Query gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 562
No_of_seqs 322 out of 5006
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 16:56:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780299.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11561 isovaleryl CoA dehydr 100.0 0 0 1095.8 51.6 528 19-556 3-534 (538)
2 cd01154 AidB AidB. AidB is one 100.0 0 0 853.5 40.2 409 37-460 1-418 (418)
3 cd01153 ACAD_fadE5 Putative ac 100.0 0 0 526.7 33.6 364 80-458 13-406 (407)
4 cd01155 ACAD_FadE2 FadE2-like 100.0 0 0 517.6 32.4 353 81-460 19-394 (394)
5 cd01161 VLCAD Very long chain 100.0 0 0 511.6 31.4 332 104-461 59-407 (409)
6 KOG0137 consensus 100.0 0 0 498.5 30.7 462 53-545 64-558 (634)
7 KOG0139 consensus 100.0 0 0 497.0 22.7 330 81-448 57-398 (398)
8 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 0 0 479.4 32.4 324 105-458 36-371 (372)
9 PRK03354 crotonobetainyl-CoA d 100.0 0 0 480.7 29.9 339 81-461 26-378 (380)
10 cd01162 IBD Isobutyryl-CoA deh 100.0 0 0 477.8 30.8 345 80-460 20-374 (375)
11 cd01152 ACAD_fadE6_17_26 Putat 100.0 0 0 477.8 30.7 346 76-459 14-379 (380)
12 cd01157 MCAD Medium chain acyl 100.0 0 0 473.0 32.7 344 79-459 19-376 (378)
13 cd01151 GCD Glutaryl-CoA dehyd 100.0 0 0 478.0 28.4 326 105-460 48-382 (386)
14 cd01156 IVD Isovaleryl-CoA deh 100.0 0 0 461.0 33.5 328 105-460 37-376 (376)
15 cd01160 LCAD Long chain acyl-C 100.0 0 0 464.9 29.1 342 80-458 18-371 (372)
16 KOG0140 consensus 100.0 0 0 465.3 25.6 340 78-459 45-403 (408)
17 PRK12341 putative acyl-CoA deh 100.0 0 0 459.4 29.4 327 105-461 41-379 (383)
18 TIGR03204 pimC_large pimeloyl- 100.0 0 0 454.9 28.8 347 78-459 21-393 (395)
19 TIGR03203 pimD_small pimeloyl- 100.0 0 0 450.6 31.3 324 105-459 41-377 (378)
20 KOG0141 consensus 100.0 0 0 466.8 17.8 330 104-461 77-420 (421)
21 cd01158 SCAD/SBCAD Short chain 100.0 0 0 440.7 30.2 345 79-460 17-373 (373)
22 COG1960 CaiA Acyl-CoA dehydrog 100.0 0 0 431.1 32.4 331 104-462 42-390 (393)
23 cd00567 ACAD Acyl-CoA dehydrog 100.0 0 0 401.5 33.0 324 105-456 34-369 (369)
24 cd01163 DszC Dibenzothiophene 100.0 0 0 387.9 30.1 330 105-458 26-372 (377)
25 cd01159 NcnH Naphthocyclinone 100.0 0 0 364.5 30.3 320 105-459 26-369 (370)
26 PRK13026 acyl-CoA dehydrogenas 100.0 0 0 341.7 36.8 371 33-451 57-461 (771)
27 PRK09463 fadE acyl-CoA dehydro 100.0 0 0 339.8 35.4 370 33-451 58-462 (761)
28 KOG0138 consensus 100.0 0 0 328.2 24.1 330 98-460 86-426 (432)
29 KOG1469 consensus 100.0 2.4E-42 0 302.3 15.1 328 99-451 25-373 (392)
30 cd01150 AXO Peroxisomal acyl-C 100.0 1.7E-34 4.3E-39 249.6 31.8 303 146-461 94-445 (610)
31 pfam00441 Acyl-CoA_dh_1 Acyl-C 100.0 6.7E-33 1.7E-37 238.9 14.6 149 303-458 1-149 (150)
32 KOG0135 consensus 100.0 1.2E-26 3E-31 197.0 19.2 310 134-458 105-462 (661)
33 pfam08028 Acyl-CoA_dh_2 Acyl-C 99.9 3.5E-24 9E-29 180.3 12.9 130 318-447 1-133 (134)
34 KOG0136 consensus 99.9 8.1E-22 2.1E-26 164.5 18.3 299 148-461 105-449 (670)
35 pfam02770 Acyl-CoA_dh_M Acyl-C 99.5 1E-13 2.6E-18 110.1 5.6 51 199-250 1-52 (52)
36 COG2368 Aromatic ring hydroxyl 98.4 0.00012 3.1E-09 49.2 17.3 256 191-456 140-431 (493)
37 pfam02771 Acyl-CoA_dh_N Acyl-C 97.7 0.00011 2.9E-09 49.3 5.7 92 80-182 19-113 (113)
38 KOG0137 consensus 95.8 0.11 2.8E-06 29.4 8.7 27 496-522 539-565 (634)
39 pfam11794 HpaB_N 4-hydroxyphen 95.8 0.14 3.6E-06 28.6 14.7 75 191-266 133-221 (265)
40 TIGR02309 HpaB-1 4-hydroxyphen 88.2 1.6 4.2E-05 21.5 10.8 218 196-426 149-400 (487)
41 pfam03241 HpaB 4-hydroxyphenyl 88.0 1.7 4.3E-05 21.4 8.1 85 349-437 44-128 (205)
42 TIGR01282 nifD nitrogenase mol 73.4 2.1 5.5E-05 20.7 1.9 69 10-85 267-338 (521)
43 KOG0450 consensus 70.1 6.3 0.00016 17.5 3.7 109 1-124 201-311 (1017)
44 TIGR01074 rep ATP-dependent DN 63.9 5.9 0.00015 17.7 2.5 30 415-444 516-546 (677)
45 TIGR02093 P_ylase glycogen/sta 61.8 2.3 5.9E-05 20.4 0.1 17 163-179 365-382 (822)
46 TIGR00972 3a0107s01c2 phosphat 61.6 4.9 0.00012 18.3 1.7 73 448-523 149-227 (248)
47 pfam11859 DUF3379 Protein of u 60.7 9.7 0.00025 16.3 7.2 67 238-313 161-227 (232)
48 TIGR02040 PpsR-CrtJ transcript 59.4 5.9 0.00015 17.7 1.8 22 331-352 290-311 (453)
49 TIGR01862 N2-ase-Ialpha nitrog 58.4 3.5 8.9E-05 19.2 0.5 98 8-115 257-356 (510)
50 pfam12186 AcylCoA_dehyd_C Acyl 57.3 11 0.00028 15.9 7.2 47 490-538 44-96 (114)
51 COG5566 Uncharacterized conser 39.6 21 0.00053 14.1 5.7 43 407-449 62-106 (137)
52 COG2087 CobU Adenosyl cobinami 39.2 13 0.00033 15.4 1.0 17 421-437 131-147 (175)
53 TIGR00770 Dcu transporter, ana 38.6 21 0.00055 14.0 2.5 10 44-53 74-83 (447)
54 cd03796 GT1_PIG-A_like This fa 38.5 9 0.00023 16.5 0.0 28 423-450 256-286 (398)
55 pfam08877 MepB MepB protein. M 37.4 21 0.00054 14.0 1.8 55 234-289 49-103 (123)
56 COG2704 DcuB Anaerobic C4-dica 35.0 24 0.00062 13.6 2.2 19 346-364 191-209 (436)
57 TIGR01091 upp uracil phosphori 34.7 25 0.00063 13.6 1.9 11 154-164 84-94 (213)
58 pfam05428 CRF-BP Corticotropin 33.9 14 0.00036 15.2 0.4 13 223-236 114-126 (311)
59 pfam00289 CPSase_L_chain Carba 31.7 17 0.00043 14.7 0.5 32 414-447 73-105 (109)
60 TIGR01919 hisA-trpF bifunction 31.5 11 0.00029 15.8 -0.4 47 218-266 132-179 (246)
61 TIGR01960 ndhF3_CO2 NAD(P)H de 31.3 17 0.00044 14.6 0.6 16 419-434 384-399 (613)
62 TIGR01132 pgm phosphoglucomuta 31.2 19 0.00049 14.2 0.8 78 58-143 56-135 (553)
63 TIGR01075 uvrD DNA helicase II 29.8 29 0.00075 13.0 2.7 48 202-250 309-357 (741)
64 PRK13795 hypothetical protein; 28.7 31 0.00078 12.9 2.4 20 342-361 273-292 (630)
65 KOG2675 consensus 27.2 33 0.00083 12.7 8.1 50 207-258 310-359 (480)
66 PRK05800 cobU adenosylcobinami 26.9 30 0.00076 13.0 1.1 17 421-437 127-143 (170)
67 KOG1416 consensus 25.9 34 0.00088 12.6 1.4 18 533-550 410-427 (475)
68 KOG1321 consensus 25.7 35 0.00088 12.6 4.1 27 205-235 169-195 (395)
69 PRK13523 NADPH dehydrogenase N 25.7 9.4 0.00024 16.3 -1.6 12 101-112 81-92 (337)
70 cd02930 DCR_FMN 2,4-dienoyl-Co 25.0 11 0.00028 15.9 -1.4 23 94-116 70-92 (353)
71 PHA00728 hypothetical protein 25.0 30 0.00076 13.0 0.8 37 57-93 79-115 (153)
72 cd02929 TMADH_HD_FMN Trimethyl 24.6 10 0.00026 16.1 -1.6 16 99-114 81-96 (370)
73 cd04733 OYE_like_2_FMN Old yel 24.4 11 0.00028 15.9 -1.5 15 100-114 81-95 (338)
74 cd04735 OYE_like_4_FMN Old yel 24.0 11 0.00028 15.9 -1.5 16 99-114 76-91 (353)
75 TIGR02627 rhamnulo_kin rhamnul 23.8 32 0.00081 12.8 0.8 39 6-50 20-58 (460)
76 cd04747 OYE_like_5_FMN Old yel 23.8 14 0.00035 15.3 -1.1 18 98-115 75-92 (361)
77 COG1902 NemA NADH:flavin oxido 22.0 12 0.00031 15.6 -1.6 20 343-362 315-334 (363)
78 KOG3581 consensus 21.5 26 0.00067 13.4 -0.0 28 208-236 196-225 (363)
79 COG4815 Uncharacterized protei 21.4 42 0.0011 12.0 1.3 29 233-261 69-97 (145)
80 cd02933 OYE_like_FMN Old yello 20.8 13 0.00033 15.5 -1.7 13 101-113 77-89 (338)
81 COG2169 Ada Adenosine deaminas 20.7 43 0.0011 11.9 6.2 93 452-554 85-183 (187)
82 cd03869 M14_CPX_like Peptidase 20.5 44 0.0011 11.9 1.3 22 222-245 265-287 (405)
83 cd03867 M14_CPZ Peptidase M14- 20.3 44 0.0011 11.9 1.0 19 223-243 255-274 (395)
84 TIGR01073 pcrA ATP-dependent D 20.0 45 0.0011 11.8 2.8 19 326-344 473-491 (811)
No 1
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=1095.81 Aligned_cols=528 Identities=35% Similarity=0.555 Sum_probs=501.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEE
Q ss_conf 62110116788858998001678899999720-42110789999998501899999986343698462017998521365
Q gi|254780299|r 19 SDSLFALNQPPLFIGMNAYSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKV 97 (562)
Q Consensus 19 ~~~~~~~nq~~~~~g~n~~~~D~~l~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v 97 (562)
..||.|||||||+.|+|.|++|++|++++.++ ++|..++|..+|+.+||.++++|+++||+|||+|++||+||+|||+|
T Consensus 3 ~~TH~v~Nq~~~~~~~n~~~~D~~L~~a~~r~ga~~~~~~L~~~G~~~Gs~e~~e~~~~An~~~P~L~~~Dr~G~RiD~V 82 (538)
T PRK11561 3 WQTHTVFNQPIPLNNSNLFLSDGALCEAVTREGAGWDSDLLASIGQQLGTAESLELGRLANANPPELLRYDAQGQRLDDV 82 (538)
T ss_pred CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCE
T ss_conf 78732347999976876633588899999974777567999999998677999999998500898501508999867506
Q ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC-HHHHHHHHH
Q ss_conf 6688999999999967962033776666444763799999999983014453122135677899998508-788987301
Q gi|254780299|r 98 EFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTT-PRVHKDWAP 176 (562)
Q Consensus 98 ~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~~~-~e~~~~~lp 176 (562)
+|||+||+||+.++++|+|+++|+++. ++++|+++++++||++|+|.|++||++||++++++|+.+ |++.+.|.|
T Consensus 83 e~hpawh~Lm~~~~~~g~~~~~w~~~~----~~g~~v~raA~~yL~~q~e~G~~CPltMT~aa~~~L~~~~p~~~~~~~~ 158 (538)
T PRK11561 83 RFHPAWHLLMQGLCANRVHNLAWEEDA----RSGSFVARAARFMLHAQVEAGTLCPITMTFAATPLLLQMLPAPFQDWLT 158 (538)
T ss_pred EECHHHHHHHHHHHHCCCCCCCCCCCC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 657899999999997686555655677----6551999999999851356466682248799999998618398999876
Q ss_pred HHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf 20010005442660015521235544588888786654302786489668984514686342115799970469961799
Q gi|254780299|r 177 KIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCF 256 (562)
Q Consensus 177 ~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~Gls~F 256 (562)
+++|++||+++.|..+|.++++||+|||+||||||++++|+|+|.+||.|+|+|+|||+|+|+||+++|+||+++|+|||
T Consensus 159 ~l~s~~yD~~~~p~~~K~~~t~Gm~MTEkqGGSDV~an~T~A~~~~~g~YrL~G~KwF~Sa~~~D~~LvLAr~~gGLS~F 238 (538)
T PRK11561 159 PLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLVLAQAKGGLSCF 238 (538)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCHHEEEEEECCCCEEEE
T ss_conf 65335678122786202334432433257767641135259996699819999998885155500058886069955899
Q ss_pred EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98775898840347886304755456577279998690753007776579999997301333579999999999999999
Q gi|254780299|r 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAI 336 (562)
Q Consensus 257 lVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~ 336 (562)
+||++.|||++|+|+|+|+|||+|+|++||+||+|+++.++|||++|+|+++|++|+|++|++++++++|+||+++.+|+
T Consensus 239 lvPr~~~DG~~N~i~i~RLKdKLG~rs~pSaEve~~gA~a~lvGeegrGv~~I~~M~n~TRl~~ai~sag~mRrAl~~A~ 318 (538)
T PRK11561 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAI 318 (538)
T ss_pred EEEEECCCCCCCCEEEEEHHHHHCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97503689997855774333321687688289998880799835788578999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99840462224235388889999999999999999999999887201110367776556799999999999999995699
Q gi|254780299|r 337 HYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAM 416 (562)
Q Consensus 337 ~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Ai 416 (562)
+|+++|++||++|++||+++++|+||.+++|++++++|+++..+|+. .++.+.+++|++||++|+|+||.+..++++||
T Consensus 319 ~~a~~R~aFG~~L~d~PLm~~~Ladm~le~eaa~aL~~rlA~a~d~~-~~~~e~a~~RllTpiaK~~~~k~a~~~~~Eam 397 (538)
T PRK11561 319 YHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRR-ADAKEALWARLFTPAAKFVICKQGIPFVAEAM 397 (538)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99855750575353140599999999999999999999999974137-98678999999999999999712899999999
Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHCCC
Q ss_conf 88521300045518898500122322046222789999998312603799999999964254517789--9999873054
Q gi|254780299|r 417 ECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVI--TILRDSISLC 494 (562)
Q Consensus 417 qi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~~~~~~~l~~~l~~~~g~~~~~~~--~~l~~~~~~~ 494 (562)
|||||+||+||++++|+||||+||+|||||+|||||||+|++.|+|++++++++++....|..+..+. +.++..+..
T Consensus 398 E~~GG~GYiEe~~~pRl~RdA~VnsIWEGT~NV~aLDvLRa~~r~p~~~~~~~~e~~~~~g~~~~~d~~~~~l~~~l~~- 476 (538)
T PRK11561 398 EVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQPGVYDLLSEAFVEVKGQDRHFDRAVRQLQQRLRK- 476 (538)
T ss_pred HHHCCCEEECCCCCHHHHHCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-
T ss_conf 9846825733785066775180413355677358999999871190389999999987328877899999999988548-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 22137789999999999999999970857999999996400256554511434468899998
Q gi|254780299|r 495 KEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHSTHCMLHGRFNAAHIID 556 (562)
Q Consensus 495 ~~~e~~AR~~~e~la~~~~aalL~r~a~~~va~af~~~Rl~~~~~~~~g~l~a~~d~~~~~~ 556 (562)
+.|..+|+++++|++++|+++|+||++++|+++||++||+..++. +||+..|...++.
T Consensus 477 -~~e~~ar~~~~~~a~~~qa~~l~r~~~~~va~afc~~rl~~~~~~---~~~~~~~~~~~~~ 534 (538)
T PRK11561 477 -PAEEQGREITQQLFLLGCGAQMLRYASPPLAQAWCQMMLDTRGGV---RLSEQVQNDLLLR 534 (538)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC---CCCHHHHHHHHHH
T ss_conf -607799999999999999999985099999999999971777982---3737777999987
No 2
>cd01154 AidB AidB. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehyrdogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=0 Score=853.53 Aligned_cols=409 Identities=41% Similarity=0.631 Sum_probs=385.7
Q ss_pred CCCCHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCC
Q ss_conf 01678899999720-42110789999998501899999986343698462017998521365668899999999996796
Q gi|254780299|r 37 YSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGL 115 (562)
Q Consensus 37 ~~~D~~l~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl 115 (562)
|++||+||++++++ +++++++|+++|+++++ ++++|++++|+|||+|++||+||+|+|+|++||+||++++.++++||
T Consensus 1 ~~~D~~L~~~l~~~~~~~~~~~l~~~G~~~~~-~~~~~~~~a~~~~P~l~~~d~~G~rid~v~~~~~~~~~~~~~~~~g~ 79 (418)
T cd01154 1 YLDDPVLQQTLRYFGDPEEEPDLSRLGELAGG-ELYELARLADRNPPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGV 79 (418)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHHHHHCCC
T ss_conf 99878899999985882202999999999879-99999987605898875658888868858828799999999997796
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHCCCCCCHHHCCCCCCC
Q ss_conf 203377666644476379999999998301445312213567789999850-8788987301200100054426600155
Q gi|254780299|r 116 HCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMT-TPRVHKDWAPKIFSREYDPTNKAPMQKT 194 (562)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~~-~~e~~~~~lp~l~s~~~~~~~~~~~~k~ 194 (562)
+++.|++... ++++.+++..||++++|.|++||++||++++++|.. .+|..++|+|+++|++++ .
T Consensus 80 ~~~~~~~~~~-----~~~~~~~a~~~l~~~~~~g~~cp~~mT~ga~~~L~~~g~e~~k~~l~~l~s~~~~---------~ 145 (418)
T cd01154 80 INIEDGPAGE-----GRRHVHFAAGYLLSDAAAGLLCPLTMTDAAVYALRKYGPEELKQYLPGLLSDRYK---------T 145 (418)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC---------C
T ss_conf 1367887667-----8739999999999887776513999999999999970909999987875257854---------3
Q ss_pred CCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCC------CCEEEEEECCCCCCCCC
Q ss_conf 212355445888887866543027864896689845146863421157999704699------61799987758988403
Q gi|254780299|r 195 SVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEG------RVGCFLVPRLLEDGSPN 268 (562)
Q Consensus 195 g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~------Gls~FlVp~~~pgg~~n 268 (562)
+|+++|+||||++|||+++++|+|++++||.|+|||+|||||++++|+++|+|||++ |+|||+||++.|||++|
T Consensus 146 ~~~g~~~mTEp~~GSDv~~~~T~A~~~~~g~y~LnG~Kwf~s~~~ad~~lVlArt~~~~~g~~GiS~FlVP~~~~dg~~n 225 (418)
T cd01154 146 GLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRN 225 (418)
T ss_pred CCCCCCCCCCCCCCCCHHHHHEEEEECCCCEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 31140247999844697763248998799979997899997781136899999947988887874589996316888868
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 47886304755456577279998690753007776579999997301333579999999999999999998404622242
Q gi|254780299|r 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGI 348 (562)
Q Consensus 269 ~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~ 348 (562)
+|+|.++|+|+|+|++||+||+|+++.+++||++|+||++++.++|.+|+.++++++|+|++|+++|++||++|+|||+|
T Consensus 226 g~~i~rl~~KlG~r~~~t~el~f~~~~~~llG~~g~G~~~~~~~ln~~Rl~~a~~a~G~ar~al~~A~~YA~~R~~FG~p 305 (418)
T cd01154 226 GYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP 305 (418)
T ss_pred CEEEECCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 64851334776877687479998570264267545318999999888986405878999999999999874124347977
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35388889999999999999999999999887201110-36777655679999999999999999569988521300045
Q gi|254780299|r 349 LIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR-SEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEE 427 (562)
Q Consensus 349 L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~-~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee 427 (562)
|++||+||++|++|.++++++++|+|++++.+|+.... +.+..++|+++|++|+|+|+.+.+++++|||+|||+||++|
T Consensus 306 i~~~~~v~~~La~m~~~~eaa~~l~~~~a~~~d~~~~~~~~~~~~~rl~t~iaK~~~~~~a~~~~~~amqi~GG~Gy~ee 385 (418)
T cd01154 306 LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEE 385 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 45369999999999999999999999999998436999767899888889999999999999999999997026013368
Q ss_pred CHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 518898500122322046222789999998312
Q gi|254780299|r 428 RSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 428 ~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
+|++|+|||++|++|||||+|||+||++|+|.|
T Consensus 386 ~~v~r~~RDa~i~~I~EGT~~Iq~ld~~Ral~k 418 (418)
T cd01154 386 WPVARLHREAQVTPIWEGTGNIQALDVLRVLVK 418 (418)
T ss_pred CHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCC
T ss_conf 369999974516611068999999999998529
No 3
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=0 Score=526.75 Aligned_cols=364 Identities=23% Similarity=0.368 Sum_probs=311.6
Q ss_pred CCCEECCCCCCCCCCC--EEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 6984620179985213--65668899999999996796203377666644476379999999998301445312213567
Q gi|254780299|r 80 NTPQLHAYGPGGERWD--KVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT 157 (562)
Q Consensus 80 ~~P~l~~~d~~G~r~d--~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt 157 (562)
-.|.-..+|+.+..+| .+.|+|.++++++...+.||.++.+++++++.+.+ .........-++....+..+...+.
T Consensus 13 i~P~~~e~dr~~~~~~~~~~~~p~~~~e~~~~~~e~Gl~g~~vPee~GG~G~~--~~~~~~~~eel~r~~~~~~~~~~~~ 90 (407)
T cd01153 13 LAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLP--ITVYSALAEIFSRGDAPLMYASGTQ 90 (407)
T ss_pred CCCCCHHHHHCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35772878635771579832678269999999997798888989000999968--9999999999984748899999999
Q ss_pred HHHHHHHH-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE
Q ss_conf 78999985-08788987301200100054426600155212355445888887866543027864896689845146863
Q gi|254780299|r 158 SASMVALM-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS 236 (562)
Q Consensus 158 ~~a~~~L~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s 236 (562)
.++...+. ++++|+++|+|++.+++. ++++++|||++|||+.+++|+|++++||.|+|||+|+|+|
T Consensus 91 ~~~~~i~~~Gt~eqk~~~Lp~i~~G~~-------------~~a~a~TEp~~GSd~~~~~T~A~~~gdG~~vlnG~K~~it 157 (407)
T cd01153 91 GAAATLLAHGTEAQREKWIPRLAEGEW-------------TGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFIS 157 (407)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEE
T ss_conf 999999985999999998999968972-------------3498855897678845011255674897189961243352
Q ss_pred CCC-CC----EEEEEEECCC------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCH
Q ss_conf 421-15----7999704699------617999877589884034788630475545657727999869075300777657
Q gi|254780299|r 237 SPM-SD----AFIMLAQVEG------RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVS 305 (562)
Q Consensus 237 a~~-ad----~~lVlArt~~------Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G 305 (562)
++. ++ +++|+||+++ |+|+|+||++.||++.+++++.+.++|+|+|+++++++.|+||++.++|++|+|
T Consensus 158 ~g~~a~~~~~~~~v~art~~~~~~~~g~s~flVp~~~~~~~~~G~~v~~~~~~~G~rg~~~~~l~f~dv~v~llG~~g~G 237 (407)
T cd01153 158 AGEHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGELIGEEGMG 237 (407)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCEECCCCCCCCC
T ss_conf 13346635579999984589876766733676457567888797488301144477778840001356331233677754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997301333579999999999999999998404622242353888--------89999999999999999999999
Q gi|254780299|r 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPV--------MKRAIADIALDIAAATALSFRLA 377 (562)
Q Consensus 306 ~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~--------v~~~LAdm~~~~eaa~~l~~~~A 377 (562)
+++++..++.+|+.+++.++|+++++++.+++|+++|+|||+||.++|. +|++|++|.+.+++++++.++++
T Consensus 238 ~~~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~~fg~pi~~~q~v~~~~~~~~~~~la~~~~~~e~~r~~~~~~a 317 (407)
T cd01153 238 LAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTA 317 (407)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77776333079999999999999999999999987777437611211320465149999999999999999999999999
Q ss_pred HHHHCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHH
Q ss_conf 887201110367-------7765567999999999999999956998852130004551889850012232204622278
Q gi|254780299|r 378 NSFDEAKSRSEE-------AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAM 450 (562)
Q Consensus 378 ~~~D~~~~~~~~-------~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~ 450 (562)
+..|.+.....+ .+.+.++++++|+++++.+.+++++|||+|||+||++|+|++|+|||+|+++||||||+||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~a~~~~s~aK~~ase~a~~v~~~a~ql~GG~Gy~~e~~ler~~RDar~~~I~eGt~eIq 397 (407)
T cd01153 318 TVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQ 397 (407)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99875456655277888777767778899999999999999999999731276711689999999876357226699999
Q ss_pred HHHHH-HHH
Q ss_conf 99999-983
Q gi|254780299|r 451 VLDVL-NLL 458 (562)
Q Consensus 451 aldv~-r~l 458 (562)
+++++ |.|
T Consensus 398 ~~~iigr~~ 406 (407)
T cd01153 398 ALDLIGRKI 406 (407)
T ss_pred HHHHHHHCC
T ss_conf 988798617
No 4
>cd01155 ACAD_FadE2 FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=0 Score=517.59 Aligned_cols=353 Identities=17% Similarity=0.159 Sum_probs=294.0
Q ss_pred CCEECCCCCCCC-CCCE-EECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCCHH
Q ss_conf 984620179985-2136-56688999999999967962033776666444763799999999983014---453122135
Q gi|254780299|r 81 TPQLHAYGPGGE-RWDK-VEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQL---EAGHLMSPS 155 (562)
Q Consensus 81 ~P~l~~~d~~G~-r~d~-v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~---~~g~~cp~~ 155 (562)
.|.-..+|+... ..|. ...++-+++|++.+.+.||.++.+++++++.+.+ .+......+-++.+ ...+.|-..
