449 303
UAA UAA transporter family. This family includes transp
96.74
KOG1441 316
consensus
90.35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=7.8e-29 Score=158.25 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 7 m~~~yL~~AI~~EV~~t~~LK~S~-------------GFtk~~psi~~i~~y~~sf~~Ls~alk~iplgvaYAiWsGlGi 73 (109)
T PRK10650 7 VHAAWLALAIVLEIVANVLLKFSD-------------GFRRKILGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGI 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999999998888705-------------9777361999999999999999999921864889999985899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999938999989999999999999999872
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 74 v~~~~~g~~~f~q~l~~~~~~Gi~lIi~GVv~lnLs 109 (109)
T PRK10650 74 AATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKLA 109 (109)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECC
T ss_conf 999999999967889889999999999988404249
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=1.2e-28 Score=157.42 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 2 ~~Wl~L~lAI~~EV~gT~~LK~s~-------------gft~~~p~i~~~~~y~~sf~~Ls~alk~ipvgvAYAiWsGvG~ 68 (120)
T PRK10452 2 IYWILLALAIATEITGTLSMKWAS-------------VSEGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGI 68 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 889999999999999999989981-------------7887338999999999999999999811727999999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 69 ~~itlig~~~F~E~l~~~~~~gi~lIi~GVv~l~~gs 105 (120)
T PRK10452 69 LFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCC
T ss_conf 9999999999679897999999999998784042478
>PRK09541 emrE multidrug efflux protein; Reviewed
Back Show alignment and domain information
Probab=99.96 E-value=1.9e-28 Score=156.39 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 2 ~~wl~L~~AI~~EV~gt~~lK~S~-------------GFt~~~ps~~~~~~y~~sf~~Ls~alk~ipvgvaYAiWsG~Gi 68 (110)
T PRK09541 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 268999999999999998769866-------------9866457999999999999999999963883568999987899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 69 ~~~~iig~~~f~e~~~~~~~lGi~lIi~Gvv~lnL~s 105 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999679897999999999999898410035
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.95 E-value=1e-27 Score=152.85 Aligned_cols=104 Identities=20% Similarity=0.357 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 2 m~w~~L~lAi~~EV~~~~~lK~s~-------------gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~ 68 (106)
T COG2076 2 MAWIYLLLAILLEVVGTTLLKYSD-------------GFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGI 68 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 349999999999999999999985-------------4565343999999999999999999840852789999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 69 v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 69 VGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999976078477999999999999999863047
>PRK11431 quaternary ammonium compound-resistance protein SugE; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=1.4e-27 Score=152.13 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 1 MaW~~L~~Ai~~Ev~~t~~lk~s~-------------gft~~~p~i~~~~~~~~sf~~Ls~alk~lpvg~aYAvWsGiG~ 67 (105)
T PRK11431 1 MSWIILVIAGLLEVVWAVGLKYTH-------------GFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGA 67 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 966999999999999999999886-------------7774599999999999999999999957987109999997999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 68 vg~~~iG~~~f~e~~~~~~i~~i~lIi~GVv~Lkl~S 104 (105)
T PRK11431 68 VGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999179898999999999999998331146
>PRK02971 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.93 E-value=1.1e-25 Score=142.86 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 989999999999999999999530222221211223-----456666799999999999999999999970338999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADS-----TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVV 75 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~ 75 (118)
T Consensus 2 ~g~~~~l~SV~L~s~aQL~lK~gm~~lp~~~~~~~~~~~~l~~~~~~~~v~~Gl~~Y~lSmlcW~~aL~~l~LS~AYPll 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLGWGMSRLPLMSHLLDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYALL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 12899999999999999999987844898577787789999986237999999999999999999999542075541578
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999--389999899999999999999998724
Q gi|254780298|r 76 TSAIIIIATCLSSLI--WDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 76 s~~~~v~~~~~~~~~--f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 82 SLs-YVlV~l~A~~Lp~F~E~~s~~K~lGv~lIi~Gv~lI~~p~ 124 (129)
T PRK02971 82 SLS-YALVYLAAMLLPGFNETFSLKKTLGVACIMLGVMLINLPT 124 (129)
T ss_pred HHH-HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHEEEEECCC
T ss_conf 689-9999999999877378600899888999964112586563
>pfam00893 Multi_Drug_Res Small Multidrug Resistance protein
Back Show alignment and domain information
Probab=99.92 E-value=1.1e-24 Score=138.02 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
T Consensus 1 M~wl~L~~Ai~~Ev~~t~~lK~s~-------------gft~~~~~~~~~~~~~~sf~~Ls~alk~lpvgvAYAiW~GiG~ 67 (93)
T pfam00893 1 MNWILLVIAILLEVIGTILLKSSE-------------GFTKLWPSLGTIVGYGISFYLLSKALKSIPLGVAYAVWSGIGT 67 (93)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 967999999999999999889870-------------8764678999999999999999999966851989999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999993899998999999999
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFV 106 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lI 106 (118)
T Consensus 68 ~~~~~ig~~~f~e~~~~~~~~gi~LI 93 (93)
T pfam00893 68 VGTTLVGILLFGEPLSLKKIIGLALI 93 (93)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHEEC
T ss_conf 99999999994799988988771009
This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins, including ethidium bromide and quaternary ammonium compounds, through coupling with proton influx.
