Query gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs 112 out of 3842
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 15:52:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780300.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00658 orni_carb_tr ornithi 100.0 0 0 766.8 19.8 296 7-306 1-341 (341)
2 PRK00856 pyrB aspartate carbam 100.0 0 0 701.4 23.2 303 2-308 2-304 (304)
3 PRK13814 pyrB aspartate carbam 100.0 0 0 678.2 23.4 304 5-310 4-308 (310)
4 PRK08192 aspartate carbamoyltr 100.0 0 0 676.6 23.4 309 3-316 2-327 (338)
5 COG0078 ArgF Ornithine carbamo 100.0 0 0 672.0 21.4 299 1-306 1-310 (310)
6 PRK03515 ornithine carbamoyltr 100.0 0 0 659.7 23.5 302 1-307 1-334 (334)
7 PRK12562 ornithine carbamoyltr 100.0 0 0 659.7 23.6 302 1-307 1-334 (334)
8 PRK04284 ornithine carbamoyltr 100.0 0 0 655.6 22.8 302 1-307 1-332 (332)
9 PRK02255 putrescine carbamoylt 100.0 0 0 651.6 23.2 301 4-310 2-317 (341)
10 PRK02102 ornithine carbamoyltr 100.0 0 0 651.1 23.2 299 3-307 4-331 (331)
11 PRK01713 ornithine carbamoyltr 100.0 0 0 647.2 23.8 301 1-306 1-334 (334)
12 PRK00779 ornithine carbamoyltr 100.0 0 0 646.9 23.5 300 2-308 1-308 (308)
13 TIGR00670 asp_carb_tr aspartat 100.0 0 0 645.0 17.5 300 7-306 1-336 (336)
14 TIGR03316 ygeW probable carbam 100.0 0 0 619.1 22.7 296 4-303 1-356 (357)
15 PRK07200 aspartate/ornithine c 100.0 0 0 613.8 20.6 306 1-309 14-379 (395)
16 COG0540 PyrB Aspartate carbamo 100.0 0 0 609.3 19.5 305 2-309 3-315 (316)
17 PRK04523 N-acetylornithine car 100.0 0 0 602.3 20.2 294 4-307 1-335 (335)
18 PRK11891 aspartate carbamoyltr 100.0 0 0 579.0 20.0 306 4-315 85-408 (430)
19 KOG1504 consensus 100.0 0 0 554.6 12.9 297 4-307 37-346 (346)
20 PRK13376 pyrB bifunctional asp 100.0 0 0 427.0 16.8 306 1-308 1-334 (524)
21 pfam02729 OTCace_N Aspartate/o 100.0 0 0 324.2 10.0 140 7-152 1-140 (140)
22 pfam00185 OTCace Aspartate/orn 100.0 5.4E-43 0 299.0 10.5 143 157-304 1-155 (155)
23 PRK00257 erythronate-4-phospha 97.0 0.002 5.1E-08 42.3 6.0 127 127-278 83-216 (379)
24 PRK07574 formate dehydrogenase 96.8 0.0054 1.4E-07 39.5 6.5 125 125-266 137-284 (385)
25 pfam02826 2-Hacid_dh_C D-isome 96.5 0.0092 2.3E-07 38.0 6.3 102 155-278 33-134 (176)
26 PRK13243 glyoxylate reductase; 96.3 0.012 3E-07 37.3 5.7 93 155-266 147-240 (333)
27 PRK12480 D-lactate dehydrogena 96.2 0.044 1.1E-06 33.6 8.4 90 155-265 143-233 (330)
28 COG1052 LdhA Lactate dehydroge 96.0 0.031 8E-07 34.6 6.9 100 155-276 143-243 (324)
29 COG0111 SerA Phosphoglycerate 96.0 0.022 5.7E-07 35.5 6.0 102 155-276 139-240 (324)
30 PRK11790 D-3-phosphoglycerate 96.0 0.037 9.4E-07 34.1 7.0 92 155-266 148-239 (409)
31 PRK08410 2-hydroxyacid dehydro 95.9 0.031 8E-07 34.6 6.3 87 155-263 142-229 (311)
32 PRK06436 glycerate dehydrogena 95.6 0.11 2.8E-06 31.1 8.1 129 155-309 119-284 (303)
33 PRK13581 D-3-phosphoglycerate 95.5 0.066 1.7E-06 32.5 6.7 93 155-266 135-228 (524)
34 pfam00670 AdoHcyase_NAD S-aden 95.3 0.085 2.2E-06 31.8 6.7 116 141-282 7-124 (162)
35 PRK06932 glycerate dehydrogena 95.2 0.087 2.2E-06 31.7 6.7 87 155-264 144-231 (314)
36 TIGR02853 spore_dpaA dipicolin 95.2 0.13 3.2E-06 30.7 7.4 154 89-264 79-239 (288)
37 PRK10792 bifunctional 5,10-met 95.2 0.29 7.3E-06 28.3 10.8 211 9-266 5-231 (288)
38 PRK06487 glycerate dehydrogena 95.0 0.1 2.6E-06 31.2 6.4 86 155-264 145-231 (317)
39 PRK08605 D-lactate dehydrogena 94.7 0.12 3.1E-06 30.7 6.3 91 155-265 143-235 (332)
40 COG1004 Ugd Predicted UDP-gluc 94.6 0.032 8E-07 34.6 3.0 77 148-226 301-385 (414)
41 PRK08306 dipicolinate synthase 94.0 0.42 1.1E-05 27.3 7.8 133 88-224 78-217 (296)
42 PTZ00075 S-adenosyl-L-homocyst 93.3 0.15 3.9E-06 30.1 4.5 102 155-281 251-354 (476)
43 pfam05221 AdoHcyase S-adenosyl 93.0 0.37 9.4E-06 27.6 6.1 101 155-280 207-309 (430)
44 PRK05476 S-adenosyl-L-homocyst 92.8 0.33 8.3E-06 28.0 5.6 242 3-280 4-307 (427)
45 cd00401 AdoHcyase S-adenosyl-L 92.8 0.4 1E-05 27.4 6.0 102 155-281 199-302 (413)
46 pfam01488 Shikimate_DH Shikima 92.3 0.33 8.3E-06 28.0 5.1 114 150-286 4-125 (134)
47 PRK07531 bifunctional 3-hydrox 92.1 0.36 9.1E-06 27.7 5.1 27 94-120 96-123 (489)
48 PRK07066 3-hydroxybutyryl-CoA 90.4 0.81 2.1E-05 25.4 5.5 22 170-191 162-183 (321)
49 PRK05442 malate dehydrogenase; 90.2 0.79 2E-05 25.5 5.3 11 138-148 93-103 (325)
50 cd01080 NAD_bind_m-THF_DH_Cycl 89.6 0.49 1.3E-05 26.8 3.9 73 136-224 22-94 (168)
51 TIGR00936 ahcY adenosylhomocys 89.4 1.3 3.2E-05 24.2 5.8 124 156-311 209-334 (422)
52 pfam02882 THF_DHG_CYH_C Tetrah 89.0 0.6 1.5E-05 26.3 3.9 94 137-266 15-108 (159)
53 PRK06129 3-hydroxyacyl-CoA deh 88.5 0.83 2.1E-05 25.3 4.4 27 165-191 156-182 (308)
54 TIGR03026 NDP-sugDHase nucleot 88.4 0.56 1.4E-05 26.4 3.4 72 151-226 306-386 (411)
55 COG0059 IlvC Ketol-acid reduct 88.2 0.53 1.3E-05 26.6 3.2 70 41-115 13-87 (338)
56 cd05295 MDH_like Malate dehydr 87.7 0.67 1.7E-05 26.0 3.5 115 152-270 117-255 (452)
57 pfam01262 AlaDh_PNT_C Alanine 87.3 0.96 2.5E-05 24.9 4.1 102 154-271 16-125 (150)
58 PRK07232 malic enzyme; Reviewe 86.6 2.6 6.7E-05 22.1 8.0 176 88-293 115-319 (753)
59 TIGR02082 metH methionine synt 86.3 0.69 1.8E-05 25.9 3.0 213 56-291 428-682 (1265)
60 TIGR01469 cobA_cysG_Cterm urop 86.3 1.5 3.8E-05 23.7 4.6 15 176-190 98-112 (242)
61 COG0565 LasT rRNA methylase [T 86.3 0.86 2.2E-05 25.2 3.4 70 156-226 2-81 (242)
62 PRK08293 3-hydroxybutyryl-CoA 85.6 1.8 4.7E-05 23.1 4.8 27 165-191 158-184 (288)
63 PRK06719 precorrin-2 dehydroge 85.3 0.99 2.5E-05 24.9 3.3 72 149-225 4-78 (157)
64 COG0190 FolD 5,10-methylene-te 85.2 3.1 7.9E-05 21.6 10.1 160 44-224 30-206 (283)
65 KOG0068 consensus 85.1 2.3 5.8E-05 22.5 5.1 93 155-265 143-235 (406)
66 PRK00045 hemA glutamyl-tRNA re 85.0 1.3 3.2E-05 24.2 3.7 111 150-283 174-294 (429)
67 PRK05225 ketol-acid reductoiso 84.8 1.2 3.1E-05 24.2 3.6 21 34-54 25-45 (489)
68 PRK12862 malic enzyme; Reviewe 84.5 3.3 8.5E-05 21.4 8.5 175 89-293 122-325 (761)
69 PRK10433 putative RNA methyltr 84.5 1.2 3E-05 24.3 3.4 63 159-222 3-75 (228)
70 pfam01210 NAD_Gly3P_dh_N NAD-d 83.1 1.5 3.8E-05 23.7 3.5 62 159-223 1-76 (159)
71 pfam07991 IlvN Acetohydroxy ac 82.8 1.7 4.3E-05 23.3 3.6 121 156-281 2-131 (165)
72 COG0499 SAM1 S-adenosylhomocys 82.6 4 0.0001 20.9 5.8 238 10-279 10-307 (420)
73 PRK09260 3-hydroxybutyryl-CoA 82.4 2.4 6E-05 22.4 4.3 19 12-30 30-48 (289)
74 KOG1370 consensus 82.3 4.1 0.0001 20.9 5.5 246 3-281 7-314 (434)
75 TIGR01723 hmd_TIGR coenzyme F4 82.3 1.5 3.9E-05 23.6 3.2 82 164-266 102-185 (359)
76 pfam03446 NAD_binding_2 NAD bi 82.0 1.9 4.7E-05 23.1 3.6 61 160-223 3-63 (163)
77 TIGR00050 rRNA_methyl_1 RNA me 80.6 1.3 3.4E-05 24.0 2.5 100 156-262 2-119 (253)
78 PRK13403 ketol-acid reductoiso 80.4 1.2 3.1E-05 24.2 2.2 69 41-115 11-84 (335)
79 cd05212 NAD_bind_m-THF_DH_Cycl 79.9 3.1 8E-05 21.6 4.2 87 145-267 14-101 (140)
80 TIGR01759 MalateDH-SF1 malate 78.7 2.3 5.9E-05 22.5 3.2 111 157-271 2-135 (329)
81 pfam05222 AlaDh_PNT_N Alanine 77.5 3.7 9.5E-05 21.1 4.0 93 179-272 22-123 (135)
82 PRK06130 3-hydroxybutyryl-CoA 77.1 5 0.00013 20.3 4.6 23 169-191 156-178 (310)
83 COG2084 MmsB 3-hydroxyisobutyr 77.1 4.9 0.00013 20.3 4.5 101 88-195 44-166 (286)
84 PRK00961 H(2)-dependent methyl 76.8 2.3 5.9E-05 22.5 2.8 31 185-223 117-147 (345)
85 pfam02056 Glyco_hydro_4 Family 76.6 3.7 9.5E-05 21.1 3.8 80 128-227 4-84 (183)
86 PRK08655 prephenate dehydrogen 76.1 2.9 7.5E-05 21.8 3.1 93 103-195 59-166 (441)
87 PRK11559 garR tartronate semia 74.8 2.3 5.8E-05 22.5 2.3 24 171-194 142-165 (295)
88 pfam03807 F420_oxidored NADP o 74.8 2.1 5.4E-05 22.7 2.1 62 160-224 1-65 (93)
89 cd05197 GH4_glycoside_hydrolas 74.7 5.1 0.00013 20.2 4.1 136 10-150 32-183 (425)
90 cd05297 GH4_alpha_glucosidase_ 74.4 6.2 0.00016 19.7 4.4 145 4-150 27-184 (423)
91 PRK05479 ketol-acid reductoiso 73.9 2.4 6E-05 22.4 2.2 71 41-116 12-87 (336)
92 PRK11064 wecC UDP-N-acetyl-D-m 73.8 5.5 0.00014 20.0 4.0 72 153-227 315-397 (415)
93 PRK06718 precorrin-2 dehydroge 73.4 3.5 8.9E-05 21.3 3.0 69 153-224 5-77 (202)
94 PRK07634 pyrroline-5-carboxyla 72.7 3.2 8.2E-05 21.5 2.6 17 205-221 54-70 (245)
95 PRK05808 3-hydroxybutyryl-CoA 71.1 8.1 0.00021 18.9 4.4 19 12-30 31-49 (282)
96 KOG0409 consensus 70.9 3.2 8.2E-05 21.5 2.3 33 86-119 76-108 (327)
97 pfam02737 3HCDH_N 3-hydroxyacy 70.4 8 0.0002 19.0 4.2 112 160-275 1-150 (180)
98 PRK13940 glutamyl-tRNA reducta 70.3 6.9 0.00018 19.4 3.9 101 150-272 173-278 (414)
99 PRK09564 coenzyme A disulfide 70.2 4.1 0.0001 20.9 2.7 67 123-193 115-181 (443)
100 cd00650 LDH_MDH_like NAD-depen 69.6 8.9 0.00023 18.7 4.5 14 93-106 101-114 (263)
101 pfam00056 Ldh_1_N lactate/mala 69.3 9 0.00023 18.6 4.9 64 159-224 1-76 (142)
102 PRK06388 amidophosphoribosyltr 68.9 9.2 0.00023 18.6 5.4 92 103-198 292-400 (474)
103 TIGR00407 proA gamma-glutamyl 68.2 1.6 4.1E-05 23.5 0.3 46 87-136 177-222 (415)
104 PRK07660 consensus 67.6 9.8 0.00025 18.4 4.4 22 169-190 160-181 (283)
105 PRK05562 precorrin-2 dehydroge 67.4 6.2 0.00016 19.7 3.1 35 157-194 23-57 (222)
106 cd05298 GH4_GlvA_pagL_like Gly 67.3 6 0.00015 19.8 3.0 146 10-165 32-193 (437)
107 PRK12861 malic enzyme; Reviewe 66.5 10 0.00026 18.3 8.6 174 89-292 117-319 (762)
108 PRK09117 consensus 66.5 10 0.00026 18.2 4.4 18 12-29 30-47 (282)
109 PRK05282 peptidase E; Validate 66.3 5.6 0.00014 20.0 2.7 88 97-194 56-143 (233)
110 COG0345 ProC Pyrroline-5-carbo 65.3 5.2 0.00013 20.2 2.4 12 181-192 121-132 (266)
111 TIGR01161 purK phosphoribosyla 64.8 11 0.00028 18.0 4.0 50 65-124 15-64 (386)
112 pfam10561 UPF0565 Uncharacteri 64.6 8.4 0.00021 18.8 3.4 104 46-150 12-124 (299)
113 TIGR03385 CoA_CoA_reduc CoA-di 64.5 5.2 0.00013 20.2 2.3 69 122-194 102-170 (427)
114 TIGR01169 rplA_bact ribosomal 64.2 2.7 6.8E-05 22.0 0.8 99 128-235 43-182 (227)
115 PRK09490 metH B12-dependent me 62.7 12 0.0003 17.8 3.9 129 64-195 445-606 (1229)
116 PRK00094 gpsA NAD(P)H-dependen 62.1 10 0.00027 18.2 3.5 81 103-194 72-157 (325)
117 TIGR01369 CPSaseII_lrg carbamo 61.6 3.7 9.4E-05 21.1 1.1 63 129-191 241-322 (1089)
118 pfam00843 Arena_nucleocap Aren 61.2 13 0.00033 17.6 4.8 120 1-123 77-219 (534)
119 COG0223 Fmt Methionyl-tRNA for 60.3 8.9 0.00023 18.7 2.9 83 9-111 6-88 (307)
120 PRK07502 cyclohexadienyl dehyd 59.8 7.6 0.00019 19.1 2.4 52 62-115 19-79 (307)
121 pfam10727 Rossmann-like Rossma 59.7 13 0.00033 17.6 3.6 88 163-269 2-91 (111)
122 pfam02423 OCD_Mu_crystall Orni 59.5 14 0.00035 17.4 5.8 104 157-281 128-240 (312)
123 PRK00258 aroE shikimate 5-dehy 58.9 14 0.00036 17.4 4.6 169 52-227 10-195 (275)
124 PRK07631 amidophosphoribosyltr 58.8 14 0.00036 17.4 5.6 107 88-198 262-392 (475)
125 PRK09754 phenylpropionate diox 58.3 8.1 0.00021 18.9 2.4 66 123-194 112-177 (400)
126 PRK13982 bifunctional SbtC-lik 57.5 12 0.00031 17.8 3.2 91 132-222 229-340 (476)
127 TIGR01465 cobM_cbiF precorrin- 57.0 9.3 0.00024 18.5 2.5 77 103-190 25-105 (252)
128 COG0240 GpsA Glycerol-3-phosph 56.7 15 0.00039 17.1 4.8 13 51-63 75-87 (329)
129 PRK07589 ornithine cyclodeamin 56.5 9.9 0.00025 18.4 2.6 66 158-226 129-202 (346)
130 TIGR00450 thdF tRNA modificati 56.4 15 0.00039 17.1 5.3 89 137-230 197-318 (473)
131 PRK13512 coenzyme A disulfide 56.3 9.9 0.00025 18.4 2.6 65 126-194 117-181 (438)
132 PRK09246 amidophosphoribosyltr 55.8 12 0.00031 17.8 2.9 90 106-198 296-402 (503)
133 pfam06506 PrpR_N Propionate ca 55.1 13 0.00034 17.5 3.1 84 94-193 24-107 (169)
134 TIGR01035 hemA glutamyl-tRNA r 54.3 9.6 0.00024 18.5 2.2 108 150-281 175-305 (436)
135 cd00740 MeTr MeTr subgroup of 54.1 12 0.0003 17.9 2.6 46 64-112 83-129 (252)
136 COG4074 Mth H2-forming N5,N10- 52.9 12 0.00031 17.8 2.5 43 173-223 102-145 (343)
137 pfam03720 UDPG_MGDP_dh_C UDP-g 52.7 17 0.00044 16.8 3.3 59 164-226 11-70 (99)
138 PRK06035 3-hydroxyacyl-CoA deh 52.4 18 0.00046 16.7 4.5 19 172-190 166-184 (291)
139 PRK10422 lipopolysaccharide co 51.6 18 0.00047 16.6 3.7 21 212-232 257-277 (352)
140 PRK09123 amidophosphoribosyltr 50.7 17 0.00043 16.8 3.0 120 104-226 288-431 (480)
141 PRK06781 amidophosphoribosyltr 50.6 18 0.00047 16.6 3.2 90 106-198 286-392 (471)
142 cd01079 NAD_bind_m-THF_DH NAD 50.2 19 0.00049 16.5 4.0 105 138-264 33-154 (197)
143 cd01078 NAD_bind_H4MPT_DH NADP 50.0 19 0.00049 16.5 3.2 140 153-311 23-181 (194)
144 PRK07349 amidophosphoribosyltr 49.9 15 0.00038 17.2 2.6 93 103-198 308-416 (495)
145 PRK06019 phosphoribosylaminoim 49.9 20 0.0005 16.4 4.2 39 43-84 4-42 (377)
146 PRK08268 3-hydroxybutyryl-CoA 49.3 20 0.00051 16.4 4.8 17 12-28 31-47 (503)
147 COG1648 CysG Siroheme synthase 49.1 15 0.00038 17.2 2.5 39 153-194 7-45 (210)
148 PRK09424 pntA NAD(P) transhydr 49.0 20 0.00051 16.4 4.4 102 154-271 161-289 (510)
149 COG0677 WecC UDP-N-acetyl-D-ma 49.0 20 0.00052 16.3 3.9 13 210-222 381-393 (436)
150 PRK07847 amidophosphoribosyltr 48.9 16 0.00042 17.0 2.7 92 103-198 278-386 (489)
151 COG0486 ThdF Predicted GTPase 48.7 19 0.00049 16.5 3.0 64 155-223 214-302 (454)
152 KOG0069 consensus 48.7 20 0.00052 16.3 6.5 95 154-265 158-252 (336)
153 PRK01438 murD UDP-N-acetylmura 48.3 21 0.00053 16.3 3.2 15 278-292 447-461 (481)
154 PRK11579 putative oxidoreducta 47.8 21 0.00054 16.2 3.3 55 43-97 59-113 (346)
155 PRK12549 shikimate 5-dehydroge 47.5 21 0.00054 16.2 5.2 166 59-227 19-203 (284)
156 TIGR00993 3a0901s04IAP86 chlor 47.0 14 0.00035 17.4 2.1 21 270-290 261-281 (772)
157 cd05213 NAD_bind_Glutamyl_tRNA 46.8 22 0.00056 16.1 3.5 116 149-287 169-291 (311)
158 PRK06823 ornithine cyclodeamin 46.7 22 0.00056 16.1 3.1 106 158-285 128-242 (315)
159 PRK07272 amidophosphoribosyltr 46.3 22 0.00055 16.2 3.0 92 104-198 287-394 (484)
160 PRK05291 trmE tRNA modificatio 45.7 23 0.00058 16.0 3.2 64 156-224 214-302 (445)
161 PRK08291 ornithine cyclodeamin 45.7 21 0.00053 16.2 2.8 68 157-227 131-207 (330)
162 KOG0953 consensus 45.2 12 0.00031 17.8 1.6 15 52-66 105-119 (700)
163 PRK06141 ornithine cyclodeamin 45.0 19 0.0005 16.5 2.6 105 159-288 126-241 (313)
164 cd01065 NAD_bind_Shikimate_DH 45.0 22 0.00056 16.1 2.9 78 147-227 8-92 (155)
165 PRK07417 arogenate dehydrogena 44.8 19 0.00049 16.5 2.5 14 103-116 59-72 (280)
166 cd02812 PcrB_like PcrB_like pr 44.7 23 0.0006 15.9 6.3 161 66-230 19-210 (219)
167 TIGR00421 ubiX_pad polyprenyl 43.3 18 0.00046 16.7 2.2 44 246-289 125-170 (181)
168 pfam00551 Formyl_trans_N Formy 43.0 25 0.00064 15.8 3.2 15 95-109 72-86 (181)
169 COG0014 ProA Gamma-glutamyl ph 42.0 8.7 0.00022 18.7 0.4 122 9-136 65-228 (417)
170 cd05296 GH4_P_beta_glucosidase 41.5 14 0.00037 17.3 1.5 146 10-165 32-193 (419)
171 PRK09558 ushA bifunctional UDP 41.1 26 0.00065 15.7 2.7 85 72-166 75-171 (551)
172 COG2423 Predicted ornithine cy 40.8 26 0.00065 15.7 2.7 65 159-226 131-204 (330)
173 TIGR01692 HIBADH 3-hydroxyisob 40.6 13 0.00033 17.6 1.1 19 8-26 20-38 (290)
174 TIGR01546 GAPDH-II_archae glyc 40.6 20 0.0005 16.4 2.0 14 245-258 253-266 (335)
175 cd05293 LDH_1 A subgroup of L- 39.7 28 0.00071 15.4 5.0 19 128-148 76-94 (312)
176 PRK07819 3-hydroxybutyryl-CoA 39.7 28 0.00071 15.4 4.5 19 11-29 29-47 (284)
177 TIGR01505 tartro_sem_red 2-hyd 39.4 15 0.00037 17.3 1.2 147 85-251 39-235 (291)
178 PRK07530 3-hydroxybutyryl-CoA 39.0 29 0.00073 15.4 4.5 18 11-28 31-48 (292)
179 PRK08618 ornithine cyclodeamin 39.0 29 0.00073 15.4 2.7 99 159-282 128-238 (325)
180 TIGR01921 DAP-DH diaminopimela 38.7 18 0.00045 16.7 1.6 195 66-281 55-260 (326)
181 pfam00389 2-Hacid_dh D-isomer 38.7 29 0.00074 15.3 5.6 37 155-194 134-170 (313)
182 PRK08525 amidophosphoribosyltr 38.5 29 0.00074 15.3 3.0 91 104-198 277-384 (445)
183 PRK06199 ornithine cyclodeamin 38.5 24 0.00061 15.9 2.2 67 157-226 154-232 (379)
184 PRK06545 prephenate dehydrogen 38.4 22 0.00057 16.1 2.0 39 156-194 135-174 (357)
185 PRK07168 bifunctional uroporph 37.7 30 0.00076 15.2 4.4 58 137-195 200-262 (474)
186 PRK02006 murD UDP-N-acetylmura 37.6 30 0.00077 15.2 3.2 27 277-303 463-493 (501)
187 PRK01710 murD UDP-N-acetylmura 37.6 21 0.00054 16.2 1.8 52 42-101 10-61 (458)
188 COG0373 HemA Glutamyl-tRNA red 37.2 31 0.00078 15.2 4.2 102 150-273 170-280 (414)
189 cd06382 PBP1_iGluR_Kainate N-t 37.2 31 0.00078 15.2 5.5 23 140-166 117-139 (327)
190 PRK00005 fmt methionyl-tRNA fo 36.4 31 0.0008 15.1 3.4 77 9-112 5-88 (309)
191 TIGR00034 aroFGH phospho-2-deh 36.3 14 0.00036 17.4 0.8 106 20-148 64-200 (348)
192 pfam03721 UDPG_MGDP_dh_N UDP-g 35.8 29 0.00073 15.4 2.3 17 65-81 16-32 (185)
193 COG1486 CelF Alpha-galactosida 35.6 19 0.00049 16.5 1.4 126 10-151 35-187 (442)
194 PRK05793 amidophosphoribosyltr 35.3 33 0.00084 15.0 3.0 91 104-198 293-400 (472)
195 cd01979 Pchlide_reductase_N Pc 34.4 24 0.00062 15.8 1.7 75 117-193 111-189 (396)
196 KOG2711 consensus 34.4 34 0.00086 14.9 3.1 11 293-303 321-331 (372)
197 TIGR02992 ectoine_eutC ectoine 34.2 21 0.00053 16.2 1.4 20 205-224 182-201 (326)
198 PRK13656 trans-2-enoyl-CoA red 33.4 35 0.00089 14.8 3.1 62 46-108 67-137 (400)
199 pfam01861 DUF43 Protein of unk 32.6 36 0.00092 14.7 3.5 14 153-166 40-53 (243)
200 PRK09419 bifunctional 2',3'-cy 32.5 36 0.00092 14.7 4.1 12 154-165 189-200 (1260)
201 PRK12755 phospho-2-dehydro-3-d 32.5 36 0.00092 14.7 5.9 109 19-147 66-201 (352)
202 TIGR02254 YjjG/YfnB HAD superf 31.6 38 0.00096 14.6 2.5 130 59-199 69-214 (233)
203 COG3973 Superfamily I DNA and 31.2 38 0.00097 14.6 2.3 70 125-198 227-299 (747)
204 TIGR00185 rRNA_methyl_2 RNA me 30.9 36 0.00091 14.7 2.1 65 161-227 5-84 (161)
205 PRK09599 6-phosphogluconate de 30.0 40 0.001 14.4 4.1 36 156-194 128-167 (301)
206 COG1646 Predicted phosphate-bi 29.8 40 0.001 14.4 4.5 138 91-231 58-227 (240)
207 TIGR01283 nifE nitrogenase MoF 29.2 24 0.00061 15.9 1.0 91 104-200 259-377 (470)
208 cd05211 NAD_bind_Glu_Leu_Phe_V 29.1 41 0.0011 14.3 2.3 31 154-187 19-49 (217)
209 cd01075 NAD_bind_Leu_Phe_Val_D 28.9 42 0.0011 14.3 5.0 35 155-192 25-59 (200)
210 cd01337 MDH_glyoxysomal_mitoch 28.5 42 0.0011 14.3 4.7 11 137-147 117-127 (310)
211 PRK09261 phospho-2-dehydro-3-d 28.5 42 0.0011 14.3 4.8 109 19-147 65-200 (351)
212 COG2719 SpoVR Uncharacterized 28.0 43 0.0011 14.2 2.2 69 85-154 155-240 (495)
213 pfam10593 Z1 Z1 domain. This u 27.8 40 0.001 14.4 1.9 44 155-200 142-186 (231)
214 KOG0572 consensus 27.7 44 0.0011 14.2 2.8 89 106-197 294-399 (474)
215 PRK12550 shikimate 5-dehydroge 27.5 44 0.0011 14.2 2.8 151 65-227 28-189 (272)
216 pfam11339 DUF3141 Protein of u 27.1 32 0.00081 15.1 1.3 44 121-164 294-340 (581)
217 PRK07535 methyltetrahydrofolat 27.1 45 0.0011 14.1 3.3 117 66-186 32-153 (268)
218 PRK10355 xylF D-xylose transpo 26.7 46 0.0012 14.1 4.2 80 47-131 26-112 (330)
219 COG1794 RacX Aspartate racemas 26.5 35 0.0009 14.8 1.4 113 51-195 38-151 (230)
220 PRK04207 glyceraldehyde-3-phos 26.4 41 0.0011 14.3 1.8 88 91-185 69-159 (338)
221 PRK13958 N-(5'-phosphoribosyl) 26.2 46 0.0012 14.0 4.0 58 48-108 24-81 (207)
222 PRK05086 malate dehydrogenase; 26.1 47 0.0012 14.0 4.9 11 137-147 118-128 (312)
223 cd06313 PBP1_ABC_sugar_binding 26.1 47 0.0012 14.0 2.9 67 59-131 16-86 (272)
224 PRK12756 phospho-2-dehydro-3-d 25.7 47 0.0012 14.0 6.3 110 19-147 65-200 (349)
225 PRK02277 orotate phosphoribosy 25.4 48 0.0012 13.9 2.1 42 149-190 132-174 (201)
226 PRK10200 putative racemase; Pr 25.4 35 0.00089 14.8 1.2 87 88-194 61-151 (230)
227 TIGR01059 gyrB DNA gyrase, B s 25.0 15 0.00039 17.1 -0.6 73 98-181 48-129 (818)
228 PRK11199 tyrA bifunctional cho 24.8 49 0.0013 13.8 3.6 168 13-195 64-245 (374)
229 COG0686 Ald Alanine dehydrogen 24.8 49 0.0013 13.8 4.1 90 159-263 169-265 (371)
230 PRK08341 amidophosphoribosyltr 23.7 52 0.0013 13.7 2.6 88 106-198 274-378 (442)
231 cd03813 GT1_like_3 This family 23.7 52 0.0013 13.7 3.5 83 153-236 288-388 (475)
232 cd00468 HIT_like HIT family: H 23.6 52 0.0013 13.7 3.3 32 4-35 24-55 (86)
233 COG0334 GdhA Glutamate dehydro 23.5 52 0.0013 13.7 2.1 62 127-192 173-238 (411)
234 TIGR03376 glycerol3P_DH glycer 23.4 52 0.0013 13.7 2.6 43 92-136 74-120 (342)
235 PRK06407 ornithine cyclodeamin 23.2 53 0.0013 13.7 5.6 105 158-286 118-234 (302)
236 CHL00183 petJ cytochrome c553; 23.1 28 0.00072 15.4 0.4 27 266-293 81-107 (108)
237 COG0856 Orotate phosphoribosyl 23.0 50 0.0013 13.8 1.7 15 19-33 3-17 (203)
238 pfam01408 GFO_IDH_MocA Oxidore 22.8 54 0.0014 13.6 2.4 65 159-226 1-71 (120)
239 pfam10340 DUF2424 Protein of u 22.7 54 0.0014 13.6 2.4 57 136-192 172-233 (374)
240 PRK03369 murD UDP-N-acetylmura 22.7 54 0.0014 13.6 2.6 15 278-292 456-470 (487)
241 TIGR02320 PEP_mutase phosphoen 22.5 36 0.00091 14.7 0.8 110 144-267 56-185 (272)
242 COG3897 Predicted methyltransf 22.5 54 0.0014 13.6 3.5 76 147-226 131-215 (218)
243 PRK04148 hypothetical protein; 22.5 54 0.0014 13.6 2.2 75 149-229 8-89 (135)
244 cd01076 NAD_bind_1_Glu_DH NAD( 22.3 55 0.0014 13.5 2.3 31 155-188 28-58 (227)
245 cd01560 Thr-synth_2 Threonine 21.8 56 0.0014 13.5 3.4 62 6-74 58-121 (460)
246 PRK06443 chorismate mutase; Va 21.6 56 0.0014 13.5 1.7 25 170-194 113-137 (177)
247 cd01275 FHIT FHIT (fragile his 20.9 59 0.0015 13.3 3.2 25 5-29 41-65 (126)
248 CHL00194 ycf39 Ycf39; Provisio 20.8 59 0.0015 13.3 2.7 35 155-191 194-229 (319)
249 TIGR03646 YtoQ_fam YtoQ family 20.7 59 0.0015 13.3 5.7 103 160-278 2-125 (144)
250 COG1484 DnaC DNA replication p 20.7 57 0.0015 13.4 1.6 119 139-267 88-209 (254)
251 PRK03806 murD UDP-N-acetylmura 20.6 59 0.0015 13.3 3.1 15 278-292 408-422 (438)
252 cd06305 PBP1_methylthioribose_ 20.6 60 0.0015 13.3 2.5 68 59-131 16-86 (273)
253 TIGR01125 TIGR01125 MiaB-like 20.6 60 0.0015 13.3 2.6 33 210-242 317-349 (475)
254 cd01853 Toc34_like Toc34-like 20.5 60 0.0015 13.3 2.0 18 272-289 170-187 (249)
No 1
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=100.00 E-value=0 Score=766.77 Aligned_cols=296 Identities=27% Similarity=0.341 Sum_probs=280.6
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 741782238999999999999999964420487-----752128976999960787337899997987613521112333
Q gi|254780300|r 7 YNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNP-----STTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 7 k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~-----~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
||||++.|||++|+..||++|.++|+...++.. ....|.||++||||+|||||||+|||+||++||||++||+++
T Consensus 1 rhLL~l~Dl~~~E~~~ll~~a~~~K~~~~~~~~ndfqsn~~~L~GKtlAliFeK~STRTRvSFEvA~y~lGg~~lyL~~~ 80 (341)
T TIGR00658 1 RHLLSLADLSPEEIRELLQLAKKLKKGKKKGKENDFQSNEKKLKGKTLALIFEKPSTRTRVSFEVAAYQLGGQPLYLNPS 80 (341)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEECCCC
T ss_conf 96220025898899999999998645754487442000213234881666652698652100779998649821224875
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC--CCCCC
Q ss_conf 3210133342247999874136714652032100554200123421111234566312233222222201222--10001
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG--KISNL 159 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g--~l~~l 159 (316)
++|+++|||++|||||||+| +|+|++|...|..+++||+++|+| ||||+++ .+||||+|||++||+|++| .|+|+
T Consensus 81 ~~QlG~gEsi~DTARVLsRy-VD~I~~R~~~h~~v~~lA~yasVP-VINgLtD-~~HPcQ~LADllTI~E~~g~~~l~g~ 157 (341)
T TIGR00658 81 DLQLGRGESIKDTARVLSRY-VDGIMARVYKHEDVEELAKYASVP-VINGLTD-LFHPCQALADLLTIKEHFGEKKLKGV 157 (341)
T ss_pred CCEECCCCCCCCHHHHHCCE-EEEEEEECCCHHHHHHHHHHCCCC-EECCCCC-CCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 32003688700011020315-656777325537899998548985-4605568-55237999998889874679560000
Q ss_pred --------CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCE
Q ss_conf --------0010355443301334466420134205532775322211-----------212343300584560368622
Q gi|254780300|r 160 --------HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDV 220 (316)
Q Consensus 160 --------~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDv 220 (316)
|++|+||.+ |||+||++++++++|+++.+++|++|.|+. ..|+.++.++||.||++||||
T Consensus 158 nkGinsklk~vy~GDgR-NNVcnSL~la~a~~Gm~~~v~tP~gyeP~~~~v~~A~~~a~e~Gg~~~lt~Dp~eAv~gADv 236 (341)
T TIGR00658 158 NKGINSKLKVVYVGDGR-NNVCNSLLLAAAKLGMDVVVATPEGYEPDAEIVKKAKKIAKENGGSVELTHDPKEAVKGADV 236 (341)
T ss_pred CCCCCCCCEEEEECCCC-HHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCE
T ss_conf 03524421689973785-12688999999972854788788888878789999999997179859996377986128978
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHC-CCCCEEECCCCCCC------------------CCCCCHHHHCC
Q ss_conf 100011331233344445554202357588999837-99859955899876------------------87447679769
Q gi|254780300|r 221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYA-KKDALVMHPGPINR------------------NYEISSSVADG 281 (316)
Q Consensus 221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcLP~~R------------------g~Ev~~~v~d~ 281 (316)
||||.|.+|+.+++.++++.+.+++||||+++|+.| +|++||||||||+| |+|||+||+||
T Consensus 237 ~YTDVWvSMGe~e~~~~eR~~~F~PYQVN~~Ll~~aG~p~~~fMHCLPA~r~~~T~~G~~~AE~~~L~~G~EvTdeV~eg 316 (341)
T TIGR00658 237 IYTDVWVSMGEAEDKKEERLKIFRPYQVNEELLELAGKPEVIFMHCLPAHRDDETKLGKKIAEKYGLANGEEVTDEVIEG 316 (341)
T ss_pred EEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHCCC
T ss_conf 99741235698366788899836898878799841388981783378887575213678888754788881400867359
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9701686877569999999999977
Q gi|254780300|r 282 SQSIIQYQVEMGVAVRMAIIKELLE 306 (316)
Q Consensus 282 ~~s~v~~Qa~Nrl~~~~AlL~~~l~ 306 (316)
|+|+||+|||||||+|||||.++|+
T Consensus 317 ~~S~VfDqAENRlHaqKAvm~~~l~ 341 (341)
T TIGR00658 317 PHSIVFDQAENRLHAQKAVMVALLG 341 (341)
T ss_pred CCCEEHHHHHHHHHHHHHHHHHHHC
T ss_conf 9983130264479999999999819
No 2
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=0 Score=701.40 Aligned_cols=303 Identities=49% Similarity=0.755 Sum_probs=287.5
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333
Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
+.|+|||||++.||+++|+..||++|.++|+.+... ..+.|+||+++++|+|||||||+|||+||.+|||++++++++
T Consensus 2 n~~~~k~~lsi~Dls~~ei~~ll~~A~~~K~~~~~~--~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~ 79 (304)
T PRK00856 2 NPLKMKHLLSIEDLSREEIELLLDTAEQFKAVPRVK--KVPLLRGKTVANLFFEPSTRTRLSFELAAKRLGADVINFSAS 79 (304)
T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 988768808722199999999999999997332126--786568988999971587405788999998389669870666
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316)
++|++||||++||++|||+|++|+||+||+.++.+.++++++++| |||||||.++||||+|+|+|||+|.+|+++|+||
T Consensus 80 ~s~~~kgEsi~DTarvls~y~~D~iv~R~~~~~~~~~~a~~s~vP-VINagdg~~eHPtQaLaDl~Ti~e~~g~l~glki 158 (304)
T PRK00856 80 TSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAEKVNVP-VINAGDGSHQHPTQALLDLLTIREEFGRLEGLKV 158 (304)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 465568978999999999727979999168656999999868998-8979999776846999879999986387778769
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 10355443301334466420134205532775322211212343300584560368622100011331233344445554
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIRE 241 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~ 241 (316)
+|+||+.|+||+|||+.+++++|+++++++|++|.|++.. .++++++|+++|+++|||||++++|+|++......+.++
T Consensus 159 ~~vGD~~n~rv~~Sl~~~~~~~g~~~~~~~P~~~~p~~~~-~~~~~~~d~~~av~~aDvvy~trvq~Er~~~~~~~~~~~ 237 (304)
T PRK00856 159 AIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGIE-LGVRVHTDLEEVIEEADVVMMLRVQKERMDGGLLPSYEE 237 (304)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHC-CCEEEECCHHHHHCCCCEEEEEHHHHHHHCCCCCHHHHH
T ss_conf 9984787456799999999976986999778533884446-983998699999626989998557777611421036887
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2023575889998379985995589987687447679769970168687756999999999997781
Q gi|254780300|r 242 YKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQ 308 (316)
Q Consensus 242 ~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~ 308 (316)
++..||||.++|+.++++++||||||+|||+||+++|+|+|+|+||+|||||+|+|||||+++|+++
T Consensus 238 ~~~~y~v~~~~m~~a~~~ai~mHcLPa~Rg~Ei~~~V~d~~~s~v~~QaeNrl~~~~AvL~~llgg~ 304 (304)
T PRK00856 238 YHRQYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADGPQSRIFEQVTNGVAVRMAVLELLLGGR 304 (304)
T ss_pred HCCCEEECHHHHHCCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2552345899996079998998979987886037877579846799998715999999999986799
No 3
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=100.00 E-value=0 Score=678.19 Aligned_cols=304 Identities=41% Similarity=0.620 Sum_probs=286.0
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 77741782238999999999999999964420487752128976999960787337899997987613521112333321
Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA 84 (316)
Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~ 84 (316)
..||||+++|||++||+.||++|.++++.+.+.+...+.|+||+++++|+|||||||+|||+||++|||++++++.+++|
T Consensus 4 ~prH~L~l~dls~~ei~~ll~~A~~~~~~~~~~~~~~~~L~gk~la~lF~kpSTRTR~SFE~a~~~LGg~~i~l~~~~s~ 83 (310)
T PRK13814 4 LPLHLLNMRSLTRDHIEKLIQRANYFLTQGMEKNSVFETLKGHVVANLFFEPSTRTRNSFEIAAKRLGAMVLNPNLKISA 83 (310)
T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88443753219999999999999999986641477776679998999984687324999999999849980576644354
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 01333422479998741367146520321005542001234211112345663122332222222012221000100103
Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316)
Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316)
++||||++||++|+|+|++|++++||+.++.+.+++++++.|||||||+|.++||||+|+|+|||+|++|+++|++|+||
T Consensus 84 l~kgEsi~DTa~vls~~~~d~iv~R~~~~~~~~~la~~~s~~pvINag~~~~~HP~QaLaDl~Ti~E~~g~~~~l~ia~v 163 (310)
T PRK13814 84 ISKGETLFDTIKTLEAMGVYFFIVRHSENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKPHWNKLCVTII 163 (310)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 55797789999998741856999976874489999971788874768789877716999989999998397135668996
Q ss_pred CCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 554433013344664201342-0553277532221121234330058456036862210001133123334444555420
Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYK 243 (316)
Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~ 243 (316)
||+.||||++|++.++.++|+ ++++++|+++.|+...+..++.++++++++.++||||+++||.|+..... ..+.|.
