Query gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 118
No_of_seqs 109 out of 1140
Neff 6.8
Searched_HMMs 33803
Date Wed Jun 1 12:08:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780298.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3b5d_A Multidrug transporter 99.9 1.2E-26 3.7E-31 147.2 13.0 104 1-117 2-105 (110)
2 >2i68_A Protein EMRE; transmem 99.8 6.2E-20 1.8E-24 114.6 8.4 104 1-117 2-105 (137)
3 >2akh_Z Preprotein translocase 6.7 1.3E+02 0.004 10.6 4.9 21 1-21 1-21 (111)
4 >2vv5_A MSCS, small-conductanc 4.0 2.3E+02 0.0067 9.5 6.8 38 46-84 69-106 (110)
5 >1j0g_A Hypothetical protein 1 3.7 2.5E+02 0.0073 9.3 1.1 11 14-24 69-79 (92)
6 >2nq2_A Hypothetical ABC trans 3.5 2.7E+02 0.0079 9.1 6.8 26 6-31 70-95 (139)
7 >1afo_A Glycophorin A; integra 3.2 3E+02 0.0089 8.8 2.9 16 5-20 14-29 (40)
8 >1jb0_L Photosystem 1 reaction 3.1 3.2E+02 0.0094 8.7 5.8 52 4-56 47-98 (116)
9 >2r7k_A 5-formaminoimidazole-4 2.7 3.7E+02 0.011 8.4 2.6 17 87-103 78-94 (110)
10 >1jqg_A Carboxypeptidase A; Pr 2.6 3.8E+02 0.011 8.4 0.0 17 1-17 1-17 (91)
No 1
>>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* (A:)
Probab=99.94 E-value=1.2e-26 Score=147.20 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
.+|+++++++++|+.|+..+|.+. ++++.+|.+..+.+|+.|++++..++|++|+|+||++|+|.|+
T Consensus 2 ~~w~~L~~Ai~~Ev~~t~~lk~s~-------------gft~~~~~~~~~~~~~~sf~~ls~alk~ip~gvAYAvW~GiG~ 68 (110)
T 3b5d_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 238999999999999999999874-------------8864578999999999999999999945774148998998899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++|+.|+.|+.+|+.||+.+|+.+
T Consensus 69 ~~~~~~g~~~f~e~~s~~~~~gi~lIi~Gvv~l~l~s 105 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999379897999999999999998310147
No 2
>>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} (A:)
Probab=99.81 E-value=6.2e-20 Score=114.56 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 98999999999999999999953022222121122345666679999999999999999999997033899999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAII 80 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~ 80 (118)
|+|.+++.++.+++.++..+|.+. .+.+.+|.+.+..++.++++++..++++.|.+++||++++.+.
T Consensus 2 ~~~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~~~ 68 (137)
T 2i68_A 2 NPYIYLGGAILAEVIGTTLMKFSE-------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHC-------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 068999999999999999999873-------------8863889999999999999999999965884239999998999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999389999899999999999999998724
Q gi|254780298|r 81 IIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 (118)
Q Consensus 81 v~~~~~~~~~f~E~~~~~~~~Gi~lIi~Gvili~~~t 117 (118)
+.+++.|+++|||++++.||+|+++|++|+++++.++
T Consensus 69 v~~~i~a~~~l~E~lt~~~~lG~~lii~Gv~li~~~~ 105 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCC
T ss_conf 9999999999379898999999999999999300157
No 3
>>2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z (Z:)
Probab=6.71 E-value=1.3e+02 Score=10.55 Aligned_cols=21 Identities=19% Similarity=0.634 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSSVFIK 21 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~i~lK 21 (118)
+||+..+.-......|+...-
T Consensus 1 ~Kw~~~~~l~~~~~~~~~~~~ 21 (111)
T 2akh_Z 1 MKWVVVVALLLVAIVGNYLYR 21 (111)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
T ss_conf 907999999999999999997
No 4
>>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:1-110)
Probab=4.05 E-value=2.3e+02 Score=9.46 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999970338999999999999999
Q gi|254780298|r 46 WLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIAT 84 (118)
Q Consensus 46 ~~~~~~~~~s~~~~~~aL~~~~ls~ayp~~s~~~~v~~~ 84 (118)
+..+.-|..-+.....+|+...+++. |+.++.|...++
T Consensus 69 ~~~~~~~~i~~~~~~~~L~~~Gi~~s-~lla~~Gi~Gva 106 (110)
T 2vv5_A 69 LSALVRYGIIAFTLIAALGRVGVQTA-SVIAVLGAAGLV 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCST-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 99999999999999999986455468-899999999999
No 5
>>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:)
Probab=3.75 E-value=2.5e+02 Score=9.26 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=7.8
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999530
Q gi|254780298|r 14 VLSSVFIKMSI 24 (118)
Q Consensus 14 ~~g~i~lK~~~ 24 (118)
++|++++|+|.