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein
Back Show alignment and domain information
Probab=99.38 E-value=6.1e-12 Score=75.91 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH---HHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211---223------------------456666799999999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHF---ADS------------------TRFSDGKLFWLGFFFYAISFFTYI 60 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~ 60 (118)
T Consensus 2 a~~lvL~aA~lHA~WN~l~K~~~d~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~p~p~~~~w~~i~~S~~~h~~Y~~~L~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999995488810899999999999999999999998636899867899999999999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 61 ~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 82 ~aY~~gdls~vYPiaRgs-Pllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~~~ 136 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHCCCCCEECHHHCCC-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998358841111064157-6999999999974768898999999999999998401
This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
>pfam05653 DUF803 Protein of unknown function (DUF803)
Back Show alignment and domain information
Probab=99.36 E-value=3.7e-13 Score=81.85 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999953022222121--12234566667999999999999999999999703389999999999999
Q gi|254780298|r 5 ALLANVALGVLSSVFIKMSIIPPEAPPH--FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIII 82 (118)
Q Consensus 5 ~l~~~i~~~~~g~i~lK~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~ 82 (118)
T Consensus 11 lav~ss~~ig~s~~i~K~~~~r~~~~~~~~~~~g~~Yl~~~~Ww~G~~~m~~Gei~nF~Ay~FAPasLVtPL-galsvi~ 89 (300)
T pfam05653 11 LAVSSSIFIGSSFIIKKKGLLRLARGGMRAGEGGYGYLKEWLWWAGLLTMIVGEAANFAAYAFAPATLVTPL-GALSVII 89 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHH
T ss_conf 999876576245543159899988605656678731450829998789999866888999983179988624-1689999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999389999899999999999999998724
Q gi|254780298|r 83 ATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 83 ~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 90 naila~~~L~E~l~~~~~~G~~l~i~GsvliV~~a 124 (300)
T pfam05653 90 SAVLSSFFLNEKLNLFGKLGCVLCIVGSTVIVIHA 124 (300)
T ss_pred HHHHHHHHHHCCCEEEEEEHEEEEEECEEEEEECC
T ss_conf 99999999726660100001010331304557427
This family consists of several eukaryotic proteins of unknown function.
>COG2510 Predicted membrane protein [Function unknown]
Back Show alignment and domain information
Probab=99.08 E-value=2.2e-10 Score=68.32 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=86.7
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCC-CCH-HHH---------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899-99999999999999999530222221-211-223---------------------45666679999999999999
Q gi|254780298|r 1 MKWI-ALLANVALGVLSSVFIKMSIIPPEAP-PHF-ADS---------------------TRFSDGKLFWLGFFFYAISF 56 (118)
Q Consensus 1 M~wl-~l~~~i~~~~~g~i~lK~~~~~~~~~-~~~-~~~---------------------~~~~~~~~~~~~~~~~~~s~ 56 (118)
T Consensus 2 ~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 2 MAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 11799999999999899999997325669428999999999999999998627610356667521015549888999999
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999703389999999999999999999993899998999999999999999987
Q gi|254780298|r 57 FTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 57 ~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
T Consensus 82 l~Yf~ALk~G~as~VvPi-dk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHCCCCCEEEEC-CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEEC
T ss_conf 999999964985558772-3111999999999995587878999999999857044756
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Back Show alignment and domain information
Probab=98.72 E-value=1.3e-06 Score=50.01 Aligned_cols=111 Identities=13% Similarity=0.204 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHH-----------H------------------HHHHHHHHHHHH
Q ss_conf 9999999999999999999530222221211--22345-----------6------------------666799999999
Q gi|254780298|r 3 WIALLANVALGVLSSVFIKMSIIPPEAPPHF--ADSTR-----------F------------------SDGKLFWLGFFF 51 (118)
Q Consensus 3 wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~--~~~~~-----------~------------------~~~~~~~~~~~~ 51 (118)
T Consensus 145 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~llyl~i~~ 224 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999981178224999999999999999999999975831211100148889999999999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 52 YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 52 ~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
T Consensus 225 s~lay~~w~~~l~~~~a~~~s~~-~~l~Pv~av~~g~llLgE~lt~~~~iG~~lil~Gv~l~~ 286 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999996689999999-999989999999999199997999999999999999994
>PRK11272 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.70 E-value=1.2e-06 Score=50.04 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-H-----------------HHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999530222221211-2-----------------23456-66---67999999999999999999
Q gi|254780298|r 4 IALLANVALGVLSSVFIKMSIIPPEAPPHF-A-----------------DSTRF-SD---GKLFWLGFFFYAISFFTYIM 61 (118)
Q Consensus 4 l~l~~~i~~~~~g~i~lK~~~~~~~~~~~~-~-----------------~~~~~-~~---~~~~~~~~~~~~~s~~~~~~ 61 (118)
T Consensus 155 ~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~~ll~~~~~~~~~~~~~~~~~~~~~l~yl~i~~t~iay~l~~~ 234 (293)
