Query gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs 109 out of 1140
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 15:32:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780298.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10650 multidrug efflux syst 100.0 7.8E-29 2E-33 158.2 11.4 103 1-116 7-109 (109)
2 PRK10452 multidrug efflux syst 100.0 1.2E-28 3E-33 157.4 12.2 104 1-117 2-105 (120)
3 PRK09541 emrE multidrug efflux 100.0 1.9E-28 4.8E-33 156.4 13.0 104 1-117 2-105 (110)
4 COG2076 EmrE Membrane transpor 100.0 1E-27 2.6E-32 152.9 13.4 104 1-117 2-105 (106)
5 PRK11431 quaternary ammonium c 100.0 1.4E-27 3.6E-32 152.1 12.8 104 1-117 1-104 (105)
6 PRK02971 hypothetical protein; 99.9 1.1E-25 2.9E-30 142.9 11.3 116 1-117 2-124 (129)
7 pfam00893 Multi_Drug_Res Small 99.9 1.1E-24 2.8E-29 138.0 11.1 93 1-106 1-93 (93)
8 TIGR03340 phn_DUF6 phosphonate 99.4 6.1E-12 1.6E-16 75.9 10.9 114 2-116 2-136 (281)
9 pfam05653 DUF803 Protein of un 99.4 3.7E-13 9.4E-18 81.8 3.6 112 5-117 11-124 (300)
10 COG2510 Predicted membrane pro 99.1 2.2E-10 5.6E-15 68.3 6.1 114 1-115 2-139 (140)
11 TIGR03340 phn_DUF6 phosphonate 98.8 1.9E-07 4.8E-12 54.0 11.6 69 44-113 213-281 (281)
12 pfam00892 EamA EamA-like trans 98.8 2E-07 5E-12 53.9 11.2 69 45-114 57-125 (126)
13 PRK11453 O-acetylserine/cystei 98.7 1.3E-06 3.2E-11 50.0 14.5 111 3-114 145-286 (299)
14 PRK11272 hypothetical protein; 98.7 1.2E-06 3.2E-11 50.0 14.1 113 4-117 155-289 (293)
15 pfam10639 UPF0546 Uncharacteri 98.6 1.8E-07 4.6E-12 54.1 6.5 97 17-113 12-111 (112)
16 TIGR00950 2A78 Carboxylate/Ami 98.5 5.1E-06 1.3E-10 47.0 13.1 108 3-111 141-275 (275)
17 KOG2922 consensus 98.5 1.9E-08 4.8E-13 58.9 0.2 100 16-116 36-137 (335)
18 PRK11453 O-acetylserine/cystei 98.4 2.3E-05 5.8E-10 43.9 13.8 114 2-116 5-133 (299)
19 COG0697 RhaT Permeases of the 98.3 1.5E-05 3.8E-10 44.8 10.8 73 43-116 71-144 (292)
20 PRK11689 hypothetical protein; 98.3 0.0001 2.6E-09 40.7 14.8 69 48-117 221-289 (295)
21 COG0697 RhaT Permeases of the 98.2 3.2E-05 8.2E-10 43.1 11.1 72 44-116 217-288 (292)
22 PRK10532 threonine and homoser 98.2 3.7E-05 9.4E-10 42.9 10.5 70 47-117 214-283 (293)
23 pfam02694 UPF0060 Uncharacteri 97.6 0.0022 5.6E-08 34.2 11.3 101 2-116 4-104 (107)
24 PRK11272 hypothetical protein; 97.5 0.0041 1E-07 32.9 14.2 68 47-116 76-144 (293)
25 PRK02237 hypothetical protein; 97.4 0.0023 6E-08 34.1 9.8 101 2-116 5-105 (108)
26 pfam04142 Nuc_sug_transp Nucle 97.3 0.0044 1.1E-07 32.7 10.3 71 45-116 20-90 (238)
27 pfam06800 Sugar_transport Suga 97.3 0.00026 6.7E-09 38.7 4.0 69 43-112 195-267 (268)
28 pfam03151 TPT Triose-phosphate 97.1 0.0097 2.5E-07 31.1 11.6 63 48-112 84-146 (149)
29 KOG4831 consensus 97.1 0.00064 1.6E-08 36.8 4.5 99 15-113 17-123 (125)
30 COG5006 rhtA Threonine/homoser 97.0 0.0053 1.4E-07 32.3 8.2 65 48-113 216-280 (292)
31 TIGR00950 2A78 Carboxylate/Ami 97.0 0.014 3.7E-07 30.2 10.7 74 42-116 54-128 (275)
32 TIGR00776 RhaT RhaT L-rhamnose 96.9 0.0062 1.6E-07 32.0 8.0 71 44-115 256-334 (336)
33 COG1742 Uncharacterized conser 96.8 0.009 2.3E-07 31.2 7.9 101 1-115 3-104 (109)
34 pfam08449 UAA UAA transporter 96.7 0.014 3.5E-07 30.3 8.4 36 80-115 262-297 (303)
35 pfam05653 DUF803 Protein of un 96.7 0.0063 1.6E-07 32.0 6.6 70 47-116 218-293 (300)
36 PRK11689 hypothetical protein; 96.5 0.035 9E-07 28.3 13.9 71 43-114 62-136 (295)
37 pfam06800 Sugar_transport Suga 96.5 0.0014 3.5E-08 35.2 1.8 70 47-116 49-122 (268)
38 COG2962 RarD Predicted permeas 96.4 0.039 9.9E-07 28.1 10.6 58 52-113 82-142 (293)
39 COG3169 Uncharacterized protei 96.2 0.051 1.3E-06 27.6 11.7 98 7-113 9-113 (116)
40 KOG2234 consensus 96.1 0.06 1.5E-06 27.2 11.9 66 50-116 100-165 (345)
41 KOG4510 consensus 95.6 0.0023 5.8E-08 34.1 -0.3 58 55-113 110-167 (346)
42 KOG4314 consensus 95.6 0.0086 2.2E-07 31.3 2.6 64 50-114 61-124 (290)
43 TIGR00776 RhaT RhaT L-rhamnose 95.6 0.1 2.6E-06 26.1 11.7 80 37-116 62-148 (336)
44 pfam04342 DUF486 Protein of un 95.4 0.12 3.1E-06 25.7 11.1 97 9-113 3-106 (108)
45 COG2962 RarD Predicted permeas 95.4 0.12 3.2E-06 25.7 9.6 74 42-116 211-284 (293)
46 COG4975 GlcU Putative glucose 94.3 0.007 1.8E-07 31.7 -0.8 64 51-115 218-285 (288)
47 KOG2765 consensus 94.1 0.093 2.4E-06 26.3 4.6 62 54-116 171-232 (416)
48 KOG3912 consensus 93.7 0.34 8.5E-06 23.6 8.3 64 52-116 96-159 (372)
49 pfam04657 DUF606 Protein of un 93.5 0.36 9.2E-06 23.4 8.7 67 42-112 65-139 (139)
50 KOG1441 consensus 90.4 0.41 1E-05 23.1 4.0 33 83-115 275-307 (316)
51 KOG1580 consensus 88.8 0.8 2E-05 21.7 4.5 32 81-112 279-310 (337)
52 TIGR00817 tpt Tpt phosphate/ph 77.0 1.4 3.6E-05 20.5 1.7 29 84-112 302-330 (346)
53 COG5070 VRG4 Nucleotide-sugar 75.4 4.6 0.00012 18.0 5.4 44 66-109 247-290 (309)
54 KOG1442 consensus 75.0 0.56 1.4E-05 22.5 -0.8 101 5-111 69-170 (347)
55 KOG1444 consensus 73.3 5.3 0.00014 17.7 9.3 67 48-115 83-149 (314)
56 pfam06027 DUF914 Eukaryotic pr 73.1 5.4 0.00014 17.7 12.0 73 41-115 228-305 (335)
57 KOG1583 consensus 71.2 1.7 4.3E-05 20.1 0.9 34 82-115 281-314 (330)
58 TIGR00688 rarD RarD protein; I 65.4 8.1 0.00021 16.8 4.1 64 47-114 76-142 (259)
59 COG3238 Uncharacterized protei 61.7 9.6 0.00024 16.5 9.9 65 52-116 77-147 (150)
60 PRK13499 rhamnose-proton sympo 55.2 13 0.00032 15.9 5.8 68 48-116 266-342 (345)
61 PRK08238 hypothetical protein; 36.7 26 0.00066 14.3 7.6 75 38-114 292-366 (481)
62 COG1030 NfeD Membrane-bound se 35.8 27 0.00069 14.3 6.3 72 34-114 225-296 (436)
63 TIGR02121 Na_Pro_sym sodium/pr 34.9 28 0.00072 14.2 7.4 106 5-114 344-457 (517)
64 COG3752 Steroid 5-alpha reduct 33.7 29 0.00075 14.1 6.8 66 40-107 12-77 (272)
65 KOG2766 consensus 33.5 0.9 2.3E-05 21.5 -5.7 35 79-113 114-148 (336)
66 KOG1582 consensus 32.1 31 0.0008 14.0 9.3 77 35-112 248-329 (367)
67 pfam06379 RhaT L-rhamnose-prot 25.6 42 0.0011 13.3 5.9 68 48-116 265-341 (344)
68 TIGR02916 PEP_his_kin putative 22.1 49 0.0013 13.0 5.0 39 75-115 246-286 (696)
69 pfam11381 DUF3185 Protein of u 21.6 17 0.00042 15.3 -1.0 14 11-24 6-19 (59)
70 TIGR00327 secE_euk_arch protei 20.6 40 0.001 13.4 0.8 31 27-57 22-52 (61)
No 1
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=99.96 E-value=7.8e-29 Score=158.25 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|.|.++.+++++|+.|+.++|.+. +|+|..|.+..+.+|..||++.+.++|++|+|+||++|+|.|+
T Consensus 7 m~~~yL~~AI~~EV~~t~~LK~S~-------------GFtk~~psi~~i~~y~~sf~~Ls~alk~iplgvaYAiWsGlGi 73 (109)
T PRK10650 7 VHAAWLALAIVLEIVANVLLKFSD-------------GFRRKILGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGI 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999999998888705-------------9777361999999999999999999921864889999985899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999938999989999999999999999872
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
+.+++.|+++|||++++.+++|+.+|+.||+++|+.
