HHsearch results for GI: 254780299 and protein with PDBid: 3pfd_A

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00  E-value=0  Score=419.65  Aligned_cols=329  Identities=18%  Similarity=0.255  Sum_probs=285.6

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHHHHHHCCCC
Q ss_conf             999999967962033776666444763799999999983014453122135677899998--508788987301200100
Q gi|254780299|r  105 ALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVAL--MTTPRVHKDWAPKIFSRE  182 (562)
Q Consensus       105 ~l~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~cp~~mt~~a~~~L--~~~~e~~~~~lp~l~s~~  182 (562)
                      ++++...+.||.++.++.++++.+..  ....+......+..+........++..+...+  .++++++++|+|++.+++
T Consensus        54 ~~~~~l~e~Gl~~l~vP~~~GG~g~~--~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~  131 (393)
T 3pfd_A           54 EALAALNSSGFSAIHVPEEYGGQGAD--SVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGE  131 (393)
T ss_dssp             HHHHHHHHHTCSCTTSCGGGTCCCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHCCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCCCCCCCHHHCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf             99999997799865899656999999--9999999999976144444333334321001011378999998547762898


Q ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCEEEECCEEEEEEC-CCCCEEEEEEECC-----CCCEEE
Q ss_conf             0544266001552123554458888878665430278648966898451468634-2115799970469-----961799
Q gi|254780299|r  183 YDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSS-PMSDAFIMLAQVE-----GRVGCF  256 (562)
Q Consensus       183 ~~~~~~~~~~k~g~~~~~~lTEp~~GSDv~~~~T~A~~~gdg~y~LnG~Kwf~sa-~~ad~~lVlArt~-----~Gls~F  256 (562)
                      .             +.++++|||.+|||+..++|+|++++|| |+|||+|+|+|+ +.+|+++|+|+++     .|+++|
T Consensus       132 ~-------------~~~~a~tE~~~gs~~~~~~t~a~~~~~g-~~l~G~k~~~s~~~~A~~~iv~a~~~~~~~~~~~~~~  197 (393)
T 3pfd_A          132 A-------------MASYALSEREAGSDAASMRTRAVADGDD-WILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAF  197 (393)
T ss_dssp             C-------------CEEEECCBTTBSSCGGGCCCEEEEETTE-EEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEE
T ss_pred             E-------------EEECCCCCCCCCCCCCCCEEEEEEECCE-EEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEE
T ss_conf             6-------------4302335888787766750599997999-9999999977797627899999997888887845999


Q ss_pred             EEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCEEE---EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9877589884034788630475545657727999869075---3007776579999997301333579999999999999
Q gi|254780299|r  257 LVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLA  333 (562)
Q Consensus       257 lVp~~~pgg~~n~v~i~r~~~klG~r~~~t~ei~f~~~~~---~llG~~g~G~~~i~~~l~~~Rl~~a~~~~G~ar~al~  333 (562)
                      +||++.||     |++.+.++++|+++++++++.|+||++   ++||++|+|+++++..++.+|+.+++.++|+++++++
T Consensus       198 lV~~~~~G-----v~i~~~~~~~G~r~t~s~~v~~~dv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~  272 (393)
T 3pfd_A          198 MVHKDDEG-----FTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGALD  272 (393)
T ss_dssp             EEETTSTT-----EEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCC-----EEECCCCCCCCCCCCCEEEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99579997-----6981675666577785489999536985999089989479999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999840462224235388889999999999999999999999887201110367776556799999999999999995
Q gi|254780299|r  334 EAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIA  413 (562)
Q Consensus       334 ~A~~yA~~R~~fG~~L~~~p~v~~~LAdm~~~~eaa~~l~~~~A~~~D~~~~~~~~~a~arl~t~iaK~~~~e~a~~v~~  413 (562)
                      ++++|+++|++||+||.++|.+|++|++|.+++++++++++.+++.+|++....      ...++++|+++++.+.++++
T Consensus       273 ~~~~~~~~R~~~g~~i~~~q~vq~~la~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~a~aK~~a~~~a~~~~~  346 (393)
T 3pfd_A          273 AAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDL------GFISAASKCFASDVAMEVTT  346 (393)
T ss_dssp             HHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHHHHHHHHHHH
T ss_conf             999999975753994546999999999877899999889999999997499875------89999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             69988521300045518898500122322046222789999998312
Q gi|254780299|r  414 EAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEK  460 (562)
Q Consensus       414 ~Aiqi~GG~Gy~ee~~leRl~RDA~v~~I~EGt~~I~aldv~r~l~r  460 (562)
                      +|+|++||.||++++|++|+|||+++.+|||||++||.+.+.|.+.|
T Consensus       347 ~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~i~r~ll~  393 (393)
T 3pfd_A          347 DAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR  393 (393)
T ss_dssp             HHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCHHHCCCCHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHC
T ss_conf             99997173664577789999987514047577899999999999729