RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein
[Candidatus Liberibacter asiaticus str. psy62]
(118 letters)
>gnl|CDD|32259 COG2076, EmrE, Membrane transporters of cations and cationic drugs
[Inorganic ion transport and metabolism].
Length = 106
Score = 29.6 bits (67), Expect = 0.18
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60
M WI LL + L V+ + +K S F+ L Y +SF+
Sbjct: 2 MAWIYLLLAILLEVVGTTLLKYS-------------DGFTRLWPSILTIVGYGLSFYLLS 48
Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISF 115
+ + + +A + T I+ + L++ E +G+ ++ G+ +
Sbjct: 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103
>gnl|CDD|147463 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane
calcium binding protein, which comes from an
alternatively spliced form of the same gene that
generates aspartyl beta-hydroxylase and junctin.
Aspartyl beta-hydroxylase catalyses the
post-translational hydroxylation of aspartic acid or
asparagine residues contained within epidermal growth
factor (EGF) domains of proteins.
Length = 232
Score = 28.7 bits (64), Expect = 0.39
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 55 SFFTYIMVVAHFSVRIAQTVV 75
SFFT+ MV+A V + VV
Sbjct: 11 SFFTWFMVIALLGVWTSVAVV 31
>gnl|CDD|111954 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 28.6 bits (64), Expect = 0.46
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 64 AHFSVRIAQTVVTSAIIIIATCLSSLIWD----EPFYWTTAIGIMFVMIGIT 111
AHF+V+I + + T +SS+ W +P I + V+ G +
Sbjct: 462 AHFTVKIGKDTQHYLTMQGFTLISSVDWYTPDFQPSEEPPPIPGLQVLGGSS 513
>gnl|CDD|38818 KOG3612, KOG3612, KOG3612, PHD Zn-finger protein [General function
prediction only].
Length = 588
Score = 28.2 bits (62), Expect = 0.56
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 17 SVFIKMSIIPPEAPPHFADSTRFSDGKLFW 46
SVF+ SI P S+ W
Sbjct: 296 SVFVGQSIREIRRCPLCYRSSNTLSLGDTW 325
>gnl|CDD|38780 KOG3572, KOG3572, KOG3572, Uncharacterized conserved protein,
contains DEP domain [Signal transduction mechanisms].
Length = 1701
Score = 26.6 bits (58), Expect = 1.5
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 20 IKMSIIPPEAPPHFADSTRFSDGKLFWLGFF 50
I++++ P P + F KL+WLGF
Sbjct: 1536 IRIALNPKVVP-ESDEREEFLLSKLYWLGFI 1565
>gnl|CDD|144477 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of the
aligned region. The family used to be known as DUF6.
Length = 126
Score = 26.8 bits (60), Expect = 1.6
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 44 LFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGI 103
L +LG F A+ + Y + + S A +V+TS + LS L+ E +GI
Sbjct: 56 LLYLGLFGTALGYLLYFYALKYVSASNA-SVITSLSPVFTLILSVLLLGEKLTLKQLLGI 114
Query: 104 MFVMIGITLISF 115
+ +++G+ LI
Sbjct: 115 VLILLGVLLILL 126
>gnl|CDD|111366 pfam02460, Patched, Patched family. The transmembrane protein
Patched is a receptor for the morphogene Sonic Hedgehog.
This protein associates with the smoothened protein to
transduce hedgehog signals.
Length = 801
Score = 25.0 bits (55), Expect = 4.4
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 42 GKLFWLGFFFYAISFFT------------YIMVVA------HFSV--RIAQTVVTSAIII 81
G LFW GF F +I T ++MV A SV R+ +T+ + I
Sbjct: 269 GLLFWFGFPFNSIVCVTPFLVLAIGVDDMFLMVHAWQRTTKTLSVKKRMGETLSEAGPSI 328
Query: 82 IATCLSSLIWDEPFYWTTAIGIMFVMIGITL 112
T L++++ +T I + +
Sbjct: 329 TITSLTNVLSFGIGTYTPTPAIQLFCLYTAV 359
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 25.1 bits (56), Expect = 4.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 36 STRFSDGKLFWLG 48
STRF+DG F LG
Sbjct: 363 STRFTDGGEFGLG 375
>gnl|CDD|36795 KOG1582, KOG1582, KOG1582, UDP-galactose transporter related
protein [Carbohydrate transport and metabolism].
Length = 367
Score = 24.9 bits (54), Expect = 5.2
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 43 KLFWLGFFFYAISFFTYIMVVAHFSVRIAQT--VVTSAIIIIATCLSSLIWDEPFYWTTA 100
+ + F F + + V+A + A VT+A + LS L++ +PF
Sbjct: 258 RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYV 317
Query: 101 IGIMFVMIGITL 112
+ V++GI L
Sbjct: 318 WSGLLVVLGIYL 329
>gnl|CDD|36271 KOG1053, KOG1053, KOG1053, Glutamate-gated NMDA-type ion channel
receptor subunit GRIN2A and related subunits [Inorganic
ion transport and metabolism, Amino acid transport and
metabolism, Signal transduction mechanisms].
Length = 1258
Score = 24.2 bits (52), Expect = 8.7
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 63 VAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLIS 114
V FSV +T ++ + +S + EPF + + + + + + I+
Sbjct: 530 VVDFSVPFVETGISVMVARSNGTVSPSAFLEPFSPSVWVMMFVMCLIVAAIT 581
>gnl|CDD|143916 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
Oxidoreductase.
Length = 398
Score = 24.1 bits (53), Expect = 9.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 78 AIIIIATCLSSLI 90
AI + TC+S LI
Sbjct: 77 AIFVYTTCVSELI 89
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.334 0.143 0.459
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,552,175
Number of extensions: 77785
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 134
Length of query: 118
Length of database: 6,263,737
Length adjustment: 81
Effective length of query: 37
Effective length of database: 4,513,408
Effective search space: 166996096
Effective search space used: 166996096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (23.6 bits)