T Consensus 164 GD~~~~~va~Sl~~~~~~~g~~~~~~~~P~~~~p~~~~~~~~~~~~~~~~a~~~aDvi~t~~~~~e~~~~~~--~~~~~~ 241 (310)
T PRK13814 164 GDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSV--DIDAFR 241 (310)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHCCHHHCCCCEEEEECCHHHHCCCCEEEECCCHHHHHCCHH--HHHHHH
T ss_conf 774246999999999997599835852800219166708854998141676547987997730653303255--399886
Q ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2357588999837998599558998768744767976997016868775699999999999778142
Q gi|254780300|r 244 HVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNK 310 (316)
Q Consensus 244 ~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~ 310 (316)
..||||.++|+.++++++||||||+|||+||++||+|+|+|+||+|||||+|+|||||+++|.+..|
T Consensus 242 ~~y~v~~~~l~~a~~dai~MHcLPa~Rg~EIt~eV~d~~~S~v~~QAeNrl~~q~AlL~~lL~~~~r 308 (310)
T PRK13814 242 GSFRLTPEKLYSAKPDAIVMHPGPVNREVEINSDVADNQQSVILQQVRNGVAMRMAVLELFLLRDFR 308 (310)
T ss_pred HCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5267189999618989899898989899865877736986759999972399999999999723255
No 4
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=676.61 Aligned_cols=309 Identities=28% Similarity=0.463 Sum_probs=281.4
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211-12333
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVI-NINTK 81 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i-~l~~~ 81 (316)
+|.+||||+++||+++||..||++|.++|+...+. ...+.|+||+++++|+|||||||+|||+||.+|||+++ +++++
T Consensus 2 ~l~grhlLsi~Dls~~ei~~ll~~A~~lk~~~~~~-~~~~~L~gk~la~lF~kpSTRTR~SFE~A~~~LGg~~~~~~~~~ 80 (338)
T PRK08192 2 QFEGSHILSVNQLDLDSIQTIFNVASRMMPYALRQ-KRTTVLDGAILGNLFFEPSTRTRVSFGCAFNLLGGHVRETTGMA 80 (338)
T ss_pred CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCC
T ss_conf 89987859700189999999999999998787478-87866899989999628974469999999998499860257833
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----CCCC
Q ss_conf 321013334224799987413671465203210055420012342111123456631223322222220122----2100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK----GKIS 157 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~----g~l~ 157 (316)
+||++||||++||++|+|+| +|+||+||+.++.+.++++++++| |||||+|.++||||+|+|+|||+|.+ |+++
T Consensus 81 ~s~l~kGEsi~DTarvls~y-~D~iviR~~~~~~~~e~a~~s~vP-VINa~~~~~~HPtQaLaDl~Ti~e~~~~~~~~l~ 158 (338)
T PRK08192 81 SSSLSKGESLYDTARVLSTY-SDVIAMRHPDAYSVKEFAEGSRVP-VINGGDGSNEHPTQALLDLFTIQKELAHAGRGID 158 (338)
T ss_pred CCCCCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHCCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 24467897899999998615-989999885100489987418987-8967889876827898889999999874089855
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCC-CCC------CCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 01001035544330133446642013-42055327753222-112------12343300584560368622100011331
Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTM-GARIRVIAPITLLP-KDI------SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~-g~~v~~~~P~~~~~-~~~------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
|++|+||||+.|+|+++|++.++..+ |+++++++|+++.| +.. .+..+++++|+++|+++|||||+++||.|
T Consensus 159 glkia~vGD~~~~r~~~s~~~ll~~~~g~~~~l~~P~~~~~p~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvy~~~~q~e 238 (338)
T PRK08192 159 GMHIAMVGDLKFGRTVHSLSRLLCMYKNISFTLISPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLTRIQEE 238 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECHHHHHCCCEEEEECCEEEC
T ss_conf 74899976777563899999999965598899989987789999999999849949997288897236849995754553
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHH-HCCCCCEEECCCCCC---CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2333444455542023575889998-379985995589987---687447679769970168687756999999999997
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLK-YAKKDALVMHPGPIN---RNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~-~a~~~ai~mHcLP~~---Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l 305 (316)
++... ...++|+.+||||.++|. .++++++||||||+| ||+||+++|+|+|+|+||+|||||||+|||||+++|
T Consensus 239 ~~~~~--~~~~~~~~~y~v~~~ll~~~ak~dai~MHcLP~n~~~rg~EIt~eV~d~p~S~vf~QAeNrl~~r~AlL~~lL 316 (338)
T PRK08192 239 RFPSQ--EEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSHPNLAIFRQADNGLLIRMALFALTL 316 (338)
T ss_pred CCCCH--HHHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 56577--8999997467137999983089999997999999997704837777569987379998730999999999972
Q ss_pred CCCCCCCCCCC
Q ss_conf 78142220129
Q gi|254780300|r 306 ENQNKITQKEL 316 (316)
Q Consensus 306 ~~~~~~~~~~~ 316 (316)
|..+++++||-
T Consensus 317 G~~d~~~~~~~ 327 (338)
T PRK08192 317 GVDDQLEKYEC 327 (338)
T ss_pred CCCCHHHHHCC
T ss_conf 99712212037
No 5
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=672.02 Aligned_cols=299 Identities=27% Similarity=0.356 Sum_probs=279.2
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
|.++.+||||++.||+++|+..||++|.++|+.++.... .. ..||+++|+|+|||||||+|||+||.+||||++||++
T Consensus 1 ~~~~~~rhfL~l~D~t~~El~~ll~~A~~lK~~~~~~~~-~~-~~gk~laliFeK~STRTR~SFe~a~~qlGg~~~~l~~ 78 (310)
T COG0078 1 MSNLAGRHFLSLLDFTPEELEALLDLAAELKAAKKAGKE-LK-LKGKNLALIFEKTSTRTRVSFEVAATQLGGHAIYLGP 78 (310)
T ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCC-CC-CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 986643330405209999999999999999874515874-25-6896599996489840454499999976896487088
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33210133342247999874136714652032100554200123421111234566312233222222201222100010
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLH 160 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ 160 (316)
+++|+++|||++|||+|||+| +|+|++|++.+..++++|+++++| |||++++. .||||+|||++||+|++|.++|+|
T Consensus 79 ~~~Qlgr~Esi~DTArVLsr~-~D~I~~R~~~~~~v~~lA~~s~VP-ViNgLtD~-~HP~Q~LADl~Ti~E~~g~l~g~k 155 (310)
T COG0078 79 GDSQLGRGESIKDTARVLSRM-VDAIMIRGFSHETLEELAKYSGVP-VINGLTDE-FHPCQALADLMTIKEHFGSLKGLK 155 (310)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HHEEEEECCCHHHHHHHHHHCCCC-EECCCCCC-CCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 755267899678899999855-025778535489999999727996-67254566-681899999999999638666857
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 010355443301334466420134205532775322211-----------212343300584560368622100011331
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
++|+||. |||+||++.+++++|+++++++|++|.|+. .+++++++++|+++|+++||||||+.|.+|
T Consensus 156 ~a~vGDg--NNv~~Sl~~~~a~~G~dv~ia~P~~~~p~~~~~~~a~~~a~~sg~~i~~t~d~~eAv~gADvvyTDvWvSM 233 (310)
T COG0078 156 LAYVGDG--NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSM 233 (310)
T ss_pred EEEECCC--CHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECCCCCC
T ss_conf 9997676--36999999999982986899789867869899999999998539848986398898578999983676567
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23334444555420235758899983799859955899876874476797699701686877569999999999977
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLE 306 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~ 306 (316)
+...+.++....+..+||||+++|++|+++++||||||++||+|||++|+|||+|++|+|||||||+|||||.++|+
T Consensus 234 Gee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~dg~~svvfdeAENRlH~qKAvl~~~l~ 310 (310)
T COG0078 234 GEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVFEGPASVVFDEAENRLHTQKAVLAALLG 310 (310)
T ss_pred CCHHHHHHHHHHHCCCCEECHHHHHHCCCCEEEEECCCCCCCCCCCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 62234078888537785357999950379828974788777871579895787514730632108999999999639
No 6
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=100.00 E-value=0 Score=659.74 Aligned_cols=302 Identities=23% Similarity=0.280 Sum_probs=279.6
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
|++|++||||+++||+++||..||++|.++|+.+... ...+.|+||+++++|+|||||||+|||+|+.+|||+++++++
T Consensus 1 mn~~~~k~~l~~~Dls~~ei~~il~~A~~lK~~~~~~-~~~~~L~gk~i~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~ 79 (334)
T PRK03515 1 MNQFYQKHFLKLLDFTPAELNALLQLAAKLKADKKSG-KEEQKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGP 79 (334)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9988788847601199999999999999998676548-877567998899996488703799999999982992999677
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCC
Q ss_conf 3321013334224799987413671465203210055420012342111123456631223322222220122--21000
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK--GKISN 158 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~--g~l~~ 158 (316)
+++|++||||++||++|||+| +|+|++|++.++.+.++++++++| ||| |+|.++||||+|+|+|||+|++ |+++|
T Consensus 80 ~~s~~~kgEsl~DTarvLs~~-~D~Iv~R~~~~~~~~~~a~~s~vP-VIN-g~~~~~HPtQaL~Dl~Ti~E~~~~~~l~~ 156 (334)
T PRK03515 80 SGSQIGHKESIKDTARVLGRM-YDGIQYRGYGQEIVETLAEYAGVP-VWN-GLTNEFHPTQLLADLLTMQEHLPGKAFNE 156 (334)
T ss_pred CCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 534366898789999999961-887999675548999999876987-664-89888786799999999999856897566
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 10010355443301334466420134205532775322211-----------2123433005845603686221000113
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
++|+||||+ +|||++|++.+++++|+++++++|++++|+. ..+..+.+++|+++|+++|||||++.|.
T Consensus 157 lkia~vGD~-~nnv~~Sl~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDviytd~w~ 235 (334)
T PRK03515 157 MTLAYAGDA-RNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECQALAQKNGGNITLTEDIAEGVKGADFIYTDVWV 235 (334)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCEEEEEHHH
T ss_conf 489995787-6545899999998549749997797568887899999999997199189960456551578788730213
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHH
Q ss_conf 31233344445554202357588999837-998599558998------------------76874476797699701686
Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYA-KKDALVMHPGPI------------------NRNYEISSSVADGSQSIIQY 288 (316)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcLP~------------------~Rg~Ev~~~v~d~~~s~v~~ 288 (316)
+++..........+.+.+||||.++|+.+ +++++||||||+ |||+||+++|+|+|+|+||+
T Consensus 236 smg~~~~~~~er~~~~~~y~v~~~l~~~~~~~~~~~mHclPa~~~~~~~~~~~~~~~~p~~rG~EI~~~V~d~~~S~i~~ 315 (334)
T PRK03515 236 SMGEPKEKWAERIALLRDYQVNSKMMQLTGNPQVKFLHCLPAFHDDQTTLGKKMAEEYGLHGGMEVTDEVFESAASIVFD 315 (334)
T ss_pred HCCCHHHHHHHHHHHHHCCEECHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHH
T ss_conf 22324666898987612525249999622799908957888775211100022202478888618788885788646999
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 8775699999999999778
Q gi|254780300|r 289 QVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 289 Qa~Nrl~~~~AlL~~~l~~ 307 (316)
|||||+|+|||||.++|+.
T Consensus 316 QaeNrl~~~~AvL~~~L~k 334 (334)
T PRK03515 316 QAENRLHTIKAVMVATLSK 334 (334)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9870599999999998667
No 7
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=100.00 E-value=0 Score=659.69 Aligned_cols=302 Identities=23% Similarity=0.278 Sum_probs=279.2
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
|++|++||||+++||+++||+.||++|.++|+.+... +....|+||+++++|+|||||||+|||+|+.+|||+++++++
T Consensus 1 m~~~~~kh~L~i~dls~~ei~~il~~A~~~k~~~~~~-~~~~~L~gK~v~~lF~e~STRTR~SFE~A~~~LGg~~i~l~~ 79 (334)
T PRK12562 1 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKNG-KEVARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGP 79 (334)
T ss_pred CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999888857710069999999999999998666458-867678999899996789704799999999985997898587
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCC
Q ss_conf 3321013334224799987413671465203210055420012342111123456631223322222220122--21000
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK--GKISN 158 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~--g~l~~ 158 (316)
++||++||||++||++|||+| +|+|++|++.++.+.++++++++| ||| |+|.++||||+|+|+|||+|++ +.++|
T Consensus 80 ~~s~~~kgEsl~Dt~~vLs~~-~D~iv~R~~~~~~~~~la~~s~vP-VIN-g~~~~~HPtQaL~Dl~Ti~E~~~g~~l~~ 156 (334)
T PRK12562 80 SGSQIGHKESIKDTARVLGRM-YDGIQYRGHGQEVVETLAEYAGVP-VWN-GLTNEFHPTQLLADLLTMQEHLPGKAFNE 156 (334)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 645278998889999999860-777897355738999999975999-888-99877671799999999999846898677
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 10010355443301334466420134205532775322211-----------2123433005845603686221000113
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
++|+|+||+ +|||+||++.+++++|+++++++|+++.|+. ..+..+++++|+++|+++|||||+++|.
T Consensus 157 l~i~~vGD~-~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~ 235 (334)
T PRK12562 157 MTLVYAGDA-RNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWV 235 (334)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEEHHH
T ss_conf 189996888-6635799999999749869997897668888999999999997099289984688870578789864265
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHH
Q ss_conf 31233344445554202357588999837-998599558998------------------76874476797699701686
Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYA-KKDALVMHPGPI------------------NRNYEISSSVADGSQSIIQY 288 (316)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcLP~------------------~Rg~Ev~~~v~d~~~s~v~~ 288 (316)
+++...+......+.+.+||||.++|+.+ +++++||||||+ |||+||+++|+|+|+|+||+
T Consensus 236 sm~~~~e~~~e~~~~~~~y~v~~~~~~~~~~~~~~~mHclPa~r~~~~~~~~~~~~~~~~~RG~EIt~~V~d~~~S~i~~ 315 (334)
T PRK12562 236 SMGEPKEKWAERIALLRDYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAAEFGLHGGMEVTDEVFESPASIVFD 315 (334)
T ss_pred HCCCHHHHHHHHHHHHHCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHH
T ss_conf 52546677899998730862259999621899919958998887322110012200257888728568885888666999
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 8775699999999999778
Q gi|254780300|r 289 QVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 289 Qa~Nrl~~~~AlL~~~l~~ 307 (316)
||+||+|+|||||.++|+.
T Consensus 316 QaeNrl~vr~AvL~~~Lgk 334 (334)
T PRK12562 316 QAENRMHTIKAVMVATLAK 334 (334)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9871399999999998575
No 8
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=655.63 Aligned_cols=302 Identities=24% Similarity=0.295 Sum_probs=278.8
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
|+++.+||||+++||+++||+.||++|.++|+.+.... ....|+||+++++|+|||||||+|||+|+.+|||+++++++
T Consensus 1 m~~l~~rh~l~~~dls~~ei~~il~~A~~~k~~~~~~~-~~~~L~gk~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~ 79 (332)
T PRK04284 1 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYAGT-EKPMLKGKNIALLFEKDSTRTRCAFEVAAHDQGAHVTYLGP 79 (332)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 97676888687110899999999999999975554588-78678999899996379720699999999985996898488
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 33210133342247999874136714652032100554200123421111234566312233222222201222-10001
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG-KISNL 159 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-~l~~l 159 (316)
++||++||||++||++|||+| .|+|++|++.++.+.++++++++| ||| |+|.++||||+|+|++||+|.+| +++|+
T Consensus 80 ~~s~~~kgEsi~DT~~vls~~-~D~iv~R~~~~~~~~~~a~~s~vP-ViN-g~~~~~HPtQ~L~D~~Ti~E~~~~~~~~l 156 (332)
T PRK04284 80 TGSQMGKKETTKDTARVLGGM-YDGIEYRGFSQRTVETLAEYSGVP-VWN-GLTDEDHPTQVLADFLTAKEVLKKPYADI 156 (332)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 645278877899999999962-888999534618999999867999-886-89987772689988899999713665672
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 0010355443301334466420134205532775322211-----------21234330058456036862210001133
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
+|+||||.. |||+||++.+++++|+++++++|++|.|.+ ..+..+++++|+++|+++|||||+++|++
T Consensus 157 kva~vGD~~-nnVa~S~~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~av~~aDviytd~w~s 235 (332)
T PRK04284 157 NFTYVGDGR-NNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVS 235 (332)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEEEEE
T ss_conf 899967988-6511579999997599379975855588999999999999971990899514988852588998764431
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCC-CCCEEECCCCCC-----------------CCCCCCHHHHCCCCCHHHHHH
Q ss_conf 12333444455542023575889998379-985995589987-----------------687447679769970168687
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKYAK-KDALVMHPGPIN-----------------RNYEISSSVADGSQSIIQYQV 290 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~a~-~~ai~mHcLP~~-----------------Rg~Ev~~~v~d~~~s~v~~Qa 290 (316)
++...+......+++.+||||+++|+.++ ++++||||||++ ||+||+++|+|+|+|+||+||
T Consensus 236 ~~~~~~~~~~r~~~~~~y~v~~elm~~~~~~~~ifmHcLPa~~~~~~~~g~~~~~~~~~Rg~EIt~eV~d~~~S~if~QA 315 (332)
T PRK04284 236 MGEPDEVWKERIELLKPYQVTKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGLREMEVTDEVFESKASVVFQEA 315 (332)
T ss_pred CCCCHHHHHHHHHHHHCCEECHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEECHHHHCCCCCEEHHHH
T ss_conf 57703557888866417477399997458989499788888875443223000003488686877889579874001085
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 75699999999999778
Q gi|254780300|r 291 EMGVAVRMAIIKELLEN 307 (316)
Q Consensus 291 ~Nrl~~~~AlL~~~l~~ 307 (316)
|||+|+|||||.++||.
T Consensus 316 eNrl~~~~AlL~~~LG~ 332 (332)
T PRK04284 316 ENRMHTIKAVMVATLGE 332 (332)
T ss_pred HCCHHHHHHHHHHHHCC
T ss_conf 44099999999997088
No 9
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=651.65 Aligned_cols=301 Identities=24% Similarity=0.272 Sum_probs=273.1
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77774178223899999999999999996442048775212897699996078733789999798761352111233332
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNS 83 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s 83 (316)
+++||||+++||+++||..||++|.++|+.+.... ....|+||+++++|+|||||||+|||+|+.+|||+++++++.++
T Consensus 2 ~k~kh~L~~~Dls~~ei~~ll~~A~~~K~~~~~~~-~~~~L~gk~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~~~~~ 80 (341)
T PRK02255 2 NKKRDFIDTQDYSKEEILYMIDLGLKLKEAIKNGA-YPQLLKNKSLGMIFEQPSTRTRVSFETAMTQLGGHAQYLAPGQI 80 (341)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 98756472221999999999999999987775588-87557999899996789710799999999985997998276544
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCCCCCC
Q ss_conf 1013334224799987413671465203210055420012342111123456631223322222220122---2100010
Q gi|254780300|r 84 AMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK---GKISNLH 160 (316)
Q Consensus 84 ~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~---g~l~~l~ 160 (316)
|++||||++||++|+|+| +|+||+|++.++.+.++++++++| ||| |+|..+||||+|+|+|||+|++ |+++|++
T Consensus 81 sl~kgEsl~DT~~vls~~-~D~iviR~~~~~~~~~la~~~~vP-VIN-g~~~~~HPtQaL~Dl~Ti~e~~~~~~~l~glk 157 (341)
T PRK02255 81 HLGGHESIEDTARVLSRM-VDIIMARVLRHQTVVELAKYATVP-VIN-GMSDYNHPTQELGDVFTMLEHLPAGKKLEDCK 157 (341)
T ss_pred CCCCCCCHHHHHHHHHHH-CCEEEEEECCCHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 578876699999999863-788999934846799999867999-897-89988772789998999999860179845656
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 010355443301334466420134205532775322211-----------212343300584560368622100011331
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
|+|||| ++||+||++.+++++|+++++++|+++.+.. ..+..+++++|++++++++||||+++|.++
T Consensus 158 va~vGD--~~nv~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~w~~~ 235 (341)
T PRK02255 158 VVFVGD--ATQVCSSLMFITTKMGMDFVHFGPKGFQLPEEHLAIARENCEVSGGSVLVTDDADEAVKDADFIYTDVWYGL 235 (341)
T ss_pred EEEECC--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEHHHHHH
T ss_conf 887268--534488999999975998999879746899999999999999739979999788887257987851078886
Q ss_pred HHHHHH-HHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 233344-4455542023575889998379985995589987687447679769970168687756999999999997781
Q gi|254780300|r 230 RIPRSL-IPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQ 308 (316)
Q Consensus 230 ~~~~~~-~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~ 308 (316)
...+.. ......|+..||||+++|+.++++++||||||+|||+||+++|+|+|+|+||+|||||+|+|||||.|+|...
T Consensus 236 ~~~~~~~~~~~~~~~~~y~v~~~~m~~a~~~ai~MHplPa~Rg~EIs~eV~d~p~S~i~~QaeNgl~vrmAlL~~lL~~~ 315 (341)
T PRK02255 236 YEQELSEEERMKIFYPKYQVNPELMAKAGPHAKFMHCLPASRGEEVTDEVMDSPQSIIFDEAENRLTAMRALLVYFLNPY 315 (341)
T ss_pred HHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 32165589998763446577799994589898998999898887307788589987799999730999999999984877
Q ss_pred CC
Q ss_conf 42
Q gi|254780300|r 309 NK 310 (316)
Q Consensus 309 ~~ 310 (316)
-+
T Consensus 316 ~~ 317 (341)
T PRK02255 316 IK 317 (341)
T ss_pred CC
T ss_conf 76
No 10
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=100.00 E-value=0 Score=651.06 Aligned_cols=299 Identities=23% Similarity=0.293 Sum_probs=274.2
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316)
++++||||+++||+++||..||++|.++|+.+.... ..+.|+||+++++|+|||||||+|||+|+.+|||+++++++++
T Consensus 4 ~l~~kh~L~~~dls~~ei~~il~~A~~~k~~~~~~~-~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ 82 (331)
T PRK02102 4 NLKGRSFLKLLDFTPAEIEYLIDLSIELKAAKKAGI-EHQYLKGKNIALIFEKTSTRTRCAFEVAAIDLGAHVTYLGPND 82 (331)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 998998185000999999999999999987664588-7766799989999558973059999999998599099578755
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 21013334224799987413671465203210055420012342111123456631223322222220122210001001
Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA 162 (316)
Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316)
||++||||++||++|||+| +|+|++|++.++.+.++++++++| ||||++ ..+||||+|+|++||+|++|+++|++|+
T Consensus 83 s~~~kGEs~~Dt~~~Ls~~-~D~iviR~~~~~~~~~~a~~~~vP-VIN~~~-~~~HPtQ~L~Dl~Ti~e~~g~l~gl~i~ 159 (331)
T PRK02102 83 IQLGKKESMEDTARVLGRM-YDGIEYRGFSQEIVEELAKYSGVP-VWNGLT-DEWHPTQMLADFMTMKEHFGPLKGLKLA 159 (331)
T ss_pred CCCCCCCCHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHCCCC-EECCCC-CCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6377898989999999975-167899627728999999747986-454888-7648799999999999983875677389
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH
Q ss_conf 0355443301334466420134205532775322211-----------21234330058456036862210001133123
Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316)
Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316)
||||. +|||+||++.+++++|+++++++|++|.|+. ..+..+++++|+++|+++|||||++.|.++..
T Consensus 160 ~vGD~-~nnVa~S~~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDVvytdvw~sm~~ 238 (331)
T PRK02102 160 YLGDG-RNNMANSLLVGGAKLGMDVRICAPKSLWPEEELVAQAKEIAKETGAKITITEDVEEAVKGADVIYTDVWVSMGE 238 (331)
T ss_pred EECCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHCCCCEEEEEHHHCCCH
T ss_conf 97887-64246689999985598599975864488979999999999982993899956666633576565303322334
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHC-CCCCEEECCCCC-----------------CCCCCCCHHHHCCCCCHHHHHHHHH
Q ss_conf 3344445554202357588999837-998599558998-----------------7687447679769970168687756
Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYA-KKDALVMHPGPI-----------------NRNYEISSSVADGSQSIIQYQVEMG 293 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcLP~-----------------~Rg~Ev~~~v~d~~~s~v~~Qa~Nr 293 (316)
... .+...+++.+||||.++|+.+ |++++||||||+ +||+||+++|+|+|+|+||+|||||
T Consensus 239 ~~~-~~~r~~~~~~y~v~~~l~~~a~k~~ai~MH~LPa~~n~~~~~~~~~~~~~~~RG~EI~~~V~d~p~S~i~~QaeNr 317 (331)
T PRK02102 239 EEK-WEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPAFHDTETKVGKEIAEKYGLKGLEVTDEVFESKYSIVFDEAENR 317 (331)
T ss_pred HHH-HHHHHHHHCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEECHHHHCCCCCCHHHHHHHH
T ss_conf 777-9999987407637899997347999489734877532232100222013577753866888488763025477521
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 99999999999778
Q gi|254780300|r 294 VAVRMAIIKELLEN 307 (316)
Q Consensus 294 l~~~~AlL~~~l~~ 307 (316)
+|+|||||+++||+
T Consensus 318 l~~r~AvL~~~LGd 331 (331)
T PRK02102 318 MHTIKAVMVATLGD 331 (331)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998478
No 11
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=647.20 Aligned_cols=301 Identities=24% Similarity=0.303 Sum_probs=274.6
Q ss_pred CC-CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99-77777417822389999999999999999644204877521289769999607873378999979876135211123
Q gi|254780300|r 1 MY-SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79 (316)
Q Consensus 1 m~-~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~ 79 (316)
|. ++.+||||++.||+++||..||++|.++|+.+.... ....|+||+++++|+|||||||+|||+|+.+|||++++++
T Consensus 1 m~~~l~~rhlL~~~d~s~~ei~~il~~A~~~K~~~~~~~-~~~~L~gK~v~~lF~epSTRTR~SFE~A~~~LGg~~i~l~ 79 (334)
T PRK01713 1 MAFNLKNRHLLSLVNHTEREIKYLLDLSRDLKRAKYAGT-EQQRLKGKNIALIFEKTSTRTRCAFEVAAYDQGAQVTYID 79 (334)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999998387000999999999999999986652688-7877899989998479962689999999998599099847
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CCC
Q ss_conf 3332101333422479998741367146520321005542001234211112345663122332222222012221-000
Q gi|254780300|r 80 TKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGK-ISN 158 (316)
Q Consensus 80 ~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~-l~~ 158 (316)
+++||++||||++||++|+|+| +|+|++|++.++.+.++++++++| ||| |+|.++||||+|+|+|||+|++|. ++|
T Consensus 80 ~~~s~~~kgEsl~Dta~vls~~-~D~iv~R~~~~~~~~~~a~~~~vP-VIN-g~~~~~HPtQ~LaDl~Ti~E~~~~~l~g 156 (334)
T PRK01713 80 PTSSQIGHKESMKDTARVLGRM-YDAIEYRGFKQSIVNELAKYAGVP-VFN-GLTDEFHPTQMLADVLTMIEHCEKPLSE 156 (334)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-CCEEEEECCCHHHHHHHHHHCCCC-EEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5124578998999999999962-858999546728999999865998-893-8978777589998899999984165467
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 100103554433013344664201342055327753222112-----------123433005845603686221000113
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
++|+|+||+ +|||++|++.+++++|+++++++|++|.|++. .+..+++++|+++|+++|||||++.|.
T Consensus 157 l~ia~vGD~-~nnv~~S~~~~~~~lG~~v~i~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~ 235 (334)
T PRK01713 157 ISYVYIGDA-RNNMGNSLLLIGAKLGMDVRICAPKALLPEDSLVEMCEKFAKESGARITVTDDIDTAVKGVDFVHTDVWV 235 (334)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHCCCCEEEEEEEE
T ss_conf 499993897-5418899999999779979998897658788999999999997199089960788885678689876676
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHH-CCCCCEEECCCCC-------------------CCCCCCCHHHHCCCCCHHH
Q ss_conf 3123334444555420235758899983-7998599558998-------------------7687447679769970168
Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKY-AKKDALVMHPGPI-------------------NRNYEISSSVADGSQSIIQ 287 (316)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~-a~~~ai~mHcLP~-------------------~Rg~Ev~~~v~d~~~s~v~ 287 (316)
+++.+.+.+....+.+.+||||+++|+. ++++++||||||+ +||+||+++|+|+|+|+||
T Consensus 236 smg~~~~~~~er~~~~~~y~v~~elm~~~~~~~~~fmHcLPa~~~~e~~~~~~~~~~~P~~~rG~EIt~~V~d~p~S~if 315 (334)
T PRK01713 236 SMGEPLETWGERIDLLMPYQVTPELMKRTGNPKVKFMHCLPAFHNSETKVGRQIAEKYPALANGIEVTEEVFESPMNIAF 315 (334)
T ss_pred ECCCHHHHHHHHHHHHCCCEEHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEECHHHHCCCCCCHH
T ss_conf 36645777889987751783629999752899929968886665310000024565268887872865899688987326
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 6877569999999999977
Q gi|254780300|r 288 YQVEMGVAVRMAIIKELLE 306 (316)
Q Consensus 288 ~Qa~Nrl~~~~AlL~~~l~ 306 (316)
+|||||+|+|||||.++|.
T Consensus 316 ~QAeNrlh~~kAvL~~~La 334 (334)
T PRK01713 316 EQAENRMHTIKAVMVASLA 334 (334)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 8987559999999999869
No 12
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=646.87 Aligned_cols=300 Identities=28% Similarity=0.358 Sum_probs=272.7
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333
Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
..+.+||||+++||+++||+.||++|.++|+.+.+... .++|+||+++++|+|||||||+|||+|+.+|||+++++++.
T Consensus 1 ~~l~~k~llsi~dls~~~i~~ll~~A~~~k~~~~~~~~-~~~L~gk~v~~lF~epSTRTr~SFe~A~~~LGg~~i~~~~~ 79 (308)
T PRK00779 1 TKLMGRHFLSLSDLTPEELRELLELAAELKAKRKAGEL-YKPLKGKTLAMIFEKPSTRTRVSFEVGMAQLGGHAIFLSPR 79 (308)
T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf 99888785860009999999999999999866645876-76689988999970687425573999886289389966876
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316)
+|+++||||++||++|+++| +|++|+|++.++.+.++++++++| ||||+.+ ++||||+|+|+|||+|++|+++|++|
T Consensus 80 ~ss~~kgEsl~Dt~~~l~~~-~D~iviR~~~~~~~~~~a~~~~vP-VINa~~d-~~HPtQaL~Dl~Ti~e~~g~l~gl~i 156 (308)
T PRK00779 80 DTQLGRGEPIEDTARVLSRY-VDAIMIRTFEHETLEELAEYSTVP-VINGLTD-LSHPCQILADLLTIYEHRGSIKGKTV 156 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHH-CCEEEEECCCCCHHHHHHHHCCCC-EEECCCC-CCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 56567897899999999854-779999324301189998748987-8967888-76738999999999998386778759
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC--------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH
Q ss_conf 10355443301334466420134205532775322211--------2123433005845603686221000113312333
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD--------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316)
+|||| ++||+||++.++.++|+++++++|+++.|.. .....+++++|++++++++||||++.|.++....
T Consensus 157 ~~vGD--~~nV~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviytd~w~sm~~~~ 234 (308)
T PRK00779 157 AWVGD--GNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVAKARAIAEASIEVTHDPEEAVKGADVVYTDVWVSMGQEA 234 (308)
T ss_pred EEECC--CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 99838--7453999999999779989998883027899999999974689589983999996259999850410255378
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 444455542023575889998379985995589987687447679769970168687756999999999997781
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQ 308 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~ 308 (316)
.. ....+.+.+||||.++|+.++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+|+||++
T Consensus 235 ~~-~~~~~~~~~y~vt~~~l~~ak~~~ivMHplP~~Rg~EI~~~V~d~p~s~i~~Qa~Ngl~vrmAiL~~lLgg~ 308 (308)
T PRK00779 235 EA-EERLKAFAPYQVNAELMALAKPDAIFMHCLPAHRGEEVTDEVIDGPQSVVWDEAENRLHAQKALLAWLLGGR 308 (308)
T ss_pred HH-HHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 99-999987653565899997269998997989888886366767569865699998605999999999985799
No 13
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=100.00 E-value=0 Score=645.02 Aligned_cols=300 Identities=36% Similarity=0.538 Sum_probs=279.4
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE--EEECCCCHHHHHHHHHHHHHCC--CCCCCCC-C
Q ss_conf 741782238999999999999999964420487752128976999--9607873378999979876135--2111233-3
Q gi|254780300|r 7 YNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQIN--LFLETSTRTQTSFEVAGKLLGV--HVININT-K 81 (316)
Q Consensus 7 k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~--lF~kpStRTR~SFe~A~~~LGg--~~i~l~~-~ 81 (316)
||+|+++||+++||+.||+.|.++++.+....+....|.||++++ +|||||||||+|||+||+|||| .++.|++ +
T Consensus 1 rhli~i~Dl~~Eei~~lL~~A~~l~~~~~~~~~~~~~L~gKi~a~YilFFEPSTRTR~SFE~A~KRLGgPn~v~~~~~~~ 80 (336)
T TIGR00670 1 RHLISISDLSREEIELLLETAEELEQVASGEKKLKEALKGKIVANYILFFEPSTRTRLSFETAMKRLGGPNDVVNFSDSE 80 (336)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 96223155785569999999999986315766215866397799999986078550135889888727985456225563
Q ss_pred CCCCCCCCCCCCHHHHHHHHC-CCCEEEECCC----CCHHHHHHCCCC----CCC-CCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 321013334224799987413-6714652032----100554200123----421-111234566312233222222201
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALR-PNIIVIRHPY----SGAVNSLMHKIK----GPS-IINAGDGTHEHPSQALLDAFAIRH 151 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~-~d~iv~R~~~----~~~~~~~a~~~s----~pp-VINag~~~~~HP~Q~LaDl~Ti~e 151 (316)
+||++||||+.||++||++|+ +|+||+||+. .++....|+.++ .+| |||||||.++||||+|+|+|||++
T Consensus 81 ~sS~~KGEtL~DTi~~~~~y~D~D~iViRH~~~GvCegaar~~ae~~~R~~~~vPsviNAGDG~~qHPTQ~LLDLyTi~~ 160 (336)
T TIGR00670 81 TSSVAKGETLADTIKTLSAYGDSDAIVIRHPLEGVCEGAARLAAEVSDRLGIEVPSVINAGDGSGQHPTQTLLDLYTIYE 160 (336)
T ss_pred CCCHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 41121054478899988540475569983586541346889998863110457871663687878797534788999998
Q ss_pred CCC-------CCCCCCEEECCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCC-CCCCC------CCCCCCCCCCHHHCCC
Q ss_conf 222-------100010010355443301334466420134-20553277532-22112------1234330058456036
Q gi|254780300|r 152 FKG-------KISNLHIAICGDILHSRVARSDIMLLNTMG-ARIRVIAPITL-LPKDI------SNMGVEVFHDMQKGLK 216 (316)
Q Consensus 152 ~~g-------~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g-~~v~~~~P~~~-~~~~~------~~~~~~~~~d~~ea~~ 216 (316)
.|| .++|+|||++||++||||+||++.++++|| +++.+++|+.+ +|+++ .|..+.+++.++|++.
T Consensus 161 ~fGPDnP~l~~~~Gl~iA~vGDlkygRtvhS~~~~L~~f~~~~v~l~sP~~LrmP~~~~e~~~~~G~~~~~~~~l~e~~~ 240 (336)
T TIGR00670 161 EFGPDNPALERLDGLKIALVGDLKYGRTVHSLIKALALFGNAEVYLISPEELRMPKEILEDLKAKGVKVRETESLEEVID 240 (336)
T ss_pred HHCCCCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCHHHHHHHHHHCCCEEEEEEEHHHHHC
T ss_conf 71888630322288579998431202476678899865189569986772430617889998528962899522434421
Q ss_pred CCCEE---EEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC--CEEECCCCCCCCCCCCHHHHCCCCCHHHH-HH
Q ss_conf 86221---00011331233344445554202357588999837998--59955899876874476797699701686-87
Q gi|254780300|r 217 NVDVI---MILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKD--ALVMHPGPINRNYEISSSVADGSQSIIQY-QV 290 (316)
Q Consensus 217 ~aDvv---~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~--ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~-Qa 290 (316)
.+||+ |++|+|+||++.....+.++|+..|+|+.+.++.++++ +|||||||+||++||+.+|+++|++.||+ ||
T Consensus 241 ~~DVlkiWY~tRiQkER~~~~d~~ey~~~~~~Y~i~~~~L~~~~~~~e~ivlHPlPv~RvdEI~~~vd~~~~~~~f~~Q~ 320 (336)
T TIGR00670 241 EADVLKIWYVTRIQKERFPEDDPEEYEKVRGSYGITAERLEAAKKGKEVIVLHPLPVHRVDEIDPEVDDTPHAKYFKDQA 320 (336)
T ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 57847886420011123788788999841001466288986306899368847889788566774323664467888875
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 7569999999999977
Q gi|254780300|r 291 EMGVAVRMAIIKELLE 306 (316)
Q Consensus 291 ~Nrl~~~~AlL~~~l~ 306 (316)
.||+++|||||..++.
T Consensus 321 ~nGV~vRMAlL~~~~~ 336 (336)
T TIGR00670 321 FNGVPVRMALLSLLLG 336 (336)
T ss_pred HCCHHHHHHHHHHHCC
T ss_conf 1568999999999629
No 14
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=100.00 E-value=0 Score=619.06 Aligned_cols=296 Identities=20% Similarity=0.260 Sum_probs=251.4
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77774178223899999999999999996442048775212897699996078733789999798761352111233332
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNS 83 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s 83 (316)
+++||||++.||+++||..||++|.++|+.+.... ....|+||+++++|+|||||||+|||+||.+|||+++++++++|
T Consensus 1 l~~kh~L~~~dls~~ei~~ll~~A~~lK~~~~~~~-~~~~L~gk~~~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s 79 (357)
T TIGR03316 1 LREKDFILTWEWTRDELDTVLDVAFDLKRLRALNI-STKLFESGLGISLFRDNSTRTRFSFASAMNLLGLHAQDLDEGKS 79 (357)
T ss_pred CCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99888288112899999999999999987764688-77557898899997389840389999999985995999783224
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEECCCC-----CHHHHHHCC-----------CCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 101333422479998741367146520321-----005542001-----------2342111123456631223322222
Q gi|254780300|r 84 AMKKGENIADTIATLNALRPNIIVIRHPYS-----GAVNSLMHK-----------IKGPSIINAGDGTHEHPSQALLDAF 147 (316)
Q Consensus 84 ~~~kgEs~~Dta~vls~~~~d~iv~R~~~~-----~~~~~~a~~-----------~s~ppVINag~~~~~HP~Q~LaDl~ 147 (316)
|++||||++||++|||+| +|+|++|++.+ ..+.+++++ +++| ||||+++ .+||||+|+|+|
T Consensus 80 s~~kGEsv~DTarvls~y-~D~IviR~~~~~~~~~~~~~e~a~~~~~~~~~~~~~s~vP-VINal~d-~~HPtQaLaDl~ 156 (357)
T TIGR03316 80 QIGHGETVRETAEMISFF-ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPP-LVNLQCD-IDHPTQAMADIM 156 (357)
T ss_pred CCCCCCCHHHHHHHHHHH-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-EEECCCC-CCCCHHHHHHHH
T ss_conf 476898879999999963-8889998243334037889999987655443102236898-7837888-778369999999
Q ss_pred HHHCCCCCCC---CCCEEECCCC-----CCCCHHHHHHHHHHCCCCEEEECCCCCCCCC-C----------CCCCCCCCC
Q ss_conf 2201222100---0100103554-----4330133446642013420553277532221-1----------212343300
Q gi|254780300|r 148 AIRHFKGKIS---NLHIAICGDI-----LHSRVARSDIMLLNTMGARIRVIAPITLLPK-D----------ISNMGVEVF 208 (316)
Q Consensus 148 Ti~e~~g~l~---~l~ia~vGD~-----~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~-~----------~~~~~~~~~ 208 (316)
||+|+||.++ |++|+++||. .++||+||++.++++||+++++++|++|.+. + ..+..++++
T Consensus 157 Ti~e~~G~~~~l~g~~v~i~~~~~~~~g~~~~Va~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 236 (357)
T TIGR03316 157 TLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIV 236 (357)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99998487224677748999861255651537999999999975980999778423678799999999999819928997
Q ss_pred CCHHHCCCCCCEEEEEEECCHHHHHHHH------------------HHHHHHCCCCCCCHHHHHHCCC-CCEEECCCCCC
Q ss_conf 5845603686221000113312333444------------------4555420235758899983799-85995589987
Q gi|254780300|r 209 HDMQKGLKNVDVIMILRMQQERIPRSLI------------------PSIREYKHVYSLDEKKLKYAKK-DALVMHPGPIN 269 (316)
Q Consensus 209 ~d~~ea~~~aDvv~~~~~~~e~~~~~~~------------------~~~~~~~~~~~v~~~~l~~a~~-~ai~mHcLP~~ 269 (316)
+|+++|+++|||||++.|.+++....+. ....+++.+||||+++|+++++ +++||||||+|
T Consensus 237 ~d~~eav~~aDVvytd~W~sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~~m~~a~~~~ai~MHclPa~ 316 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLPAD 316 (357)
T ss_pred CCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEECCCCCC
T ss_conf 59999956899998366401378888998860110567888777666567750475116999974789796997999798
Q ss_pred ------CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ------6874476797699701686877569999999999
Q gi|254780300|r 270 ------RNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKE 303 (316)
Q Consensus 270 ------Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~ 303 (316)
||+||+++|+|||+|+||+|||||||+|||||+.
T Consensus 317 ~RGv~~R~~EIt~eV~d~~~S~i~~QAeNrl~~~~AvLaa 356 (357)
T TIGR03316 317 IRGVSCEEGEVTEEVFDGYRSVIYKEASNKPYTIAAMIAA 356 (357)
T ss_pred CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7788887771489996799970998875049999999852
No 15
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=100.00 E-value=0 Score=613.82 Aligned_cols=306 Identities=18% Similarity=0.203 Sum_probs=258.4
Q ss_pred CCC-CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 997-7777417822389999999999999999644204877521289769999607873378999979876135211123
Q gi|254780300|r 1 MYS-FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79 (316)
Q Consensus 1 m~~-f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~ 79 (316)
|++ +.+||||++.|||++||..||++|.++|..++.+. ...+|.||++++||+|||||||+|||+|+.+||||++||+
T Consensus 14 m~~nL~grdfL~l~D~t~eEi~~lldlA~~LK~~k~~g~-~~~~l~gk~~~~IFeK~STRTR~SFEva~~~LGg~~~yL~ 92 (395)
T PRK07200 14 LTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENI-STKVFNSGLGISVFRDNSTRTRFSYASALNLLGLAQQDLD 92 (395)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 522246887772013999999999999999999997699-7744589738999706983468999999997799769738
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECC-----CCCHHHHHHCC-------CC---CCCCCCCCCCCCCCHHHHHH
Q ss_conf 33321013334224799987413671465203-----21005542001-------23---42111123456631223322
Q gi|254780300|r 80 TKNSAMKKGENIADTIATLNALRPNIIVIRHP-----YSGAVNSLMHK-------IK---GPSIINAGDGTHEHPSQALL 144 (316)
Q Consensus 80 ~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~-----~~~~~~~~a~~-------~s---~ppVINag~~~~~HP~Q~La 144 (316)
+.++|+++|||++|||||||+| .|+|++|+. .+..+.+++++ .. .||||||+++. .||||+||
T Consensus 93 p~~~QlG~gEsi~DTArVLsR~-~D~I~~R~~~~~g~g~~~~~e~a~~~~~~~~~~~vp~~~pViN~LTD~-~HPtQ~LA 170 (395)
T PRK07200 93 EGKSQIAHGETVRETANMISFC-ADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDI-DHPTQSMA 170 (395)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH-HHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCHHHHH
T ss_conf 9876277998889999999855-025887303334541489999999998888734676555123255557-78589999
Q ss_pred HHHHHHCCCCCCC---CCCEEECCC-----CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCC
Q ss_conf 2222201222100---010010355-----443301334466420134205532775322211-----------212343
Q gi|254780300|r 145 DAFAIRHFKGKIS---NLHIAICGD-----ILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGV 205 (316)
Q Consensus 145 Dl~Ti~e~~g~l~---~l~ia~vGD-----~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~ 205 (316)
|++||+|++|+++ |++++++|+ ..++||++|++.+++++|+++++++|++|.|.. .+++.+
T Consensus 171 DllTi~E~~G~l~~lkg~k~~~~~~y~~~~g~~~nv~~sl~~~~a~lGmdv~ia~P~gy~p~~~~v~~A~~~A~~sG~~i 250 (395)
T PRK07200 171 DLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSF 250 (395)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 99999998187324578638999741466774226899999999774974999789877989899999999999839989
Q ss_pred CCCCCHHHCCCCCCEEEEEEECCHHHH---HHHH---------------HHHHHHCCCCCCCHHHHHHC-CCCCEEECCC
Q ss_conf 300584560368622100011331233---3444---------------45554202357588999837-9985995589
Q gi|254780300|r 206 EVFHDMQKGLKNVDVIMILRMQQERIP---RSLI---------------PSIREYKHVYSLDEKKLKYA-KKDALVMHPG 266 (316)
Q Consensus 206 ~~~~d~~ea~~~aDvv~~~~~~~e~~~---~~~~---------------~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcL 266 (316)
++++|+.+|+++||||||+.|.++... .+.+ ......+.+||||.++|+++ +++++|||||
T Consensus 251 ~iT~D~~eAv~gADvIYTDvW~sm~~~~e~~e~l~~~~~~~~~~~e~e~~~r~~~~~~yqVn~~lm~~a~~~~aifMHCL 330 (395)
T PRK07200 251 RQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTKDGEALYMHCL 330 (395)
T ss_pred EEECCHHHHHCCCCEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHCCCCCEEEEECC
T ss_conf 99679999957999997278777654431066531231023445677776553047895467999984279985998368
Q ss_pred CCC------CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 987------6874476797699701686877569999999999977814
Q gi|254780300|r 267 PIN------RNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316)
Q Consensus 267 P~~------Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316)
|++ ||.|||+||+|||+|+||+|||||||++||||..++..+.
T Consensus 331 PA~~~~~~~r~~EVTdeVfd~p~SvVFdEAENRlHtiKAvMvat~~~~p 379 (395)
T PRK07200 331 PADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYAKP 379 (395)
T ss_pred CCCCCCCCCCCCEECHHHHCCCCCCEECHHCCHHHHHHHHHHHHHCCCH
T ss_conf 9987666776760127540577762433121228999999999530488
No 16
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=609.32 Aligned_cols=305 Identities=44% Similarity=0.647 Sum_probs=276.4
Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333
Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
+.|++||+|+++||+++|++.||+.|.++++. .+..+..+.|+||+++++|||||||||.|||+|+++|||.++.|+..
T Consensus 3 ~~~~~rhlisi~dls~~ei~~ll~~A~~~~~~-~~~~~~~~~l~gk~v~~lFFEpSTRTr~SFE~A~krLG~~Vv~~~~~ 81 (316)
T COG0540 3 NPFKMRHLISIEDLSREELELLLDTADEFKAV-ARAEKKLDLLKGKVVANLFFEPSTRTRLSFETAMKRLGADVVNFSDS 81 (316)
T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHH-HHCCCCCCHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 86666625016758999999999999999866-50247750212767999984587730664999999729938964587
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316)
+|+.+||||+.||++++++|++|++|+||+..++...+++.+.++||||||||.++||||+|+|+|||+|.+|.++|++|
T Consensus 82 ~sSs~KGEtL~DT~~tl~ayg~D~iViRH~~egaa~~~a~~~~~~pvINaGDG~~qHPTQ~LLDl~TI~~~~G~~~gl~i 161 (316)
T COG0540 82 ESSSKKGETLADTIRTLSAYGVDAIVIRHPEEGAARLLAEFSGVNPVINAGDGSHQHPTQALLDLYTIREEFGRLDGLKI 161 (316)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 66544661099999999860799899947641489999873588854788889998952899999999998487679479
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-----CCCCCCC-CCCCCC-HHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 103554433013344664201342055327753222-----1121234-330058-456036862210001133123334
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP-----KDISNMG-VEVFHD-MQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-----~~~~~~~-~~~~~d-~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
++|||++||||+||++.++++||+++.+++|++|.| ++....+ ...+++ .++++.++||+|++|+|.||+.+.