T PRK11272 155 ILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMY 234 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999871678888999999999999999999987476545678999999999999999999999999
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 62 VVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 62 aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 235 ~l~~~~~~~as~~~~-l~Pv~a~l~g~~~LgE~l~~~~~iG~~lIl~gv~lv~~~k 289 (293)
T PRK11272 235 LLRNVRPALATSYAY-VNPVVAVLLGTGLGGERLSPIEWLALGVIVFAVVLVTLGK 289 (293)
T ss_pred HHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999749999999998-9999999999999399886999999999999999992721
>pfam10639 UPF0546 Uncharacterized protein family UPF0546
Back Show alignment and domain information
Probab=98.56 E-value=1.8e-07 Score=54.11 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999953022222121---1223456666799999999999999999999970338999999999999999999999389
Q gi|254780298|r 17 SVFIKMSIIPPEAPPH---FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 (118)
Q Consensus 17 ~i~lK~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E 93 (118)
T Consensus 12 NPfirrgs~~~~~~~~~~~~~~~~~l~~n~~y~vPfllNqsGSv~f~~lL~~~~lSlaVPi~NslaF~fT~i~~~~lgek 91 (112)
T pfam10639 12 NPLLKRGSKGLENVKSPSFLLEFKFLFLRPKYLIPFLLNQSGSVVFFLLLGKTDLSLAVPIANSLAFVFTVLTGWLLGEK 91 (112)
T ss_pred CHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 58999761336864463399999999808699999999705689999987057704750023179999999999996366
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999
Q gi|254780298|r 94 PFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 94 ~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 92 ~~~~~t~lG~~Lv~~Gi~LC 111 (112)
T pfam10639 92 VLGRKTWLGMGLVVAGTALC 111 (112)
T ss_pred CCCHHHHHHHHHHHHCCEEE
T ss_conf 67457899998998050222
This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters
Back Show alignment and domain information
Probab=98.53 E-value=5.1e-06 Score=47.05 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHH------------------------HHHHHHH--HHHHHHHHHHHH
Q ss_conf 999999999999999999953022222-1211223------------------------4566667--999999999999
Q gi|254780298|r 3 WIALLANVALGVLSSVFIKMSIIPPEA-PPHFADS------------------------TRFSDGK--LFWLGFFFYAIS 55 (118)
Q Consensus 3 wl~l~~~i~~~~~g~i~lK~~~~~~~~-~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~s 55 (118)
T Consensus 141 ~~~~~~s~~~~A~g~v~~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~ 220 (275)
T TIGR00950 141 LLLGLLSGISFALGTVLAKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLA 220 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999875206798742678999999999999999999845650111102469999999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999970338999999999999999999999389999899999999999999
Q gi|254780298|r 56 FFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGIT 111 (118)
Q Consensus 56 ~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvi 111 (118)
T Consensus 221 y~l~~~Gl~~V~~~~a-~~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l 275 (275)
T TIGR00950 221 YFLWNKGLTLVDPSAA-SILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL 275 (275)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9999987643470465-776646689999999999730467989999999999829
The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
>KOG2922 consensus
Back Show alignment and domain information
Probab=98.50 E-value=1.9e-08 Score=58.93 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999530222221--211223456666799999999999999999999970338999999999999999999999389
Q gi|254780298|r 16 SSVFIKMSIIPPEAP--PHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 (118)
Q Consensus 16 g~i~lK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E 93 (118)
T Consensus 36 sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPL-GAlsvi~saila~~~L~E 114 (335)
T KOG2922 36 SFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPL-GALSVIISAILASFFLKE 114 (335)
T ss_pred EHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 0345577789886412344679840556378997889999886755788750347663533-057788999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999872
Q gi|254780298|r 94 PFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 94 ~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 115 kl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922 115 KLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHEEEEECCCEEEEEE
T ss_conf 88786453036786051799982
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Back Show alignment and domain information
Probab=98.40 E-value=2.3e-05 Score=43.87 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHH---------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 89999999999999999999530222221211--223---------45666---679999999999999999999997-0
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHF--ADS---------TRFSD---GKLFWLGFFFYAISFFTYIMVVAH-F 66 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~--~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~~aL~~-~ 66 (118)
T Consensus 5 ~~lL~l~~~~iWG~~f~~~K~~l~~~~Pl~~a~lRf~la~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 84 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGM 84 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999987899999998279999999999999999999999832585799999999999999999999999828
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33899999999999999999999938999989999999999999999872
Q gi|254780298|r 67 SVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 67 ~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 85 ~ag~aal-i~~~~P~~~~lla~~~l~Erl~~~~~~Gi~l~~~Gv~ll~~~ 133 (299)