T Consensus 74 v~~~~~g~~~f~q~l~~~~~~Gi~lIi~GVv~lnLs 109 (109)
T PRK10650 74 AATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKLA 109 (109)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECC
T ss_conf 999999999967889889999999999988404249
No 2
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=99.96 E-value=1.2e-28 Score=157.42 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|.|+++.+++++|+.|+..+|.+. ++++.+|.+..+.+|++|++++..++|++|+|+||++|+|.|+
T Consensus 2 ~~Wl~L~lAI~~EV~gT~~LK~s~-------------gft~~~p~i~~~~~y~~sf~~Ls~alk~ipvgvAYAiWsGvG~ 68 (120)
T PRK10452 2 IYWILLALAIATEITGTLSMKWAS-------------VSEGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGI 68 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 889999999999999999989981-------------7887338999999999999999999811727999999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|..|++|+++|++||+++|.+|
T Consensus 69 ~~itlig~~~F~E~l~~~~~~gi~lIi~GVv~l~~gs 105 (120)
T PRK10452 69 LFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCC
T ss_conf 9999999999679897999999999998784042478
No 3
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=99.96 E-value=1.9e-28 Score=156.39 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
++|+++.+++++|+.|+.++|.+. +++|.+|.+..+.+|++|++++..++|++|+|+||++|+|.|+
T Consensus 2 ~~wl~L~~AI~~EV~gt~~lK~S~-------------GFt~~~ps~~~~~~y~~sf~~Ls~alk~ipvgvaYAiWsG~Gi 68 (110)
T PRK09541 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 268999999999999998769866-------------9866457999999999999999999963883568999987899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.+++|+.+|+.|++++|++|
T Consensus 69 ~~~~iig~~~f~e~~~~~~~lGi~lIi~Gvv~lnL~s 105 (110)
T PRK09541 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999679897999999999999898410035
No 4
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-27 Score=152.85 Aligned_cols=104 Identities=20% Similarity=0.357 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|+|+++++++++|+.|++.+|++. +++|..|.+..+.+|+.||++...++|++|+|+|||+|+|.|+
T Consensus 2 m~w~~L~lAi~~EV~~~~~lK~s~-------------gf~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~ 68 (106)
T COG2076 2 MAWIYLLLAILLEVVGTTLLKYSD-------------GFTRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGI 68 (106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 349999999999999999999985-------------4565343999999999999999999840852789999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++++.|++|+.+|++|++.+|..|
T Consensus 69 v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 69 VGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999976078477999999999999999863047
No 5
>PRK11431 quaternary ammonium compound-resistance protein SugE; Provisional
Probab=99.95 E-value=1.4e-27 Score=152.13 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|+|+++++++++|+.|+..+|.+. ++++..|.+..+.+|++|+++...++|++|+|+||++|+|.|.
T Consensus 1 MaW~~L~~Ai~~Ev~~t~~lk~s~-------------gft~~~p~i~~~~~~~~sf~~Ls~alk~lpvg~aYAvWsGiG~ 67 (105)
T PRK11431 1 MSWIILVIAGLLEVVWAVGLKYTH-------------GFSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGA 67 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 966999999999999999999886-------------7774599999999999999999999957987109999997999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.|++|+.+|+.||+.+|+.|
T Consensus 68 vg~~~iG~~~f~e~~~~~~i~~i~lIi~GVv~Lkl~S 104 (105)
T PRK11431 68 VGAAITGIVLLGESASPARLLSLALIVAGIIGLKLST 104 (105)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999179898999999999999998331146
No 6
>PRK02971 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=142.86 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 989999999999999999999530222221211223-----456666799999999999999999999970338999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADS-----TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVV 75 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~ 75 (118)
|+|++.+.++++.+.||+++|+|+.+.++.....+. .....++++..|+.+|++|+.||..+|++.|+|.|||+.
T Consensus 2 ~g~~~~l~SV~L~s~aQL~lK~gm~~lp~~~~~~~~~~~~l~~~~~~~~v~~Gl~~Y~lSmlcW~~aL~~l~LS~AYPll 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLGWGMSRLPLMSHLLDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYALL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 12899999999999999999987844898577787789999986237999999999999999999999542075541578
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999--389999899999999999999998724
Q gi|254780298|r 76 TSAIIIIATCLSSLI--WDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 76 s~~~~v~~~~~~~~~--f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
|.+ ++.+.+.++.. |+|++|+.|.+|+.+|+.|+.+++..+
T Consensus 82 SLs-YVlV~l~A~~Lp~F~E~~s~~K~lGv~lIi~Gv~lI~~p~ 124 (129)
T PRK02971 82 SLS-YALVYLAAMLLPGFNETFSLKKTLGVACIMLGVMLINLPT 124 (129)
T ss_pred HHH-HHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHEEEEECCC
T ss_conf 689-9999999999877378600899888999964112586563
No 7
>pfam00893 Multi_Drug_Res Small Multidrug Resistance protein. This family is the Small Multidrug Resistance (SMR) family. Several members have been shown to export a range of toxins, including ethidium bromide and quaternary ammonium compounds, through coupling with proton influx.
Probab=99.92 E-value=1.1e-24 Score=138.02 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|+|+++.+++++|+.|+.++|.+. +++|..|.+..+.+|++|+++...++|++|+|+||++|+|.|+
T Consensus 1 M~wl~L~~Ai~~Ev~~t~~lK~s~-------------gft~~~~~~~~~~~~~~sf~~Ls~alk~lpvgvAYAiW~GiG~ 67 (93)
T pfam00893 1 MNWILLVIAILLEVIGTILLKSSE-------------GFTKLWPSLGTIVGYGISFYLLSKALKSIPLGVAYAVWSGIGT 67 (93)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 967999999999999999889870-------------8764678999999999999999999966851989999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999993899998999999999
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFV 106 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lI 106 (118)
+.+++.|+++|||++|+.|++|+.+|
T Consensus 68 ~~~~~ig~~~f~e~~~~~~~~gi~LI 93 (93)
T pfam00893 68 VGTTLVGILLFGEPLSLKKIIGLALI 93 (93)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHEEC
T ss_conf 99999999994799988988771009
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.38 E-value=6.1e-12 Score=75.91 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH---HHH------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211---223------------------456666799999999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHF---ADS------------------TRFSDGKLFWLGFFFYAISFFTYI 60 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~ 60 (118)
...+.+.+-++-+.+|.+.|.+.++....... ... ......++...+..+...-+++..
T Consensus 2 a~~lvL~aA~lHA~WN~l~K~~~d~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~p~p~~~~w~~i~~S~~~h~~Y~~~L~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999995488810899999999999999999999998636899867899999999999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 61 ~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
.+.++-|+|++||+.-|+ -+.+++.+..++||+++..+++|+.+|+.|+.+++..
T Consensus 82 ~aY~~gdls~vYPiaRgs-Pllv~l~a~l~lgE~ls~~~~~Gi~li~~Gi~~l~~~ 136 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHCCCCCEECHHHCCC-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998358841111064157-6999999999974768898999999999999998401
No 9
>pfam05653 DUF803 Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function.
Probab=99.36 E-value=3.7e-13 Score=81.85 Aligned_cols=112 Identities=15% Similarity=0.217 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999953022222121--12234566667999999999999999999999703389999999999999
Q gi|254780298|r 5 ALLANVALGVLSSVFIKMSIIPPEAPPH--FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIII 82 (118)
Q Consensus 5 ~l~~~i~~~~~g~i~lK~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~ 82 (118)
+.+.+.++...+-+.+|.|..+.++.+. ..+..++.++|.+|.|+..++.+-.....|+...|.+...|+ ++.+.+.
