HHsearch alignment for GI: 254780298 and conserved domain: TIGR00950
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=96.98 E-value=0.014 Score=30.24 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999999999999999997-033899999999999999999999938999989999999999999999872
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAH-FSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~-~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
T Consensus 54 ~~~~l~g~~~~~~~~~~~f~a~~~~~~v~~a~-l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~ 128 (275)
T TIGR00950 54 LRLLLLGALQIGVFYVLYFVAVKRTLPVGEAA-LLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSD 128 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988722079999-9999989999999998715685299999999999999888627