PSIBLAST alignment of GI: 254780299 and protein with PDB id: 1ukw

>gi|56966249|pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379
>gi|56966250|pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379
 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 125/357 (35%), Gaps = 37/357 (10%)

Query: 112 HDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTS-ASMVALMTTPRV 170
             GL  +I    +  +  K            +A    G    P  +       L+     
Sbjct: 47  EVGLLNAIIPEEYGGMGLK--MLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTE- 103

Query: 171 HKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSG 230
                      E       P+ +        L+E   G+D AA+ ++  +  D  Y L+G
Sbjct: 104 -----------EQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGD-HYVLNG 151

Query: 231 HKWFLSSP-MSDAFIMLAQVE-----GRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSN 284
            K ++S+   ++  ++ A V        V   +V R             ++  K+G R++
Sbjct: 152 TKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPG-----FKAIKIHGKMGQRAS 206

Query: 285 ATVELEFSNTFG---FLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARR 341
            T EL F +        LG+                +  A  SV   R +L EA  YA+ 
Sbjct: 207 GTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKE 266

Query: 342 RHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITK 401
           R   G  + +   ++  + D+ + I  A   ++  A   D+    +  +A       I K
Sbjct: 267 REAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASA-------IAK 319

Query: 402 YWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLL 458
            +  ++A     +A++  GG GY+ E  + +  R+   N I  G+     L +   +
Sbjct: 320 AYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHI 376