T Consensus 19 ~P~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~g~~~PeeyGG~G~~--~~~~~~~~Eel~r~~~~~~~~~~~~~ 96 (394)
T cd01155 19 YPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLT--NLEYAYLAEETGRSFFAPEVFNCQAP 96 (394)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 4865888866511555311361479999999996797788998634899989--99999999999762634210010324
Q ss_pred HHHHHHHHH--HCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCC-CCCCHHHCCEEEEECCCCEEEECCEE
Q ss_conf 677899998--508788987301200100054426600155212355445888-88786654302786489668984514
Q gi|254780299|r 156 VTSASMVAL--MTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKR-GGTDIAAITSQGQKISDGIYCLSGHK 232 (562)
Q Consensus 156 mt~~a~~~L--~~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~-~GSDv~~~~T~A~~~gdg~y~LnG~K 232 (562)
.+ +...+| .+++||+++|||++++++. +++++||||+ +|||+.+++|+|+++||+ |+|||+|
T Consensus 97 ~~-g~~~~l~~~Gteeqk~~~Lp~l~~Ge~-------------~~~~a~TEP~~agsD~~~~~T~A~~dgd~-~vlnG~K 161 (394)
T cd01155 97 DT-GNMEVLHRYGSEEQKKQWLEPLLDGKI-------------RSAFAMTEPDVASSDATNIECSIERDGDD-YVINGRK 161 (394)
T ss_pred HH-HHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HEEEEEECCCCCCCCHHHCEEEEEECCCE-EEEEEEE
T ss_conf 55-159999986999999998899847872-------------13888636987889678877898863998-9995379
Q ss_pred EEEECC---CCCEEEEEEECCC-------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCC--EEEEEECCEE---EE
Q ss_conf 686342---1157999704699-------6179998775898840347886304755456577--2799986907---53
Q gi|254780299|r 233 WFLSSP---MSDAFIMLAQVEG-------RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNA--TVELEFSNTF---GF 297 (562)
Q Consensus 233 wf~sa~---~ad~~lVlArt~~-------Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~--t~ei~f~~~~---~~ 297 (562)
||||++ ++++++|+|||++ ++|+|+||++.|| +++.+..+|+|.+.++ ++++.|+||+ .+
T Consensus 162 ~~is~a~~a~a~~~~v~art~~~~~~~~~~~s~flV~~~~pG-----v~~~~~~~~~G~~~~~~g~~ev~fddv~VP~~~ 236 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPG-----VTIIRPLSVFGYDDAPHGHAEITFDNVRVPASN 236 (394)
T ss_pred EECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCC-----EEECCCCCEECCCCCCCCCCEEEEEEECCCCEE
T ss_conf 711577566654799999606887777662689999726897-----462355421033478987423653123025210
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00777657999999730133357999999999999999999840462224235388889999999999999999999999
Q gi|254780299|r 298 LLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLA 377 (562)
Q Consensus 298 llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A 377 (562)
+||++|+||++++..+|.+|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|+||.++++++|+++++++
T Consensus 237 llG~~g~G~~~~~~~l~~~R~~~aa~~vG~a~~al~~a~~ya~~R~~fG~pi~~~q~v~~~ladm~~~ieaar~l~~~aa 316 (394)
T cd01155 237 LILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAA 316 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13778861999998878999999999855048899888898761111797766489999999999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 88720111036777655679999999999999999569988521300045518898500122322046222789999998
Q gi|254780299|r 378 NSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNL 457 (562)
Q Consensus 378 ~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~ 457 (562)
+.+|++.+.. ++..++++|+++++.+.+++++|||+|||+||++|+|++|+|||+++++|||||++||.+.+.|.
T Consensus 317 ~~~D~~~~~~-----~~~~~a~aK~~ase~a~~va~~aiqi~Gg~G~~~e~~~~r~~Rdar~~~I~eGt~EI~r~iIar~ 391 (394)
T cd01155 317 HMIDTVGNKA-----ARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARM 391 (394)
T ss_pred HHHHCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9984799831-----69999999999999999999999996397300654699999998752774234999999999999
Q ss_pred HCC
Q ss_conf 312
Q gi|254780299|r 458 LEK 460 (562)
Q Consensus 458 l~r 460 (562)
+-|
T Consensus 392 ~L~ 394 (394)
T cd01155 392 ELK 394 (394)
T ss_pred HHC
T ss_conf 859
No 5
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase (VLCAD). VLCAD acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD, which is a homodimer.
Probab=100.00 E-value=0 Score=511.63 Aligned_cols=332 Identities=20% Similarity=0.276 Sum_probs=286.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH--HHHHHH-HCCHHHHHHHHHHHCC
Q ss_conf 9999999967962033776666444763799999999983014453122135677--899998-5087889873012001
Q gi|254780299|r 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS--ASMVAL-MTTPRVHKDWAPKIFS 180 (562)
Q Consensus 104 ~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~--~a~~~L-~~~~e~~~~~lp~l~s 180 (562)
+++++...+.||.++.+++++++.+.+ ++..+...+.++. ..+...++.++. +..+.+ .+++||+++|+|++.+
T Consensus 59 ~e~~~~l~e~Gl~gl~vPee~GG~G~~--~~~~~~v~Eelg~-~~~~~~~~~~~~~~~~~~i~~~Gt~eqk~~~Lp~la~ 135 (409)
T cd01161 59 RKTLTQLKELGLFGLQVPEEYGGLGLN--NTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLAS 135 (409)
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 999999997799889989323999989--9999999999977-7155799999999999999986999999999899967
Q ss_pred CCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCC-EEEECCEEEEEE-CCCCCEEEEEEECC--------
Q ss_conf 00054426600155212355445888887866543027864896-689845146863-42115799970469--------
Q gi|254780299|r 181 REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG-IYCLSGHKWFLS-SPMSDAFIMLAQVE-------- 250 (562)
Q Consensus 181 ~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg-~y~LnG~Kwf~s-a~~ad~~lVlArt~-------- 250 (562)
++. ++++++|||++|||+.+++|+|++++|| +|+|||+|+|+| ++.+|+++|+|||+
T Consensus 136 Ge~-------------~~a~a~tEp~aGsD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Art~~~~~~~~~ 202 (409)
T cd01161 136 GEW-------------IAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATGSV 202 (409)
T ss_pred CCE-------------EEEEEECCCCCCCCHHCCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 996-------------8999953898788600082058991899889999998676775638899999988877888776
Q ss_pred -CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -961799987758988403478863047554565772799986907---5300777657999999730133357999999
Q gi|254780299|r 251 -GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVS 326 (562)
Q Consensus 251 -~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G 326 (562)
+|+|+|+||++.|| +++.+.++|+|+|+++++++.|+||+ .++||++|+|++.++..++.+|+.+++.++|
T Consensus 203 ~~gis~flV~~~~pG-----v~~~~~~~~~G~r~~~~~~v~f~dv~VP~~~llG~~g~g~~~~~~~l~~~R~~~aa~~~G 277 (409)
T cd01161 203 KDKITAFIVERSFGG-----VTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIG 277 (409)
T ss_pred CCCEEEEEEECCCCC-----CEECCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 687679999637898-----232575444577777762120230125555336667864021443106788888888889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999984046222423538888999999999999999999999988720111036777655679999999999
Q gi|254780299|r 327 GMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCK 406 (562)
Q Consensus 327 ~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e 406 (562)
+++++++.+++|+++|+|||+||++||.||++|+||.++++++|+++|++++.+|++.... ..+.++++|++++|
T Consensus 278 ~a~~al~~a~~ya~~R~qFG~pI~~~q~vq~~ladm~~~~eaar~l~~~aa~~~d~~~~~~-----~~~~aa~aK~~ase 352 (409)
T cd01161 278 TMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAE-----YQIEAAISKVFASE 352 (409)
T ss_pred HHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHH
T ss_conf 9999999877787412304975001699999999999999999999999999986799965-----13999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999995699885213000455188985001223220462227899999983126
Q gi|254780299|r 407 MAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 407 ~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
.+.+++++|||+|||+||++|+|++|+|||+++..|||||++||.+.+.|.+-|.
T Consensus 353 ~a~~va~~a~qi~GG~Gy~~e~~ver~~Rdar~~~I~eGt~ei~r~iIa~~~l~~ 407 (409)
T cd01161 353 AAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 9999999999965760014556999999973784764778999999999999885
No 6
>KOG0137 consensus
Probab=100.00 E-value=0 Score=498.54 Aligned_cols=462 Identities=21% Similarity=0.260 Sum_probs=369.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 11078999999850189999998634369846201799852136566889999999999679620337766664447637
Q gi|254780299|r 53 VVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQA 132 (562)
Q Consensus 53 ~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~ 132 (562)
-+.+++-.+++..-++ ..+..+...--.|++-.-+.|++++|... .-|+...+...+.|+.++.++.+++|.+...
T Consensus 64 ~v~k~v~~yPev~~~e-~~~~~~~~~~pl~r~f~e~~d~~k~d~~~--~~~~~t~e~l~elG~fgl~v~~e~~G~G~~n- 139 (634)
T KOG0137 64 LVTKDVFPYPEVITSE-QKELLEQFVLPLERFFEEVNDSKKNDKLG--KIEETTLEALRELGLFGLQVPSEFDGLGFCN- 139 (634)
T ss_pred HHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHCCEEECCCCCCCCCCCCH-
T ss_conf 2343315775658689-99998744425777641223043312312--5614579999970711520574247622345-
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----HHCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCC
Q ss_conf 9999999998301445312213567789999-----85087889873012001000544266001552123554458888
Q gi|254780299|r 133 HKIRAARLYLMAQLEAGHLMSPSVTSASMVA-----LMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRG 207 (562)
Q Consensus 133 ~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~-----L~~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~ 207 (562)
.++++.....++. -..|+++|+...... |.++++|+++|+|+|.|++. ..+++||||..
T Consensus 140 --tq~arl~e~~~~~-D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~-------------~~A~altE~s~ 203 (634)
T KOG0137 140 --TQYARLFEIVSVA-DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKL-------------IAAFALTEPSS 203 (634)
T ss_pred --HHHHHHHHCCCCC-CCCCEEEECCCHHHHEEEEEECCCHHHHHHHHHHHHCCCC-------------CCEEEEECCCC
T ss_conf --8888776104310-1362046312321101222210887889887776515880-------------11379964788
Q ss_pred CCCHHHCCEEEEECCC-CEEEECCEE-EEEECCCCCEEEEEEECC---------CCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 8786654302786489-668984514-686342115799970469---------96179998775898840347886304
Q gi|254780299|r 208 GTDIAAITSQGQKISD-GIYCLSGHK-WFLSSPMSDAFIMLAQVE---------GRVGCFLVPRLLEDGSPNGLCYQRLK 276 (562)
Q Consensus 208 GSDv~~~~T~A~~~gd-g~y~LnG~K-wf~sa~~ad~~lVlArt~---------~Gls~FlVp~~~pgg~~n~v~i~r~~ 276 (562)
|||+++.+|+|+..+| ++|+|||.| ||+|++.+|+|+|+|+|+ +++|+|||+++..| ++-.+.+
T Consensus 204 Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~G-----vt~G~~e 278 (634)
T KOG0137 204 GSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGG-----VTNGPPE 278 (634)
T ss_pred CCCCCCCEEEEEECCCCCEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCC-----CCCCCCH
T ss_conf 76544443344664778757874725898668542013655125668987644674379998511158-----6689810
Q ss_pred CCCCCCCCCEEEEEECCEE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
Q ss_conf 7554565772799986907---5300777657999999730133357999999999999999999840462224235388
Q gi|254780299|r 277 NKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQP 353 (562)
Q Consensus 277 ~klG~r~~~t~ei~f~~~~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p 353 (562)
.|||++++.++++.|+++. .++||++|+||+++++++|.+|+..++.++|.|+++++++.+|+..|.|||++|.++.
T Consensus 279 ~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~ 358 (634)
T KOG0137 279 KKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFG 358 (634)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHH
T ss_conf 32056666424454101555188744898862699999871577660688899999999999998605510481511102
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 88999999999999999999999988720111036777655679999999999999999569988521300045518898
Q gi|254780299|r 354 VMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARH 433 (562)
Q Consensus 354 ~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl 433 (562)
++|.++++|...+++..++.|-++..+|+..... .++.++|.|+|++|.++.|+++++||+||+||++|+|+||+
T Consensus 359 l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d-----~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~ 433 (634)
T KOG0137 359 LIQEKVAEMASKVYATESMLYLLSGLMDEVGAKD-----VQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERL 433 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-----EEEHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHH
T ss_conf 6899999999999999999999842445456615-----66147899998665799998864511055000356766777
Q ss_pred HHCCHHHHHCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH----------CCCCCCHHHH
Q ss_conf 500122322046222789999998-31260379999999996-42545177899999873----------0542213778
Q gi|254780299|r 434 YRESPANSILLGSGNAMVLDVLNL-LEKGTNLFEQLFSTLEQ-DLGSSGKKVITILRDSI----------SLCKEDKGLA 501 (562)
Q Consensus 434 ~RDA~v~~I~EGt~~I~aldv~r~-l~r~~~~~~~l~~~l~~-~~g~~~~~~~~~l~~~~----------~~~~~~e~~A 501 (562)
+||++++.|||||++|+.|++++. +++.+..+......+.. ..+-......+ +++.. ...+.++..+
T Consensus 434 LRD~ri~~I~egtndvLrlfiAltg~q~ag~~l~~~~r~~kn~n~gli~~~~~~-~~~~~g~~~~~~ls~hvhpsL~~sa 512 (634)
T KOG0137 434 LRDARILRIFEGTNDVLRLFIALTGLQHAGKHLATGVRALKNANPGLIGGKVSR-LRSLRGPGTGLYLSEHVHPSLQDSA 512 (634)
T ss_pred HHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHH-HHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 654230122137506899999999877666788877777613772100221222-4431488766553123487899999
Q ss_pred HHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999--9999708579999999964002565545114
Q gi|254780299|r 502 RFLTEKIALASSA--AALYRAGMNDIADVFLENRFLDNCHSTHCML 545 (562)
Q Consensus 502 R~~~e~la~~~~a--alL~r~a~~~va~af~~~Rl~~~~~~~~g~l 545 (562)
..+...+++..+. .+|.+|+.+++.+++...||++.....|+|.
T Consensus 513 q~~e~~~~~~~~~Ve~ll~k~~k~iv~~q~~l~rlA~~~~~iYam~ 558 (634)
T KOG0137 513 QKLESSLARFQQVVEKLLTKHGKGIVEEQSVLQRLANVAINIYAMV 558 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998853661478999999999999998887
No 7
>KOG0139 consensus
Probab=100.00 E-value=0 Score=496.97 Aligned_cols=330 Identities=21% Similarity=0.325 Sum_probs=285.9
Q ss_pred CCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHH
Q ss_conf 984620179985213656688999999999967962033776666444763799999999983014--453122135677
Q gi|254780299|r 81 TPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQL--EAGHLMSPSVTS 158 (562)
Q Consensus 81 ~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~--~~g~~cp~~mt~ 158 (562)
.|..+++|+.+ .|++. ..+..++.||.++..++++++.+.- +...++..+-.+-. +.+..|-+.-|.
T Consensus 57 ~Plv~~mD~~~------~~~~~---v~k~~fe~Glmgv~vpeeyGGsG~d--f~~~~~v~EEisk~d~sv~~~v~v~ntL 125 (398)
T KOG0139 57 KPLVREMDRES------RYPAS---VIKGLFELGLMGVEVPEEYGGSGLD--FFAAAIVIEEISKVDASVGVIVDVQNTL 125 (398)
T ss_pred CHHHHHHHHHC------CCCHH---HHHHHHHCCCCEEECCHHHCCCCHH--HHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 56877631214------58999---9998765372036467665887144--9999999999843486510588731332
Q ss_pred HHHHHHH-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEE-EEEE
Q ss_conf 8999985-0878898730120010005442660015521235544588888786654302786489668984514-6863
Q gi|254780299|r 159 ASMVALM-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLS 236 (562)
Q Consensus 159 ~a~~~L~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~K-wf~s 236 (562)
-..+.++ +++||++.|+|++.... .++++++||++|||+.++.|+|+++||. |+|||+| |++|
T Consensus 126 ~~~~i~~fGteeqK~~~~P~~~~d~--------------vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~-~viNGsKmWItN 190 (398)
T KOG0139 126 YLPLIIQFGTEEQKEKYLPKLTGDL--------------VGSFALSEPGAGSDAFALKTTAKKDGDD-YVINGSKMWITN 190 (398)
T ss_pred CCHHHHHHCCHHHHHHHCCHHHCCC--------------CCEEEECCCCCCCCHHHHHHHHHHCCCE-EEEECCEEEECC
T ss_conf 3068887473988745334021031--------------1104543787876357766467535772-897343541038
Q ss_pred CCCCCEEEEEEECC-----CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHH
Q ss_conf 42115799970469-----9617999877589884034788630475545657727999869075---300777657999
Q gi|254780299|r 237 SPMSDAFIMLAQVE-----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGP 308 (562)
Q Consensus 237 a~~ad~~lVlArt~-----~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~ 308 (562)
++.++.++|+|.++ +|+|||+||++.|| +++.+.+||+|+|++.||.+.|+||++ ++||++|+|+++
T Consensus 191 ~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~G-----l~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~Gyky 265 (398)
T KOG0139 191 AGEADWFLVFANADPSKGYKGITCFIVPRDTPG-----LSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKY 265 (398)
T ss_pred CCCCCEEEEEEECCHHHCCCCEEEEEEECCCCC-----CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCHHH
T ss_conf 643546899973684545576269996079887-----435884321366446544677414113504205677854489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99973013335799999999999999999984046222423538888999999999999999999999988720111036
Q gi|254780299|r 309 VEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE 388 (562)
Q Consensus 309 i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~ 388 (562)
.++.+|.+|+.++++.+|+++.|+++++.|+++|.|||++|.++|.+|++||+|++++|++|+|+|++|++.|++.+-..
T Consensus 266 Am~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~k 345 (398)
T KOG0139 266 AIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVK 345 (398)
T ss_pred HHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 98732753221046663577767876307899998845046667889999999999999999999999999875996478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHH
Q ss_conf 777655679999999999999999569988521300045518898500122322046222
Q gi|254780299|r 389 EAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGN 448 (562)
Q Consensus 389 ~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~ 448 (562)
| ++|+|++++|.|..+++.|+|++||.||+.|+|+||+|||++|..|||||+|
T Consensus 346 e-------AAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139 346 E-------AAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCEEEEEECCCCC
T ss_conf 9-------9999874215657789999999703472334618887533031014337789
No 8
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=0 Score=479.39 Aligned_cols=324 Identities=21% Similarity=0.235 Sum_probs=281.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
++++...+.||.++.+++++++.+. ..+..++...-++..+.+..+...++......|. +++|++++|+|++.+++
T Consensus 36 e~~~~~~e~G~~gl~vPee~GG~G~--~~~~~~~v~Eelg~~~~~~~~~~~~~~~~~~~l~~~g~~e~k~~~L~~l~~G~ 113 (372)
T TIGR03207 36 ELMRDMGEMGFIGPELPEEHGGLGM--GCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGE 113 (372)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 9999999779987899965689998--99999999999976276366899999999999998398999999879984998
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCEE
Q ss_conf 054426600155212355445888887866543027864896689845146863-42115799970469------96179
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGC 255 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls~ 255 (562)
. ++++++|||++|||+..++|+|++++|+ |+|||+|+|+| ++.+|+++|+|||+ .|+|+
T Consensus 114 ~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~gd~-~~lnG~K~~it~a~~Ad~~~v~art~~~~~~~~g~s~ 179 (372)
T TIGR03207 114 A-------------LFAIALTEPRGGSDAARLRLRAERDGDD-YVLNGEKTSISAADQADAAVVFARTGSEAEGARGISA 179 (372)
T ss_pred E-------------EEEEEECCCCCCCCCCCCCEEEEEECCE-EEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 0-------------0699955897777613471499994898-9996424044578767689998631764468783478
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||++.|| ++..+ .+++|.|+++++++.|+||++ ++||++|+|+..++..++.+|+.+++.++|++++|+
T Consensus 180 ~lV~~~~~G-----v~~~~-~~~~g~r~~~~~~l~fddv~Vp~~~llG~~g~G~~~~~~~~~~~r~~~aa~~~G~a~~al 253 (372)
T TIGR03207 180 FLVPMDLPG-----ITRNR-FDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAAL 253 (372)
T ss_pred EECCCCCCC-----CEEEC-CCCCCCCCCCCCEEEECCEEECHHHCCCCCCCHHHHHHHCCHHHHHHHCHHHHHHHHHHH
T ss_conf 832589998-----35525-446787777865167688756476437876642899975115899985866668999999
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|+|||+||++||.||++|+||.++++++|+++|++++..|++.+...+ ++++|+++++.+.+++
T Consensus 254 ~~a~~y~~~R~qfG~~I~~~Q~v~~~ladm~~~ieaar~~~~~Aa~~~d~g~~~~~~-------aa~aK~~a~e~a~~~~ 326 (372)
T TIGR03207 254 DETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSE-------AAMCKWWAPKLAYDVI 326 (372)
T ss_pred HHHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHHHHHHH
T ss_conf 999987640002796603159999999999999999999999999999688997699-------9999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5699885213000455188985001223220462227899999983
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
++|||+|||.||.++ |+||+|||+++++|||||++||.+.+.|-+
T Consensus 327 ~~a~qi~Gg~g~~~~-~~er~~Rdar~~~i~~Gt~ei~~~~i~r~~ 371 (372)
T TIGR03207 327 HQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARHR 371 (372)
T ss_pred HHHHHHHCCHHHCCH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 999998187664562-999999986578752059999999997306
No 9
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=0 Score=480.74 Aligned_cols=339 Identities=16% Similarity=0.194 Sum_probs=288.6
Q ss_pred CCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCH----HH
Q ss_conf 98462017998521365668899999999996796203377666644476379999999998301445312213----56
Q gi|254780299|r 81 TPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSP----SV 156 (562)
Q Consensus 81 ~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~----~m 156 (562)
+|+...+|+.+ .|++ ++++...+.||.++.+++++++.+. ..+...+..+-++. ..+|. ++
T Consensus 26 ~~~~~~~d~~~------~~p~---~~~~~l~e~G~~~l~vpe~~GG~g~--~~~~~~~v~eelg~----~~~~~~~~~~~ 90 (380)
T PRK03354 26 EAYFAECDRDS------VYPE---RFVKALADMGIDSLLIPEEHGGLDA--GFVTLAAVWMELGR----LGAPTYVLYQL 90 (380)
T ss_pred CHHHHHHHHCC------CCCH---HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHH----HCCCHHHHHHH
T ss_conf 56799998618------9989---9999999779987689842289999--99999999999876----27837899999
Q ss_pred HHHHHHHHH-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE
Q ss_conf 778999985-0878898730120010005442660015521235544588888786654302786489668984514686
Q gi|254780299|r 157 TSASMVALM-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL 235 (562)
Q Consensus 157 t~~a~~~L~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~ 235 (562)
..+..+++. ++++|+++|+|++.+++. ++++++|||++|||+.+++|++++++| .|+|||+|+|+
T Consensus 91 ~~~~~~i~~~gs~eqk~~~L~~~~~G~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~~g-~~~lnG~K~~v 156 (380)
T PRK03354 91 PGGFNTFLREGTQEQIDKIMAFRGTGKQ-------------MWNSAITEPGAGSDVGSLKTTYTRRNG-KVYLNGSKCFI 156 (380)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HHEEEECCCCCCCCCCCCEEEEEEECC-EEEEEEEEECC
T ss_conf 9999999984999999987388728765-------------515543268777885556258998699-89997179666
Q ss_pred E-CCCCCEEEEEEECCC-----CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHH
Q ss_conf 3-421157999704699-----617999877589884034788630475545657727999869075---3007776579
Q gi|254780299|r 236 S-SPMSDAFIMLAQVEG-----RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVST 306 (562)
Q Consensus 236 s-a~~ad~~lVlArt~~-----Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~ 306 (562)
| ++.+|+++|+||++. ++|+|+||++.|| |++.+. +|+|+|+++++++.|++|++ ++||++|+|+
T Consensus 157 t~a~~Ad~~~V~ar~~~~~~~~~~~~flV~~~~pG-----v~~~~~-~~~g~r~~~~~~l~fd~v~vp~~~llg~~g~g~ 230 (380)
T PRK03354 157 TSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPG-----IKVTKL-EKLGLRMDSCCEITFDDVELDEKDMFGREGNGF 230 (380)
T ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCC-----EEEEEC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHH
T ss_conf 67766880357766437899864678876569996-----698444-656877677653213440358300005557189
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999730133357999999999999999999840462224235388889999999999999999999999887201110
Q gi|254780299|r 307 GPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR 386 (562)
Q Consensus 307 ~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~ 386 (562)
+.+...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.||++||||.+++++++++++++++.+|++...
