RPSBLAST alignment of GI: 254780299 and protein with PDBid: 2jif

>2jif_A Short/branched chain specific acyl-COA dehydrogenase; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, acetylation; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  118 bits (297), Expect = 3e-27
 Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 22/295 (7%)

Query: 165 MTTPRVHKDWAPKIFSREYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDG 224
                   +   +    E       P   T       L+E   G+D  A+ ++  K  D 
Sbjct: 111 CEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDY 170

Query: 225 IYCLSGHKWFLSSPM-SDAFIMLAQVEGRVG-----CFLVPRLLEDGSPNGLCYQRLKNK 278
            Y L+G K ++SS   +  F+++A V+  +G      FLV R     +P GL   + +NK
Sbjct: 171 -YVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDR----DTP-GLHIGKPENK 224

Query: 279 IGNRSNATVELEFSNTF---GFLLGDLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEA 335
           +G R+++T  L F N       +LG +               +  A   +   +      
Sbjct: 225 LGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYT 284

Query: 336 IHYARRRHVSGGILIDQPVMKRAIADIALDIAAATALSFRLANSFDEAKSRSEEAAYARI 395
           I Y + R   G  L D   ++  +A +A  + AA  L++  A   +  K   +EA+    
Sbjct: 285 IPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEAS---- 340

Query: 396 MAPITKYWCCKMAPAVIAEAMECIGGSGYIEERSIARHYRESPANSILLGSGNAM 450
              + KY+  ++A    ++ +E +GG GY ++  + +++R++   +I  G+ N  
Sbjct: 341 ---MAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ 392