HHsearch alignment for GI: 254780298 and conserved domain: TIGR00776
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=96.94 E-value=0.0062 Score=32.00 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 999999999999999999999----7033899999999999999999999938999989999----99999999999987
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVA----HFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAI----GIMFVMIGITLISF 115 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~----~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~----Gi~lIi~Gvili~~ 115 (118)
T Consensus 256 N~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~-SQ~~~i~stlGGI~~l~E~K~Kr~~~~~~~GiiliiiAa~~~g~ 334 (336)
T TIGR00776 256 NILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSL-SQLGVIISTLGGILILGEKKTKRELIAIVVGIILIIIAAVILGI 334 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87889999999999999846871068899999999-99999999987887630378752001454578998878999875