T Consensus 231 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~lAdm~~~~e~ar~l~~~aa~~~d~g~~~ 310 (380)
T PRK03354 231 NRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTIT 310 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99997021789999999877889999998665430332482365312389999999999999999999999998689997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 367776556799999999999999995699885213000455188985001223220462227899999983126
Q gi|254780299|r 387 SEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 387 ~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
..+ ++++|+++++.+.+++++|||+|||+||++|+|++|+|||+++..|||||++||.+.+.|.+.|.
T Consensus 311 ~~~-------aa~aK~~a~e~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rdar~~~i~~Gt~ei~~~~iar~~l~~ 378 (380)
T PRK03354 311 SGD-------AAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378 (380)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHH
T ss_conf 389-------99999999999999999999971607452558999999997341360778999999999999984
No 10
>cd01162 IBD Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=0 Score=477.82 Aligned_cols=345 Identities=19% Similarity=0.240 Sum_probs=299.5
Q ss_pred CCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 69846201799852136566889999999999679620337766664447637999999999830144531221356778
Q gi|254780299|r 80 NTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA 159 (562)
Q Consensus 80 ~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~ 159 (562)
..|....+|+.+ .|++ ++++...+.||.++.+++++++.+. ..+..+...+..+..+++....++++..
T Consensus 20 ~~p~a~~~d~~~------~~p~---e~~~~~~~~Gl~~~~vPee~GG~G~--~~~~~~~v~e~l~~~~~~~~~~~~~~~~ 88 (375)
T cd01162 20 MAPHAADWDQKK------HFPV---DVLRKAAELGFGGIYIRDDVGGSGL--SRLDASIIFEALSTGCVSTAAYISIHNM 88 (375)
T ss_pred CHHHHHHHHHCC------CCCH---HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 835499998649------9999---9999999779988889842389998--9999999999998856664359999999
Q ss_pred HHHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-
Q ss_conf 999985--08788987301200100054426600155212355445888887866543027864896689845146863-
Q gi|254780299|r 160 SMVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS- 236 (562)
Q Consensus 160 a~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s- 236 (562)
+...|. ++++|+++|+|++.+++. ..++++|||++|||+.+++|+|++++|+ |+|||+|+|+|
T Consensus 89 ~~~~l~~~g~~~qk~~~l~~i~~g~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~g~~-~~lnG~K~~it~ 154 (375)
T cd01162 89 CAWMIDSFGNDEQRERFLPDLCTMEK-------------LASYCLTEPGSGSDAAALRTRAVREGDH-YVLNGSKAFISG 154 (375)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCC-------------EEEEEECCCCCCCCCCCCEEEEEEECCE-EEEEEEEEECCC
T ss_conf 99999984999999998799847983-------------0488732788888754543599996998-999325850344
Q ss_pred CCCCCEEEEEEECC----CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEE---EEEECCCCCHHHHH
Q ss_conf 42115799970469----961799987758988403478863047554565772799986907---53007776579999
Q gi|254780299|r 237 SPMSDAFIMLAQVE----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPV 309 (562)
Q Consensus 237 a~~ad~~lVlArt~----~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~---~~llG~~g~G~~~i 309 (562)
++.+|+++|+||++ .|+++|+||++.|| +++.+.++|+|+|+++++++.|+||+ .++||++|+|+..+
T Consensus 155 a~~Ad~~~v~ar~~~~~~~g~~~flV~~~~pG-----v~~~~~~~~~G~~~~~~~~l~fd~v~Vp~~~~lg~~g~g~~~~ 229 (375)
T cd01162 155 AGDSDVYVVMARTGGEGPKGISCFVVEKGTPG-----LSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIA 229 (375)
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEEECCCCCC-----CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCHHHHH
T ss_conf 66665268998527887642589975279988-----6124311345667788405750452235554068766069999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99730133357999999999999999999840462224235388889999999999999999999999887201110367
Q gi|254780299|r 310 EDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE 389 (562)
Q Consensus 310 ~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~ 389 (562)
+..++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|+||.+++++++++++++++.+|++.+...
T Consensus 230 ~~~l~~~rl~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~ladm~~~~~aar~l~~~aa~~~d~~~~~~~- 308 (375)
T cd01162 230 MAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAV- 308 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-
T ss_conf 9877899999898789999999999999988788629850049999999999999999999999999999867997679-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 77655679999999999999999569988521300045518898500122322046222789999998312
Q gi|254780299|r 390 AAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 390 ~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
..++++|+++++.+.+++++|||+|||+||++|+|++|+|||++++.|||||++||.+.+.|.+-+
T Consensus 309 -----~~~~~aK~~~s~~a~~v~~~a~qi~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~ei~r~~iar~il~ 374 (375)
T cd01162 309 -----KLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHC
T ss_conf -----999999999999999999999996473554157589999987178415088799999999999859
No 11
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=0 Score=477.77 Aligned_cols=346 Identities=17% Similarity=0.197 Sum_probs=292.7
Q ss_pred HHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 63436984620179985213656688999999999967962033776666444763799999999983014453122135
Q gi|254780299|r 76 MANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPS 155 (562)
Q Consensus 76 ~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~ 155 (562)
.+++.+|....+++.+.+.+. ++++.|.+ ...+.||.++.+++++++.+. .++.......-++..+..+....+
T Consensus 14 ~~~~i~P~~~~~~~~~~~~~~-~~~~~~~~---~l~e~Gl~gl~vPe~~GG~G~--~~~~~~~v~Eelgr~~~~~~~~~~ 87 (380)
T cd01152 14 LAAHLPPELREESALGYREGR-EDRRRWQR---ALAAAGWAAPGWPKEYGGRGA--SLMEQLIFREEMAAAGAPVPFNQI 87 (380)
T ss_pred HHHHCCCCCCHHHHCCCCCCC-CCHHHHHH---HHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 997688865305635777643-32799999---999679787588824499999--999999999999975897427999
Q ss_pred HHHHHHHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEE
Q ss_conf 6778999985--08788987301200100054426600155212355445888887866543027864896689845146
Q gi|254780299|r 156 VTSASMVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKW 233 (562)
Q Consensus 156 mt~~a~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kw 233 (562)
+.....+.|. ++++|+++|+|++.+++. +.++++|||++|||+.+++|+|++++|+ |+|||+|+
T Consensus 88 ~~~~~~~~l~~~gs~eqk~~~L~~l~~G~~-------------~~a~a~TEp~~GSd~~~~~T~A~~~g~~-~vlnG~K~ 153 (380)
T cd01152 88 GIDLAGPTILAYGTDEQKRRFLPPILSGEE-------------IWCQGFSEPGAGSDLAGLRTRAVRDGDD-WVVNGQKI 153 (380)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCH-------------HEEEEECCCCCCCCCHHCEEEEEEECCE-EEEEEEEE
T ss_conf 999999999987999999999999958982-------------0498847998877502084599996998-99974641
Q ss_pred EEE-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCC
Q ss_conf 863-42115799970469------9617999877589884034788630475545657727999869075---3007776
Q gi|254780299|r 234 FLS-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLN 303 (562)
Q Consensus 234 f~s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g 303 (562)
|+| ++.+|+++|+|||+ +|+|+|+||++.|| |++.+.++++| ++.++++.|+||++ ++||++|
T Consensus 154 ~it~a~~Ad~~~v~art~~~~~~~~gis~flV~~~~pG-----v~~~~~~~~~g--~~~~~~i~fd~v~Vp~~~llG~~g 226 (380)
T cd01152 154 WTSGAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPG-----VTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVN 226 (380)
T ss_pred CCCCHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCC-----CEEECEEECCC--CCCCEEEEECCEEECHHHCCCCCC
T ss_conf 33340004544401202887666686267852279998-----44621032368--877224767773203121478888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999999730133357999999999999999999840462224235388889999999999999999999999887201
Q gi|254780299|r 304 VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA 383 (562)
Q Consensus 304 ~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~ 383 (562)
+|+++++.+++.+|+.++ |.+..+++.+++|+++|.+||+||++||.||++|++|.+++++++++++++++.+|++
T Consensus 227 ~G~~~~~~~l~~~R~~~~----g~a~~~~~~a~~~a~~r~~~G~pl~~~q~vq~~la~m~~~iea~r~l~~~aa~~~d~g 302 (380)
T cd01152 227 DGWKVAMTTLNFERVSIG----GSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAG 302 (380)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 599999999999999999----9998766366899999986378755689999999999999999999999999999778
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHCCHHHHHCCCCHHHHHHHHH
Q ss_conf 1103677765567999999999999999956998852130004551--------88985001223220462227899999
Q gi|254780299|r 384 KSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERS--------IARHYRESPANSILLGSGNAMVLDVL 455 (562)
Q Consensus 384 ~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~--------leRl~RDA~v~~I~EGt~~I~aldv~ 455 (562)
.+... .++++|+++++.+.+++++|||+|||.||++|+| ++|+|||+|+++|||||++||.+.+.
T Consensus 303 ~~~~~-------~~a~aK~~a~e~a~~v~~~a~qi~Gg~G~~~~~~~~~~~~~~~er~~Rdar~~~I~eGt~ei~~~~Ia 375 (380)
T cd01152 303 KPPGA-------EASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIA 375 (380)
T ss_pred CCCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 89836-------89999999999999999999998082522566766331002999999752078551309999999999
Q ss_pred HHHC
Q ss_conf 9831
Q gi|254780299|r 456 NLLE 459 (562)
Q Consensus 456 r~l~ 459 (562)
|.+.
T Consensus 376 r~ll 379 (380)
T cd01152 376 ERLL 379 (380)
T ss_pred HHHC
T ss_conf 8851
No 12
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase (MCAD). MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=0 Score=472.97 Aligned_cols=344 Identities=18% Similarity=0.206 Sum_probs=296.1
Q ss_pred HCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 36984620179985213656688999999999967962033776666444763799999999983014453122135677
Q gi|254780299|r 79 YNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS 158 (562)
Q Consensus 79 ~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~ 158 (562)
+.+|....+|+.| .|+. ++++...+.||.++.+++++++.+.+ .+.......-.+..+.++..++.++.
T Consensus 19 ~i~p~a~~~d~~~------~~p~---~~~~~l~e~Gl~~~~vPee~GG~G~~--~~~~~~v~eela~~~~~~~~~~~~~~ 87 (378)
T cd01157 19 EIIPVAAEYDKSG------EYPW---PLIKRAWELGLMNTHIPEDCGGLGLG--TFDTCLITEELAYGCTGVQTAIEANS 87 (378)
T ss_pred HCHHHHHHHHHCC------CCCH---HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 5826599998639------9999---99999997789878998534999999--99999999999751865331012779
Q ss_pred H-HHHHH-HCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE
Q ss_conf 8-99998-508788987301200100054426600155212355445888887866543027864896689845146863
Q gi|254780299|r 159 A-SMVAL-MTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS 236 (562)
Q Consensus 159 ~-a~~~L-~~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s 236 (562)
. ..+++ .++++|+++|+|++.+++ .++++++|||++|||+.+++|+|++++|+ |+|||+|+|+|
T Consensus 88 l~~~~l~~~g~~~qk~~~L~~l~~G~-------------~~~~~a~tEp~~Gsd~~~~~t~a~~~gd~-~~lnG~K~~vt 153 (378)
T cd01157 88 LGQMPVIISGNDEQKKKYLGRMTEEP-------------LMCAYCVTEPGAGSDVAGIKTKAEKKGDE-YIINGQKMWIT 153 (378)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCC-------------CEEEEEECCCCCCCCCCCCCCEEEEECCE-EEEEEEEECCC
T ss_conf 99999998499999999879984898-------------51798743788777644572279996898-99902774345
Q ss_pred -CCCCCEEEEEEECC--------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCC
Q ss_conf -42115799970469--------9617999877589884034788630475545657727999869075---30077765
Q gi|254780299|r 237 -SPMSDAFIMLAQVE--------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNV 304 (562)
Q Consensus 237 -a~~ad~~lVlArt~--------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~ 304 (562)
++.+|+++|+||++ +++++|+||++.|| |++.+.++++|+|+++++++.|+||++ ++||.+|+
T Consensus 154 ~a~~Ad~~~v~ar~~~~~~~~~~~~~~~flV~~~~pG-----v~~~~~~~~~G~r~~~~~~v~f~dv~vp~~~~lg~~g~ 228 (378)
T cd01157 154 NGGKANWYFLLARSDPDPKCPASKAFTGFIVEADTPG-----IQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGA 228 (378)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCC-----CCCCCCCCCCCCCCCCCCEEEEEEECCCCHHCCCCCCC
T ss_conf 5666762479988468876677760699996367888-----75455002336544674227898641570303678764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79999997301333579999999999999999998404622242353888899999999999999999999998872011
Q gi|254780299|r 305 STGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK 384 (562)
Q Consensus 305 G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~ 384 (562)
|++.++..++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|+||.+++++++.+++++++.+|++.
T Consensus 229 g~~~~~~~l~~~r~~~aa~~~G~a~~~l~~a~~ya~~R~~fG~pi~~~q~vq~~lad~~~~le~ar~l~~~aa~~~d~g~ 308 (378)
T cd01157 229 GFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGR 308 (378)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 58998761068899887877889999999988877767643977442999999999999999999999999999997899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 103677765567999999999999999956998852130004551889850012232204622278999999831
Q gi|254780299|r 385 SRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE 459 (562)
Q Consensus 385 ~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~ 459 (562)
... ..++++|+++++.+.+++++|||+|||+||++|+|++|+|||+++.+|||||++||.+.+.|.+-
T Consensus 309 ~~~-------~~~a~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~ei~r~~iar~ll 376 (378)
T cd01157 309 RNT-------YYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHL 376 (378)
T ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 972-------89999999999999999999999817501066668999998625560606789999999999985
No 13
>cd01151 GCD Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=0 Score=478.05 Aligned_cols=326 Identities=21% Similarity=0.254 Sum_probs=282.3
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHH-H-CCHHHHHHHHHHHCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677-899998-5-0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS-ASMVAL-M-TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~-~a~~~L-~-~~~e~~~~~lp~l~s~ 181 (562)
++++...+.||.++. ++++++. +...+..++...-++..+.++.+.+.+.. .....| . ++++|+++|+|++.++
T Consensus 48 ~~~~~l~e~G~~g~~-peeyGG~--G~~~~~~~~v~eel~~~~~~~~~~~~~~~~l~~~~l~~~gt~~qk~~~Lp~l~~G 124 (386)
T cd01151 48 KIIEEMGELGLLGAT-IKGYGCA--GLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASG 124 (386)
T ss_pred HHHHHHHHCCCCCCC-HHHHCCC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
T ss_conf 999999976998788-3310899--9999999999999987477631099999899999999849999999758531599
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE-ECCCCCEEEEEEECC--CCCEEEEE
Q ss_conf 005442660015521235544588888786654302786489668984514686-342115799970469--96179998
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL-SSPMSDAFIMLAQVE--GRVGCFLV 258 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~-sa~~ad~~lVlArt~--~Gls~FlV 258 (562)
+. +.++++|||++|||+.+++|+|++++|+ |+|||+|+|+ +++.+|+++|+||++ +++++|+|
T Consensus 125 ~~-------------~~a~a~tEp~~Gsd~~~~~t~a~~~g~~-~vlnG~K~~it~a~~Ad~~lv~ar~~~~~~~~~flV 190 (386)
T cd01151 125 EL-------------IGCFGLTEPNHGSDPGGMETRARKDGGG-YKLNGSKTWITNSPIADVFVVWARNDETGKIRGFIL 190 (386)
T ss_pred CE-------------EEEEEECCCCCCCCCCCCEEEEEECCCE-EEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEE
T ss_conf 98-------------9999832898887600082699986985-999878506655544553136643168877538998
Q ss_pred ECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77589884034788630475545657727999869075---300777657999999730133357999999999999999
Q gi|254780299|r 259 PRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335 (562)
Q Consensus 259 p~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A 335 (562)
|++.|| |++.++++|+|+|+++++++.|++|++ +++++ ++|+..++..++.+|+.+++.++|+++++++.+
T Consensus 191 ~~~~~G-----v~~~~~~~~~g~r~~~~~~l~fd~v~Vp~~~~l~~-~~g~~~~~~~l~~~R~~~aa~~~G~a~~ald~a 264 (386)
T cd01151 191 ERGMKG-----LSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTA 264 (386)
T ss_pred ECCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 679887-----51244002345556776221247862509980362-166899999999888663241159999999988
Q ss_pred HHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99984046222423538888999999999999999999999988720111036777655679999999999999999569
Q gi|254780299|r 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEA 415 (562)
Q Consensus 336 ~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~A 415 (562)
++|+++|+|||+||++||.||++||||.++++++++++|++++..|++..... .++++|+++|+.+.+++++|
T Consensus 265 ~~ya~~R~qFG~pI~~~q~vq~~ladm~~~le~ar~~~~~aa~~~d~g~~~~~-------~as~aK~~ase~a~~v~~~a 337 (386)
T cd01151 265 RQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPE-------QISLLKRNNCGKALEIARTA 337 (386)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHHHHH
T ss_conf 87788888559810018999999999999999999999999999967999779-------99999999999999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 988521300045518898500122322046222789999998312
Q gi|254780299|r 416 MECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 416 iqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
||+|||+||++|+|++|+|||++++.|||||++||.+.+.|.+..
T Consensus 338 ~Qi~GG~G~~~e~~~~r~~Rdar~~~i~eGt~ev~r~~iar~l~G 382 (386)
T cd01151 338 REMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHCCCHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 996521533423789999999826352278799999999999758
No 14
>cd01156 IVD Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=0 Score=461.02 Aligned_cols=328 Identities=20% Similarity=0.251 Sum_probs=286.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHHH-H-CCHHHHHHHHHHHCCC
Q ss_conf 99999996796203377666644476379999999998301445312213567-7899998-5-0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT-SASMVAL-M-TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt-~~a~~~L-~-~~~e~~~~~lp~l~s~ 181 (562)
++++...+.||.++.+++++++.+. +++..+...+-.+...++...+..+. ..++..| + ++++++++|+|+++++
T Consensus 37 ~~~~~l~e~Gl~~~~vPee~GG~g~--~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G 114 (376)
T cd01156 37 DLWRKMGKLGLLGITAPEEYGGSGM--GYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISG 114 (376)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 9999999779988889965699998--89999999999986367555122276788999999849999999998998479
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC-----CCEE
Q ss_conf 0054426600155212355445888887866543027864896689845146863-421157999704699-----6179
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-----RVGC 255 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~-----Gls~ 255 (562)
+. ++++++|||++|||+.++.|+|++++|+ |+|||+|+|+| ++.+|+++|+||++. |+++
T Consensus 115 ~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~~~~-~~lnG~K~~v~~~~~Ad~~~v~ar~~~~~~~~gi~~ 180 (376)
T cd01156 115 EH-------------IGALAMSEPNAGSDVVSMKLRAEKKGDR-YVLNGSKMWITNGPDADTLVVYAKTDPSAGAHGITA 180 (376)
T ss_pred CE-------------EEEECCCCCCCCCCHHCCEEEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEE
T ss_conf 85-------------5430468999887512075799981998-999516723221212543578862167667576269
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||+..|| +++.+.++|+|+|+++++++.|+||++ ++||++|+|++.++..++.+|+.+++.++|++++++
T Consensus 181 flV~~~~~G-----v~~~~~~~~~G~r~~~~~~v~fd~v~vp~~~llg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al 255 (376)
T cd01156 181 FIVEKGMPG-----FSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAAL 255 (376)
T ss_pred EEEECCCCC-----CCCCCCCCCCCCCCCCCEEEEECCEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998406898-----620465455567778861687154441667615864406999987135778886665544457776
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|+|||+||++||.+|++|+||.+++++++++++++++.+|.+..... ..+.+|+++++.+.+++
T Consensus 256 ~~a~~ya~~R~qfG~~i~~~q~iq~~lad~~~~~e~ar~~~~~aa~~~d~~~~~~~-------~~a~ak~~~~e~a~~~a 328 (376)
T cd01156 256 DVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPK-------DAAGVILYAAEKATQVA 328 (376)
T ss_pred HHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHH
T ss_conf 77777788898719850106999999999999999999999999999867999889-------99999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 569988521300045518898500122322046222789999998312
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
++|||+|||+||++|+|++|+|||+++.+|+|||++||.+.+.|.+-|
T Consensus 329 ~~a~q~~Gg~G~~~e~~~~r~~Rdar~~~i~~Gt~ei~r~~ia~~ll~ 376 (376)
T cd01156 329 LDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999996274312267489999987106723066899999999999609
No 15
>cd01160 LCAD Long chain acyl-CoA dehydrogenase (LCAD) is acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD is a homodimer.
Probab=100.00 E-value=0 Score=464.94 Aligned_cols=342 Identities=23% Similarity=0.286 Sum_probs=289.5
Q ss_pred CCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 69846201799852136566889999999999679620337766664447637999999999830144531221356778
Q gi|254780299|r 80 NTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA 159 (562)
Q Consensus 80 ~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~ 159 (562)
..|....+|+.|. |++ ++++...+.||.++.++.++++.+. ..+......+-.+.......+....+..
T Consensus 18 ~~p~~~~~d~~~~------~p~---~~~~~l~~~G~~~~~vPe~~GG~G~--~~~~~~~v~eel~~~~~~~~~~~~~~~~ 86 (372)
T cd01160 18 VAPFHHEWEKAGE------VPR---EVWRKAGEQGLLGVGFPEEYGGIGG--DLLSAAVLWEELARAGGSGPGLSLHTDI 86 (372)
T ss_pred CCHHHHHHHHCCC------CCH---HHHHHHHHCCCCCCCCCHHHCCCCC--CHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8245999987499------999---9999999779988899954589997--8999999999998867631299999999
Q ss_pred HHHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-
Q ss_conf 999985--08788987301200100054426600155212355445888887866543027864896689845146863-
Q gi|254780299|r 160 SMVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS- 236 (562)
Q Consensus 160 a~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s- 236 (562)
..+.|. ++++++++|+|++.+++. ++++++|||++|||+.+++|+|++++|+ |+|||+|+|+|
T Consensus 87 ~~~~l~~~g~~~qk~~~l~~~~~G~~-------------~~~~a~tEp~~Gsd~~~~~t~a~~~g~~-~~lnG~K~~vs~ 152 (372)
T cd01160 87 VSPYITRAGSPEQKERVLPQMVAGKK-------------IGAIAMTEPGAGSDLQGIRTTARKDGDH-YVLNGSKTFITN 152 (372)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCE-------------EEEEEECCCCCCCCCCCCCEEEEEECCE-EEEEEEEECCCC
T ss_conf 99999984999999999899967996-------------9999843898888756564189996998-999326704544
Q ss_pred CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHH
Q ss_conf 42115799970469------9617999877589884034788630475545657727999869075---30077765799
Q gi|254780299|r 237 SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTG 307 (562)
Q Consensus 237 a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~ 307 (562)
++.+|+++|+||++ +|+++|+||++.|| |++.+.++++|+++++++++.|+||++ ++||++|+|++
T Consensus 153 a~~Ad~~~v~a~~~~~~~~~~g~~~~lV~~~~~G-----v~~~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~ 227 (372)
T cd01160 153 GMLADVVIVVARTGGEARGAGGISLFLVERGTPG-----FSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFY 227 (372)
T ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 3456640366652047777784488975168998-----70146545457534665500367668562003687462799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99997301333579999999999999999998404622242353888899999999999999999999998872011103
Q gi|254780299|r 308 PVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRS 387 (562)
Q Consensus 308 ~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~ 387 (562)
.++..++.+|+.+++.++|+++++++.+++|+++|+|||+||.+||.||++|++|.+++++++++++++++..|.+....