T PRK11453 85 PAGLASL-VLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 3889999-999899999999999868988688999999999988865237
>pfam02694 UPF0060 Uncharacterized BCR, YnfA/UPF0060 family
Back Show alignment and domain information
Probab=97.57 E-value=0.0022 Score=34.19 Aligned_cols=101 Identities=6% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211223456666799999999999999999999970338999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v 81 (118)
T Consensus 4 s~~lF~~aal~EI~Gcyl~W~wlR~-------------~ks-~~~~~~g~~~L~~fg~l~Tl~p~~fGRvYAAYGGvyI~ 69 (107)
T pfam02694 4 TILLFVAAALCEIGGGYLVWLWLRE-------------NKS-IWLALPGAISLAVYGFLATLQPAAFGRVYAAYGGVFVC 69 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------------CCC-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH
T ss_conf 9999999999999999999999986-------------996-36899999999999999946941100699985309999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999872
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 70 ~Sl~W~w~vdg~~pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T pfam02694 70 LALMWGWVVDGVKPDLYDWIGALIALCGVLVIMYA 104 (107)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEC
T ss_conf 99999999748789677898599999838984115
>PRK02237 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=97.41 E-value=0.0023 Score=34.08 Aligned_cols=101 Identities=9% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211223456666799999999999999999999970338999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v 81 (118)
T Consensus 5 s~~lF~laalaEI~Gcyl~w~wlR~g-------------ks-~~~~~~g~~~L~lfg~llTl~p~~~GRvYAAYGGvyI~ 70 (108)
T PRK02237 5 TILLFVLAALAEIGGCYLPWLWLREG-------------KS-AWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVYIA 70 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-------------CC-EEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH
T ss_conf 99999999999998888979988169-------------98-12099899999999999946912120089985229999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999872
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 71 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iIl~~ 105 (108)
T PRK02237 71 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMFA 105 (108)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEC
T ss_conf 99999999748899755898699999738873225
>KOG4831 consensus
Back Show alignment and domain information
Probab=97.15 E-value=0.00064 Score=36.82 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999953022222121--------122345666679999999999999999999997033899999999999999999
Q gi|254780298|r 15 LSSVFIKMSIIPPEAPPH--------FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCL 86 (118)
Q Consensus 15 ~g~i~lK~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~ 86 (118)
T Consensus 17 ~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~ 96 (125)
T KOG4831 17 ATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIF 96 (125)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 56399998776676506805899999999999988699998999977468999999953982466540113679999877
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999938999989999999999999999
Q gi|254780298|r 87 SSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 87 ~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 97 G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831 97 GKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHE
T ss_conf 888542156652110000776413431
>COG1742 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=96.81 E-value=0.009 Score=31.22 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
Q ss_conf 9899999999999999999995302222212112234566667999999999999999999999703-389999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFS-VRIAQTVVTSAI 79 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~-ls~ayp~~s~~~ 79 (118)
T Consensus 3 ~~~~~f~lAalaEI~Gcyl~WlWLR~g-------------k-s~~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvy 68 (109)
T COG1742 3 RSYLLFVLAALAEIGGCYLVWLWLRLG-------------K-SALWLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVY 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------C-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
T ss_conf 878999999999973167879999738-------------7-32767778999999999997178022003788736367
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999993899998999999999999999987
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEEEE
T ss_conf 799999999971767748875257999836213685
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Back Show alignment and domain information
Probab=96.24 E-value=0.051 Score=27.57 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHH
Q ss_conf 9999999999999995302222212112234566667999999999999999999999703-------389999999999
Q gi|254780298|r 7 LANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFS-------VRIAQTVVTSAI 79 (118)
Q Consensus 7 ~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~-------ls~ayp~~s~~~ 79 (118)
T Consensus 9 l~~vlLL~~SNvFMTFAW---------YghLk~~~~pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVIt 79 (116)
T COG3169 9 LYPVLLLIGSNVFMTFAW---------YGHLKFTNKPLVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVIT 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999995279999999---------98875247734477899866999999995851111154431999989999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999938999989999999999999999
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 80 L~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 80 LAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999973841188999999999889885