T Consensus 11 lav~ss~~ig~s~~i~K~~~~r~~~~~~~~~~~g~~Yl~~~~Ww~G~~~m~~Gei~nF~Ay~FAPasLVtPL-galsvi~ 89 (300)
T pfam05653 11 LAVSSSIFIGSSFIIKKKGLLRLARGGMRAGEGGYGYLKEWLWWAGLLTMIVGEAANFAAYAFAPATLVTPL-GALSVII 89 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHH
T ss_conf 999876576245543159899988605656678731450829998789999866888999983179988624-1689999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999389999899999999999999998724
Q gi|254780298|r 83 ATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 83 ~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+++.+.+++||+++...++|..+++.|..++.+++
T Consensus 90 naila~~~L~E~l~~~~~~G~~l~i~GsvliV~~a 124 (300)
T pfam05653 90 SAVLSSFFLNEKLNLFGKLGCVLCIVGSTVIVIHA 124 (300)
T ss_pred HHHHHHHHHHCCCEEEEEEHEEEEEECEEEEEECC
T ss_conf 99999999726660100001010331304557427
No 10
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.08 E-value=2.2e-10 Score=68.32 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=86.7
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCC-CCH-HHH---------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899-99999999999999999530222221-211-223---------------------45666679999999999999
Q gi|254780298|r 1 MKWI-ALLANVALGVLSSVFIKMSIIPPEAP-PHF-ADS---------------------TRFSDGKLFWLGFFFYAISF 56 (118)
Q Consensus 1 M~wl-~l~~~i~~~~~g~i~lK~~~~~~~~~-~~~-~~~---------------------~~~~~~~~~~~~~~~~~~s~ 56 (118)
|+|+ +-+++-++-....++-|.|.+..++. ... ++. .+-....+.+.+-..-++|.
T Consensus 2 ~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 2 MAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 11799999999999899999997325669428999999999999999998627610356667521015549888999999
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999703389999999999999999999993899998999999999999999987
Q gi|254780298|r 57 FTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 57 ~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
+++.+|++.-+.|..-|+ +..+.+.+++.|+.++||++|.++|+|+.+|.+|++++++
T Consensus 82 l~Yf~ALk~G~as~VvPi-dk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 82 LLYFRALKKGKASRVVPL-DKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHCCCCCEEEEC-CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEEEEC
T ss_conf 999999964985558772-3111999999999995587878999999999857044756
No 11
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.77 E-value=1.9e-07 Score=54.01 Aligned_cols=69 Identities=16% Similarity=0.316 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
....+-.+-..++.+...|+++.|++.+-|+=. ..++...+.|+++|||+.+.+|+.|..+|.+|++++
T Consensus 213 ~~~~~G~~s~~sY~lvl~A~~~~pva~VaalRe-tSIlfa~l~g~~~lkE~~~~~Rl~~~~li~~Gvvll 281 (281)
T TIGR03340 213 SATLGGLMIGGAYALVLWAMTRLPVATVVALRN-TSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999981084265676998-899999999999977965098999999999979969
No 12
>pfam00892 EamA EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6.
Probab=98.75 E-value=2e-07 Score=53.93 Aligned_cols=69 Identities=26% Similarity=0.470 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 45 FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 45 ~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
...++....+++.+|..++++.|.+.+-.. ....-+.+.+.++.++||++++.+++|..++++|+.++.
T Consensus 57 ~~~g~~~~~~~~~l~~~~l~~~~a~~as~~-~~~~Pv~~~l~a~~~l~E~~~~~~~iG~~l~~~Gv~lv~ 125 (126)
T pfam00892 57 LYLGLFGTALGYLLYFYALKYVSASNASVI-TSLSPVFTLILSVLLLGEKLTLKQLLGIVLILLGVLLIL 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988389999999-998999999999999289998999999999999999993
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.72 E-value=1.3e-06 Score=50.01 Aligned_cols=111 Identities=13% Similarity=0.204 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHH-----------H------------------HHHHHHHHHHHH
Q ss_conf 9999999999999999999530222221211--22345-----------6------------------666799999999
Q gi|254780298|r 3 WIALLANVALGVLSSVFIKMSIIPPEAPPHF--ADSTR-----------F------------------SDGKLFWLGFFF 51 (118)
Q Consensus 3 wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~--~~~~~-----------~------------------~~~~~~~~~~~~ 51 (118)
-++.+.+.++-+.+++..|+-..+.++.+.. ..+.+ . .-......++.+
T Consensus 145 ~~l~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~llyl~i~~ 224 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999981178224999999999999999999999975831211100148889999999999999
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 52 YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 52 ~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
-.+++.+|...+++.+.+.+-+. .-..=+...+.|+.++||++++.+++|.++|+.|+.+-.
T Consensus 225 s~lay~~w~~~l~~~~a~~~s~~-~~l~Pv~av~~g~llLgE~lt~~~~iG~~lil~Gv~l~~ 286 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999996689999999-999989999999999199997999999999999999994
No 14
>PRK11272 hypothetical protein; Provisional
Probab=98.70 E-value=1.2e-06 Score=50.04 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-H-----------------HHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999530222221211-2-----------------23456-66---67999999999999999999
Q gi|254780298|r 4 IALLANVALGVLSSVFIKMSIIPPEAPPHF-A-----------------DSTRF-SD---GKLFWLGFFFYAISFFTYIM 61 (118)
Q Consensus 4 l~l~~~i~~~~~g~i~lK~~~~~~~~~~~~-~-----------------~~~~~-~~---~~~~~~~~~~~~~s~~~~~~ 61 (118)
++.+.+.++-+.+++..|.-..+.+..... . ..... .. ..-...++.+-+.++.+|..
T Consensus 155 ~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~g~~ll~~~~~~~~~~~~~~~~~~~~~l~yl~i~~t~iay~l~~~ 234 (293)
T PRK11272 155 ILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMY 234 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999871678888999999999999999999987476545678999999999999999999999999
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 62 VVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 62 aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
.+|+.+.+.+-.... ..=+...+.|+.++||+++.++++|..+|+.|+.+++.+.
T Consensus 235 ~l~~~~~~~as~~~~-l~Pv~a~l~g~~~LgE~l~~~~~iG~~lIl~gv~lv~~~k 289 (293)
T PRK11272 235 LLRNVRPALATSYAY-VNPVVAVLLGTGLGGERLSPIEWLALGVIVFAVVLVTLGK 289 (293)
T ss_pred HHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999749999999998-9999999999999399886999999999999999992721
No 15
>pfam10639 UPF0546 Uncharacterized protein family UPF0546. This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.56 E-value=1.8e-07 Score=54.11 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=80.2
Q ss_pred HHHHHHHCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999953022222121---1223456666799999999999999999999970338999999999999999999999389
Q gi|254780298|r 17 SVFIKMSIIPPEAPPH---FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 (118)
Q Consensus 17 ~i~lK~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E 93 (118)
|-++|+|....++... ..+.....++|....-+...-.+...+...+++.|+|.+-|+--+..++.+.+.++..-++
T Consensus 12 NPfirrgs~~~~~~~~~~~~~~~~~l~~n~~y~vPfllNqsGSv~f~~lL~~~~lSlaVPi~NslaF~fT~i~~~~lgek 91 (112)
T pfam10639 12 NPLLKRGSKGLENVKSPSFLLEFKFLFLRPKYLIPFLLNQSGSVVFFLLLGKTDLSLAVPIANSLAFVFTVLTGWLLGEK 91 (112)
T ss_pred CHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 58999761336864463399999999808699999999705689999987057704750023179999999999996366
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999
Q gi|254780298|r 94 PFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 94 ~~~~~~~~Gi~lIi~Gvili 113 (118)
..+.+.++|+.+++.|+.+.
T Consensus 92 ~~~~~t~lG~~Lv~~Gi~LC 111 (112)
T pfam10639 92 VLGRKTWLGMGLVVAGTALC 111 (112)
T ss_pred CCCHHHHHHHHHHHHCCEEE
T ss_conf 67457899998998050222
No 16
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=98.53 E-value=5.1e-06 Score=47.05 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHH------------------------HHHHHHH--HHHHHHHHHHHH
Q ss_conf 999999999999999999953022222-1211223------------------------4566667--999999999999
Q gi|254780298|r 3 WIALLANVALGVLSSVFIKMSIIPPEA-PPHFADS------------------------TRFSDGK--LFWLGFFFYAIS 55 (118)
Q Consensus 3 wl~l~~~i~~~~~g~i~lK~~~~~~~~-~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~s 55 (118)
-+....+..+=+.++++=|.-.++.+. ...+.+. ......+ ....++..-.++
T Consensus 141 ~~~~~~s~~~~A~g~v~~K~~~~~~~~~~~~~~~~~~l~~Gal~llp~~~~~~~~~~~~p~~~~~~g~~~yLg~~~t~l~ 220 (275)
T TIGR00950 141 LLLGLLSGISFALGTVLAKRLVKKEGPELLQFTGFGVLLIGALLLLPFAWLLGPNPQLLPATSLQWGALLYLGLIGTLLA 220 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999875206798742678999999999999999999845650111102469999999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999970338999999999999999999999389999899999999999999
Q gi|254780298|r 56 FFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGIT 111 (118)
Q Consensus 56 ~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvi 111 (118)
+..|.+.+|+.|.+.+ ++.+-...+.-.+.|..++||++|..||+|..+|+.|++
T Consensus 221 y~l~~~Gl~~V~~~~a-~~l~~~~P~~a~LLg~~~~g~~l~~~~l~g~~~i~~~~l 275 (275)
T TIGR00950 221 YFLWNKGLTLVDPSAA-SILALLEPLVALLLGLLILGETLSLIQLIGGALIIAAVL 275 (275)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9999987643470465-776646689999999999730467989999999999829
No 17
>KOG2922 consensus
Probab=98.50 E-value=1.9e-08 Score=58.93 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999530222221--211223456666799999999999999999999970338999999999999999999999389
Q gi|254780298|r 16 SSVFIKMSIIPPEAP--PHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 (118)
Q Consensus 16 g~i~lK~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E 93 (118)
+-+..|.+..+.++. ...++..++.+.+++|.|+..++.+-..-..+..+.|.+...|+ +..+++..++.+.+++||
T Consensus 36 sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPL-GAlsvi~saila~~~L~E 114 (335)
T KOG2922 36 SFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPL-GALSVIISAILASFFLKE 114 (335)
T ss_pred EHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 0345577789886412344679840556378997889999886755788750347663533-057788999999999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999872
Q gi|254780298|r 94 PFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 94 ~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
++++...+|..+.++|-.++-+|
T Consensus 115 kl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922 115 KLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHEEEEECCCEEEEEE
T ss_conf 88786453036786051799982
No 18
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.40 E-value=2.3e-05 Score=43.87 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--HHH---------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 89999999999999999999530222221211--223---------45666---679999999999999999999997-0
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHF--ADS---------TRFSD---GKLFWLGFFFYAISFFTYIMVVAH-F 66 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~--~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~~aL~~-~ 66 (118)
.|++++..++.=....+..|.+.++.++..-. +-. ....+ +.....++......+.+....++. .