T Consensus 162 aivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~ 241 (316)
T COG0540 162 AIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDP 241 (316)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHHHCCCC
T ss_conf 99825441188887799999819879998865867946578887624852798146666423377898522347544786
Q ss_pred HHHH-HHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4445-55420235758899983799859955899876874476797699701686877569999999999977814
Q gi|254780300|r 235 LIPS-IREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316)
Q Consensus 235 ~~~~-~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316)
...+ .++|+..|+.+.+.+ +++++|+|||||+||++||+++|+++|+|+||+||+||+++|||||+.+|+.++
T Consensus 242 ~~~s~~~~y~~~~~~~~~~~--~k~~~ivmHP~PvnR~~EI~~~v~~~p~s~~f~Q~~nGV~vRMAlL~~~l~~~~ 315 (316)
T COG0540 242 EEYSKVKEYYKLYGLTLERL--AKPDAIVMHPLPVNRVVEIASEVDDTPQSRYFQQVKNGVAVRMALLELLLGGRE 315 (316)
T ss_pred CCHHHHHHHHHHHHHHHHHH--CCCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 32588888999978899962--689968978887567875766564461778999996279999999999853336
No 17
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=100.00 E-value=0 Score=602.34 Aligned_cols=294 Identities=24% Similarity=0.335 Sum_probs=252.8
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77774178223899999999999999996442048775212897699996078733789999798761352111233332
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNS 83 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s 83 (316)
..|||||+++||+++||+.||++|.++|+++ ..+.|+||+++++|+|||||||+|||+|+.+|||++++++++++
T Consensus 1 m~mkhllsi~dls~~ei~~ll~~A~~~k~~~-----~~~~L~gk~v~~lF~epSTRTR~SFE~A~~rLGg~~i~l~~~~s 75 (335)
T PRK04523 1 MSLKHFLNTQDWSRAELDALLTQAAAFKRNK-----LGHALKGKSIALVFFNPSLRTRTSFELGAFQLGGHAIVLQPGKD 75 (335)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9955417611189999999999999997089-----98778999899997379830499999999986998898468776
Q ss_pred C------------CCCCCCCCCHHHHHHHHCCCCEEEECCCCC----------HHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 1------------013334224799987413671465203210----------055420012342111123456631223
Q gi|254780300|r 84 A------------MKKGENIADTIATLNALRPNIIVIRHPYSG----------AVNSLMHKIKGPSIINAGDGTHEHPSQ 141 (316)
Q Consensus 84 ~------------~~kgEs~~Dta~vls~~~~d~iv~R~~~~~----------~~~~~a~~~s~ppVINag~~~~~HP~Q 141 (316)
+ ..+|||++||++|+|+| +|+||+|++.++ .+.++++++++| |||||+ .+||||
T Consensus 76 s~~~~~~~g~~~~~~~~Esl~Dt~~vls~y-~D~iviR~~~~~~~~~~~~~~~~~~~~a~~s~vP-VIN~g~--~~HPtQ 151 (335)
T PRK04523 76 AWPIEFNLGTVMDGDTEEHIAEVARVLSRY-VDLIGVRAFPKFVDWEEDRQDPVLNSFAKYSTVP-VINMET--ITHPCQ 151 (335)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC-EECCCC--CCCCHH
T ss_conf 432224555322577776699999999843-9899993253234200001368999999866887-306888--888489
Q ss_pred HHHHHHHHHCCCCC-CCCCCEE--ECC--CCCCCCHHHHHHHHHHCCCCEEEECCCCC-CCCC-C----------CCCCC
Q ss_conf 32222222012221-0001001--035--54433013344664201342055327753-2221-1----------21234
Q gi|254780300|r 142 ALLDAFAIRHFKGK-ISNLHIA--ICG--DILHSRVARSDIMLLNTMGARIRVIAPIT-LLPK-D----------ISNMG 204 (316)
Q Consensus 142 ~LaDl~Ti~e~~g~-l~~l~ia--~vG--D~~~~~v~~S~~~~~~~~g~~v~~~~P~~-~~~~-~----------~~~~~ 204 (316)
+|+|+|||+|++|. ++|++++ |+| +..++||++|++.++.++|+++++++|++ +.+. . ..+..
T Consensus 152 aL~Dl~Ti~e~~g~~~~~~~~~i~~~~~~~~~~~~va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~ 231 (335)
T PRK04523 152 ELAHALALQEHFGTPLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAEQNAAESGGS 231 (335)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 99999999998386336987999985147744146989999999974990899817854679989999999999972985
Q ss_pred CCCCCCHHHCCCCCCEEEEEEECCHHHHHHHH--HHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCC
Q ss_conf 33005845603686221000113312333444--4555420235758899983799859955899876874476797699
Q gi|254780300|r 205 VEVFHDMQKGLKNVDVIMILRMQQERIPRSLI--PSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGS 282 (316)
Q Consensus 205 ~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~--~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~ 282 (316)
+++++|+++|+++|||||+++|++++..+... ...+++++.|++|+++|+.+ ++++||||||+|||+||+++|+|+|
T Consensus 232 v~~~~d~~~al~~aDvvyt~~w~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~d~i~MHplP~~Rg~Ei~~~V~d~p 310 (335)
T PRK04523 232 VQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKATDAVMDSP 310 (335)
T ss_pred EEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHCCC-CCCEEECCCCCCCCCCCCHHHHCCC
T ss_conf 999818999973232466666631121156102599999876378249997179-9979989999999880278885799
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7016868775699999999999778
Q gi|254780300|r 283 QSIIQYQVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 283 ~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316)
+|+||+||+||+|+|||||+|+|+.
T Consensus 311 ~s~v~~Qa~Ngv~~rmAiL~~ll~~ 335 (335)
T PRK04523 311 NCIAIDEAENRLHVQKAIMAALASQ 335 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8769999873099999999998486
No 18
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=100.00 E-value=0 Score=578.96 Aligned_cols=306 Identities=32% Similarity=0.471 Sum_probs=278.8
Q ss_pred CCCC-CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC-C
Q ss_conf 7777-4178223899999999999999996442048775212897699996078733789999798761352111233-3
Q gi|254780300|r 4 FPLY-NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT-K 81 (316)
Q Consensus 4 f~~k-~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~-~ 81 (316)
|.+| |+||+++|+++++..||..|.++. ...+....++.|+||.++.+|||||||||+|||+||.+|||.++.+.. +
T Consensus 85 ~~~~~HiLSv~qf~R~~l~~lF~vA~~m~-~~a~r~~~~~vL~GkILa~LFfEpSTRTr~SFe~Am~RLGG~Vi~~~~~~ 163 (430)
T PRK11891 85 FEGKPQLLSVDQFSRDSVEALFRVADMMQ-PIARRQKISRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFT 163 (430)
T ss_pred HCCCCEEEEHHHCCHHHHHHHHHHHHHHH-HHHHHHCCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCC
T ss_conf 25885177455428989999999999988-98866233113147578886237867506689999997798183678887
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC----CCC
Q ss_conf 3210133342247999874136714652032100554200123421111234566312233222222201222----100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG----KIS 157 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g----~l~ 157 (316)
.||+.||||++||++++++| +|+||+||+..+.+..+++.+.+| |||||||.++||||+|+|+|||++.+| .++
T Consensus 164 ~SS~~KGEsl~DT~r~l~~Y-~D~iV~RHp~~Gs~~~aa~~s~vP-VINaGDG~~eHPTQaLLDl~TI~~e~g~~~~~id 241 (430)
T PRK11891 164 FSSMAKGESIYDTSRVMSGY-VDALVIRHPEQGSVAEFARATNLP-VINGGDGPGEHPSQALLDLYTIQREFSRLGKIVD 241 (430)
T ss_pred CCCCCCCCCHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 46423777799999999626-989999189835899998647987-3635788666832677777889987532235557
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCC-CCCCC------CCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 01001035544330133446642013-420553277532-22112------12343300584560368622100011331
Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTM-GARIRVIAPITL-LPKDI------SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~-g~~v~~~~P~~~-~~~~~------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
|++|++|||++|+|++||++.++..+ |.++++++|+++ +|+++ .+..+++++++++++.++||+|.+|+|+|
T Consensus 242 Gl~IalvGDLKyGRTVHSL~klLs~y~~v~~~lVSP~~L~mP~~i~~~l~~~g~~~~e~~~L~e~i~~~DVlY~TRIQkE 321 (430)
T PRK11891 242 GAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVDQISTNGHVIEQTDDLAAGLRGADVVYATRIQKE 321 (430)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEECCCCCC
T ss_conf 85799864545660098999999854694699989213079889999999779869993787574034798985773314
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHH-HHCCCCCEEECCCCCCC---CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 233344445554202357588999-83799859955899876---87447679769970168687756999999999997
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKL-KYAKKDALVMHPGPINR---NYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l-~~a~~~ai~mHcLP~~R---g~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l 305 (316)
|+.++ ...+|...|.++.+.+ +.||+++++|||||+++ ..||+.||+++|++.||+||+||+++|||||+.+|
T Consensus 322 RF~~e---e~~~~~~~~~l~~~~l~~~aK~~~iIMHPLPRnsr~~vnEIs~eVD~dPRAaYFRQa~nGv~VRMALLalvL 398 (430)
T PRK11891 322 RFTDE---SFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLNRDPRLAIFRQTDNGIPVRMAIFAVLL 398 (430)
T ss_pred CCCCH---HHHHHHCCEEECHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 48976---788874787787999985269997887998989888878177524589610388887518999999999982
Q ss_pred CCCCCCCCCC
Q ss_conf 7814222012
Q gi|254780300|r 306 ENQNKITQKE 315 (316)
Q Consensus 306 ~~~~~~~~~~ 315 (316)
|..++++++.
T Consensus 399 GV~~~v~~~~ 408 (430)
T PRK11891 399 GVENLVQHSM 408 (430)
T ss_pred CCHHHHHHHC
T ss_conf 9377776525
No 19
>KOG1504 consensus
Probab=100.00 E-value=0 Score=554.62 Aligned_cols=297 Identities=25% Similarity=0.272 Sum_probs=272.5
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77774178223899999999999999996442048-77521289769999607873378999979876135211123333
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFN-PSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~-~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316)
-.+||||+++||+.+||..|+++|.++|...+..+ ....+|.||+++|+|.|+|||||+|||.|...||||+++|++++
T Consensus 37 s~~r~llsikd~s~eeik~ll~rase~K~~~Kqn~e~n~~~l~gks~amIF~KrStRTRvStEt~~~~lGg~~mfLg~~D 116 (346)
T KOG1504 37 SDLRDLLSIKDFSTEEIKTLLDRASEVKALLKQNGERNYLPLKGKSMAMIFAKRSTRTRVSTETGFFLLGGHPMFLGKND 116 (346)
T ss_pred CCHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHCCCCEEECCHH
T ss_conf 56455053014776899999988899999998468534555567546788862665157750012454278520205312
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCE
Q ss_conf 210133342247999874136714652032100554200123421111234566312233222222201222-1000100
Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG-KISNLHI 161 (316)
Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-~l~~l~i 161 (316)
+|+++.||++||+||+|+| +|+|+.|...+..+..+++++|+| |||+++ ++.||||+|||++||.|++| +++|+|+
T Consensus 117 IqlGvnEs~~DtarVlSsm-~d~I~ARV~khsDi~tlak~sSvP-iINgL~-D~~HPlQ~laD~LTi~E~f~ks~~glkv 193 (346)
T KOG1504 117 IQLGVNESLYDTARVLSSM-VDIIMARVNKHSDILTLAKYSSVP-IINGLC-DHFHPLQILADLLTIIEHFGKSVEGLKV 193 (346)
T ss_pred HCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCC-EECCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 1024422267699999998-899999876233599986426886-332420-2467489999999999987343455079
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHH
Q ss_conf 10355443301334466420134205532775322211-----------2123433005845603686221000113312
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQER 230 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~ 230 (316)
+|+|| .|||.|||+++++++|+++..++|++|.|+. ..+..+++++||.+|+.+|||+|++.|.+|+
T Consensus 194 awiGD--~NNvlhs~mia~ak~gih~s~atPkg~e~d~div~~akq~a~eNgsk~eltnDp~eA~~~anvlvtDtwiSMG 271 (346)
T KOG1504 194 AWIGD--GNNVLHSWMIAAAKFGIHFSCATPKGYEPDKDIVSKAKQAAEENGSKFELTNDPLEAVIGANVLVTDTWISMG 271 (346)
T ss_pred EEECC--CCHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEHHHHCC
T ss_conf 99726--5088999999863314378852899988566899999999870587789745828863488679973144426
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33344445554202357588999837998599558998768744767976997016868775699999999999778
Q gi|254780300|r 231 IPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316)
...++ +...+.+++||||+++|+.|++++.||||||+|+ +||+++|+.+|+|+||+|||||+|++||++..+|++
T Consensus 272 qe~ek-earlkaFqGfQV~~el~kvA~~~~~FmHCLPr~~-eEVsdeVfy~~~SiVF~eAENR~~a~mavm~~ll~n 346 (346)
T KOG1504 272 QEDEK-EARLKAFQGFQVTEELMKVAGPKAKFMHCLPRHP-EEVSDEVFYGPYSIVFPEAENRKWAQMAVMLHLLGN 346 (346)
T ss_pred HHHHH-HHHHHHHCCCEEHHHHHHHHCCCCEEEECCCCCH-HHCCCCEEECCCEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 37799-9999862372230899964178745762168880-223675265454055513330578999999998439
No 20
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=0 Score=427.00 Aligned_cols=306 Identities=27% Similarity=0.409 Sum_probs=263.7
Q ss_pred CC-CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 99-77777417822389999999999999999644204877521--289769999607873378999979876135211-
Q gi|254780300|r 1 MY-SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTR--LQGLTQINLFLETSTRTQTSFEVAGKLLGVHVI- 76 (316)
Q Consensus 1 m~-~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~--L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i- 76 (316)
|+ .|.+|.+--++||+-+|-..|++...++|++|.+......+ -..-.+..+|+|||||||+||+.||++|||.++
T Consensus 1 m~~~f~grsl~vi~d~sv~eq~fly~~tk~lk~~~~~~~d~~ef~ik~d~~iyivFfEPSTRTRlSFesAa~~lgG~vV~ 80 (524)
T PRK13376 1 MKRDFLGRSLTVIEDLSVEEQLFLYEKTKELKQKWYNKEDVSEFQIKKDVGIYIVFVEPSTRTKESFINAAKFHKNAKVN 80 (524)
T ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 97431465035430356588899999899999986340332120451544289999668773077799999984897675
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCC--CEEEECCCCCH-------HHHHHCCC--CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 1233332101333422479998741367--14652032100-------55420012--3421111234566312233222
Q gi|254780300|r 77 NINTKNSAMKKGENIADTIATLNALRPN--IIVIRHPYSGA-------VNSLMHKI--KGPSIINAGDGTHEHPSQALLD 145 (316)
Q Consensus 77 ~l~~~~s~~~kgEs~~Dta~vls~~~~d--~iv~R~~~~~~-------~~~~a~~~--s~ppVINag~~~~~HP~Q~LaD 145 (316)
.++.++||++||||+.||++|+++| +| +||+||+..|+ +.++|+.. ++|||||||||.++||||+|+|
T Consensus 81 ~~~~~sSS~~KGESL~DTirvlsgY-sDasIIVmRHP~eGaaRll~e~v~efA~~~~v~vp~~INAGDG~nEHPTQaLLD 159 (524)
T PRK13376 81 IFDSEHSSFNKQESYVDTFNMLTGY-SDYSIFIVRTRLEGVCRLLERKVSEFASRHGIERPAFINAGDGKHEHPTQELLD 159 (524)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 3376655201585099999998633-676279994788772145678899888644898785377888988883289999
Q ss_pred HHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCC-CCEEEECCCCCC-CCCC------CCCCCCCCCCCHHHCCC
Q ss_conf 222201222-10001001035544330133446642013-420553277532-2211------21234330058456036
Q gi|254780300|r 146 AFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTM-GARIRVIAPITL-LPKD------ISNMGVEVFHDMQKGLK 216 (316)
Q Consensus 146 l~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~-g~~v~~~~P~~~-~~~~------~~~~~~~~~~d~~ea~~ 216 (316)
+|||+|..| ++++++||+|||++|+|++||+..++..| ++++.+++|+++ +|+. ..+..++++.++++.++
T Consensus 160 LfTI~ee~g~~~~~I~IAlVGDLK~GRTVHSL~~aL~~fkNV~~~LISPeEL~MP~~yiekmk~~G~evr~f~si~eyl~ 239 (524)
T PRK13376 160 EFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELQMPEHYIEKMKKNGFEVRIFSSIEEYLK 239 (524)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 99999983877785599997443457118889988876248389998878806988999999866914885104999870
Q ss_pred CCCE---EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC-CCCHHHHCCCCCHHHHHHHH
Q ss_conf 8622---1000113312333444455542023575889998379985995589987687-44767976997016868775
Q gi|254780300|r 217 NVDV---IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNY-EISSSVADGSQSIIQYQVEM 292 (316)
Q Consensus 217 ~aDv---v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~-Ev~~~v~d~~~s~v~~Qa~N 292 (316)
+.|+ +|.+|.|.||..++..+......+.-....++|.+..+++.|.||||+|+-. +|-..+++-|-+.+-.||.|
T Consensus 240 ~~~~a~iwyftrlqlermge~ilek~~~lr~~vtf~k~~l~~~pe~~kfyhplpr~~~~ptip~fld~~plngwe~qa~n 319 (524)
T PRK13376 240 QKDVAKIWYFTRLQLERMGEDILEKEHILRKSVTFRKEFLDKLPEGVKFYHPLPRHKVYPTIPTFLDTLPLNGWETQAIN 319 (524)
T ss_pred CCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 47611247750888987778888889998765202787875363666003668855568987642357888715555305
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 6999999999997781
Q gi|254780300|r 293 GVAVRMAIIKELLENQ 308 (316)
Q Consensus 293 rl~~~~AlL~~~l~~~ 308 (316)
|.|+|+-+|.+ |++.
T Consensus 320 gy~~r~vllsm-lgga 334 (524)
T PRK13376 320 GYWVRIVLLSM-LGGA 334 (524)
T ss_pred CEEHHHHHHHH-HCCC
T ss_conf 54469999998-5464
No 21
>pfam02729 OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain.
Probab=100.00 E-value=0 Score=324.22 Aligned_cols=140 Identities=44% Similarity=0.610 Sum_probs=132.4
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 74178223899999999999999996442048775212897699996078733789999798761352111233332101
Q gi|254780300|r 7 YNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMK 86 (316)
Q Consensus 7 k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~ 86 (316)
||||++.||+++||+.||++|.++|+.+.++. +.|+||+++++|+|||||||+|||+|+.+|||+++++++++++++
T Consensus 1 kh~l~i~dls~~ei~~ll~~A~~~k~~~~~~~---~~l~gk~i~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~ 77 (140)
T pfam02729 1 RHLLSLDDLSREELEALLDLAAELKKKPRSGS---PLLRGKTLALLFFEPSTRTRLSFEAAAKRLGGHVIYLDPGSSSLG 77 (140)
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCCCCCEEEEEECCCCCCCEEEHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 99786022599999999999999984232167---557898899985378874112207689866984687363335577
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 333422479998741367146520321005542001234211112345663122332222222012
Q gi|254780300|r 87 KGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHF 152 (316)
Q Consensus 87 kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~ 152 (316)
||||++||++|+++| +|++|+|++.++.+.++++++++| |||||++ .+||||+|+|++||+|+
T Consensus 78 kgEsi~Dt~~vls~~-~D~iv~R~~~~~~~~~~a~~~~vP-VINa~~~-~~HPtQaL~Dl~Ti~e~ 140 (140)
T pfam02729 78 KGESLKDTARVLSRY-VDAIVIRHPSHGALEELAKYSSVP-VINAGDD-HEHPTQALADLLTIREH 140 (140)
T ss_pred CCCCHHHHHHHHHHH-CCEEEEECCCCHHHHHHHHHCCCC-EEECCCC-CCCHHHHHHHHHHHHHC
T ss_conf 884799999999985-999999899611699999868978-8989999-98748999999998609
No 22
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=100.00 E-value=5.4e-43 Score=298.95 Aligned_cols=143 Identities=41% Similarity=0.585 Sum_probs=130.0
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------C-CCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 00100103554433013344664201342055327753222112-----------1-23433005845603686221000
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------S-NMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~-~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
+|+||+||||+.+|||+||++.++++||+++++++|+++.|... . +..+++++|++++++++||||++
T Consensus 1 ~g~~i~~vGD~~~~rv~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvyt~ 80 (155)
T pfam00185 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVYTD 80 (155)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEE
T ss_conf 99899998378727499999999998499899987852388889999999998862897499984999984539999997
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11331233344445554202357588999837998599558998768744767976997016868775699999999999
Q gi|254780300|r 225 RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKEL 304 (316)
Q Consensus 225 ~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~ 304 (316)
+||.|++. ..+++++.||||.++|+.++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+|+
T Consensus 81 ~wq~e~~~-----~~~~~~~~y~v~~~ll~~~~~~~i~mH~LP~~R~~Ei~~~V~~~p~s~v~~Qa~Nr~~~r~AlL~~l 155 (155)
T pfam00185 81 RWQKEREE-----RLEEFKPDYQVTAELLKKAKPDAIVMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLALL 155 (155)
T ss_pred EEEHHHHH-----HHHHCCCCCEECHHHHHHCCCCCEEECCCCCCCCEEECHHHHCCCCCHHHHHHHHCHHHHHHHHHHC
T ss_conf 65410555-----6764176947999999614899489668776668196577855874689999983899999999769
No 23
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.02 E-value=0.002 Score=42.30 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCHHHHHHH-----HHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 1111234566312233222-----222201222-1000100103554433013344664201342055327753222112
Q gi|254780300|r 127 SIINAGDGTHEHPSQALLD-----AFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI 200 (316)
Q Consensus 127 pVINag~~~~~HP~Q~LaD-----l~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~ 200 (316)
+|.|+- |-+ +++.++ ++.+.+..| .+.|.++.++| .+||...+...+..||+++..+-|.....
T Consensus 83 ~v~naP-G~N---a~sVaEyvl~~ll~la~~~g~~l~gktvGIIG---~G~IG~~va~~l~afG~~vl~~DP~~~~~--- 152 (379)
T PRK00257 83 TWSNAP-GCN---ARGVVDYVLGSLLTLAEREGVDLAERTYGIVG---VGHVGGRLVRVLRGLGWKVLVCDPPRQEA--- 152 (379)
T ss_pred EEEECC-CCC---HHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCHHHHH---
T ss_conf 899699-877---79999999999999998508665198799977---16799999999997799899978457664---
Q ss_pred CCCCCCCCCCHHHCCCCCCEEEE-EEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHH
Q ss_conf 12343300584560368622100-0113312333444455542023575889998379985995589987687447679
Q gi|254780300|r 201 SNMGVEVFHDMQKGLKNVDVIMI-LRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSV 278 (316)
Q Consensus 201 ~~~~~~~~~d~~ea~~~aDvv~~-~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v 278 (316)
. +...+.++++.++.+|+|.. ...-.++ ++....-++.+.++.+++++++..+- ||.-|+++.
T Consensus 153 -~-~~~~~~sleell~~sDiIslHvPLt~~g----------~~~T~~Li~~~~L~~mk~~aiLINts---RG~VVDe~A 216 (379)
T PRK00257 153 -E-GDGDFVSLERILEECDIISLHTPLTKEG----------EHPTWHLLDEAFLASLRPGAWLINAS---RGAVVDNQA 216 (379)
T ss_pred -H-CCCCEECHHHHHHHCCEEEEECCCCCCC----------CCCCCCCCCHHHHHHCCCCCEEEECC---CCHHCCHHH
T ss_conf -3-3860334999987499999925777788----------75320471999996079980999889---730019999
No 24
>PRK07574 formate dehydrogenase; Provisional
Probab=96.76 E-value=0.0054 Score=39.54 Aligned_cols=125 Identities=13% Similarity=0.202 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCC--CCHHHHHHHHHHHHCCC---------C------------CCCCCCEEECCCCCCCCHHHHHHHHHH
Q ss_conf 421111234566--31223322222220122---------2------------100010010355443301334466420
Q gi|254780300|r 125 GPSIINAGDGTH--EHPSQALLDAFAIRHFK---------G------------KISNLHIAICGDILHSRVARSDIMLLN 181 (316)
Q Consensus 125 ~ppVINag~~~~--~HP~Q~LaDl~Ti~e~~---------g------------~l~~l~ia~vGD~~~~~v~~S~~~~~~ 181 (316)
.+.|.|+- |.+ +=.=++++-++.+.+++ | +++|.++..+| .+|+.+.....+.
T Consensus 137 GI~V~nvp-G~Ns~SVAEhtv~liLal~R~i~~~~~~v~~G~W~~a~~~~~~~EL~GKTlGIVG---~GrIG~~VArra~ 212 (385)
T PRK07574 137 NITVAEVT-GSNSISVAEHVVMMILALVRNYLPSHRQVVDGGWNIADCVSRSYDLEGMTVGTVG---AGRIGLAVLRRLK 212 (385)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCCCCEECCCCEEEEEC---CCHHHHHHHHHHH
T ss_conf 99999599-9871999999999999997588889999984998512125664326899899989---7889999999999
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE
Q ss_conf 13420553277532221121234330058456036862210001133123334444555420235758899983799859
Q gi|254780300|r 182 TMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDAL 261 (316)
Q Consensus 182 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai 261 (316)
.||+++...-|-.+-++.....+++.+.++++.++.+|+|..-.=- ..+.. .-+|.+.++++|++++
T Consensus 213 aFgm~Vl~yDp~~l~~~~e~~lg~~~~~sldeLl~~sDvVslh~PL-----------t~eT~--~Lin~~~l~~MK~ga~ 279 (385)
T PRK07574 213 PFDVTLHYTDRHRLPAEVEQELGLTYHPDVDSLVSVCDVVTIHCPL-----------HPETE--HLFDKDVLSRMKRGSY 279 (385)
T ss_pred HCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEECCCC-----------CHHHH--HHCCHHHHHCCCCCCE
T ss_conf 7799899858866988999971986568999998628969986679-----------85774--0102999943899818
Q ss_pred EECCC
Q ss_conf 95589
Q gi|254780300|r 262 VMHPG 266 (316)
Q Consensus 262 ~mHcL 266 (316)
+..|-
T Consensus 280 LVNtA 284 (385)
T PRK07574 280 LVNTA 284 (385)
T ss_pred EEECC
T ss_conf 99888
No 25
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=96.53 E-value=0.0092 Score=38.04 Aligned_cols=102 Identities=16% Similarity=0.255 Sum_probs=72.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
.+.|.++.++| .+++.......+..||+++..+.|..- +.....++ ...++++.++.+|+|...-=.
T Consensus 33 ~L~gk~vgIiG---~G~IG~~va~~l~~fg~~V~~~d~~~~--~~~~~~~~-~~~~l~~ll~~sDii~~~~pl------- 99 (176)
T pfam02826 33 ELSGKTVGIIG---LGRIGRAVARRLKAFGMKVIAYDRYPK--AEAEALGA-RYVSLDELLAESDVVSLHLPL------- 99 (176)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHHCCCEEEECCCCC--CHHHHCCE-EECCHHHHHHHCCEEEECCCC-------
T ss_conf 57999999989---699999999999983981254379876--10231571-666899998629988754767-------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHH
Q ss_conf 44455542023575889998379985995589987687447679
Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSV 278 (316)
Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v 278 (316)
..+. ..-++.+.++.++++++|--+- ||.-|+++.
T Consensus 100 ----t~~T--~~li~~~~l~~mk~~a~lIN~s---RG~ivde~a 134 (176)
T pfam02826 100 ----TPET--RHLINAERLALMKPGAILINTA---RGGLVDEDA 134 (176)
T ss_pred ----CCCC--CCCCCHHHHHHHCCCCEEEEEC---CCCCCCHHH
T ss_conf ----4202--4634699998518998899806---755128999
No 26
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.27 E-value=0.012 Score=37.34 Aligned_cols=93 Identities=20% Similarity=0.363 Sum_probs=64.1
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++.++| .+|+.......+..|||++....|..- ++.....+++ +.++++.++.+|+|..- ...
T Consensus 147 eL~gktlGIiG---~G~IG~~vak~~~~fgm~V~~~d~~~~-~~~~~~~~~~-~~~l~ell~~sDiIslh~Plt------ 215 (333)
T PRK13243 147 DVYGKTIGIVG---FGRIGQAIARRAKGFGMRILYYSRTRK-PEVEKELGAE-YRPLEDLLRESDFVVLAVPLT------ 215 (333)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHCCCE-EECHHHHHHHCCEEEECCCCC------
T ss_conf 66788999979---256689999999976999999899898-6678760968-811999742165266425586------
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 444455542023575889998379985995589
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
.+. ..-++.+.++.+|++++|..+-
T Consensus 216 ------~eT--~~li~~~~~~~MK~~a~lIN~a 240 (333)
T PRK13243 216 ------KET--YHMINEERLKLMKKTAILVNIA 240 (333)
T ss_pred ------CCC--CCCCCHHHHHHCCCCEEEEECC
T ss_conf ------013--4613699997179981999858
No 27
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=96.21 E-value=0.044 Score=33.60 Aligned_cols=90 Identities=20% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE-EEECCHHHHH
Q ss_conf 100010010355443301334466420134205532775322211212343300584560368622100-0113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI-LRMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~-~~~~~e~~~~ 233 (316)
.+.|.++.++| .+|+.......+..||+++...-|.. .++.. ..+...++++.++.+|+|.. ...-.
T Consensus 143 ~l~gktvGIiG---~G~IG~~va~~~~~fg~~Vi~yD~~~--~~~~~--~~~~~~sleell~~sDiIslh~Plt~----- 210 (330)
T PRK12480 143 PVKNMTVAIIG---TGRIGAATAKIYAGFGATITAYDAYP--NKDLD--FLTYKDSVKEAIKDADIISLHVPANK----- 210 (330)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCC--CCCCC--CCEECCCHHHHHHHCCEEEECCCCCH-----
T ss_conf 23586899967---58899999999875699899989986--42212--13232789999875999997376853-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 44445554202357588999837998599558
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316)
+.. .-|+.+.++++|+++++--+
T Consensus 211 -------~T~--~lIn~~~l~~MK~~ailINt 233 (330)
T PRK12480 211 -------ESY--HLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred -------HHH--CCHHHHHHHHCCCCCEEEEC
T ss_conf -------312--00489999757999769972
No 28
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.03 E-value=0.031 Score=34.56 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
++.|.++.++|- +|+-......++.|||++....|... |+.....+.+.+. +++.++.+|+|... ....
T Consensus 143 ~l~gktvGIiG~---GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~----- 212 (324)
T COG1052 143 DLRGKTLGIIGL---GRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTP----- 212 (324)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHCCCEECC-HHHHHHHCCEEEEECCCCH-----
T ss_conf 677888899784---88999999987217968998668874-5557405860416-8999976999999779983-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCH
Q ss_conf 4444555420235758899983799859955899876874476
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISS 276 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~ 276 (316)
+. ..-||.+.++.+|+++++.-+. ||.=|++
T Consensus 213 -------~T--~hLin~~~l~~mk~ga~lVNta---RG~~VDe 243 (324)
T COG1052 213 -------ET--RHLINAEELAKMKPGAILVNTA---RGGLVDE 243 (324)
T ss_pred -------HH--HHHCCHHHHHHCCCCEEEEECC---CCCEECH
T ss_conf -------76--6532999997568976999648---7421659
No 29
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.00 E-value=0.022 Score=35.54 Aligned_cols=102 Identities=17% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
.+.|.++.++| .+++..-....+..|||++..+.|....+.. ...++....++++.+..+|+|..--
T Consensus 139 el~gkTvGIiG---~G~IG~~va~~l~afgm~v~~~d~~~~~~~~-~~~~~~~~~~Ld~lL~~aDiv~lh~--------- 205 (324)
T COG0111 139 ELAGKTVGIIG---LGRIGRAVAKRLKAFGMKVIGYDPYSPRERA-GVDGVVGVDSLDELLAEADILTLHL--------- 205 (324)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCCCEECCCHHHHHHHCCEEEECC---------
T ss_conf 01698899989---8789999999998679869998898860001-2356311026999987699999838---------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCH
Q ss_conf 444555420235758899983799859955899876874476
Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISS 276 (316)
Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~ 276 (316)
+...+.. --++.+.++++|+.++|-.|- ||.-|++
T Consensus 206 --PlT~eT~--g~i~~~~~a~MK~gailIN~a---RG~vVde 240 (324)
T COG0111 206 --PLTPETR--GLINAEELAKMKPGAILINAA---RGGVVDE 240 (324)
T ss_pred --CCCCHHH--CCCCHHHHHCCCCCCEEEECC---CCCEECH
T ss_conf --9981222--137999994489981999888---7520358
No 30
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.96 E-value=0.037 Score=34.12 Aligned_cols=92 Identities=15% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
.+.|.++..+| .+++.......+..|||++...-|...++.. ..+...++++.++.+|+|..-.=
T Consensus 148 El~GKtlGIIG---~G~IG~~VA~~a~~fGm~Vi~yD~~~~~~~~----~~~~~~sl~ell~~sD~IslH~P-------- 212 (409)
T PRK11790 148 EVRGKTLGIVG---YGHIGTQLSVLAESLGMRVIFYDIEDKLPLG----NATQVGSLEELLAQSDVVSLHVP-------- 212 (409)
T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCHHHCCCC----CCEECCCHHHHHHHCCEEEECCC--------
T ss_conf 63587898636---7547699999998769989997860212566----84674889999875999998267--------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 44455542023575889998379985995589
Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
...+.+ .-++.+.++.+|+++++..|-
T Consensus 213 ---lt~~T~--~lIn~~~l~~MK~ga~LIN~A 239 (409)
T PRK11790 213 ---ETPSTK--NMIGAEELALMKPGAILINAS 239 (409)
T ss_pred ---CCHHHH--CCCCHHHHHHCCCCCEEEECC
T ss_conf ---984663--104399997269998999868
No 31
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.88 E-value=0.031 Score=34.58 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++.++| .+++.......+..|||++....|..... ..+++ .-++++.++.+|+|..- ..-.
T Consensus 142 ~L~gktlGIvG---~G~IG~~va~~l~~fGm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDivslh~Plt~----- 208 (311)
T PRK08410 142 EIKGKKWGIIG---LGTIGKRVAKIAQAFGAEVVYYSTSGKNK----NSEYE-RLSLEELLKTSDIISIHAPLNE----- 208 (311)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCCC----CCCCE-ECCHHHHHHHCCEEEEECCCCC-----
T ss_conf 10588899984---47489999999997699899989843124----57813-5789999873780145335762-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 444455542023575889998379985995
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316)
+. ..-++.+.++.+|++++|-
T Consensus 209 -------~T--~~li~~~~l~~Mk~~a~lI 229 (311)
T PRK08410 209 -------KT--KNLINYEELKLLKDGAILI 229 (311)
T ss_pred -------CC--CCHHHHHHHHHCCCCCEEE
T ss_conf -------22--3401289996304575599
No 32
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.59 E-value=0.11 Score=31.08 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++.++| .+++..-....+..||+++....|..- + ......+.++++.++.+|+|..- ..-.+ ..
T Consensus 119 ~L~gktvGIiG---~G~IG~~vA~~~~afg~~V~~~~r~~~-~----~~~~~~~~~~~ell~~sDivslh~Plt~~--T~ 188 (303)
T PRK06436 119 LLYNKSLGILG---YGGIGRRVALLAKAFGMNIYAYTRSYV-N----DGISSIYMEPEDIMKKSDFVLISLPLTDE--TR 188 (303)
T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCC-C----CCCCEEECCHHHHHHHCCEEEEECCCCHH--HH
T ss_conf 41188899989---765699999999977988999898532-2----45745526899999759999992578655--67
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEE--------------------------------ECCCCCCCCCCCCHHHHCC
Q ss_conf 44445554202357588999837998599--------------------------------5589987687447679769
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALV--------------------------------MHPGPINRNYEISSSVADG 281 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~--------------------------------mHcLP~~Rg~Ev~~~v~d~ 281 (316)
.-++.+.++.+|++++| -.|+|... .. +.|+-.
T Consensus 189 ------------~lI~~~~l~~MK~~a~lIN~aRG~iVde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~--~l-~NVilT 253 (303)
T PRK06436 189 ------------GMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NP-DNVILS 253 (303)
T ss_pred ------------HHHHHHHHHHCCCCCEEEEECCCCEECHHHHHHHHHHCCCEEEEECCCCCCCCCCCC--CC-CCEEEC
T ss_conf ------------776899998569997899927865468999999998199659996799999899878--99-988999
Q ss_pred CCC-HH-HHHHHHHHHHHHH--HHHHHHCCCC
Q ss_conf 970-16-8687756999999--9999977814
Q gi|254780300|r 282 SQS-II-QYQVEMGVAVRMA--IIKELLENQN 309 (316)
Q Consensus 282 ~~s-~v-~~Qa~Nrl~~~~A--lL~~~l~~~~ 309 (316)
|+. .. -+++..++ .+++ =+..++.++.
T Consensus 254 PHiAg~~t~e~~~~~-~~~a~~Ni~~fl~GkP 284 (303)
T PRK06436 254 PHVAGGMSGEIMQPA-VALAFENIKNFFEGKP 284 (303)
T ss_pred CCCCCCCHHHHHHHH-HHHHHHHHHHHHCCCC
T ss_conf 946645799999999-9999999999987999
No 33
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.47 E-value=0.066 Score=32.46 Aligned_cols=93 Identities=15% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++.++| .+|+.......+..|||++...-|-- -++.....+++.. ++++.++.+|+|..- ..-
T Consensus 135 eL~gktlGIiG---~G~IG~~vA~~~~~fgm~Vi~yDP~~-~~~~~~~~gv~~~-~l~ell~~sD~IslH~Plt------ 203 (524)
T PRK13581 135 ELYGKTLGVIG---LGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGVELV-ELDELLARADFITLHTPLT------ 203 (524)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHCCCEEE-EHHHHHHHCCEEEECCCCC------
T ss_conf 13698899977---67578999999985497478877764-4667987196686-0899731088999936786------
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 444455542023575889998379985995589
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
.+.. .-++.+.++++|+++++..|-
T Consensus 204 ------~eT~--~li~~~~~~~MK~ga~lIN~a 228 (524)
T PRK13581 204 ------PETR--NLIGAEELAKMKPGVRIINCA 228 (524)
T ss_pred ------HHHH--HHCCHHHHHHCCCCCEEEECC
T ss_conf ------1554--430799996068998699748
No 34
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=95.26 E-value=0.085 Score=31.76 Aligned_cols=116 Identities=21% Similarity=0.294 Sum_probs=82.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 3322222220122210001001035544330133446642013420553277532--22112123433005845603686
Q gi|254780300|r 141 QALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNV 218 (316)
Q Consensus 141 Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~a 218 (316)
|.+.|-+ ++-..--+-|.+++.+| ++.+-+.....+..+|+.|.++..+.. +..... |+++ ..++++++.+
T Consensus 7 qS~~d~i-~r~tn~llaGk~vvV~G---YG~~GkGvA~~~rg~Ga~V~V~EvDPi~aleA~md--Gf~V-~~~~ea~~~a 79 (162)
T pfam00670 7 ESLIDGI-KRATDVMIAGKVAVVCG---YGDVGKGCAASLKGQGARVIVTEIDPICALQAAME--GFQV-VTLEEVVKKA 79 (162)
T ss_pred CCHHHHH-HHHHCCEECCCEEEEEC---CCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--CCCC-CCHHHHHHCC
T ss_conf 0289999-88617657487899967---87667779998622999899994793069999864--9954-7888986049
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCC
Q ss_conf 2210001133123334444555420235758899983799859955899876874476797699
Q gi|254780300|r 219 DVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGS 282 (316)
Q Consensus 219 Dvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~ 282 (316)
|++++..-.. --|+.+.|+.+|+++|+....- ...||+-+-+..+
T Consensus 80 Di~VTaTG~~-----------------~vi~~eh~~~mKdgaIlaN~GH--fd~EIdv~~L~~~ 124 (162)
T pfam00670 80 DIFVTTTGNK-----------------DIITGEHMAKMKNDAIVCNIGH--FDNEIDVAWLNTN 124 (162)
T ss_pred CEEEECCCCC-----------------CCCCHHHHHHHCCCEEEECCCC--CCCEEEHHHHHCC
T ss_conf 9999924897-----------------7473999998448869987775--6522728888575
No 35
>PRK06932 glycerate dehydrogenase; Provisional
Probab=95.24 E-value=0.087 Score=31.68 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++..+| .+++.......+..||+++....+..... . -..+.++++.++.+|+|..- ..-.
T Consensus 144 ~L~gktvGIiG---~G~IG~~va~~~~~fGm~V~~~~~~~~~~-----~-~~~~~~l~ell~~sDiIslh~Plt~----- 209 (314)
T PRK06932 144 DVRGSTLGVFG---KGCLGSEVGRLATALGMKVLYAEHKGATE-----C-REGYTPFEEVLKQADIVTLHCPLTE----- 209 (314)
T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHCCCCEEEEECCCCCHH-----H-CCCCCCHHHHHHCCCEEEEEECCCC-----
T ss_conf 00386889976---35288899999852898899978766123-----2-3465759999623583689511301-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 4444555420235758899983799859955
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316)
+. ..-|+.+.++.+|+++++.-
T Consensus 210 -------eT--~~li~~~~l~~MK~~a~lIN 231 (314)
T PRK06932 210 -------ST--QNLINAETLALMKPTAFLIN 231 (314)
T ss_pred -------CC--CCHHHHHHHHCCCCCCEEEE
T ss_conf -------02--33666999735788719998
No 36
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=95.20 E-value=0.13 Score=30.66 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=111.9
Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC-----CCHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 342247999874136714652032100554200123421111234566-----312233222222201222100010010
Q gi|254780300|r 89 ENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTH-----EHPSQALLDAFAIRHFKGKISNLHIAI 163 (316)
Q Consensus 89 Es~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~-----~HP~Q~LaDl~Ti~e~~g~l~~l~ia~ 163 (316)
|+++=+...+...-..|.+.--.....++.+++....+ +|...+-++ |=||=.=|=+|.|++.=-.+-|=++.-
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~~Gisn~yL~~l~~~a~~~-Li~l~erDdvAIYNSIPtaEGAimMA~e~td~TIHgS~v~V 157 (288)
T TIGR02853 79 EKVVLKPELLEETKKHCTIYVGISNDYLEELAAEAGVK-LIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMV 157 (288)
T ss_pred CCEEECHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCC-EEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCEEEE
T ss_conf 72164668995207943899737765899999871960-24100357533445875567899999724896250134578
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC--CCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 3554433013344664201342055327753222112123433--00584560368622100011331233344445554
Q gi|254780300|r 164 CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVE--VFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIRE 241 (316)
Q Consensus 164 vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~--~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~ 241 (316)
+| -+||-+|....+..+|++|.+++=+...-.++...+++ .++.+++.+.++|+|+=+ .+.
T Consensus 158 lG---fGRtG~tiAr~f~aLGA~V~V~AR~~~dlARI~E~g~~P~~~~~L~~~v~e~DIviNT-----------iPa--- 220 (288)
T TIGR02853 158 LG---FGRTGMTIARTFSALGARVSVGARSSADLARITEMGLEPVPLNKLEEKVAEIDIVINT-----------IPA--- 220 (288)
T ss_pred EC---CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEC-----------CCC---
T ss_conf 84---4705689999997269805753178367899999606882716788765000247706-----------763---
Q ss_pred HCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 20235758899983799859955
Q gi|254780300|r 242 YKHVYSLDEKKLKYAKKDALVMH 264 (316)
Q Consensus 242 ~~~~~~v~~~~l~~a~~~ai~mH 264 (316)
--||.+.+++++++|+++-
T Consensus 221 ----Lvlt~~~l~~lp~~AviiD 239 (288)
T TIGR02853 221 ----LVLTKDVLSKLPKHAVIID 239 (288)
T ss_pred ----CCCCHHHHHHCCCCCEEEE
T ss_conf ----0036589952685848997
No 37
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.29 Score=28.33 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=115.1
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCCC--CCCCCCCCC
Q ss_conf 17822389999999999999999644204877521289769999607873378999-979876135211--123333210
Q gi|254780300|r 9 FVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSF-EVAGKLLGVHVI--NINTKNSAM 85 (316)
Q Consensus 9 fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SF-e~A~~~LGg~~i--~l~~~~s~~ 85 (316)
+|+-+.+.++-...|-....+ ...+... -++-.+.++=..|+.++.+.. ..++.++|.... .|..+.++
T Consensus 5 ildGk~iA~~i~~~l~~~v~~---~~~~~~~----~P~Lavilvg~d~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~~s~- 76 (288)
T PRK10792 5 IIDGKTIAQQVRSEVAQKVQA---RIAAGLR----APGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSE- 76 (288)
T ss_pred EEEHHHHHHHHHHHHHHHHHH---HHHCCCC----CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-
T ss_conf 725699999999999999999---9973899----98579999589844799999999999975997999866889999-
Q ss_pred CCCCCCCCHHHHHHHH-CCCCEEEECCCCCHHHHHHCCCCCCC--------CCCCC----CCCCCCHHHHHHHHHHHHCC
Q ss_conf 1333422479998741-36714652032100554200123421--------11123----45663122332222222012
Q gi|254780300|r 86 KKGENIADTIATLNAL-RPNIIVIRHPYSGAVNSLMHKIKGPS--------IINAG----DGTHEHPSQALLDAFAIRHF 152 (316)
Q Consensus 86 ~kgEs~~Dta~vls~~-~~d~iv~R~~~~~~~~~~a~~~s~pp--------VINag----~~~~~HP~Q~LaDl~Ti~e~ 152 (316)
|.+.+.+.-++.- .+|.|++-.|....+.+..--..++| -.|.| ..+...||-+++=+-.+.+.
T Consensus 77 ---~el~~~I~~LN~d~~V~GIiVQlPLP~~id~~~i~~~I~p~KDVDGl~~~N~G~L~~~~~~~~PcTp~av~~lL~~y 153 (288)
T PRK10792 77 ---AELLALIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERY 153 (288)
T ss_pred ---HHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf ---99999999996799878637836899885779998514988898879988998770699866787199999999974
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 22100010010355443301334466420134205532775322211212343300584560368622100011331233
Q gi|254780300|r 153 KGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316)
Q Consensus 153 ~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316)
.-+++|.+++.+|.. +-|-.-+..++..-|+.+++|.-. +.++++..++||+|+... +..+
T Consensus 154 ~i~~~Gk~vvVvGrS--~iVGkPla~lL~~~~atVTichs~--------------T~nl~~~~~~ADIvIsA~-G~p~-- 214 (288)
T PRK10792 154 NIDTFGLNAVVIGAS--NIVGRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAV-GKPG-- 214 (288)
T ss_pred CCCCCCCEEEEECCC--CCCCHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHHHCCEEEEEC-CCCC--
T ss_conf 756378889995676--634389999998669959862578--------------878899998578976404-8867--
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 3444455542023575889998379985995589
Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
-|+.+++ ++++++--..