>pfam04342 DUF486 Protein of unknown function, DUF486
Back Show alignment and domain information
Probab=95.39 E-value=0.12 Score=25.69 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHH
Q ss_conf 9999999999999530222221211223456666799999999999999999999-------970338999999999999
Q gi|254780298|r 9 NVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVV-------AHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 9 ~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL-------~~~~ls~ayp~~s~~~~v 81 (118)
T Consensus 3 ~i~LL~~SNiFMTfAW--------YGHLK~~~~~pl~~ail~SWgIAffEY~lqVPANRiG~~~~s~~qLKi~QEvItL~ 74 (108)
T pfam04342 3 TVLLLICSNVFMTFAW--------YGHLKYLNVKPLIIAALVSWGIAFFEYLLQVPANRIGYTVLSVGQLKIMQEVITLA 74 (108)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 5699999999999999--------99861566682999999999999999998775224422542799999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 75 VF~~Fsv~yl~e~l~~n~l~af~ci~~av~Fi 106 (108)
T pfam04342 75 IFVPFSVFYLRQPLRLNYLWAGLCLLGAVYFM 106 (108)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 99999999948976589999999999878723
This family contains several proteins of uncharacterized function.
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein
Back Show alignment and domain information
Probab=98.77 E-value=1.9e-07 Score=54.01 Aligned_cols=69 Identities=16% Similarity=0.316 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 213 ~~~~~G~~s~~sY~lvl~A~~~~pva~VaalRe-tSIlfa~l~g~~~lkE~~~~~Rl~~~~li~~Gvvll 281 (281)
T TIGR03340 213 SATLGGLMIGGAYALVLWAMTRLPVATVVALRN-TSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999981084265676998-899999999999977965098999999999979969
This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
>pfam00892 EamA EamA-like transporter family
Back Show alignment and domain information
Probab=98.75 E-value=2e-07 Score=53.93 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 45 FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 45 ~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
T Consensus 57 ~~~g~~~~~~~~~l~~~~l~~~~a~~as~~-~~~~Pv~~~l~a~~~l~E~~~~~~~iG~~l~~~Gv~lv~ 125 (126)
T pfam00892 57 LYLGLFGTALGYLLYFYALKYVSASNASVI-TSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988389999999-998999999999999289998999999999999999993
This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6.
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Back Show alignment and domain information
Probab=98.29 E-value=1.5e-05 Score=44.75 Aligned_cols=73 Identities=19% Similarity=0.368 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999703389999999999999999999-9938999989999999999999999872
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSS-LIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~-~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~p~~~~ll~~~~~~~e~~~~~~~~~~~~~~~Gv~li~~~ 144 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIG-LLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999998531999999999-9999999999999848877599999999999889864115
>PRK11689 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.28 E-value=0.0001 Score=40.72 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 221 ~g~~~g~af~~W~~al~~~~a~~~a~-l~yl~Pv~S~ll~~l~L~e~lt~~~~~G~~lI~~G~ll~~~~~ 289 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLAT-ASYFTPVLSSALAALLLSTPLSFSFWQGAAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997158999999-9999999999999999668752999999999999999999997
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Back Show alignment and domain information
Probab=98.22 E-value=3.2e-05 Score=43.15 Aligned_cols=72 Identities=19% Similarity=0.403 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~iG~~li~~g~~~~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999866709999999-9999999999999948999688999999999999999643
>PRK10532 threonine and homoserine efflux system; Provisional
Back Show alignment and domain information
Probab=98.16 E-value=3.7e-05 Score=42.86 Aligned_cols=70 Identities=7% Similarity=0.082 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
T Consensus 214 vavlssviPY~Le~~aLrrl~a~~fg-vL~slePa~Aal~G~llLgE~ls~~q~lGialVv~As~g~~lt~ 283 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFG-TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998789999999998537887999-99998899999999999568897999999999999999999705
>PRK11272 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=97.46 E-value=0.0041 Score=32.90 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 47 LGFFFYAISF-FTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~-~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~ss~~a~-ii~~~~Pi~~~l~~~-lf~er~~~~~~~gl~l~~~Gv~ll~~~ 144 (293)
T PRK11272 76 IGLLLLAVGNGLVTVAEHQNVPSGIAA-VVVATVPLFTLLFSR-LFGIRTRKLEWAGIAIGLAGIILLNSG 144 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999875488999-999887999999998-737778499999999999989998168
>pfam04142 Nuc_sug_transp Nucleotide-sugar transporter
Back Show alignment and domain information
Probab=97.33 E-value=0.0044 Score=32.72 Aligned_cols=71 Identities=13% Similarity=0.318 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 45 FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 45 ~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 20 ~aVPa~lY~~qN~l~~~~l~~l~~~t~q-vl~q~Kil~tA~~~~~~l~r~lS~~QW~AL~lL~~Gv~l~q~~ 90 (238)
T pfam04142 20 VAVPAFIYTLQNNLLYVALSNLDAATYQ-VTYQLKILTTALFSVLMLGRKLSWYQWASLLLLFLGVAIVQLD 90 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9899999999853999999809929999-9983799999999999986947599999999999999840357
This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc.
