RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (118 letters) >d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]} Length = 322 Score = 26.3 bits (57), Expect = 0.83 Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 7/38 (18%) Query: 41 DGKLFWLGFF-FYAI-----SFFTYIMVVAHFSVRIAQ 72 G +W G FY I S Y M V +A Sbjct: 282 TGYQYWYGLPNFYTITRYNHSTH-YAMAVWQLGQAVAL 318 >d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]} Length = 199 Score = 24.4 bits (53), Expect = 3.0 Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 53 AISFFTYIMVVAHFSVRIAQTVVTSAIIIIATCLSSLIWDE 93 A+S F+ + A + ++ TVV ++IA + + I D+ Sbjct: 148 ALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDK 188 >d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]} Length = 522 Score = 22.7 bits (48), Expect = 8.1 Identities = 5/16 (31%), Positives = 9/16 (56%) Query: 77 SAIIIIATCLSSLIWD 92 I + TC++ +I D Sbjct: 144 DMIAVSTTCMAEVIGD 159 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.334 0.143 0.459 Gapped Lambda K H 0.267 0.0605 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 460,561 Number of extensions: 18127 Number of successful extensions: 78 Number of sequences better than 10.0: 1 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 21 Length of query: 118 Length of database: 2,407,596 Length adjustment: 74 Effective length of query: 44 Effective length of database: 1,391,576 Effective search space: 61229344 Effective search space used: 61229344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 47 (22.2 bits)