T Consensus 5 ~~lL~l~~~~iWG~~f~~~K~~l~~~~Pl~~a~lRf~la~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 84 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGM 84 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999987899999998279999999999999999999999832585799999999999999999999999828
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33899999999999999999999938999989999999999999999872
Q gi|254780298|r 67 SVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 67 ~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
|-|.+-- .....-+.+.+.+.+++|||++.+|++|+.+-..|+.++...
T Consensus 85 ~ag~aal-i~~~~P~~~~lla~~~l~Erl~~~~~~Gi~l~~~Gv~ll~~~ 133 (299)
T PRK11453 85 PAGLASL-VLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 3889999-999899999999999868988688999999999988865237
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=1.5e-05 Score=44.75 Aligned_cols=73 Identities=19% Similarity=0.368 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999703389999999999999999999-9938999989999999999999999872
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSS-LIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~-~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
+....+..+......++..++++.+.+.+.++.+ ..-+.+.+.+. +++||+++++++.|+.+...|+.++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~p~~~~ll~~~~~~~e~~~~~~~~~~~~~~~Gv~li~~~ 144 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIG-LLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999998531999999999-9999999999999848877599999999999889864115
No 20
>PRK11689 hypothetical protein; Provisional
Probab=98.28 E-value=0.0001 Score=40.72 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+....++++++|-.++|+.+.+..-. .+=..=+..++.++.+++|++++..++|..+|+.|.++....|
T Consensus 221 ~g~~~g~af~~W~~al~~~~a~~~a~-l~yl~Pv~S~ll~~l~L~e~lt~~~~~G~~lI~~G~ll~~~~~ 289 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLAT-ASYFTPVLSSALAALLLSTPLSFSFWQGAAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997158999999-9999999999999999668752999999999999999999997
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.22 E-value=3.2e-05 Score=43.15 Aligned_cols=72 Identities=19% Similarity=0.403 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
....++...++++++|..++++.|.+.+.+.. ....+...+.++.+++|+++..+++|..+|+.|+.+.+..
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~~~~~iG~~li~~g~~~~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999866709999999-9999999999999948999688999999999999999643
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.16 E-value=3.7e-05 Score=42.86 Aligned_cols=70 Identities=7% Similarity=0.082 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999970338999999999999999999999389999899999999999999998724
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
.++..-.+.+.+...++|++|-+..- +.....=+..++.|+.++||++++.||+|+.+|+...+-..+.+
T Consensus 214 vavlssviPY~Le~~aLrrl~a~~fg-vL~slePa~Aal~G~llLgE~ls~~q~lGialVv~As~g~~lt~ 283 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFG-TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998789999999998537887999-99998899999999999568897999999999999999999705
No 23
>pfam02694 UPF0060 Uncharacterized BCR, YnfA/UPF0060 family.
Probab=97.57 E-value=0.0022 Score=34.19 Aligned_cols=101 Identities=6% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211223456666799999999999999999999970338999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v 81 (118)
+.++.+++.++|..|-.+.=.-.++ -++ +.+.......+..+.|...++..+-+.+|+...|.+++
T Consensus 4 s~~lF~~aal~EI~Gcyl~W~wlR~-------------~ks-~~~~~~g~~~L~~fg~l~Tl~p~~fGRvYAAYGGvyI~ 69 (107)
T pfam02694 4 TILLFVAAALCEIGGGYLVWLWLRE-------------NKS-IWLALPGAISLAVYGFLATLQPAAFGRVYAAYGGVFVC 69 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------------CCC-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH
T ss_conf 9999999999999999999999986-------------996-36899999999999999946941100699985309999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999872
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
...+=++.+=|.+.+..+++|.....+|+.++-..
T Consensus 70 ~Sl~W~w~vdg~~pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T pfam02694 70 LALMWGWVVDGVKPDLYDWIGALIALCGVLVIMYA 104 (107)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEC
T ss_conf 99999999748789677898599999838984115
No 24
>PRK11272 hypothetical protein; Provisional
Probab=97.46 E-value=0.0041 Score=32.90 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999-999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 47 LGFFFYAISF-FTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~-~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
.+..+..... .......++.+-+.+- +..+..-+.+.+.++ +|||+.+..+|+|+.+-..|+.++...
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~ss~~a~-ii~~~~Pi~~~l~~~-lf~er~~~~~~~gl~l~~~Gv~ll~~~ 144 (293)
T PRK11272 76 IGLLLLAVGNGLVTVAEHQNVPSGIAA-VVVATVPLFTLLFSR-LFGIRTRKLEWAGIAIGLAGIILLNSG 144 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999875488999-999887999999998-737778499999999999989998168
No 25
>PRK02237 hypothetical protein; Provisional
Probab=97.41 E-value=0.0023 Score=34.08 Aligned_cols=101 Identities=9% Similarity=0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999530222221211223456666799999999999999999999970338999999999999
Q gi|254780298|r 2 KWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 2 ~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v 81 (118)
+.++.+++.++|..|-.+.=.-.++. ++ +.+.......+..+.|...++..+-+.+|+...|.+++
T Consensus 5 s~~lF~laalaEI~Gcyl~w~wlR~g-------------ks-~~~~~~g~~~L~lfg~llTl~p~~~GRvYAAYGGvyI~ 70 (108)
T PRK02237 5 TILLFVLAALAEIGGCYLPWLWLREG-------------KS-AWWLLPGALSLALFGWLLTLQPAAFGRVYAAYGGVYIA 70 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC-------------CC-EEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH
T ss_conf 99999999999998888979988169-------------98-12099899999999999946912120089985229999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999872
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
...+=++.+=|.+.+..+++|.....+|+.++-..
T Consensus 71 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iIl~~ 105 (108)
T PRK02237 71 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMFA 105 (108)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEC
T ss_conf 99999999748899755898699999738873225
No 26
>pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human solute carrier family 35 member A1 transports CMP-sialic acid, solute carrier family 35 member A2 transports UDP-galactose and solute carrier family 35 member A3 transports UDP-GlcNAc.
Probab=97.33 E-value=0.0044 Score=32.72 Aligned_cols=71 Identities=13% Similarity=0.318 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 45 FWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 45 ~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
...--.+|...-.+...+++++|.++-. +..-.-++.+++++++++|.++++.||..+.+...|+.++...
T Consensus 20 ~aVPa~lY~~qN~l~~~~l~~l~~~t~q-vl~q~Kil~tA~~~~~~l~r~lS~~QW~AL~lL~~Gv~l~q~~ 90 (238)
T pfam04142 20 VAVPAFIYTLQNNLLYVALSNLDAATYQ-VTYQLKILTTALFSVLMLGRKLSWYQWASLLLLFLGVAIVQLD 90 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9899999999853999999809929999-9983799999999999986947599999999999999840357
No 27
>pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
Probab=97.32 E-value=0.00026 Score=38.72 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHH
Q ss_conf 7999999999999999999999703389999999999999999999993899998999----999999999999
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITL 112 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvil 112 (118)
+.-+..-.+++.+-+++..+.++.-+.++|.+ |=.+++.-++.|++++||+-+.+++ .|+.||++|.++
T Consensus 195 ~~nii~G~~w~ignl~~~~S~~~~Gvatafsl-SQl~VVISTlGGI~~L~EkKtkkem~~~i~G~iLIv~Gail 267 (268)
T pfam06800 195 WLNIIPGLFWGIGNLFMLISAQKVGVATAFSL-SQLGVVISTLGGIFFLGEKKTKKEMIAVIIGIILIIVGAVL 267 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEH-HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHEE
T ss_conf 99876569999999999862462180223457-76666997611234760357503577899988898633111
No 28
>pfam03151 TPT Triose-phosphate Transporter family. This family includes transporters with a specificity for triose phosphate.
