HHsearch alignment for GI: 254780299 and conserved domain: COG1960
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism].
Probab=100.00 E-value=0 Score=431.11 Aligned_cols=331 Identities=25% Similarity=0.334 Sum_probs=288.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----HH--HCCHHHHHHHHHH
Q ss_conf 99999999679620337766664447637999999999830144531221356778999----98--5087889873012
Q gi|254780299|r 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMV----AL--MTTPRVHKDWAPK 177 (562)
Q Consensus 104 ~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~----~L--~~~~e~~~~~lp~ 177 (562)
T Consensus 42 ~~~~~~l~~~G~~~~~~p~e~GG~--~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~ 119 (393)
T COG1960 42 RELLRALAEAGLLGLTIPEEYGGL--GLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPR 119 (393)
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999997698667899666898--865456999999999866023367888888888766554206889999875266
Q ss_pred HCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCC-EEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC----
Q ss_conf 00100054426600155212355445888887866543-0278648966898451468634-21157999704699----
Q gi|254780299|r 178 IFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAIT-SQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG---- 251 (562)
Q Consensus 178 l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~-T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~---- 251 (562)
T Consensus 120 ~~~G~-------------~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~-~~lnG~K~~is~~~~ad~~~v~Ar~~~~~~~ 185 (393)
T COG1960 120 LASGE-------------LIGAFALTEPGAGSDLASLRTTAAVRDDGD-YVLNGQKIWISNAPVADWLLVLARTDPAPGK 185 (393)
T ss_pred HHCCC-------------HHHEEEECCCCCCCCCCCCCCEEEEECCCC-EEEEEEEEEECCCCCCCEEEEEEECCCCCCC
T ss_conf 52444-------------142235157877775323562499975996-8997378876688777779999865876666
Q ss_pred --CCEEEEEECC-CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --6179998775-89884034788630475545657727999869075---30077765799999973013335799999
Q gi|254780299|r 252 --RVGCFLVPRL-LEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSV 325 (562)
Q Consensus 252 --Gls~FlVp~~-~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~ 325 (562)
T Consensus 186 ~~gis~flV~~~~~~G-----v~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~ 260 (393)
T COG1960 186 HKGISLFLVPKDLTPG-----VSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQAL 260 (393)
T ss_pred CCCEEEEEEECCCCCC-----EEEECCCCCCCCCCCCCEEEEECCEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6752699987688997-----28625545567677861589976623428860677786299999989888999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998404622242353888899999999999999999999998872011103677765567999999999
Q gi|254780299|r 326 SGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCC 405 (562)
Q Consensus 326 G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~ 405 (562)
T Consensus 261 G~a~~al~~a~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~d~~~~~-------~~~~~~aK~~~~ 333 (393)
T COG1960 261 GIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDA-------GAEAAMAKLFAT 333 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHH
T ss_conf 9999999999999998564188632278999999999999999999999998876445524-------789999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCH
Q ss_conf 999999956998852130004551889850012232204622278999999831260
Q gi|254780299|r 406 KMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGT 462 (562)
Q Consensus 406 e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~~ 462 (562)
T Consensus 334 ~~~~~v~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~l~~~~ 390 (393)
T COG1960 334 EAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999999539421057864999998734553146769999999999972554