PSIBLAST alignment of GI: 254780299 and protein with PDB id: 1udy

>gi|40889734|pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396
>gi|40889735|pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396
 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 130/393 (33%), Gaps = 51/393 (12%)

Query: 78  NYNTPQLHAYGPGGERWDKVEFH-PAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIR 136
               P    Y   G      E+  P    LL+R+   GL  +    SF  +         
Sbjct: 33  EEIIPVAAEYDRTG------EYPVP----LLKRAWELGLMNTHIPESFGGLGLGIIDSC- 81

Query: 137 AARLYLMAQLEAGHLMSPSVTSASMVALMTTP-RVHKDWAPKIFSREYDPTNKAPMQKTS 195
                L            + T   +  ++    +  K +  ++              +  
Sbjct: 82  LITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT-------------EEP 128

Query: 196 VAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHK-WFLSSPMSDAFIMLAQVE---- 250
           +     +TE   G+D+A I ++ +K  D  Y ++G K W  +   ++ + +LA+ +    
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGD-EYIINGQKMWITNGGKANWYFLLARSDPDPK 187

Query: 251 ----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFG---FLLGDLN 303
                    F+V           +   R +  +G R + T  + F +       +L    
Sbjct: 188 APASKAFTGFIVEADTPG-----VQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEG 242

Query: 304 VSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIA 363
                            A  +V   + +L EA  YA  R   G +L +   +   +AD+A
Sbjct: 243 AGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMA 302

Query: 364 LDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSG 423
           + +  A     R A   D  +            A I K +   +A  +  +A++  GG+G
Sbjct: 303 MKVELARLSYQRAAWEIDSGR-------RNTYYASIAKAYAADIANQLATDAVQVFGGNG 355

Query: 424 YIEERSIARHYRESPANSILLGSGNAMVLDVLN 456
           +  E  + +  R++    I  G+     + +  
Sbjct: 356 FNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 388