BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein
[Candidatus Liberibacter asiaticus str. psy62]
(562 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 562
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/562 (100%), Positives = 562/562 (100%)
Query: 1 MTLREIYRRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANFPSVVHKELEL 60
MTLREIYRRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANFPSVVHKELEL
Sbjct: 1 MTLREIYRRLAMNQVHQPSDSLFALNQPPLFIGMNAYSSDSLLVALIANFPSVVHKELEL 60
Query: 61 LGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW 120
LGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW
Sbjct: 61 LGEYVLSCTAQELARMANYNTPQLHAYGPGGERWDKVEFHPAWHALLRRSIHDGLHCSIW 120
Query: 121 DRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFS 180
DRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFS
Sbjct: 121 DRSFEPVVRKQAHKIRAARLYLMAQLEAGHLMSPSVTSASMVALMTTPRVHKDWAPKIFS 180
Query: 181 REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMS 240
REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMS
Sbjct: 181 REYDPTNKAPMQKTSVAIGLGLTEKRGGTDIAAITSQGQKISDGIYCLSGHKWFLSSPMS 240
Query: 241 DAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLG 300
DAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLG
Sbjct: 241 DAFIMLAQVEGRVGCFLVPRLLEDGSPNGLCYQRLKNKIGNRSNATVELEFSNTFGFLLG 300
Query: 301 DLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIA 360
DLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIA
Sbjct: 301 DLNVSTGPVEDMKILIYLDSAIMSVSGMRVSLAEAIHYARRRHVSGGILIDQPVMKRAIA 360
Query: 361 DIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIG 420
DIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIG
Sbjct: 361 DIALDIAAATALSFRLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVIAEAMECIG 420
Query: 421 GSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSG 480
GSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSG
Sbjct: 421 GSGYIEERSIARHYRESPANSILLGSGNAMVLDVLNLLEKGTNLFEQLFSTLEQDLGSSG 480
Query: 481 KKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHS 540
KKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHS
Sbjct: 481 KKVITILRDSISLCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVFLENRFLDNCHS 540
Query: 541 THCMLHGRFNAAHIIDSLYLDC 562
THCMLHGRFNAAHIIDSLYLDC
Sbjct: 541 THCMLHGRFNAAHIIDSLYLDC 562
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 27 QPPLFIGMNAYSSDS-LLVALIANFPSVVHKELELLGE--YVLSCTAQELAR 75
+P + +G Y S S LL +I PS+VH++ ++G+ +LS Q +AR
Sbjct: 93 KPNVVVGFGGYHSISPLLAGMILRIPSMVHEQNVIMGKANRLLSWGVQIIAR 144
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 25.4 bits (54), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 212 AAITSQGQKISDGIYCLSGHKWFLSSPMSDAFIMLAQVEGRVGC 255
A I+ + + IY LSG K+ LSSP I+ +++ G
Sbjct: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643
>gi|254780932|ref|YP_003065345.1| hypothetical protein CLIBASIA_04155 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 236
Score = 25.0 bits (53), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 362 IALDIAAATALSF-RLANSFDEAKSRSEEAAYARIMAPITKYWCCKMAPAVI 412
++ D+ A SF +L + E++SRS + ++ P+ + W P ++
Sbjct: 167 VSSDVGDQVASSFDQLVKALRESESRSLDQLSLDVLRPMLREWLDDNLPGIV 218
>gi|254780531|ref|YP_003064944.1| flagellin domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 452
Score = 25.0 bits (53), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 493 LCKEDKGLARFLTEKIALASSAAALYRAGMNDIADVF 529
+ K D G +++ I L SS + +AGM+ DV
Sbjct: 52 IMKSDNGALSAVSDAIGLGSSKVDIAKAGMSKAIDVM 88
>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 167
Score = 23.9 bits (50), Expect = 6.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 245 MLAQVEGRVGCFLVPRLLEDGSPNG 269
+L++VE +GC VP + PNG
Sbjct: 82 LLSEVEDTLGCIFVPSSSKFLYPNG 106
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,598
Number of Sequences: 1233
Number of extensions: 13366
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 11
length of query: 562
length of database: 328,796
effective HSP length: 79
effective length of query: 483
effective length of database: 231,389
effective search space: 111760887
effective search space used: 111760887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)