HHsearch results for GI: 254780299 and protein with PDBid: 2vig_A
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=0 Score=382.70 Aligned_cols=330 Identities=21% Similarity=0.257 Sum_probs=278.9
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---HHHHHCCHHHHHHHHHHHCCC
Q ss_conf 99999996796203377666644476379999999998301445312213567789---999850878898730120010
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSAS---MVALMTTPRVHKDWAPKIFSR 181 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a---~~~L~~~~e~~~~~lp~l~s~ 181 (562)
+.++...+.||.++.++.++|+.+.... .........+...........+.... ......+++++.+|++++..+
T Consensus 41 ~~~~~l~~~Gl~~~~vP~e~GG~g~~~~--~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 118 (391)
T 2vig_A 41 AQVKKMGGLGLLAMDVPEELGGAGLDYL--AYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSG 118 (391)
T ss_dssp HHHHHHHHHTTTSTTSCGGGTSCCCCHH--HHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSS
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCCHH--HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCC
T ss_conf 9999999779986689965699999999--99999999986346655310012304568998615488999983631246
Q ss_pred CCCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEE-CCCCCEEEEEEECCC-----CCEE
Q ss_conf 0054426600155212355445888887866543027864896689845146863-421157999704699-----6179
Q gi|254780299|r 182 EYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLS-SPMSDAFIMLAQVEG-----RVGC 255 (562)
Q Consensus 182 ~~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~s-a~~ad~~lVlArt~~-----Gls~ 255 (562)
+ ...++++|||++|||+..++|+|+++++| |+|||+|+|+| ++.+|+++++|++++ |+++
T Consensus 119 ~-------------~~~~~~~tE~~~gs~~~~~~t~a~~~~~g-~~l~G~k~~is~~~~ad~~~~~a~~~~~~~~~~~~~ 184 (391)
T 2vig_A 119 D-------------KIGCFALSEPGNGSDAGAASTTARAEGDS-WVLNGTKAWITNAWEASAAVVFASTDRALQNKSISA 184 (391)
T ss_dssp S-------------CCEEEECCBTTBSSSGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEECCSSSTTSCEEE
T ss_pred C-------------CCCCCCCCCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEE
T ss_conf 4-------------22344557788788756660599997999-999558998726620106899874487777782599
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877589884034788630475545657727999869075---300777657999999730133357999999999999
Q gi|254780299|r 256 FLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSL 332 (562)
Q Consensus 256 FlVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al 332 (562)
|+||++.|| +++.+.++++|+++++|+.+.|++|.+ ++||++|+|++.++..++.+|+.+++.++|++++++
T Consensus 185 ~lV~~~~~g-----v~i~~~~~~~G~rgt~s~~v~fd~v~Vp~~~vi~~~~~g~~~~~~~l~~~r~~~~a~~lG~a~~al 259 (391)
T 2vig_A 185 FLVPMPTPG-----LTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259 (391)
T ss_dssp EEEESSCTT-----EEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCC-----EEECCCCCCCCCCCCCEEEEEEECEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999779997-----697257676657778637999904486599908998946999999899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999984046222423538888999999999999999999999988720111036777655679999999999999999
Q gi|254780299|r 333 AEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412 (562)
Q Consensus 333 ~~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~ 412 (562)
+.+++|+++|++||+||.++|.+|..++++.+...+++++.+.+....|.+..... .++++|+++++.+.+++
T Consensus 260 ~~a~~~~~~R~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~aK~~~~~~~~~v~ 332 (391)
T 2vig_A 260 DCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIK-------EAAMAKLAASEAATAIS 332 (391)
T ss_dssp HHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHHHHHH
T ss_conf 99999998551169841230889999999999999999999999998645897389-------99999999999999999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCH
Q ss_conf 56998852130004551889850012232204622278999999831260
Q gi|254780299|r 413 AEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGT 462 (562)
Q Consensus 413 ~~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r~~ 462 (562)
+++++++||.||+.++|++|+|||+++.+|+|||++|+.+.+.|-+.+..
T Consensus 333 ~~a~~~~Gg~g~~~~~~l~r~~RDa~~~~i~~G~~~i~~~~l~~~ll~~~ 382 (391)
T 2vig_A 333 HQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSY 382 (391)
T ss_dssp HHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHCCCCHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 99999638633236787999997502245607649999999999985284