T Consensus 228 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y~~~R~~fG~~i~~~q~i~~~la~~~~~~~~ar~l~~~aa~~~d~g~~~~ 307 (372)
T cd01160 228 YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDV 307 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99985688899887652026899999999999877632992542899999999999999999999999999997799977
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 67776556799999999999999995699885213000455188985001223220462227899999983
Q gi|254780299|r 388 EEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 388 ~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
. .++++|+++++.+.+++++|||+|||+||+.|+|++|+|||+++.+|||||++||.+.+.|.+
T Consensus 308 ~-------~a~~aK~~~~e~a~~~~~~a~q~~Gg~G~~~e~~~~r~~Rda~~~~i~~Gt~ev~~~~ia~~l 371 (372)
T cd01160 308 A-------EASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9-------999999999999999999999962852212564899999861777551768999999999973
No 16
>KOG0140 consensus
Probab=100.00 E-value=0 Score=465.32 Aligned_cols=340 Identities=19% Similarity=0.249 Sum_probs=295.6
Q ss_pred HHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 43698462017998521365668899999999996796203377666644476379999999998301445312213567
Q gi|254780299|r 78 NYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT 157 (562)
Q Consensus 78 ~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt 157 (562)
+.--|....||..| +|+ .++++.+.+.|+.+.-.+..+++.+ ...+....-++ +....|.-++|
T Consensus 45 ~e~~P~aae~Dk~g------e~P---~~iirkA~~lG~~~~~ip~~~GG~G--ls~l~t~lI~E-----~LayGCtg~~~ 108 (408)
T KOG0140 45 DEMIPNAAEYDKSG------EFP---WEIIRKAHELGFMNTYIPEDYGGLG--LSRLDTCLIFE-----ALAYGCTGIQT 108 (408)
T ss_pred HHHCCCHHHHCCCC------CCC---HHHHHHHHHCCCCCCCCCCCCCCCC--CHHHHHHHHHH-----HHHCCCHHHHH
T ss_conf 76253054314367------776---8999999872667654750138877--01477899999-----99736466778
Q ss_pred HHHHH------H-HHCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECC
Q ss_conf 78999------9-8508788987301200100054426600155212355445888887866543027864896689845
Q gi|254780299|r 158 SASMV------A-LMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSG 230 (562)
Q Consensus 158 ~~a~~------~-L~~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG 230 (562)
...+. + +.+++||+++|+|+|+... ...+.++|||++||||++++|+|++.|| +|+|||
T Consensus 109 ~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p-------------~~asYcvTEPgAGSDvagikTka~KkGD-eYiiNG 174 (408)
T KOG0140 109 AISIHNLAAWPIILSGNEEQKKKYLGRLAEEP-------------KVASYCVTEPGAGSDVAGIKTKAEKKGD-EYIING 174 (408)
T ss_pred HHHCCCHHHHHEHHCCCHHHHHHHHHHHHCCH-------------HHHHHHCCCCCCCCCHHHHHHHHHHCCC-EEEECC
T ss_conf 87334334422211286888876535554031-------------4544100588987641443124453487-799747
Q ss_pred EE-EEEECCCCCEEEEEEECCC--------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EE
Q ss_conf 14-6863421157999704699--------617999877589884034788630475545657727999869075---30
Q gi|254780299|r 231 HK-WFLSSPMSDAFIMLAQVEG--------RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FL 298 (562)
Q Consensus 231 ~K-wf~sa~~ad~~lVlArt~~--------Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~l 298 (562)
+| |+++++.+++++|+||+++ ++++|+|+.++|| ++.++-+++||.|+++|--+.|+||++ |.
T Consensus 175 sKawItg~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpG-----lt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nv 249 (408)
T KOG0140 175 SKAWITGAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPG-----LTRGKKEKNMGQRCSDTRGITFEDVRVPKENV 249 (408)
T ss_pred CEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCC-----CCCCHHHHCCCCCCCCCCEEEEEECCCCHHCC
T ss_conf 3356506874536999984489999998763589998089977-----67671331246557887503664135530011
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 07776579999997301333579999999999999999998404622242353888899999999999999999999998
Q gi|254780299|r 299 LGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLAN 378 (562)
Q Consensus 299 lG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~ 378 (562)
||.+|.||++++..++.+|..++++++|++.||++++.+|+.+|++||+||++||.+|.+||||++.+|.+|++++++|+
T Consensus 250 lg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~ 329 (408)
T KOG0140 250 LGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAW 329 (408)
T ss_pred CCCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26898640100212258887514454678899999999999989874867021045787799998789999999998899
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 87201110367776556799999999999999995699885213000455188985001223220462227899999983
Q gi|254780299|r 379 SFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 379 ~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
.+|++.+.. ...+|+|.++++.+..++..|+|+|||+||..|||+++++||++|.+|||||++||.+.+.|.|
T Consensus 330 evd~~r~~s-------y~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~l 402 (408)
T KOG0140 330 EVDNGRRNS-------YYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSL 402 (408)
T ss_pred HHHCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 862688612-------7899999875205889987778754467756446699997441466766443899999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780299|r 459 E 459 (562)
Q Consensus 459 ~ 459 (562)
-
T Consensus 403 l 403 (408)
T KOG0140 403 L 403 (408)
T ss_pred H
T ss_conf 9
No 17
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=459.38 Aligned_cols=327 Identities=19% Similarity=0.210 Sum_probs=277.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-HCCHHHHHHHHHHHCC-CC
Q ss_conf 999999967962033776666444763799999999983014453122135677899998-5087889873012001-00
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL-MTTPRVHKDWAPKIFS-RE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L-~~~~e~~~~~lp~l~s-~~ 182 (562)
++++...+.||.++.+++++|+.+ ..++......+-.+.......+ +++...+..++ .++++++++|++.++. ++
T Consensus 41 ~~~~~l~e~Gl~~l~vPee~GG~G--~~~~~~~~v~eelg~~~~~~~~-~~~~~~~~~i~~~gs~eq~~~~l~~~l~~G~ 117 (383)
T PRK12341 41 EFMRALADNGISMLGVPEEFGGIP--ADYVTQMLALMEVSKCGAPAFL-ITNGQCIHSMRRFGSAEQLRKTAESTLETGD 117 (383)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCC--CCHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 999999977888879985458999--8899999999999873677654-3179999999997899999998568872787
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC------CCEE
Q ss_conf 054426600155212355445888887866543027864896689845146863-421157999704699------6179
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG------RVGC 255 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~------Gls~ 255 (562)
..+++++|||++|||+.+++|+|++++| .|+|||+|+|+| ++.+|+++|+||+++ |+|+
T Consensus 118 -------------~~~~~a~tEp~~Gsd~~~~~tta~~~~~-~~~lnG~K~~it~a~~Ad~~~v~ar~~~~~~~~~gis~ 183 (383)
T PRK12341 118 -------------PAYALALTEPGAGSDNNSATTTYTRKNG-KVYINGQKTFITGAKEYPYMLVLARDPQPKDPKKAFTL 183 (383)
T ss_pred -------------EEEEEEECCCCCCCCHHHCEEEEEEECC-EEEEECEECCCCCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf -------------5799982488877871226257886399-99995635474555568789999535888887654899
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||++.|| |++.+ .+++|.|+++++++.|+||++ ++||++|+|+..++..++.+|+.+++.++|++++++
T Consensus 184 flV~~~~pG-----v~v~~-~~~~g~~~~~~~~v~f~dv~Vp~~~~lg~~g~g~~~~~~~l~~~rl~~aa~~~G~a~~al 257 (383)
T PRK12341 184 WWVDSSKPG-----IKINP-LHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSTGFAECAF 257 (383)
T ss_pred EEEECCCCC-----EEEEC-CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998569996-----48704-645688765202342354223611146766728999999776889999998850557667
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|+|||+||++||.||++|+||.+++++++++++++++..|++.+.. ..++++|+++++.+.+++
T Consensus 258 ~~a~~ya~~R~qfG~pi~~~Q~vq~~lad~~~~~e~ar~l~~~aa~~~d~~~~~~-------~~aa~aK~~a~e~a~~v~ 330 (383)
T PRK12341 258 EDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIENMRNMVLKVAWQADNGQSLR-------TSAALAKLYCARTAMEVI 330 (383)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHHHH
T ss_conf 7653457888861985003899999999999999999999999999986899953-------799999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 5699885213000455188985001223220462227899999983126
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
++|||+|||+||++|+|++|+|||+++++|||||++||.+.+.|.+-|+
T Consensus 331 ~~a~qi~Gg~G~~~e~~~~r~~Rdar~~~I~~Gt~ei~~~~ia~~vl~~ 379 (383)
T PRK12341 331 DDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKD 379 (383)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999963850104554999999984161751778999999999999998
No 18
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=0 Score=454.92 Aligned_cols=347 Identities=15% Similarity=0.131 Sum_probs=270.1
Q ss_pred HHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 43698462017998521365668899999999996796203377666644476379999999998301445312213567
Q gi|254780299|r 78 NYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVT 157 (562)
Q Consensus 78 ~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt 157 (562)
++.+|..+.++..|+.. .++...+.++...+.||.++.|++++++.+. ..+...+..+-++..........+++
T Consensus 21 ~~v~p~~~~~~~~~~~~----~~~~~~~~~~~l~~~G~~~~~~PeeyGG~G~--~~~~~~iv~EEl~~~~~~~~~~~~~~ 94 (395)
T TIGR03204 21 DNVPADTRQKLVEGRHL----TKDEMVTWWRILNKKGWGVSHWPKQYGGTGW--TSVQHYIFNEELQSAPAPQPLAFGVS 94 (395)
T ss_pred HHCCHHHHHHHHCCCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 74981144687436788----8588999999999668998999824399998--89999999999735597188999999
Q ss_pred HHHHHHH-H-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE
Q ss_conf 7899998-5-0878898730120010005442660015521235544588888786654302786489668984514686
Q gi|254780299|r 158 SASMVAL-M-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL 235 (562)
Q Consensus 158 ~~a~~~L-~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~ 235 (562)
. +.++| . +++|||++|||++++++. ++++++|||++|||+++++|+|+++|| +|+|||+|+||
T Consensus 95 ~-~~~~i~~~GteeqK~~~Lp~l~~G~~-------------~~~~a~tEP~aGSD~~~~~T~A~~~gd-~~vinG~K~~i 159 (395)
T TIGR03204 95 M-VGPVIYTFGNEEQKKRFLPRIANVDD-------------WWCQGFSEPGSGSDLASLKTKAEKKGD-KWIINGQKTWT 159 (395)
T ss_pred H-HHHHHHHHCCHHHHHHHHHHHHCCCH-------------HHEEEECCCCCCCCCCCCCEEEEECCC-EEEEEEEECCC
T ss_conf 9-99999986989999998899848767-------------766652589888870025657873499-89999674372
Q ss_pred E-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCH
Q ss_conf 3-42115799970469------9617999877589884034788630475545657727999869075---300777657
Q gi|254780299|r 236 S-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVS 305 (562)
Q Consensus 236 s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G 305 (562)
| ++.||+++|+|||+ +|+|+|+||++.|| +++.+++.++| +++++++.|+||++ ++||++|+|
T Consensus 160 t~a~~Ad~~~v~art~~~~~~~~Gis~flV~~~~~G-----~~v~~~~~~~g--~~~~~~v~f~dv~VP~~~llG~~g~G 232 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKG-----ITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKG 232 (395)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC-----EEECCCCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCCH
T ss_conf 678635520133301687777787123202478997-----37454303577--66645202576201533036877847
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999973013335799999999999999999984046222423538888999999999999999999999988720111
Q gi|254780299|r 306 TGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS 385 (562)
Q Consensus 306 ~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~ 385 (562)
|++++..++.+|+.++ ++|+++++++.+++|+++|+|||+||++||.||++||+|.+++++++.+.++++........
T Consensus 233 ~~~~~~~l~~~R~~~a--~~G~a~~al~~a~~ya~~R~~fG~pi~~~q~i~~~lA~m~~~~~a~~l~~~~~~~~~~~~~~ 310 (395)
T TIGR03204 233 WDYAKFLLGNERTGIA--RVGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGK 310 (395)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998999999999--99999999999999999998579651209999999999999999999999999999887469
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCCCCCC----HHHHHHHCCHHHHHCCCCHHHHH
Q ss_conf 036777655679999999999999999569988521----------3000455----18898500122322046222789
Q gi|254780299|r 386 RSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG----------SGYIEER----SIARHYRESPANSILLGSGNAMV 451 (562)
Q Consensus 386 ~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG----------~Gy~ee~----~leRl~RDA~v~~I~EGt~~I~a 451 (562)
.. .....+++|+++++.+..+++.+||++|+ .||.+.. +++|.|||+++.+||||||+||.
T Consensus 311 ~~-----~~~~~s~~K~~ase~~~~~~~~a~qi~G~~~~~~~ihG~~g~~~~~~~~~~i~r~yrd~r~~~I~eGTsEIqr 385 (395)
T TIGR03204 311 GK-----PNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQR 385 (395)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99-----8699999999999999999999999854210023113667623556657899999986467736543999999
Q ss_pred HHHHHHHC
Q ss_conf 99999831
Q gi|254780299|r 452 LDVLNLLE 459 (562)
Q Consensus 452 ldv~r~l~ 459 (562)
+.+.|.+.
T Consensus 386 ~iIAr~lL 393 (395)
T TIGR03204 386 NIIAKAVL 393 (395)
T ss_pred HHHHHHHC
T ss_conf 99999861
No 19
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=0 Score=450.64 Aligned_cols=324 Identities=16% Similarity=0.160 Sum_probs=272.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHH--CCHHHHHHHHHHHCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778-999985--0878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA-SMVALM--TTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~-a~~~L~--~~~e~~~~~lp~l~s~ 181 (562)
++++...+.||.++.+++++++.+.+ .+...+...-.+- .....|...|.. +...|. ++++|+++|+|+++++
T Consensus 41 ~lw~~lae~G~~gl~ipEe~GG~G~~--~~~~~~v~Eelgr--~~~~~p~~~~~~~~~~~l~~~g~~~qk~~~Lp~l~~G 116 (378)
T TIGR03203 41 AVWGKLAEQGLLGLPFSEADGGFGAG--SVETMIVMEALGK--ALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDG 116 (378)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999997799876898655999947--9999999999987--5652788889999999999839999999766998389
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCE
Q ss_conf 0054426600155212355445888887866543027864896689845146863-42115799970469------9617
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVG 254 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls 254 (562)
+. +.++++|||++|||+.+++|+|++++|+ |+|||+|+|++ +..+|+++|+||++ +|+|
T Consensus 117 ~~-------------~~a~a~tEp~~gsd~~~~~t~a~~~gd~-~vlnG~K~~i~~~~~Ad~~lv~a~t~~~~~~~~gi~ 182 (378)
T TIGR03203 117 SK-------------TFAFAQLEKNSRYDLGDVSTTAKKTGDG-WVIDGEKFVVLNGETADTLIVTARTKGARRDRTGIG 182 (378)
T ss_pred CE-------------EEEEEECCCCCCCCHHHCEEEEEECCCE-EEECCCCCEEECCCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 93-------------4798724888887612174599981882-797287301432666768999997788667778427
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999877589884034788630475545657727999869075---30077765799999973013335799999999999
Q gi|254780299|r 255 CFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVS 331 (562)
Q Consensus 255 ~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~a 331 (562)
+|+||++.|| +++.+...+.|.+ ++++.|++|++ ++||++++|++.+...++.+|+.+++.++|+++++
T Consensus 183 ~flV~~~~~G-----v~~~~~~~~~g~~---~~~v~f~~v~V~~~~~lg~~~~g~~~~~~~l~~~r~~~aa~a~G~a~~a 254 (378)
T TIGR03203 183 VFLVPAGAKG-----VTIKGYPTQDGLH---AADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDES 254 (378)
T ss_pred EEEEECCCCC-----EEECCCCCCCCCC---CCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986068996-----1455603656765---4444577830236650276324899999999998999999997799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998404622242353888899999999999999999999998872011103677765567999999999999999
Q gi|254780299|r 332 LAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAV 411 (562)
Q Consensus 332 l~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v 411 (562)
++.+++|+++|+|||+||++||.||++||||.+++|++|+++|.+++..|........ ..++++|+++++.+.++
T Consensus 255 l~~av~Ya~~R~qFGrpIg~fQaIqh~lAdm~~~~e~ar~l~~~aa~a~~~~~~~~~~-----~~~a~AK~~a~eaa~~v 329 (378)
T TIGR03203 255 LKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERA-----NAIAAAKVQIGKSLKFV 329 (378)
T ss_pred HHHHHHHHHHCEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf 9999999861806880557524899999999999999999999999998714981249-----99999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 956998852130004551889850012232204622278999999831
Q gi|254780299|r 412 IAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLE 459 (562)
Q Consensus 412 ~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~ 459 (562)
+++|+|+|||+||++|||++|+|||++++.|++||++++..-+.++++
T Consensus 330 a~~aiQihGG~G~t~E~~~~~~~Rra~~~~~~~G~~~~h~~ria~a~g 377 (378)
T TIGR03203 330 GQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAAGG 377 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 999999865896960388999999999999861989999999998768
No 20
>KOG0141 consensus
Probab=100.00 E-value=0 Score=466.80 Aligned_cols=330 Identities=21% Similarity=0.306 Sum_probs=289.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHH--HCCHHHHHHHHHHHCC
Q ss_conf 9999999967962033776666444763799999999983014453122135677-899998--5087889873012001
Q gi|254780299|r 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS-ASMVAL--MTTPRVHKDWAPKIFS 180 (562)
Q Consensus 104 ~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~-~a~~~L--~~~~e~~~~~lp~l~s 180 (562)
++.++..-+.|++++.-+.++++.+ +..+.+++..+-.+-++.++.-...... -++--| .+++||+++|+|+|+|
T Consensus 77 r~~WkklG~~gllGita~~~~GG~G--~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~s 154 (421)
T KOG0141 77 REFWKKLGKQGLLGITAPEEYGGSG--GGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLIS 154 (421)
T ss_pred HHHHHHHHHCCCCCCCCHHHHCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9999996445745214616628875--30788999999987652785655321121589998826989998754045505
Q ss_pred CCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEE-EEEECCCCCEEEEEEECC-------CC
Q ss_conf 0005442660015521235544588888786654302786489668984514-686342115799970469-------96
Q gi|254780299|r 181 REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE-------GR 252 (562)
Q Consensus 181 ~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~K-wf~sa~~ad~~lVlArt~-------~G 252 (562)
+++ +++.+||||++||||.+++++|+++||+ |+|||.| |++++|++|+.+|.|+|+ .|
T Consensus 155 Ge~-------------iGalAMsEp~AGSDvv~mK~~Aek~g~~-yiLNGsK~witNG~~advliVyAkTd~~a~~~~hG 220 (421)
T KOG0141 155 GEH-------------IGALAMSEPGAGSDVVSMKLKAEKKGDD-YILNGSKFWITNGPDADVLIVYAKTDHSAVPPSHG 220 (421)
T ss_pred CCC-------------CCEEEECCCCCCCCCCEEEEECEECCCC-EEECCCEEEEECCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 450-------------0203324899987401124100105883-78617479871698775799998238888997676
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1799987758988403478863047554565772799986907---5300777657999999730133357999999999
Q gi|254780299|r 253 VGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMR 329 (562)
Q Consensus 253 ls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar 329 (562)
||+|+|++..|| ++..+--||||+|++.|||+.|+|++ .+++|++|+|+.++|..+..+|+.++.+.+|+|+
T Consensus 221 It~FiVEkgm~G-----Fs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmq 295 (421)
T KOG0141 221 ITAFIVEKGMPG-----FSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQ 295 (421)
T ss_pred EEEEEECCCCCC-----CCCCHHHHHHCCCCCCCHHEEHHHCCCCHHHHCCCCCCEEEEEECCCCHHHHHHCCCCHHHHH
T ss_conf 179997178865-----320124576347777603200643368578742867864899943787667433268569999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999984046222423538888999999999999999999999988720111036777655679999999999999
Q gi|254780299|r 330 VSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAP 409 (562)
Q Consensus 330 ~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~ 409 (562)
.+++++..|+++|++||++|.+||++|.+||||++.+-++|+.+|.+++..|.+.-++.+ .+.+|+|++|.+.
T Consensus 296 a~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kd-------cag~il~aaE~~t 368 (421)
T KOG0141 296 AALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKD-------CAGVILYAAEKAT 368 (421)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHHHH
T ss_conf 999875668999998587105789887689999999999999999999986638998455-------1010005865657
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9995699885213000455188985001223220462227899999983126
Q gi|254780299|r 410 AVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 410 ~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
.|+.+|+|||||+||+.|||+.|+||||++..|+-||++|..+-+.|.+.++
T Consensus 369 qVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141 369 QVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 9998888532676300346114665314334525874999999998776025
No 21
>cd01158 SCAD/SBCAD Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=0 Score=440.69 Aligned_cols=345 Identities=23% Similarity=0.297 Sum_probs=292.7
Q ss_pred HCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 36984620179985213656688999999999967962033776666444763799999999983014453122135677
Q gi|254780299|r 79 YNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS 158 (562)
Q Consensus 79 ~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~ 158 (562)
+..|+...+|+.| .|++ ++++...+.||.++.+++++++.+.+ ++..+....-.+..+......+++..
T Consensus 17 ~~~p~a~~~d~~~------~~p~---~~~~~l~~~G~~~l~~P~~~GG~g~~--~~~~~~~~e~l~~~~~~~~~~~~~~~ 85 (373)
T cd01158 17 EIAPLAAEMDEKG------EFPR---EVIKEMAELGLMGIPIPEEYGGAGLD--FLAYAIAIEELAKVDASVAVIVSVHN 85 (373)
T ss_pred HCHHHHHHHHHCC------CCCH---HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCEEEHHHH
T ss_conf 6847899998659------9999---99999998799877999323999999--99999999999865766664304878
Q ss_pred --HHHHHHH-CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEE
Q ss_conf --8999985-0878898730120010005442660015521235544588888786654302786489668984514686
Q gi|254780299|r 159 --ASMVALM-TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFL 235 (562)
Q Consensus 159 --~a~~~L~-~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~ 235 (562)
.+..++. ++++++++|+|++.+++. +.++++|||.+|||+..++|+|++++|| |+|||+|+|+
T Consensus 86 ~~~~~~l~~~g~~~~~~~~l~~~~~G~~-------------~~~~a~sEp~~Gsd~~~~~t~a~~~~~g-~~lnG~K~~v 151 (373)
T cd01158 86 SLGANPIIKFGTEEQKKKYLPPLATGEK-------------IGAFALSEPGAGSDAAALKTTAKKDGDD-YVLNGSKMWI 151 (373)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCE-------------EEEEEECCCCCCCCCCCCCEEEEEECCE-EEEEEEEECC
T ss_conf 9999999983999999998899957994-------------7998733898888744452399997999-9998577065
Q ss_pred E-CCCCCEEEEEEECCC-----CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHH
Q ss_conf 3-421157999704699-----617999877589884034788630475545657727999869075---3007776579
Q gi|254780299|r 236 S-SPMSDAFIMLAQVEG-----RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVST 306 (562)
Q Consensus 236 s-a~~ad~~lVlArt~~-----Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~ 306 (562)
| ++.+|+++|+|++++ |+++|+||++.|| +++.+.++++|+++++++++.|+||++ ++||++|+|+
T Consensus 152 s~a~~Ad~~lv~a~~~~~~~~~g~~~~lv~~~~~G-----v~i~~~~~~~G~~~~~~~~~~f~~v~Vp~~~~lg~~g~g~ 226 (373)
T cd01158 152 TNGGEADFYIVFAVTDPSKGYRGITAFIVERDTPG-----LSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGF 226 (373)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCC-----CEECCCCCCCCCCCCCCCCEECCCEEECHHHCCCCCCCHH
T ss_conf 45556774147665168777672589962267888-----6305765444676666650005652776353378878279
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999730133357999999999999999999840462224235388889999999999999999999999887201110
Q gi|254780299|r 307 GPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSR 386 (562)
Q Consensus 307 ~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~ 386 (562)
..++..++.+|+.+++.++|+++++++.+++|+++|+|||+||.+||.+|++|++|.+++++++++++++++..|.+.+.
