HHsearch alignment for GI: 254780299 and conserved domain: TIGR03203
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=0 Score=450.64 Aligned_cols=324 Identities=16% Similarity=0.160 Sum_probs=272.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHH--CCHHHHHHHHHHHCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778-999985--0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA-SMVALM--TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~-a~~~L~--~~~e~~~~~lp~l~s~ 181 (562)
T Consensus 41 ~lw~~lae~G~~gl~ipEe~GG~G~~--~~~~~~v~Eelgr--~~~~~p~~~~~~~~~~~l~~~g~~~qk~~~Lp~l~~G 116 (378)
T TIGR03203 41 AVWGKLAEQGLLGLPFSEADGGFGAG--SVETMIVMEALGK--ALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDG 116 (378)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999997799876898655999947--9999999999987--5652788889999999999839999999766998389
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCE
Q ss_conf 0054426600155212355445888887866543027864896689845146863-42115799970469------9617
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVG 254 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls 254 (562)
T Consensus 117 ~~-------------~~a~a~tEp~~gsd~~~~~t~a~~~gd~-~vlnG~K~~i~~~~~Ad~~lv~a~t~~~~~~~~gi~ 182 (378)
T TIGR03203 117 SK-------------TFAFAQLEKNSRYDLGDVSTTAKKTGDG-WVIDGEKFVVLNGETADTLIVTARTKGARRDRTGIG 182 (378)
T ss_pred CE-------------EEEEEECCCCCCCCHHHCEEEEEECCCE-EEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 93-------------4798724888887612174599981882-797287301432666768999997788667778427
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999877589884034788630475545657727999869075---30077765799999973013335799999999999
Q gi|254780299|r 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVS 331 (562)
Q Consensus 255 ~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~a 331 (562)
T Consensus 183 ~flV~~~~~G-----v~~~~~~~~~g~~---~~~v~f~~v~V~~~~~lg~~~~g~~~~~~~l~~~r~~~aa~a~G~a~~a 254 (378)
T TIGR03203 183 VFLVPAGAKG-----VTIKGYPTQDGLH---AADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDES 254 (378)
T ss_pred EEEEECCCCC-----EEECCCCCCCCCC---CCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986068996-----1455603656765---4444577830236650276324899999999998999999997799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998404622242353888899999999999999999999998872011103677765567999999999999999
Q gi|254780299|r 332 LAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAV 411 (562)
Q Consensus 332 l~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v 411 (562)
T Consensus 255 l~~av~Ya~~R~qFGrpIg~fQaIqh~lAdm~~~~e~ar~l~~~aa~a~~~~~~~~~~-----~~~a~AK~~a~eaa~~v 329 (378)
T TIGR03203 255 LKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERA-----NAIAAAKVQIGKSLKFV 329 (378)
T ss_pred HHHHHHHHHHCEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf 9999999861806880557524899999999999999999999999998714981249-----99999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 956998852130004551889850012232204622278999999831
Q gi|254780299|r 412 IAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE 459 (562)
Q Consensus 412 ~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~ 459 (562)
T Consensus 330 a~~aiQihGG~G~t~E~~~~~~~Rra~~~~~~~G~~~~h~~ria~a~g 377 (378)
T TIGR03203 330 GQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAAGG 377 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 999999865896960388999999999999861989999999998768