Probab=97.15 E-value=0.0097 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.388 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999703389999999999999999999993899998999999999999999
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
|...+..+...+...-+.=|+.. .+..-.--+.+.+.|+.+|||++++.+++|+.+.+.|+..
T Consensus 84 g~~~f~~n~~~f~~i~~~s~lt~--~v~g~~K~~~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~ 146 (149)
T pfam03151 84 GVLAFLYNLSAFGLLGRTSPLTS--SVAGTVKRVVVIVLSVIIFGDPVTFLNILGLAIAILGVVL 146 (149)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999830358999--9999988888976755421896858999999999998985
No 29
>KOG4831 consensus
Probab=97.15 E-value=0.00064 Score=36.82 Aligned_cols=99 Identities=12% Similarity=0.152 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999953022222121--------122345666679999999999999999999997033899999999999999999
Q gi|254780298|r 15 LSSVFIKMSIIPPEAPPH--------FADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCL 86 (118)
Q Consensus 15 ~g~i~lK~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~ 86 (118)
.-|-++|+|....++..+ .++......++.-+.-+...-.+..++...|++.|.|.|-|+-.+..+.++...
T Consensus 17 ~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~ 96 (125)
T KOG4831 17 ATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIF 96 (125)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 56399998776676506805899999999999988699998999977468999999953982466540113679999877
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999938999989999999999999999
Q gi|254780298|r 87 SSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 87 ~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
|...-.|.-.....+|..+|++|+++.
T Consensus 97 G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831 97 GKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHE
T ss_conf 888542156652110000776413431
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0053 Score=32.34 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
++..-.+-+.+-+.+|+++|-+.=--+.| ..=...++.|+.++||++|..||+++.+|+....-.
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlS-LePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLS-LEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHCCCCHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99862310378999996077457899998-737999998999965779899999999999997123
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter; InterPro: IPR004779 Proteins in this entry contain between eight and ten predicted transmembrane regions and are thought to function as transporters. The best characterised of these proteins is PecM (P42194 from SWISSPROT) from Erwinia chrysanthemi. PecM is an integral membrane protein which influences the activity of the virulence regulator PecS, and appears to be necessary for the complete efflux of blue pigment indigoidine , . This emtry also includes some proteins predicted to be amino acid metabolite efflux pumps, and several proteins for which no functional predictions have been made.; GO: 0016021 integral to membrane.
Probab=96.98 E-value=0.014 Score=30.24 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999999999999999997-033899999999999999999999938999989999999999999999872
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAH-FSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~-~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
....+.+..+.+.-+.++..+.++ .|.+.|- +.....=+.+...+..+.||+.+.++++++.+-++|++++.-.
T Consensus 54 ~~~~l~g~~~~~~~~~~~f~a~~~~~~v~~a~-l~~~~~P~~~~~l~~l~~k~~~~~~~l~A~~l~l~G~~ll~~~ 128 (275)
T TIGR00950 54 LRLLLLGALQIGVFYVLYFVAVKRTLPVGEAA-LLLYLAPLYVTLLSDLLGKERPRKLVLLAAVLGLAGAVLLLSD 128 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988722079999-9999989999999998715685299999999999999888627
No 32
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=96.94 E-value=0.0062 Score=32.00 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 999999999999999999999----7033899999999999999999999938999989999----99999999999987
Q gi|254780298|r 44 LFWLGFFFYAISFFTYIMVVA----HFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAI----GIMFVMIGITLISF 115 (118)
Q Consensus 44 ~~~~~~~~~~~s~~~~~~aL~----~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~----Gi~lIi~Gvili~~ 115 (118)
=.+.|+.-+..++.+...+-+ +.-++.++.+ |=.+++.-++.|+++++|+-+.++.. |+.+|+++-.+..+
T Consensus 256 N~~~Gl~w~~~~f~y~~~~qp~PAq~~Gvat~F~~-SQ~~~i~stlGGI~~l~E~K~Kr~~~~~~~GiiliiiAa~~~g~ 334 (336)
T TIGR00776 256 NILSGLIWGIGNFFYLFSAQPIPAQKVGVATSFSL-SQLGVIISTLGGILILGEKKTKRELIAIVVGIILIIIAAVILGI 334 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87889999999999999846871068899999999-99999999987887630378752001454578998878999875
No 33
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.009 Score=31.22 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
Q ss_conf 9899999999999999999995302222212112234566667999999999999999999999703-389999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFS-VRIAQTVVTSAI 79 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~-ls~ayp~~s~~~ 79 (118)
+++++.+++-++|..|-.+.=.-.++. + .+.++......+..+.|...++..+ -|-+|+-..|.+
T Consensus 3 ~~~~~f~lAalaEI~Gcyl~WlWLR~g-------------k-s~~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvy 68 (109)
T COG1742 3 RSYLLFVLAALAEIGGCYLVWLWLRLG-------------K-SALWLLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVY 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------C-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
T ss_conf 878999999999973167879999738-------------7-32767778999999999997178022003788736367
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999993899998999999999999999987
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
++....-.+..=|.+.++.+|.|....++|+.++..
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEEEE
T ss_conf 799999999971767748875257999836213685
No 34
>pfam08449 UAA UAA transporter family. This family includes transporters with a specificity for UDP-N-acetylglucosamine.
Probab=96.74 E-value=0.014 Score=30.34 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999993899998999999999999999987
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
=..+.+.|.++|++++++.+|+|+.++..|+.+=+.
T Consensus 262 k~~sillSv~~F~~~lt~~~~~G~~lvf~G~~~y~~ 297 (303)
T pfam08449 262 KFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAY 297 (303)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998744996858999999999999999999
No 35
>pfam05653 DUF803 Protein of unknown function (DUF803). This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.0063 Score=31.96 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999970338999999999999999999999389--9998999----9999999999999872
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE--PFYWTTA----IGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E--~~~~~~~----~Gi~lIi~Gvili~~~ 116 (118)
....+-.......-++|+..|-++.+|+.--.....+.+.|.++||| +.+..++ .|...++.||.+++.+
T Consensus 218 ~lv~~~~~Qi~yLNkAL~~fdts~V~PiyyV~fT~~~Iiag~I~F~e~~~~~~~~i~~~~~Gf~~i~~GV~lL~~~ 293 (300)
T pfam05653 218 VVVTCVVTQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTILLGTFLLHAT 293 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 9999999999999999864687377237999999999972524543003698999999999999986610477634
No 36
>PRK11689 hypothetical protein; Provisional
Probab=96.50 E-value=0.035 Score=28.34 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999999999999999999703----38999999999999999999999389999899999999999999998
Q gi|254780298|r 43 KLFWLGFFFYAISFFTYIMVVAHFS----VRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 43 ~~~~~~~~~~~~s~~~~~~aL~~~~----ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
++.+.+..++..-.+++..++++.+ ..-+-.++..- =+.+.+.+..++||+++++++.|+.+-..|+.++-
T Consensus 62 ~~l~~g~~lf~~y~~~~~~~l~~a~~~~~a~~a~lIny~w-Pl~~~l~a~~~~~e~~~~~~~~g~~~~~~Gv~lv~ 136 (295)
T PRK11689 62 RYLIAGGLLFVSYEICLALSLGYANTRHQAIEVGMVNYLW-PSLTILFAVLFNGQKANWLIIPGLLLALVGVCWVL 136 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998722431359999999998-99999999997478764999999999999799856
No 37
>pfam06800 Sugar_transport Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.
Probab=96.46 E-value=0.0014 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999703389999999999999999999993899998999----9999999999999872
Q gi|254780298|r 47 LGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITLISFH 116 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvili~~~ 116 (118)
.+-++-.++...-..+.+++.+|.+-|+.++...+.+++.|.++|||=-+..++ +++.+|+.|+.+-+.+
T Consensus 49 isG~~WaiGQ~~Qf~s~~~~GVS~tmPiSTg~QLvg~sL~Gv~~fgEW~t~~~~~~G~~Al~liiiG~~lTs~~ 122 (268)
T pfam06800 49 ISGAFWAIGQIGQFKSFKLIGVSKTMPISTGFQLVGTSLFGVLVFGEWSTSMQKILGFLALILIIIGIYLTSLQ 122 (268)
T ss_pred HHHHHHHHHHHHHHEEEEEECCEEEEEEEHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 98999986343142252330210233102318999888998710044651789999999999999727137631
No 38
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.43 E-value=0.039 Score=28.13 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999---97033899999999999999999999938999989999999999999999
Q gi|254780298|r 52 YAISFFTYIMVV---AHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 52 ~~~s~~~~~~aL---~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
...+...++.|. +-+|.|..|=++-. .+.+.|..+||||+++.||+.+.+-.+||...
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL----~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPL----VNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHHHHHEECCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99777875053179853688767999899----99999999997144688999999999999999
No 39
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.051 Score=27.57 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHH
Q ss_conf 9999999999999995302222212112234566667999999999999999999999703-------389999999999
Q gi|254780298|r 7 LANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFS-------VRIAQTVVTSAI 79 (118)
Q Consensus 7 ~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~-------ls~ayp~~s~~~ 79 (118)
+-.+++-.++|+++..+= -+-++++..|+.+..++..+++++-+....-.-. .+..-.+..-+.
