HHsearch alignment for GI: 254780299 and conserved domain: cd01152

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00  E-value=0  Score=477.77  Aligned_cols=346  Identities=17%  Similarity=0.197  Sum_probs=292.7

Q ss_pred             HHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             63436984620179985213656688999999999967962033776666444763799999999983014453122135
Q gi|254780299|r   76 MANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPS  155 (562)
Q Consensus        76 ~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~  155 (562)
T Consensus        14 ~~~~i~P~~~~~~~~~~~~~~-~~~~~~~~---~l~e~Gl~gl~vPe~~GG~G~--~~~~~~~v~Eelgr~~~~~~~~~~   87 (380)
T cd01152          14 LAAHLPPELREESALGYREGR-EDRRRWQR---ALAAAGWAAPGWPKEYGGRGA--SLMEQLIFREEMAAAGAPVPFNQI   87 (380)
T ss_pred             HHHHCCCCCCHHHHCCCCCCC-CCHHHHHH---HHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             997688865305635777643-32799999---999679787588824499999--999999999999975897427999


Q ss_pred             HHHHHHHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEE
Q ss_conf             6778999985--08788987301200100054426600155212355445888887866543027864896689845146
Q gi|254780299|r  156 VTSASMVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKW  233 (562)
Q Consensus       156 mt~~a~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kw  233 (562)
T Consensus        88 ~~~~~~~~l~~~gs~eqk~~~L~~l~~G~~-------------~~a~a~TEp~~GSd~~~~~T~A~~~g~~-~vlnG~K~  153 (380)
T cd01152          88 GIDLAGPTILAYGTDEQKRRFLPPILSGEE-------------IWCQGFSEPGAGSDLAGLRTRAVRDGDD-WVVNGQKI  153 (380)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HEEEEECCCCCCCCCHHCEEEEEEECCE-EEEEEEEE
T ss_conf             999999999987999999999999958982-------------0498847998877502084599996998-99974641


Q ss_pred             EEE-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCC
Q ss_conf             863-42115799970469------9617999877589884034788630475545657727999869075---3007776
Q gi|254780299|r  234 FLS-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLN  303 (562)
Q Consensus       234 f~s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g  303 (562)
T Consensus       154 ~it~a~~Ad~~~v~art~~~~~~~~gis~flV~~~~pG-----v~~~~~~~~~g--~~~~~~i~fd~v~Vp~~~llG~~g  226 (380)
T cd01152         154 WTSGAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPG-----VTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVN  226 (380)
T ss_pred             CCCCHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCC-----CEEECEEECCC--CCCCEEEEECCEEECHHHCCCCCC
T ss_conf             33340004544401202887666686267852279998-----44621032368--877224767773203121478888


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             57999999730133357999999999999999999840462224235388889999999999999999999999887201
Q gi|254780299|r  304 VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA  383 (562)
Q Consensus       304 ~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~  383 (562)
T Consensus       227 ~G~~~~~~~l~~~R~~~~----g~a~~~~~~a~~~a~~r~~~G~pl~~~q~vq~~la~m~~~iea~r~l~~~aa~~~d~g  302 (380)
T cd01152         227 DGWKVAMTTLNFERVSIG----GSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAG  302 (380)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             599999999999999999----9998766366899999986378755689999999999999999999999999999778


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHCCHHHHHCCCCHHHHHHHHH
Q ss_conf             1103677765567999999999999999956998852130004551--------88985001223220462227899999
Q gi|254780299|r  384 KSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS--------IARHYRESPANSILLGSGNAMVLDVL  455 (562)
Q Consensus       384 ~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~--------leRl~RDA~v~~I~EGt~~I~aldv~  455 (562)
T Consensus       303 ~~~~~-------~~a~aK~~a~e~a~~v~~~a~qi~Gg~G~~~~~~~~~~~~~~~er~~Rdar~~~I~eGt~ei~~~~Ia  375 (380)
T cd01152         303 KPPGA-------EASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIA  375 (380)
T ss_pred             CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             89836-------89999999999999999999998082522566766331002999999752078551309999999999


Q ss_pred             HHHC
Q ss_conf             9831
Q gi|254780299|r  456 NLLE  459 (562)
Q Consensus       456 r~l~  459 (562)
T Consensus       376 r~ll  379 (380)
T cd01152         376 ERLL  379 (380)
T ss_pred             HHHC
T ss_conf             8851