HHsearch results for GI: 254780299 and protein with PDBid: 1u8v_A
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.8e-37 Score=268.03 Aligned_cols=340 Identities=13% Similarity=0.062 Sum_probs=238.0
Q ss_pred CCCCCEEECCHHHH-------HHHHHHHHCCC--------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 85213656688999-------99999996796--------------2033776666444763799999999983014453
Q gi|254780299|r 91 GERWDKVEFHPAWH-------ALLRRSIHDGL--------------HCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAG 149 (562)
Q Consensus 91 G~r~d~v~~~p~~~-------~l~~~~~~~Gl--------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g 149 (562)
|+||+.|..||+++ ++++...+.-. ++..|..+.... --..+......|++...|
T Consensus 23 Ge~V~dv~~hpaf~~~~~~~a~~yD~~~~p~~~d~~t~~~~~~g~~~~~~~~~p~s~e----dL~~r~~~~~~~a~~~~g 98 (490)
T 1u8v_A 23 GEKIENWVDHPMIRPSINCVRMTYELAQDPQYADLMTTKSNLIGKTINRFANLHQSTD----DLRKKVKMQRLLGQKTAS 98 (490)
T ss_dssp TEECSSGGGCTTTHHHHHHHHHHHHHHHCTTTHHHHEEECTTTSSEEEGGGCCCCSHH----HHHHHHHHHHHHHHHHSS
T ss_pred CEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHCCCCCHH----HHHHHHHHHHHHHHHCCC
T ss_conf 9983788887555799999999886518931047215551898875012124899999----999999999999986074
Q ss_pred CC--CCHHHH----H-HHHHHHH--CC--HHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHC----
Q ss_conf 12--213567----7-8999985--08--78898730120010005442660015521235544588888786654----
Q gi|254780299|r 150 HL--MSPSVT----S-ASMVALM--TT--PRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAI---- 214 (562)
Q Consensus 150 ~~--cp~~mt----~-~a~~~L~--~~--~e~~~~~lp~l~s~~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~---- 214 (562)
.+ ||-... . ....++. ++ .+.+.+|++.+..+ .+..+.+||||+++++....
T Consensus 99 ~~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-------------dl~~t~a~~~Pq~~rs~~~~~~~~ 165 (490)
T 1u8v_A 99 CFQRCVGMDAFNAVFSTTYEIDQKYGTNYHKNFTEYLKYIQEN-------------DLIVDGAMTDPKGDRGLAPSAQKD 165 (490)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------TCCEEEECCCCCSCTTSCGGGCSS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCCCCCCCCCHHCCC
T ss_conf 2203454016889998789898874837899999999999966-------------936554223677675557110158
Q ss_pred ----CEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECC------CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf ----3027864896689845146863-42115799970469------961799987758988403478863047554565
Q gi|254780299|r 215 ----TSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVE------GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRS 283 (562)
Q Consensus 215 ----~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~------~Gls~FlVp~~~pgg~~n~v~i~r~~~klG~r~ 283 (562)
.+.+++++|| |+|||.|+|+| ++.||.++|+++|+ +++++|+||+++|| |++...++|+|+++
T Consensus 166 ~~~~~~vve~~~dG-~VVnG~K~~~T~a~~AD~i~V~~~t~~~~~~~~~~~~FlVp~~tpG-----v~v~~~~~~~g~r~ 239 (490)
T 1u8v_A 166 PDLFLRIVEKREDG-IVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDADG-----LFMIYGRQSCDTRK 239 (490)
T ss_dssp TTSSCEEEEECSSE-EEEEEEECSCTTCTTCSEEEECCSSCCCGGGGGGCEEEEEETTCTT-----EEEEECCCTTGGGG
T ss_pred CCCCEEEEEEECCE-EEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC-----EEEEECCCCCCCCC
T ss_conf 65014799996997-9996268876077204879997046888776780699999769898-----38840466666433
Q ss_pred CC---------------EEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77---------------27999869075---3007776579999997301333579999999999999999998404622
Q gi|254780299|r 284 NA---------------TVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVS 345 (562)
Q Consensus 284 ~~---------------t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~~A~~yA~~R~~f 345 (562)
+. ++++.||||.+ ++++..+. .....+...|......+.|.++.++.+++.|+.+|.+|
T Consensus 240 ~~~~~~~~~~s~~~~e~da~v~FDdV~VP~e~v~~~g~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~~ 316 (490)
T 1u8v_A 240 MEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQEY---DFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD 316 (490)
T ss_dssp GSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEESCG---GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 346788777764457870489735535768874202659---99999999889999999999999999999999999860
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24235388889999999999999999999999887201110367776556799999999999999995699885213000
Q gi|254780299|r 346 GGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYI 425 (562)
Q Consensus 346 G~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~~Aiqi~GG~Gy~ 425 (562)
+++|.+||.||++|++|.+.+|++++++++++...+.+....-.. .....+++|.++++...+++..++|++||..++
T Consensus 317 ~~~i~~~~~Vq~kLaem~~~~E~~ral~~~a~~~~~~~~~g~~~P--~~~~~~~~k~~~~e~~~~~~~~~~~l~Gg~~~~ 394 (490)
T 1u8v_A 317 YNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQI--DLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT 394 (490)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEEC--CHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 863743388999999999999999999999998245898776577--789999999999999999999999972776104
Q ss_pred CC----------------------------C---------HHHHHHHCCHH---------HHH-CCCCHHHHHHHHHHHH
Q ss_conf 45----------------------------5---------18898500122---------322-0462227899999983
Q gi|254780299|r 426 EE----------------------------R---------SIARHYRESPA---------NSI-LLGSGNAMVLDVLNLL 458 (562)
Q Consensus 426 ee----------------------------~---------~leRl~RDA~v---------~~I-~EGt~~I~aldv~r~l 458 (562)
-. . .+-|+.||+.. ..| |+||+.+|.+.+.|..
T Consensus 395 ~Ps~~d~~~~~~~~~~~~~~~~~l~kyl~g~~~~~~~~R~~l~rl~~Dl~~s~~~~~~~~~e~~~~Gs~~~~r~~i~r~~ 474 (490)
T 1u8v_A 395 MPSEADFKSETVVGRDGETIGDFCNKFFAAAPTCTTEERMRVLRFLENICLGASAVGYRTESMHGAGSPQAQRIMIARQG 474 (490)
T ss_dssp CCCHHHHTCCCBCSTTSCBHHHHHHHHTCCSTTSCHHHHHHHHHHHHHHHTSTTHHHHTHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEEEEEECCCCHHHHHHHHHHHC
T ss_conf 87545443742134443320168999854689998899999999999976170120010155203898899999999856