T Consensus 9 l~~vlLL~~SNvFMTFAW---------YghLk~~~~pl~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVIt 79 (116)
T COG3169 9 LYPVLLLIGSNVFMTFAW---------YGHLKFTNKPLVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVIT 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999995279999999---------98875247734477899866999999995851111154431999989999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999938999989999999999999999
Q gi|254780298|r 80 IIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 80 ~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
...-..+|.++++|++.+..+.+-.+|..|+.++
T Consensus 80 L~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 80 LAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999973841188999999999889885
No 40
>KOG2234 consensus
Probab=96.11 E-value=0.06 Score=27.22 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 50 FFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 50 ~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
..|.+.-...-.++++.|-.+-... .-.-+..+++++.++++++++++||..+.+-..|+.++...
T Consensus 100 ~iYalqNnl~yval~~ldaatyqVt-~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234 100 LIYALQNNLQYVALSNLDAATYQVT-YQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999861099999953995332125-66889999999999996033288999999999889987325
No 41
>KOG4510 consensus
Probab=95.64 E-value=0.0023 Score=34.12 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 55 SFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 55 s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
+....-.++++++++-|--+ +=+.=+.+.++++.++||+.+....+|...-+.||+++
T Consensus 110 gvmlmyya~~~mslaDA~vI-tFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI 167 (346)
T KOG4510 110 GVMLMYYALMYMSLADAVVI-TFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI 167 (346)
T ss_pred HHHHHHHHHHHCCHHHEEEE-EECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEE
T ss_conf 89999999962044103799-85273999999999975987589998877744158999
No 42
>KOG4314 consensus
Probab=95.62 E-value=0.0086 Score=31.31 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 50 FFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 50 ~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
++....-|.+..+|++++.|.+.++ +..+-..+.+.+++.+|+++.-.|++...+-+.|++.++
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai-~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314 61 IFWTGANYLYLLALKKISASDASAI-FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred EEEECCCCHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 9872577199999985386565799-870289999999987335000114999999857679998
No 43
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein; InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane.
Probab=95.61 E-value=0.1 Score=26.10 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CHHHHHHHHHHHHH
Q ss_conf 45666679999999999999999999997033899999999999999999999938999-------98999999999999
Q gi|254780298|r 37 TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPF-------YWTTAIGIMFVMIG 109 (118)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~-------~~~~~~Gi~lIi~G 109 (118)
.......+.+.+-.+=.++-.-...+++.+-+|.+-|+-+|.-.+.+++.|.++|||== -+...+++.++++|
T Consensus 62 F~l~~~~~gl~sG~~WalGQ~~q~~~~~~~GvS~tmPistG~QLv~~sL~gvivfgeW~~~~~~~~GRmt~lAl~liiiG 141 (336)
T TIGR00776 62 FSLTIFLVGLISGAFWALGQINQFKSMRYIGVSKTMPISTGLQLVGGSLFGVIVFGEWSTSIQILLGRMTLLALILIIIG 141 (336)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 12477888999999999875458777764020220145664899987877530122447631013054999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999872
Q gi|254780298|r 110 ITLISFH 116 (118)
Q Consensus 110 vili~~~ 116 (118)
|.+.+.+
T Consensus 142 v~lts~~ 148 (336)
T TIGR00776 142 VYLTSIS 148 (336)
T ss_pred HHHHHHH
T ss_conf 9997302
No 44
>pfam04342 DUF486 Protein of unknown function, DUF486. This family contains several proteins of uncharacterized function.
Probab=95.39 E-value=0.12 Score=25.69 Aligned_cols=97 Identities=16% Similarity=0.261 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCHHHHHHHHHHHHHH
Q ss_conf 9999999999999530222221211223456666799999999999999999999-------970338999999999999
Q gi|254780298|r 9 NVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVV-------AHFSVRIAQTVVTSAIII 81 (118)
Q Consensus 9 ~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL-------~~~~ls~ayp~~s~~~~v 81 (118)
.+.+-+.+|+++-.+= .++.......|+....+..-+++++-+.... +..++...-.+.......
T Consensus 3 ~i~LL~~SNiFMTfAW--------YGHLK~~~~~pl~~ail~SWgIAffEY~lqVPANRiG~~~~s~~qLKi~QEvItL~ 74 (108)
T pfam04342 3 TVLLLICSNVFMTFAW--------YGHLKYLNVKPLIIAALVSWGIAFFEYLLQVPANRIGYTVLSVGQLKIMQEVITLA 74 (108)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 5699999999999999--------99861566682999999999999999998775224422542799999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999938999989999999999999999
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
.=+..+.+++||++++....|-.++..++..+
T Consensus 75 VF~~Fsv~yl~e~l~~n~l~af~ci~~av~Fi 106 (108)
T pfam04342 75 IFVPFSVFYLRQPLRLNYLWAGLCLLGAVYFM 106 (108)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHE
T ss_conf 99999999948976589999999999878723
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.37 E-value=0.12 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679999999999999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
+...+..-..-.....++..+-|++|+|.. -+.+=.+=....+.+.++|||+++..|...-++|-+|.++....
T Consensus 211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~-G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTL-GFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999638889899999999752778999-99998799999999999817899889999999999999999889
No 46
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.31 E-value=0.007 Score=31.75 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHH
Q ss_conf 99999999999999703389999999999999999999993899998999----999999999999987
Q gi|254780298|r 51 FYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTA----IGIMFVMIGITLISF 115 (118)
Q Consensus 51 ~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~----~Gi~lIi~Gvili~~ 115 (118)
..+.+-..+..+-++.-+..++.+ |-.+.+..++.|++++||+-|.+++ .|+.+|++|.+++.+
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSl-SQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSL-SQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHHHHHHHHHHHHHHCEEEEEEH-HHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 887538899876022050124547-55200025412389983147636610354467999877666320
No 47
>KOG2765 consensus
Probab=94.11 E-value=0.093 Score=26.29 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 54 ISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 54 ~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
.+-+.+-.+|++-++.--.-+ |+..=+.+..++.++-+|+++..|.++..+-+.||++++.+
T Consensus 171 ~anl~~naALa~TsVAS~Til-SStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~ 232 (416)
T KOG2765 171 LANLTSNAALAFTSVASTTIL-SSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG 232 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 999888877642144321234-40216999999998284420099999999864257999914
No 48
>KOG3912 consensus
Probab=93.69 E-value=0.34 Score=23.56 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997033899999999999999999999938999989999999999999999872
Q gi|254780298|r 52 YAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 52 ~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
-..+..++-..|.....|. |-+.-|.-++.+.+++..++|.+++..||+|+.++++|++.+...
T Consensus 96 Di~gsslm~vgL~lTsASs-fQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912 96 DIAGSSLMYVGLNLTSASS-FQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEE
T ss_conf 8751489998888756789-998605052334998999986303024689999999646404542
No 49
>pfam04657 DUF606 Protein of unknown function, DUF606. This family includes several uncharacterized bacterial proteins.
Probab=93.51 E-value=0.36 Score=23.40 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6799999999999999999999970338999999999999999999999--------3899998999999999999999
Q gi|254780298|r 42 GKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLI--------WDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 42 ~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~--------f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
+||.+.|- ...+++-....+.--.+|+++.+ ...+..-.+.|..+ =++++|+.|++|+.+++.|+++
T Consensus 65 p~w~~lGG--~lGa~~V~~~~~~vp~lG~~~~~--~~~v~GQli~sl~iD~fGl~g~~~~~~~~~ri~G~~l~i~Gv~l 139 (139)
T pfam04657 65 PWWAWLGG--LLGAFYVTLNILLVPRLGAALTV--VLVIAGQLLMSLLIDHFGLFGLPKRPLSLTRLLGLLLMLAGVVL 139 (139)
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 74999989--99999999999998032489999--99999999999999964455888877889999999999999869
No 50
>KOG1441 consensus
Probab=90.35 E-value=0.41 Score=23.13 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999993899998999999999999999987
Q gi|254780298|r 83 ATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 83 ~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
+.+.|+++|+|++|+.+..|..+-+.|+.+=+-
T Consensus 275 vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441 275 VIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 998671345688854557879999999999999
No 51
>KOG1580 consensus
Probab=88.80 E-value=0.8 Score=21.72 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999993899998999999999999999
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
..+.++|.++|+.+++.+||+|..++..+...