T Consensus 227 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~pi~~~q~v~~~la~~~~~l~~ar~l~~~aa~~~d~~~~~ 306 (373)
T cd01158 227 KIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPF 306 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99987537789998898764658878999999886775299720589999999999999999999999999999779994
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 36777655679999999999999999569988521300045518898500122322046222789999998312
Q gi|254780299|r 387 SEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 387 ~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
..+ ++++|+++++.+.+++++|||++||.||++|+|++|+|||+++.+|+|||++||.+.+.|.+.|
T Consensus 307 ~~~-------aa~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~ev~r~~i~~~~l~ 373 (373)
T cd01158 307 IKE-------AAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHC
T ss_conf 699-------9999999999999999999998084543267789999986056636177799999999999729
No 22
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=0 Score=431.11 Aligned_cols=331 Identities=25% Similarity=0.334 Sum_probs=288.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----HH--HCCHHHHHHHHHH
Q ss_conf 99999999679620337766664447637999999999830144531221356778999----98--5087889873012
Q gi|254780299|r 104 HALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMV----AL--MTTPRVHKDWAPK 177 (562)
Q Consensus 104 ~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~----~L--~~~~e~~~~~lp~ 177 (562)
.++++...+.|+.++.|+.++++. +.......+..+.++..+.+..+.+.++..... .+ .++++++++|+|+
T Consensus 42 ~~~~~~l~~~G~~~~~~p~e~GG~--~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~ 119 (393)
T COG1960 42 RELLRALAEAGLLGLTIPEEYGGL--GLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPR 119 (393)
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999997698667899666898--865456999999999866023367888888888766554206889999875266
Q ss_pred HCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCC-EEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC----
Q ss_conf 00100054426600155212355445888887866543-0278648966898451468634-21157999704699----
Q gi|254780299|r 178 IFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAIT-SQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG---- 251 (562)
Q Consensus 178 l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~-T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~---- 251 (562)
+.+++ ++.++++|||++|||+.++. |++++.+++ |+|||+|||||+ +.+|+++|+||+++
T Consensus 120 ~~~G~-------------~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~-~~lnG~K~~is~~~~ad~~~v~Ar~~~~~~~ 185 (393)
T COG1960 120 LASGE-------------LIGAFALTEPGAGSDLASLRTTAAVRDDGD-YVLNGQKIWISNAPVADWLLVLARTDPAPGK 185 (393)
T ss_pred HHCCC-------------HHHEEEECCCCCCCCCCCCCCEEEEECCCC-EEEEEEEEEECCCCCCCEEEEEEECCCCCCC
T ss_conf 52444-------------142235157877775323562499975996-8997378876688777779999865876666
Q ss_pred --CCEEEEEECC-CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --6179998775-89884034788630475545657727999869075---30077765799999973013335799999
Q gi|254780299|r 252 --RVGCFLVPRL-LEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSV 325 (562)
Q Consensus 252 --Gls~FlVp~~-~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~ 325 (562)
|+|+|+||++ .|| +++.+++++.|+++++|+++.|+||++ ++||++|+|+..++..++.+|+.+++.++
T Consensus 186 ~~gis~flV~~~~~~G-----v~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~ 260 (393)
T COG1960 186 HKGISLFLVPKDLTPG-----VSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQAL 260 (393)
T ss_pred CCCEEEEEEECCCCCC-----EEEECCCCCCCCCCCCCEEEEECCEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6752699987688997-----28625545567677861589976623428860677786299999989888999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998404622242353888899999999999999999999998872011103677765567999999999
Q gi|254780299|r 326 SGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCC 405 (562)
Q Consensus 326 G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~ 405 (562)
|++++|++.+++|+++|++||++|++||.+|++|++|.+++++++++++++++..|.+... ...++++|++++
T Consensus 261 G~a~~al~~a~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~d~~~~~-------~~~~~~aK~~~~ 333 (393)
T COG1960 261 GIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDA-------GAEAAMAKLFAT 333 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHH
T ss_conf 9999999999999998564188632278999999999999999999999998876445524-------789999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCH
Q ss_conf 999999956998852130004551889850012232204622278999999831260
Q gi|254780299|r 406 KMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGT 462 (562)
Q Consensus 406 e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~~ 462 (562)
+.+..+++++||+|||+||+.|+|++|+|||+++++|||||++||.+++.+.+.+.+
T Consensus 334 ~~~~~v~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~l~~~~ 390 (393)
T COG1960 334 EAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999999999539421057864999998734553146769999999999972554
No 23
>cd00567 ACAD Acyl-CoA dehydrogenase (ACAD). Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD
Probab=100.00 E-value=0 Score=401.52 Aligned_cols=324 Identities=27% Similarity=0.317 Sum_probs=283.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
++++...+.||..+..+..+++.+... . ..+........+....+++.++......|. ++++++++|++++.+++
T Consensus 34 ~~~~~l~~~Gl~~~~~p~~~GG~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~ 110 (369)
T cd00567 34 ELLAELGLLGLLGPTVPGGYGGGGLDL--L-ELAIEEELARADAAAALLLLGTLLGAALLLAYGTEEQKERYLPPLASGE 110 (369)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCH--H-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 999999984899679861249998469--9-9999999977674069999999999999998399999999989984899
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC------CCEE
Q ss_conf 0544266001552123554458888878665430278648966898451468634-21157999704699------6179
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG------RVGC 255 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~------Gls~ 255 (562)
+++++++|||.+|||+...+|+|++++|| |+|||+|+|+|+ +.+|+++|+|++++ |+++
T Consensus 111 -------------~~~~~a~sE~~~g~~~~~~~t~a~~~~gg-~~l~G~k~~~s~~~~ad~~~v~a~~~~~~~~~~~~~~ 176 (369)
T cd00567 111 -------------AIAAFALTEPGAGSDLAGIRTTARKDGDG-YVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISA 176 (369)
T ss_pred -------------EEEEEEECCCCCCCCCCCEEEEEEEECCE-EEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf -------------38999725898788855414699997998-9999999986220026751688751687678885689
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||+..|| +++.+.++++|+|+++++.+.|+++++ ++||.++.+++.+...++..|+.+++.++|++++++
T Consensus 177 ~lv~~~~~g-----v~~~~~~~~~G~r~t~s~~v~~~~v~Vp~~~~l~~~~~~~~~~~~~~~~~~~~~aa~~lG~a~~al 251 (369)
T cd00567 177 FLVPADTPG-----VTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAAL 251 (369)
T ss_pred EEEECCCCC-----EEEEECCCCCCCCCCCCCCCEECCEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999516896-----688631355677654444211056787636503641037999998557779999999987778769
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+... .+..++++|+++++.+.+++
T Consensus 252 ~~~~~~~~~R~~~g~~l~~~~~v~~~la~~~~~~~~a~~~~~~aa~~~d~~~~~------~~~~~~~aK~~a~~~a~~~~ 325 (369)
T cd00567 252 DEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDE------ARLEAAMAKLFATEAAREVA 325 (369)
T ss_pred HHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHH
T ss_conf 999999873523797044099999999999999999999999999999779986------47999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 56998852130004551889850012232204622278999999
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLN 456 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r 456 (562)
++++|++||.||++|+|++|+|||+++.+|||||++|+.+.++|
T Consensus 326 ~~~~~~~Gg~g~~~~~~l~r~~Rdar~~~~~~G~~~~~~~~~~~ 369 (369)
T cd00567 326 DLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 369 (369)
T ss_pred HHHHHHHCHHHHCCCCHHHHHHHHHHCCEECCCHHHHHHHHHCC
T ss_conf 99999728787666868999999863151516889999998677
No 24
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C (DszC). DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=0 Score=387.88 Aligned_cols=330 Identities=18% Similarity=0.170 Sum_probs=274.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985--08788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
+.++.+.+.||.++..++++++.+.+ .+.......-.+..+.++...+.++.+.+..|. ++++++++|+|++.+++
T Consensus 26 e~~~~l~e~Gl~gl~vP~~~GG~g~~--~~~~~~v~eela~~~~s~a~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 26 EEVALLRQSGLGTLRVPKEYGGLGAS--LPDLYEVVRELAAADSNIAQALRAHFGFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 99999997799887989323999999--9999999999987685589999874248999998097999998668873798
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCCC-CEEEEEEC
Q ss_conf 0544266001552123554458888878665430278648966898451468634-211579997046996-17999877
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEGR-VGCFLVPR 260 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~G-ls~FlVp~ 260 (562)
+.+.++|||. |||.....|++++++|+ |+|||+|+|+|+ +.+|+++|.|++++| .++|+||+
T Consensus 104 --------------~~~~a~te~g-~~~~~~~~t~a~~~~gg-~~lnG~K~fiS~~~~Ad~~~v~a~~~~g~~~~~lv~~ 167 (377)
T cd01163 104 --------------IFGNAVSERG-SVRPGTFLTATVRDGGG-YVLNGKKFYSTGALFSDWVTVSALDEEGKLVFAAVPT 167 (377)
T ss_pred --------------EEECCCCCCC-CCCCCCCCEEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf --------------6213568877-76500041489973998-9998468524798658689999995599707999977
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589884034788630475545657727999869075---30077765799999973013335799999999999999999
Q gi|254780299|r 261 LLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIH 337 (562)
Q Consensus 261 ~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~ 337 (562)
+.|| |++.+.++|+|+|+++|+++.|+||++ +++|+++.++..+. .+...|+..++.++|++++|++.+++
T Consensus 168 ~~~G-----v~i~~~~~~~G~rgs~s~~l~fddv~Vp~~~llg~~~~~~~~~~-~~~~~~~~~aa~~lG~a~~Ald~a~~ 241 (377)
T cd01163 168 DRPG-----ITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTL-LTAIYQLVLAAVLAGIARAALDDAVA 241 (377)
T ss_pred CCCC-----CCCCCCCCCCCCCCCCCEEEEECCEEECHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988-----73577632246777874179855467069991687763888988-54899999999999999999999999
Q ss_pred HHHHCCCC-----CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98404622-----2423538888999999999999999999999988720111-----0367776556799999999999
Q gi|254780299|r 338 YARRRHVS-----GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKS-----RSEEAAYARIMAPITKYWCCKM 407 (562)
Q Consensus 338 yA~~R~~f-----G~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~-----~~~~~a~arl~t~iaK~~~~e~ 407 (562)
|+++|+++ +.+++++|.+|++|++|.+++++++++++++++.+|.... .+.+...+++.++++|++++|.
T Consensus 242 ya~~R~r~~~~~~~~~~~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~a~aK~~ase~ 321 (377)
T cd01163 242 YVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAKVVVTRL 321 (377)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99973120256753321356999999999999999999999999999988643355456445576799999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999995699885213000455188985001223220462227899999983
Q gi|254780299|r 408 APAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 408 a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
+.++++++||++||+||++|+|+||+|||+|+.++++.++.|++...-++|
T Consensus 322 a~~v~~~a~qi~GG~G~~~~~~leR~~RDar~~~~h~p~~~~~~~~~~~~~ 372 (377)
T cd01163 322 ALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVIYKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999998299977583599999977656104889999999999997
No 25
>cd01159 NcnH Naphthocyclinone hydroxylase (NcnH). Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=0 Score=364.46 Aligned_cols=320 Identities=16% Similarity=0.126 Sum_probs=242.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHCCCCC
Q ss_conf 9999999679620337766664447637999999999830144531221356778999985-087889873012001000
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALM-TTPRVHKDWAPKIFSREY 183 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L~-~~~e~~~~~lp~l~s~~~ 183 (562)
++++...+.||.++..++++++.+... +.......-.+..+.+......+.......+. ..++.++++...
T Consensus 26 e~~~~l~e~Gl~gl~vP~e~GG~G~~~--~~~~~v~eela~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 97 (370)
T cd01159 26 EVVRALREIGFFRMFVPKRYGGLEGDF--AEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGD------ 97 (370)
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC------
T ss_conf 999999987999879885459999899--999999999998772589999999899999987699999987357------
Q ss_pred CHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECCC-----CCEEEE
Q ss_conf 544266001552123554458888878665430278648966898451468634-21157999704699-----617999
Q gi|254780299|r 184 DPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVEG-----RVGCFL 257 (562)
Q Consensus 184 ~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~~-----Gls~Fl 257 (562)
.++..+++.....++|++++|| |+|||+|+|||+ +.+|+++|+|++++ +++.|+
T Consensus 98 -------------------~~~~~~~~~~~~~~~A~~~~~g-yvlnG~K~fiS~a~~Ad~~~v~a~~~~~~~~~~~~~~~ 157 (370)
T cd01159 98 -------------------GPDTLLAGSYAPGGRAERVDGG-YRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFV 157 (370)
T ss_pred -------------------CCCCCCCCCCCCCCEEEEECCE-EEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf -------------------8653132566777527997999-99973685446887678899999975667887469999
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEEC------CCCCH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 877589884034788630475545657727999869075---3007------77657---99999973013335799999
Q gi|254780299|r 258 VPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLG------DLNVS---TGPVEDMKILIYLDSAIMSV 325 (562)
Q Consensus 258 Vp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG------~~g~G---~~~i~~~l~~~Rl~~a~~~~ 325 (562)
||+. ++++.+.++|+|+|+++|+++.|+||.+ ++++ ..+.+ ....+.++...++.+++.++
T Consensus 158 v~~~-------g~~i~~~~~~~G~r~t~s~~v~~~dv~VP~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~l 230 (370)
T cd01159 158 VPRA-------EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSL 230 (370)
T ss_pred EECC-------CEEECCCCCCCCCCCCCCCCCEECCEECCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7068-------368887778786887888665047745459984664422245653002588898898999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCC---CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHH
Q ss_conf 9999999999999840462---22423538888999999999999999999999988720111036-7776556799999
Q gi|254780299|r 326 SGMRVSLAEAIHYARRRHV---SGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE-EAAYARIMAPITK 401 (562)
Q Consensus 326 G~ar~al~~A~~yA~~R~~---fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~-~~a~arl~t~iaK 401 (562)
|++++|++.+++|+++|+| ||+||.++|.||++|++|.+++++++++++++++.+|++..... .....+....++|
T Consensus 231 Gia~~al~~a~~ya~~R~q~~~fg~~i~~~q~vq~~la~m~~~l~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~ak 310 (370)
T cd01159 231 GAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDA 310 (370)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999846525457887555899999999999999999999999999999767437889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCH-HHHHHHHHHHHC
Q ss_conf 9999999999956998852130004551889850012232204622-278999999831
Q gi|254780299|r 402 YWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSG-NAMVLDVLNLLE 459 (562)
Q Consensus 402 ~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~-~I~aldv~r~l~ 459 (562)
.++++.+.++++.+||++||+||++|+|+||+|||+|+..|+|||+ +|+.+.+.|.+.
T Consensus 311 ~~a~e~a~~v~~~a~q~~Gg~g~~~~~pleR~~RD~R~~~~h~g~~~e~~~~~igra~l 369 (370)
T cd01159 311 AYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALL 369 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99999999999999998739998016269999999858872776789999999999961
No 26
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=341.73 Aligned_cols=371 Identities=14% Similarity=0.147 Sum_probs=289.9
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 99800167889999972042110789999998501899999986343698462017998521365668899999999996
Q gi|254780299|r 33 GMNAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIH 112 (562)
Q Consensus 33 g~n~~~~D~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~ 112 (562)
+-+.|...|-.+.++..-.+...++=..| . ..+..++....|...=... +-+.+| +.++...+
T Consensus 57 d~elF~G~Pdw~~l~~~~~~~Lt~eEqaf---l-d~~v~~lc~m~ddw~i~~~----------~~dlp~---e~w~~~k~ 119 (771)
T PRK13026 57 EGELFRGKPDWQKLHSYPKPTLTAEEQAF---I-DNQVETLLSMLDDFDIVHN----------RKDLPP---EVWDYLKK 119 (771)
T ss_pred EHHHCCCCCCHHHHHCCCCCCCCHHHHHH---H-CCHHHHHHHHHHHHHHHHH----------HCCCCH---HHHHHHHH
T ss_conf 42130899889999538988899899977---3-4799999986126764411----------144999---99999997
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCC-CCC--CCCCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCCCCHH
Q ss_conf 79620337766664447637999999999-83014-453--1221356778999985--087889873012001000544
Q gi|254780299|r 113 DGLHCSIWDRSFEPVVRKQAHKIRAARLY-LMAQL-EAG--HLMSPSVTSASMVALM--TTPRVHKDWAPKIFSREYDPT 186 (562)
Q Consensus 113 ~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~-l~~~~-~~g--~~cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~~~~~ 186 (562)
+|..++..+.+|++. +.+...+..... +.+.+ ..+ ++-|-+. |-..+|. +++|||++|||+|.++++
T Consensus 120 ~~ffgmiIpkeyGG~--~fS~~a~s~v~~ki~s~s~~~avtvmvpNSL--GpgeLL~~yGTeeQK~~yLPrLA~Ge~--- 192 (771)
T PRK13026 120 EGFFALIIPKEYGGK--AFSAYANSTIVSKIATRSVSAAVTVMVPNSL--GPGELLTHYGTQEQKDYWLPRLADGTE--- 192 (771)
T ss_pred CCCEEEEECHHHCCC--CCCHHHHHHHHHHHHHCCCCCEEEEECCCCC--CHHHHHHHCCCHHHHHHHHHCCCCCCE---
T ss_conf 794589821644886--5688899999999983262011466246766--838999870889998633220046774---
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEE-----CCCC--EEEECCEE-EEEECCCCCEEEEEEEC-C-------
Q ss_conf 2660015521235544588888786654302786-----4896--68984514-68634211579997046-9-------
Q gi|254780299|r 187 NKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQK-----ISDG--IYCLSGHK-WFLSSPMSDAFIMLAQV-E------- 250 (562)
Q Consensus 187 ~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~-----~gdg--~y~LnG~K-wf~sa~~ad~~lVlArt-~------- 250 (562)
+.||+||||.+|||.+++.++++. +|+. +|+|||.| |+|++|.|+++-+..+. |
T Consensus 193 ----------IpcFaLTeP~aGSDA~~~~d~gvv~~~~~dG~~~lg~~Ln~~KryITlapvAtviglafk~~DPd~llg~ 262 (771)
T PRK13026 193 ----------IPCFALTGPEAGSDAGAIPDTGIVCKGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGD 262 (771)
T ss_pred ----------EEECCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCHHHCCC
T ss_conf ----------0022258998888744687506985024467448999987778777448752189999870276121267
Q ss_pred ---CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEEC---CCCCHHHHHHHHHHHHH-HHH
Q ss_conf ---9617999877589884034788630475545657727999869075---3007---77657999999730133-357
Q gi|254780299|r 251 ---GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLG---DLNVSTGPVEDMKILIY-LDS 320 (562)
Q Consensus 251 ---~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG---~~g~G~~~i~~~l~~~R-l~~ 320 (562)
.||||||||+++|| +++.+.++++|.... ++.+.++||.. ++|| +.|+||+..++.++.+| +++
T Consensus 263 ~~~~GIT~aLvp~~~pG-----v~iG~rh~plg~~f~-ng~~~g~dV~IP~d~iiGG~~~~G~Gw~mlmecL~~GRgIsL 336 (771)
T PRK13026 263 KKELGITCALIPTDHPG-----VEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISL 336 (771)
T ss_pred CCCCCEEEEEECCCCCC-----CEECCCCCCCCCCCC-CCCEEEEEEEEEHHHCCCCCHHCCCHHHHHHHHHHCCCCCCH
T ss_conf 76565378981589998-----240255377657767-896155688963676148702028539999999721454235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999984046222423538888999999999999999999999988720111036777655679999
Q gi|254780299|r 321 AIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPIT 400 (562)
Q Consensus 321 a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~ia 400 (562)
.+.++|.++.|++.+..||+.|+|||+||++|+.||.+||+|....+.+.+....++..+|++..+. +.++|+
T Consensus 337 pA~~~g~ak~a~~~~~aYA~~R~QFg~PIg~FegIqekLA~ma~~tY~~~A~~~~t~~~ld~g~kPs-------V~sAi~ 409 (771)
T PRK13026 337 PALGTASGHMATKTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGLDLGVKPS-------VVTAIA 409 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHHH
T ss_conf 3544899999999999999999982895785323899999999999999999999998885699823-------999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHCCHHHHHCCCCHHHHH
Q ss_conf 999999999999569988521300045--518898500122322046222789
Q gi|254780299|r 401 KYWCCKMAPAVIAEAMECIGGSGYIEE--RSIARHYRESPANSILLGSGNAMV 451 (562)
Q Consensus 401 K~~~~e~a~~v~~~Aiqi~GG~Gy~ee--~~leRl~RDA~v~~I~EGt~~I~a 451 (562)
||.++|.+..++.++|.||||.|.+.. +-+.+.|.-+||.-.-||. ||+.
T Consensus 410 Ky~~Te~~R~~~~~aMDi~gG~~I~~Gp~N~l~~~Y~~~PI~ITVEGA-NILT 461 (771)
T PRK13026 410 KYHMTELGRTVVNDAMDIHAGKAIQLGPKNYLGHPYMAVPIAITVEGA-NILT 461 (771)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCEEEECCCH-HHHH
T ss_conf 998889999998764223058710147614654101569756722508-8888
No 27
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=339.84 Aligned_cols=370 Identities=16% Similarity=0.174 Sum_probs=289.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 99800167889999972042110789999998501899999986343698462017998521365668899999999996
Q gi|254780299|r 33 GMNAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIH 112 (562)
Q Consensus 33 g~n~~~~D~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~ 112 (562)
+-+.|...|-.+.++..-.+...+|=..| . ..+..++....|...=... .-+.+| +.++...+
T Consensus 58 ~~~lf~G~pdw~~l~~~~~~~Lt~eEqaF---l-d~~v~~lc~m~ddw~i~~~----------~~dlp~---~~w~~~k~ 120 (761)
T PRK09463 58 EGELFSGKPDWKKLLNYPKPTLTAEEQAF---L-DGPVEELCRMVDDWQITHE----------LADLPP---EVWQFIKE 120 (761)
T ss_pred EHHHHCCCCCHHHHHCCCCCCCCHHHHHH---H-CCHHHHHHHHHHHHHHHHH----------HCCCCH---HHHHHHHH
T ss_conf 44040899889999548977589999977---4-3789999986017875400----------145999---99999997
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCC-CCCCC--CCHHHHHHHHHHHH--CCHHHHHHHHHHHCCCCCCHH
Q ss_conf 7962033776666444763799999999-983014-45312--21356778999985--087889873012001000544
Q gi|254780299|r 113 DGLHCSIWDRSFEPVVRKQAHKIRAARL-YLMAQL-EAGHL--MSPSVTSASMVALM--TTPRVHKDWAPKIFSREYDPT 186 (562)
Q Consensus 113 ~Gl~~~~~~~~~~~~~~~~~~~~~~a~~-~l~~~~-~~g~~--cp~~mt~~a~~~L~--~~~e~~~~~lp~l~s~~~~~~ 186 (562)
+|..++..+.+|++. +.+...+.... .+.+.+ ..++. -|-+. |-..+|. +++|||++|||+|.++++
T Consensus 121 ~~ffgmiIpkeyGGl--~fs~~a~s~v~~kias~s~~~avtvmvpNSL--GpgeLL~~yGTeeQK~~yLPrLA~Ge~--- 193 (761)
T PRK09463 121 HGFFGMIIPKEYGGL--EFSAYAHSRVLQKLASRSGTLAVTVMVPNSL--GPGELLLHYGTDEQKDHYLPRLARGEE--- 193 (761)
T ss_pred CCCEEEEECHHHCCC--CCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CHHHHHHHHCCHHHHHHHCCCCCCCCC---
T ss_conf 792489812643897--6788999999999972585422788337887--869999882889998633211036773---
Q ss_pred HCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEE-----CCCCEEE---ECCEE-EEEECCCCCEEEEEEECC-------
Q ss_conf 2660015521235544588888786654302786-----4896689---84514-686342115799970469-------
Q gi|254780299|r 187 NKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQK-----ISDGIYC---LSGHK-WFLSSPMSDAFIMLAQVE------- 250 (562)
Q Consensus 187 ~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~-----~gdg~y~---LnG~K-wf~sa~~ad~~lVlArt~------- 250 (562)
+.||+||||.+|||.+++.++++. +|++ |+ |||.| |+|.+|.++++.+..++.
T Consensus 194 ----------IpcFaLTeP~AGSDA~s~~d~gvv~~~~~~G~~-~lg~~Ln~~KryITlapvAtv~glafk~~DP~~llg 262 (761)
T PRK09463 194 ----------IPCFALTSPEAGSDAGSIPDTGVVCKGEWEGEE-VLGMRLTWNKRYITLAPVATVLGLAFKLYDPDGLLG 262 (761)
T ss_pred ----------CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC-EEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCC
T ss_conf ----------103204899888874458762488534225761-699997667778854875417999997468621247
Q ss_pred ----CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCC---CCHHHHHHHHHHHHH-HH
Q ss_conf ----9617999877589884034788630475545657727999869075---300777---657999999730133-35
Q gi|254780299|r 251 ----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDL---NVSTGPVEDMKILIY-LD 319 (562)
Q Consensus 251 ----~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~---g~G~~~i~~~l~~~R-l~ 319 (562)
.||||||||+++|| +++.+.++++|.... ++.+..+||.. ++||++ |+||+..++.++.+| ++
T Consensus 263 ~~~~~GIT~aLip~~~pG-----v~iG~rh~plg~~F~-Ngp~~g~dV~VP~d~iIGg~~~~G~Gw~mlme~L~~GR~Is 336 (761)
T PRK09463 263 DKEDLGITCALIPTDTPG-----VEIGRRHFPLNVPFQ-NGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGIS 336 (761)
T ss_pred CCCCCCEEEEEECCCCCC-----CEECCCCCCCCCCCC-CCCEECCCEEECHHHHCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 776566258871289998-----340465586767657-88524451685188804884235860999999871576524
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 79999999999999999998404622242353888899999999999999999999998872011103677765567999
Q gi|254780299|r 320 SAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPI 399 (562)
Q Consensus 320 ~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~i 399 (562)
+.+.++|.++.++..+..||+.|+|||+||++|+.||.+||+|....+.+.+....++..+|++..+. +.++|
T Consensus 337 LpA~a~G~ak~a~~~a~aYA~~RkQFg~PIg~FegIqekLA~ma~~tY~~~A~~~~t~~~~d~g~kPs-------v~sAi 409 (761)
T PRK09463 337 LPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGVEEPLARIAGNAYLMDAARTLTTAAVDLGEKPS-------VISAI 409 (761)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-------HHHHH
T ss_conf 00545689999999999999989884886454556899999999999999999999999986799951-------89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHCCHHHHHCCCCHHHHH
Q ss_conf 9999999999999569988521300045--518898500122322046222789
Q gi|254780299|r 400 TKYWCCKMAPAVIAEAMECIGGSGYIEE--RSIARHYRESPANSILLGSGNAMV 451 (562)
Q Consensus 400 aK~~~~e~a~~v~~~Aiqi~GG~Gy~ee--~~leRl~RDA~v~~I~EGt~~I~a 451 (562)
+||.++|++..++.++|.||||.|.+.. +-+.+.|.-+||.-.-||. ||+.