T Consensus 69 tAG~vflkhgs 79 (92)
T 1j0g_A 69 TAGNVFLKHGS 79 (92)
T ss_dssp BHHHHHHHTCS
T ss_pred CCCHHHHHCCC
T ss_conf 33310112686
No 6
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:1-93,A:262-307)
Probab=3.54 E-value=2.7e+02 Score=9.11 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999995302222212
Q gi|254780298|r 6 LLANVALGVLSSVFIKMSIIPPEAPP 31 (118)
Q Consensus 6 l~~~i~~~~~g~i~lK~~~~~~~~~~ 31 (118)
++.+..+..+|.++|..-.++..++-
T Consensus 70 ~lvGa~LaiaG~imQ~l~RNPLAdFv 95 (139)
T 2nq2_A 70 LCVGAGLALSGVVLQGIFRNPLVNWV 95 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999999999986048989888
No 7
>>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} (A:)
Probab=3.19 E-value=3e+02 Score=8.84 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780298|r 5 ALLANVALGVLSSVFI 20 (118)
Q Consensus 5 ~l~~~i~~~~~g~i~l 20 (118)
++++++..++.|++++
T Consensus 14 lII~~vmAGvIGtILl 29 (40)
T 1afo_A 14 LIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999989999999
No 8
>>1jb0_L Photosystem 1 reaction centre subunit XI; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (L:39-154)
Probab=3.06 E-value=3.2e+02 Score=8.73 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999953022222121122345666679999999999999
Q gi|254780298|r 4 IALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISF 56 (118)
Q Consensus 4 l~l~~~i~~~~~g~i~lK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 56 (118)
+.+++++++..-|+...|.+..+.+.......+-.|+ +.++++++.....++
T Consensus 47 lv~IlT~~Ls~Yg~~s~~~~~~~~d~l~t~~GW~~Ft-~GF~iGg~GGa~~Ay 98 (116)
T 1jb0_L 47 LILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFT-AGFFVGAMGSAFVAF 98 (116)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHCCCHHHHHH
T ss_conf 9999999999961677788999821022700698872-021321252899999
No 9
>>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} (A:17-91,A:327-361)
Probab=2.69 E-value=3.7e+02 Score=8.40 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHCCCCCHHHHHHH
Q ss_conf 99993899998999999
Q gi|254780298|r 87 SSLIWDEPFYWTTAIGI 103 (118)
Q Consensus 87 ~~~~f~E~~~~~~~~Gi 103 (118)
|++.|+|++|..|-+..
T Consensus 78 s~l~~~epmS~GrRIA~ 94 (110)
T 2r7k_A 78 SFLYNGEPLSMGQRIAR 94 (110)
T ss_dssp HHHHHSSCCCHHHHHHH
T ss_pred CHHHCCCCCHHHHHHHH
T ss_conf 46530575056479999
No 10
>>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} (A:1-91)
Probab=2.64 E-value=3.8e+02 Score=8.36 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999
Q gi|254780298|r 1 MKWIALLANVALGVLSS 17 (118)
Q Consensus 1 M~wl~l~~~i~~~~~g~ 17 (118)
|+++++++..+..+.+.
T Consensus 1 Mk~l~l~~~~~~~~~~~ 17 (91)
T 1jqg_A 1 MKYLFIFCLFVAGVLAK 17 (91)
T ss_dssp -----------------
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 91799999999998701
Done!