T Consensus 279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580 279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999981686718889899999987535
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator; InterPro: IPR004696 Functionally characterised members of the 6-8 TMS Triose-phosphate Transporter (TPT) family are derived from the inner envelope membranes of chloroplasts and non-green plastids of plants. Under normal physiological conditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi) , . Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into the cytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by a channel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrate concentrations. Non-green plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated at carbon atom 2, particularly phosphoenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be a substrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substrate specificities overlap. TPT paralogues are also present in Saccharomyces cerevisiae, which are functionally uncharacterised. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=76.97 E-value=1.4 Score=20.52 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999993899998999999999999999
Q gi|254780298|r 84 TCLSSLIWDEPFYWTTAIGIMFVMIGITL 112 (118)
Q Consensus 84 ~~~~~~~f~E~~~~~~~~Gi~lIi~Gvil 112 (118)
-..|+++|+.|+++.+.+|..+-++|+.+
T Consensus 302 I~~S~~ff~t~i~~~~~~G~~iaiaG~fl 330 (346)
T TIGR00817 302 IVVSIVFFGTKISPVNVFGTGIAIAGVFL 330 (346)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 66663201486523578899999999999
No 53
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=75.45 E-value=4.6 Score=18.00 Aligned_cols=44 Identities=9% Similarity=0.205 Sum_probs=35.4
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 03389999999999999999999993899998999999999999
Q gi|254780298|r 66 FSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIG 109 (118)
Q Consensus 66 ~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~G 109 (118)
..-|.+|.+....+-...++.|..+|+|+.++.++..+.+=...
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred EHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 40253899988864174877555205886048889999999987
No 54
>KOG1442 consensus
Probab=75.01 E-value=0.56 Score=22.47 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999995-3022222121122345666679999999999999999999997033899999999999999
Q gi|254780298|r 5 ALLANVALGVLSSVFIKM-SIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIA 83 (118)
Q Consensus 5 ~l~~~i~~~~~g~i~lK~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~ 83 (118)
.++-..++-+.....-|. +.-+.++.+ +.+.....+..-.+.+.+...+--.+|++.+++.=|-= -++-.+++
T Consensus 69 cLvt~~~c~~ls~ls~k~~~~ftfp~~~-----ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvg-RsLttvFt 142 (347)
T KOG1442 69 CLVTTSICLVLSSLSVKYPGLFTFPSLQ-----LDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVG-RSLTTVFT 142 (347)
T ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCC-----CCHHHHHHHCCHHHEEEEEHHCCCEEHHHCCEEEEEEC-CCHHHHHH
T ss_conf 9999999999999886566422267665-----00798875222352110202005314100546899954-41334599
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999389999899999999999999
Q gi|254780298|r 84 TCLSSLIWDEPFYWTTAIGIMFVMIGIT 111 (118)
Q Consensus 84 ~~~~~~~f~E~~~~~~~~Gi~lIi~Gvi 111 (118)
.+.+..++|++-+..-..|..+|+.|-.
T Consensus 143 VlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442 143 VLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred HHHHHHHCCCCCCCCCCEEEHHHEEHHE
T ss_conf 8867741115533320100041103012
No 55
>KOG1444 consensus
Probab=73.29 E-value=5.3 Score=17.71 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999703389999999999999999999993899998999999999999999987
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
.-..|..+.+.-+..++++++..- ++.--...+.+++....+||-+.+.+-|..+...++|...-+.
T Consensus 83 ~~~lf~~~i~t~~~slk~lnVpm~-tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444 83 VSLLFVGMLFTGSKSLKYLNVPMF-TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHH-HHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999970144665675199-9985220999987677631767112599999999987776116
No 56
>pfam06027 DUF914 Eukaryotic protein of unknown function (DUF914). This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins.
Probab=73.13 E-value=5.4 Score=17.69 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66799999999999999999-9999703389999----999999999999999993899998999999999999999987
Q gi|254780298|r 41 DGKLFWLGFFFYAISFFTYI-MVVAHFSVRIAQT----VVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 41 ~~~~~~~~~~~~~~s~~~~~-~aL~~~~ls~ayp----~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
.++..++-+..|.++.+.+- .+=--+..|=|.- +.+ .=+...+.+.++|||++++.-.++-++|++|+++=++
T Consensus 228 W~~~~~~~~~gy~~~lf~~Ysl~P~vl~~ssAt~~NLSlLT--sd~y~v~~~i~~F~~~~~~LY~laF~lI~~Gl~iY~~ 305 (335)
T pfam06027 228 WDWEIVLLFAGFALCMFLFYSLMPILIKKTSATMFNLSLLT--SDMWSLLIGIFLFHYKVDWLYFLAFATIAIGLIIYSM 305 (335)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEC
T ss_conf 46316499999999999999988999996538887798887--6699999999862676608999999999986537872
No 57
>KOG1583 consensus
Probab=71.24 E-value=1.7 Score=20.14 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999993899998999999999999999987
Q gi|254780298|r 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 82 ~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
.-.+.|...|+.++++..|+|..++..|-.+-+.
T Consensus 281 vSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583 281 VSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9884203475488978999879999999999999
No 58
>TIGR00688 rarD RarD protein; InterPro: IPR004626 This uncharacterised protein is predicted to have many membrane-spanning domains..
Probab=65.41 E-value=8.1 Score=16.83 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999---970338999999999999999999999389999899999999999999998
Q gi|254780298|r 47 LGFFFYAISFFTYIMVV---AHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 47 ~~~~~~~~s~~~~~~aL---~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
..-...+.+...+..+. ...+.+..|-+.- ......|..++||+++..+++.+..-.+|++.-.
T Consensus 76 ~~~~l~g~~~~~~~W~~n~g~~l~~~~gy~~~p----~~~~~~g~~f~~~~~~~~~~~~~~~~~~g~~~~~ 142 (259)
T TIGR00688 76 LCGLLIGGNWWLFLWAVNNGFLLEASLGYLLNP----LVSVLLGRLFLKEGLSRLQWLAVILATLGVLVNL 142 (259)
T ss_pred HHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986323431034226650256566578889----9999987888741024789999999999999998
No 59
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.67 E-value=9.6 Score=16.46 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHHH-HH---CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997033899999--999999999999999-93---8999989999999999999999872
Q gi|254780298|r 52 YAISFFTYIMVVAHFSVRIAQTV--VTSAIIIIATCLSSL-IW---DEPFYWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 52 ~~~s~~~~~~aL~~~~ls~ayp~--~s~~~~v~~~~~~~~-~f---~E~~~~~~~~Gi~lIi~Gvili~~~ 116 (118)
...+++...-.+-.=+++.+-.+ --..-...-.++..+ +| +.+++..|++|++++.+|+.++..+
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 01225655457752323289999999999999999998611158875789789999999999999996011
No 60
>PRK13499 rhamnose-proton symporter; Provisional
Probab=55.23 E-value=13 Score=15.89 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997033---89999999999999999999993899998------9999999999999999872
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSV---RIAQTVVTSAIIIIATCLSSLIWDEPFYW------TTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~l---s~ayp~~s~~~~v~~~~~~~~~f~E~~~~------~~~~Gi~lIi~Gvili~~~ 116 (118)
+-.+--..+.++...-++++- .+.+|+.-++.++. .-.--+.+||=-.. .-++|+.+++.+++++.+.
T Consensus 266 aGv~Wy~qfffYg~G~s~mg~~~~~vsW~l~Ms~~vi~-sn~WGl~lkEWkgas~k~~r~l~~Gl~vlIls~vvvG~g 342 (345)
T PRK13499 266 AGVMWYLQFFFYAMGHAKIPAQYDYVSWMLHMSFYVLC-GGLVGLVLKEWKGASRRPVTVLSLGLVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999998998706666620599999999999-999998750216996031899999699999999998503
No 61
>PRK08238 hypothetical protein; Validated
Probab=36.71 E-value=26 Score=14.35 Aligned_cols=75 Identities=11% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 56666799999999999999999999970338999999999999999999999389999899999999999999998
Q gi|254780298|r 38 RFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 38 ~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
.+..++.+...+..|..-...|+.-+|++++=-...+ ++. ++.=.+.|....+-++|.+=..-..+......+++
T Consensus 292 a~~~~~~f~~~l~~Y~~lt~~YS~~LK~i~iiDv~~l-a~~-f~lRiiaG~~a~~i~~S~WLl~fs~f~fl~La~~K 366 (481)
T PRK08238 292 ALALSPAFLLVLLAYLVLTLAYSLRLKRKALIDVLTL-AGL-YTLRIIAGAVAVGVALSFWLLAFSMFFFLSLALVK 366 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9996799999999999999999999754267589999-989-99999852623077874999999999999999999
No 62
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=35.84 E-value=27 Score=14.28 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22345666679999999999999999999997033899999999999999999999938999989999999999999999
Q gi|254780298|r 34 ADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
.+...+..+|-+ ..++..++++..+.-+.. -+.. .-+++....+-..+++-.+....+.|+.|++.|++++
T Consensus 225 ~~ll~~ItdP~v--a~ILl~LG~~gLifel~s--pG~~-----vpg~iG~i~LlL~f~g~~~~~~~~~gllLiilG~iLi 295 (436)
T COG1030 225 ERLLNWITDPSV--ALILLLLGFLGLIFELLS--PGFG-----VPGIIGAILLLLGFYGLLFLGINWAGLLLIILGAILI 295 (436)
T ss_pred HHHHHHHCCCHH--HHHHHHHHHHHHHHHHHC--CCCC-----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999617289--999999999999999836--6765-----3079999999999998612561489999999999999
Q ss_pred H
Q ss_conf 8
Q gi|254780298|r 114 S 114 (118)
Q Consensus 114 ~ 114 (118)
-
T Consensus 296 v 296 (436)
T COG1030 296 V 296 (436)
T ss_pred H
T ss_conf 9
No 63
>TIGR02121 Na_Pro_sym sodium/proline symporter; InterPro: IPR011851 This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. ; GO: 0005298 proline:sodium symporter activity, 0031402 sodium ion binding, 0006814 sodium ion transport, 0015824 proline transport, 0016021 integral to membrane.