T Consensus 410 ~K~~~Te~~r~~~~~aMDi~gG~~I~~Gp~N~l~~~Y~~~Pi~ITVEGA-NILT 462 (761)
T PRK09463 410 AKYHLTERGRQVINDAMDIHGGKGICLGPNNYLARAYQAAPIAITVEGA-NILT 462 (761)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCCCEEEEECCH-HHHH
T ss_conf 9999889999887663000468743137720442221258857885417-8888
No 28
>KOG0138 consensus
Probab=100.00 E-value=0 Score=328.20 Aligned_cols=330 Identities=19% Similarity=0.226 Sum_probs=270.3
Q ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCCCCCCCHHHHH--HHHH-HHHCCHHHHHH
Q ss_conf 66889999999999679620337766664447637999999999-83014453122135677--8999-98508788987
Q gi|254780299|r 98 EFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLY-LMAQLEAGHLMSPSVTS--ASMV-ALMTTPRVHKD 173 (562)
Q Consensus 98 ~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~-l~~~~~~g~~cp~~mt~--~a~~-~L~~~~e~~~~ 173 (562)
+|++ +++...-+.|+.+-++ .+++.++...+.+...- -..-++.+.---++... +.-+ .+-++++|+++
T Consensus 86 ~F~~---~i~pemGsmGvlG~ti----kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~Qkqk 158 (432)
T KOG0138 86 VFDR---EIIPEMGSMGVLGPTI----KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQK 158 (432)
T ss_pred CCCH---HHHHHHHCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 4885---4423432133356765----57677744778889999999886320103213353342546865177888764
Q ss_pred HHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCC-EEEECCEE-EEEECCCCCEEEEEEEC--
Q ss_conf 301200100054426600155212355445888887866543027864896-68984514-68634211579997046--
Q gi|254780299|r 174 WAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG-IYCLSGHK-WFLSSPMSDAFIMLAQV-- 249 (562)
Q Consensus 174 ~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg-~y~LnG~K-wf~sa~~ad~~lVlArt-- 249 (562)
|+|.|.++. .++++++|||++|||.+.+.|+|+.+..+ .|.|||+| |++|.|.+|+++|+||.
T Consensus 159 YlPslA~g~-------------~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t 225 (432)
T KOG0138 159 YLPSLAKGK-------------LIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCET 225 (432)
T ss_pred HHHHHHCCC-------------EEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEECCEEEEECCCCCCCEEEEEEECCC
T ss_conf 223553276-------------5458731478889896666523577268855897780234337863205799874156
Q ss_pred CCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99617999877589884034788630475545657727999869075---300777657999999730133357999999
Q gi|254780299|r 250 EGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVS 326 (562)
Q Consensus 250 ~~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G 326 (562)
++.+--|+|+|+.+| ++..+++.|++.|.++|+.+-.++|++ +++ +.-.+|.--+..+|.+|++++++.+|
T Consensus 226 ~n~I~GFi~~k~~~G-----L~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~L-Pg~~s~qgpf~cLnnaR~giAWg~lG 299 (432)
T KOG0138 226 DNKIRGFILEKGMRG-----LSAPKIEGKFSLRASATGMILMDGVEVPEENLL-PGASSLQGPFGCLNNARYGIAWGALG 299 (432)
T ss_pred CCCEEEEEEECCCCC-----CCCCCCCCEEEEEECCCCCEEECCCCCCHHHCC-CCCCCCCCCHHHHHHHHHHEEEHHCH
T ss_conf 783446887068887-----767776870566651567556448757724218-88311378365553334410100020
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999984046222423538888999999999999999999999988720111036777655679999999999
Q gi|254780299|r 327 GMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCK 406 (562)
Q Consensus 327 ~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e 406 (562)
+++.|++.|..|..+|+|||+||+.+|++|.+|+||-.++.....+++++.++.|++...+.. +++.|.|.|-
T Consensus 300 ase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~q-------iSl~Krn~~g 372 (432)
T KOG0138 300 ASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQ-------ISLLKRNNCG 372 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-------HHHHHHCCCH
T ss_conf 678999999999888887587126778999999999999999999888762114215688466-------6787630521
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 999999569988521300045518898500122322046222789999998312
Q gi|254780299|r 407 MAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 407 ~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
.+.+++..+-+++||+|...||.+.|++-|--....||||.+|.+|.+.|++..
T Consensus 373 KaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138 373 KALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHH
T ss_conf 489999999987457762268999998747520110345304777765113320
No 29
>KOG1469 consensus
Probab=100.00 E-value=2.4e-42 Score=302.30 Aligned_cols=328 Identities=17% Similarity=0.187 Sum_probs=275.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CC-CCCCHHHHHHHHHHH--HCCHHHHHH
Q ss_conf 6889999999999679620337766664447637999999999830144--53-122135677899998--508788987
Q gi|254780299|r 99 FHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLE--AG-HLMSPSVTSASMVAL--MTTPRVHKD 173 (562)
Q Consensus 99 ~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~--~g-~~cp~~mt~~a~~~L--~~~~e~~~~ 173 (562)
.||-...|++.+..+|++++..+....-++.+..++.-+...+++.-+- +- +-|-.-=| |-..+| .+++||+.+
T Consensus 25 ~~p~iekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDT-GNMEvl~rYGseeQks~ 103 (392)
T KOG1469 25 KPPVIEKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDT-GNMEVLHRYGSEEQKSQ 103 (392)
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCC-CCEEEHHHHCCHHHHHH
T ss_conf 98158899998875026775407888764267540159999998563413610025789998-87564124178888765
Q ss_pred HHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCC-CCCCHHHCCEEEEECCCCEEEECCEEEEEEC---CCCCEEEEEEEC
Q ss_conf 301200100054426600155212355445888-8878665430278648966898451468634---211579997046
Q gi|254780299|r 174 WAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKR-GGTDIAAITSQGQKISDGIYCLSGHKWFLSS---PMSDAFIMLAQV 249 (562)
Q Consensus 174 ~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~-~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa---~~ad~~lVlArt 249 (562)
||-+|+.++ +.+||+||||+ +.||..+++..-++++| .|+|||+|||+|+ |.|.+.+++.+|
T Consensus 104 WL~PLLeG~-------------irScFaMTEP~VASSDATNIe~SI~r~~~-~YvINg~KWw~sga~~PkCrv~i~mGkt 169 (392)
T KOG1469 104 WLIPLLEGN-------------IRSCFAMTEPDVASSDATNIECSIRRDGD-SYVINGKKWWISGAGDPKCRIAIFMGKT 169 (392)
T ss_pred HHHHHHCCC-------------CEEEEEECCCCCCCCCCCCCEEEEEECCC-EEEEECCEEEECCCCCCCEEEEEEEECC
T ss_conf 768876377-------------02467605886335666640588997287-7898061456527999862799997046
Q ss_pred CC-------CCEEEEEECCCCCCCCCCEEEEEECCCCCCCCC--CEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHH
Q ss_conf 99-------617999877589884034788630475545657--727999869075---300777657999999730133
Q gi|254780299|r 250 EG-------RVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSN--ATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIY 317 (562)
Q Consensus 250 ~~-------Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~--~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~R 317 (562)
+. ..|+.|||+++|| |.|.|.-..+|.--. +..|+.|++|++ |++-.+|+||.+....+...|
T Consensus 170 ~~~~~~rhkQqSmiLVpM~TpG-----vkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGR 244 (392)
T KOG1469 170 DNTSASRHKQQSMILVPMNTPG-----VKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGR 244 (392)
T ss_pred CCCCCCHHHCCCEEEEECCCCC-----EEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEECCCCCCEEECCCCCCCH
T ss_conf 8775661022417998558997-----26752014641346899862688777874134456417876254126668737
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 35799999999999999999984046222423538888999999999999999999999988720111036777655679
Q gi|254780299|r 318 LDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMA 397 (562)
Q Consensus 318 l~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t 397 (562)
++.++.-+|.++|+++...+.+.+|.+|||+|.+|..+.+.||+..+++|.+|+|++++|..+|...+.. ++...
T Consensus 245 iHHcMRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~-----Ak~~i 319 (392)
T KOG1469 245 IHHCMRLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKG-----AKKEI 319 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHE
T ss_conf 8899998617899999999998878773543554023999999877676652443423666665206423-----42120
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHH
Q ss_conf 999999999999999569988521300045518898500122322046222789
Q gi|254780299|r 398 PITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMV 451 (562)
Q Consensus 398 ~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~a 451 (562)
+++|..+..++..+.+.|||++||.|...++|+.++|--++++.|-.|..++..
T Consensus 320 AMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL 373 (392)
T KOG1469 320 AMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHL 373 (392)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCH
T ss_conf 023311717789999999997367777889643578777654772268874006
No 30
>cd01150 AXO Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.7e-34 Score=249.58 Aligned_cols=303 Identities=17% Similarity=0.139 Sum_probs=245.2
Q ss_pred CCCCCCCCHHHHHHH-HHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECC
Q ss_conf 445312213567789-99985--087889873012001000544266001552123554458888878665430278648
Q gi|254780299|r 146 LEAGHLMSPSVTSAS-MVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKIS 222 (562)
Q Consensus 146 ~~~g~~cp~~mt~~a-~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~g 222 (562)
.+....-|+.+..+. .++|. +++|+.++|+|+..+.+ +++++++||-.+||||++++|||+-|.
T Consensus 94 ~d~~~~~~~~vh~~mF~~tI~~lGT~eq~~~wl~~~~~~~-------------i~G~yaqTELGHGSnv~gleTTAtyD~ 160 (610)
T cd01150 94 YDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLE-------------IIGCFAQTELGHGSNLQGLETTATYDP 160 (610)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-------------EEEEEEECCCCCCCCCCCCEEEEEECC
T ss_conf 4811150134308769999986089999999986885386-------------220110002344444567544899868
Q ss_pred C-CEEEEC-----CEEEEEEC-C-CCCEEEEEEEC--C---CCCEEEEEECCCCCC--CCCCEEEEEECCCCCCCCCCEE
Q ss_conf 9-668984-----51468634-2-11579997046--9---961799987758988--4034788630475545657727
Q gi|254780299|r 223 D-GIYCLS-----GHKWFLSS-P-MSDAFIMLAQV--E---GRVGCFLVPRLLEDG--SPNGLCYQRLKNKIGNRSNATV 287 (562)
Q Consensus 223 d-g~y~Ln-----G~Kwf~sa-~-~ad~~lVlArt--~---~Gls~FlVp~~~pgg--~~n~v~i~r~~~klG~r~~~t~ 287 (562)
. ++|+|| ..|||+.+ + .|.+.+|+||. + .|+..|+||-+.++. ..+||+|+.+-.|+|..+..++
T Consensus 161 ~t~EFVinTPt~~A~KwW~G~lg~~athavV~AqL~i~gk~~Gvh~FvVpIRd~~th~~lPGV~vGDiG~K~G~ngvDNG 240 (610)
T cd01150 161 LTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDNG 240 (610)
T ss_pred CCCEEEECCCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCE
T ss_conf 88978878999123225466533567779999999889823441248987357887888999666247665686777761
Q ss_pred EEEECCEEE---EEE----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
Q ss_conf 999869075---300----------------777657999999730133357999999999999999999840462224-
Q gi|254780299|r 288 ELEFSNTFG---FLL----------------GDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGG- 347 (562)
Q Consensus 288 ei~f~~~~~---~ll----------------G~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~- 347 (562)
.+.|++|+. +|| ..+...+..|+..+...|+.+...+...+.+|+-+|+.|+..|+|||.
T Consensus 241 ~l~FdnvRIPR~nmL~r~~~V~~dG~y~~~~~~~~~~y~~ml~~~~~gR~~i~~~~~~~l~~a~tIAiRYs~vRrQf~~~ 320 (610)
T cd01150 241 FLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPK 320 (610)
T ss_pred EEEECEEECCHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 78844363167998764083589986657888666789999999971077899999999999999999987303014899
Q ss_pred ------CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------2353888899999999999999999999998872011-----10367776556799999999999999995699
Q gi|254780299|r 348 ------ILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK-----SRSEEAAYARIMAPITKYWCCKMAPAVIAEAM 416 (562)
Q Consensus 348 ------~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~-----~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Ai 416 (562)
||+++|..|++|--+-+...+.......+...+++.. .+...-...-.+++..|.++|..+...+.+|-
T Consensus 321 ~~~~E~~iidY~tqQ~rLlP~LA~ayA~~~~~~~l~~~~~~~~~~~~~~~~~~l~elHalssglKa~~Tw~a~~~ie~cR 400 (610)
T cd01150 321 PSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQECR 400 (610)
T ss_pred CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99974223022978988799999999999999999999999998773377456789999999999998999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 885213000455188985001223220462227899999983126
Q gi|254780299|r 417 ECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 417 qi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
|.+||+||...+.++.++-|.-++..|||-|+|+.+-+.|.|.|.
T Consensus 401 ~aCGGhGy~~~sgl~~l~~d~~~~~TyEGDN~VL~qQ~ar~Llk~ 445 (610)
T cd01150 401 EACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610)
T ss_pred HHCCCCCCHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 744775423223723555246754320200999999999999999
No 31
>pfam00441 Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain. C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.
Probab=100.00 E-value=6.7e-33 Score=238.87 Aligned_cols=149 Identities=28% Similarity=0.347 Sum_probs=142.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65799999973013335799999999999999999984046222423538888999999999999999999999988720
Q gi|254780299|r 303 NVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDE 382 (562)
Q Consensus 303 g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~ 382 (562)
|+||++++..++++|+.+++.++|.++++++++++|+++|++||+||+++|.||++|++|.+++++++++++++++.+|+
T Consensus 1 G~G~~~~~~~L~~eR~~~a~~~~g~~~~~l~~~~~~a~~R~~~G~~l~~~~~vq~~la~~~~~~~~~r~~~~~a~~~~~~ 80 (150)
T pfam00441 1 GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIRHKLADMAAELEAARLLVYRAAEALDA 80 (150)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 97299999999999999999999999999999999712301599718756999999886307999999999999999985
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 1110367776556799999999999999995699885213000455188985001223220462227899999983
Q gi|254780299|r 383 AKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 383 ~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
+..... .++++|+++|+.+.++++.|+|++||.||++|+|++|+|||+++.+|||||++||...+.|.+
T Consensus 81 ~~~~~~-------~~s~~K~~~te~~~~~~~~a~~l~G~~G~~~~~~~~r~~rdar~~~I~~Gt~ei~r~iia~~~ 149 (150)
T pfam00441 81 GGPDPA-------EAAMAKLYASELAQEVADLAMQLLGGYGYSREYPLERLYRDARVLRIGEGTSEIQRNIIARRL 149 (150)
T ss_pred CCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 999579-------999999999999999999999863866047787999999988287102888999999999986
No 32
>KOG0135 consensus
Probab=99.95 E-value=1.2e-26 Score=196.95 Aligned_cols=310 Identities=17% Similarity=0.164 Sum_probs=234.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHH----HHHHHHHHCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999999998301445312213567----7899998508788987301200100054426600155212355445888887
Q gi|254780299|r 134 KIRAARLYLMAQLEAGHLMSPSVT----SASMVALMTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGT 209 (562)
Q Consensus 134 ~~~~a~~~l~~~~~~g~~cp~~mt----~~a~~~L~~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GS 209 (562)
...++.+......+.++.--+... .+++..+ ++..-. +|+.+.-..+ ..+|++|||-.+||
T Consensus 105 ~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~-GT~rH~-~yi~~~~n~e-------------v~gcfamTEl~HGS 169 (661)
T KOG0135 105 LKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSM-GTKRHH-DYIQKTENYE-------------VKGCFAMTELGHGS 169 (661)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-CCHHHH-HHHHHHHCCE-------------EEEEEEEEEECCCC
T ss_conf 88999999985227112265644453363788851-528789-9986332122-------------45457876414776
Q ss_pred CHHHCCEEEEECC-CCEEEECC-----EEEEE-ECC-CCCEEEEEEEC-----CCCCEEEEEECCCCC--CCCCCEEEEE
Q ss_conf 8665430278648-96689845-----14686-342-11579997046-----996179998775898--8403478863
Q gi|254780299|r 210 DIAAITSQGQKIS-DGIYCLSG-----HKWFL-SSP-MSDAFIMLAQV-----EGRVGCFLVPRLLED--GSPNGLCYQR 274 (562)
Q Consensus 210 Dv~~~~T~A~~~g-dg~y~LnG-----~Kwf~-sa~-~ad~~lVlArt-----~~Gls~FlVp~~~pg--g~~n~v~i~r 274 (562)
++.+++|+|+-|+ .++++||- .|||+ +++ .+.+.+|+|+. +.|+..|+||-+.|+ -+.+||+|+.
T Consensus 170 Nt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD 249 (661)
T KOG0135 170 NTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGD 249 (661)
T ss_pred CCCCEEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCEECC
T ss_conf 64531455412698772675489688888875032235247999888653686673125888840563357799826310
Q ss_pred ECCCCCCCCCCEEEEEECCEEE---EEE----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0475545657727999869075---300----------------777657999999730133357999999999999999
Q gi|254780299|r 275 LKNKIGNRSNATVELEFSNTFG---FLL----------------GDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335 (562)
Q Consensus 275 ~~~klG~r~~~t~ei~f~~~~~---~ll----------------G~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A 335 (562)
.-+|.|.++...+.+.|++++. +|| -++++-|-.++..+..+|++++..+++.+.-++.+|
T Consensus 250 ~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIA 329 (661)
T KOG0135 250 CGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIA 329 (661)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEECCCCCHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33312656665754898425585688865215768997045367886566341230345522699999998888778776
Q ss_pred HHHHHHCCCCCC-------CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHH
Q ss_conf 999840462224-------235388889999999999999999999999887201110367---7765567999999999
Q gi|254780299|r 336 IHYARRRHVSGG-------ILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEE---AAYARIMAPITKYWCC 405 (562)
Q Consensus 336 ~~yA~~R~~fG~-------~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~---~a~arl~t~iaK~~~~ 405 (562)
+.|...|+|||. ||.|+|..|++|.-+-+...+.....-.+...+++-.....+ .+-...+++-.|.+++
T Consensus 330 IRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~T 409 (661)
T KOG0135 330 IRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVAT 409 (661)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHH
T ss_conf 66687686508877998332453415788878999999999999999999999886621023203678998844530454
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999995699885213000455188985001223220462227899999983
Q gi|254780299|r 406 KMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458 (562)
Q Consensus 406 e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l 458 (562)
....+...+|-|+.||+||+.++-+..+=-|--++..|||-|||+-..+.+.|
T Consensus 410 W~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~L 462 (661)
T KOG0135 410 WHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNAL 462 (661)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCCEEHHHHHHHHH
T ss_conf 76577999999871660088887744455678855420067520799999999
No 33
>pfam08028 Acyl-CoA_dh_2 Acyl-CoA dehydrogenase, C-terminal domain.
Probab=99.92 E-value=3.5e-24 Score=180.31 Aligned_cols=130 Identities=25% Similarity=0.304 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHH
Q ss_conf 357999999999999999999840462--22423538888999999999999999999999988720111036-777655
Q gi|254780299|r 318 LDSAIMSVSGMRVSLAEAIHYARRRHV--SGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSE-EAAYAR 394 (562)
Q Consensus 318 l~~a~~~~G~ar~al~~A~~yA~~R~~--fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~-~~a~ar 394 (562)
|++++.++|++++|++++++|+++|++ ||+||.++|.+|.+|++|.+++++++++++++++.+|+...... .....+
T Consensus 1 lgiaA~~lG~a~~ald~~~~~~~~R~~~~~g~~l~~~~~~q~~la~~~~~l~aar~~~~~~a~~~~~~~~~g~~~~~~~~ 80 (134)
T pfam08028 1 LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLERAADRIWAHADRGDEVTPEER 80 (134)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 95999999999999999999997176666886699777899999999999999999999999999975653776999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCH
Q ss_conf 67999999999999999956998852130004551889850012232204622
Q gi|254780299|r 395 IMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSG 447 (562)
Q Consensus 395 l~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~ 447 (562)
..+.++|.++++.+.+++++++|++||.||.+++|++|+|||+++.+|+||++
T Consensus 81 ~~~~~~k~~a~~~a~~v~~~~~~~~Gg~g~~~~~~~~R~~RD~r~~~~H~~~~ 133 (134)
T pfam08028 81 ARARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFWRDAHAGAAHAGLD 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999738531668983999999998999727789
No 34
>KOG0136 consensus
Probab=99.90 E-value=8.1e-22 Score=164.46 Aligned_cols=299 Identities=15% Similarity=0.130 Sum_probs=224.9
Q ss_pred CCCCCCHHHHHHH-HHHHH--CCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCC-
Q ss_conf 5312213567789-99985--0878898730120010005442660015521235544588888786654302786489-
Q gi|254780299|r 148 AGHLMSPSVTSAS-MVALM--TTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISD- 223 (562)
Q Consensus 148 ~g~~cp~~mt~~a-~~~L~--~~~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gd- 223 (562)
..-..|+....+. +++|+ +++||.++|+++-...+ ++++.+.||-++||.++.++|+|+-|..
T Consensus 105 ~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~-------------IiGtYAQTElGHGTnl~~LET~AtyD~~T 171 (670)
T KOG0136 105 GQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNME-------------IIGTYAQTELGHGTNLRGLETTATYDPKT 171 (670)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCE-------------EEEEEHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf 77884255546564677614899999999997510561-------------78751323423442111430022235776
Q ss_pred CEEEEC-----CEEEEEEC--CCCCEEEEEEEC--C---CCCEEEEEECCCCC--CCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 668984-----51468634--211579997046--9---96179998775898--8403478863047554565772799
Q gi|254780299|r 224 GIYCLS-----GHKWFLSS--PMSDAFIMLAQV--E---GRVGCFLVPRLLED--GSPNGLCYQRLKNKIGNRSNATVEL 289 (562)
Q Consensus 224 g~y~Ln-----G~Kwf~sa--~~ad~~lVlArt--~---~Gls~FlVp~~~pg--g~~n~v~i~r~~~klG~r~~~t~ei 289 (562)
.+++|| ..|||..+ ..+.+.+|+|+. . -|+-.|+||-+.++ ....||.|+.+-.|||..+...+.+
T Consensus 172 ~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL 251 (670)
T KOG0136 172 QEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFL 251 (670)
T ss_pred CEEEECCCCCCEECCCCCCCCCCCCHHEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCEE
T ss_conf 64884589743002468766553320201245556461114540589723754467999974067776546667766511
Q ss_pred EECCEEE---EEE------CCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------C
Q ss_conf 9869075---300------7776579999-----99730133357999999999999999999840462224-------2
Q gi|254780299|r 290 EFSNTFG---FLL------GDLNVSTGPV-----EDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGG-------I 348 (562)
Q Consensus 290 ~f~~~~~---~ll------G~~g~G~~~i-----~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~fG~-------~ 348 (562)
.|++++. +++ -+.|...+-- ...+-..|-.+.....-....|.-+|+.|+.-|+|+.- .
T Consensus 252 ~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~q 331 (670)
T KOG0136 252 GFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQ 331 (670)
T ss_pred EECCEEECHHHHHHHHHEECCCCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 02236615276420111116787705788541330136998504687799999998999999888761268899998853
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3538888999999999999999999999988-------720111036777655679999999999999999569988521
Q gi|254780299|r 349 LIDQPVMKRAIADIALDIAAATALSFRLANS-------FDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGG 421 (562)
Q Consensus 349 L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~-------~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG 421 (562)
|+|||..|.+|--.-+...|-+.....+-+. ++++.- ..-+-+-.+++-.|..+|..+..-+++|-+.+||
T Consensus 332 IlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~--s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGG 409 (670)
T KOG0136 332 ILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNF--SRLPELHALSAGLKAVVTWDTAQGIEQCRLACGG 409 (670)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 53126378787588878998899899999999999998846882--2244778877656788666566279999986277
Q ss_pred CCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 3000455188985001223220462227899999983126
Q gi|254780299|r 422 SGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKG 461 (562)
Q Consensus 422 ~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~ 461 (562)
+||..-+.++-+|-.+-..-.|||-|.||-|.++|.|.|.
T Consensus 410 HGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs 449 (670)
T KOG0136 410 HGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKS 449 (670)
T ss_pred CCCHHHCCCCCCEEEEEEEEEEECCCEEEHHHHHHHHHHH
T ss_conf 5405442896201420013222236343138999999999
No 35
>pfam02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain. Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.
Probab=99.45 E-value=1e-13 Score=110.12 Aligned_cols=51 Identities=29% Similarity=0.703 Sum_probs=46.9
Q ss_pred EEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC
Q ss_conf 55445888887866543027864896689845146863-42115799970469
Q gi|254780299|r 199 GLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE 250 (562)
Q Consensus 199 ~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~ 250 (562)
+++||||++|||+.+++|+|++++|+ |+|||+|||++ ++.+|+++|+|||+
T Consensus 1 a~a~TEp~~GsD~~~~~T~A~~~g~~-~~lnG~K~~it~~~~a~~~~v~art~ 52 (52)
T pfam02770 1 AFALTEPGAGSDLASLETTAERDGDG-WVLNGRKWWITNAALADLALVLARTG 52 (52)
T ss_pred CEEECCCCCCCCHHHCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEEC
T ss_conf 96986899788647598899996999-99999999576931469999999849
No 36
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.39 E-value=0.00012 Score=49.21 Aligned_cols=256 Identities=17% Similarity=0.163 Sum_probs=139.6
Q ss_pred CCCCCCEEEEECCCCCCCCCHHHCCE-------EE-EECCCCEEEECCEEEEEE-CCCCCEEEEE-EEC--CC--C-CEE
Q ss_conf 01552123554458888878665430-------27-864896689845146863-4211579997-046--99--6-179
Q gi|254780299|r 191 MQKTSVAIGLGLTEKRGGTDIAAITS-------QG-QKISDGIYCLSGHKWFLS-SPMSDAFIML-AQV--EG--R-VGC 255 (562)
Q Consensus 191 ~~k~g~~~~~~lTEp~~GSDv~~~~T-------~A-~~~gdg~y~LnG~Kwf~s-a~~ad~~lVl-Art--~~--G-ls~ 255 (562)
.+|+....+-+||-|++-=.-...+- +- ++.+|| -++.|-|-.+| ++.+|..+|+ .+. ++ . --.
