HHsearch alignment for GI: 254780299 and conserved domain: TIGR03203

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00  E-value=0  Score=450.64  Aligned_cols=324  Identities=16%  Similarity=0.160  Sum_probs=272.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHH--CCHHHHHHHHHHHCCC
Q ss_conf             9999999679620337766664447637999999999830144531221356778-999985--0878898730120010
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA-SMVALM--TTPRVHKDWAPKIFSR  181 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~-a~~~L~--~~~e~~~~~lp~l~s~  181 (562)
T Consensus        41 ~lw~~lae~G~~gl~ipEe~GG~G~~--~~~~~~v~Eelgr--~~~~~p~~~~~~~~~~~l~~~g~~~qk~~~Lp~l~~G  116 (378)
T TIGR03203        41 AVWGKLAEQGLLGLPFSEADGGFGAG--SVETMIVMEALGK--ALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDG  116 (378)
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf             99999997799876898655999947--9999999999987--5652788889999999999839999999766998389


Q ss_pred             CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCE
Q ss_conf             0054426600155212355445888887866543027864896689845146863-42115799970469------9617
Q gi|254780299|r  182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVG  254 (562)
Q Consensus       182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls  254 (562)
T Consensus       117 ~~-------------~~a~a~tEp~~gsd~~~~~t~a~~~gd~-~vlnG~K~~i~~~~~Ad~~lv~a~t~~~~~~~~gi~  182 (378)
T TIGR03203       117 SK-------------TFAFAQLEKNSRYDLGDVSTTAKKTGDG-WVIDGEKFVVLNGETADTLIVTARTKGARRDRTGIG  182 (378)
T ss_pred             CE-------------EEEEEECCCCCCCCHHHCEEEEEECCCE-EEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf             93-------------4798724888887612174599981882-797287301432666768999997788667778427


Q ss_pred             EEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999877589884034788630475545657727999869075---30077765799999973013335799999999999
Q gi|254780299|r  255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVS  331 (562)
Q Consensus       255 ~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~a  331 (562)
T Consensus       183 ~flV~~~~~G-----v~~~~~~~~~g~~---~~~v~f~~v~V~~~~~lg~~~~g~~~~~~~l~~~r~~~aa~a~G~a~~a  254 (378)
T TIGR03203       183 VFLVPAGAKG-----VTIKGYPTQDGLH---AADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDES  254 (378)
T ss_pred             EEEEECCCCC-----EEECCCCCCCCCC---CCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9986068996-----1455603656765---4444577830236650276324899999999998999999997799999


Q ss_pred             HHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998404622242353888899999999999999999999998872011103677765567999999999999999
Q gi|254780299|r  332 LAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAV  411 (562)
Q Consensus       332 l~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v  411 (562)
T Consensus       255 l~~av~Ya~~R~qFGrpIg~fQaIqh~lAdm~~~~e~ar~l~~~aa~a~~~~~~~~~~-----~~~a~AK~~a~eaa~~v  329 (378)
T TIGR03203       255 LKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERA-----NAIAAAKVQIGKSLKFV  329 (378)
T ss_pred             HHHHHHHHHHCEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf             9999999861806880557524899999999999999999999999998714981249-----99999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             956998852130004551889850012232204622278999999831
Q gi|254780299|r  412 IAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE  459 (562)
Q Consensus       412 ~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~  459 (562)
T Consensus       330 a~~aiQihGG~G~t~E~~~~~~~Rra~~~~~~~G~~~~h~~ria~a~g  377 (378)
T TIGR03203       330 GQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAAGG  377 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             999999865896960388999999999999861989999999998768