Probab=34.85 E-value=28 Score=14.19 Aligned_cols=106 Identities=9% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHH
Q ss_conf 99999999999999999530222221211223---456666799999999999999999999970338-----9999999
Q gi|254780298|r 5 ALLANVALGVLSSVFIKMSIIPPEAPPHFADS---TRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVR-----IAQTVVT 76 (118)
Q Consensus 5 ~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls-----~ayp~~s 76 (118)
.++.||.+...+|++-=-+...+--...+.+. ..-.+..=.++=+...+.+.+.-..|+ -|=| +.|| |+
T Consensus 344 AILAAIMSTisSQLLVsSSaltEDfYK~~~~~eka~aS~ke~v~vGR~~VlvvA~iA~~LA~--nP~s~vL~LVgYA-WA 420 (517)
T TIGR02121 344 AILAAIMSTISSQLLVSSSALTEDFYKAFLKKEKAEASQKELVMVGRLSVLVVAIIAIVLAM--NPDSSVLDLVGYA-WA 420 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHH-HH
T ss_conf 99999987687689875889999999875230227897654330667999999999999971--8879601013455-53
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999389999899999999999999998
Q gi|254780298|r 77 SAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114 (118)
Q Consensus 77 ~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~ 114 (118)
|.|-.+-++.=--+|.-|+|+.-.+- .+|+.++.++.
T Consensus 421 GFGaaFGPvvLlsLyWKrm~r~GAl~-GM~~Ga~TVi~ 457 (517)
T TIGR02121 421 GFGAAFGPVVLLSLYWKRMTRNGALA-GMVIGAVTVIV 457 (517)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHH
T ss_conf 31045778999986410003999999-99999999999
No 64
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=33.73 E-value=29 Score=14.09 Aligned_cols=66 Identities=5% Similarity=-0.065 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 66679999999999999999999997033899999999999999999999938999989999999999
Q gi|254780298|r 40 SDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVM 107 (118)
Q Consensus 40 ~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi 107 (118)
..+...+..+.........|..+.++-+-|..-..|++ +++.++.... +++|..+.++++=..|+.
T Consensus 12 ~~~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~-~~~~~a~~~~-l~~~~~~~r~~l~~~Lvt 77 (272)
T COG3752 12 NLMVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGG-GFVAVAVVLA-LLGEGDPRRRWLLLFLVT 77 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCC-HHHHHHHHHH-HHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999998741675411022043-2899999999-971886288999999999
No 65
>KOG2766 consensus
Probab=33.47 E-value=0.9 Score=21.48 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999938999989999999999999999
Q gi|254780298|r 79 IIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 (118)
Q Consensus 79 ~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili 113 (118)
++..+.+.+++++|.|-.+.|+.|+...+.|++.+
T Consensus 114 aip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvmv 148 (336)
T KOG2766 114 AIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMV 148 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEE
T ss_conf 44799999999999888620020387675246999
No 66
>KOG1582 consensus
Probab=32.12 E-value=31 Score=13.95 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=44.2
Q ss_pred HHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 2345666679-999999999-9999999999970338---9999999999999999999993899998999999999999
Q gi|254780298|r 35 DSTRFSDGKL-FWLGFFFYA-ISFFTYIMVVAHFSVR---IAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIG 109 (118)
Q Consensus 35 ~~~~~~~~~~-~~~~~~~~~-~s~~~~~~aL~~~~ls---~ayp~~s~~~~v~~~~~~~~~f~E~~~~~~~~Gi~lIi~G 109 (118)
.+..+..+|+ ..+-..+.. ..++.-..+|+.+.+. +|-.+.++- -..+-+.|..+|..+++.+..-+-.+|..|
T Consensus 248 a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR-KavTi~lSfllFsKPfT~qy~~~gllv~lg 326 (367)
T KOG1582 248 AWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR-KAVTILLSFLLFSKPFTEQYVWSGLLVVLG 326 (367)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5388872947677799999998676599999999983606878888878-789999999987673279875454999997
Q ss_pred HHH
Q ss_conf 999
Q gi|254780298|r 110 ITL 112 (118)
Q Consensus 110 vil 112 (118)
+.+
T Consensus 327 I~L 329 (367)
T KOG1582 327 IYL 329 (367)
T ss_pred HHH
T ss_conf 884
No 67
>pfam06379 RhaT L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.
Probab=25.57 E-value=42 Score=13.35 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997033---899999999999999999999938999------989999999999999999872
Q gi|254780298|r 48 GFFFYAISFFTYIMVVAHFSV---RIAQTVVTSAIIIIATCLSSLIWDEPF------YWTTAIGIMFVMIGITLISFH 116 (118)
Q Consensus 48 ~~~~~~~s~~~~~~aL~~~~l---s~ayp~~s~~~~v~~~~~~~~~f~E~~------~~~~~~Gi~lIi~Gvili~~~ 116 (118)
+-.+--..++.+...-.+++- -+.+++.-+.+++.-.+ --+.+||=- -..-++|+.+++.+++++.+.
T Consensus 265 aG~lWy~qfffYg~G~s~lg~~~~~~sW~l~Mal~vi~sn~-WG~~lkEWKgas~kt~~~l~~Gl~vlI~s~vVvG~G 341 (344)
T pfam06379 265 AGLMWYLQFFFYAWGHAKIPAQYDYMSWMLHMSFYVLCGGI-VGLLLKEWKCAGKKPVAVLCIGCLVIIIAANIVGLG 341 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998898736677512699999999999999-999988861576213589998699999999998333
No 68
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=22.15 E-value=49 Score=13.00 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999--93899998999999999999999987
Q gi|254780298|r 75 VTSAIIIIATCLSSL--IWDEPFYWTTAIGIMFVMIGITLISF 115 (118)
Q Consensus 75 ~s~~~~v~~~~~~~~--~f~E~~~~~~~~Gi~lIi~Gvili~~ 115 (118)
-+|+|.+..+..|.+ +||| +|.+..-+++|++|.+++.+
T Consensus 246 ~aGlYLL~mA~aGYy~RyFGG--~WG~~~q~~flfaa~~lL~~ 286 (696)
T TIGR02916 246 GAGLYLLLMAAAGYYLRYFGG--EWGDAFQLAFLFAAGLLLLV 286 (696)
T ss_pred HHHHHHHHHHHHCCCEECCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999884030022678--45899999999999999999
No 69
>pfam11381 DUF3185 Protein of unknown function (DUF3185). Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.58 E-value=17 Score=15.30 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999530
Q gi|254780298|r 11 ALGVLSSVFIKMSI 24 (118)
Q Consensus 11 ~~~~~g~i~lK~~~ 24 (118)
.+-+.|-+++=+|-
T Consensus 6 ~Llv~GivLl~~Gy 19 (59)
T pfam11381 6 ALLVLGIVLLYFGY 19 (59)
T ss_pred EHHHHHHHHHHHHH
T ss_conf 46986599998621
No 70
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic; InterPro: IPR008158 This family is the protein translocase SEC61 complex gamma subunit of the archaeal and eukaryotic type. It does not hit bacterial SecE proteins. Sec61 is required for protein translocation in the endoplasmic reticulum. The Sec61 complex (eukaryotes) or SecY complex (prokaryotes) forms a conserved heterotrimeric integral membrane protein complex and forms a protein-conducting channel that allows polypeptides to be transferred across (or integrated into) the endoplasmic reticulum (eukaryotes) or across the cytoplasmic membrane (prokaryotes) , . This complex is itself a part of a larger translocase heterotrimeric complex composed of alpha, beta and gamma subunits. The channel is a passive conduit for polypeptides. It therefore has to associate with other components that provide a driving force. The partner proteins in bacteria and eukaryotes differ. In bacteria, the translocase complex comprises 7 proteins , including a chaperone protein (SecB) an ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD) and SecF. The SecA ATPase interacts dynamically with the SecYEG integral membrane components to drive the transmembrane movement of newly synthesized preproteins . In yeast (and probably in all eukaryotes), the full translocase comprises another membrane protein subcomplex (the tetrameric Sec62/63p complex), and the lumenal protein BiP, a member of the Hsp70 family of ATPases. BiP promotes translocation by acting as a molecular ratchet, preventing the polypeptide chain from sliding back into the cytosol .; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane.
Probab=20.60 E-value=40 Score=13.44 Aligned_cols=31 Identities=6% Similarity=0.199 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2221211223456666799999999999999
Q gi|254780298|r 27 PEAPPHFADSTRFSDGKLFWLGFFFYAISFF 57 (118)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 57 (118)
-|.+..+......+.-..++.|++.|.+...
T Consensus 22 KP~~~EY~~v~Kv~~~g~~~vG~iGf~I~i~ 52 (61)
T TIGR00327 22 KPDKEEYLKVAKVTGIGIIIVGIIGFIIKII 52 (61)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987889999999999999998999999999
Done!