T Consensus 140 vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dG-IVVrGAK~~aT~~a~tdei~V~Pt~~~~~~d~dfAv~ 218 (493)
T COG2368 140 VQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDG-IVVRGAKALATGSALTDEIFVLPTRSMQEDDKDFAVA 218 (493)
T ss_pred HHHCCCEEEECEECCCCCCCCCHHHCCCCCEEEEEEEEECCC-EEEECHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 985283452000158866778833356877269999970495-6997767772266411238984134467888864899
Q ss_pred EEEECCCCCCCC---CCEEEEEE-C-CCCC----CCC-CCEEEEEECCEEE-----EEECCCC--CHHHHHHHHHHHHHH
Q ss_conf 998775898840---34788630-4-7554----565-7727999869075-----3007776--579999997301333
Q gi|254780299|r 256 FLVPRLLEDGSP---NGLCYQRL-K-NKIG----NRS-NATVELEFSNTFG-----FLLGDLN--VSTGPVEDMKILIYL 318 (562)
Q Consensus 256 FlVp~~~pgg~~---n~v~i~r~-~-~klG----~r~-~~t~ei~f~~~~~-----~llG~~g--~G~~~i~~~l~~~Rl 318 (562)
|.+|.++||.+. +.+...+- + .... .|. ...+.+.||+|.+ .+.++.- ..+.......++.|.
T Consensus 219 FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa~~~~~ 298 (493)
T COG2368 219 FAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGFARLHRQ 298 (493)
T ss_pred EECCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 97006998628993376123214678987886555545675189962652532551562468988778888879887441
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 57999999999999999999840462224235388889999999999999999999999887201110367776556799
Q gi|254780299|r 319 DSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAP 398 (562)
Q Consensus 319 ~~a~~~~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~ 398 (562)
..+..-.+....-+-.+..-++. --+.+++.||.+|++|.+..|.+.++...++..-.+.....--. -...+.
T Consensus 299 q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~P--n~~~~n 371 (493)
T COG2368 299 QAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLP--NPAYAN 371 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEC--CHHHHH
T ss_conf 12334577999999999999986-----38411155899999999999999999999875034588885514--789975
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH----HCCCCHHHHHHHHHH
Q ss_conf 9999999999999956998852130004551889850012232----204622278999999
Q gi|254780299|r 399 ITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANS----ILLGSGNAMVLDVLN 456 (562)
Q Consensus 399 iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~----I~EGt~~I~aldv~r 456 (562)
+.|.+..+.-.++.....++.||.=.+--+ ++=+++-.+-. -.-|++|+-+.+-+|
T Consensus 372 ~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS--~~D~~n~e~~~~l~kYlrg~~~~~aeeR~k 431 (493)
T COG2368 372 VGRVYAPKAYPRIKEILQDISGGGIITLPS--AEDLFNPEIRPYLDKYLRGSANVDAEERLK 431 (493)
T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCEEECCC--HHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 687752212288999999973586563673--665219155688999982447998999999
No 37
>pfam02771 Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.
Probab=97.65 E-value=0.00011 Score=49.33 Aligned_cols=92 Identities=21% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 69846201799852136566889999999999679620337766664447637999999999830144531221356778
Q gi|254780299|r 80 NTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSA 159 (562)
Q Consensus 80 ~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~ 159 (562)
.+|+...+|..+ .+++ ++++.+.+.||.++.|+..+++.+ ...+...+...-++.++.+....+.+..+
T Consensus 19 l~p~~~~~d~~~------~~p~---~~~~~l~~~G~~~~~~P~~~GG~g--~~~~~~~~~~ee~~~~~~~~~~~~~~~~~ 87 (113)
T pfam02771 19 VAPHAAEWDEEG------EFPR---ELWRKLGELGLLGLTIPEEYGGAG--LDYLEYALVAEELARADASVGLALSVHSS 87 (113)
T ss_pred CHHHHHHHHHCC------CCCH---HHHHHHHHCCCCEEECCHHHCCCC--CCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 822499998769------9999---999999986998150763118999--99999999999998607836899997788
Q ss_pred -HHHHHH--CCHHHHHHHHHHHCCCC
Q ss_conf -999985--08788987301200100
Q gi|254780299|r 160 -SMVALM--TTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 160 -a~~~L~--~~~e~~~~~lp~l~s~~ 182 (562)
+..+|. ++++|+++|||++++++
T Consensus 88 ~~~~~l~~~gs~~qk~r~Lp~l~~Ge 113 (113)
T pfam02771 88 LVAPPILRFGTEEQKEKYLPKLASGE 113 (113)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf 67999999896999998839872899
No 38
>KOG0137 consensus
Probab=95.77 E-value=0.11 Score=29.37 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 213778999999999999999997085
Q gi|254780299|r 496 EDKGLARFLTEKIALASSAAALYRAGM 522 (562)
Q Consensus 496 ~~e~~AR~~~e~la~~~~aalL~r~a~ 522 (562)
+.....+++++-...++.-++.+.++.
T Consensus 539 ~~q~~l~rlA~~~~~iYam~a~isRAS 565 (634)
T KOG0137 539 EEQSVLQRLANVAINIYAMVAVISRAS 565 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999988875466656
No 39
>pfam11794 HpaB_N 4-hydroxyphenylacetate 3-hydroxylase N terminal. HpaB encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli. HpaB is part of a heterodimeric enzyme that also requires HpaC. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This family also includes PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis.
Probab=95.76 E-value=0.14 Score=28.58 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=47.1
Q ss_pred CCCCCCEEEEECCCCCCCCCHHH------CCEEEE-ECCCCEEEECCEEEE-EECCCCCEEEEEEEC---C--CCC-EEE
Q ss_conf 01552123554458888878665------430278-648966898451468-634211579997046---9--961-799
Q gi|254780299|r 191 MQKTSVAIGLGLTEKRGGTDIAA------ITSQGQ-KISDGIYCLSGHKWF-LSSPMSDAFIMLAQV---E--GRV-GCF 256 (562)
Q Consensus 191 ~~k~g~~~~~~lTEp~~GSDv~~------~~T~A~-~~gdg~y~LnG~Kwf-~sa~~ad~~lVlArt---~--~Gl-s~F 256 (562)
.+++.+..+-+||-|++-=.... +-.+-+ +..|| -+|+|-|-. |.++.+|-.+|+--. + +.. -.|
T Consensus 133 ~~~nDl~~~~a~~dPq~dRs~~p~q~d~d~~l~Vvee~~dG-IvVrGAK~~~T~a~~a~ei~V~p~~~~~~~d~dyAv~f 211 (265)
T pfam11794 133 AQENDLYLTHAITDPKGDRSKPPHQEDPDVYVHVVEETDDG-IVVRGAKALATGAAIADEIFVMPTRAMPEEDKDYAVAF 211 (265)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCC-EEEECHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 99709553545337987788771125887468999974896-89978677523675346189973588998886668999
Q ss_pred EEECCCCCCC
Q ss_conf 9877589884
Q gi|254780299|r 257 LVPRLLEDGS 266 (562)
Q Consensus 257 lVp~~~pgg~ 266 (562)
.||.++||.+
T Consensus 212 avP~ntpGlk 221 (265)
T pfam11794 212 AVPMDAPGLK 221 (265)
T ss_pred EEECCCCCEE
T ss_conf 9766999708
No 40
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; InterPro: IPR012687 This entry represents the monooxygenase found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein, HpaC. This family of sequences is a member of a larger subfamily of monooxygenases HpaB..
Probab=88.20 E-value=1.6 Score=21.46 Aligned_cols=218 Identities=17% Similarity=0.246 Sum_probs=116.7
Q ss_pred CEEEEECCCCCC-CCCH------HHCCE-EEEECCCCEEEECCEEEEEEC-CCCCEEEEEEEC------C-CCCEE-EEE
Q ss_conf 123554458888-8786------65430-278648966898451468634-211579997046------9-96179-998
Q gi|254780299|r 196 VAIGLGLTEKRG-GTDI------AAITS-QGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQV------E-GRVGC-FLV 258 (562)
Q Consensus 196 ~~~~~~lTEp~~-GSDv------~~~~T-~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt------~-~Gls~-FlV 258 (562)
+..+-+||.||- -|-. .-+.- .-++.++| -++.|-.-..|- +.+|=++|+=-| + +.-|+ |-+
T Consensus 149 l~lTHaL~nPQVNRak~~seqpDpyialgvVe~td~G-viVrGaRm~AT~pGiaDEiliFPSTvlk~ga~k~~YalaFai 227 (487)
T TIGR02309 149 LSLTHALTNPQVNRAKIASEQPDPYIALGVVEKTDDG-VIVRGARMLATLPGIADEILIFPSTVLKSGAEKDRYALAFAI 227 (487)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCE-EEECCHHHHCCCCCCCCEEEECCHHHHHCCCCCCCHHHHHCC
T ss_conf 0023321166522234767766785100247764860-597272873332242235566550342047887710321125
Q ss_pred ECCCCCCC---CCCEEEEEE--CCCCCCCCC-CEEEEEECCEE-----EEEECCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77589884---034788630--475545657-72799986907-----5300777---6579999997301333579999
Q gi|254780299|r 259 PRLLEDGS---PNGLCYQRL--KNKIGNRSN-ATVELEFSNTF-----GFLLGDL---NVSTGPVEDMKILIYLDSAIMS 324 (562)
Q Consensus 259 p~~~pgg~---~n~v~i~r~--~~klG~r~~-~t~ei~f~~~~-----~~llG~~---g~G~~~i~~~l~~~Rl~~a~~~ 324 (562)
|..+||.. |..+..++- -+-+|.|.- .-|.|.||||- ..+|+.. |+.+.. ...+++.--.+-+--
T Consensus 228 ptnTPGL~f~cRE~~d~G~~pfDhPlsSrfeE~Da~ViFDdVLVPWeRiFiL~dvElcN~AyA~-T~Av~HMahQVvalk 306 (487)
T TIGR02309 228 PTNTPGLRFLCRESLDVGKDPFDHPLSSRFEEQDALVIFDDVLVPWERIFILEDVELCNKAYAE-TDAVVHMAHQVVALK 306 (487)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCCEEEEECCHHHHHHHHHH-CCHHHHHHHHHHHHH
T ss_conf 4678886401015533685787788544022364178763733771005530211334101222-123655677777666
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHH
Q ss_conf 999999999999998404622242353888899999999999999999999998872011---10367776556799999
Q gi|254780299|r 325 VSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAK---SRSEEAAYARIMAPITK 401 (562)
Q Consensus 325 ~G~ar~al~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~---~~~~~~a~arl~t~iaK 401 (562)
++=.+.-|-.+..-+. +--+.-||.||.+.+|+-+.+|.++++.+++-....... -.++-.+ .-.|.
T Consensus 307 iAKtEafLGva~~~~~-----~IG~dgfqHV~~KiaEIi~~LE~Mka~~~~Aee~Ak~n~yG~mtPdr~a-----LdaAR 376 (487)
T TIGR02309 307 IAKTEAFLGVALKLVD-----SIGADGFQHVQDKIAEIIVALEAMKAFLVKAEEEAKENRYGLMTPDREA-----LDAAR 376 (487)
T ss_pred HHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH-----HHHHH
T ss_conf 7778889999999985-----4078840336778999999999889999999862674663455774434-----55554
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999956998852130004
Q gi|254780299|r 402 YWCCKMAPAVIAEAMECIGGSGYIE 426 (562)
Q Consensus 402 ~~~~e~a~~v~~~Aiqi~GG~Gy~e 426 (562)
-|=...-.+ ..|-+|++|..|.+.
T Consensus 377 N~yPr~ypR-l~EiL~~lGASGli~ 400 (487)
T TIGR02309 377 NYYPRVYPR-LAEILRLLGASGLIT 400 (487)
T ss_pred HHCCCCCHH-HHHHHHHHCCCCCCC
T ss_conf 100001200-899999836245022
No 41
>pfam03241 HpaB 4-hydroxyphenylacetate 3-hydroxylase C terminal. HpaB encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli. HpaB is part of a heterodimeric enzyme that also requires HpaC. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This family also includes PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis.
Probab=88.03 E-value=1.7 Score=21.39 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=56.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 35388889999999999999999999999887201110367776556799999999999999995699885213000455
Q gi|254780299|r 349 LIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEER 428 (562)
Q Consensus 349 L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ee~ 428 (562)
+.++|.||.+|++|....|..+++...+...-...+...- .--+..+-.+|.+.++.-.+++....++.||. .+. .
T Consensus 44 ~~~~~~Vqekl~Eli~~~e~~~a~~~aa~~~a~~~~~G~~--~P~~~~~~a~r~~~~~~y~~~~~il~~l~gg~-li~-l 119 (205)
T pfam03241 44 VDKFPHVQEKLGELIALRELFRALLIAAEAEAEKDPNGAY--LPNLLLLNAGRVLAPELYPRIVEILRDLGGGG-LIT-L 119 (205)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE--EECHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEE-C
T ss_conf 6645169999999999999999999999974965999855--40788999999998876999999999981779-335-7
Q ss_pred HHHHHHHCC
Q ss_conf 188985001
Q gi|254780299|r 429 SIARHYRES 437 (562)
Q Consensus 429 ~leRl~RDA 437 (562)
|-+.=|.+.
T Consensus 120 Ps~~Df~np 128 (205)
T pfam03241 120 PSEADFANP 128 (205)
T ss_pred CCHHHHCCH
T ss_conf 897884694
No 42
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain; InterPro: IPR005972 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=73.42 E-value=2.1 Score=20.66 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=42.2
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 202457887621101167888589980016788---9999972042110789999998501899999986343698462
Q gi|254780299|r 10 LAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSL---LVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLH 85 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~nq~~~~~g~n~~~~D~~---l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~ 85 (562)
++|||+++.=.+.++. |...+|+|=.+.. |+++++.| .++++.+-.|.|..++........+++.|+|.
T Consensus 267 RSmNYi~~~MEekYGi----PW~e~NFfGp~~i~~sLR~iA~~F---Dd~~i~~~~E~VIA~y~~~~~~~i~~yr~rl~ 338 (521)
T TIGR01282 267 RSMNYISRHMEEKYGI----PWMEYNFFGPTKIAESLRKIAEFF---DDPEIKEKAEEVIAKYQPQVDAVIAKYRPRLE 338 (521)
T ss_pred CCHHHHHHHHHHHCCC----CCEEEECCCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4366887787865089----836873348468999999998546---96678888889999888999999999987424
No 43
>KOG0450 consensus
Probab=70.08 E-value=6.3 Score=17.51 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96878766320245788762110116788858998001678899999720421--1078999999850189999998634
Q gi|254780299|r 1 MTLREIYRRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANFPSV--VHKELELLGEYVLSCTAQELARMAN 78 (562)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~nq~~~~~g~n~~~~D~~l~~~~~~~~~~--~~~~l~~~g~~~~~~~~~~~~~~a~ 78 (562)
||||||-+||.+.+-......-+-.| .+.-.||. .+++-...+-. .+..-.-|..++=| ..=...++.
T Consensus 201 ltLreIl~rlE~~YC~~igvEfmhI~---~~eqcnWi-----r~k~EtP~~~q~s~e~k~~il~RL~~s--t~FE~FLa~ 270 (1017)
T KOG0450 201 LTLREILRRLEKAYCGSIGVEFMHIN---DLEQCNWI-----RQKFETPGPMQYSHEQKRVILDRLTRS--TRFEEFLAT 270 (1017)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEC---CHHHHHHH-----HHHCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 52999999999876324305788608---57772799-----986369985115778899999998876--479999865
Q ss_pred HCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3698462017998521365668899999999996796203377666
Q gi|254780299|r 79 YNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIWDRSF 124 (562)
Q Consensus 79 ~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~~~~~ 124 (562)
+. |.-+.|.-.|.. ..-|+-|++.+.+.+.|+-++..--++
T Consensus 271 Kw-~seKRFGLEGcE----~lIP~mK~iiDrS~elGVe~iviGMpH 311 (1017)
T KOG0450 271 KW-PSEKRFGLEGCE----VLIPAMKTIIDRSSELGVESIVIGMPH 311 (1017)
T ss_pred HC-CCCCCCCCCCHH----HHHHHHHHHHHHHHHCCCHHEEECCCC
T ss_conf 08-852013655325----450678988623544180215733776
No 44
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=63.92 E-value=5.9 Score=17.71 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=13.7
Q ss_pred HHHHHCCCCCCCC-CHHHHHHHCCHHHHHCC
Q ss_conf 9988521300045-51889850012232204
Q gi|254780299|r 415 AMECIGGSGYIEE-RSIARHYRESPANSILL 444 (562)
Q Consensus 415 Aiqi~GG~Gy~ee-~~leRl~RDA~v~~I~E 444 (562)
--+.+=|.|.-+. -.+.++..---+..+-|
T Consensus 516 ~~~~L~~~e~~~~~m~l~~~v~~ltLrd~lE 546 (677)
T TIGR01074 516 LKEMLEGDEEDGPEMNLEQVVQRLTLRDMLE 546 (677)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9998417888852346899999998754641
No 45
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=61.78 E-value=2.3 Score=20.44 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=7.8
Q ss_pred HHHC-CHHHHHHHHHHHC
Q ss_conf 9850-8788987301200
Q gi|254780299|r 163 ALMT-TPRVHKDWAPKIF 179 (562)
Q Consensus 163 ~L~~-~~e~~~~~lp~l~ 179 (562)
+|+. +-.++++.||+++
T Consensus 365 ALE~Wp~~Lf~~LLPRhl 382 (822)
T TIGR02093 365 ALEKWPVDLFEKLLPRHL 382 (822)
T ss_pred HHCCCCHHHHHHHHHHHH
T ss_conf 531289779987636699
No 46
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=61.63 E-value=4.9 Score=18.27 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2789999998312603799999999964254517789999987305------4221377899999999999999999708
Q gi|254780299|r 448 NAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISL------CKEDKGLARFLTEKIALASSAAALYRAG 521 (562)
Q Consensus 448 ~I~aldv~r~l~r~~~~~~~l~~~l~~~~g~~~~~~~~~l~~~~~~------~~~~e~~AR~~~e~la~~~~aalL~r~a 521 (562)
.-|+|-++|+|.=+|+.+ |++|...++.|.+-.-.+.+-..+.. -.-.-.+|.++.++.|.-+.|. |++++
T Consensus 149 QQQRLCIARalA~ePeVl--LlDEPTSALDPIaT~~IEeLi~eLk~~YTivIVTHnMqQA~RiSD~tAFF~~G~-LvE~G 225 (248)
T TIGR00972 149 QQQRLCIARALAVEPEVL--LLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGE-LVEYG 225 (248)
T ss_pred HHHHHHHHHHHHCCCCEE--CCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCE-EEEEC
T ss_conf 889999998752488521--057888757877899999999987652979988177567899999998865672-57407
Q ss_pred CH
Q ss_conf 57
Q gi|254780299|r 522 MN 523 (562)
Q Consensus 522 ~~ 523 (562)
+.
T Consensus 226 ~T 227 (248)
T TIGR00972 226 DT 227 (248)
T ss_pred CH
T ss_conf 81
No 47
>pfam11859 DUF3379 Protein of unknown function (DUF3379). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=60.73 E-value=9.7 Score=16.25 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=41.9
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHH
Q ss_conf 2115799970469961799987758988403478863047554565772799986907530077765799999973
Q gi|254780299|r 238 PMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMK 313 (562)
Q Consensus 238 ~~ad~~lVlArt~~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~~llG~~g~G~~~i~~~l 313 (562)
+.-.+|+|+---.|.+++|+||...+- ....--++-|+.+ --+...++..-|||+.|.-+..+..-+
T Consensus 161 g~~sLHlV~qg~~GkVTlFivP~~~~~------~~~~~F~d~~~~G---~~~~~~~a~~ilVge~~~dl~~v~~~i 227 (232)
T pfam11859 161 GVKSLHLVFQGEQGKVTLFIVPIESRM------VLEEAFADNGYEG---IIFPTGDASLILVGEKGEDLDKVKKKI 227 (232)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCC------CHHHHHCCCCCEE---EEEECCCEEEEEECCCCCCHHHHHHHH
T ss_conf 974368999648887899992175421------1566523677427---778638747999806620579999998
No 48
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=59.41 E-value=5.9 Score=17.71 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHCCCCCCCHHHC
Q ss_conf 9999999984046222423538
Q gi|254780299|r 331 SLAEAIHYARRRHVSGGILIDQ 352 (562)
Q Consensus 331 al~~A~~yA~~R~~fG~~L~~~ 352 (562)
+|-+-++-...-..-|+.|.++
T Consensus 290 aFl~l~~~ss~~~v~G~~L~~w 311 (453)
T TIGR02040 290 AFLELVEVSSKEAVRGRTLDRW 311 (453)
T ss_pred HHHHHHHHCCHHHHCCCCHHHH
T ss_conf 9998987177545313323554
No 49
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain; InterPro: IPR010143 This entry represents all three varieties (Fe-Fe, Mo-Fe and V-Fe) of the component I alpha chain of nitrogenase. Nitrogenase (1.18.6.1 from EC) is the enzyme system responsible for biological nitrogen fixation. Nitrogenase is an oligomeric complex which consists of two components: component 2 is an homodimer of an iron-sulphur protein, while component 1 which contains the active site for the reduction of nitrogen to ammonia exists in three different forms: the molybdenum-iron containing protein (MoFe) is a hetero-tetramer consisting of two pairs of alpha (nifD) and beta (nifK) subunits; the vanadium-iron containing protein (VFe) is a hexamer of two pairs each of alpha (vnfD), beta (vnfK), and delta (vnfG) subunits; the third form seems to only contain iron and is a hexamer composed of alpha (anfD), beta (anfK), and delta (anfG) subunits. The alpha and beta chains of the three types of component 1 are evolutionary related and they are also related to proteins nifE and nifN, which are most probably involved in the iron-molybdenum cofactor biosynthesis .; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=58.43 E-value=3.5 Score=19.25 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 63202457887621101167888589980016788999997204211078999999850189999998634369846201
Q gi|254780299|r 8 RRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANFPSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAY 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~nq~~~~~g~n~~~~D~~l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~ 87 (562)
=.++|||.++.-.+.-+. |..+.|+|=.+.....+-+-..-+-++++.+=++.+..+++.+|...-+.+.|+|+
T Consensus 257 C~RS~nYIa~~le~rYGI----P~~~~dffG~~~~~e~LR~I~~~Fg~~eI~~r~EevIae~~a~w~p~ld~yKerL~-- 330 (510)
T TIGR01862 257 CARSANYIANELEERYGI----PWLKIDFFGFEYIAESLRAIAAFFGDSEIEKRAEEVIAEEIAKWKPELDYYKERLQ-- 330 (510)
T ss_pred ECCHHHHHHHHHHHCCCC----CEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC--
T ss_conf 014057999985530787----53775465703789989999964588542268888778744210412454113114--
Q ss_pred CCCCCCCCEEEC--CHHHHHHHHHHHHCCC
Q ss_conf 799852136566--8899999999996796
Q gi|254780299|r 88 GPGGERWDKVEF--HPAWHALLRRSIHDGL 115 (562)
Q Consensus 88 d~~G~r~d~v~~--~p~~~~l~~~~~~~Gl 115 (562)
|+|+ .|.. +-.||-..-..-+.|+
T Consensus 331 ---GK~v-~ly~GG~r~wH~~~~~~~~lG~ 356 (510)
T TIGR01862 331 ---GKRV-CLYVGGSRLWHWIKSLEEDLGV 356 (510)
T ss_pred ---CCEE-EEECCCCCHHHHHHHHHHHCCC
T ss_conf ---9889-9975888001111257776394
No 50
>pfam12186 AcylCoA_dehyd_C Acyl-CoA dehydrogenase C terminal. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam02770, pfam00441, pfam02771. There is a conserved ARRL sequence motif. The C terminal domain is an alpha helical domain. The flavin ring of Acyl-CoA dehydrogenase is buried in the crevice between the two alpha helical domains and the beta-sheet domain of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction of a neighbouring subunit, composed of two C terminal domains.