T Consensus 215 --------------~i~~d~v---k~gaiVIDvG 231 (288)
T PRK10792 215 --------------FIPGEWI---KEGAIVIDVG 231 (288)
T ss_pred --------------CCCHHHC---CCCCEEEEEC
T ss_conf --------------5688882---8985899802
No 38
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.96 E-value=0.1 Score=31.20 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=55.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH
Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316)
.+.|.++.++| .+++.+.....+..||+++.+..+... +.... .-++++.++.+|+|..- ..-.
T Consensus 145 eL~gktvGIiG---~G~IG~~va~~~~~fg~~V~~~~~~~~-~~~~~------~~~l~ell~~sDivslh~Plt~----- 209 (317)
T PRK06487 145 ELEGKTLGLLG---HGELGGAVARLAEAFGMRVLIGQLPGR-PARPD------RLPLDELLPQVDALTLHCPLTE----- 209 (317)
T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCCC-CCCCC------CCCHHHHHHHCCEEEEECCCCC-----
T ss_conf 30597899978---676899999999748999999928888-64245------0579999873885687335761-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf 4444555420235758899983799859955
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316)
+.. .-++++.++.+|++++|..
T Consensus 210 -------~T~--~li~~~~l~~Mk~~a~lIN 231 (317)
T PRK06487 210 -------HTR--HLIGARELALMKPGALLIN 231 (317)
T ss_pred -------CCH--HHHHHHHHHHCCCCCEEEE
T ss_conf -------121--1579999985389978997
No 39
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.73 E-value=0.12 Score=30.73 Aligned_cols=91 Identities=15% Similarity=0.287 Sum_probs=58.0
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHH-HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHH
Q ss_conf 1000100103554433013344664-201342055327753222112123433005845603686221000-11331233
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIML-LNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIP 232 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~ 232 (316)
.+.|+++..+| .+|+....... +..||+++....|.. +......+....++++.++.+|+|..- ..-
T Consensus 143 ~l~~ktvGIiG---~G~IG~~vak~~a~~fgm~vi~yd~~~---~~~~~~~~~~~~~l~ell~~sDiIslh~Plt----- 211 (332)
T PRK08605 143 SIKDLKVAVIG---TGRIGLAVAKIFAKGYGCDVVAYDPFP---NAKAATYVDYKDTIEEAVEGADIVTLHMPAT----- 211 (332)
T ss_pred ECCCCEEEEEE---EEHHHHHHHHHHHHHCCCEEEEECCCC---CHHHHHCCEECCCHHHHHHHCCEEEEECCCC-----
T ss_conf 50377899997---436889999999875698267877887---6556620702168999986499999933688-----
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 344445554202357588999837998599558
Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316)
.+.+ .-|+.+.++.+|+++++--+
T Consensus 212 -------~~T~--~lI~~~~l~~MK~~a~lINt 235 (332)
T PRK08605 212 -------KYNT--YLFNADLFKHFKKGAVFVNC 235 (332)
T ss_pred -------HHHH--HHCCHHHHHHCCCCCEEEEE
T ss_conf -------3550--12189999722479689990
No 40
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.60 E-value=0.032 Score=34.55 Aligned_cols=77 Identities=27% Similarity=0.286 Sum_probs=55.8
Q ss_pred HHHCCCCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 220122210001001035--------544330133446642013420553277532221121234330058456036862
Q gi|254780300|r 148 AIRHFKGKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVD 219 (316)
Q Consensus 148 Ti~e~~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aD 219 (316)
-|.++.+ +.|.+|+..| |++.+ -+...+..+...|++|...-|............++..+|+++++++||
T Consensus 301 ~i~~~~~-l~Gk~iavlgLafKpnTDD~ReS-pa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aD 378 (414)
T COG1004 301 KILNHLG-LKGKTIAVLGLAFKPNTDDMRES-PALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGAD 378 (414)
T ss_pred HHHHHCC-CCCCEEEEEEEEECCCCCCCCCC-HHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEECCHHHHHHHCC
T ss_conf 9998468-77867999987416998420003-179999999977998999782543777730787167489999984098
Q ss_pred EEEEEEE
Q ss_conf 2100011
Q gi|254780300|r 220 VIMILRM 226 (316)
Q Consensus 220 vv~~~~~ 226 (316)
+++..+-
T Consensus 379 aivi~te 385 (414)
T COG1004 379 AIVINTE 385 (414)
T ss_pred EEEEECC
T ss_conf 9999555
No 41
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.03 E-value=0.42 Score=27.26 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 334224799987413671465203210055420012342111123456-----631223322222220122210001001
Q gi|254780300|r 88 GENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGT-----HEHPSQALLDAFAIRHFKGKISNLHIA 162 (316)
Q Consensus 88 gEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~-----~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316)
.|.+.=+-..+.....++.+.--.....+.++.+...++ ++--.... ++=||=.=+=.+.|++.--.+.|-++.
T Consensus 78 ~~~~~l~~~~~~~l~~~~~vf~G~~~~~l~~~~~~~~~~-~~d~~e~d~vAi~NaipTAEGai~~ai~~tp~ti~gs~~l 156 (296)
T PRK08306 78 NEKLVLTKELLEKTPEHCTIFSGIANPYLKELAETTGRK-LIELFERDDVAIYNSIPTAEGAIMMAIEHTPITIHGSNVL 156 (296)
T ss_pred CCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCC-EEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 787632299997469998799955998999999975983-6762002035556270148999999996599632476589
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--CCCCCHHHCCCCCCEEEEE
Q ss_conf 0355443301334466420134205532775322211212343--3005845603686221000
Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGV--EVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~--~~~~d~~ea~~~aDvv~~~ 224 (316)
.+| .+|+..++...+..+|++|+++.-+.-....+...|. -.+.++.+.+.++|+|+-+
T Consensus 157 VlG---~Gr~G~~lA~~l~~lGA~V~V~aR~~~~~a~a~~~G~~~v~~~~L~~~~~~~D~i~NT 217 (296)
T PRK08306 157 VLG---FGRTGMTLARTLKALGAKVKVGARKSAHLARITEMGYSPVHLSELAEEVGEADIIFNT 217 (296)
T ss_pred EEC---CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEHHHHHHHHCCCCEEEEC
T ss_conf 989---8689999999999779969999799999999997698587199999773569999989
No 42
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.34 E-value=0.15 Score=30.12 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316)
-+.|.+++.+| ++.+.+-....+.-+|+.|.++.-+.. +-.... |+++ ..++++++.+|+++|..-..
T Consensus 251 liaGK~vVV~G---YG~~GkG~A~~~rg~GA~ViVtEiDPi~ALqA~Md--Gf~V-~~m~ea~~~~DifVTaTGn~---- 320 (476)
T PTZ00075 251 MIAGKTVVVCG---YGDVGKGCAQALRGFGARVVVTEIDPICALQAAME--GYQV-VLLEDVVETADIFVTATGND---- 320 (476)
T ss_pred EECCCEEEEEE---CCCCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHC--CCEE-EEHHHHHHHCCEEEEECCCC----
T ss_conf 45475899950---45301214766535897899961680789998745--8787-56999883399999934997----
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCC
Q ss_conf 3444455542023575889998379985995589987687447679769
Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADG 281 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~ 281 (316)
--|+.+.|+.+|++||+-...- -..||+-..+..
T Consensus 321 -------------~VI~~~H~~~MKdgaIl~N~GH--fd~EId~~~L~~ 354 (476)
T PTZ00075 321 -------------DIITLEHFPRMKDDAIVGNIGH--FDTEIQVAWLKA 354 (476)
T ss_pred -------------CCCCHHHHHHHCCCEEEEECCC--CCHHEEHHHHHH
T ss_conf -------------7468999986537809994587--841040898873
No 43
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=93.02 E-value=0.37 Score=27.64 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=70.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316)
-+-|.+++.+| ++.+-+-....+.-+|+.|.++.-+.. +..... |++ +..++++++.+|+++|..-..
T Consensus 207 liaGK~vVV~G---YG~cGkG~A~r~rglGA~V~VtEvDPi~ALeA~mD--Gf~-V~~m~eaa~~~DifvT~TG~~---- 276 (430)
T pfam05221 207 MIAGKVAVVCG---YGDVGKGCAASLRGQGARVIVTEIDPICALQAAME--GYQ-VVTLEEVVKDADIFVTTTGCV---- 276 (430)
T ss_pred EECCCEEEEEC---CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHC--CCC-CCCHHHHHHHCCEEEEECCCC----
T ss_conf 34276799955---67535789999842798899954785899999855--884-577999985599999936988----
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHC
Q ss_conf 344445554202357588999837998599558998768744767976
Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVAD 280 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d 280 (316)
--|+.+.|+.+|++||+-...- -..||+-+-+.
T Consensus 277 -------------~vI~~~H~~~MKdgaIl~N~GH--fd~EId~~~L~ 309 (430)
T pfam05221 277 -------------DIIVGRHFMNMKKDAIVCNIGH--FDCEIDVGWLN 309 (430)
T ss_pred -------------CCCCHHHHHHHCCCEEEEECCC--CCHHEEHHHHH
T ss_conf -------------7568999986417849995688--71413378774
No 44
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.85 E-value=0.33 Score=27.98 Aligned_cols=242 Identities=19% Similarity=0.293 Sum_probs=122.5
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE-EEECCCCHHHHHHHHHHHHHCCCCCCC--C
Q ss_conf 7777741782238999999999999999964420487752128976999-960787337899997987613521112--3
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQIN-LFLETSTRTQTSFEVAGKLLGVHVINI--N 79 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~-lF~kpStRTR~SFe~A~~~LGg~~i~l--~ 79 (316)
.|.-|| +++.+..+.+|+.-=.----+...+.++. ...+|+|..++. +--++-|-- +-..-..+|..+.-- +
T Consensus 4 ~~~vkD-~~La~~G~~~Iewa~~~MPvL~~ir~~~~-~~kPl~G~rI~~clHle~kTA~---L~~tL~~~GAeV~~~~~N 78 (427)
T PRK05476 4 DYKVAD-ISLADWGRKEIEWAETEMPGLMAIREEFA-AEKPLKGARIAGCLHMTIQTAV---LIETLKALGAEVRWASCN 78 (427)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCCCCEEEEEEEECHHHHH---HHHHHHHCCCEEEEECCC
T ss_conf 530367-02306668999999977979999999863-3699899889999830088999---999999849989995479
Q ss_pred CCCCC---------------CCCCCCCCCHHH----HHHHHCCCCEEEECCCCCHH------------------------
Q ss_conf 33321---------------013334224799----98741367146520321005------------------------
Q gi|254780300|r 80 TKNSA---------------MKKGENIADTIA----TLNALRPNIIVIRHPYSGAV------------------------ 116 (316)
Q Consensus 80 ~~~s~---------------~~kgEs~~Dta~----vls~~~~d~iv~R~~~~~~~------------------------ 116 (316)
|-++| -.+||+.++-.. +|. +.+++++= +.+.+
T Consensus 79 plSTQDdvaAaL~~~Gi~VfA~~g~t~eey~~~~~~~L~-~~P~iiiD---DG~Dl~~~lh~~~~~~~~~i~G~~EETTT 154 (427)
T PRK05476 79 PFSTQDHAAAALAAAGIPVFAWKGETLEEYWEAIERALD-WGPNMILD---DGGDLTLLVHTERPELLANIKGVTEETTT 154 (427)
T ss_pred CCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHC-CCCCEEEE---CCCHHHHHHHHHHHHHHHHCEECCCCCCH
T ss_conf 876457999999868916999789899999999999755-59987875---65228999998605667541630347526
Q ss_pred -----HHHHCC--CCCCCCCCCCCCCC------CC-HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHC
Q ss_conf -----542001--23421111234566------31-22332222222012221000100103554433013344664201
Q gi|254780300|r 117 -----NSLMHK--IKGPSIINAGDGTH------EH-PSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNT 182 (316)
Q Consensus 117 -----~~~a~~--~s~ppVINag~~~~------~H-P~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~ 182 (316)
..+++. ...| +||.-|..- -| -=|.+.|-+ ++-..--+.|.+++.+| ++++-+-....+.-
T Consensus 155 Gv~RL~am~~~g~L~~P-viavNDa~tK~~FDNrYGtGqS~~dgi-~r~Tn~llaGK~vVV~G---YG~~GkG~A~~arg 229 (427)
T PRK05476 155 GVHRLYAMAKDGELKFP-AINVNDSVTKSKFDNRYGTGESLLDGI-KRATNVLIAGKVVVVAG---YGDVGKGSAQRLRG 229 (427)
T ss_pred HHHHHHHHHHCCCCCCC-EEEECCHHHHHHCCCCCCCCCCHHHHH-HHHHCCEECCCEEEEEC---CCCCCCHHHHHHHC
T ss_conf 38999999866977777-798655344222245533462499999-98735212573799955---66556008998741
Q ss_pred CCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
Q ss_conf 3420553277532--22112123433005845603686221000113312333444455542023575889998379985
Q gi|254780300|r 183 MGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDA 260 (316)
Q Consensus 183 ~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~a 260 (316)
+|++|.++.-+.. +.....+ ++ +..++++++.+|+++|..-.. --|+.+.|+.+|++|
T Consensus 230 ~GA~ViVtEvDPi~ALeA~mDG--f~-V~~~~~a~~~~DifiT~TG~~-----------------~vI~~~h~~~MKdga 289 (427)
T PRK05476 230 LGARVIVTEIDPICALQAAMDG--FE-VMTMEEAAEKADIFVTATGNK-----------------DVITAEHMEAMKDGA 289 (427)
T ss_pred CCCEEEEEECCHHHHHHHHHCC--CC-CCCHHHHHHHCCEEEEECCCC-----------------CCCCHHHHHHHCCCE
T ss_conf 8987999804737999988627--83-565899862089999904895-----------------724899998507882
Q ss_pred EEECCCCCCCCCCCCHHHHC
Q ss_conf 99558998768744767976
Q gi|254780300|r 261 LVMHPGPINRNYEISSSVAD 280 (316)
Q Consensus 261 i~mHcLP~~Rg~Ev~~~v~d 280 (316)
|+....- -..||+-+-+.
T Consensus 290 Il~N~GH--fd~EIdv~~L~ 307 (427)
T PRK05476 290 IVCNIGH--FDNEIDVAALE 307 (427)
T ss_pred EEECCCC--CCCEEEHHHHH
T ss_conf 9976777--75043288775
No 45
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.78 E-value=0.4 Score=27.39 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=70.7
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH
Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316)
-+.|.+++.+| ++.+-+-....+.-+|++|.++..+.. +.....+ ++ +..++++++.+|+++|..-..
T Consensus 199 liaGK~vVV~G---YG~~GkG~A~r~rglGA~V~VtEvDPi~ALeA~mDG--f~-V~~m~~a~~~~DifiTaTGn~---- 268 (413)
T cd00401 199 MIAGKVAVVAG---YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--YE-VMTMEEAVKEGDIFVTTTGNK---- 268 (413)
T ss_pred EECCCEEEEEC---CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHCC--CC-CCCHHHHHHHCCEEEEECCCC----
T ss_conf 21377799945---776356889988658988999717758899998568--94-577999972389999933887----
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCC
Q ss_conf 3444455542023575889998379985995589987687447679769
Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADG 281 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~ 281 (316)
--|+.+.|..+|++||+....- -..||+-+-+..
T Consensus 269 -------------~VI~~eH~~~MKdgaIl~N~GH--fd~EId~~~L~~ 302 (413)
T cd00401 269 -------------DIITGEHFEQMKDGAIVCNIGH--FDVEIDVKGLKE 302 (413)
T ss_pred -------------CCCCHHHHHHHCCCEEEEECCC--CCHHEEHHHHHH
T ss_conf -------------7373999998458869980677--723230998870
No 46
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=92.32 E-value=0.33 Score=27.98 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=72.6
Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCC----CCCCCCCCCC--CCCCCHHHCCCCCCEEE
Q ss_conf 012221000100103554433013344664201342-0553277532----2211212343--30058456036862210
Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITL----LPKDISNMGV--EVFHDMQKGLKNVDVIM 222 (316)
Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~----~~~~~~~~~~--~~~~d~~ea~~~aDvv~ 222 (316)
++.+|++++.+++.+|- +-++...+..+...|+ +++++....- +.+...+..+ .-++++.+.+.++|+|+
T Consensus 4 ~~~~~~l~~~~vlVIGa---G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI 80 (134)
T pfam01488 4 KKIFGDLKGKKVLLIGA---GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVI 80 (134)
T ss_pred HHHHCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEE
T ss_conf 77638814898999996---099999999999759988999547578999999984997258985135441363199999
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC-CEEECCCCCCCCCCCCHHHHCCCCCHH
Q ss_conf 0011331233344445554202357588999837998-599558998768744767976997016
Q gi|254780300|r 223 ILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKD-ALVMHPGPINRNYEISSSVADGSQSII 286 (316)
Q Consensus 223 ~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~-ai~mHcLP~~Rg~Ev~~~v~d~~~s~v 286 (316)
+..-.. .+-++.+.++.+.+. .++==++| |+ |+.+|-+-+...+
T Consensus 81 ~aT~s~----------------~~ii~~~~~~~~~~~~~iiDLavP--rn--vd~~v~~l~~v~l 125 (134)
T pfam01488 81 SATSAP----------------TPIITKEMVEEALKGLLFVDIAVP--RD--IEPEVGELEGVYV 125 (134)
T ss_pred EECCCC----------------CCEECHHHHHHCCCCEEEEEECCC--CC--CCHHHCCCCCEEE
T ss_conf 925999----------------736489999744398599983478--88--6654545698699
No 47
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.10 E-value=0.36 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHHHHHHC-CCCEEEECCCCCHHHHHH
Q ss_conf 799987413-671465203210055420
Q gi|254780300|r 94 TIATLNALR-PNIIVIRHPYSGAVNSLM 120 (316)
Q Consensus 94 ta~vls~~~-~d~iv~R~~~~~~~~~~a 120 (316)
..+.|..+. .|+|+.-+.+.=.+.+++
T Consensus 96 vf~eLd~~~~~~aIiASsTSgl~~S~l~ 123 (489)
T PRK07531 96 VLAEIEAAARPDALIGSSTSGFKPSELQ 123 (489)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHH
T ss_conf 9999997679983898536658899998
No 48
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.44 E-value=0.81 Score=25.40 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHCCCCEEEECC
Q ss_conf 3013344664201342055327
Q gi|254780300|r 170 SRVARSDIMLLNTMGARIRVIA 191 (316)
Q Consensus 170 ~~v~~S~~~~~~~~g~~v~~~~ 191 (316)
-.++......+..+|....++.
T Consensus 162 ~~tv~~a~~~~~~iGk~PV~v~ 183 (321)
T PRK07066 162 PEAVDAAMGIYRALGMRPLHVR 183 (321)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999999998199788992
No 49
>PRK05442 malate dehydrogenase; Provisional
Probab=90.17 E-value=0.79 Score=25.47 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=5.0
Q ss_pred CHHHHHHHHHH
Q ss_conf 12233222222
Q gi|254780300|r 138 HPSQALLDAFA 148 (316)
Q Consensus 138 HP~Q~LaDl~T 148 (316)
-|-|.-.|++.
T Consensus 93 kPGmtR~DLl~ 103 (325)
T PRK05442 93 GPGMERKDLLK 103 (325)
T ss_pred CCCCCHHHHHH
T ss_conf 99974899997
No 50
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.63 E-value=0.49 Score=26.82 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 63122332222222012221000100103554433013344664201342055327753222112123433005845603
Q gi|254780300|r 136 HEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGL 215 (316)
Q Consensus 136 ~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~ 215 (316)
.-=||-.++=+.-+.+..-++.|.+++.+|. .+-|-+-+..++..-|+.|++|.-. +.++++..
T Consensus 22 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvViGr--S~iVG~Pla~lL~~~~atVt~chs~--------------T~~l~~~~ 85 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGR--SNIVGKPLAALLLNRNATVTVCHSK--------------TKNLKEHT 85 (168)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCEEEEECC--CCCCHHHHHHHHHHCCCEEEEECCC--------------CCCHHHHH
T ss_conf 8869849999999999498877856999878--7300899999998489979997689--------------88979974
Q ss_pred CCCCEEEEE
Q ss_conf 686221000
Q gi|254780300|r 216 KNVDVIMIL 224 (316)
Q Consensus 216 ~~aDvv~~~ 224 (316)
++||+|+..
T Consensus 86 ~~ADIvIsA 94 (168)
T cd01080 86 KQADIVIVA 94 (168)
T ss_pred HHCCEEEEE
T ss_conf 104535541
No 51
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=89.38 E-value=1.3 Score=24.19 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=86.3
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH
Q ss_conf 00010010355443301334466420134205532--7753222112123433005845603686221000113312333
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVI--APITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~--~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316)
+-|.+++.+| ++++-+=....+.-+|+.|.+. -|..-+.....++ ++. .++||.+..|+.+|..-..
T Consensus 209 iAGk~vVVaG---YGw~G~G~A~r~~G~GA~V~VtEvdPi~ALeA~MdGF--~V~-~m~eA~~~gdifiT~TG~~----- 277 (422)
T TIGR00936 209 IAGKTVVVAG---YGWCGKGIAMRARGLGARVIVTEVDPIRALEAAMDGF--RVM-TMEEAAKIGDIFITATGNK----- 277 (422)
T ss_pred HCCCEEEEEC---CCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHCCCCC--EEE-EHHHHHHHCCEEEECCCCC-----
T ss_conf 5388789970---3863078999850599779998207336887314783--341-1788755098899815880-----
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 444455542023575889998379985995589987687447679769970168687756999999999997781422
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNKI 311 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~~ 311 (316)
--|..+.+..+|++||+--.+= -++||+-.-++ ++|....-+|..+=.|.|.+..+|
T Consensus 278 ------------~vI~~~h~~~MkdgAI~aN~GH--FdvEI~~~~Le-------~~a~~~~~~r~~v~~Y~L~dGr~i 334 (422)
T TIGR00936 278 ------------DVIREEHFEKMKDGAILANAGH--FDVEIDVKALE-------ELAKEKREVRPQVDEYKLKDGRRI 334 (422)
T ss_pred ------------HHCCHHHHHHCCCCCEEECCCC--CCCCCCHHHHH-------HHHHHHHHHHHCCCEEECCCCCEE
T ss_conf ------------1036488850667728853576--53111658998-------876677754201134463889789
No 52
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=88.97 E-value=0.6 Score=26.27 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 31223322222220122210001001035544330133446642013420553277532221121234330058456036
Q gi|254780300|r 137 EHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLK 216 (316)
Q Consensus 137 ~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~ 216 (316)
-=||-.++=+.-+.+..-+++|.+++.+|. .+.|-.-+..++..-|+.+++|.- .+.|+++.++
T Consensus 15 ~~PcTp~ai~~lL~~~~i~l~Gk~vvViGr--S~iVG~Pla~lL~~~~atVtichs--------------~T~nl~~~~~ 78 (159)
T pfam02882 15 FVPCTPRGIMELLKRYGIDLAGKNVVVIGR--SNIVGKPLALLLLNANATVTVCHS--------------KTKDLAEITR 78 (159)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEECC--------------CCCCHHHHHH
T ss_conf 969649999999998399857866999888--731489999999877998999818--------------9999789630
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 86221000113312333444455542023575889998379985995589
Q gi|254780300|r 217 NVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 217 ~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
+||+|+... +..+ -|+.+++ |+++++.-+.
T Consensus 79 ~ADIvI~A~-G~p~----------------~i~~~~i---k~gavvIDvG 108 (159)
T pfam02882 79 EADIVVVAV-GKPG----------------LIKADWV---KPGAVVIDVG 108 (159)
T ss_pred CCCEEEEEC-CCCC----------------CCCHHHC---CCCCEEEEEC
T ss_conf 034442315-8855----------------0569885---8998899802
No 53
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.53 E-value=0.83 Score=25.34 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=16.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 554433013344664201342055327
Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIA 191 (316)
Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~ 191 (316)
|.-....+.......+..+|....++.
T Consensus 156 g~~Ts~~~v~~~~~~~~~lGk~PV~v~ 182 (308)
T PRK06129 156 APWTAPATVARAHALYRAAGQSPVRLR 182 (308)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999898999999999998399889990
No 54
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.37 E-value=0.56 Score=26.45 Aligned_cols=72 Identities=24% Similarity=0.468 Sum_probs=46.8
Q ss_pred CCCCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf 122210001001035--------544330133446642013420553277532221121234330058456036862210
Q gi|254780300|r 151 HFKGKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIM 222 (316)
Q Consensus 151 e~~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~ 222 (316)
+..+.+++.+|+..| |+++| .+-.++..+...|++|.+.-|..- ++... ++....+++++++++|+|+
T Consensus 306 ~~l~~~~~~~I~ilGlafK~~tdD~R~S-ps~~ii~~L~~~g~~V~~~DP~v~-~~~~~--~~~~~~~~~~~~~~aD~ii 381 (411)
T TIGR03026 306 DLLGPLKGKTVLILGLAFKPNTDDVRES-PALDIIELLKEKGAKVKAYDPLVP-EEEVK--GLPLIDDLEEALKGADALV 381 (411)
T ss_pred HHHHCCCCCEEEEEEEEECCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCCCC-HHHHH--CCCCCCCHHHHHHCCCEEE
T ss_conf 8663116661378741106999853458-299999999978898999999899-89981--2777799999984698899
Q ss_pred -EEEE
Q ss_conf -0011
Q gi|254780300|r 223 -ILRM 226 (316)
Q Consensus 223 -~~~~ 226 (316)
.+.|
T Consensus 382 i~t~h 386 (411)
T TIGR03026 382 ILTDH 386 (411)
T ss_pred EECCC
T ss_conf 95598
No 55
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=88.24 E-value=0.53 Score=26.62 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=32.4
Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCC----CCCCCCHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 521289769999607873378999979876135211-12333321013----3342247999874136714652032100
Q gi|254780300|r 41 TTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVI-NINTKNSAMKK----GENIADTIATLNALRPNIIVIRHPYSGA 115 (316)
Q Consensus 41 ~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i-~l~~~~s~~~k----gEs~~Dta~vls~~~~d~iv~R~~~~~~ 115 (316)
.++|+||+++.+=+-.--|- -..-+..-|-+++ -+.+..+++.| |-.+.+... .... +|+|++-.|+...
T Consensus 13 l~~LkgK~iaIIGYGsQG~a---halNlRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~e-a~k~-ADvim~L~PDe~q 87 (338)
T COG0059 13 LDLLKGKKVAIIGYGSQGHA---QALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEE-AAKR-ADVVMILLPDEQQ 87 (338)
T ss_pred HHHHCCCEEEEEECCHHHHH---HHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEECHHH-HHHC-CCEEEEECCHHHH
T ss_conf 45654986999902708788---87422424874799856887248999966977513999-8522-7999981865467
No 56
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.70 E-value=0.67 Score=25.95 Aligned_cols=115 Identities=26% Similarity=0.349 Sum_probs=64.6
Q ss_pred CCCCCCCCCEEECCCCCCCCHHHHHHHHHH---CCCCE----EEECC-CCCC------CC--CCC---CCCCCCCCCCHH
Q ss_conf 222100010010355443301334466420---13420----55327-7532------22--112---123433005845
Q gi|254780300|r 152 FKGKISNLHIAICGDILHSRVARSDIMLLN---TMGAR----IRVIA-PITL------LP--KDI---SNMGVEVFHDMQ 212 (316)
Q Consensus 152 ~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~---~~g~~----v~~~~-P~~~------~~--~~~---~~~~~~~~~d~~ 212 (316)
+.+.+..++|+..|- .+-++.|++-.++ .||.+ +++.. |... .. +|- .-.++.++.|++
T Consensus 117 ~~~~~~Pl~V~VTgA--ag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcAfPlL~~v~~t~d~~ 194 (452)
T cd05295 117 LRSKINPLQVCITNA--SAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLD 194 (452)
T ss_pred HHHCCCCCEEEEECC--CHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHCCCCCCCEEEECCHH
T ss_conf 871588746999468--447689999997376734898717999547740778863633567653440017106767999
Q ss_pred HCCCCCCEEEEEEEC--CHHHHHHHHHHHHHHCCCCCCCHHHH-HHCCCCCEEECCC--CCCC
Q ss_conf 603686221000113--31233344445554202357588999-8379985995589--9876
Q gi|254780300|r 213 KGLKNVDVIMILRMQ--QERIPRSLIPSIREYKHVYSLDEKKL-KYAKKDALVMHPG--PINR 270 (316)
Q Consensus 213 ea~~~aDvv~~~~~~--~e~~~~~~~~~~~~~~~~~~v~~~~l-~~a~~~ai~mHcL--P~~R 270 (316)
+|++++|+++...-- .++. ++..-.+.-..-|+.-.+.+ +.|+++++++=.. |++-
T Consensus 195 ~AF~dad~ailvga~pr~~gm--er~dlL~~n~~IF~~qG~aln~~Ak~~vKVLVvG~nPaNt 255 (452)
T cd05295 195 VAFKDAHVIVLLDDFLIKEGE--DLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNL 255 (452)
T ss_pred HHHCCCCEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 985579889995884788887--1889999877999999999985445686699967886516
No 57
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=87.31 E-value=0.96 Score=24.93 Aligned_cols=102 Identities=11% Similarity=0.186 Sum_probs=63.1
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC---CCC-----CCCCHHHCCCCCCEEEEEE
Q ss_conf 21000100103554433013344664201342055327753222112123---433-----0058456036862210001
Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNM---GVE-----VFHDMQKGLKNVDVIMILR 225 (316)
Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~---~~~-----~~~d~~ea~~~aDvv~~~~ 225 (316)
+.+...+++.+|- +++...-+..+..+|+.+++.--..-..+..... .+. ....+.+.+.++|+|+...
T Consensus 16 ~gv~pa~vvViG~---Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~aDvvIgav 92 (150)
T pfam01262 16 GGVPPAKVVVIGG---GVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDIFSNCEYLAEAIAEADLVIGTV 92 (150)
T ss_pred CCCCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEEEE
T ss_conf 9976777999898---7899999999986799899972999999999986476200166537999999974387999720
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf 1331233344445554202357588999837998599558998768
Q gi|254780300|r 226 MQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRN 271 (316)
Q Consensus 226 ~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg 271 (316)
....+ +.+--|+++.++.+||.+++-- .-+..|
T Consensus 93 l~pg~------------~aP~lIt~~mv~~MkpGsVIVD-vaiDqG 125 (150)
T pfam01262 93 LIPGA------------RAPKLVTREMVKTMKPGSVIVD-VAIDQG 125 (150)
T ss_pred ECCCC------------CCCCEECHHHHHHHCCCCEEEE-EECCCC
T ss_conf 31788------------6992207999984479939999-620489
No 58
>PRK07232 malic enzyme; Reviewed
Probab=86.65 E-value=2.6 Score=22.09 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=100.1
Q ss_pred CCCCCCHHHHHHHHCC-----CCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHCC-CCCCCCC
Q ss_conf 3342247999874136-----714652032100554200123421111234566312233--2222222012-2210001
Q gi|254780300|r 88 GENIADTIATLNALRP-----NIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQA--LLDAFAIRHF-KGKISNL 159 (316)
Q Consensus 88 gEs~~Dta~vls~~~~-----d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~--LaDl~Ti~e~-~g~l~~l 159 (316)
-|.+-+|++.+..-+. |+-.-+++. ..+.+-+...+| |.- | + .|=|-. +|-++-=.+. .++++.+
T Consensus 115 ~~~~i~~v~~~~ptfgginledi~ap~cf~--ie~~l~~~~~ip-v~h--d-d-qhgtaiv~~a~l~nal~~~~k~~~~~ 187 (753)
T PRK07232 115 PDKFIEAVAALEPTFGGINLEDIKAPECFY--IEQKLRERMDIP-VFH--D-D-QHGTAIISAAALLNALELVGKKIEDV 187 (753)
T ss_pred HHHHHHHHHHHCCCCCEECHHHCCCCCHHH--HHHHHHHHCCCC-EEC--C-C-CCHHHHHHHHHHHHHHHHHCCCHHHE
T ss_conf 899999999858886603798868973238--999999865998-233--7-7-65189999999999999838646671
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCE---EEECCCCCCCCC----CCCCC-----CCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 001035544330133446642013420---553277532221----12123-----433005845603686221000113
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGAR---IRVIAPITLLPK----DISNM-----GVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~---v~~~~P~~~~~~----~~~~~-----~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
||+..|- +.-.-+-..++..+|++ +.+|--++..-+ +.... .-+-..+++|++++|||..-.+..
T Consensus 188 kiv~~Ga---Gaa~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfig~S~~ 264 (753)
T PRK07232 188 KIVVSGA---GAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAQDTDARTLAEAIEGADVFLGLSAA 264 (753)
T ss_pred EEEEECC---CHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEECCCC
T ss_conf 8999788---6888999999998499801079995778656888776249999863468988699995799789974779
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHH---------CCCCCHHHHHHHHH
Q ss_conf 3123334444555420235758899983799859955899876874476797---------69970168687756
Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVA---------DGSQSIIQYQVEMG 293 (316)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~---------d~~~s~v~~Qa~Nr 293 (316)
=-++.++++.+.++.|++-+ +|..-||..+.. -.-||=|=.|.-|-
T Consensus 265 ------------------~~~~~~mv~~Ma~~pivfal--ANP~PEI~p~~a~~~r~d~i~aTGRsD~pNQvNNv 319 (753)
T PRK07232 265 ------------------GVLTPEMVKSMADNPIIFAL--ANPDPEITPEEAKAVRPDAIIATGRSDYPNQVNNV 319 (753)
T ss_pred ------------------CCCCHHHHHHHCCCCEEEEC--CCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCHH
T ss_conf ------------------97899999862878779856--89897769999997604379834888985411111
No 59
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=86.35 E-value=0.69 Score=25.85 Aligned_cols=213 Identities=21% Similarity=0.289 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC-------
Q ss_conf 873378999979876135211123333210133----342247999874136714652032100554200123-------
Q gi|254780300|r 56 TSTRTQTSFEVAGKLLGVHVININTKNSAMKKG----ENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK------- 124 (316)
Q Consensus 56 pStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kg----Es~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s------- 124 (316)
.||-+-+ .|+|-..+||+.|. .+++++-| |.+..+++.+-.||+-++|+--++.|...+..++..
T Consensus 428 DSs~~~v-leaGLk~~qGKciv---NSislkdGDGPE~~F~~~a~l~k~yGAavVvmafDEeGQA~t~~~K~EI~~RAY~ 503 (1265)
T TIGR02082 428 DSSEWEV-LEAGLKCIQGKCIV---NSISLKDGDGPEERFLEKAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYE 503 (1265)
T ss_pred CCCHHHH-HHHHHHHCCCEEEE---EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5743799-97624303884687---3202566888489999999999844984898701543001037889999999999
Q ss_pred -------C--------CCCCCCCCCCCCCHHHHHHHHHHHHCCC---------CCCCCCCEEECCCCCCCCHHHH-HHHH
Q ss_conf -------4--------2111123456631223322222220122---------2100010010355443301334-4664
Q gi|254780300|r 125 -------G--------PSIINAGDGTHEHPSQALLDAFAIRHFK---------GKISNLHIAICGDILHSRVARS-DIML 179 (316)
Q Consensus 125 -------~--------ppVINag~~~~~HP~Q~LaDl~Ti~e~~---------g~l~~l~ia~vGD~~~~~v~~S-~~~~ 179 (316)
. |-|..-++|--||=--++.=+=.+++.+ |.++|+++.+=|--.==.+.|| ++.=
T Consensus 504 ~lt~~~gfpp~~IiFDPn~ltiaTGiEEh~~ya~~fI~A~r~IK~~LP~a~isgGvSNvSFsfrGn~a~R~a~hsVFLy~ 583 (1265)
T TIGR02082 504 LLTEKVGFPPEDIIFDPNILTIATGIEEHRRYAIDFIEAIRWIKEELPDAKISGGVSNVSFSFRGNPAVREALHSVFLYH 583 (1265)
T ss_pred HHHHHCCCCHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99974489802202121311011476421256789999999999658972885340222126578718999986899999
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCC--CEEEEEE-ECCHHHHHHHHHHHHHHCCCCC-CCHH--HH
Q ss_conf 201342055327753222112123433005845603686--2210001-1331233344445554202357-5889--99
Q gi|254780300|r 180 LNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNV--DVIMILR-MQQERIPRSLIPSIREYKHVYS-LDEK--KL 253 (316)
Q Consensus 180 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~a--Dvv~~~~-~~~e~~~~~~~~~~~~~~~~~~-v~~~--~l 253 (316)
|-.-|||.-++.+-.+.+ ++|+++=++++ |+||--| ..-|+...+++ .++.+.|+ ++.+ .-
T Consensus 584 ai~aGmDmgIVnA~~i~~----------y~dI~~Elr~~~eDli~~rrefeGe~~~~e~L---l~la~~y~g~~~~~~k~ 650 (1265)
T TIGR02082 584 AIRAGMDMGIVNAGKILV----------YDDIDKELREVVEDLILNRREFEGEREATEPL---LELAQLYEGTTTKSDKE 650 (1265)
T ss_pred HHHCCCCCCCCCHHCCCH----------HHCCCHHHHHHHHHHHHCHHHCCCCCCCCHHH---HHHHHHHCCCCCCHHHH
T ss_conf 995146100547101681----------22387889999875431101237998775468---99999843667410277
Q ss_pred HHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHH
Q ss_conf 83799859955899876874476797699701686877
Q gi|254780300|r 254 KYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVE 291 (316)
Q Consensus 254 ~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~ 291 (316)
+.... +. -+|+. +=..-.+++|.+..+-+-.|
T Consensus 651 ~~~~e-wr---~~pv~--ERL~~~lV~G~~~~ieeD~e 682 (1265)
T TIGR02082 651 AQQAE-WR---NLPVE--ERLEYALVKGEREGIEEDLE 682 (1265)
T ss_pred HHHHH-HC---CCCHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 87566-41---78877--88867875335666899999
No 60
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=86.27 E-value=1.5 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=5.4
Q ss_pred HHHHHHCCCCEEEEC
Q ss_conf 466420134205532
Q gi|254780300|r 176 DIMLLNTMGARIRVI 190 (316)
Q Consensus 176 ~~~~~~~~g~~v~~~ 190 (316)
-++.+..-|.++.++
T Consensus 98 E~~~L~~~GI~~Evv 112 (242)
T TIGR01469 98 EAEALAEAGIPFEVV 112 (242)
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999999668979873
No 61
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.25 E-value=0.86 Score=25.25 Aligned_cols=70 Identities=13% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCC----CCCC-----CCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 000100103554433013344664201342-05532775322211----2123-----4330058456036862210001
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKD----ISNM-----GVEVFHDMQKGLKNVDVIMILR 225 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~----~~~~-----~~~~~~d~~ea~~~aDvv~~~~ 225 (316)
++++.|+.|..-...| .-|...+++.||. ++.++.|.....++ ..++ +.+++++++||+.+.|+|+.++
T Consensus 2 ~~~i~iVLVep~~~gN-IG~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~~v~aTt 80 (242)
T COG0565 2 LENIRIVLVEPSHPGN-IGSVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALADCDLVVATT 80 (242)
T ss_pred CCCCEEEEECCCCCCC-HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCHHHHCCCEEECCHHHHHCCCCEEEEEC
T ss_conf 8761799975888752-799999998679664899789889889999986466666506766467999960788799805
Q ss_pred E
Q ss_conf 1
Q gi|254780300|r 226 M 226 (316)
Q Consensus 226 ~ 226 (316)
.
T Consensus 81 a 81 (242)
T COG0565 81 A 81 (242)
T ss_pred C
T ss_conf 6
No 62
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.61 E-value=1.8 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=15.2
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 554433013344664201342055327
Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIA 191 (316)
Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~ 191 (316)
|.-....+.......+..+|....+++
T Consensus 158 g~~Ts~e~~~~~~~~~~~lgk~pvvv~ 184 (288)
T PRK08293 158 HPGTDPEVYETVVAFAKAIGMVPIVLK 184 (288)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999999999999998399899985
No 63
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.32 E-value=0.99 Score=24.86 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=48.3
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCC-CH-HHCCCCCCEEEEEE
Q ss_conf 201222100010010355443301334466420134205532775322211212-3433005-84-56036862210001
Q gi|254780300|r 149 IRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISN-MGVEVFH-DM-QKGLKNVDVIMILR 225 (316)
Q Consensus 149 i~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~-~~~~~~~-d~-~ea~~~aDvv~~~~ 225 (316)
+.=.+=+++|.++..+| +++|+.--+..+...|+++++++|+-. ++ +.. ..++... .. .+-++++++|+...
T Consensus 4 ~~Pifl~l~~k~vLVvG---GG~VA~rK~~~Ll~~ga~VtVvsp~~~-~e-l~~l~~i~~~~r~~~~~dl~~~~lViaAT 78 (157)
T PRK06719 4 MYPLMFNLHNKVVVIIG---GGKIAYRKASGLKDTGAFVTVVSPEIC-EE-MKELPYITWKQKTFSNDDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCC-HH-HHHCCCEEEECCCCCHHHHCCCEEEEECC
T ss_conf 43068975998799988---989999999999878796999999868-99-98455708870467846837843999868
No 64
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=85.15 E-value=3.1 Score=21.62 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=91.8
Q ss_pred CCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCHHH--
Q ss_conf 289769999607873378999-979876135211123--3332101333422479998741-3671465203210055--
Q gi|254780300|r 44 LQGLTQINLFLETSTRTQTSF-EVAGKLLGVHVININ--TKNSAMKKGENIADTIATLNAL-RPNIIVIRHPYSGAVN-- 117 (316)
Q Consensus 44 L~gk~~~~lF~kpStRTR~SF-e~A~~~LGg~~i~l~--~~~s~~~kgEs~~Dta~vls~~-~~d~iv~R~~~~~~~~-- 117 (316)
-++-.+.+.=..|+-++.+.- ..++...|......+ .+.++ |.+.+.+.-++.= .++.|++--|....+.
T Consensus 30 ~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~----~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~ 105 (283)
T COG0190 30 KPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITE----EELLALIDELNADPEVDGILVQLPLPKHLDEQ 105 (283)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----HHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf 84389999679778999999999999981973689857875789----99999999960898775799947788777888
Q ss_pred HHHCCCC---C---CCCCCCCC----CCCCCHHHHHHHHHHHHCCC-CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 4200123---4---21111234----56631223322222220122-210001001035544330133446642013420
Q gi|254780300|r 118 SLMHKIK---G---PSIINAGD----GTHEHPSQALLDAFAIRHFK-GKISNLHIAICGDILHSRVARSDIMLLNTMGAR 186 (316)
Q Consensus 118 ~~a~~~s---~---ppVINag~----~~~~HP~Q~LaDl~Ti~e~~-g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~ 186 (316)
.+.+..+ . .--.|.|- -..-+||-..+= ++|.|.. .++.|.+++.||- .+=|.+-+..++..-++.
T Consensus 106 ~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi-~~ll~~~~i~l~Gk~~vVVGr--S~iVGkPla~lL~~~naT 182 (283)
T COG0190 106 KLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGI-MTLLEEYGIDLRGKNVVVVGR--SNIVGKPLALLLLNANAT 182 (283)
T ss_pred HHHHHCCCCCCCCCCCHHHHCCHHCCCCCCCCCCHHHH-HHHHHHHCCCCCCCEEEEECC--CCCCCHHHHHHHHHCCCE
T ss_conf 89860586778566696673532108998778989999-999998399878988999899--876767999999867998
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 55327753222112123433005845603686221000
Q gi|254780300|r 187 IRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 187 v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
|++|.- .+.|+.+..+.||+++..
T Consensus 183 VtvcHs--------------~T~~l~~~~k~ADIvv~A 206 (283)
T COG0190 183 VTVCHS--------------RTKDLASITKNADIVVVA 206 (283)
T ss_pred EEEECC--------------CCCCHHHHHHHCCEEEEE
T ss_conf 999757--------------788878986238999995
No 65
>KOG0068 consensus
Probab=85.06 E-value=2.3 Score=22.48 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=61.2
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
.+.|.+++.+| .+++..-....+..+|+++....|-.-. +..+..|++. -+++|++..||+|..- +.
T Consensus 143 el~GKTLgvlG---~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq~-vsl~Eil~~ADFitlH-~P------- 209 (406)
T KOG0068 143 ELRGKTLGVLG---LGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFGVQL-VSLEEILPKADFITLH-VP------- 209 (406)
T ss_pred EEECCEEEEEE---CCCCHHHHHHHHHHCCCEEEEECCCCCH-HHHHHCCCEE-EEHHHHHHHCCEEEEC-CC-------
T ss_conf 77566788850---4621189999998658548860687846-7787516545-4098877556889981-67-------
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 4445554202357588999837998599558
Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316)
Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316)
..++-+ --++++.++.+|+.+.+-.+
T Consensus 210 LtP~T~-----~lin~~tfA~mKkGVriIN~ 235 (406)
T KOG0068 210 LTPSTE-----KLLNDETFAKMKKGVRIINV 235 (406)
T ss_pred CCCCHH-----HCCCHHHHHHHHCCCEEEEE
T ss_conf 882143-----11387899986078589982
No 66
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=85.02 E-value=1.3 Score=24.18 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=68.0
Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCC---CCCCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 012221000100103554433013344664201342-05532775322211---21234330058456036862210001
Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKD---ISNMGVEVFHDMQKGLKNVDVIMILR 225 (316)
Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~---~~~~~~~~~~d~~ea~~~aDvv~~~~ 225 (316)
.+.+|++++.++..+|- +-+....+..+...|+ +++++....-.... .-+....-++++.+.+.++|+|++..
