RPSBLAST alignment for GI: 254780299 and conserved domain: cd01154
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates. Length = 418
Score = 364 bits (936), Expect = e-101
Identities = 170/433 (39%), Positives = 243/433 (56%), Gaps = 24/433 (5%)
Query: 37 YSSDSLLVALIANF-PSVVHKELELLGEYVLSCTAQELARMANYNTPQLHAYGPGGERWD 95
Y D +L + F +L LGE ELAR+A+ N P L + G R D
Sbjct: 1 YLDDPVLQQTLRYFGDPEEEPDLSRLGELA-GGELYELARLADRNPPVLEMWDRWGRRVD 59
Query: 96 KVEFHPAWHALLRRSIHDGLHCSIWDRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPS 155
+V HPAWHAL+RR I +G+ P + H AA YL++ AG L +
Sbjct: 60 RVWVHPAWHALMRRLIEEGVINIED----GPAGEGRRHVHFAAG-YLLSDAAAGLLCPLT 114
Query: 156 VTSASMVALMT-TPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAI 214
+T A++ AL P K + P + S Y KT + G +TEK+GG+D+ A
Sbjct: 115 MTDAAVYALRKYGPEELKQYLPGLLSDRY---------KTGLLGGTWMTEKQGGSDLGAN 165
Query: 215 TSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGR------VGCFLVPRLLEDGSPN 268
+ ++ G+Y L+GHKWF S+P++DA ++LA+ EG + FLVPRLLEDG+ N
Sbjct: 166 ETTAERSGGGVYRLNGHKWFASAPLADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRN 225
Query: 269 GLCYQRLKNKIGNRSNATVELEFSNTFGFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGM 328
G +RLK+K+G RS AT E+EF + +L+GD + +M + LD+A+ ++ M
Sbjct: 226 GYRIRRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIM 285
Query: 329 RVSLAEAIHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEA-KSRS 387
R +L+EA HYAR R G LID P+M+R +A++ +D+ AATAL+FR A +FD A +
Sbjct: 286 RRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKP 345
Query: 388 EEAAYARIMAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSG 447
EA AR+ P+ K CK A V +EAME GG+GY+EE +AR +RE+ I G+G
Sbjct: 346 VEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTG 405
Query: 448 NAMVLDVLNLLEK 460
N LDVL +L K
Sbjct: 406 NIQALDVLRVLVK 418