RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} (A:) Length = 137 Score = 39.8 bits (93), Expect = 1e-04 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 13/117 (11%) Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60 +I L + V+ + +K S P Y SF+ Sbjct: 2 NPYIYLGGAILAEVIGTTLMKFSEGFTRLWP-------------SVGTIICYCASFWLLA 48 Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLISFHT 117 +A+ IA + + I++ + LS + + IG+M + G+ +I+ + Sbjct: 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 >3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* (A:) Length = 110 Score = 33.8 bits (78), Expect = 0.009 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 13/113 (11%) Query: 1 MKWIALLANVALGVLSSVFIKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYI 60 +I L + V+ + +K S F+ Y SF+ Sbjct: 2 NPYIYLGGAILAEVIGTTLMKFS-------------EGFTRLWPSVGTIICYCASFWLLA 48 Query: 61 MVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFYWTTAIGIMFVMIGITLI 113 +A+ IA + + I++ + LS + + IG+M + G+ +I Sbjct: 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII 101 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} (A:290-511) Length = 222 Score = 24.8 bits (54), Expect = 4.6 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 53 AISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDEPFY 96 A+S F+ + A + ++ TVV ++IA + + I D+ F Sbjct: 171 ALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFI-DDKFV 213 >2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:) Length = 214 Score = 24.1 bits (52), Expect = 7.4 Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 8/73 (10%) Query: 20 IKMSIIPPEAPPHFADSTRFSDGKLFWLGFFFYAISFFTYIMVVAHFSVRIAQTVVTSAI 79 ++ +IP E T + + G Y +S Y++ +T + Sbjct: 12 VRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVI--------TPETFSAIST 63 Query: 80 IIIATCLSSLIWD 92 I + Sbjct: 64 IGFLVYIVKKYGA 76 >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} (A:1-147) Length = 147 Score = 23.6 bits (51), Expect = 9.7 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 68 VRIAQTVVTSAIIIIATCLSSLIWDEPF 95 +I + A +I WDEP Sbjct: 9 GQIIRVPARXAATLILEPAGRCCWDEPV 36 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.334 0.143 0.459 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 929,279 Number of extensions: 35021 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 21 Length of query: 118 Length of database: 4,956,049 Length adjustment: 70 Effective length of query: 48 Effective length of database: 2,589,699 Effective search space: 124305552 Effective search space used: 124305552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 50 (23.3 bits)