T Consensus 174 ~~~~~~l~~~~vlviGa---Gem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l~~~l~~~DvvisaT 250 (429)
T PRK00045 174 KKIFGDLSGKKVLVIGA---GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGAEAIPLEELPEALAEADIVISST 250 (429)
T ss_pred HHHCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHHCCEEEEEC
T ss_conf 98647812065999767---489999999998559984999758677899999975988974999999996589999944
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCHHHHHHC------CCCCEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 1331233344445554202357588999837------998599558998768744767976997
Q gi|254780300|r 226 MQQERIPRSLIPSIREYKHVYSLDEKKLKYA------KKDALVMHPGPINRNYEISSSVADGSQ 283 (316)
Q Consensus 226 ~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a------~~~ai~mHcLP~~Rg~Ev~~~v~d~~~ 283 (316)
-.. .+-|+.+.++.+ +|-.++==.+| |++ +++|-+-|.
T Consensus 251 ~s~----------------~~ii~~~~~~~~~~~r~~~~~~iiDLavP--Rdi--dp~v~~l~~ 294 (429)
T PRK00045 251 AAP----------------HPIITKGMVERALKQRRHRPLLLIDLAVP--RDI--EPEVGELDG 294 (429)
T ss_pred CCC----------------CCCCCHHHHHHHHHHCCCCCEEEEECCCC--CCC--CHHHCCCCC
T ss_conf 899----------------75027999999987346995699961688--777--443446698
No 67
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=84.83 E-value=1.2 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=13.6
Q ss_pred HHCCCCCCCCCCCCEEEEEEE
Q ss_conf 420487752128976999960
Q gi|254780300|r 34 KSHFNPSTTRLQGLTQINLFL 54 (316)
Q Consensus 34 ~~~~~~~~~~L~gk~~~~lF~ 54 (316)
...+....+.|+||.++.+=+
T Consensus 25 ~~ef~~~~~~LKgKkI~IiG~ 45 (489)
T PRK05225 25 RDEFADGASYLKGKKIVIVGC 45 (489)
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 887753566752885999803
No 68
>PRK12862 malic enzyme; Reviewed
Probab=84.53 E-value=3.3 Score=21.44 Aligned_cols=175 Identities=17% Similarity=0.157 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHC-----CCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHCC-CCCCCCCC
Q ss_conf 34224799987413-----6714652032100554200123421111234566312233--2222222012-22100010
Q gi|254780300|r 89 ENIADTIATLNALR-----PNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQA--LLDAFAIRHF-KGKISNLH 160 (316)
Q Consensus 89 Es~~Dta~vls~~~-----~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~--LaDl~Ti~e~-~g~l~~l~ 160 (316)
+.+-+|++.+..-+ -|+-.-+++. ..+.+-+...+| |.- | + .|=|-. +|-++-=.+. .++++.+|
T Consensus 122 ~~~i~~v~~~~ptfgginledi~ap~cf~--ie~~l~~~~~ip-v~h--d-d-qhgtaiv~~a~l~nal~~~~k~~~~~k 194 (761)
T PRK12862 122 DKLVEIIAALEPTFGGINLEDIKAPECFE--VERKLRERMKIP-VFH--D-D-QHGTAIIVAAAVLNGLKVVGKDIEDVK 194 (761)
T ss_pred HHHHHHHHHHCCCCCEECHHHCCCCCHHH--HHHHHHHHCCCC-EEC--C-C-CCHHHHHHHHHHHHHHHHHCCCHHHEE
T ss_conf 99999999858886602798868973238--999999855998-233--7-7-651899999999999998488566718
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCE---EEECCCCCCCCCCC----CCCC-----CCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 01035544330133446642013420---55327753222112----1234-----330058456036862210001133
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGAR---IRVIAPITLLPKDI----SNMG-----VEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~---v~~~~P~~~~~~~~----~~~~-----~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
|+..|- +.-.-+-..++..+|++ +.+|--++.+-+.- .... -+-...+.|++++|||..-.+..
T Consensus 195 iv~~Ga---Gaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S~~- 270 (761)
T PRK12862 195 LVASGA---GAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAA- 270 (761)
T ss_pred EEEECC---CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCC-
T ss_conf 999788---7889999999998399810179994678777887743079999996507966599996689889980689-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHC---------CCCCHHHHHHHHH
Q ss_conf 1233344445554202357588999837998599558998768744767976---------9970168687756
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVAD---------GSQSIIQYQVEMG 293 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d---------~~~s~v~~Qa~Nr 293 (316)
=-++.++++.+.++.|++-| +|..-||..+..- .-||=+=.|.-|-
T Consensus 271 -----------------~~~~~e~v~~Ma~~pivfal--ANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNNv 325 (761)
T PRK12862 271 -----------------GVLKPEMVKKMAPRPLILAL--ANPTPEILPEEARAVRPDAIIATGRSDYPNQVNNV 325 (761)
T ss_pred -----------------CCCCHHHHHHHCCCCEEEEC--CCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCHH
T ss_conf -----------------99999999852737778625--89898759999987446279834888985401111
No 69
>PRK10433 putative RNA methyltransferase; Provisional
Probab=84.47 E-value=1.2 Score=24.35 Aligned_cols=63 Identities=21% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCCC----CCC-----CCCCCCCHHHCCCCCCEEE
Q ss_conf 100103554433013344664201342-055327753222112----123-----4330058456036862210
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKDI----SNM-----GVEVFHDMQKGLKNVDVIM 222 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~----~~~-----~~~~~~d~~ea~~~aDvv~ 222 (316)
++|++|..-...|+ -|-..+++.||+ ++.++.|.....++. .++ ..+++.+++||+.++++++
T Consensus 3 i~iVLvep~~p~NI-Ga~ARaMkN~G~~~L~LV~P~~~~~~~a~~~A~gA~diL~~a~v~~sL~eAl~d~~~vv 75 (228)
T PRK10433 3 LTIILVAPARAENI-GAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNIEVFDTLAEALHDVDFTV 75 (228)
T ss_pred EEEEEECCCCCCHH-HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCEEE
T ss_conf 99999679997519-99999997289981699799999988899983473999973733377999985489899
No 70
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=83.10 E-value=1.5 Score=23.66 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC--------------CCCCCCCCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 100103554433013344664201342055327753--------------22211212343300584560368622100
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT--------------LLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~--------------~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316)
.||+.+|- ++....+...++.-|.++.+.+... |+|.......+..+.|++++++++|+|+.
T Consensus 1 kKI~IiGa---G~wGtAla~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIii 76 (159)
T pfam01210 1 KKIAVLGA---GSWGTALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVL 76 (159)
T ss_pred CEEEEECC---CHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEE
T ss_conf 98999996---99999999999987998999990436667788669782104786455530542889999837989999
No 71
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=82.83 E-value=1.7 Score=23.35 Aligned_cols=121 Identities=21% Similarity=0.335 Sum_probs=61.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCCCCCCCCCHHHCCCCCCEEEEE---EECCHHH
Q ss_conf 000100103554433013344664201342055327753222-112123433005845603686221000---1133123
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP-KDISNMGVEVFHDMQKGLKNVDVIMIL---RMQQERI 231 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~d~~ea~~~aDvv~~~---~~~~e~~ 231 (316)
|++.+|+.+| ++.=.|....-+.--|++|.+.--++--. +.....|+++ .+++||++++|+|+.+ ..|.+-+
T Consensus 2 lk~k~iaViG---YGsQG~AhAlNLrDSG~~V~vglr~~s~S~~kA~~dGf~v-~~~~eA~~~aDiim~L~PD~~q~~iy 77 (165)
T pfam07991 2 LKGKKIAVIG---YGSQGHAHALNLRDSGVNVIVGLRPGSKSWEKAKKDGFEV-YTVAEAVKKADVVMILLPDEVQAEVY 77 (165)
T ss_pred CCCCEEEEEE---ECCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCC-CCHHHHHHHCCEEEEECCCHHHHHHH
T ss_conf 6799899993---4616488872305349978999789986799999789700-48999986578999837977789999
Q ss_pred HHHHHHHHHH-----HCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCC
Q ss_conf 3344445554-----2023575889998379985995589987687447679769
Q gi|254780300|r 232 PRSLIPSIRE-----YKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADG 281 (316)
Q Consensus 232 ~~~~~~~~~~-----~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~ 281 (316)
.++..+..++ |-+.|-|.-....--+.=-++|= -|--.|-.|-.+-.+|
T Consensus 78 ~~~I~p~lk~G~~L~FaHGFnI~y~~I~pp~dvdVimV-APKgPG~~VR~~y~~G 131 (165)
T pfam07991 78 EKEIAPNLKEGAALAFAHGFNIHFGQIKPPKDVDVIMV-APKGPGHLVRREYEEG 131 (165)
T ss_pred HHHHHHHCCCCCEEEECCCCEEEECCEEECCCCCEEEE-CCCCCCHHHHHHHHCC
T ss_conf 99898657899779971575777410764699868998-8899974799986559
No 72
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=82.63 E-value=4 Score=20.95 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=116.3
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE-ECCCCHHHHHHHHHHHHHCCCCC-----CCCCCC-
Q ss_conf 78223899999999999999996442048775212897699996-07873378999979876135211-----123333-
Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLF-LETSTRTQTSFEVAGKLLGVHVI-----NINTKN- 82 (316)
Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF-~kpStRTR~SFe~A~~~LGg~~i-----~l~~~~- 82 (316)
|++-++...+|+.--.----+...+.++. ..++|+|..+++-. -+.- |-+ +--....+|..+. -|+.++
T Consensus 10 isla~~Gr~~i~wAe~~MP~L~~iR~~f~-~~kPlkG~~i~~~lH~t~k--TAv-LietL~a~GAeV~~a~cNplSTqD~ 85 (420)
T COG0499 10 ISLADEGRKEIEWAEREMPVLMAIREEFA-EEKPLKGARIAGCLHMTAK--TAV-LIETLKAGGAEVRWASCNPLSTQDD 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HCCCCCCCEEEEEEEEHHH--HHH-HHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 23335546778999865869999999875-2289776578998731587--999-9999985585699852788766678
Q ss_pred ------------CCCCCCCCCCC----HHHHHHHHCCCCEE--------EECCCCC------------------HHHHHH
Q ss_conf ------------21013334224----79998741367146--------5203210------------------055420
Q gi|254780300|r 83 ------------SAMKKGENIAD----TIATLNALRPNIIV--------IRHPYSG------------------AVNSLM 120 (316)
Q Consensus 83 ------------s~~~kgEs~~D----ta~vls~~~~d~iv--------~R~~~~~------------------~~~~~a 120 (316)
.-..|||+.+. +.++++ ..+|+++ +-|.... .+..+.
T Consensus 86 vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~-~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~am~ 164 (420)
T COG0499 86 VAAALAAKEGIPVFAWKGETLEEYYEAIDQVLD-WEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAME 164 (420)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC-CCCCEEEECCCCEEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 999987505961799707878999999999956-5998798247320210000548788774287753422899999897
Q ss_pred CC--CCCCCCCCCCCC-------CCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 01--234211112345-------663122332222222012221000100103554433013344664201342055327
Q gi|254780300|r 121 HK--IKGPSIINAGDG-------THEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIA 191 (316)
Q Consensus 121 ~~--~s~ppVINag~~-------~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~ 191 (316)
+. ... |+||--|+ +..---|.+.|-. ++-..=-+.|.+++.+| ++++-+--...+.-+|++|.+..
T Consensus 165 ~~G~L~f-Pai~VNDs~tK~~FDNrYGtgqS~~DgI-~RaTn~liaGK~vVV~G---YG~vGrG~A~~~rg~GA~ViVtE 239 (420)
T COG0499 165 KDGVLKF-PAINVNDSVTKSLFDNRYGTGQSLLDGI-LRATNVLLAGKNVVVAG---YGWVGRGIAMRLRGMGARVIVTE 239 (420)
T ss_pred HCCCCCC-CEEEECCHHHHCCCCCCCCCCHHHHHHH-HHHHCEEECCCEEEEEC---CCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 6697323-5586043444131456656412489999-86420011486699963---56443669998622898699982
Q ss_pred --CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf --753222112123433005845603686221000113312333444455542023575889998379985995589987
Q gi|254780300|r 192 --PITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPIN 269 (316)
Q Consensus 192 --P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~ 269 (316)
|..-+.....+ +++. .+++|.+.+|+++|..-.. --|+.+.|..+|+++|+-.-.-
T Consensus 240 vDPI~AleA~MdG--f~V~-~m~~Aa~~gDifiT~TGnk-----------------dVi~~eh~~~MkDgaIl~N~GH-- 297 (420)
T COG0499 240 VDPIRALEAAMDG--FRVM-TMEEAAKTGDIFVTATGNK-----------------DVIRKEHFEKMKDGAILANAGH-- 297 (420)
T ss_pred CCCHHHHHHHHCC--CEEE-EHHHHHHCCCEEEECCCCC-----------------CCCCHHHHHHCCCCEEEECCCC--
T ss_conf 4817889986357--1887-8667442189899866885-----------------7578999972648849962656--
Q ss_pred CCCCCCHHHH
Q ss_conf 6874476797
Q gi|254780300|r 270 RNYEISSSVA 279 (316)
Q Consensus 270 Rg~Ev~~~v~ 279 (316)
-+.||+-.-+
T Consensus 298 Fd~EI~~~~L 307 (420)
T COG0499 298 FDVEIDVAGL 307 (420)
T ss_pred CCEEECHHHH
T ss_conf 4000068888
No 73
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.39 E-value=2.4 Score=22.39 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=8.9
Q ss_pred HHHCCHHHHHHHHHHHHHH
Q ss_conf 2238999999999999999
Q gi|254780300|r 12 VKDLSMQDVNYLLDRANEY 30 (316)
Q Consensus 12 ~~dl~~~el~~ll~~A~~~ 30 (316)
+-|.+++.++...+...++
T Consensus 30 l~D~~~e~l~~~~~~i~~~ 48 (289)
T PRK09260 30 LVDISQEQLASAQQEIESI 48 (289)
T ss_pred EEECCHHHHHHHHHHHHHH
T ss_conf 9979989999999999999
No 74
>KOG1370 consensus
Probab=82.34 E-value=4.1 Score=20.88 Aligned_cols=246 Identities=20% Similarity=0.290 Sum_probs=121.9
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC-----C
Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211-----1
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVI-----N 77 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i-----~ 77 (316)
+|..+++ +..+|.+.||+--=.---.+...++++.+ .++|+|..++--.. -...|-+=.|+ ...||..+. .
T Consensus 7 ~y~v~~i-~~aafGRkeieiAE~eMPglma~r~r~~~-skPlkgArI~GClH-~tvqTAVLIET-Lv~LGAev~WssCNI 82 (434)
T KOG1370 7 NYKVKDI-SQAAFGRKEIEIAENEMPGLMALRKRYGP-SKPLKGARIAGCLH-MTVQTAVLIET-LVALGAEVRWSSCNI 82 (434)
T ss_pred CCEEEEC-HHHHHCHHHHHHHHHHCCHHHHHHHHHCC-CCCCCCCEEEEEEE-EEHHHHHHHHH-HHHHCCEEEEEECCC
T ss_conf 8233312-46563425655554207247788887366-78888886421254-31237899999-997476157764010
Q ss_pred CCCCC------------CCCCCCCCCCCHHHHHHH------HCCCCEE--------------------EECCCCCH----
Q ss_conf 23333------------210133342247999874------1367146--------------------52032100----
Q gi|254780300|r 78 INTKN------------SAMKKGENIADTIATLNA------LRPNIIV--------------------IRHPYSGA---- 115 (316)
Q Consensus 78 l~~~~------------s~~~kgEs~~Dta~vls~------~~~d~iv--------------------~R~~~~~~---- 115 (316)
++.++ .--.|||+.++.-.-+.. +..+.|. +|.-+.+.
T Consensus 83 fSTQdhaAAAiA~~gvpvfawkget~ee~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGV 162 (434)
T KOG1370 83 FSTQDHAAAAIAEAGVPVFAWKGETEEEYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGV 162 (434)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 02405889988753886122136650655644443214678987466558864236666551878755226233221548
Q ss_pred --HHHHHC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-C--------CCCCCEEECCCCCCCCHHHHHHHHHHC
Q ss_conf --554200--123421111234566312233222222201222-1--------000100103554433013344664201
Q gi|254780300|r 116 --VNSLMH--KIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG-K--------ISNLHIAICGDILHSRVARSDIMLLNT 182 (316)
Q Consensus 116 --~~~~a~--~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-~--------l~~l~ia~vGD~~~~~v~~S~~~~~~~ 182 (316)
+..+.+ ...+| -||--|+ ---+-.-.+|..+|..- . +-|.-.+.+| ++.|...-..++.-
T Consensus 163 H~Lykm~k~G~L~VP-AiNVNDS---VTKsKFDnLygcreSl~DgikraTDVM~aGKv~Vv~G---YGdVGKgCaqaLkg 235 (434)
T KOG1370 163 HNLYKMSKNGKLKVP-AINVNDS---VTKSKFDNLYGCRESLLDGIKRATDVMIAGKVAVVCG---YGDVGKGCAQALKG 235 (434)
T ss_pred HHHHHHHHCCCEECC-EEECCCH---HHHHHCCCCCCCHHHCHHHHHHHHHHEECCCEEEEEC---CCCCCHHHHHHHHC
T ss_conf 999999767913054-5522531---3333223210221100036655445145251799963---57645668999750
Q ss_pred CCCEEEECC--CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC
Q ss_conf 342055327--753222112123433005845603686221000113312333444455542023575889998379985
Q gi|254780300|r 183 MGARIRVIA--PITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDA 260 (316)
Q Consensus 183 ~g~~v~~~~--P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~a 260 (316)
+|..|.+.. |..-+-.... |++++ .++|+++.+|+++|+.-.. =-|+.+.|+.+++++
T Consensus 236 ~ga~VivTEiDPI~ALQAaMe--G~~V~-tm~ea~~e~difVTtTGc~-----------------dii~~~H~~~mk~d~ 295 (434)
T KOG1370 236 FGARVIVTEIDPICALQAAME--GYEVT-TLEEAIREVDIFVTTTGCK-----------------DIITGEHFDQMKNDA 295 (434)
T ss_pred CCCEEEEECCCCHHHHHHHHH--CCEEE-EHHHHHHCCCEEEECCCCC-----------------CHHHHHHHHHCCCCC
T ss_conf 686899960580689998752--53754-6887641277899756873-----------------123399997476773
Q ss_pred EEECCCCCCCCCCCCHHHHCC
Q ss_conf 995589987687447679769
Q gi|254780300|r 261 LVMHPGPINRNYEISSSVADG 281 (316)
Q Consensus 261 i~mHcLP~~Rg~Ev~~~v~d~ 281 (316)
|+-.-.- -..||+-.-+..
T Consensus 296 IvCN~Gh--fd~EiDv~~L~~ 314 (434)
T KOG1370 296 IVCNIGH--FDTEIDVKWLNT 314 (434)
T ss_pred EEECCCC--CCCEEEHHHHCC
T ss_conf 7852565--430110433047
No 75
>TIGR01723 hmd_TIGR coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase; InterPro: IPR010062 The N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase system of methanogenic archaea is composed of H2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd, IPR004889 from INTERPRO) and F420-dependent methylenetetrahydromethanopterin dehydrogenase (IPR002844 from INTERPRO) , . Hmd is an iron-sulphur-cluster-free enzyme that contains an intrinsic CO ligand bound to iron . The Hmd enzymes can be divide into two distinct subgroups: one has been experimentally characterised as H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase (Hmd or HmdI), and the other one contains isozymes that have not been experimentally characterised (HmdII and HmdIII). Because all three isozyme forms are present in each of the corresponding sequenced genomes, it has been suggested that HmdII and HmdIII may not exhibit Hmd activity and may have a different biological function . This entry represents the experimentally characterised (HmdI) subgroup of the N(5),N(10)-methylenetetrahydromethanopterin dehydrogenases.; GO: 0047068 N5N10-methenyltetrahydromethanopterin hydrogenase activity, 0019386 methanogenesis from carbon dioxide.
Probab=82.29 E-value=1.5 Score=23.64 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE-EEECCHHHHHHHHHHHHH
Q ss_conf 355443301334466420134-205532775322211212343300584560368622100-011331233344445554
Q gi|254780300|r 164 CGDILHSRVARSDIMLLNTMG-ARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI-LRMQQERIPRSLIPSIRE 241 (316)
Q Consensus 164 vGD~~~~~v~~S~~~~~~~~g-~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~-~~~~~e~~~~~~~~~~~~ 241 (316)
++.++ .+++....=+.+-+ ..+++++|++.. .+.+++++.|=.||+.+||+|++ ..=+..+ .
T Consensus 102 MP~iR--e~V~~~A~elPKPP~gaIH~~~PEe~e----d~l~~~vTtDD~EAV~dAD~ii~WlPKG~~Q--P-------- 165 (359)
T TIGR01723 102 MPKIR--EVVNEVAKELPKPPKGAIHFVHPEEME----DDLGLKVTTDDREAVEDADIIITWLPKGDVQ--P-------- 165 (359)
T ss_pred CHHHH--HHHHHHHHHCCCCCCCCEECCCCCCCC----CCCCEEEECCHHHHHCCCCEEEEECCCCCCC--H--------
T ss_conf 42668--999999850776854206125730221----4356056147088750797799835888886--2--------
Q ss_pred HCCCCCCCHHHHHHCCCCCEEECCC
Q ss_conf 2023575889998379985995589
Q gi|254780300|r 242 YKHVYSLDEKKLKYAKKDALVMHPG 266 (316)
Q Consensus 242 ~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316)
.|=.++.+--++.+||-|.-
T Consensus 166 -----dI~~K~~D~I~eGaIV~~aC 185 (359)
T TIGR01723 166 -----DIIKKFIDDIPEGAIVTHAC 185 (359)
T ss_pred -----HHHHHHHHCCCCCCEECCCC
T ss_conf -----68998874179984670567
No 76
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=81.99 E-value=1.9 Score=23.08 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=32.3
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 0010355443301334466420134205532775322211212343300584560368622100
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316)
+|.|+|= +++-.....-+..-|+++.+.-...-..+.....++....++.++++++|+|++
T Consensus 3 ~Ig~IGl---G~MG~~ma~~L~~~g~~v~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvIi~ 63 (163)
T pfam03446 3 KIGFIGL---GVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVAAASPAEAAASADVVIT 63 (163)
T ss_pred EEEEEEE---HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEECCCHHHHHHCCCEEEE
T ss_conf 8999836---798999999999779969999797887799998399553999999861999999
No 77
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1; InterPro: IPR004384 These proteins are part of the trmH (spoU) family of rRNA methylases. The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases . TrmH is a tRNA (guanosine-2'-O-)-methyltransferase (2.1.1.34 from EC), which specifically methylates guanosine-18 in various tRNAs using S-adenosyl-L-methionine.; GO: 0008173 RNA methyltransferase activity.
Probab=80.57 E-value=1.3 Score=24.00 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=60.4
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCC-CCCCCC----CC-----CCCCCCCCHHHCCC--CCCEEE
Q ss_conf 000100103554433013344664201342-055327753-222112----12-----34330058456036--862210
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPIT-LLPKDI----SN-----MGVEVFHDMQKGLK--NVDVIM 222 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~-~~~~~~----~~-----~~~~~~~d~~ea~~--~aDvv~ 222 (316)
+.+++|.+|=.-..+| .-|...+.+.||+ ++.++.|.. +..+.. .+ .+..+++|++|++. +.|.|+
T Consensus 2 ~~~I~ivLVep~~~gN-vG~~ARaMKnmGl~~L~Lv~p~~~~~~~eay~~A~~A~Di~~nA~vv~~L~Eal~sld~~~~v 80 (253)
T TIGR00050 2 LENISIVLVEPKHSGN-VGSIARAMKNMGLEELILVNPRVDILEEEAYALAAHAKDILENAKVVDDLDEALDSLDCDLVV 80 (253)
T ss_pred CCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCEEE
T ss_conf 5124788861799864-469999987627001256466225568789998720278658754742679998731997078
Q ss_pred EEE-EC--CHHHHHHHHHHHHHHCCCCCCCHHHHHHCC--CCCEE
Q ss_conf 001-13--312333444455542023575889998379--98599
Q gi|254780300|r 223 ILR-MQ--QERIPRSLIPSIREYKHVYSLDEKKLKYAK--KDALV 262 (316)
Q Consensus 223 ~~~-~~--~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~--~~ai~ 262 (316)
-++ .- ++|.-. ..+..|-++-+.+.+... +-|++
T Consensus 81 gTsGaRGGd~r~l~------~~~~~P~el~~~~~~~~g~~~~A~v 119 (253)
T TIGR00050 81 GTSGARGGDSRNLQ------RPLLTPRELADKILAKKGWMKVAIV 119 (253)
T ss_pred ECCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 62678887543446------7777836668764242067214788
No 78
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=80.38 E-value=1.2 Score=24.22 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC----CCCCCCHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 52128976999960787337899997987613521-112333321013----3342247999874136714652032100
Q gi|254780300|r 41 TTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHV-ININTKNSAMKK----GENIADTIATLNALRPNIIVIRHPYSGA 115 (316)
Q Consensus 41 ~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~-i~l~~~~s~~~k----gEs~~Dta~vls~~~~d~iv~R~~~~~~ 115 (316)
..+|++|+++.+=+-+--|- -..-...-|-.+ +-+.+. +++.+ |=.+.+.+... .. +|+|++-.|+...
T Consensus 11 l~~lk~k~iaVIGYGsQG~A---hAlNLrDSG~~V~vglr~g-~s~~~A~~~Gf~v~~~~eA~-~~-aDvi~~L~pD~~q 84 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRPG-KSFEVAKADGFEVMSVSEAV-RT-AQVVQMLLPDEQQ 84 (335)
T ss_pred HHHHCCCEEEEEEECCHHHH---HHHHHHHCCCCEEEEECCC-CCHHHHHHCCCEECCHHHHH-HH-CCEEEEECCHHHH
T ss_conf 58887997999756707689---8856476399779997998-56999998799316799999-85-7978750885879
No 79
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=79.89 E-value=3.1 Score=21.61 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=58.7
Q ss_pred HHHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 2222201222-100010010355443301334466420134205532775322211212343300584560368622100
Q gi|254780300|r 145 DAFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316)
Q Consensus 145 Dl~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316)
-++.+.++.+ +++|.+++.+|. ..-|-.-+..++..-|+.+++|.-. +.++++.+++||+|+.
T Consensus 14 av~~ll~~y~i~l~Gk~vvVvGr--S~~VG~Pla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIvI~ 77 (140)
T cd05212 14 AVKELLNKEGVRLDGKKVLVVGR--SGIVGAPLQCLLQRDGATVYSCDWK--------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred HHHHHHHHHCCCCCCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHHHCCEEEE
T ss_conf 99999998099999999999999--8124999999999788989994699--------------9598998523499998
Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 01133123334444555420235758899983799859955899
Q gi|254780300|r 224 LRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGP 267 (316)
Q Consensus 224 ~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP 267 (316)
..-.. .-|+.+++ ++++++.-+..
T Consensus 78 a~G~p-----------------~~i~~~~v---k~GavvIDvGi 101 (140)
T cd05212 78 GSPKP-----------------EKVPTEWI---KPGATVINCSP 101 (140)
T ss_pred CCCCC-----------------CCCCHHHC---CCCCEEEEECC
T ss_conf 16876-----------------72789776---79988998037
No 80
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=78.68 E-value=2.3 Score=22.45 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=64.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHH---CCCCE----EEECC-CCCCCC-C-------C--C-CCCCCCCCCCHHHCCCC
Q ss_conf 0010010355443301334466420---13420----55327-753222-1-------1--2-12343300584560368
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLN---TMGAR----IRVIA-PITLLP-K-------D--I-SNMGVEVFHDMQKGLKN 217 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~---~~g~~----v~~~~-P~~~~~-~-------~--~-~~~~~~~~~d~~ea~~~ 217 (316)
+.++|+..|=. +-++.||+...+ .||.+ +++.- |...-. + | . .-.++..|+|+++|++|
T Consensus 2 ~p~rV~VTGAA--GQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCAFPlL~~v~~T~~p~eAF~d 79 (329)
T TIGR01759 2 KPVRVAVTGAA--GQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCAFPLLAGVVATTDPEEAFKD 79 (329)
T ss_pred CCEEEEEECCH--HHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCC
T ss_conf 95379973744--6789999889855610488984688860772331133443553530645223511221686875189
Q ss_pred CCEEEEEEECCH-HHHH-HHHHHHHHHCCCCCCCHHHHH-HCCCCCEEECCC-CCCCC
Q ss_conf 622100011331-2333-444455542023575889998-379985995589-98768
Q gi|254780300|r 218 VDVIMILRMQQE-RIPR-SLIPSIREYKHVYSLDEKKLK-YAKKDALVMHPG-PINRN 271 (316)
Q Consensus 218 aDvv~~~~~~~e-~~~~-~~~~~~~~~~~~~~v~~~~l~-~a~~~ai~mHcL-P~~Rg 271 (316)
+|+-... +.+ |-++ +|.+-..+=.+-|+..-+.|+ .|||+++++=-+ |+|=+
T Consensus 80 vD~AlLv--Ga~PRK~GMER~DLL~~Ng~IF~~QG~aLn~~Ak~~vKVLVVGNPaNTN 135 (329)
T TIGR01759 80 VDVALLV--GAFPRKPGMERRDLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTN 135 (329)
T ss_pred CCEEEEE--CCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 8757761--3668958844799987222546879999998618985699852986279
No 81
>pfam05222 AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=77.53 E-value=3.7 Score=21.11 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHCCCCEEEECCCC----CCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHH--HHHHHHCCCCCCCHHH
Q ss_conf 420134205532775----3222112123433005845603686221000113312333444--4555420235758899
Q gi|254780300|r 179 LLNTMGARIRVIAPI----TLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLI--PSIREYKHVYSLDEKK 252 (316)
Q Consensus 179 ~~~~~g~~v~~~~P~----~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~--~~~~~~~~~~~v~~~~ 252 (316)
-+..+|++|.+-.-. ++-.++....|.++..+.++.++++|+|...+-..+..-.... .-.--+.++|+ +.++
T Consensus 22 kl~~~G~~V~iE~gaG~~s~f~D~~Y~~aGa~i~~~~~e~~~~adiIl~v~~p~~~e~~~lk~~~~li~~l~p~~-n~~~ 100 (135)
T pfam05222 22 KLVKLGHEVLVESGAGLGAGFSDEAYEAAGAEIVDSAAEVWAQADLILKVKEPSPEELALLRPGQTLITFLHPAA-NPEL 100 (135)
T ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCEECCCHHHHHHCCEEEEECCCCHHHHHHCCCCCEEEEECCCCC-CHHH
T ss_conf 999789989997498851772679998646621101102333244688757999999985369989999737345-9999
Q ss_pred HHHC---CCCCEEECCCCCCCCC
Q ss_conf 9837---9985995589987687
Q gi|254780300|r 253 LKYA---KKDALVMHPGPINRNY 272 (316)
Q Consensus 253 l~~a---~~~ai~mHcLP~~Rg~ 272 (316)
++.. +-.++=|.++|+.|+.
T Consensus 101 ~~~l~~~~it~~s~E~ipr~raQ 123 (135)
T pfam05222 101 LEALAAKGVTAIAYETVPRIRAQ 123 (135)
T ss_pred HHHHHHCCCEEEEEECCCCCCCC
T ss_conf 99999869959981246147776
No 82
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.14 E-value=5 Score=20.27 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 33013344664201342055327
Q gi|254780300|r 169 HSRVARSDIMLLNTMGARIRVIA 191 (316)
Q Consensus 169 ~~~v~~S~~~~~~~~g~~v~~~~ 191 (316)
...+.......+..+|....++.
T Consensus 156 s~~~~~~~~~~~~~~gk~pvvv~ 178 (310)
T PRK06130 156 SPQTVATVMAMLRSIGKRPVLVK 178 (310)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 89999999999997198799988
No 83
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=77.13 E-value=4.9 Score=20.33 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=51.6
Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCC----C----CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-----
Q ss_conf 33422479998741367146520321005542001----2----3421111234566312233222222201222-----
Q gi|254780300|r 88 GENIADTIATLNALRPNIIVIRHPYSGAVNSLMHK----I----KGPSIINAGDGTHEHPSQALLDAFAIRHFKG----- 154 (316)
Q Consensus 88 gEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~----~----s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g----- 154 (316)
|=....+.+-... .+|+++.--++...+.+..-. . ..-.||++ +.. +|..+--=.-.+.+...
T Consensus 44 Ga~~a~s~~eaa~-~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDm--STi-sp~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 44 GATVAASPAEAAA-EADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDM--STI-SPETARELAAALAAKGLEFLDA 119 (286)
T ss_pred CCEECCCHHHHHH-HCCEEEEECCCHHHHHHHHHCCCCHHHCCCCCCEEEEC--CCC-CHHHHHHHHHHHHHCCCCEEEC
T ss_conf 9800388999996-19989996179899999981853353337899789987--899-9899999999999669868946
Q ss_pred CC--------CC-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 10--------00-1001035544330133446642013420553277532
Q gi|254780300|r 155 KI--------SN-LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316)
Q Consensus 155 ~l--------~~-l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316)
++ .| |+|..=|| -....-..-.+..+|-+++.++|.+.
T Consensus 120 PVsGg~~~A~~GtLtimvGG~---~~~f~r~~pvl~~~g~~i~~~G~~G~ 166 (286)
T COG2084 120 PVSGGVPGAAAGTLTIMVGGD---AEAFERAKPVLEAMGKNIVHVGPVGA 166 (286)
T ss_pred CCCCCCHHHHHCCEEEEECCC---HHHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf 765883123207169994799---99999889999986075698789870
No 84
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=76.84 E-value=2.3 Score=22.46 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=21.5
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 205532775322211212343300584560368622100
Q gi|254780300|r 185 ARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316)
Q Consensus 185 ~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316)
..++++.|+. .|+.++.|-.||+++||+|++
T Consensus 117 g~IHfvhPE~--------lglkvt~dD~eAV~dAD~iit 147 (345)
T PRK00961 117 GCIHFVHPET--------LGLKVTTDDREAVKDADIVIT 147 (345)
T ss_pred CEEEECCHHH--------CCCEEECCCHHHHCCCCEEEE
T ss_conf 4035458888--------581553370767447777999
No 85
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=76.57 E-value=3.7 Score=21.11 Aligned_cols=80 Identities=18% Similarity=0.273 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 11123456631223322222220122210001001035544330133446642013420553277532221121234330
Q gi|254780300|r 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEV 207 (316)
Q Consensus 128 VINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~ 207 (316)
+|-||+ ..-|-..+.|+.... .+.+-.++++- +-..|...+.. ++.++ ..+......++.
T Consensus 4 iIGaGS--~~~~~~~~~d~~~~~----~l~~~ei~L~D-Id~~rL~~~~~-l~~~~------------~~~~~~~~~v~~ 63 (183)
T pfam02056 4 IIGGGS--TITPKNLLGDLDHTE----ELPGRELALYD-IDEERLDAIQT-ACKKL------------VDEAGPDIKFEK 63 (183)
T ss_pred EECCCH--HHHHHHHHHHHHCCC----CCCCCEEEEEC-CCHHHHHHHHH-HHHHH------------HHHCCCCEEEEE
T ss_conf 999854--443999999996085----68989999977-99999999999-99999------------996199839999
Q ss_pred CCCHHHCCCCCCEEE-EEEEC
Q ss_conf 058456036862210-00113
Q gi|254780300|r 208 FHDMQKGLKNVDVIM-ILRMQ 227 (316)
Q Consensus 208 ~~d~~ea~~~aDvv~-~~~~~ 227 (316)
+.|.++|+++||+|+ +.+.+
T Consensus 64 ttd~~eAl~gADfVi~~irvG 84 (183)
T pfam02056 64 TTDRKEALTDADFVINAIRVG 84 (183)
T ss_pred ECCHHHHHCCCCEEEEEEEEC
T ss_conf 789999966899999986407
No 86
>PRK08655 prephenate dehydrogenase; Provisional
Probab=76.08 E-value=2.9 Score=21.78 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCCEEEECCCCCHH---HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH-------HHHCCCC----CCCCCCEEECCCCC
Q ss_conf 67146520321005---5420012342111123456631223322222-------2201222----10001001035544
Q gi|254780300|r 103 PNIIVIRHPYSGAV---NSLMHKIKGPSIINAGDGTHEHPSQALLDAF-------AIRHFKG----KISNLHIAICGDIL 168 (316)
Q Consensus 103 ~d~iv~R~~~~~~~---~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~-------Ti~e~~g----~l~~l~ia~vGD~~ 168 (316)
+|++++-.|-+... .+++.+.+.-.+.-=..+-.+-|+++|.... -+.--|| ++.|..|++|+--.
T Consensus 59 advVIvsVPI~~T~~VI~~laP~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP~v~sl~gQvVVvcP~~~ 138 (441)
T PRK08655 59 GDIVIVSVPINVTEDVIREVAPHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGPRTPSLRGQVVILTPTEK 138 (441)
T ss_pred CCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999984889999999997424899969998310417799999975657887745488879998665788899963898
Q ss_pred CCCHHHHHH-HHHHCCCCEEEECCCCCC
Q ss_conf 330133446-642013420553277532
Q gi|254780300|r 169 HSRVARSDI-MLLNTMGARIRVIAPITL 195 (316)
Q Consensus 169 ~~~v~~S~~-~~~~~~g~~v~~~~P~~~ 195 (316)
.++-..+|+ ..+..-|+.++.++|++.
T Consensus 139 ~~~~~~~~l~~~l~~~Ga~v~~~tpeEH 166 (441)
T PRK08655 139 RSNPWFPKVRNFLEEEGARVIITTPEEH 166 (441)
T ss_pred CCCHHHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 7717799999999977988999488998
No 87
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=74.81 E-value=2.3 Score=22.49 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 013344664201342055327753
Q gi|254780300|r 171 RVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 171 ~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
.+.....-.+..+|-++..++|.+
T Consensus 142 ~~~~~~~piL~~~~~~i~~~G~~G 165 (295)
T PRK11559 142 AIFDKYYDLMKAMAGSVVHTGEIG 165 (295)
T ss_pred HHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 999999999942655603428945
No 88
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=74.80 E-value=2.1 Score=22.68 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=41.6
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC-C-CCCCCCCCCCC-CCCCHHHCCCCCCEEEEE
Q ss_conf 00103554433013344664201342055327753-2-22112123433-005845603686221000
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT-L-LPKDISNMGVE-VFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~-~-~~~~~~~~~~~-~~~d~~ea~~~aDvv~~~ 224 (316)
||+++| .+|+..+++..+..-|.++.+++... - ..+.....++. .+.+..++++++|+|+..
T Consensus 1 KIg~IG---~G~mg~ai~~~l~~~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIila 65 (93)
T pfam03807 1 KIGIIG---AGNMGEALARGLAAAGHEVIIANSRNPEKAAALAEELGVGATAVSNEEAAEEADVVILA 65 (93)
T ss_pred CEEEEC---CHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEE
T ss_conf 989997---00999999999997799612786487899999999819976458999997449989999
No 89
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=74.69 E-value=5.1 Score=20.20 Aligned_cols=136 Identities=12% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCC---CCCC---CCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7822389999999999999999644204---8775---21289769999-607873378999979876135211123333
Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHF---NPST---TRLQGLTQINL-FLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316)
Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~---~~~~---~~L~gk~~~~l-F~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316)
|.+-|.+++-++.+-.+|+.+.+..... ...+ ..|+|...+.. |.--....|..=+.-..+.|. ++.++
T Consensus 32 i~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~IplkyGv----~gqeT 107 (425)
T cd05197 32 VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV----IGQET 107 (425)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCC----EEECC
T ss_conf 99988999999999999999999619983899978999985689999998875670578999868987591----44437
Q ss_pred CCCC---CC----CCCCCHHHHHHHHCCCCEEEECCCCCH-HHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2101---33----342247999874136714652032100-55420-012342111123456631223322222220
Q gi|254780300|r 83 SAMK---KG----ENIADTIATLNALRPNIIVIRHPYSGA-VNSLM-HKIKGPSIINAGDGTHEHPSQALLDAFAIR 150 (316)
Q Consensus 83 s~~~---kg----Es~~Dta~vls~~~~d~iv~R~~~~~~-~~~~a-~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~ 150 (316)
.+.+ ++ -.+.|.++.+..+.+|++++=...... +.+.. ++.....+|..|++.. +-.+.||+++=+.
T Consensus 108 ~G~GG~~~alRtIPv~l~ia~~i~e~cP~AwliNytNP~~ivt~al~~~~~~~k~vGLCh~~~-~~~~~la~~lg~~ 183 (425)
T cd05197 108 VGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYVPPEKAVGLCNVPI-GVMEIVAKLLGES 183 (425)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHHHHCCC
T ss_conf 778899999842999999999999869980899737878999999997488884898586679-9999999994998
No 90
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=74.41 E-value=6.2 Score=19.68 Aligned_cols=145 Identities=8% Similarity=0.044 Sum_probs=81.2
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHC---CCCCC---CCCCCCEEEE-EEECCCCHHHHHHHHHHHHHCCCC-
Q ss_conf 777741782238999999999999999964420---48775---2128976999-960787337899997987613521-
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSH---FNPST---TRLQGLTQIN-LFLETSTRTQTSFEVAGKLLGVHV- 75 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~---~~~~~---~~L~gk~~~~-lF~kpStRTR~SFe~A~~~LGg~~- 75 (316)
++... |.+-|.+.+-++.+-.+|+.+.+.... ....+ ..|+|...+. -|.--...-|..=|.=..+.|-.-
T Consensus 27 l~~~e-i~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~~irvGg~~~r~~De~Iplk~Gv~~~ 105 (423)
T cd05297 27 LSGST-IALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQT 105 (423)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 78998-99988999999999999999998519981899968999984689999998774682488988848988396604
Q ss_pred C--CCCCCCCCCCCC--CCCCCHHHHHHHHCCCCEEEECCCCC-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1--123333210133--34224799987413671465203210-055420012342111123456631223322222220
Q gi|254780300|r 76 I--NINTKNSAMKKG--ENIADTIATLNALRPNIIVIRHPYSG-AVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIR 150 (316)
Q Consensus 76 i--~l~~~~s~~~kg--Es~~Dta~vls~~~~d~iv~R~~~~~-~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~ 150 (316)
+ ..++.....+-+ -.+.|.++.+..|.+|++++=..... .+.+.....+...+|+.|+++. +....+|+++-..
T Consensus 106 vGET~G~GG~~~alRtIPv~leia~~i~e~~P~AwiiNytNP~~ivteal~r~~~~k~iGlC~~p~-~~~~~la~~l~~~ 184 (423)
T cd05297 106 VGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTPIKTVGLCHGVQ-GTAEQLAKLLGEP 184 (423)
T ss_pred ECCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCHH-HHHHHHHHHHCCC
T ss_conf 456547758999862289999999999987998389976788899999999738997898797769-9999999982998
No 91
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=73.87 E-value=2.4 Score=22.39 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCC----CCCCCCHHHHHHHHCCCCEEEECCCCCH
Q ss_conf 52128976999960787337899997987613521-112333321013----3342247999874136714652032100
Q gi|254780300|r 41 TTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHV-ININTKNSAMKK----GENIADTIATLNALRPNIIVIRHPYSGA 115 (316)
Q Consensus 41 ~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~-i~l~~~~s~~~k----gEs~~Dta~vls~~~~d~iv~R~~~~~~ 115 (316)
.+.|++|+++.+=+-.--|- -..-...-|-++ +-+.+.+.++.| |-.+.+..... .. +|+|++-.|+...
T Consensus 12 l~~lk~k~iaViGYGsQG~A---hAlNLrDSG~~V~vglr~gs~S~~kA~~dGf~v~~~~eA~-~~-aDii~~L~PD~~q 86 (336)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHA---HALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAA-KW-ADVIMILLPDELQ 86 (336)
T ss_pred HHHHCCCEEEEECCCCHHHH---HHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEECCHHHHH-HH-CCEEEEECCHHHH
T ss_conf 47877997999752707689---8855374499779997999803999998799436799999-74-6866542875778
Q ss_pred H
Q ss_conf 5
Q gi|254780300|r 116 V 116 (316)
Q Consensus 116 ~ 116 (316)
.
T Consensus 87 ~ 87 (336)
T PRK05479 87 A 87 (336)
T ss_pred H
T ss_conf 9
No 92
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=73.78 E-value=5.5 Score=20.00 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCC-CCEEEECCCCCC-CCCCCCCCCCCCCCCHHHCCCCCCEEE
Q ss_conf 2210001001035--------544330133446642013-420553277532-221121234330058456036862210
Q gi|254780300|r 153 KGKISNLHIAICG--------DILHSRVARSDIMLLNTM-GARIRVIAPITL-LPKDISNMGVEVFHDMQKGLKNVDVIM 222 (316)
Q Consensus 153 ~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~-g~~v~~~~P~~~-~~~~~~~~~~~~~~d~~ea~~~aDvv~ 222 (316)
.+.+.+.+|+..| |+++| -+-.++..+... ++++...-|.-- .+. ...+.....+++++++++|+|+
T Consensus 315 ~~~~~~~~I~iLGlafK~~tdD~R~S-ps~~ii~~L~~~~~a~v~~~DP~v~~~~~--~~~~~~~~~~~~~~~~~aD~vi 391 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRES-PAMEIAQLIAQWHSGETLVVEPNIHQLPK--KLDGLVTLASLDEALATADVLV 391 (415)
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCC-CHHHHHHHHHHCCCCEEEEECCCCCHHHH--HHCCCCEECCHHHHHHCCCEEE
T ss_conf 46766877999976666999741358-59999999997389839998998873357--6338713367999982799999
Q ss_pred -EEEEC
Q ss_conf -00113
Q gi|254780300|r 223 -ILRMQ 227 (316)
Q Consensus 223 -~~~~~ 227 (316)
.+.|.