>pfam06800 Sugar_transport Sugar transport protein
Back Show alignment and domain information
Probab=97.32 E-value=0.00026 Score=38.72 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHH
Q ss_conf 7999999999999999999999703389999999999999999999993899998999----999999999999
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITL 112 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvil 112 (118)
T Consensus 195 ~~nii~G~~w~ignl~~~~S~~~~Gvatafsl-SQl~VVISTlGGI~~L~EkKtkkem~~~i~G~iLIv~Gail 267 (268)
T pfam06800 195 WLNIIPGLFWGIGNLFMLISAQKVGVATAFSL-SQLGVVISTLGGIFFLGEKKTKKEMIAVIIGIILIIVGAVL 267 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEH-HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHEE
T ss_conf 99876569999999999862462180223457-76666997611234760357503577899988898633111
This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
>pfam03151 TPT Triose-phosphate Transporter family
Back Show alignment and domain information
Probab=97.15 E-value=0.0097 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.388 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999703389999999999999999999993899998999999999999999
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
T Consensus 84 g~~~f~~n~~~f~~i~~~s~lt~--~v~g~~K~~~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~ 146 (149)
T pfam03151 84 GVLAFLYNLSAFGLLGRTSPLTS--SVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVL 146 (149)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999830358999--9999988888976755421896858999999999998985
This family includes transporters with a specificity for triose phosphate.
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=97.03 E-value=0.0053 Score=32.34 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlS-LePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLS-LEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHCCCCHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99862310378999996077457899998-737999998999965779899999999999997123
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters
Back Show alignment and domain information
Probab=96.98 E-value=0.014 Score=30.24 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999999999999999997-033899999999999999999999938999989999999999999999872
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAH-FSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~-~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 54 ~~~~l~g~~~~~~~~~~~f~a~~~~~~v~~a~-l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~ 128 (275)
T TIGR00950 54 LRLLLLGALQIGVFYVLYFVAVKRTLPVGEAA-LLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSD 128 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988722079999-9999989999999998715685299999999999999888627
The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family
Back Show alignment and domain information
Probab=96.94 E-value=0.0062 Score=32.00 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 999999999999999999999----7033899999999999999999999938999989999----99999999999987
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVA----HFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAI----GIMFVMIGITLISF 115 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~----~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~----Gi~lIi~Gvili~~ 115 (118)
T Consensus 256 N~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~-SQ~~~i~stlGGI~~l~E~K~Kr~~~~~~~GiiliiiAa~~~g~ 334 (336)
T TIGR00776 256 NILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSL-SQLGVIISTLGGILILGEKKTKRELIAIVVGIILIIIAAVILGI 334 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87889999999999999846871068899999999-99999999987887630378752001454578998878999875
This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
>pfam05653 DUF803 Protein of unknown function (DUF803)
Back Show alignment and domain information
Probab=96.72 E-value=0.0063 Score=31.96 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999970338999999999999999999999389--9998999----9999999999999872
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE--PFYWTTA----IGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E--~~~~~~~----~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 218 ~lv~~~~~Qi~yLNkAL~~fdts~V~PiyyV~fT~~~Iiag~I~F~e~~~~~~~~i~~~~~Gf~~i~~GV~lL~~~ 293 (300)
T pfam05653 218 VVVTCVVTQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTILLGTFLLHAT 293 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 9999999999999999864687377237999999999972524543003698999999999999986610477634
This family consists of several eukaryotic proteins of unknown function.