Probab=57.34 E-value=11 Score=15.88 Aligned_cols=47 Identities=23% Similarity=0.132 Sum_probs=33.7
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHH
Q ss_conf 73054221377899999999999999999708579------99999996400256
Q gi|254780299|r 490 SISLCKEDKGLARFLTEKIALASSAAALYRAGMND------IADVFLENRFLDNC 538 (562)
Q Consensus 490 ~~~~~~~~e~~AR~~~e~la~~~~aalL~r~a~~~------va~af~~~Rl~~~~ 538 (562)
...+.+-....||+++|..+.+..+-||++.+..+ .|+.|+ |++..-
T Consensus 44 e~~nqe~~DF~ARRL~eMaa~iims~LLl~dA~kapelF~kSA~VY~--~~ae~e 96 (114)
T pfam12186 44 EAKDQELLDFQARRLVEMAAHIIMGHLLLQDANKDEDLFRKSAEVYL--RYAEAE 96 (114)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH--HHHHHH
T ss_conf 74175999999999999999999999999987458888988699999--998998
No 51
>COG5566 Uncharacterized conserved protein [Function unknown]
Probab=39.59 E-value=21 Score=14.06 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--CHHHHHHHCCHHHHHCCCCHHH
Q ss_conf 999999569988521300045--5188985001223220462227
Q gi|254780299|r 407 MAPAVIAEAMECIGGSGYIEE--RSIARHYRESPANSILLGSGNA 449 (562)
Q Consensus 407 ~a~~v~~~Aiqi~GG~Gy~ee--~~leRl~RDA~v~~I~EGt~~I 449 (562)
.+..++-.-|+-+||.+|--- -.+-+-.||..+.+=|+|.|-+
T Consensus 62 ~alk~v~~l~~y~GGrsfYlP~G~s~r~t~Rn~~ifsd~dG~n~~ 106 (137)
T COG5566 62 LALKLVFKLMEYGGGRSFYLPKGDSIRATLRNKQIFSDFDGSNYV 106 (137)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 089999999997398158831756899999989999760776389
No 52
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=39.24 E-value=13 Score=15.41 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHHHHHCC
Q ss_conf 13000455188985001
Q gi|254780299|r 421 GSGYIEERSIARHYRES 437 (562)
Q Consensus 421 G~Gy~ee~~leRl~RDA 437 (562)
|.|.+-++++.|+|||.
T Consensus 131 G~GiVPe~~l~R~fRD~ 147 (175)
T COG2087 131 GLGIVPEYRLGRLFRDI 147 (175)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 47768583666799998
No 53
>TIGR00770 Dcu transporter, anaerobic C4-dicarboxylate uptake (Dcu) family; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm . The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species , , , and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively . The Escherichia coli DcuA and DcuB proteins have very different expression patterns . DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane.
Probab=38.59 E-value=21 Score=13.96 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=5.1
Q ss_pred HHHHHHCCCC
Q ss_conf 9999720421
Q gi|254780299|r 44 VALIANFPSV 53 (562)
Q Consensus 44 ~~~~~~~~~~ 53 (562)
+++||+.|..
T Consensus 74 EKlLRrnPK~ 83 (447)
T TIGR00770 74 EKLLRRNPKY 83 (447)
T ss_pred HHHHCCCCCE
T ss_conf 8974169973
No 54
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=38.46 E-value=9 Score=16.49 Aligned_cols=28 Identities=11% Similarity=0.064 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHCCHH---HHHCCCCHHHH
Q ss_conf 00045518898500122---32204622278
Q gi|254780299|r 423 GYIEERSIARHYRESPA---NSILLGSGNAM 450 (562)
Q Consensus 423 Gy~ee~~leRl~RDA~v---~~I~EGt~~I~ 450 (562)
|++.+..+..+|+.|-| -+.+||-+.+.
T Consensus 256 G~v~~~~l~~~~~~aDvfv~PS~~Egfglv~ 286 (398)
T cd03796 256 GAVPHERVRDVLVQGHIFLNTSLTEAFCIAI 286 (398)
T ss_pred CCCCHHHHHHHHHHHHEEECCCCCCCCCHHH
T ss_conf 8885677788887744212765424666799
No 55
>pfam08877 MepB MepB protein. MepB is a functionally uncharacterized protein in the mepRAB gene cluster of Staphylococcus aureus.
Probab=37.41 E-value=21 Score=14.00 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred EEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 86342115799970469961799987758988403478863047554565772799
Q gi|254780299|r 234 FLSSPMSDAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVEL 289 (562)
Q Consensus 234 f~sa~~ad~~lVlArt~~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei 289 (562)
|......|.++|....++..+.|+.|+..- ....=++...-+.|||.|-=|.-..
T Consensus 49 f~~~d~~d~lvI~v~d~~~~G~FiFpk~~L-~~kgIlss~~~~GK~a~RVYPpW~~ 103 (123)
T pfam08877 49 FDYDDAPDLLIIVVIDDNRRGQFIFPKEVL-IEKGILSSDGSKGKMAFRVYPSWCT 103 (123)
T ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEHHHH-HHCCCEECCCCCCEEEEEECCCCCC
T ss_conf 743347897999997289067799039999-7679510489887048887898657
No 56
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=35.01 E-value=24 Score=13.59 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=9.1
Q ss_pred CCCHHHCCCHHHHHHHHHH
Q ss_conf 2423538888999999999
Q gi|254780299|r 346 GGILIDQPVMKRAIADIAL 364 (562)
Q Consensus 346 G~~L~~~p~v~~~LAdm~~ 364 (562)
||.|.+.|-.|++|.|=..
T Consensus 191 gkeL~~Dp~yq~RL~~~~~ 209 (436)
T COG2704 191 GKELDDDPEYQKRLSEGLI 209 (436)
T ss_pred CCCCCCCHHHHHHHHCCCC
T ss_conf 2534579889998627653
No 57
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP). UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=34.66 E-value=25 Score=13.55 Aligned_cols=11 Identities=0% Similarity=0.075 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 35677899998
Q gi|254780299|r 154 PSVTSASMVAL 164 (562)
Q Consensus 154 ~~mt~~a~~~L 164 (562)
+.|.+|...++
T Consensus 84 Lgm~dG~~~~~ 94 (213)
T TIGR01091 84 LGMVDGVLKLI 94 (213)
T ss_pred HHHHHHHHHHC
T ss_conf 68999999848
No 58
>pfam05428 CRF-BP Corticotropin-releasing factor binding protein (CRF-BP). This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development.
Probab=33.89 E-value=14 Score=15.20 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=10.2
Q ss_pred CCEEEECCEEEEEE
Q ss_conf 96689845146863
Q gi|254780299|r 223 DGIYCLSGHKWFLS 236 (562)
Q Consensus 223 dg~y~LnG~Kwf~s 236 (562)
|| |+|||+|.-.+
T Consensus 114 DG-W~LkGEkFPs~ 126 (311)
T pfam05428 114 DG-WELKGEKFPSS 126 (311)
T ss_pred EE-EEECCCCCCCC
T ss_conf 61-08846688484
No 59
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=31.72 E-value=17 Score=14.66 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHCCCCCCCCCH-HHHHHHCCHHHHHCCCCH
Q ss_conf 6998852130004551-889850012232204622
Q gi|254780299|r 414 EAMECIGGSGYIEERS-IARHYRESPANSILLGSG 447 (562)
Q Consensus 414 ~Aiqi~GG~Gy~ee~~-leRl~RDA~v~~I~EGt~ 447 (562)
.+.-+|+|+|++.|++ +++...|+ .-+|=|++
T Consensus 73 ~~~aihpGyGflsEn~~fa~~~~~~--Gi~fiGPs 105 (109)
T pfam00289 73 GADAIHPGYGFLSENAEFAEACEKA--GITFIGPS 105 (109)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHC--CCEEECCC
T ss_conf 8896877976233599999999988--89899958
No 60
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=31.50 E-value=11 Score=15.80 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=34.8
Q ss_pred EEECCCCEEEECCEEEEEECCCCCEEEEEEECC-CCCEEEEEECCCCCCC
Q ss_conf 786489668984514686342115799970469-9617999877589884
Q gi|254780299|r 218 GQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVE-GRVGCFLVPRLLEDGS 266 (562)
Q Consensus 218 A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~-~Gls~FlVp~~~pgg~ 266 (562)
+++..||+|++.|.=|...+++ .|=|+-|.| .|-|=|+|--...||+
T Consensus 132 ~V~~~DGeh~l~g~GW~~dGGD--Lwevl~~LDS~GCsRfVVTDv~KDG~ 179 (246)
T TIGR01919 132 DVRLIDGEHRLRGRGWESDGGD--LWEVLERLDSEGCSRFVVTDVAKDGT 179 (246)
T ss_pred EEEEECCCEEEECCCCCCCCCC--HHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 7898738566604675578862--89999874348854037850123786
No 61
>TIGR01960 ndhF3_CO2 NAD(P)H dehydrogenase, subunit NdhF3 family; InterPro: IPR010217 This family represents NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighbouring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=31.27 E-value=17 Score=14.56 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=6.7
Q ss_pred HCCCCCCCCCHHHHHH
Q ss_conf 5213000455188985
Q gi|254780299|r 419 IGGSGYIEERSIARHY 434 (562)
Q Consensus 419 ~GG~Gy~ee~~leRl~ 434 (562)
.|+.|.+-=.|+.-++
T Consensus 384 VGsagLia~~PLG~FW 399 (613)
T TIGR01960 384 VGSAGLIALPPLGSFW 399 (613)
T ss_pred HHHHHHHHHCCHHHHH
T ss_conf 9967998745312589
No 62
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=31.18 E-value=19 Score=14.25 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCHHHH
Q ss_conf 999999850189999998634369846201799852136566889999999999679620337--766664447637999
Q gi|254780299|r 58 LELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW--DRSFEPVVRKQAHKI 135 (562)
Q Consensus 58 l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r~d~v~~~p~~~~l~~~~~~~Gl~~~~~--~~~~~~~~~~~~~~~ 135 (562)
+.+.=-++..+-+.|....--.--|.....|.++ ---|+|....+.+..+|+....- .+..++ -|.+-+-
T Consensus 56 FNE~HILAi~QAv~~~R~~~G~TGP~y~G~DtHa------LSEPA~~s~LEVLaAN~v~~~v~tat~~~ry--TPTPavS 127 (553)
T TIGR01132 56 FNEAHILAITQAVVDYRAAQGITGPLYIGKDTHA------LSEPAFVSALEVLAANQVEVIVQTATENNRY--TPTPAVS 127 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC------CCHHHHHHHHHHHHHCCEEEEEEECCCCCCC--CCCHHHH
T ss_conf 6647899999999999972782035111677542------5406899999998746725888402247888--8964665
Q ss_pred HHHHHHHH
Q ss_conf 99999983
Q gi|254780299|r 136 RAARLYLM 143 (562)
Q Consensus 136 ~~a~~~l~ 143 (562)
+++..|--
T Consensus 128 ~AILtyN~ 135 (553)
T TIGR01132 128 HAILTYNK 135 (553)
T ss_pred HHHHHHCC
T ss_conf 78874126
No 63
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=29.80 E-value=29 Score=13.03 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCCCCCCCCHHHCCEEEEECCCCEEEECCEE-EEEECCCCCEEEEEEECC
Q ss_conf 4588888786654302786489668984514-686342115799970469
Q gi|254780299|r 202 LTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE 250 (562)
Q Consensus 202 lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~K-wf~sa~~ad~~lVlArt~ 250 (562)
=||-..|-.+.-=...-+-|+- .|+++-.| |--.++.-+-+-||=|..
T Consensus 309 wT~g~~Ge~i~~YsAfneLdEA-rFvv~~~~~w~~~GG~l~e~AvLYRsN 357 (741)
T TIGR01075 309 WTDGEVGEPISLYSAFNELDEA-RFVVSRIKAWQREGGALDEIAVLYRSN 357 (741)
T ss_pred ECCCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 1345678702576513413789-999999999986589641365663255
No 64
>PRK13795 hypothetical protein; Provisional
Probab=28.69 E-value=31 Score=12.90 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=10.5
Q ss_pred CCCCCCCHHHCCCHHHHHHH
Q ss_conf 46222423538888999999
Q gi|254780299|r 342 RHVSGGILIDQPVMKRAIAD 361 (562)
Q Consensus 342 R~~fG~~L~~~p~v~~~LAd 361 (562)
...|...=.+||-...-.-+
T Consensus 273 ~~~f~dTglEfPeT~e~v~~ 292 (630)
T PRK13795 273 KAFFNNTGLEFPETVENVKE 292 (630)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89995077676469999999
No 65
>KOG2675 consensus
Probab=27.23 E-value=33 Score=12.73 Aligned_cols=50 Identities=14% Similarity=0.332 Sum_probs=28.1
Q ss_pred CCCCHHHCCEEEEECCCCEEEECCEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 8878665430278648966898451468634211579997046996179998
Q gi|254780299|r 207 GGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGCFLV 258 (562)
Q Consensus 207 ~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa~~ad~~lVlArt~~Gls~FlV 258 (562)
++|-+.- .+..++.+. .-.|-|.|||+-+-.-+--+|+--++..-|.|+-
T Consensus 310 ~~~~Psk-~~~~~k~pp-~~ELeGkkW~VEnq~~~~~~Vi~~~e~kqsvyIy 359 (480)
T KOG2675 310 GSSSPSK-SAAPKKKPP-VKELEGKKWRVENQENNKNLVIDDAELKQSVYIY 359 (480)
T ss_pred CCCCCCC-CCCCCCCCC-EEEECCCEEEEEECCCCCCEEEEECCCCCEEEEE
T ss_conf 8888765-556777997-0363164568860037765166642454248998
No 66
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=26.89 E-value=30 Score=12.98 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=13.4
Q ss_pred CCCCCCCCHHHHHHHCC
Q ss_conf 13000455188985001
Q gi|254780299|r 421 GSGYIEERSIARHYRES 437 (562)
Q Consensus 421 G~Gy~ee~~leRl~RDA 437 (562)
|.|++-++++.|.|||.
T Consensus 127 G~Givp~~~~~R~frd~ 143 (170)
T PRK05800 127 GMGIVPEYRLGRRFRDI 143 (170)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 77788998799999999
No 67
>KOG1416 consensus
Probab=25.86 E-value=34 Score=12.57 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 400256554511434468
Q gi|254780299|r 533 RFLDNCHSTHCMLHGRFN 550 (562)
Q Consensus 533 Rl~~~~~~~~g~l~a~~d 550 (562)
+|-..|.+.|-.||.|.-
T Consensus 410 ~ite~wlR~YQVLP~RtH 427 (475)
T KOG1416 410 SITETWLRPYQVLPDRTH 427 (475)
T ss_pred EECHHHCCCEEECCCCCC
T ss_conf 502423531010577788
No 68
>KOG1321 consensus
Probab=25.68 E-value=35 Score=12.55 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=16.2
Q ss_pred CCCCCCHHHCCEEEEECCCCEEEECCEEEEE
Q ss_conf 8888786654302786489668984514686
Q gi|254780299|r 205 KRGGTDIAAITSQGQKISDGIYCLSGHKWFL 235 (562)
Q Consensus 205 p~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~ 235 (562)
...||.+..+.+.-+.+ | ...+-||-+
T Consensus 169 sTsGSSln~l~r~~r~~--~--~~~~~~wsi 195 (395)
T KOG1321 169 STSGSSLNELWRQFRED--G--YERDIKWSI 195 (395)
T ss_pred ECCCCCHHHHHHHHHHC--C--CCCCCCEEE
T ss_conf 15764299999999844--7--656881586
No 69
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.66 E-value=9.4 Score=16.34 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999996
Q gi|254780299|r 101 PAWHALLRRSIH 112 (562)
Q Consensus 101 p~~~~l~~~~~~ 112 (562)
|+|+++-+...+
T Consensus 81 ~~~~~l~~avh~ 92 (337)
T PRK13523 81 EGLHKLVTFIHD 92 (337)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999975
No 70
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=25.05 E-value=11 Score=15.87 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=14.4
Q ss_pred CCEEECCHHHHHHHHHHHHCCCC
Q ss_conf 13656688999999999967962
Q gi|254780299|r 94 WDKVEFHPAWHALLRRSIHDGLH 116 (562)
Q Consensus 94 ~d~v~~~p~~~~l~~~~~~~Gl~ 116 (562)
++.-+.-|+|+++-+...++|-.
T Consensus 70 i~~d~~i~~~k~l~~~vH~~G~~ 92 (353)
T cd02930 70 LNSPRQAAGHRLITDAVHAEGGK 92 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 27999999999999999976997
No 71
>PHA00728 hypothetical protein
Probab=25.00 E-value=30 Score=13.00 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCC
Q ss_conf 8999999850189999998634369846201799852
Q gi|254780299|r 57 ELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGER 93 (562)
Q Consensus 57 ~l~~~g~~~~~~~~~~~~~~a~~~~P~l~~~d~~G~r 93 (562)
++.++-.+.|.+.+.|++..|++-..+|+.-...|+|
T Consensus 79 EfarLP~YFgEePv~ELae~A~kLKHYLVSKgGrGRR 115 (153)
T PHA00728 79 EFARLPAYFGEEPVVELAQFADKLKHYLVSKGGRGRR 115 (153)
T ss_pred HHHHCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 8852455407751789999999988886345887416
No 72
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=24.60 E-value=10 Score=16.11 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 6889999999999679
Q gi|254780299|r 99 FHPAWHALLRRSIHDG 114 (562)
Q Consensus 99 ~~p~~~~l~~~~~~~G 114 (562)
+-|+|+++-+...++|
T Consensus 81 ~i~~~k~l~d~vH~~G 96 (370)
T cd02929 81 DIRNLAAMTDAVHKHG 96 (370)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999999669
No 73
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.42 E-value=11 Score=15.95 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 889999999999679
Q gi|254780299|r 100 HPAWHALLRRSIHDG 114 (562)
Q Consensus 100 ~p~~~~l~~~~~~~G 114 (562)
-|+|+++-+...++|
T Consensus 81 i~~~k~l~d~vh~~g 95 (338)
T cd04733 81 LEAFREWAAAAKANG 95 (338)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998569
No 74
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.04 E-value=11 Score=15.86 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 6889999999999679
Q gi|254780299|r 99 FHPAWHALLRRSIHDG 114 (562)
Q Consensus 99 ~~p~~~~l~~~~~~~G 114 (562)
+-|+|+++-+...++|
T Consensus 76 ~i~~~k~l~~avH~~G 91 (353)
T cd04735 76 DIPGLRKLAQAIKSKG 91 (353)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998579
No 75
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=23.80 E-value=32 Score=12.80 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 766320245788762110116788858998001678899999720
Q gi|254780299|r 6 IYRRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANF 50 (562)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~nq~~~~~g~n~~~~D~~l~~~~~~~ 50 (562)
=++.|..-++||.+ ||.-..-|+..|+.|...++++.-+
T Consensus 20 ~~~~L~L~EiHRF~------N~l~~~dg~~~WDid~l~~~I~~GL 58 (460)
T TIGR02627 20 ETQKLTLEEIHRFK------NQLVSQDGHECWDIDALEQEILIGL 58 (460)
T ss_pred CCCCEEEEEEEEEC------CEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 33113466675421------6016568875342999999999999
No 76
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.77 E-value=14 Score=15.27 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=9.3
Q ss_pred ECCHHHHHHHHHHHHCCC
Q ss_conf 668899999999996796
Q gi|254780299|r 98 EFHPAWHALLRRSIHDGL 115 (562)
Q Consensus 98 ~~~p~~~~l~~~~~~~Gl 115 (562)
++-|+|+++-+...++|-
T Consensus 75 ~~i~~~r~la~avH~~G~ 92 (361)
T cd04747 75 DALAGWKKVVDEVHAAGG 92 (361)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999997699
No 77
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.01 E-value=12 Score=15.62 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=12.4
Q ss_pred CCCCCCHHHCCCHHHHHHHH
Q ss_conf 62224235388889999999
Q gi|254780299|r 343 HVSGGILIDQPVMKRAIADI 362 (562)
Q Consensus 343 ~~fG~~L~~~p~v~~~LAdm 362 (562)
..+|++++..|..-.++.+-
T Consensus 315 Va~gR~~ladP~~v~k~~~g 334 (363)
T COG1902 315 VAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred EEECHHHHCCCCHHHHHHCC
T ss_conf 87263665092089999737
No 78
>KOG3581 consensus
Probab=21.49 E-value=26 Score=13.37 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCCH--HHCCEEEEECCCCEEEECCEEEEEE
Q ss_conf 8786--6543027864896689845146863
Q gi|254780299|r 208 GTDI--AAITSQGQKISDGIYCLSGHKWFLS 236 (562)
Q Consensus 208 GSDv--~~~~T~A~~~gdg~y~LnG~Kwf~s 236 (562)
||-. +++..+--|++-|-| .|-.|.|.-
T Consensus 196 gdr~L~aa~a~r~WP~gRGI~-hN~~KtFLv 225 (363)
T KOG3581 196 GDRLLQAAGAARDWPDGRGIF-HNDNKTFLV 225 (363)
T ss_pred CCHHHHHCCCCCCCCCCCCEE-ECCCCEEEE
T ss_conf 688887563201498666324-558853899
No 79
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.37 E-value=42 Score=12.00 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=22.8
Q ss_pred EEEECCCCCEEEEEEECCCCCEEEEEECC
Q ss_conf 68634211579997046996179998775
Q gi|254780299|r 233 WFLSSPMSDAFIMLAQVEGRVGCFLVPRL 261 (562)
Q Consensus 233 wf~sa~~ad~~lVlArt~~Gls~FlVp~~ 261 (562)
-|.+.+.||..+++.+.+.--++|..|+.
T Consensus 69 Pfs~~~~a~~LlI~V~de~~~G~F~Fpre 97 (145)
T COG4815 69 PFSDDGMAAGLLIFVIDEVLRGVFRFPRE 97 (145)
T ss_pred CCCCCCCCCEEEEEEECCCCCEEEECCHH
T ss_conf 98821003705999981652316871488
No 80
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=20.77 E-value=13 Score=15.47 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8999999999967
Q gi|254780299|r 101 PAWHALLRRSIHD 113 (562)
Q Consensus 101 p~~~~l~~~~~~~ 113 (562)
|+|+++-+...++
T Consensus 77 ~~~~~l~~~vh~~ 89 (338)
T cd02933 77 EGWKKVTDAVHAK 89 (338)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999855
No 81
>COG2169 Ada Adenosine deaminase [Nucleotide transport and metabolism]
Probab=20.72 E-value=43 Score=11.92 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=47.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999831260379999999996425451778999998730542213778999999999999999997085799999999
Q gi|254780299|r 452 LDVLNLLEKGTNLFEQLFSTLEQDLGSSGKKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLE 531 (562)
Q Consensus 452 ldv~r~l~r~~~~~~~l~~~l~~~~g~~~~~~~~~l~~~~~~~~~~e~~AR~~~e~la~~~~aalL~r~a~~~va~af~~ 531 (562)
..+.+.+...+ -..+++++...++-.........+....+.+..-+.++++. .+..++.++. .|-++-+.
T Consensus 85 ~~a~~~ie~~~--~~~~le~la~~lg~sp~~~~R~FK~~~G~Tp~~ya~a~R~~-------~a~~~L~~g~-sv~~a~~d 154 (187)
T COG2169 85 ATACRLIEQNP--EKRWLEELADELGVSPSTLHRLFKAITGMTPKEYARARRMG-------RARKQLRMGA-SVTDAQID 154 (187)
T ss_pred HHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHH-------HHHHHHHCCC-CHHHHHHH
T ss_conf 99999998188--74638999999678959999999998389999999999999-------9999973788-63589998
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf ------64002565545114344688999
Q gi|254780299|r 532 ------NRFLDNCHSTHCMLHGRFNAAHI 554 (562)
Q Consensus 532 ------~Rl~~~~~~~~g~l~a~~d~~~~ 554 (562)
++.-..-...+||-|..++..++
T Consensus 155 aGf~s~s~F~~af~~~~G~~P~~~r~~~~ 183 (187)
T COG2169 155 AGFESSSRFYDAFSKILGMTPTKFRHGGI 183 (187)
T ss_pred HCCCCHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 27887688999999872998788876033
No 82
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=20.47 E-value=44 Score=11.88 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=16.4
Q ss_pred CCCEEEECCEEEE-EECCCCCEEEE
Q ss_conf 8966898451468-63421157999
Q gi|254780299|r 222 SDGIYCLSGHKWF-LSSPMSDAFIM 245 (562)
Q Consensus 222 gdg~y~LnG~Kwf-~sa~~ad~~lV 245 (562)
.|| +.||-+|+ +++++.|+.-+
T Consensus 265 ~~G--ItNGA~WY~v~GgMQD~nY~ 287 (405)
T cd03869 265 EDG--IINGASWHTVAGSMNDFSYL 287 (405)
T ss_pred CCC--EECCCEEECCCCCCCCCCCC
T ss_conf 787--06042532156762102422
No 83
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=20.32 E-value=44 Score=11.86 Aligned_cols=19 Identities=37% Similarity=0.779 Sum_probs=15.4
Q ss_pred CCEEEECCEEEE-EECCCCCEE
Q ss_conf 966898451468-634211579
Q gi|254780299|r 223 DGIYCLSGHKWF-LSSPMSDAF 243 (562)
Q Consensus 223 dg~y~LnG~Kwf-~sa~~ad~~ 243 (562)
|| +.||-+|+ +++++.|+.
T Consensus 255 ~G--ItNGA~WY~v~GgMQD~n 274 (395)
T cd03867 255 GG--IINGAEWYSFSGGMSDFN 274 (395)
T ss_pred CC--EECCCEEEECCCCCHHHH
T ss_conf 87--053515540467600343
No 84
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=20.03 E-value=45 Score=11.82 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999840462
Q gi|254780299|r 326 SGMRVSLAEAIHYARRRHV 344 (562)
Q Consensus 326 G~ar~al~~A~~yA~~R~~ 344 (562)
|+...+++.-..||.++..
T Consensus 473 GiG~~s~~~~~~~a~~~~i 491 (811)
T TIGR01073 473 GIGASSLEKIRSYALELNI 491 (811)
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 6446789999999986088
Done!