T Consensus 392 i~T~h~ 397 (415)
T PRK11064 392 MLVDHS 397 (415)
T ss_pred EECCCH
T ss_conf 924986
No 93
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.44 E-value=3.5 Score=21.29 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=44.4
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCC-CH-HHCCCCCCEEEEE
Q ss_conf 2210001001035544330133446642013420553277532--22112123433005-84-5603686221000
Q gi|254780300|r 153 KGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFH-DM-QKGLKNVDVIMIL 224 (316)
Q Consensus 153 ~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~-d~-~ea~~~aDvv~~~ 224 (316)
|=+++|.++..+| ++.|+..-+..+...|+++++++|+-. +.+......++... +. .+-+.++++|+..
T Consensus 5 fl~l~gk~vLVVG---GG~vA~rK~~~Ll~~gA~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaA 77 (202)
T PRK06718 5 MIDLSNKRVVIVG---GGKVAGRRAITLLKYGAHITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred EEECCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEC
T ss_conf 9982898699988---989999999999868996999869999899999976994476167886675167044552
No 94
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.72 E-value=3.2 Score=21.53 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=6.1
Q ss_pred CCCCCCHHHCCCCCCEE
Q ss_conf 33005845603686221
Q gi|254780300|r 205 VEVFHDMQKGLKNVDVI 221 (316)
Q Consensus 205 ~~~~~d~~ea~~~aDvv 221 (316)
+....|..+.++++|+|
T Consensus 54 i~~~~~~~~~~~~~d~I 70 (245)
T PRK07634 54 VSTTTDWKQHVTSVDTI 70 (245)
T ss_pred CEECCCHHHHHHHCCEE
T ss_conf 74227779998559999
No 95
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.08 E-value=8.1 Score=18.91 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=9.8
Q ss_pred HHHCCHHHHHHHHHHHHHH
Q ss_conf 2238999999999999999
Q gi|254780300|r 12 VKDLSMQDVNYLLDRANEY 30 (316)
Q Consensus 12 ~~dl~~~el~~ll~~A~~~ 30 (316)
+-|.+++.+..-.+...+.
T Consensus 31 l~D~~~~~l~~~~~~i~~~ 49 (282)
T PRK05808 31 MVDISDEAVDRGLATITKS 49 (282)
T ss_pred EEECCHHHHHHHHHHHHHH
T ss_conf 9979989999999999999
No 96
>KOG0409 consensus
Probab=70.87 E-value=3.2 Score=21.53 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=18.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf 1333422479998741367146520321005542
Q gi|254780300|r 86 KKGENIADTIATLNALRPNIIVIRHPYSGAVNSL 119 (316)
Q Consensus 86 ~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~ 119 (316)
.+|.++.++-.-+... +|+++.-.++...+.++
T Consensus 76 ~~Ga~v~~sPaeVae~-sDvvitmv~~~~~v~~v 108 (327)
T KOG0409 76 EAGARVANSPAEVAED-SDVVITMVPNPKDVKDV 108 (327)
T ss_pred HHCHHHHCCHHHHHHH-CCEEEEECCCHHHHHHH
T ss_conf 7050140797999863-68899976880766888
No 97
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=70.42 E-value=8 Score=18.97 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=65.8
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC----C--------CC------------CCCCCCCCCHHHCC
Q ss_conf 001035544330133446642013420553277532221----1--------21------------23433005845603
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPK----D--------IS------------NMGVEVFHDMQKGL 215 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~----~--------~~------------~~~~~~~~d~~ea~ 215 (316)
+|+.+|- +.+..++...++.-|++|++..|..-..+ . .. -..+..+.|++++
T Consensus 1 kV~ViGa---G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~- 76 (180)
T pfam02737 1 KVAVIGA---GTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADA- 76 (180)
T ss_pred CEEEECC---CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH-
T ss_conf 9899997---889999999999679939999799899999999999989999972567567699998524105889997-
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHCCC--------CCCCHHHHH-HC--CCCCEEECCC-CCC--CCCCCC
Q ss_conf 686221000113312333444455542023--------575889998-37--9985995589-987--687447
Q gi|254780300|r 216 KNVDVIMILRMQQERIPRSLIPSIREYKHV--------YSLDEKKLK-YA--KKDALVMHPG-PIN--RNYEIS 275 (316)
Q Consensus 216 ~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~--------~~v~~~~l~-~a--~~~ai~mHcL-P~~--Rg~Ev~ 275 (316)
.++|+|.-..-.....+.+.....+++..+ -.+.-..|. .+ +...+.||+. |.+ +-+||-
T Consensus 77 ~~adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is~la~~~~~p~R~ig~HffnP~~~~pLVEIv 150 (180)
T pfam02737 77 VDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIGLHFFNPPPLMPLVEVV 150 (180)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEC
T ss_conf 58999999251768899999999997430330887526768999999747987669997568877768538883
No 98
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=70.25 E-value=6.9 Score=19.37 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=59.4
Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCC----CCCCCCCCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 012221000100103554433013344664201342-0553277532----22112123433005845603686221000
Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITL----LPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~----~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
.+.+|++++.++..||- +-+....+.-+...|. +++++.-..- +.+...+.......++.+.+..+|+|++.
T Consensus 173 ~~~~~~l~~~~vlvvGa---Gem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~~l~~~l~~aDivisa 249 (414)
T PRK13940 173 KRQLDNISSKNVLIIGA---GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAA 249 (414)
T ss_pred HHHCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEE
T ss_conf 98628712283899668---647899999999769987999457567799999970888501699999998638879981
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 113312333444455542023575889998379985995589987687
Q gi|254780300|r 225 RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNY 272 (316)
Q Consensus 225 ~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~ 272 (316)
.-.. .+-++.+.++. +|-.++==.+| |++
T Consensus 250 T~a~----------------~~ii~~~~~~~-~p~~~iDLavP--Rdi 278 (414)
T PRK13940 250 VNVL----------------EYIVTCKYVGD-KPRVFIDISIP--QAL 278 (414)
T ss_pred CCCC----------------HHHCCHHHHCC-CCEEEEEECCC--CCC
T ss_conf 6982----------------44404866457-97589984588--888
No 99
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=70.18 E-value=4.1 Score=20.87 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 23421111234566312233222222201222100010010355443301334466420134205532775
Q gi|254780300|r 123 IKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPI 193 (316)
Q Consensus 123 ~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~ 193 (316)
...|| |...+...-+.+..+.|...+++....-++.+++.+|- +.+.--....++.+|.+++++...
T Consensus 115 p~~p~-i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGg---G~ig~E~A~~l~~~G~~Vtiv~~~ 181 (443)
T PRK09564 115 PIIPP-IKNINLENVYTLRSMEDGLALKKLLKKKEIKRIVIIGA---GFIGLEVVEAAKKLGKNVRIIQLE 181 (443)
T ss_pred CCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 23699-88756666567657899999999765127965999997---099999999998669889999957
No 100
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=69.58 E-value=8.9 Score=18.65 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=4.5
Q ss_pred CHHHHHHHHCCCCE
Q ss_conf 47999874136714
Q gi|254780300|r 93 DTIATLNALRPNII 106 (316)
Q Consensus 93 Dta~vls~~~~d~i 106 (316)
|.+.-+..|..|++
T Consensus 101 ~i~~~i~~~~p~a~ 114 (263)
T cd00650 101 EIGDNIEKYSPDAW 114 (263)
T ss_pred HHHHHHHHCCCCCE
T ss_conf 99888873299836
No 101
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=69.32 E-value=9 Score=18.62 Aligned_cols=64 Identities=23% Similarity=0.236 Sum_probs=36.3
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCC--EEEECCC-CCC-CC--CCCC------CCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 100103554433013344664201342--0553277-532-22--1121------23433005845603686221000
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGA--RIRVIAP-ITL-LP--KDIS------NMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~--~v~~~~P-~~~-~~--~~~~------~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
.||+.+|- .++|..+....+...|. ++.++-- ++. .- .|.. .....+..+..+.++++|+|+.+
T Consensus 1 mKV~IIGa--gg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVit 76 (142)
T pfam00056 1 VKVAVVGA--GGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVIT 76 (142)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEE
T ss_conf 98999898--77899999999974796634788505776411799998614434788769748838883789999981
No 102
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=68.93 E-value=9.2 Score=18.56 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=58.8
Q ss_pred CCCEEEECCCCCHHHH--HHCCCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHCCC----CCCCCCCEEECCC-CC
Q ss_conf 6714652032100554--2001234211112-------3456631223322222220122----2100010010355-44
Q gi|254780300|r 103 PNIIVIRHPYSGAVNS--LMHKIKGPSIINA-------GDGTHEHPSQALLDAFAIRHFK----GKISNLHIAICGD-IL 168 (316)
Q Consensus 103 ~d~iv~R~~~~~~~~~--~a~~~s~ppVINa-------g~~~~~HP~Q~LaDl~Ti~e~~----g~l~~l~ia~vGD-~~ 168 (316)
+| +|+-.|+.+.... +++.+..| ...+ |-+- =-|+|.+-+.- ++.++ ..++|.+|..|-| +.
T Consensus 292 ~D-iVi~VPdSg~~aa~gya~~sgip-~~~glikn~y~gRTF-I~p~q~~R~~~-v~~Kln~i~~~i~gK~vvlVDDSIV 367 (474)
T PRK06388 292 AD-VVVPVPDSGRSQAIGFSMASGIP-YTEGLIKNRYSERTF-IMPTQSDRKAA-IKLKLNPIREVISGKRIVLVDDSIV 367 (474)
T ss_pred CC-EEEECCCCHHHHHHHHHHHCCCC-CHHCEEECCCCCCCC-CCCCHHHHHHC-CCEEEEEEEEEECCCEEEEECCCCC
T ss_conf 88-89957886199999999865994-110056535447652-38867778744-4266665024417988999816616
Q ss_pred CCCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 33013344664201342---0553277532221
Q gi|254780300|r 169 HSRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 169 ~~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
.+++.++.+.++...|+ ++++++|+-..|-
T Consensus 368 RGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC 400 (474)
T PRK06388 368 RGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPC 400 (474)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 566799999999977998899997899967886
No 103
>TIGR00407 proA gamma-glutamyl phosphate reductase; InterPro: IPR000965 Gamma-glutamyl phosphate reductase (1.2.1.41 from EC) (GPR) is the enzyme that catalyzes the second step in the biosynthesis of proline from glutamate, the NADP-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. In bacteria (gene proA) and yeast (gene PRO2), GPR is a monofunctional protein, while in plants and mammals, it is a bifunctional enzyme (P5CS) that consists of two domains, an N-terminal glutamate 5-kinase domain (2.7.2.11 from EC) and a C-terminal GPR domain. ; GO: 0004350 glutamate-5-semialdehyde dehydrogenase activity, 0006561 proline biosynthetic process.
Probab=68.20 E-value=1.6 Score=23.49 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=31.8
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 33342247999874136714652032100554200123421111234566
Q gi|254780300|r 87 KGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTH 136 (316)
Q Consensus 87 kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~ 136 (316)
.+|.++| ...+..| +|+|+-|-. .+.+...-+.+.+| ||..|+|..
T Consensus 177 ~R~~v~e-LL~ld~Y-~Dl~iPRGg-~~L~~~~~~~s~iP-Vl~~g~G~C 222 (415)
T TIGR00407 177 DRELVSE-LLKLDEY-VDLIIPRGG-NGLVKLIKQESTIP-VLGHGDGIC 222 (415)
T ss_pred CHHHHHH-HHCCCCC-EEEEEECCC-HHHHHHHHHCCCCC-EECCCCEEE
T ss_conf 8889999-9600783-179973782-89999987157777-603675256
No 104
>PRK07660 consensus
Probab=67.64 E-value=9.8 Score=18.40 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 3301334466420134205532
Q gi|254780300|r 169 HSRVARSDIMLLNTMGARIRVI 190 (316)
Q Consensus 169 ~~~v~~S~~~~~~~~g~~v~~~ 190 (316)
...+.......+..+|..+.++
T Consensus 160 ~~~~~~~~~~~~~~lgk~pV~v 181 (283)
T PRK07660 160 DDAVYETIEDITKKIGKVPVEV 181 (283)
T ss_pred CHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7999999999998759427998
No 105
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.44 E-value=6.2 Score=19.68 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=25.9
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 00100103554433013344664201342055327753
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
+++++..|| +++|+.--+..+-..|++|++++|+-
T Consensus 23 ~klkvLVVG---GG~VA~RKi~~Ll~agA~VtVVSP~~ 57 (222)
T PRK05562 23 NKIKVLVIG---GGKAAFIKGKTFLKKGCYVEILSKEF 57 (222)
T ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 676699999---87999999999987899899987866
No 106
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=67.28 E-value=6 Score=19.78 Aligned_cols=146 Identities=10% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCC---CCCC---CCCCCCEEEE-EEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7822389999999999999999644204---8775---2128976999-9607873378999979876135211123333
Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHF---NPST---TRLQGLTQIN-LFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316)
Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~---~~~~---~~L~gk~~~~-lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316)
|.+-|++++-++.+-.+|..+.+..... ...+ ..|.|...+. -|.--....|..=+.=-.+.|. ++.++
T Consensus 32 i~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~~irvGg~~~r~~De~Ip~kyGi----vgqeT 107 (437)
T cd05298 32 LVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV----VGQET 107 (437)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCCC----CCCCC
T ss_conf 99977999999999999999998529981799967999985799999996652683267888767987597----76015
Q ss_pred CCCC---CC----CCCCCHHHHHHHHCCCCEEEECCCCC-HHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 2101---33----34224799987413671465203210-055420-012342111123456631223322222220122
Q gi|254780300|r 83 SAMK---KG----ENIADTIATLNALRPNIIVIRHPYSG-AVNSLM-HKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK 153 (316)
Q Consensus 83 s~~~---kg----Es~~Dta~vls~~~~d~iv~R~~~~~-~~~~~a-~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~ 153 (316)
...+ ++ =-+-|.++.+..+.+|++++-..... .+.+.. +.++...+|-.|.+.. +-...||.++=+.
T Consensus 108 ~G~GGi~~alRtiPv~ldia~di~e~cP~AwliNytNP~~~vt~al~~~~~~~k~vGLCh~~~-~~~~~la~~Lg~~--- 183 (437)
T cd05298 108 CGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLFPNARILNICDMPI-AIMDSMAAILGLD--- 183 (437)
T ss_pred CCCCHHHEEEEEHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHHHHCCC---
T ss_conf 664622401144999999999999879992899757878999999997489998898897889-9999999995898---
Q ss_pred CCCCCCCEEECC
Q ss_conf 210001001035
Q gi|254780300|r 154 GKISNLHIAICG 165 (316)
Q Consensus 154 g~l~~l~ia~vG 165 (316)
.+.+.+-+.|
T Consensus 184 --~~~v~~~~aG 193 (437)
T cd05298 184 --RKDLEPDYFG 193 (437)
T ss_pred --HHHEEEEEEE
T ss_conf --8991788961
No 107
>PRK12861 malic enzyme; Reviewed
Probab=66.53 E-value=10 Score=18.26 Aligned_cols=174 Identities=18% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHC-----CCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHCC-CCCCCCCC
Q ss_conf 34224799987413-----67146520321005542001234211112345663122332--222222012-22100010
Q gi|254780300|r 89 ENIADTIATLNALR-----PNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQAL--LDAFAIRHF-KGKISNLH 160 (316)
Q Consensus 89 Es~~Dta~vls~~~-----~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~L--aDl~Ti~e~-~g~l~~l~ 160 (316)
+.+-+|++.++--+ -|+-.-+++. ..+.+-+...+| |.- | + .|-|-.. |-++-=.+. .++++.+|
T Consensus 117 ~~~i~~v~~~~ptfgginledi~ap~cf~--ie~~l~~~~~ip-v~h--d-d-qhgtaii~~a~l~nal~~~~k~~~~~k 189 (762)
T PRK12861 117 DKLVDIIAGLEPTFGGINLEDIKAPECFT--VERKLRERMKIP-VFH--D-D-QHGTAITVAAAFINGLKVVGKSIKEVK 189 (762)
T ss_pred HHHHHHHHHHCCCCCCCCHHHCCCCCCHH--HHHHHHHHCCCC-EEC--C-C-CCCHHHHHHHHHHHHHHHHCCCHHHEE
T ss_conf 99999999858875623798768974027--999999867998-231--6-7-760899999999999998287565616
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCC---EEEECCCCCCCCCCCCC---------CCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 0103554433013344664201342---05532775322211212---------34330058456036862210001133
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGA---RIRVIAPITLLPKDISN---------MGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~~~~~---------~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
|+..|- +.-.-+-+.++..+|+ ++.+|--++..-+...+ +.-+-...++|++++|||..-.+..
T Consensus 190 iv~~Ga---Gaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfiG~S~~- 265 (762)
T PRK12861 190 VVTSGA---GAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPAKERFAQETDARTLAEVIGGADVFLGLSAG- 265 (762)
T ss_pred EEEECC---CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCC-
T ss_conf 999687---7889999999998399955589994778511898653579999998568977799983789889976789-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHC---------CCCCHHHHHHHH
Q ss_conf 1233344445554202357588999837998599558998768744767976---------997016868775
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVAD---------GSQSIIQYQVEM 292 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d---------~~~s~v~~Qa~N 292 (316)
=-++.++++.+.++.|++-+ +|..-||..+... .-||=|=.|.-|
T Consensus 266 -----------------~~~~~~mv~~Ma~~pivfal--ANP~PEI~p~~a~~~r~~~i~aTGRSD~pNQvNN 319 (762)
T PRK12861 266 -----------------GVLKAEMLKAMAARPLILAL--ANPTPEIFPELAHATRDDVVIATGRSDYPNQVNN 319 (762)
T ss_pred -----------------CCCCHHHHHHHCCCCEEEEC--CCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCC
T ss_conf -----------------98999999853778769972--6999888989985416868983488788531245
No 108
>PRK09117 consensus
Probab=66.48 E-value=10 Score=18.25 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=9.0
Q ss_pred HHHCCHHHHHHHHHHHHH
Q ss_conf 223899999999999999
Q gi|254780300|r 12 VKDLSMQDVNYLLDRANE 29 (316)
Q Consensus 12 ~~dl~~~el~~ll~~A~~ 29 (316)
+-|.+++.+..-.++...
T Consensus 30 l~D~~~~~l~~~~~~i~~ 47 (282)
T PRK09117 30 MVDISDAAVQRGLATVAG 47 (282)
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 998988999999999999
No 109
>PRK05282 peptidase E; Validated
Probab=66.29 E-value=5.6 Score=19.97 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 98741367146520321005542001234211112345663122332222222012221000100103554433013344
Q gi|254780300|r 97 TLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSD 176 (316)
Q Consensus 97 vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~ 176 (316)
.+..++..+..+-+. ....+..+.+... .|.+|.+ + +=.|.|-+.=-+.-.+..+.+ -..|+|-..++||+---
T Consensus 56 af~~lg~~v~gih~~--~dp~~AI~~Ad~I-~vgGGNT-F-~Ll~~L~~~gl~~~ir~~V~~-G~pYiG~SAGsnia~pt 129 (233)
T PRK05282 56 VLAPLGIEVTGIHRV--EDPVAAIENADGI-IVGGGNT-F-QLLKQLYERGLLAPIREAVKN-GTPYIGWSAGANVACPT 129 (233)
T ss_pred HHHHCCCEEEEEECC--CCHHHHHHHCCEE-EECCCCH-H-HHHHHHHHCCCHHHHHHHHHC-CCCEEEECCHHHHCCCC
T ss_conf 998669828876245--8989999749979-9869739-9-999999985829999999984-99779626415405786
Q ss_pred HHHHHCCCCEEEECCCCC
Q ss_conf 664201342055327753
Q gi|254780300|r 177 IMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 177 ~~~~~~~g~~v~~~~P~~ 194 (316)
|.-..-|+ ++.|+.
T Consensus 130 I~TTNDMP----Iv~pps 143 (233)
T PRK05282 130 IRTTNDMP----IVDPPS 143 (233)
T ss_pred CCCCCCCC----CCCCCC
T ss_conf 54568987----437988
No 110
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=65.35 E-value=5.2 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=4.7
Q ss_pred HCCCCEEEECCC
Q ss_conf 013420553277
Q gi|254780300|r 181 NTMGARIRVIAP 192 (316)
Q Consensus 181 ~~~g~~v~~~~P 192 (316)
+..|..++.+++
T Consensus 121 a~vg~g~t~i~~ 132 (266)
T COG0345 121 ALVGAGVTAISA 132 (266)
T ss_pred HHHCCCCEEEEC
T ss_conf 897175226513
No 111
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=64.76 E-value=11 Score=18.04 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=25.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC
Q ss_conf 979876135211123333210133342247999874136714652032100554200123
Q gi|254780300|r 65 EVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK 124 (316)
Q Consensus 65 e~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s 124 (316)
..|+.+||..++.++++..+..+. +.| +-+.|..++.+...+.++++.+.
T Consensus 15 ~~aA~~LG~~~~VL~~~~~~PA~q--~Ad--------~~~~v~a~~~d~~~i~~La~~cD 64 (386)
T TIGR01161 15 ALAAKKLGIKVAVLDPDANSPAKQ--VAD--------SREHVLASFTDPEAIRELAEACD 64 (386)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCC--CCC--------CCCEEEEEECCHHHHHHHHHHCC
T ss_conf 998712795899854898973111--289--------85579985148789999997656
No 112
>pfam10561 UPF0565 Uncharacterized protein family UPF0565. This family of proteins has no known function.
Probab=64.58 E-value=8.4 Score=18.82 Aligned_cols=104 Identities=16% Similarity=0.025 Sum_probs=55.7
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC--CC---CCCCCCCCCCCHHHHHHHHC--CCCEEEECCCCCHHHH
Q ss_conf 97699996078733789999798761352111233--33---21013334224799987413--6714652032100554
Q gi|254780300|r 46 GLTQINLFLETSTRTQTSFEVAGKLLGVHVININT--KN---SAMKKGENIADTIATLNALR--PNIIVIRHPYSGAVNS 118 (316)
Q Consensus 46 gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~--~~---s~~~kgEs~~Dta~vls~~~--~d~iv~R~~~~~~~~~ 118 (316)
.|.-..|+..|..+|.-.=..++...||.+.+|.. .. ..-...=+++.+|.+|+.-+ ..++|+|-..- ....
T Consensus 12 ~R~N~ily~~p~~~~~~~~~~~vifFpGDvqdf~e~m~~~~~n~~~~~wslE~vA~iL~~rFp~shIwvIrpSrm-~~~~ 90 (299)
T pfam10561 12 NRVNDILYLEPILITQSYPSKNVIFFPGDYQNFFENMQQNPNSCQYYCWSLENVAWILSSRFPNSHIWVIRASRF-NLNK 90 (299)
T ss_pred CCCCEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCEE-ECCC
T ss_conf 355606970644567678861699889728789999872902026410269999999998689861899976431-1573
Q ss_pred HHCCCCCCCCCCCCCCCCCC-H-HHHHHHHHHHH
Q ss_conf 20012342111123456631-2-23322222220
Q gi|254780300|r 119 LMHKIKGPSIINAGDGTHEH-P-SQALLDAFAIR 150 (316)
Q Consensus 119 ~a~~~s~ppVINag~~~~~H-P-~Q~LaDl~Ti~ 150 (316)
++-+..-++..|+|.-.++- | --|+-.+..+.
T Consensus 91 FScYdNFv~~n~~G~P~~~~~~~~~a~~HL~~LL 124 (299)
T pfam10561 91 FSCYSNFVNSNNFGAPEHYSPSDFKAIQHLLSLL 124 (299)
T ss_pred EEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 2487605563447899988877762899999999
No 113
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=64.53 E-value=5.2 Score=20.17 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 1234211112345663122332222222012221000100103554433013344664201342055327753
Q gi|254780300|r 122 KIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 122 ~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
....|| |.+.+...-|.+..+.|...|++....-+..+++.+|- +-+.--+..++..+|.+|+++....
T Consensus 102 ~p~~p~-i~g~~~~~V~~lr~~~Da~~i~~~l~~~~~k~vvViGg---G~IGlE~A~~l~~~G~~Vtvve~~~ 170 (427)
T TIGR03385 102 SPIIPN-IEGINLDITFTLRNLEDTDAIKQYIDANKVDRVVIIGG---GYIGLEMVEALRERGKNVTLIHRSD 170 (427)
T ss_pred CCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 856799-99867898899799999999999875079988999996---3999999999997699899998468
No 114
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=64.25 E-value=2.7 Score=22.04 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC--CC-----------CCCCCHHHHHHHH--HHCCCCEEEECCC
Q ss_conf 1112345663122332222222012221000100103--55-----------4433013344664--2013420553277
Q gi|254780300|r 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC--GD-----------ILHSRVARSDIML--LNTMGARIRVIAP 192 (316)
Q Consensus 128 VINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v--GD-----------~~~~~v~~S~~~~--~~~~g~~v~~~~P 192 (316)
-||.|-|+. |+=|.+=+--.|-+-.|.- ++|+-. |+ +.++ --+++- --.+.|||.+++|
T Consensus 43 a~~LG~Dpr-KsDQ~vRG~vvLP~GtGK~--~RVaVfa~G~~~~eA~~AGAD~VG~---~DLie~Ik~G~~dFDV~IATP 116 (227)
T TIGR01169 43 AIRLGIDPR-KSDQQVRGTVVLPHGTGKT--VRVAVFAKGEKAKEAKAAGADYVGS---DDLIEKIKKGWLDFDVVIATP 116 (227)
T ss_pred EEECCCCCC-CCCCEEEEEEECCCCCCCC--EEEEEECCCHHHHHHHHCCCEEECC---HHHHHHHHCCCCCEEEEECCH
T ss_conf 887475885-3783051138657677862--5899971643488898709804448---879999955898502588275
Q ss_pred ---------------CCCCCCCCCCCCCCCCCCHHHCCCCC-----------CEEEEEEECCHHHHHHH
Q ss_conf ---------------53222112123433005845603686-----------22100011331233344
Q gi|254780300|r 193 ---------------ITLLPKDISNMGVEVFHDMQKGLKNV-----------DVIMILRMQQERIPRSL 235 (316)
Q Consensus 193 ---------------~~~~~~~~~~~~~~~~~d~~ea~~~a-----------Dvv~~~~~~~e~~~~~~ 235 (316)
.+|||+-..+ ++|.|+.+|++++ .=++=..++.-.|.++.
T Consensus 117 DmM~~VGkLG~iLGPRGLMPNPK~G---TVT~dva~Av~~~K~G~vefR~DK~G~iH~~~GK~SF~~~~ 182 (227)
T TIGR01169 117 DMMRKVGKLGRILGPRGLMPNPKTG---TVTADVAKAVKEAKKGRVEFRADKAGNIHAPIGKVSFDEEK 182 (227)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC---CCCHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCHHH
T ss_conf 7768876331004788847535966---52243799999872795046515851587775266688899
No 115
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=62.74 E-value=12 Score=17.85 Aligned_cols=129 Identities=18% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHCCCCEEEECCCCCHHHH--------------HHCCCCCCC-
Q ss_conf 9979876135211123333210133-342247999874136714652032100554--------------200123421-
Q gi|254780300|r 64 FEVAGKLLGVHVININTKNSAMKKG-ENIADTIATLNALRPNIIVIRHPYSGAVNS--------------LMHKIKGPS- 127 (316)
Q Consensus 64 Fe~A~~~LGg~~i~l~~~~s~~~kg-Es~~Dta~vls~~~~d~iv~R~~~~~~~~~--------------~a~~~s~pp- 127 (316)
-|.|....+|.+|. .+.++.-| |.+.+.++.+-.|++-+|++--++.+.... +...+-.||
T Consensus 445 iEaaLk~~~Gk~ii---NSinlkeGee~~~~~~~l~kkYGAavV~L~~DE~G~a~tae~k~~Ia~R~y~~l~~~~Gi~~~ 521 (1229)
T PRK09490 445 IEAGLKCIQGKGIV---NSISLKEGEEKFIHHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILVEEVGFPPE 521 (1229)
T ss_pred HHHHHHHCCCCEEE---EECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999863994567---742101155879998799997297489984067778878999999999999999997499899
Q ss_pred -------CCCCCCCCCCCHHHHHHHHHHHHCCCC---------CCCCCCEEECCCCCCCCHHHHHH-HHHHCCCCEEEEC
Q ss_conf -------111234566312233222222201222---------10001001035544330133446-6420134205532
Q gi|254780300|r 128 -------IINAGDGTHEHPSQALLDAFAIRHFKG---------KISNLHIAICGDILHSRVARSDI-MLLNTMGARIRVI 190 (316)
Q Consensus 128 -------VINag~~~~~HP~Q~LaDl~Ti~e~~g---------~l~~l~ia~vGD~~~~~v~~S~~-~~~~~~g~~v~~~ 190 (316)
|.-.+.|..+|...++.=+=+|++.+. .++|+++.+-|..-.-.+.||-. ..+-.-|.+.-++
T Consensus 522 dIifDpl~ltv~tg~ee~~~~a~etieair~ik~~lp~~~t~lGvSNiSFGlrGn~p~R~~lns~FL~~a~~aGLd~aIv 601 (1229)
T PRK09490 522 DIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKENLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGIV 601 (1229)
T ss_pred HEEECCCHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 96861431000258367775899999999999997899647222032001477886279999999999999718771555
Q ss_pred CCCCC
Q ss_conf 77532
Q gi|254780300|r 191 APITL 195 (316)
Q Consensus 191 ~P~~~ 195 (316)
-|...
T Consensus 602 Np~~~ 606 (1229)
T PRK09490 602 NAGQL 606 (1229)
T ss_pred CCCCC
T ss_conf 61103
No 116
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=62.14 E-value=10 Score=18.21 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=37.6
Q ss_pred CCCEEEECCCCCHHH---HHHCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE-ECCCCCCCCHHHHHH
Q ss_conf 671465203210055---420012-342111123456631223322222220122210001001-035544330133446
Q gi|254780300|r 103 PNIIVIRHPYSGAVN---SLMHKI-KGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA-ICGDILHSRVARSDI 177 (316)
Q Consensus 103 ~d~iv~R~~~~~~~~---~~a~~~-s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia-~vGD~~~~~v~~S~~ 177 (316)
+|++++-.|++.... .+..+. ...++|++.=|......+.+.|++ .|..+. ..+++ +.|. +.+.
T Consensus 72 ad~iiiavPs~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~seii--~~~l~~--~~~~~~lsGP----~~A~--- 140 (325)
T PRK00094 72 ADLILVAVPSHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSEVA--EEELPD--QAPLAVLSGP----SFAK--- 140 (325)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHHHH--HHHCCC--CCCEEEEECC----CHHH---
T ss_conf 9849994576999999999986468997499976556248875199999--997399--9867998177----4299---
Q ss_pred HHHHCCCCEEEECCCCC
Q ss_conf 64201342055327753
Q gi|254780300|r 178 MLLNTMGARIRVIAPIT 194 (316)
Q Consensus 178 ~~~~~~g~~v~~~~P~~ 194 (316)
+.+...+..++++++..
T Consensus 141 Eva~~~pt~~vias~~~ 157 (325)
T PRK00094 141 EVAQGLPTALVIASTDE 157 (325)
T ss_pred HHHCCCCEEEEECCCCH
T ss_conf 99808983999507999
No 117
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=61.61 E-value=3.7 Score=21.15 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=42.5
Q ss_pred CCCCCCCCCCHHHHHHHH---------HHHHCCCCCCCC---CCEEECCCC-------CCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 112345663122332222---------222012221000---100103554-------4330133446642013420553
Q gi|254780300|r 129 INAGDGTHEHPSQALLDA---------FAIRHFKGKISN---LHIAICGDI-------LHSRVARSDIMLLNTMGARIRV 189 (316)
Q Consensus 129 INag~~~~~HP~Q~LaDl---------~Ti~e~~g~l~~---l~ia~vGD~-------~~~~v~~S~~~~~~~~g~~v~~ 189 (316)
|-=||+-===|+|+|.|. +.|.++.|-.-| +.+|.-+|- .|-||-||-.++.+..|+-+.-
T Consensus 241 VHTGdSIVVAPSQTLtD~EYQ~LR~~sikIIR~lGi~GgGCNvQFAL~P~s~~Y~vIEvNPRvSRSSALASKATGYPiAk 320 (1089)
T TIGR01369 241 VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIVGGGCNVQFALDPDSGRYYVIEVNPRVSRSSALASKATGYPIAK 320 (1089)
T ss_pred EEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHH
T ss_conf 57078336507636880789999999999998739121674213215078970699986788213589876651662899
Q ss_pred CC
Q ss_conf 27
Q gi|254780300|r 190 IA 191 (316)
Q Consensus 190 ~~ 191 (316)
++
T Consensus 321 vA 322 (1089)
T TIGR01369 321 VA 322 (1089)
T ss_pred HH
T ss_conf 99
No 118
>pfam00843 Arena_nucleocap Arenavirus nucleocapsid protein.
Probab=61.16 E-value=13 Score=17.62 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCC-HHHHHHHHHHHHHCC----CC
Q ss_conf 9977777417822389999999999999999644204877521289769999607873-378999979876135----21
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETST-RTQTSFEVAGKLLGV----HV 75 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpSt-RTR~SFe~A~~~LGg----~~ 75 (316)
|++-.-+++|.+-+|+++|+..|-.--.++|++-.+.+. ..-+|-..+++=...=+ |..+==-++|.+-++ -+
T Consensus 77 mkS~Qk~~~lkvG~LskdeLm~LasDLeKLk~Kv~rtEr--~~~~GvY~GNLt~~QL~~Rs~iL~~~G~~~~~~~~~GVV 154 (534)
T pfam00843 77 MKSVQKNNVLKVGGLSKDELMELASDLEKLKKKVMRTER--SGTPGVYMGNLTTSQLDQRSEILRLVGMRQPQGGRNGVV 154 (534)
T ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 542043616873576778999998789999998731357--899862325656888999999999847688889999869
Q ss_pred CCCCCCCCC------------------CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCC
Q ss_conf 112333321------------------013334224799987413671465203210055420012
Q gi|254780300|r 76 ININTKNSA------------------MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKI 123 (316)
Q Consensus 76 i~l~~~~s~------------------~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~ 123 (316)
-.-|-++++ ...||++-|.+.-+...+ =+.-+..|.-..++.+....
T Consensus 155 rvWDVkd~slL~NQFGsmPalTiACMt~Qgge~lNdVVQ~Lt~LG-LlYT~KyPNl~DLekLt~~H 219 (534)
T pfam00843 155 RVWDVKDPSLLNNQFGSMPALTIACMTKQGGETLNDVVQALTDLG-LLYTVKYPNLSDLEKLTQKH 219 (534)
T ss_pred EEEECCCHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC-EEEEEECCCHHHHHHHHHHC
T ss_conf 997458878887403775589999988724870788999864235-15764069778899876529
No 119
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.26 E-value=8.9 Score=18.66 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 17822389999999999999999644204877521289769999607873378999979876135211123333210133
Q gi|254780300|r 9 FVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKG 88 (316)
Q Consensus 9 fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kg 88 (316)
|.-+-+|+..-++.|++...+...-.+. .+.-.|+. -...||-.-++ +.++|.. .+.|++ ++..
T Consensus 6 F~GTp~fa~~~L~~L~~~~~eivaV~Tq----pdkp~gR~---~~l~~spVk~~-----A~~~~ip--v~qP~~--l~~~ 69 (307)
T COG0223 6 FFGTPEFAVPSLEALIEAGHEIVAVVTQ----PDKPAGRG---KKLTPSPVKRL-----ALELGIP--VFQPEK--LNDP 69 (307)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEEC----CCCCCCCC---CCCCCCHHHHH-----HHHCCCC--EECCCC--CCCH
T ss_conf 9767445499999998289804899948----99766787---85888838999-----9974995--566444--7868
Q ss_pred CCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 34224799987413671465203
Q gi|254780300|r 89 ENIADTIATLNALRPNIIVIRHP 111 (316)
Q Consensus 89 Es~~Dta~vls~~~~d~iv~R~~ 111 (316)
+....+..+.+|+++.-.+
T Consensus 70 ----e~~~~l~~l~~D~ivvvay 88 (307)
T COG0223 70 ----EFLEELAALDPDLIVVVAY 88 (307)
T ss_pred ----HHHHHHHCCCCCEEEEEEH
T ss_conf ----9999986039999999742
No 120
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=59.81 E-value=7.6 Score=19.11 Aligned_cols=52 Identities=12% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCC--CCCCCCCCCC--CCCCCCCCCC-----HHHHHHHHCCCCEEEECCCCCH
Q ss_conf 999979876135--2111233332--1013334224-----7999874136714652032100
Q gi|254780300|r 62 TSFEVAGKLLGV--HVININTKNS--AMKKGENIAD-----TIATLNALRPNIIVIRHPYSGA 115 (316)
Q Consensus 62 ~SFe~A~~~LGg--~~i~l~~~~s--~~~kgEs~~D-----ta~vls~~~~d~iv~R~~~~~~ 115 (316)
-|+..|..+-|- ++..++.+.. ...+..-+.| ....+. .+|+|++-+|-...
T Consensus 19 gSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~~--~~DlIilatPv~~~ 79 (307)
T PRK07502 19 SSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAVK--GADLVILCVPVGAS 79 (307)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHHC--CCCEEEEECCHHHH
T ss_conf 99999998549985799984999999999986997511277766404--58979991789999
No 121
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=59.72 E-value=13 Score=17.60 Aligned_cols=88 Identities=15% Similarity=0.234 Sum_probs=51.0
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC-CCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
Q ss_conf 03554433013344664201342055327753222-1121-234330058456036862210001133123334444555
Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP-KDIS-NMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIR 240 (316)
Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-~~~~-~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~ 240 (316)
++|. ++|..++-.++..-|..+.-+.-..-.. +... ... ....++.|.+..+|+|+.+. +++....
T Consensus 2 iIGa---GrvG~~L~~al~~aGh~v~gv~srs~~s~~~a~~~~~-~~~~~~~ev~~~adlv~itv------PDd~I~~-- 69 (111)
T pfam10727 2 IISA---GRVGVALGEALERAGHVVHAISAISDASRERAERRLD-SPVLPIPDVIRRAELVVLAV------PDAELPG-- 69 (111)
T ss_pred CCCC---CHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCC-CCCCCHHHHHHHCCEEEEEC------CHHHHHH--
T ss_conf 4376---5779999999997898289998389889999998669-97679589897679999989------7888999--
Q ss_pred HHCCCCCCCHHHHHHCCCCCEEECCCCCC
Q ss_conf 42023575889998379985995589987
Q gi|254780300|r 241 EYKHVYSLDEKKLKYAKKDALVMHPGPIN 269 (316)
Q Consensus 241 ~~~~~~~v~~~~l~~a~~~ai~mHcLP~~ 269 (316)
+-+++-+..+++-+|+||=.++
T Consensus 70 -------vv~~la~~~~~GqiV~HtSGa~ 91 (111)
T pfam10727 70 -------LVEGLAATVRRGQIVAHTSGAH 91 (111)
T ss_pred -------HHHHHHHHCCCCCEEEECCCCC
T ss_conf -------9999983267997999866875
No 122
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=59.51 E-value=14 Score=17.44 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHC-CCC-EEEECCCCCC----CCCCC--CCCCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 00100103554433013344664201-342-0553277532----22112--1234330058456036862210001133
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNT-MGA-RIRVIAPITL----LPKDI--SNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~-~g~-~v~~~~P~~~----~~~~~--~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
+..+++++|- +..+++.+.++.. ++. ++.+..+..- +.+.. .+..+....++++++.+||+|++.....
T Consensus 128 da~~l~iiGa---G~QA~~~l~al~~v~~i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~s~ 204 (312)
T pfam02423 128 DASTLAIIGA---GAQAEFQAEALSAVLPIEEIRIYDRDPEAAEKFARNLQGKGFEIVACTSAEEAVEGADIVVTVTPDK 204 (312)
T ss_pred CCCEEEEECC---CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCEEEEEECCC
T ss_conf 9757999646---2538999999996199768999968989999999999834996599489999971499899973599
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC-CCCCCCHHHHCC
Q ss_conf 12333444455542023575889998379985995589987-687447679769
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPIN-RNYEISSSVADG 281 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~-Rg~Ev~~~v~d~ 281 (316)
+. + -++.+++ ++++.+..-..-. -..|++++++..
T Consensus 205 ~~------P---------~~~~~~l---~~G~hv~~vGs~~p~~~El~~~~~~~ 240 (312)
T pfam02423 205 EF------P---------ILKAEWV---KPGVHINAVGADCPGKTELDPDILLR 240 (312)
T ss_pred CC------C---------CCCHHHC---CCCCEEEEECCCCCCCCCCCHHHHHC
T ss_conf 77------5---------0077883---89868997269999704368999820
No 123
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=58.90 E-value=14 Score=17.37 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=87.9
Q ss_pred EEECCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC-----
Q ss_conf 960787--3378999979876135211123333210133342247999874136714652032100554200123-----
Q gi|254780300|r 52 LFLETS--TRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK----- 124 (316)
Q Consensus 52 lF~kpS--tRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s----- 124 (316)
+|=.|- .+.-.=+..+...+|....|.--+- ..|.+++....+.......+-+--|+...+..+....+
T Consensus 10 liG~pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~~~l~~~i~~l~~~~~~G~nVT~P~K~~v~~~ld~l~~~A~~ 85 (275)
T PRK00258 10 VIGNPIAHSKSPFIHNAAAKQLGLDGEYLAFLV----PLDDLEDAVRGFFALGGKGANVTVPFKEAAFALADELSERARL 85 (275)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHH
T ss_conf 988882413079999999998699938998878----8889999999777669877996689899998624602177887
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCC---
Q ss_conf ---4211112345663122332222222012221000100103554433013344664201342-055327753222---
Q gi|254780300|r 125 ---GPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLP--- 197 (316)
Q Consensus 125 ---~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~--- 197 (316)
+--|++-......|-|-...=+.++.+......+.++..+|- +-+++|.+.++...|. ++.++....-..
T Consensus 86 igavNTi~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGa---GGaarai~~al~~~g~~~i~i~nR~~~~a~~l 162 (275)
T PRK00258 86 AGAVNTLVLEDGRLIGDNTDGIGFVRDLERLGLDLKGKRILLLGA---GGAARAVILPLLELGVAEITIVNRTVERAEEL 162 (275)
T ss_pred HCCEEEEEEECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECC---CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 455458995599899983677899999998487856875999888---71079999999976999899995899999999
Q ss_pred -CCCC-CCCCCCCCCHHHCCCCCCEEE-EEEEC
Q ss_conf -1121-234330058456036862210-00113
Q gi|254780300|r 198 -KDIS-NMGVEVFHDMQKGLKNVDVIM-ILRMQ 227 (316)
Q Consensus 198 -~~~~-~~~~~~~~d~~ea~~~aDvv~-~~~~~ 227 (316)
+... ........+......++|+|+ +++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~diiInaTp~G 195 (275)
T PRK00258 163 AELFGEGVQALGLDELAGELADFDLIINTTSAG 195 (275)
T ss_pred HHHHCCCCCEEEHHHHHHCCCCCCEEEECCCCC
T ss_conf 998356762753787543044577799657777
No 124
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=58.77 E-value=14 Score=17.36 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=65.1
Q ss_pred CCCCCCHHHHHHHHC-------CCCEEEECCCCCHHHH--HHCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHC
Q ss_conf 334224799987413-------6714652032100554--200123421111-------234566312233222222201
Q gi|254780300|r 88 GENIADTIATLNALR-------PNIIVIRHPYSGAVNS--LMHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRH 151 (316)
Q Consensus 88 gEs~~Dta~vls~~~-------~d~iv~R~~~~~~~~~--~a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e 151 (316)
|.+++++=+.+.... +| +|+-.|+.+.... +++.+..| .-- .|-+-. -|+|.+=+.. ++.
T Consensus 262 g~~Vy~~R~~~G~~LA~e~~~~~D-vVi~VPDSg~~aA~gya~~sgip-~~~glikn~yvgRTFI-~p~q~~R~~~-v~~ 337 (475)
T PRK07631 262 GINVHTARKNLGKQLAEEAPVEAD-VVTGVPDSSISAAIGYAEATGIP-YELGLIKNRYVGRTFI-QPSQALREQG-VKM 337 (475)
T ss_pred CEEHHHHHHHHHHHHHHHCCCCCC-EEEECCCCHHHHHHHHHHHCCCC-HHHHHHCCCEECCCCC-CCCHHHHHHH-HHC
T ss_conf 706999999999999832798788-89978996388999999872995-4541100130146577-9758899874-420
Q ss_pred C----CCCCCCCCEEECCC-CCCCCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 2----22100010010355-4433013344664201342---0553277532221
Q gi|254780300|r 152 F----KGKISNLHIAICGD-ILHSRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 152 ~----~g~l~~l~ia~vGD-~~~~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+ ...++|.+|..|-| +..+++.+..+.++...|+ ++++++|+-..|-
T Consensus 338 Kln~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc 392 (475)
T PRK07631 338 KLSAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIAHPC 392 (475)
T ss_pred CEEECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 1424420038973799744351064199999999976998899996899857876
No 125
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=58.29 E-value=8.1 Score=18.92 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 234211112345663122332222222012221000100103554433013344664201342055327753
Q gi|254780300|r 123 IKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 123 ~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
...||+.++ ++..-|.+..+.|...|++.... +.+++.+|- +.+.--....+...|.+|+++.+..
T Consensus 112 p~~lp~~~~-~~~~V~~lrt~~Da~~l~~~l~~--~k~vvVIGg---G~IGlE~A~~l~~~G~~Vtvve~~~ 177 (400)
T PRK09754 112 ARPLPLLDA-LGERCFTLRHAGDAARLREVLQP--ERSVVIVGA---GTIGLELAASATQRRCKVTVIELAA 177 (400)
T ss_pred CCCCCCCCC-CCCCEEEECCHHHHHHHHHHHCC--CCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 756899888-88998997799999999987615--873999885---5899999999997599489995346
No 126
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=57.50 E-value=12 Score=17.76 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHC--CCCCCCCCCEEECCC--------CC------CCCHHHHHHHHHHCCCCEEEECC-CCC
Q ss_conf 34566312233222222201--222100010010355--------44------33013344664201342055327-753
Q gi|254780300|r 132 GDGTHEHPSQALLDAFAIRH--FKGKISNLHIAICGD--------IL------HSRVARSDIMLLNTMGARIRVIA-PIT 194 (316)
Q Consensus 132 g~~~~~HP~Q~LaDl~Ti~e--~~g~l~~l~ia~vGD--------~~------~~~v~~S~~~~~~~~g~~v~~~~-P~~ 194 (316)
|.|....|...+.-+..+.. ..+++.|++|...+- ++ -+.+..++...+...|++|++++ |-.