>PRK11689 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=96.50 E-value=0.035 Score=28.34 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999703----38999999999999999999999389999899999999999999998
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFS----VRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~----ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
T Consensus 62 ~~l~~g~~lf~~y~~~~~~~l~~a~~~~~a~~a~lIny~w-Pl~~~l~a~~~~~e~~~~~~~~g~~~~~~Gv~lv~ 136 (295)
T PRK11689 62 RYLIAGGLLFVSYEICLALSLGYANTRHQAIEVGMVNYLW-PSLTILFAVLFNGQKANWLIIPGLLLALVGVCWVL 136 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998722431359999999998-99999999997478764999999999999799856
>pfam06800 Sugar_transport Sugar transport protein
Back Show alignment and domain information
Probab=96.46 E-value=0.0014 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999703389999999999999999999993899998999----9999999999999872
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 49 isG~~WaiGQ~~Qf~s~~~~GVS~tmPiSTg~QLvg~sL~Gv~~fgEW~t~~~~~~G~~Al~liiiG~~lTs~~ 122 (268)
T pfam06800 49 ISGAFWAIGQIGQFKSFKLIGVSKTMPISTGFQLVGTSLFGVLVFGEWSTSMQKILGFLALILIIIGIYLTSLQ 122 (268)
T ss_pred HHHHHHHHHHHHHHEEEEEECCEEEEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 98999986343142252330210233102318999888998710044651789999999999999727137631
This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
>COG2962 RarD Predicted permeases [General function prediction only]
Back Show alignment and domain information
Probab=96.43 E-value=0.039 Score=28.13 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999---97033899999999999999999999938999989999999999999999
Q gi|254780298|r 52 YAISFFTYIMVV---AHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 52 ~~~s~~~~~~aL---~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL----~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPL----VNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHHHHHEECCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99777875053179853688767999899----99999999997144688999999999999999
>KOG2234 consensus
Back Show alignment and domain information
Probab=96.11 E-value=0.06 Score=27.22 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 50 FFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 50 ~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt-~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234 100 LIYALQNNLQYVALSNLDAATYQVT-YQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999861099999953995332125-66889999999999996033288999999999889987325
>KOG4510 consensus
Back Show alignment and domain information
Probab=95.64 E-value=0.0023 Score=34.12 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 55 SFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 55 s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
T Consensus 110 gvmlmyya~~~mslaDA~vI-tFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510 110 GVMLMYYALMYMSLADAVVI-TFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred HHHHHHHHHHHCCHHHEEEE-EECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEE
T ss_conf 89999999962044103799-85273999999999975987589998877744158999
>KOG4314 consensus
Back Show alignment and domain information
Probab=95.62 E-value=0.0086 Score=31.31 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 50 FFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 50 ~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai-~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314 61 IFWTGANYLYLLALKKISASDASAI-FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred EEEECCCCHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9872577199999985386565799-870289999999987335000114999999857679998
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family
Back Show alignment and domain information
Probab=95.61 E-value=0.1 Score=26.10 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHH
Q ss_conf 45666679999999999999999999997033899999999999999999999938999-------98999999999999
Q gi|254780298|r 37 TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPF-------YWTTAIGIMFVMIG 109 (118)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~-------~~~~~~Gi~lIi~G 109 (118)
T Consensus 62 F~l~~~~~gl~sG~~WalGQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiG 141 (336)
T TIGR00776 62 FSLTIFLVGLISGAFWALGQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIG 141 (336)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 12477888999999999875458777764020220145664899987877530122447631013054999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999872
Q gi|254780298|r 110 ITLISFH 116 (118)
Q Consensus 110 vili~~~ 116 (118)
T Consensus 142 v~lts~~ 148 (336)
T TIGR00776 142 VYLTSIS 148 (336)
T ss_pred HHHHHHH
T ss_conf 9997302
This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
>COG2962 RarD Predicted permeases [General function prediction only]
Back Show alignment and domain information
Probab=95.37 E-value=0.12 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~-G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTL-GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999638889899999999752778999-99998799999999999817899889999999999999999889
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Back Show alignment and domain information
Probab=94.31 E-value=0.007 Score=31.75 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHH
Q ss_conf 99999999999999703389999999999999999999993899998999----999999999999987
Q gi|254780298|r 51 FYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITLISF 115 (118)
Q Consensus 51 ~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvili~~ 115 (118)
