HHsearch results for GI: 254780299 and protein with PDBid: 3pfd_A
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=0 Score=419.65 Aligned_cols=329 Identities=18% Similarity=0.255 Sum_probs=285.6
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCC
Q ss_conf 999999967962033776666444763799999999983014453122135677899998--508788987301200100
Q gi|254780299|r 105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSRE 182 (562)
Q Consensus 105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~ 182 (562)
++++...+.||.++.++.++++.+.. ....+......+..+........++..+...+ .++++++++|+|++.+++
T Consensus 54 ~~~~~l~e~Gl~~l~vP~~~GG~g~~--~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~ 131 (393)
T 3pfd_A 54 EALAALNSSGFSAIHVPEEYGGQGAD--SVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGE 131 (393)
T ss_dssp HHHHHHHHHTCSCTTSCGGGTCCCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 99999997799865899656999999--9999999999976144444333334321001011378999998547762898
Q ss_pred CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECC-----CCCEEE
Q ss_conf 0544266001552123554458888878665430278648966898451468634-2115799970469-----961799
Q gi|254780299|r 183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVE-----GRVGCF 256 (562)
Q Consensus 183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~-----~Gls~F 256 (562)
. +.++++|||.+|||+..++|+|++++|| |+|||+|+|+|+ +.+|+++|+|+++ .|+++|
T Consensus 132 ~-------------~~~~a~tE~~~gs~~~~~~t~a~~~~~g-~~l~G~k~~~s~~~~A~~~iv~a~~~~~~~~~~~~~~ 197 (393)
T 3pfd_A 132 A-------------MASYALSEREAGSDAASMRTRAVADGDD-WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAF 197 (393)
T ss_dssp C-------------CEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEE
T ss_pred E-------------EEECCCCCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEE
T ss_conf 6-------------4302335888787766750599997999-9999999977797627899999997888887845999
Q ss_pred EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9877589884034788630475545657727999869075---3007776579999997301333579999999999999
Q gi|254780299|r 257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLA 333 (562)
Q Consensus 257 lVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~ 333 (562)
+||++.|| |++.+.++++|+++++++++.|+||++ ++||++|+|+++++..++.+|+.+++.++|+++++++
T Consensus 198 lV~~~~~G-----v~i~~~~~~~G~r~t~s~~v~~~dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~ 272 (393)
T 3pfd_A 198 MVHKDDEG-----FTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALD 272 (393)
T ss_dssp EEETTSTT-----EEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCC-----EEECCCCCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99579997-----6981675666577785489999536985999089989479999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999840462224235388889999999999999999999999887201110367776556799999999999999995
Q gi|254780299|r 334 EAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIA 413 (562)
Q Consensus 334 ~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~ 413 (562)
++++|+++|++||+||.++|.+|++|++|.+++++++++++.+++.+|++.... ...++++|+++++.+.++++
T Consensus 273 ~~~~~~~~R~~~g~~i~~~q~vq~~la~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~a~aK~~a~~~a~~~~~ 346 (393)
T 3pfd_A 273 AAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDL------GFISAASKCFASDVAMEVTT 346 (393)
T ss_dssp HHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999975753994546999999999877899999889999999997499875------89999999999999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 69988521300045518898500122322046222789999998312
Q gi|254780299|r 414 EAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK 460 (562)
Q Consensus 414 ~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r 460 (562)
+|+|++||.||++++|++|+|||+++.+|||||++||.+.+.|.+.|
T Consensus 347 ~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~i~r~ll~ 393 (393)
T 3pfd_A 347 DAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHC
T ss_conf 99997173664577789999987514047577899999999999729