T Consensus 229 G~GRl~ep~~Iv~~i~~~l~~~~~~~L~GkkVLITAGpT~E~IDPVR~IsN~SSGKmG~aiA~aa~~rGA~VtLIsGp~~ 308 (476)
T PRK13982 229 GVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 308 (476)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 77889999999999999872145555679889996688712226745577668519999999999967997999956677
Q ss_pred C-CCCCCCCCCCCCCCCHHHCCC---CCCEEE
Q ss_conf 2-221121234330058456036---862210
Q gi|254780300|r 195 L-LPKDISNMGVEVFHDMQKGLK---NVDVIM 222 (316)
Q Consensus 195 ~-~~~~~~~~~~~~~~d~~ea~~---~aDvv~ 222 (316)
+ .|..+.--.++-..++.++++ .+|+++
T Consensus 309 l~~P~gv~~i~V~tA~eM~~av~~~~~~Di~I 340 (476)
T PRK13982 309 LRDPQGVKVIHVESAREMLAAVEAALPADIAI 340 (476)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCHHH
T ss_conf 77899846998879999999997331326335
No 127
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=56.99 E-value=9.3 Score=18.53 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCEEEECCCCCHHHHHHCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE--CCCC-CCCCHHHHHHH
Q ss_conf 6714652032100554200123-421111234566312233222222201222100010010--3554-43301334466
Q gi|254780300|r 103 PNIIVIRHPYSGAVNSLMHKIK-GPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAI--CGDI-LHSRVARSDIM 178 (316)
Q Consensus 103 ~d~iv~R~~~~~~~~~~a~~~s-~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~--vGD~-~~~~v~~S~~~ 178 (316)
+|+|+.= .+=-..++.++.+ ..-|.|- -+.. .|..-|+|+=....|.+ |+= .||. .++ -..-.+.
T Consensus 25 ADvilYA--GSLV~~~~L~~~r~~Ae~~~s-A~m~---L~ei~~~m~~a~~~GK~----VvRLHsGDPsIYG-A~~EQ~~ 93 (252)
T TIGR01465 25 ADVILYA--GSLVPPELLAHCRPGAEVVNS-AAMS---LEEIVDIMVDAVREGKL----VVRLHSGDPSIYG-AIAEQMQ 93 (252)
T ss_pred CCEEEEC--CCCCHHHHHHHCCCCCEEEEC-CCCC---HHHHHHHHHHHHHCCCE----EEEEECCCHHHHH-HHHHHHH
T ss_conf 9979996--877817899727898888605-0269---88999999999866984----9998508755776-6999999
Q ss_pred HHHCCCCEEEEC
Q ss_conf 420134205532
Q gi|254780300|r 179 LLNTMGARIRVI 190 (316)
Q Consensus 179 ~~~~~g~~v~~~ 190 (316)
.|..+|+.+.++
T Consensus 94 ~L~~~gI~~e~v 105 (252)
T TIGR01465 94 LLEALGIPYEVV 105 (252)
T ss_pred HHHHCCCCEEEE
T ss_conf 998678977986
No 128
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=56.73 E-value=15 Score=17.14 Aligned_cols=13 Identities=8% Similarity=-0.056 Sum_probs=6.6
Q ss_pred EEEECCCCHHHHH
Q ss_conf 9960787337899
Q gi|254780300|r 51 NLFLETSTRTQTS 63 (316)
Q Consensus 51 ~lF~kpStRTR~S 63 (316)
.+|-=||--.|-.
T Consensus 75 iv~avPs~~~r~v 87 (329)
T COG0240 75 IVIAVPSQALREV 87 (329)
T ss_pred EEEECCHHHHHHH
T ss_conf 9997875789999
No 129
>PRK07589 ornithine cyclodeaminase; Validated
Probab=56.53 E-value=9.9 Score=18.35 Aligned_cols=66 Identities=12% Similarity=0.311 Sum_probs=35.7
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHH-CCCC-EEEECCC--CCC--CCCCCC--CCCCCCCCCHHHCCCCCCEEEEEEE
Q ss_conf 010010355443301334466420-1342-0553277--532--221121--2343300584560368622100011
Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLN-TMGA-RIRVIAP--ITL--LPKDIS--NMGVEVFHDMQKGLKNVDVIMILRM 226 (316)
Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~-~~g~-~v~~~~P--~~~--~~~~~~--~~~~~~~~d~~ea~~~aDvv~~~~~ 226 (316)
-.+++++|- +.-+...+.++. .++. ++.+... +.. +.++.. +..+..+.++++++.+||+|.+...
T Consensus 129 s~~l~iIGt---G~QA~~Q~~A~~~vr~i~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~~ADIIvTaT~ 202 (346)
T PRK07589 129 SRTMALIGN---GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVEGADIITTVTA 202 (346)
T ss_pred CCEEEEECC---CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEEECC
T ss_conf 876999747---08899999999985898689998288799999999987269808994999999721988887114
No 130
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=56.37 E-value=15 Score=17.10 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHC----CC---CCCCCCCEEECCCCCCCCHHHH-HHHHHHCCCCEEEECC--C-------------C
Q ss_conf 312233222222201----22---2100010010355443301334-4664201342055327--7-------------5
Q gi|254780300|r 137 EHPSQALLDAFAIRH----FK---GKISNLHIAICGDILHSRVARS-DIMLLNTMGARIRVIA--P-------------I 193 (316)
Q Consensus 137 ~HP~Q~LaDl~Ti~e----~~---g~l~~l~ia~vGD~~~~~v~~S-~~~~~~~~g~~v~~~~--P-------------~ 193 (316)
..-.|.|-|++-... .. .--+|.++++||. .||.-| ++.++..- +=.+++ | +
T Consensus 197 ~~~~~~L~~i~~~~~aq~~~~vl~~l~~g~k~ai~G~---~NvGKSSLLNa~l~~--DrAiVS~~kGtTRD~vE~~~~L~ 271 (473)
T TIGR00450 197 EKIIAELKDILNSANAQRSKKVLEKLKDGFKLAIVGK---PNVGKSSLLNALLKQ--DRAIVSDIKGTTRDVVEGDFELN 271 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---CCCCHHHHHHHHHHC--CCEEEECCCCCCCCEEEEEEEEC
T ss_conf 9999999999987641003458998408947999647---887578999987622--87055276688320442057774
Q ss_pred CCCCCCCCCCCCCCCCCH-H--------HCCCCCCEE-EEEEECCHH
Q ss_conf 322211212343300584-5--------603686221-000113312
Q gi|254780300|r 194 TLLPKDISNMGVEVFHDM-Q--------KGLKNVDVI-MILRMQQER 230 (316)
Q Consensus 194 ~~~~~~~~~~~~~~~~d~-~--------ea~~~aDvv-~~~~~~~e~ 230 (316)
|+.-+-...+|++...|- + ++++.||.| |+.-..+..
T Consensus 272 G~~~~~lDTAGiR~~~~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~ 318 (473)
T TIGR00450 272 GILVKLLDTAGIREHADKVERLGIEKSFKAIKQADLVIYVLDASQPL 318 (473)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 67899851467510200466776899899986057347888747898
No 131
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=56.29 E-value=9.9 Score=18.35 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 211112345663122332222222012221000100103554433013344664201342055327753
Q gi|254780300|r 126 PSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 126 ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
|+..+ .+.+.-|....+.|...+++....-+..+++.+|- +-+.--+...+..+|.+|+++....
T Consensus 117 p~~~g-~~~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGg---G~IGlE~A~~l~~~G~~Vtlie~~~ 181 (438)
T PRK13512 117 ANSLG-FESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGA---GYVSLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCCCC-CCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 87668-78998799799999999999886179977999895---5899999999997299089999357
No 132
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=55.79 E-value=12 Score=17.77 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=57.8
Q ss_pred EEEECCCCCHHHH--HHCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCCC
Q ss_conf 4652032100554--200123421111-------2345663122332222222012----22100010010355-44330
Q gi|254780300|r 106 IVIRHPYSGAVNS--LMHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHSR 171 (316)
Q Consensus 106 iv~R~~~~~~~~~--~a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~~ 171 (316)
+|+=.|+.+.... +++.+..| .-. .|-+-. -|+|.+=+.. ++.+ ...++|.+|+.|-| +..++
T Consensus 296 vVi~VPdSg~~aA~gya~~sgip-y~~gliKNrYvgRTFI-~P~q~~R~~~-vr~Kln~i~~~i~gK~vvlVDDSIVRGt 372 (503)
T PRK09246 296 VVIPIPDTSRDAALEIARILGVP-YREGFVKNRYVGRTFI-MPGQAQRKKS-VRQKLNAIRAEFKGKNVLLVDDSIVRGT 372 (503)
T ss_pred CEEECCCCCHHHHHHHHHHCCCC-HHEEEEECCCCCCCCC-CCCHHHHHHH-HHHCEECCHHHCCCCEEEEEECCEECCC
T ss_conf 25007997188999999971996-1201210365576776-9868899986-7652003643156976999845531164
Q ss_pred HHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 13344664201342---0553277532221
Q gi|254780300|r 172 VARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 172 v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+.+..+.++...|+ ++++++|+-..|-
T Consensus 373 T~k~Iv~~Lr~aGAkeVh~riasPpi~~Pc 402 (503)
T PRK09246 373 TSEQIVQMARDAGAKKVYFASAAPPVRYPN 402 (503)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 199999999975998899996799857877
No 133
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=55.06 E-value=13 Score=17.51 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHH
Q ss_conf 79998741367146520321005542001234211112345663122332222222012221000100103554433013
Q gi|254780300|r 94 TIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVA 173 (316)
Q Consensus 94 ta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~ 173 (316)
.|+-+-.-++|+|+-|-.....+. ++.++| ||.---+.+ |++-....... .+-+++.+| +.++.
T Consensus 24 ~a~~~~~~g~dvIIsRGgta~~ir---~~~~iP-Vv~I~~s~~--------Dil~al~~a~~-~~~kiavvg---~~~~~ 87 (169)
T pfam06506 24 VARALVAEGVDVIISRGGTAAYLR---DRLSVP-VVEIKVSGF--------DLLRALARARR-YGGRIGLVG---YENII 87 (169)
T ss_pred HHHHHHHCCCCEEEECCHHHHHHH---HHCCCC-EEEEECCHH--------HHHHHHHHHHH-HCCCEEEEE---CCCCC
T ss_conf 999999779959998965899999---858998-899827886--------99999999997-589799992---76303
Q ss_pred HHHHHHHHCCCCEEEECCCC
Q ss_conf 34466420134205532775
Q gi|254780300|r 174 RSDIMLLNTMGARIRVIAPI 193 (316)
Q Consensus 174 ~S~~~~~~~~g~~v~~~~P~ 193 (316)
...-.....+|.++.+....
T Consensus 88 ~~~~~~~~il~~~i~~~~~~ 107 (169)
T pfam06506 88 PGLKALSELLGLDIVQRAYQ 107 (169)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 68999999969935999966
No 134
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=54.34 E-value=9.6 Score=18.46 Aligned_cols=108 Identities=15% Similarity=0.235 Sum_probs=69.0
Q ss_pred HCCCCC--CCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCC-----CCCCCCC-CCCCCC----CCHHHCCC
Q ss_conf 012221--000100103554433013344664201342-0553277532-----2211212-343300----58456036
Q gi|254780300|r 150 RHFKGK--ISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITL-----LPKDISN-MGVEVF----HDMQKGLK 216 (316)
Q Consensus 150 ~e~~g~--l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~-----~~~~~~~-~~~~~~----~d~~ea~~ 216 (316)
...||+ |++.|+..+|= +-++.=.+..+...|+ ++.++ -..| +.+.+.+ ..+... +++++++.
T Consensus 175 ~~ifG~erL~~~~~LliGA---GeMg~Lva~~L~~~~v~~~~i~-NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~ 250 (436)
T TIGR01035 175 EKIFGSERLKGKKVLLIGA---GEMGELVAKHLREKGVGKVLIA-NRTYERAEKLAKELGGPEAVKFEALALEKLEEALA 250 (436)
T ss_pred HHHHCCCCCCCCEEEEEEC---CHHHHHHHHHHHHCCCCEEEEE-CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9872562116641899827---4579999999964895289885-56778999999870786645444554899999974
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCC--------CCCEEECCC--CCCCCCCCCHHHHCC
Q ss_conf 86221000113312333444455542023575889998379--------985995589--987687447679769
Q gi|254780300|r 217 NVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAK--------KDALVMHPG--PINRNYEISSSVADG 281 (316)
Q Consensus 217 ~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~--------~~ai~mHcL--P~~Rg~Ev~~~v~d~ 281 (316)
.+|+|+.-.-.. .|-|+.+.|+.+. ..-.||=.+ | |+ |+++|-+=
T Consensus 251 ~~DivissTgA~----------------~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvP--Rd--vd~~v~~L 305 (436)
T TIGR01035 251 EADIVISSTGAP----------------EPIVSKEDVERALKERRRDEAARPLFIVDIAVP--RD--VDPEVAKL 305 (436)
T ss_pred HCCEEEEECCCC----------------CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCC--CC--CCHHHHCC
T ss_conf 288999855765----------------310020348999997222001588699975889--98--63786222
No 135
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=54.09 E-value=12 Score=17.91 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHCCCCEEEECCC
Q ss_conf 9979876135211123333210133-342247999874136714652032
Q gi|254780300|r 64 FEVAGKLLGVHVININTKNSAMKKG-ENIADTIATLNALRPNIIVIRHPY 112 (316)
Q Consensus 64 Fe~A~~~LGg~~i~l~~~~s~~~kg-Es~~Dta~vls~~~~d~iv~R~~~ 112 (316)
-|.|.....|.++. .+.++..| |.+...+...-.|++.+|++--.+
T Consensus 83 iEaaLk~~~Gr~iI---NSis~e~g~er~~~i~pLakkyga~vI~L~~de 129 (252)
T cd00740 83 IEAGLKCCQGKCVV---NSINLEDGEERFLKVARLAKEHGAAVVVLAFDE 129 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99999976998677---416344548899999999987099899995289
No 136
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=52.89 E-value=12 Score=17.81 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
Q ss_conf 334466420134-205532775322211212343300584560368622100
Q gi|254780300|r 173 ARSDIMLLNTMG-ARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316)
Q Consensus 173 ~~S~~~~~~~~g-~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316)
++....-+.+-+ ..+.+.+|+.+ ++.++.|-.||+.+||+|++
T Consensus 102 vn~~akelpkppkgaihf~hped~--------g~~vttddreavedad~iit 145 (343)
T COG4074 102 VNDIAKELPKPPKGAIHFLHPEDM--------GIVVTTDDREAVEDADMIIT 145 (343)
T ss_pred HHHHHHHCCCCCCCEEEECCHHHC--------EEEEECCCHHHHCCCCEEEE
T ss_conf 999887479998550343377886--------13885372766457775999
No 137
>pfam03720 UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=52.74 E-value=17 Score=16.80 Aligned_cols=59 Identities=31% Similarity=0.390 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE-EEE
Q ss_conf 355443301334466420134205532775322211212343300584560368622100-011
Q gi|254780300|r 164 CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI-LRM 226 (316)
Q Consensus 164 vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~-~~~ 226 (316)
++|+++| .+-.++..+...|.++.+.-|-.- +. ...++....+++++++++|+|+. +.|
T Consensus 11 ~~D~R~S-~s~~l~~~L~~~g~~v~~~DP~v~--~~-~~~~~~~~~~~~~~~~~~D~iii~t~h 70 (99)
T pfam03720 11 TDDLRES-PALDIIEELLEEGAEVRVYDPYVP--EE-HEDGVTLVDDLEEALKGADAIVILTDH 70 (99)
T ss_pred CCCHHCC-CHHHHHHHHHHCCCEEEEECCCCC--HH-HHCCEEEECCHHHHHHCCCEEEEEECC
T ss_conf 9421058-589999999987998999999579--56-705345533588896268979997372
No 138
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=52.36 E-value=18 Score=16.69 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCCCEEEEC
Q ss_conf 1334466420134205532
Q gi|254780300|r 172 VARSDIMLLNTMGARIRVI 190 (316)
Q Consensus 172 v~~S~~~~~~~~g~~v~~~ 190 (316)
+.......+..+|..+.++
T Consensus 166 ~~~~~~~~~~~lgk~pV~v 184 (291)
T PRK06035 166 TFNTTVELSKKIGKIPIEV 184 (291)
T ss_pred HHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999759848996
No 139
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=51.60 E-value=18 Score=16.61 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=11.4
Q ss_pred HHCCCCCCEEEEEEECCHHHH
Q ss_conf 560368622100011331233
Q gi|254780300|r 212 QKGLKNVDVIMILRMQQERIP 232 (316)
Q Consensus 212 ~ea~~~aDvv~~~~~~~e~~~ 232 (316)
-..++.+|+++.-.-+-+...
T Consensus 257 ~ali~~a~l~I~nDSGpmHlA 277 (352)
T PRK10422 257 GALIDHAQLFIGVDSAPAHIA 277 (352)
T ss_pred HHHHHHCCEEEECCCHHHHHH
T ss_conf 999981787560598189999
No 140
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=50.72 E-value=17 Score=16.84 Aligned_cols=120 Identities=20% Similarity=0.318 Sum_probs=67.2
Q ss_pred CCEEEECCCCCHHHH--HHCCCCCCC----CCC--CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCC
Q ss_conf 714652032100554--200123421----111--2345663122332222222012----22100010010355-4433
Q gi|254780300|r 104 NIIVIRHPYSGAVNS--LMHKIKGPS----IIN--AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHS 170 (316)
Q Consensus 104 d~iv~R~~~~~~~~~--~a~~~s~pp----VIN--ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~ 170 (316)
| +|+=.|+.+.... +++.+..|- |=| .|-+-. -|+|.+-+.. ++.+ ...++|.+|+.|-| +..+
T Consensus 288 D-iVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI-~p~q~~R~~~-v~~Kln~~~~~i~gK~vvlVDDSIVRG 364 (480)
T PRK09123 288 D-VVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFI-QPTQQIRNLG-VKLKHNANRAVIEGKRVVLVDDSIVRG 364 (480)
T ss_pred C-EEEECCCCCHHHHHHHHHHCCCCHHHCEEECCCCCCCCC-CCCHHHHHHC-CEEEEEECCCCCCCCEEEEEECCCCCC
T ss_conf 5-277566764467898887639961122531242157743-8878777637-077564033345898299980661536
Q ss_pred CHHHHHHHHHHCCCC---EEEECCCCCCCCCC----CCCCC--CCCCCCHHHC--CCCCCEEEEEEE
Q ss_conf 013344664201342---05532775322211----21234--3300584560--368622100011
Q gi|254780300|r 171 RVARSDIMLLNTMGA---RIRVIAPITLLPKD----ISNMG--VEVFHDMQKG--LKNVDVIMILRM 226 (316)
Q Consensus 171 ~v~~S~~~~~~~~g~---~v~~~~P~~~~~~~----~~~~~--~~~~~d~~ea--~~~aDvv~~~~~ 226 (316)
++.+..+.++...|+ ++++++|+-..|-. ..... +--..+.+|. .-+||-+...++
T Consensus 365 tT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID~~~~~eLiA~~~s~eei~~~igaDsL~yls~ 431 (480)
T PRK09123 365 TTSRKIVQMLRDAGAKEVHLRIASPPTTHPCFYGIDTPERSKLLAATHSLEEMAEYIGADSLAFLSI 431 (480)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCEEEEECH
T ss_conf 7699999999977998899996899857876674368998998537999999998869976986569
No 141
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=50.65 E-value=18 Score=16.64 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=57.6
Q ss_pred EEEECCCCCHHHHH--HCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCCC
Q ss_conf 46520321005542--00123421111-------2345663122332222222012----22100010010355-44330
Q gi|254780300|r 106 IVIRHPYSGAVNSL--MHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHSR 171 (316)
Q Consensus 106 iv~R~~~~~~~~~~--a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~~ 171 (316)
+|+-.|+.+....+ |+.+..| .-. .|-+- =-|+|.+=+.. ++.+ +..++|.+|+.|-| +..++
T Consensus 286 vVi~VPdSg~~aA~gya~~~gip-~~~glikn~yvgRTF-I~p~q~~R~~~-v~~Kln~~~~~i~gK~vvlVDDSIVRGt 362 (471)
T PRK06781 286 VVTGVPDSSISAAIGYAEATGIP-YELGLIKNRYVGRTF-IQPSQELREQG-VKMKLSAVRGVVEGKRVVMIDDSIVRGT 362 (471)
T ss_pred EEEECCCCCHHHHHHHHHHHCCC-HHHCEEECCCCCCCC-CCCCHHHHHHH-HHHCCEECCCCCCCCEEEEECCCCCCCC
T ss_conf 89978987388999999980997-444301002014435-38758899876-5301104100048988999816605575
Q ss_pred HHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 13344664201342---0553277532221
Q gi|254780300|r 172 VARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 172 v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+.+..+.++...|+ ++++++|+-..|-
T Consensus 363 T~k~iv~~Lr~aGAkeVh~ri~sPpi~~Pc 392 (471)
T PRK06781 363 TSKRIVRMLREAGATEVHVRIASPPLKYPC 392 (471)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 699999999977998899996899857876
No 142
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=50.17 E-value=19 Score=16.47 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHCC----------CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCC
Q ss_conf 122332222222012----------2210001001035544330133446642013420553277532---221121234
Q gi|254780300|r 138 HPSQALLDAFAIRHF----------KGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL---LPKDISNMG 204 (316)
Q Consensus 138 HP~Q~LaDl~Ti~e~----------~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~---~~~~~~~~~ 204 (316)
-||-.++=+- |.++ .-+++|.+++.+|. .+-|-+-+..++..-|+.++.+.=... .........
T Consensus 33 iPCTP~gv~~-LL~~~~i~~~~~~yg~~l~Gk~vvVIGR--S~iVGkPla~LL~~~~ATVt~~d~~~~~~~~~~~~~~~~ 109 (197)
T cd01079 33 LPCTPLAIVK-ILEFLGIYNKILPYGNRLYGKTITIINR--SEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHE 109 (197)
T ss_pred CCCCHHHHHH-HHHHHCCCCCCCCCCCCCCCCEEEEECC--CCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCE
T ss_conf 7786999999-9997185543323577889998999898--731548899999738996775034421464046652212
Q ss_pred ----CCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC
Q ss_conf ----330058456036862210001133123334444555420235758899983799859955
Q gi|254780300|r 205 ----VEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316)
Q Consensus 205 ----~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316)
.....+..+.++.||+|+.. ++..+ |.|+.+++ |+.+++--
T Consensus 110 ~~~~~~~~~~~~~~~~~aDIvI~a-vg~p~---------------~~i~~~~v---k~GaivID 154 (197)
T cd01079 110 KHHVTDEEAMTLDCLSQSDVVITG-VPSPN---------------YKVPTELL---KDGAICIN 154 (197)
T ss_pred EEEECCCCHHHHHHCCCCCEEEEC-CCCCC---------------CCCCHHHC---CCCCEEEE
T ss_conf 456414210056542347999988-78776---------------65667554---48968998
No 143
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=49.95 E-value=19 Score=16.49 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=74.7
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC----CC-CCCCCC-------CCCCHHHCCCCCCE
Q ss_conf 2210001001035544330133446642013420553277532221----12-123433-------00584560368622
Q gi|254780300|r 153 KGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPK----DI-SNMGVE-------VFHDMQKGLKNVDV 220 (316)
Q Consensus 153 ~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~----~~-~~~~~~-------~~~d~~ea~~~aDv 220 (316)
..+++|.+++.+|- .+-|..--..+++.-|.++++++...-..+ .+ ...+.. ...+..+++.++|+
T Consensus 23 g~dl~g~~~~V~G~--tG~vG~~~A~~lA~~Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adi 100 (194)
T cd01078 23 GKDLKGKTAVVLGG--TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADV 100 (194)
T ss_pred CCCCCCCEEEEECC--CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCE
T ss_conf 99867988999858--8578999999999839979999587888999999999970987311357887789977466989
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCE---EECCCCCC-CCCCCCHHHHCCCCCHHHHHHHH---H
Q ss_conf 10001133123334444555420235758899983799859---95589987-68744767976997016868775---6
Q gi|254780300|r 221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDAL---VMHPGPIN-RNYEISSSVADGSQSIIQYQVEM---G 293 (316)
Q Consensus 221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai---~mHcLP~~-Rg~Ev~~~v~d~~~s~v~~Qa~N---r 293 (316)
|+...--- -|+-.+....+++-.+ +--+.|+- +|.|+.+++..-+-...|---.. .
T Consensus 101 V~~a~aAG-----------------v~~~~~~~~~~k~l~Vv~DVNAvPP~Gi~Gv~~~D~~~~i~G~~~~Gal~iG~~K 163 (194)
T cd01078 101 VFAAGAAG-----------------VELLEKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPYGAIGVGGLK 163 (194)
T ss_pred EEECCHHH-----------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCHHH
T ss_conf 99642777-----------------8887888850888659986589998550110336673450797256431124216
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999999999997781422
Q gi|254780300|r 294 VAVRMAIIKELLENQNKI 311 (316)
Q Consensus 294 l~~~~AlL~~~l~~~~~~ 311 (316)
+-++.+.+..++..++++
T Consensus 164 ~k~~~~~~~~m~~s~~~~ 181 (194)
T cd01078 164 MKTHRACIAKLFESNPLV 181 (194)
T ss_pred HHHHHHHHHHHHCCCCEE
T ss_conf 999999999996379807
No 144
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=49.93 E-value=15 Score=17.24 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=59.5
Q ss_pred CCCEEEECCCCCHHHH--HHCCCCCC---CCC-C--CCCCCCCCHHHHHHHHHHHHCCC----CCCCCCCEEECCC-CCC
Q ss_conf 6714652032100554--20012342---111-1--23456631223322222220122----2100010010355-443
Q gi|254780300|r 103 PNIIVIRHPYSGAVNS--LMHKIKGP---SII-N--AGDGTHEHPSQALLDAFAIRHFK----GKISNLHIAICGD-ILH 169 (316)
Q Consensus 103 ~d~iv~R~~~~~~~~~--~a~~~s~p---pVI-N--ag~~~~~HP~Q~LaDl~Ti~e~~----g~l~~l~ia~vGD-~~~ 169 (316)
+|+ |+-.|+.+.... +|+.+.+| .+| | .|-+- =-|+|.+=++- ++.++ ..++|.+|.+|-| +..
T Consensus 308 ~Di-Vi~VPdSg~~aA~gya~~sgipy~~glikn~YvgRTF-I~p~q~~R~~~-vr~Kln~~~~~i~gK~vvlvDDSIVR 384 (495)
T PRK07349 308 ADL-VIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTF-IQPTQAMRESG-IRMKLNPLKDVLAGKRIIIVDDSIVR 384 (495)
T ss_pred CCE-EEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC-CCCCHHHHHHC-CCEEEEECHHHHCCCEEEEECCCCCC
T ss_conf 863-8978996299999999973997122012045446555-18758887632-01320136788589859998266055
Q ss_pred CCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 3013344664201342---0553277532221
Q gi|254780300|r 170 SRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 170 ~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+++.+..+.++...|+ ++++++|+-..|-
T Consensus 385 GtT~k~iv~~Lr~aGAkeVh~riasPpi~~pC 416 (495)
T PRK07349 385 GTTSRKIVKALRDAGATEVHMRISSPPVTHPC 416 (495)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 74699999999976998899996899857777
No 145
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=49.90 E-value=20 Score=16.44 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 128976999960787337899997987613521112333321
Q gi|254780300|r 43 RLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA 84 (316)
Q Consensus 43 ~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~ 84 (316)
..+|++++.+=--.=-| =+..|+.+||..++.++++..+
T Consensus 4 ~~p~~tIGIlGgGQLgr---Mla~aA~~lG~~v~vldp~~~~ 42 (377)
T PRK06019 4 ILPGKTIGIIGGGQLGR---MLALAAAPLGYKVIVLDPDADC 42 (377)
T ss_pred CCCCCEEEEECCCHHHH---HHHHHHHHCCCEEEEECCCCCC
T ss_conf 89999999987868999---9999999789989998489849
No 146
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.28 E-value=20 Score=16.38 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=7.7
Q ss_pred HHHCCHHHHHHHHHHHH
Q ss_conf 22389999999999999
Q gi|254780300|r 12 VKDLSMQDVNYLLDRAN 28 (316)
Q Consensus 12 ~~dl~~~el~~ll~~A~ 28 (316)
+-|.+.+.++.-.+...
T Consensus 31 l~D~~~~~l~~a~~~i~ 47 (503)
T PRK08268 31 LYDARAGAAAAARDGIA 47 (503)
T ss_pred EEECCHHHHHHHHHHHH
T ss_conf 99799899999999999
No 147
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=49.14 E-value=15 Score=17.23 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 221000100103554433013344664201342055327753
Q gi|254780300|r 153 KGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 153 ~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
+-+++|.+++.+| ++.|+.--+.++...|.++++++|+-
T Consensus 7 ~~~l~~k~VlvvG---gG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 7 FLDLEGKKVLVVG---GGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EEECCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9981997799989---98999999999974699799987874
No 148
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=49.02 E-value=20 Score=16.35 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECC--CCC----------C----CCCCCCCC-C-CCC-CCC----
Q ss_conf 21000100103554433013344664201342055327--753----------2----22112123-4-330-058----
Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIA--PIT----------L----LPKDISNM-G-VEV-FHD---- 210 (316)
Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~--P~~----------~----~~~~~~~~-~-~~~-~~d---- 210 (316)
|.+..-|+..+|- +-..-.-+..+..+|+.|+..- |.. + ..++..+. + .++ +.+
T Consensus 161 G~VpPAkVlViGa---GVAGlqAi~tA~~LGA~V~a~DvR~~~~EqveSlGa~fv~v~~~e~~~~~gGYAk~~s~e~~~~ 237 (510)
T PRK09424 161 GKVPPAKVLVIGA---GVAGLAAIGAAGSLGAIVRAFDTRPEVKEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (510)
T ss_pred CCCCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 7778852899746---4777999999962797899965878899999970674255210102445785035456789999
Q ss_pred ----HHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC
Q ss_conf ----4560368622100011331233344445554202357588999837998599558998768
Q gi|254780300|r 211 ----MQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRN 271 (316)
Q Consensus 211 ----~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg 271 (316)
..+.++++|+|+++-..-- .+ .+--||+++++.+||.+++-- |-+..|
T Consensus 238 q~~~~~e~~~~aDiVItTalIPG----~~--------AP~LIt~emV~~MKpGSVIVD-lAadqG 289 (510)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPG----KP--------APKLITKEMVDSMKPGSVIVD-LAAANG 289 (510)
T ss_pred HHHHHHHHHHHCCEEEEEEECCC----CC--------CCEECCHHHHHHCCCCCEEEE-ECCCCC
T ss_conf 99999999742477998654189----98--------997037999952699978999-525579
No 149
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=48.96 E-value=20 Score=16.35 Aligned_cols=13 Identities=23% Similarity=0.550 Sum_probs=5.3
Q ss_pred CHHHCCCCCCEEE
Q ss_conf 8456036862210
Q gi|254780300|r 210 DMQKGLKNVDVIM 222 (316)
Q Consensus 210 d~~ea~~~aDvv~ 222 (316)
+.+++++++|+|+
T Consensus 381 ~~e~al~~~D~vV 393 (436)
T COG0677 381 ILEEALKDADAVV 393 (436)
T ss_pred HHHHHHCCCCEEE
T ss_conf 4798854488899
No 150
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=48.86 E-value=16 Score=16.96 Aligned_cols=92 Identities=26% Similarity=0.359 Sum_probs=57.8
Q ss_pred CCCEEEECCCCCHHHH--HHCCCCCCCCC-----CC--CCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CC
Q ss_conf 6714652032100554--20012342111-----12--345663122332222222012----22100010010355-44
Q gi|254780300|r 103 PNIIVIRHPYSGAVNS--LMHKIKGPSII-----NA--GDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-IL 168 (316)
Q Consensus 103 ~d~iv~R~~~~~~~~~--~a~~~s~ppVI-----Na--g~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~ 168 (316)
+| +|+-.|+.+.... +++.+..| .- |- |-+- =-|+|.+=+.- ++-+ +..++|.+|++|-| +.
T Consensus 278 ~D-~Vi~VPdSg~~aA~gyA~~sgip-~~~gliKn~yvgRTF-I~p~q~~R~~~-v~~Kln~i~~~i~gK~vvlVDDSIV 353 (489)
T PRK07847 278 AD-LVIPVPESGTPAAVGYAQESGIP-FGQGLVKNAYVGRTF-IQPSQTIRQLG-IRLKLNPLREVIRGKRLVVVDDSIV 353 (489)
T ss_pred CC-EEEECCCCHHHHHHHHHHHCCCC-HHHCEEECCCCCCCE-ECCCHHHHHHC-CCEEEECCHHEECCCEEEEECCCCC
T ss_conf 99-79856997199999999973995-444200146147401-37866566636-5147740264177987999847835
Q ss_pred CCCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 33013344664201342---0553277532221
Q gi|254780300|r 169 HSRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 169 ~~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
.+++.++.+.++...|+ ++++++|+-..|-
T Consensus 354 RGtT~k~iv~~Lr~aGAkeVh~riasPpi~~PC 386 (489)
T PRK07847 354 RGNTQRALVRMLREAGAAEVHVRIASPPVKWPC 386 (489)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 667799999999976998899996899857887
No 151
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=48.74 E-value=19 Score=16.49 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=42.6
Q ss_pred CCCCCCEEECCCCCCCCHHHH-HHHHHHCCCCEEEECCCCC-----CCCC----------CCCCCCCCCCCCHH------
Q ss_conf 100010010355443301334-4664201342055327753-----2221----------12123433005845------
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARS-DIMLLNTMGARIRVIAPIT-----LLPK----------DISNMGVEVFHDMQ------ 212 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S-~~~~~~~~g~~v~~~~P~~-----~~~~----------~~~~~~~~~~~d~~------ 212 (316)
--+|++++++|. .||..| ++.++ ++-+..++++.. +... -...+|++.+.|.=
T Consensus 214 lr~G~kvvIiG~---PNvGKSSLLNaL--~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 214 LREGLKVVIIGR---PNVGKSSLLNAL--LGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred HHCCCEEEEECC---CCCCHHHHHHHH--HCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 645864999879---988679999988--667866742899974103789999898899998567766673489999999
Q ss_pred ---HCCCCCCEEEE
Q ss_conf ---60368622100
Q gi|254780300|r 213 ---KGLKNVDVIMI 223 (316)
Q Consensus 213 ---ea~~~aDvv~~ 223 (316)
+++++||.|.+
T Consensus 289 Rs~~~i~~ADlvL~ 302 (454)
T COG0486 289 RAKKAIEEADLVLF 302 (454)
T ss_pred HHHHHHHHCCEEEE
T ss_conf 99999985998999
No 152
>KOG0069 consensus
Probab=48.74 E-value=20 Score=16.33 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=54.7
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH
Q ss_conf 21000100103554433013344664201342055327753222112123433005845603686221000113312333
Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316)
Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316)
.++.|.+|.++|= +++......-+..||+.+....=....++....... ...|.++-+.++|+|+.-.--
T Consensus 158 ~~~~gK~vgilG~---G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-~~~d~~~~~~~sD~ivv~~pL------ 227 (336)
T KOG0069 158 YDLEGKTVGILGL---GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-EFVDIEELLANSDVIVVNCPL------ 227 (336)
T ss_pred CCCCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC-CCCCHHHHHHHCCEEEEECCC------
T ss_conf 6656777999627---478899999635326625541135776366887435-436788887328879992689------
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
Q ss_conf 44445554202357588999837998599558
Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316)
Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316)
-++.. --+|.+.++++|+.+++-.+
T Consensus 228 -----t~~T~--~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069 228 -----TKETR--HLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred -----CHHHH--HHHHHHHHHHCCCCEEEEEC
T ss_conf -----77888--77609999864797699964
No 153
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.35 E-value=21 Score=16.29 Aligned_cols=15 Identities=7% Similarity=-0.232 Sum_probs=6.6
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 976997016868775
Q gi|254780300|r 278 VADGSQSIIQYQVEM 292 (316)
Q Consensus 278 v~d~~~s~v~~Qa~N 292 (316)
|+-+|-|.-|+|=.|
T Consensus 447 VLlSPacaSfD~f~n 461 (481)
T PRK01438 447 VLLAPACASMDMFTN 461 (481)
T ss_pred EEECCHHHCCCCCCC
T ss_conf 998950002022069
No 154
>PRK11579 putative oxidoreductase; Provisional
Probab=47.79 E-value=21 Score=16.23 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=28.4
Q ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1289769999607873378999979876135211123333210133342247999
Q gi|254780300|r 43 RLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIAT 97 (316)
Q Consensus 43 ~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~v 97 (316)
.|....+=.+.--..+.+......++.+-|-|++.=-|=..++...+.+.+.++-
T Consensus 59 ll~~~~id~V~i~tp~~~H~~~~~~al~aGkhv~~EKP~a~~~~~a~~l~~~a~~ 113 (346)
T PRK11579 59 LFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKS 113 (346)
T ss_pred HHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 9459999999997996789999999998799489538767879999999999987
No 155
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=47.50 E-value=21 Score=16.20 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC--------CCCCC
Q ss_conf 3789999798761352111233332101-33342247999874136714652032100554200123--------42111
Q gi|254780300|r 59 RTQTSFEVAGKLLGVHVININTKNSAMK-KGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK--------GPSII 129 (316)
Q Consensus 59 RTR~SFe~A~~~LGg~~i~l~~~~s~~~-kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s--------~ppVI 129 (316)
+.-.=+..+...||....|.--+..... ..|.+.+....+...+...+-+--|+...+..+....+ +--|+
T Consensus 19 lSP~iHn~~~~~lgl~~~Y~~~d~~~~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~~~~~~d~l~~~A~~igAvNTi~ 98 (284)
T PRK12549 19 LTPAMHEAEGDAQGLRYVYRLIDLDALGLSADALPELLDAAERMGFNGLNITHPCKQAVIPLLDELSDDARALGAVNTVV 98 (284)
T ss_pred CCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 25999999999879980999753212139978999999998768998899811749999999705237899856521489
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCC--CCC--CCCC----C
Q ss_conf 12345663122332222222012221000100103554433013344664201342-0553277--532--2211----2
Q gi|254780300|r 130 NAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAP--ITL--LPKD----I 200 (316)
Q Consensus 130 Nag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P--~~~--~~~~----~ 200 (316)
+-......|-|-...=+..+.+....+.+.++..+|- +-.+++.+.++...|+ ++.++.- ... +.+. .
T Consensus 99 ~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~vlilGa---GGaa~ai~~al~~~g~~~i~I~nR~~~r~~~l~~~l~~~~ 175 (284)
T PRK12549 99 FRDGRRIGHNTDWSGFAEGFRRGLPDASLERVVQLGA---GGAGAAVAHALLTLGVERLTLFDVDPARAQALADELNARF 175 (284)
T ss_pred EECCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECC---CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 7599899980666889999997464535571899656---6168999999997699989999798899999999998657
Q ss_pred CCCCCCCCCCHHHCCCCCCEEE-EEEEC
Q ss_conf 1234330058456036862210-00113
Q gi|254780300|r 201 SNMGVEVFHDMQKGLKNVDVIM-ILRMQ 227 (316)
Q Consensus 201 ~~~~~~~~~d~~ea~~~aDvv~-~~~~~ 227 (316)
....+....++.+.+.++|+|+ +++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~d~iINaTp~G 203 (284)
T PRK12549 176 PAARVTAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CCCEEEECHHHHHHHHHCCEEEECCCCC
T ss_conf 9863764167676542138266578988
No 156
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=47.03 E-value=14 Score=17.42 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=12.7
Q ss_pred CCCCCCHHHHCCCCCHHHHHH
Q ss_conf 687447679769970168687
Q gi|254780300|r 270 RNYEISSSVADGSQSIIQYQV 290 (316)
Q Consensus 270 Rg~Ev~~~v~d~~~s~v~~Qa 290 (316)
.|--.+-||+=.-+|+|.+||
T Consensus 261 ~Gt~~SYD~FVaQrSHivQQa 281 (772)
T TIGR00993 261 NGTPLSYDVFVAQRSHIVQQA 281 (772)
T ss_pred CCCCCCEEEEEECCCHHHHHH
T ss_conf 888420000110010232332
No 157
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=46.84 E-value=22 Score=16.14 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=67.3
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCC---CCCCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 2012221000100103554433013344664201342-05532775322211---2123433005845603686221000
Q gi|254780300|r 149 IRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKD---ISNMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 149 i~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~---~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
..+.+|++++.++..+|- +-+....+..+...|+ +++++....-..+. .-+....-+.++.+.+.++|+|++.
T Consensus 169 a~~~~~~l~~~~vLviGa---Gem~~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~g~~~~~~~~l~~~l~~~Dvvisa 245 (311)
T cd05213 169 AEKIFGNLKGKKVLVIGA---GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISA 245 (311)
T ss_pred HHHHHCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHHCCEEEEE
T ss_conf 998718721167999868---79999999999965998259976867899999997498997299999999768999992
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCHHHH-HHC--CCCCEEECCCCCCCCCCCCHHHHCCCCCHHH
Q ss_conf 11331233344445554202357588999-837--9985995589987687447679769970168
Q gi|254780300|r 225 RMQQERIPRSLIPSIREYKHVYSLDEKKL-KYA--KKDALVMHPGPINRNYEISSSVADGSQSIIQ 287 (316)
Q Consensus 225 ~~~~e~~~~~~~~~~~~~~~~~~v~~~~l-~~a--~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~ 287 (316)
.-... +.++.+.+ +.. +|-.++==++| |+ |+++|-+-|.-.++
T Consensus 246 T~s~~----------------~~~~~~~~~~~~~~~~~~iiDLavP--Rd--id~~v~~l~~v~L~ 291 (311)
T cd05213 246 TGAPH----------------YAKIVERAMKKRSGKPRLIVDLAVP--RD--IEPEVGELEGVRLY 291 (311)
T ss_pred CCCCC----------------CHHHHHHHHHHCCCCCEEEEEECCC--CC--CCHHHCCCCCEEEE
T ss_conf 79996----------------2035999975347997699991799--98--77334776997998
No 158
>PRK06823 ornithine cyclodeaminase; Validated
Probab=46.69 E-value=22 Score=16.12 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=55.2
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHH-CCCC-EEEECCCCCC----CCCCC--CCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 010010355443301334466420-1342-0553277532----22112--12343300584560368622100011331
Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLN-TMGA-RIRVIAPITL----LPKDI--SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~-~~g~-~v~~~~P~~~----~~~~~--~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
-.+++++|- +..++..+.++. .++. ++.+..+..- +.+.. .+..++...++++++.+||+|++..-..+
T Consensus 128 a~~l~iiGt---G~QA~~~l~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~~ADIIvtaT~s~~ 204 (315)
T PRK06823 128 VKAIGIVGT---GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred CCEEEEECC---HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEEECCCC
T ss_conf 856999771---89999999999871871099994699799999999998619907994899999742774798878999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCC-CCCCCCHHHHCCCCCH
Q ss_conf 2333444455542023575889998379985995589987-6874476797699701
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPIN-RNYEISSSVADGSQSI 285 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~-Rg~Ev~~~v~d~~~s~ 285 (316)
-. +..+ ..+|++-+..-..-. .-.|++++++..-.-+
T Consensus 205 Pv----------------~~~~---~lkpG~hi~~iGs~~p~~~Eld~~~l~~a~~v 242 (315)
T PRK06823 205 PL----------------LQAE---DIQPGTHITAVGADSPGKQELDAELVARADKI 242 (315)
T ss_pred CC----------------CCCC---CCCCCCEEEECCCCCCCCCCCCHHHHHCCCEE
T ss_conf 64----------------1655---57899679842799941100499999149899
No 159
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=46.29 E-value=22 Score=16.15 Aligned_cols=92 Identities=24% Similarity=0.344 Sum_probs=56.4
Q ss_pred CCEEEECCCCCHHHH--HHCCCCCCC----CCC--CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCC
Q ss_conf 714652032100554--200123421----111--2345663122332222222012----22100010010355-4433
Q gi|254780300|r 104 NIIVIRHPYSGAVNS--LMHKIKGPS----IIN--AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHS 170 (316)
Q Consensus 104 d~iv~R~~~~~~~~~--~a~~~s~pp----VIN--ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~ 170 (316)
|+ |+=.|+.+.... +++.+..|= |=| .|-+- =-|+|.+-+.. ++.+ ...++|.+|+.|-| +..+
T Consensus 287 Dv-Vi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTF-I~p~q~~R~~~-v~~Kln~~~~~i~gK~vvlVDDSIVRG 363 (484)
T PRK07272 287 DI-VIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTF-IQPTQELREQG-VRMKLSAVSGVVKGKRVVMVDDSIVRG 363 (484)
T ss_pred CC-CCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCC-CCCCHHHHHHH-HHHHCCCCHHHHCCCEEEEEECCCCCC
T ss_conf 72-5007885389999999872995110514503113457-89967888873-634010254553797599982541126
Q ss_pred CHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 013344664201342---0553277532221
Q gi|254780300|r 171 RVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 171 ~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
++.+..+.++...|+ ++++++|+-..|-
T Consensus 364 tT~k~iv~~Lr~aGAkeVh~rissPpi~~pc 394 (484)
T PRK07272 364 TTSRRIVKLLKEAGAKEVHVRIASPELKYPC 394 (484)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 7599999999977998899996899857875
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=45.74 E-value=23 Score=16.03 Aligned_cols=64 Identities=20% Similarity=0.436 Sum_probs=41.7
Q ss_pred CCCCCEEECCCCCCCCHHHH-HHHHHHCCCCEEEECCCCC-----CCC----------CCCCCCCCCCCCCHH-------
Q ss_conf 00010010355443301334-4664201342055327753-----222----------112123433005845-------
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARS-DIMLLNTMGARIRVIAPIT-----LLP----------KDISNMGVEVFHDMQ------- 212 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S-~~~~~~~~g~~v~~~~P~~-----~~~----------~~~~~~~~~~~~d~~------- 212 (316)
-+|.+|+++|. -||..| ++.++ .|-+..+++|.. +.. .-...+|++.+.|.=
T Consensus 214 ~~G~~v~i~G~---PN~GKSSL~N~L--~~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~r 288 (445)
T PRK05291 214 REGLKVVIAGR---PNVGKSSLLNAL--LGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIER 288 (445)
T ss_pred HCCCEEEEECC---CCCCHHHHHHHH--HCCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 35986998899---987689999998--5787467318999740402236899998999998997665574588999999
Q ss_pred --HCCCCCCEEEEE
Q ss_conf --603686221000
Q gi|254780300|r 213 --KGLKNVDVIMIL 224 (316)
Q Consensus 213 --ea~~~aDvv~~~ 224 (316)
+.++.||+|.+.
