PSIBLAST alignment of GI: 254780299 and protein with PDB id: 1udy
>gi|40889734|pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396
>gi|40889735|pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396
Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats.
Identities = 66/393 (16%), Positives = 130/393 (33%), Gaps = 51/393 (12%)
Query: 78 NYNTPQLHAYGPGGERWDKVEFH-PAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIR 136
P Y G E+ P LL+R+ GL + SF +
Sbjct: 33 EEIIPVAAEYDRTG------EYPVP----LLKRAWELGLMNTHIPESFGGLGLGIIDSC- 81
Query: 137 AARLYLMAQLEAGHLMSPSVTSASMVALMTTP-RVHKDWAPKIFSREYDPTNKAPMQKTS 195
L + T + ++ + K + ++ +
Sbjct: 82 LITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT-------------EEP 128
Query: 196 VAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE---- 250
+ +TE G+D+A I ++ +K D Y ++G K W + ++ + +LA+ +
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGD-EYIINGQKMWITNGGKANWYFLLARSDPDPK 187
Query: 251 ----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLN 303
F+V + R + +G R + T + F + +L
Sbjct: 188 APASKAFTGFIVEADTPG-----VQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEG 242
Query: 304 VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
A +V + +L EA YA R G +L + + +AD+A
Sbjct: 243 AGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMA 302
Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
+ + A R A D + A I K + +A + +A++ GG+G
Sbjct: 303 MKVELARLSYQRAAWEIDSGR-------RNTYYASIAKAYAADIANQLATDAVQVFGGNG 355
Query: 424 YIEERSIARHYRESPANSILLGSGNAMVLDVLN 456
+ E + + R++ I G+ + +
Sbjct: 356 FNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 388