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSl-SQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSL-SQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHHHHHHHHHHHHHHCEEEEEEH-HHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 887538899876022050124547-55200025412389983147636610354467999877666320
>KOG2765 consensus
Back Show alignment and domain information
Probab=94.11 E-value=0.093 Score=26.29 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 54 ISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 54 ~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 171 ~anl~~naALa~TsVAS~Til-SStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765 171 LANLTSNAALAFTSVASTTIL-SSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 999888877642144321234-40216999999998284420099999999864257999914
>KOG3912 consensus
Back Show alignment and domain information
Probab=93.69 E-value=0.34 Score=23.56 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 52 YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 52 ~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 96 Di~gsslm~vgL~lTsASs-fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912 96 DIAGSSLMYVGLNLTSASS-FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEE
T ss_conf 8751489998888756789-998605052334998999986303024689999999646404542
>pfam04657 DUF606 Protein of unknown function, DUF606
Back Show alignment and domain information
Probab=93.51 E-value=0.36 Score=23.40 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6799999999999999999999970338999999999999999999999--------3899998999999999999999
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLI--------WDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~--------f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
T Consensus 65 p~w~~lGG--~lGa~~V~~~~~~vp~lG~~~~~--~~~v~GQli~sl~iD~fGl~g~~~~~~~~~ri~G~~l~i~Gv~l 139 (139)
T pfam04657 65 PWWAWLGG--LLGAFYVTLNILLVPRLGAALTV--VLVIAGQLLMSLLIDHFGLFGLPKRPLSLTRLLGLLLMLAGVVL 139 (139)
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 74999989--99999999999998032489999--99999999999999964455888877889999999999999869
This family includes several uncharacterized bacterial proteins.
>pfam08449 UAA UAA transporter family
Back Show alignment and domain information
Probab=96.74 E-value=0.014 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999993899998999999999999999987
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
T Consensus 262 k~~sillSv~~F~~~lt~~~~~G~~lvf~G~~~y~~ 297 (303)
T pfam08449 262 KFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAY 297 (303)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998744996858999999999999999999
This family includes transporters with a specificity for UDP-N-acetylglucosamine.
>KOG1441 consensus
Back Show alignment and domain information
Probab=90.35 E-value=0.41 Score=23.13 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999993899998999999999999999987
Q gi|254780298|r 83 ATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 83 ~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
T Consensus 275 vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441 275 VIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 998671345688854557879999999999999
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value
Target
118
putative transmembrane protein [Candidatus Liberib
2i68_A_ 137
(A:) Protein EMRE; transmembrane protein, small-mu
1e-04
>2i68_A (A:) Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}Length = 137
Back Hide alignment and structure
Score = 39.8 bits (93), Expect = 1e-04
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%)
Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
+I L + V+ + +K S P Y SF+
Sbjct: 2 NPYIYLGGAILAEVIGTTLMKFSEGFTRLWP-------------SVGTIICYCASFWLLA 48
Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117
+A+ IA + + I++ + LS + + IG+M + G+ +I+ +
Sbjct: 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 118
putative transmembrane protein [Candidatus Liberibacter
3b5d_A_ 110
Multidrug transporter EMRE; helical membrane prote
99.94
2i68_A_ 137
Protein EMRE; transmembrane protein, small-multidr
99.81
>3b5d_A (A:) Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Back Hide alignment and structure
Probab=99.94 E-value=1.2e-26 Score=147.20 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
.+|+++++++++|+.|+..+|.+. ++++.+|.+..+.+|+.|++++..++|++|+|+||++|+|.|+
T Consensus 2 ~~w~~L~~Ai~~Ev~~t~~lk~s~-------------gft~~~~~~~~~~~~~~sf~~ls~alk~ip~gvAYAvW~GiG~ 68 (110)
T 3b5d_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 238999999999999999999874-------------8864578999999999999999999945774148998998899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.|+.|+.+|+.||+.+|+.+
T Consensus 69 ~~~~~~g~~~f~e~~s~~~~~gi~lIi~Gvv~l~l~s 105 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999379897999999999999998310147
>2i68_A (A:) Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Back Show alignment and structure
Probab=99.81 E-value=6.2e-20 Score=114.56 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|+|.+++.++.+++.++..+|.+. .+.+.+|.+.+..++.++++++..++++.|.+++||++++.+.
T Consensus 2 ~~~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~~~ 68 (137)
T 2i68_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 068999999999999999999873-------------8863889999999999999999999965884239999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++++.||+|+++|++|+++++.++
T Consensus 69 v~~~i~a~~~l~E~lt~~~~lG~~lii~Gv~li~~~~ 105 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999379898999999999999999300157