T Consensus 289 a~~~~~~ADlil~v 302 (445)
T PRK05291 289 SRKAIEEADLVLLV 302 (445)
T ss_pred HHHHHHHCCEEEEE
T ss_conf 99999839999999
No 161
>PRK08291 ornithine cyclodeaminase; Validated
Probab=45.73 E-value=21 Score=16.25 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCC-CC-EEEECCCCCC----CCCCC---CCCCCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 001001035544330133446642013-42-0553277532----22112---123433005845603686221000113
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNTM-GA-RIRVIAPITL----LPKDI---SNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~~-g~-~v~~~~P~~~----~~~~~---~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
+-.+++++|- +.-+++.+.++... +. ++.+..+..- +.++. .+..+....++++++.++|+|++..-.
T Consensus 131 da~~l~iiG~---G~QA~~~l~Al~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~g~~v~~~~~~~~av~~aDIIvtaT~s 207 (330)
T PRK08291 131 DASRVAVFGA---GEQARLQLEALTLVRDIREVRVWARDAAKAEAFAAELRAALGIPVTVARDVHAALAGADIVVTTTPS 207 (330)
T ss_pred CCCEEEEECC---HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEEECC
T ss_conf 9856999876---4889999999997389768999838989999999999897699669929999997228889997689
No 162
>KOG0953 consensus
Probab=45.19 E-value=12 Score=17.76 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=6.3
Q ss_pred EEECCCCHHHHHHHH
Q ss_conf 960787337899997
Q gi|254780300|r 52 LFLETSTRTQTSFEV 66 (316)
Q Consensus 52 lF~kpStRTR~SFe~ 66 (316)
++.+.+-++-.||-.
T Consensus 105 ~~~~~~~~~~~sf~~ 119 (700)
T KOG0953 105 FDLPLFPAAFISFRI 119 (700)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 014110556678998
No 163
>PRK06141 ornithine cyclodeaminase; Validated
Probab=45.05 E-value=19 Score=16.46 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCEEECCCCCCCCHHHHHHHHHH-CCCC-EEEECCCCCC----CCCCC--CCCCCCCCCCHHHCCCCCCEEEEEEECCHH
Q ss_conf 10010355443301334466420-1342-0553277532----22112--123433005845603686221000113312
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLN-TMGA-RIRVIAPITL----LPKDI--SNMGVEVFHDMQKGLKNVDVIMILRMQQER 230 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~-~~g~-~v~~~~P~~~----~~~~~--~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~ 230 (316)
.+++++|- +.-+++.++++. .++. ++.+..+..- +.+.. .+..++.+.++++++.++|+|++..-..+-
T Consensus 126 ~~l~iiG~---G~QA~~~l~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~av~~aDII~taT~s~~P 202 (313)
T PRK06141 126 RRLLVVGT---GRLASLLALAHASVRPIKQVRVWGRNPAKAAALAAELREQGFDAEVVTDLEAAVRQADIISCATLSTEP 202 (313)
T ss_pred CEEEEECC---HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEECCCCCCC
T ss_conf 67999778---899999999999728975899993898999999999985099759958999986108779971688986
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC---CCCCCCCCCCCHHHHCCCCCHHHH
Q ss_conf 3334444555420235758899983799859955---899876874476797699701686
Q gi|254780300|r 231 IPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMH---PGPINRNYEISSSVADGSQSIIQY 288 (316)
Q Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH---cLP~~Rg~Ev~~~v~d~~~s~v~~ 288 (316)
. ++.+++ ++++.+-- +-|-. .|++++++..-. ++.+
T Consensus 203 v----------------~~~~~l---~~G~hI~avGs~~p~~--~El~~~~~~~a~-v~vD 241 (313)
T PRK06141 203 L----------------VRGEWL---RPGTHLDLVGSFTPDM--RECDDAAIARAS-VYVD 241 (313)
T ss_pred C----------------CCCCCC---CCCCEEEEECCCCCCC--EECCHHHHCCCE-EEEE
T ss_conf 4----------------464446---7872697635899875--545977860773-9991
No 164
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=45.03 E-value=22 Score=16.12 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=48.5
Q ss_pred HHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCC----CCCCCCCCC-CCCCCCHHHCCCCCCE
Q ss_conf 222012221000100103554433013344664201342-0553277532----221121234-3300584560368622
Q gi|254780300|r 147 FAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITL----LPKDISNMG-VEVFHDMQKGLKNVDV 220 (316)
Q Consensus 147 ~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~----~~~~~~~~~-~~~~~d~~ea~~~aDv 220 (316)
.++++...++++.++..+|- +-+++|.+.++..+|+ ++.++....- +.+...... .....+..+...+.|+
T Consensus 8 ~~l~~~~~~~~~k~vlIlGa---GGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~dl 84 (155)
T cd01065 8 RALEEAGIELKGKKVLILGA---GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADL 84 (155)
T ss_pred HHHHHCCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCE
T ss_conf 99997299857999999867---589999999999719982288608999999999985013664010453443156887
Q ss_pred EE-EEEEC
Q ss_conf 10-00113
Q gi|254780300|r 221 IM-ILRMQ 227 (316)
Q Consensus 221 v~-~~~~~ 227 (316)
|+ +++.+
T Consensus 85 iIN~tp~G 92 (155)
T cd01065 85 IINTTPVG 92 (155)
T ss_pred EEECCCCC
T ss_conf 98767787
No 165
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=44.82 E-value=19 Score=16.49 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=8.6
Q ss_pred CCCEEEECCCCCHH
Q ss_conf 67146520321005
Q gi|254780300|r 103 PNIIVIRHPYSGAV 116 (316)
Q Consensus 103 ~d~iv~R~~~~~~~ 116 (316)
+|++++-+|-....
T Consensus 59 aDliila~Pv~~~~ 72 (280)
T PRK07417 59 CDLVILALPIGLLL 72 (280)
T ss_pred CCEEEECCCHHHHH
T ss_conf 99899879747789
No 166
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=44.75 E-value=23 Score=15.93 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=83.6
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEC-CCCCHHHHHHCCCCCCCCCCCCCCCCCC-HHH--
Q ss_conf 798761352111233332101333422479998741367146520-3210055420012342111123456631-223--
Q gi|254780300|r 66 VAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRH-PYSGAVNSLMHKIKGPSIINAGDGTHEH-PSQ-- 141 (316)
Q Consensus 66 ~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~-~~~~~~~~~a~~~s~ppVINag~~~~~H-P~Q-- 141 (316)
..+.+-|-.++.++..+. .. +.+..+...+.....++-++=- .....+..-+...-.|.|+|..+ ++.. =-|
T Consensus 19 ~~~~~sgtDai~VGGS~~-~~--~~~~~~v~~ik~~~~~~PvilfPg~~~~is~~aDa~lf~sllNs~n-~~~lig~~~~ 94 (219)
T cd02812 19 KLAEESGTDAIMVGGSDG-VS--STLDNVVRLIKRIRRPVPVILFPSNPEAVSPGADAYLFPSVLNSGD-PYWIIGAQAE 94 (219)
T ss_pred HHHHHHCCCEEEECCCCC-CH--HHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCEEEEEEEECCCC-CHHHHHHHHH
T ss_conf 999976999999937557-44--7799999999973789998995798665686778688687533899-2367788999
Q ss_pred HHHHHHHH---HCCC--C--CC-CCCCEEECCCCCC---CCHHHHHHHHHHCCCCEEEECCCCC-CCCC-----------
Q ss_conf 32222222---0122--2--10-0010010355443---3013344664201342055327753-2221-----------
Q gi|254780300|r 142 ALLDAFAI---RHFK--G--KI-SNLHIAICGDILH---SRVARSDIMLLNTMGARIRVIAPIT-LLPK----------- 198 (316)
Q Consensus 142 ~LaDl~Ti---~e~~--g--~l-~~l~ia~vGD~~~---~~v~~S~~~~~~~~g~~v~~~~P~~-~~~~----------- 198 (316)
+..-+.-+ .|.. | -+ .|-++++++.... ...+.+...++..+|+++....-.+ +-|.
T Consensus 95 aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg~~~iYLEgSGa~v~~e~V~~vk~~l~ 174 (219)
T cd02812 95 AAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLG 174 (219)
T ss_pred HHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 99987431676322005789987998148882464799989999999999982993899956899799999999998467
Q ss_pred ---CCCCCCCCCCCCHHHCCC-CCCEEEEEEECCHH
Q ss_conf ---121234330058456036-86221000113312
Q gi|254780300|r 199 ---DISNMGVEVFHDMQKGLK-NVDVIMILRMQQER 230 (316)
Q Consensus 199 ---~~~~~~~~~~~d~~ea~~-~aDvv~~~~~~~e~ 230 (316)
-+-++|++-.+...++++ +||+|++-..-.+.
T Consensus 175 ~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~iee~ 210 (219)
T cd02812 175 DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEEEC
T ss_conf 970999289799999999998699999988722406
No 167
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=43.29 E-value=18 Score=16.67 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=29.0
Q ss_pred CCCCHH-HHHHCCCCCEEECCCCCCCCCCC-CHHHHCCCCCHHHHH
Q ss_conf 575889-99837998599558998768744-767976997016868
Q gi|254780300|r 246 YSLDEK-KLKYAKKDALVMHPGPINRNYEI-SSSVADGSQSIIQYQ 289 (316)
Q Consensus 246 ~~v~~~-~l~~a~~~ai~mHcLP~~Rg~Ev-~~~v~d~~~s~v~~Q 289 (316)
-+|..| ++++++..+|+|+|+|+.-..-- =+|.+|.-=+++.+|
T Consensus 125 ~SiHLENmL~L~~~G~IIlPP~PaFY~rPkS~~Dl~~~~VgR~LD~ 170 (181)
T TIGR00421 125 NSIHLENMLRLSRMGAIILPPVPAFYNRPKSVEDLIDFIVGRVLDQ 170 (181)
T ss_pred CHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 5154899999982792532795544478988788986779877776
No 168
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=42.97 E-value=25 Score=15.76 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999874136714652
Q gi|254780300|r 95 IATLNALRPNIIVIR 109 (316)
Q Consensus 95 a~vls~~~~d~iv~R 109 (316)
...+..+.+|++++-
T Consensus 72 ~~~l~~~~~Dliv~~ 86 (181)
T pfam00551 72 ADSLAALAPDLIVLA 86 (181)
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999997499999980
No 169
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=42.03 E-value=8.7 Score=18.73 Aligned_cols=122 Identities=11% Similarity=0.149 Sum_probs=62.6
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHH----------HCCCCC---CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 17822389999999999999999644----------204877---52128976999960787337899997987613521
Q gi|254780300|r 9 FVTVKDLSMQDVNYLLDRANEYFQKK----------SHFNPS---TTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHV 75 (316)
Q Consensus 9 fL~~~dl~~~el~~ll~~A~~~k~~~----------~~~~~~---~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~ 75 (316)
+++--.|+++-|..+.+--.+....+ ...+-. ....+=-+++++|+----=|=-.+..+.. -|++
T Consensus 65 m~DRL~L~~~Ri~~ma~gl~~Va~L~DPvGev~~~~~~~nGL~i~~~rvPLGVigvIYEsRPnVtvdaaaLclK--sGNA 142 (417)
T COG0014 65 MLDRLALTPSRIEAMADGLRQVAALPDPVGEVIDGWTLPNGLQIYRVRVPLGVIGVIYESRPNVTVDAAALCLK--SGNA 142 (417)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHH--CCCE
T ss_conf 88887189999999999999984289934766333508998778998726358999981698428999999986--2887
Q ss_pred CCCCCCC--------------------------CCC---CCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCC
Q ss_conf 1123333--------------------------210---13334224799987413671465203210055420012342
Q gi|254780300|r 76 ININTKN--------------------------SAM---KKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGP 126 (316)
Q Consensus 76 i~l~~~~--------------------------s~~---~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~p 126 (316)
+.|...+ .|+ -.+|++.+-.+ +..| .|+++-|-. .+.+....+.+++|
T Consensus 143 vILRGGsea~~Sn~ai~~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l~~y-iD~iIPRGg-~~Li~~v~~~a~vP 219 (417)
T COG0014 143 VILRGGSEAIHSNAAIVEVIQEALEKAGLPADAVQLIEDTDREEVLELLR-LDGY-IDLVIPRGG-AGLIRRVVENATVP 219 (417)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHH-HCCC-EEEEECCCC-HHHHHHHHHCCCCC
T ss_conf 99707577766479999999999987199988821116788799999982-0676-369973895-79999998479587
Q ss_pred CCCCCCCCCC
Q ss_conf 1111234566
Q gi|254780300|r 127 SIINAGDGTH 136 (316)
Q Consensus 127 pVINag~~~~ 136 (316)
||-.|.|..
T Consensus 220 -Vi~~~~G~C 228 (417)
T COG0014 220 -VIEHGVGNC 228 (417)
T ss_pred -EEECCCCEE
T ss_conf -885475037
No 170
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=41.53 E-value=14 Score=17.29 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCHHHCC-HHHHHHHHHHHHHHHHHHHC---CCCCC---CCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7822389-99999999999999964420---48775---21289769999-60787337899997987613521112333
Q gi|254780300|r 10 VTVKDLS-MQDVNYLLDRANEYFQKKSH---FNPST---TRLQGLTQINL-FLETSTRTQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 10 L~~~dl~-~~el~~ll~~A~~~k~~~~~---~~~~~---~~L~gk~~~~l-F~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316)
|.+-|+. ++-+..+-.+|.++.+.... ....+ ..|+|...+.. |.--....|..=|.--.+.|- ++.+
T Consensus 32 i~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGv----igQE 107 (419)
T cd05296 32 LVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGV----IGQE 107 (419)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCC----CCCC
T ss_conf 999899859999999999999999609980899967999983699999998733793076776543876497----6534
Q ss_pred CCCC-------CCCCCCCCHHHHHHHHCCCCEEEECCCCCH-HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 3210-------133342247999874136714652032100-55420012342111123456631223322222220122
Q gi|254780300|r 82 NSAM-------KKGENIADTIATLNALRPNIIVIRHPYSGA-VNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK 153 (316)
Q Consensus 82 ~s~~-------~kgEs~~Dta~vls~~~~d~iv~R~~~~~~-~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~ 153 (316)
+... ..=-.+.|.++.+..+.+|++++=...... +.++........+|+.|++.. +..+.||.++-+.
T Consensus 108 T~G~GG~~~alRtiP~~l~ia~~i~e~cP~AwliNytNP~~ivt~a~~r~~~~k~vGlCh~~~-~~~~~la~~Lg~~--- 183 (419)
T cd05296 108 TTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHTGDRVIGLCNVPI-GLQRRIAELLGVD--- 183 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHHHHCCC---
T ss_conf 767479998762289999999999986998389973787999999999668998899797779-8999999995898---
Q ss_pred CCCCCCCEEECC
Q ss_conf 210001001035
Q gi|254780300|r 154 GKISNLHIAICG 165 (316)
Q Consensus 154 g~l~~l~ia~vG 165 (316)
.+.+.+-+.|
T Consensus 184 --~~~i~~~~~G 193 (419)
T cd05296 184 --PEDVFIDYAG 193 (419)
T ss_pred --HHHEEEEEEE
T ss_conf --7990789986
No 171
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=41.05 E-value=26 Score=15.68 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC----HHHHHHCCCCCCCCCCCCCCCC-CCH
Q ss_conf 35211123333-------21013334224799987413671465203210----0554200123421111234566-312
Q gi|254780300|r 72 GVHVININTKN-------SAMKKGENIADTIATLNALRPNIIVIRHPYSG----AVNSLMHKIKGPSIINAGDGTH-EHP 139 (316)
Q Consensus 72 Gg~~i~l~~~~-------s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~----~~~~~a~~~s~ppVINag~~~~-~HP 139 (316)
+.+++.++..+ +.+.+||+ ++..++.++.|+..+=+-+-. .+....+.+..| +++|=- . .-.
T Consensus 75 ~~n~llldaGD~~qGt~~s~l~~g~p---~i~~mN~lgyDa~tlGNHEFD~G~~~l~~~~~~a~fP-~LsANi--~~~~~ 148 (551)
T PRK09558 75 GGSVLLLSGGDINTGVPESDLQDAEP---DFRGMNLIGYDAMAVGNHEFDNPLSVLRKQEKWAKFP-FLSANI--YQKST 148 (551)
T ss_pred CCCEEEEECCCCCCCCCCCHHCCCCH---HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEE--EECCC
T ss_conf 99879995885556774604228807---9999861898889777544557878999998527997-798665--67788
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 233222222201222100010010355
Q gi|254780300|r 140 SQALLDAFAIRHFKGKISNLHIAICGD 166 (316)
Q Consensus 140 ~Q~LaDl~Ti~e~~g~l~~l~ia~vGD 166 (316)
-+-+..=|+|.|. +|+||+++|=
T Consensus 149 g~~~~~py~I~e~----~G~kVGiIGl 171 (551)
T PRK09558 149 GERLFKPYKIFDV----QGLKIAVIGL 171 (551)
T ss_pred CCCCCCCEEEEEE----CCEEEEEEEC
T ss_conf 9815577699997----9969999971
No 172
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=40.85 E-value=26 Score=15.68 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCC-CC-EEEECCCCCCCC----CCCCCCC---CCCCCCHHHCCCCCCEEEEEEE
Q ss_conf 1001035544330133446642013-42-055327753222----1121234---3300584560368622100011
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTM-GA-RIRVIAPITLLP----KDISNMG---VEVFHDMQKGLKNVDVIMILRM 226 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~-g~-~v~~~~P~~~~~----~~~~~~~---~~~~~d~~ea~~~aDvv~~~~~ 226 (316)
-.++.+|- +..++-.++++... +. ++++.++..-.. .+..+.+ +.-..+.++++++||+|++..-
T Consensus 131 ~~laiIGa---G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~ 204 (330)
T COG2423 131 STLAIIGA---GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATP 204 (330)
T ss_pred CEEEEECC---CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCEEEEECC
T ss_conf 57999888---489999999999628961899976898999999999876338651323689988613998999428
No 173
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=40.64 E-value=13 Score=17.60 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=7.7
Q ss_pred CCCCHHHCCHHHHHHHHHH
Q ss_conf 4178223899999999999
Q gi|254780300|r 8 NFVTVKDLSMQDVNYLLDR 26 (316)
Q Consensus 8 ~fL~~~dl~~~el~~ll~~ 26 (316)
|=+++-||.++-++.+.+.
T Consensus 20 H~v~~FDL~p~av~~~v~a 38 (290)
T TIGR01692 20 HAVRVFDLSPKAVEELVEA 38 (290)
T ss_pred CEEEEEECCHHHHHHHHHC
T ss_conf 7257751788999999960
No 174
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=40.57 E-value=20 Score=16.44 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=6.9
Q ss_pred CCCCCHHHHHHCCC
Q ss_conf 35758899983799
Q gi|254780300|r 245 VYSLDEKKLKYAKK 258 (316)
Q Consensus 245 ~~~v~~~~l~~a~~ 258 (316)
++.-|.++++.|++
T Consensus 253 g~esTAel~E~Ard 266 (335)
T TIGR01546 253 GLESTAELVEYARD 266 (335)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 86326898898886
No 175
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.73 E-value=28 Score=15.44 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 111234566312233222222
Q gi|254780300|r 128 IINAGDGTHEHPSQALLDAFA 148 (316)
Q Consensus 128 VINag~~~~~HP~Q~LaDl~T 148 (316)
||-||- ..-|-|.=.|++.
T Consensus 76 VitAG~--~~k~g~~R~dLl~ 94 (312)
T cd05293 76 IVTAGA--RQNEGESRLDLVQ 94 (312)
T ss_pred EECCCC--CCCCCCCHHHHHH
T ss_conf 988999--9998988899999
No 176
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.66 E-value=28 Score=15.43 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=9.3
Q ss_pred CHHHCCHHHHHHHHHHHHH
Q ss_conf 8223899999999999999
Q gi|254780300|r 11 TVKDLSMQDVNYLLDRANE 29 (316)
Q Consensus 11 ~~~dl~~~el~~ll~~A~~ 29 (316)
.+-|.+++.++.-.++..+
T Consensus 29 ~l~D~~~~~~~~~~~~i~~ 47 (284)
T PRK07819 29 LVFETTEEAATAGRNRIEK 47 (284)
T ss_pred EEEECCHHHHHHHHHHHHH
T ss_conf 9997988999999999999
No 177
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=39.39 E-value=15 Score=17.28 Aligned_cols=147 Identities=22% Similarity=0.233 Sum_probs=83.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH------------CC
Q ss_conf 013334224799987413671465203210055420012342111123456631223322222220------------12
Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIR------------HF 152 (316)
Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~------------e~ 152 (316)
+.-|-....|++-+..- +|+|++--|..=.+++.+---.. .-..+-|=..|.|+--|. ++
T Consensus 39 ~aaGa~~a~ta~~~~e~-~Dvi~~MvP~sPqVeeva~GenG-------i~e~ak~G~~lvDMSSI~P~~s~~~a~a~k~k 110 (291)
T TIGR01505 39 LAAGAESAETAKEVVED-ADVIVTMVPDSPQVEEVAFGENG-------ILEAAKKGKVLVDMSSIAPLESKELAKAVKEK 110 (291)
T ss_pred HHCCCHHHHHHHHHHHH-CCEEEEECCCCCCEEEEEECCCC-------CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 86173228999999974-89799843876970156556875-------21256888778870567826689999999972
Q ss_pred CC-------------CCCC-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCC-----------------
Q ss_conf 22-------------1000-1001035544330133446642013420553277532--2211-----------------
Q gi|254780300|r 153 KG-------------KISN-LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKD----------------- 199 (316)
Q Consensus 153 ~g-------------~l~~-l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~----------------- 199 (316)
-+ -+|+ |.|..=|| ..++.-..-++..+|-.+++++|.+- --+-
T Consensus 111 Gid~LDAPVSGGE~gAiegtLSiMVGGd---~A~Fd~~kpL~ealgk~ivl~G~~G~Gqt~K~ANQ~IVAlNI~A~sEAl 187 (291)
T TIGR01505 111 GIDVLDAPVSGGEIGAIEGTLSIMVGGD---KAVFDKVKPLLEALGKSIVLVGENGDGQTVKVANQVIVALNIEAVSEAL 187 (291)
T ss_pred CCCEEECCCCCCCCCCCCCEEEEEECCC---CCHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHH
T ss_conf 8845207778987100124365876486---1106766699997269589878889974040544788888699999999
Q ss_pred --CCCCCC---CCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf --212343---3005845603686221000113312333444455542023575889
Q gi|254780300|r 200 --ISNMGV---EVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEK 251 (316)
Q Consensus 200 --~~~~~~---~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~ 251 (316)
.++.|+ .++.-+..++.++.|+-. ..+ .--.|+|+..|+|+.-
T Consensus 188 ~fa~KaGvdp~~v~qal~GGlAgStvL~~-------k~~--~~~~R~FkPGFrIdLH 235 (291)
T TIGR01505 188 VFAEKAGVDPKLVLQALRGGLAGSTVLEV-------KKE--RVLDRDFKPGFRIDLH 235 (291)
T ss_pred HHHHHCCCCHHHHHHHHCCCCCCHHHHHH-------CCC--CCCCCCCCCCCEEHHH
T ss_conf 99875288999999986186501023311-------263--2125788798530531
No 178
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.05 E-value=29 Score=15.37 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=9.3
Q ss_pred CHHHCCHHHHHHHHHHHH
Q ss_conf 822389999999999999
Q gi|254780300|r 11 TVKDLSMQDVNYLLDRAN 28 (316)
Q Consensus 11 ~~~dl~~~el~~ll~~A~ 28 (316)
.+.|.+++.++...+...
T Consensus 31 ~l~D~~~e~~~~~~~~i~ 48 (292)
T PRK07530 31 LLNDVSADRLESGMATIN 48 (292)
T ss_pred EEEECCHHHHHHHHHHHH
T ss_conf 999798899999999999
No 179
>PRK08618 ornithine cyclodeaminase; Validated
Probab=38.98 E-value=29 Score=15.36 Aligned_cols=99 Identities=18% Similarity=0.279 Sum_probs=50.6
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHC-CCC-EEEECCCCCC----CCCCC---CCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 100103554433013344664201-342-0553277532----22112---12343300584560368622100011331
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNT-MGA-RIRVIAPITL----LPKDI---SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~-~g~-~v~~~~P~~~----~~~~~---~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
.+++++|- +..+++.+.++.. .+. ++++..+..- +.+.. .+..+..+.++++++.+||+|++..-..+
T Consensus 128 ~~l~iiGa---G~QA~~~~~a~~~v~~i~~v~v~~r~~~~~~~f~~~~~~~~g~~v~~~~~~~~av~~aDiV~taT~s~~ 204 (325)
T PRK08618 128 KTLCLIGT---GGQAKGQLEAVLAVRDIEKVRVYSRTFEKAYAFAQEIQSKFNTEIYVVESADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CEEEEECC---HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECCCCC
T ss_conf 56999756---079999999998608966899994799999999999987509966995899999843988999259998
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC---CCCCCCCCCHHHHCCC
Q ss_conf 2333444455542023575889998379985995589---9876874476797699
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG---PINRNYEISSSVADGS 282 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL---P~~Rg~Ev~~~v~d~~ 282 (316)
-. ++.. .++++.+..-. |-. .|++.+++..-
T Consensus 205 Pv----------------~~~~----l~~g~hi~aiGs~~p~~--~El~~~~l~~a 238 (325)
T PRK08618 205 PV----------------FSEK----LKKGVHINAVGSFRPDM--QEIPSEAIARA 238 (325)
T ss_pred CC----------------CCCC----CCCCEEECCCCCCCCCC--CCCCHHHHHHC
T ss_conf 64----------------4543----58871751324689863--45789999519
No 180
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=38.69 E-value=18 Score=16.73 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=99.8
Q ss_pred HHHHHHCC-CCCCC-CCCCCC-CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 79876135-21112-333321-0133342247999874136714652032100554200123421111234566312233
Q gi|254780300|r 66 VAGKLLGV-HVINI-NTKNSA-MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQA 142 (316)
Q Consensus 66 ~A~~~LGg-~~i~l-~~~~s~-~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~ 142 (316)
-+.+.+++ .++.| .+..+. ...+|.+.-.+.|+-+|=...=+.+ +-..+++.|+.+..++||.+|||+.
T Consensus 55 ~~~K~~~dvdv~iLC~gsatd~pe~~p~fA~~~nTvDsfD~H~~Ip~--~r~~~DaaA~~~g~VSvis~GWDPG------ 126 (326)
T TIGR01921 55 EDEKELEDVDVLILCTGSATDLPEQKPYFAAFINTVDSFDIHTDIPD--LRRTLDAAAKEAGAVSVISAGWDPG------ 126 (326)
T ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH--HHHHHHHHHHHCCCEEEEEECCCCC------
T ss_conf 22320288259997388645554345100122101236502242078--9999999998619878998347887------
Q ss_pred HHHHHHHHCCCC---CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 222222201222---10001001035544330133446642013420--5532775322211212343300584560368
Q gi|254780300|r 143 LLDAFAIRHFKG---KISNLHIAICGDILHSRVARSDIMLLNTMGAR--IRVIAPITLLPKDISNMGVEVFHDMQKGLKN 217 (316)
Q Consensus 143 LaDl~Ti~e~~g---~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~--v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~ 217 (316)
++-|.+..| --+|.+.++.||.+ | .-||...-. .=|++ |...-|.+=-.+...++--+... ......
T Consensus 127 ---~fSi~Rv~geA~lp~g~tyTfwGpGl-S-~GHsdAvrr-IdGVk~Av~yTlP~~DA~E~~R~GE~~~LT--g~~~H~ 198 (326)
T TIGR01921 127 ---LFSINRVLGEAILPKGITYTFWGPGL-S-QGHSDAVRR-IDGVKAAVQYTLPIKDALEKVRRGEAEELT--GKEIHR 198 (326)
T ss_pred ---CHHHHHHHHHHHHCCCCEEEEECCCC-C-CCHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCC--CCCEEE
T ss_conf ---26799999997501686133237886-6-435898876-566788864178857888986268888887--565001
Q ss_pred CCEEEEEEEC--CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC-CCCCCCCCCCHHHHCC
Q ss_conf 6221000113--31233344445554202357588999837998599558-9987687447679769
Q gi|254780300|r 218 VDVIMILRMQ--QERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP-GPINRNYEISSSVADG 281 (316)
Q Consensus 218 aDvv~~~~~~--~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc-LP~~Rg~Ev~~~v~d~ 281 (316)
-.|.+.+.=+ .|+.. .......+|+..|.++-.+... .++..=|- || .|.-|...=.-|
T Consensus 199 R~~~vvl~eG~~~e~ve-~eI~t~~~YFv~yet~V~fi~e--~~f~~~~tGMP--HGg~vir~G~sG 260 (326)
T TIGR01921 199 RECYVVLKEGAEFEKVE-AEIKTMADYFVEYETEVNFIDE--VDFDLDHTGMP--HGGFVIRKGESG 260 (326)
T ss_pred EEEEEECCCCCCHHHHH-HHHCCCCCCCCCCCEEEEECCC--HHHHHCCCCCC--CCCEEEECCCCC
T ss_conf 58999736887836899-9834787765775017985073--12120078988--575387105778
No 181
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=38.68 E-value=29 Score=15.33 Aligned_cols=37 Identities=8% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 1000100103554433013344664201342055327753
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
.+.|.++..+| .+++.......+..||+++....|..
T Consensus 134 ~l~~~~~giiG---~G~iG~~va~~~~~~g~~v~~~d~~~ 170 (313)
T pfam00389 134 ELRGKTLGVIG---GGGIGGIGAAIAKALGMGVVAYDPYP 170 (313)
T ss_pred CCCCCEEEEEE---ECCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 36898899994---65436999999997698699995799
No 182
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=38.49 E-value=29 Score=15.31 Aligned_cols=91 Identities=19% Similarity=0.286 Sum_probs=56.7
Q ss_pred CCEEEECCCCCHHHH--HHCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHCCC----CCCCCCCEEECCC-CCC
Q ss_conf 714652032100554--200123421111-------23456631223322222220122----2100010010355-443
Q gi|254780300|r 104 NIIVIRHPYSGAVNS--LMHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRHFK----GKISNLHIAICGD-ILH 169 (316)
Q Consensus 104 d~iv~R~~~~~~~~~--~a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e~~----g~l~~l~ia~vGD-~~~ 169 (316)
|+++ =.|+.+.... +++.+..| .-. .|-+- -.|+|.+-+.- ++.++ ..++|.+|..|-| +..
T Consensus 277 D~Vi-~VPdsg~~~a~gya~~~~ip-~~~~likn~y~gRtF-I~p~q~~R~~~-v~~Klnp~~~~i~gK~vvlvDDSIVR 352 (445)
T PRK08525 277 DFVV-PVPDSGVSAAIGYAQESGIP-FEMAIVRNHYVGRTF-IEPTQEMRNLK-VKLKLNPMRKVLEGKRIVVIDDSIVR 352 (445)
T ss_pred CCEE-ECCCCHHHHHHHHHHHHCCC-HHHHHHHHHCCCCCC-CCCCHHHHHHH-HCCCEEEHHHHCCCCEEEEECCCCCC
T ss_conf 8178-65898578899999982994-555312220026301-48854455653-23230023452179869998176155
Q ss_pred CCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 3013344664201342---0553277532221
Q gi|254780300|r 170 SRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 170 ~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+++.+..+.++...|+ ++++++|+-..|-
T Consensus 353 GtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC 384 (445)
T PRK08525 353 GTTSKKIVSLLRAAGASEIHMAIACPEIKFPC 384 (445)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 77899999999977998899996899968886
No 183
>PRK06199 ornithine cyclodeaminase; Validated
Probab=38.46 E-value=24 Score=15.90 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=39.6
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHH-CC-CC-EEEECCCCCC----CCCCC-----CCCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 0010010355443301334466420-13-42-0553277532----22112-----123433005845603686221000
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLN-TM-GA-RIRVIAPITL----LPKDI-----SNMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~-~~-g~-~v~~~~P~~~----~~~~~-----~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
+..+++++|- +..+++.+.++. .+ .. ++++..+..- +.+++ ....++...++++++.++|+|++.
T Consensus 154 da~~lgiIG~---G~qAr~~l~Al~~vrp~i~~V~V~~r~~~~a~~fa~~~~~~~~~~~~v~~~~s~eeav~~aDIVvta 230 (379)
T PRK06199 154 DAKVVGLVGP---GVMGKTIVAAFMAVCPGIDTIKIKGRSQKSLDAFATWVAETYPQITEVVVVDSEEEVVRGSDIVTYC 230 (379)
T ss_pred CCCEEEEECC---HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCEEEEC
T ss_conf 9978999896---3999999999998617888899988999999999999997668885089829999997379999977
Q ss_pred EE
Q ss_conf 11
Q gi|254780300|r 225 RM 226 (316)
Q Consensus 225 ~~ 226 (316)
.-
T Consensus 231 Ts 232 (379)
T PRK06199 231 TS 232 (379)
T ss_pred CC
T ss_conf 77
No 184
>PRK06545 prephenate dehydrogenase; Validated
Probab=38.39 E-value=22 Score=16.08 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=22.8
Q ss_pred CCCCCEEECCCCC-CCCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 0001001035544-33013344664201342055327753
Q gi|254780300|r 156 ISNLHIAICGDIL-HSRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 156 l~~l~ia~vGD~~-~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
++|..+..++.-. ......-...+...+|+.+....|++
T Consensus 135 F~~a~~iltP~~~t~~~~~~~v~~l~~~lGa~~~~m~~~e 174 (357)
T PRK06545 135 FENAPWVLTPDDHVDPEAVAELKDLLSGTGAKFVVMDAEE 174 (357)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 6698199963899999999999999997599899818899
No 185
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=37.74 E-value=30 Score=15.24 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=40.7
Q ss_pred CCHHH-----HHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 31223-----322222220122210001001035544330133446642013420553277532
Q gi|254780300|r 137 EHPSQ-----ALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316)
Q Consensus 137 ~HP~Q-----~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316)
..|.| .|.|+...-+ ...+.+--+..|||+..-|---||.+-.+.+|.++-+-.+++-
T Consensus 200 Tt~~Qrtv~gTL~~Ia~~v~-~~~i~~PAvIVVGeVV~lR~~L~WfE~kPLfG~rVLVtRtreQ 262 (474)
T PRK07168 200 TTGKQRVVTGTLSTIVSIVK-NENISNPSMTIVGDVVSLRNQIAWKERKPLHGKKVLFTSATNK 262 (474)
T ss_pred CCCCCEEEEEEHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
T ss_conf 97572899999999999999-7378998299988400555536753568878867997786677
No 186
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.64 E-value=30 Score=15.23 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=16.1
Q ss_pred HHHCCCCCHHHHHHHH----HHHHHHHHHHH
Q ss_conf 7976997016868775----69999999999
Q gi|254780300|r 277 SVADGSQSIIQYQVEM----GVAVRMAIIKE 303 (316)
Q Consensus 277 ~v~d~~~s~v~~Qa~N----rl~~~~AlL~~ 303 (316)
-|+-+|-|.-|+|=.| |-+-+.++-+.
T Consensus 463 ~VLlSPacaSfD~F~nyeeRG~~F~~~V~~L 493 (501)
T PRK02006 463 AVLLSPACASLDMFRNYAHRAQVFRAAVEEL 493 (501)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8998961103012069999999999999999
No 187
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.61 E-value=21 Score=16.24 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 212897699996078733789999798761352111233332101333422479998741
Q gi|254780300|r 42 TRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNAL 101 (316)
Q Consensus 42 ~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~ 101 (316)
+.|+||.+..+=.- +|=.|......+.|..+...|.++ .+.+.+...-+...
T Consensus 10 ~~l~~kkv~i~GlG---~sG~a~a~~L~~~g~~v~~~D~~~-----~~~~~~~~~~l~~~ 61 (458)
T PRK01710 10 DFIKNKKVAVVGIG---VSNIPLIKFLVKLGAKVTAFDKKS-----EEELGEISLELKEK 61 (458)
T ss_pred HHHCCCEEEEEEEC---HHHHHHHHHHHHCCCEEEEEECCC-----CHHHHHHHHHHHHC
T ss_conf 99789969999787---889999999997889799998988-----43148999999857
No 188
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=37.25 E-value=31 Score=15.19 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=60.7
Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC--CC--CCCCCCCCCHHHCCCCCCEEEEEE
Q ss_conf 01222100010010355443301334466420134205532775322211--21--234330058456036862210001
Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD--IS--NMGVEVFHDMQKGLKNVDVIMILR 225 (316)
Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--~~--~~~~~~~~d~~ea~~~aDvv~~~~ 225 (316)
+..+|++.+.++.++|- +-+....+..+..-|+.-..++-..+.... .. ++.+.-++++.+.+.++|||+.-.
T Consensus 170 ~~~~~~L~~~~vlvIGA---Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissT 246 (414)
T COG0373 170 KRIFGSLKDKKVLVIGA---GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISST 246 (414)
T ss_pred HHHHCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEECHHHHHHHHHHCCEEEEEC
T ss_conf 99836544676999865---189999999998589877999758789999999983870221877887652079999906
Q ss_pred ECCHHHHHHHHHHHHHHCCCCCCCHHHHHHC---CCCCEEECCC--CCCCCCC
Q ss_conf 1331233344445554202357588999837---9985995589--9876874
Q gi|254780300|r 226 MQQERIPRSLIPSIREYKHVYSLDEKKLKYA---KKDALVMHPG--PINRNYE 273 (316)
Q Consensus 226 ~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a---~~~ai~mHcL--P~~Rg~E 273 (316)
-. ..+.|+.+.+..+ ++. +||=.+ | |..|
T Consensus 247 sa----------------~~~ii~~~~ve~a~~~r~~-~livDiavP--Rdie 280 (414)
T COG0373 247 SA----------------PHPIITREMVERALKIRKR-LLIVDIAVP--RDVE 280 (414)
T ss_pred CC----------------CCCCCCHHHHHHHHHCCCC-EEEEEECCC--CCCC
T ss_conf 99----------------8554078889988741167-599982699--9987
No 189
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=37.21 E-value=31 Score=15.19 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 233222222201222100010010355
Q gi|254780300|r 140 SQALLDAFAIRHFKGKISNLHIAICGD 166 (316)
Q Consensus 140 ~Q~LaDl~Ti~e~~g~l~~l~ia~vGD 166 (316)
.||++|+..-+..+ ...+.|-.|
T Consensus 117 ~~Ai~dlv~~~~W~----~v~~iY~~d 139 (327)
T cd06382 117 SRAYADIVKSFNWK----SFTIIYESA 139 (327)
T ss_pred HHHHHHHHHHCCCC----EEEEEEECC
T ss_conf 99999999867984----899999684
No 190
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=36.42 E-value=31 Score=15.11 Aligned_cols=77 Identities=18% Similarity=0.354 Sum_probs=36.8
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCC---H----HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 17822389999999999999999644204877521289769999607873---3----7899997987613521112333
Q gi|254780300|r 9 FVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETST---R----TQTSFEVAGKLLGVHVININTK 81 (316)
Q Consensus 9 fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpSt---R----TR~SFe~A~~~LGg~~i~l~~~ 81 (316)
|.-..+|+..-+..|++. +-.+..++.+|.- | +-.....-+.+.|..+.. ++
T Consensus 5 f~Gt~~fs~~~L~~L~~~-------------------~~~i~~Vvt~pdk~~gR~~k~~~~~v~~~a~~~~i~~~~--p~ 63 (309)
T PRK00005 5 FMGTPEFAVPSLKALLES-------------------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQ--PE 63 (309)
T ss_pred EECCCHHHHHHHHHHHHC-------------------CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEE--CC
T ss_conf 988988999999999978-------------------994799992999866899979899899999986993883--57
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCC
Q ss_conf 3210133342247999874136714652032
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPY 112 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~ 112 (316)
+ ++. .|....+..+.+|++++-.+.
T Consensus 64 ~--~~~----~~~~~~l~~~~~Dl~vv~~~g 88 (309)
T PRK00005 64 S--LRD----PEFLAELAALNADVIVVVAYG 88 (309)
T ss_pred C--CCC----HHHHHHHHHCCCCEEEEEEHH
T ss_conf 7--999----999999984199999997523
No 191
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006219 Members of this group catalyze the first enzymatic reaction of the shikimate pathway. The common (shikimate) pathway links metabolism of carbohydrates to biosynthesis of aromatic amino acids phenylalanine, tyrosine, tryptophan, and derivatives in microorganisms and in plants. In a sequence of seven enzymatic reactions, D-erythrose 4-phosphate (E4P), an intermediate of the pentose phosphate pathway, and phosphoenol pyruvate (PEP), a glycolytic intermediate, are converted to chorismate. The pathway begins with the stereospecific condensation of E4P and PEP to yield 7-phospho 2-dehydro 3-deoxy-D-arabino-heptulosonate (DAHP), catalyzed by 3-deoxy-7-phosphoheptulonate synthase (DAHPS) (EC 2.5.1.54, formerly EC 4.1.2.15). The divalent metal cation requirement of this enzyme can be satisfied by a broad range of metals . A Cys residue in a Cys-X-X-His motif has been identified as part of a metal binding site . In Escherichia coli, the enzyme exists in three isoforms, each specifically inhibited by one of the three aromatic amino acids. DAHP synthetases fall into two classes, class I (represented by this entry) and class II (represented by PIRSF015573 from PIRSF). Class I was believed to be limited to microorganisms and class II to plants. However, a more recent study showed that class II also contains enzymes from a microbial eukaryote and several bacteria . Brick and Woodard proposed that the difference between the two classes lies in their metal ion requirement for activity. Whereas class I requires no metal cation, class II is dependent on a metal cation for activity. However, recently a class I DAHP synthase from Thermotoga maritima has been purified, characterised, and shown to be a metalloenzyme . The three-dimentional structures of DAHP synthases have been determined , , , , . The DAHPS(Phe) monomer is a (beta/alpha)8 barrel with an additional N-terminal beta strand and helices and an extra beta sheet near the C terminus . The active site is located in a cleft at the carboxyl end of the barrel . The allosteric feedback inhibition binding site of DAHPS(Phe) is composed of residues from two adjacent subunits of a tight dimer and is at least 20 angstroms away from the closest active site . The absence of the shikimate pathway in animals makes it an attractive target for nontoxic herbicidal, antimicrobial, and antifungal agents. The nontoxic herbicide glyphosphate competitively inhibits 3-phosphoshikimate 1-carboxyvinyltransferase, the sixth enzymatic reaction of the pathway.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=36.28 E-value=14 Score=17.35 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE--EEEECCCCHHHH-------------HHH------------HHHHHHC
Q ss_conf 9999999999996442048775212897699--996078733789-------------999------------7987613
Q gi|254780300|r 20 VNYLLDRANEYFQKKSHFNPSTTRLQGLTQI--NLFLETSTRTQT-------------SFE------------VAGKLLG 72 (316)
Q Consensus 20 l~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~--~lF~kpStRTR~-------------SFe------------~A~~~LG 72 (316)
...=++.|..|++...++... | .++ -+||||=| =+ ||. .-++.+|
T Consensus 64 P~AA~eYA~RL~~L~~~l~~~---L---~IvMRvYfEKPRT--tVGWKGLINDP~ln~sf~in~GL~iARkLL~~~~~~G 135 (348)
T TIGR00034 64 PEAAIEYATRLKKLREKLKDD---L---EIVMRVYFEKPRT--TVGWKGLINDPDLNGSFRINKGLRIARKLLLDLNNLG 135 (348)
T ss_pred HHHHHHHHHHHHHHHHHHCCC---C---EEEEEEEECCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 689999999999999875037---6---0787643169870--1034444588888885220256899999998886315
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHH-HHHCCCCCCC-CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 52--1112333321013334224799987413671465203210055-4200123421-111234566312233222222
Q gi|254780300|r 73 VH--VININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVN-SLMHKIKGPS-IINAGDGTHEHPSQALLDAFA 148 (316)
Q Consensus 73 g~--~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~-~~a~~~s~pp-VINag~~~~~HP~Q~LaDl~T 148 (316)
-- .-+||+-+-|. +.|++ +| .+|.+||.++.... +||.-.|.|. +=|+-||. .|+=.|.+-
T Consensus 136 lP~a~EfLD~~sPQy-----lADl~----Sw--GAIGARTTESQ~HRrElASGLS~PVGFKNGTDG~----~~vAiDA~~ 200 (348)
T TIGR00034 136 LPIAGEFLDMISPQY-----LADLV----SW--GAIGARTTESQVHRRELASGLSCPVGFKNGTDGN----LKVAIDAIR 200 (348)
T ss_pred CCCCCCCCCCCCHHH-----HHHHH----HH--HCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC----HHHHHHHHH
T ss_conf 763443124666378-----99999----75--1322012211667999875456633431357874----889999999
No 192
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=35.76 E-value=29 Score=15.37 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=7.2
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 97987613521112333
Q gi|254780300|r 65 EVAGKLLGVHVININTK 81 (316)
Q Consensus 65 e~A~~~LGg~~i~l~~~ 81 (316)
..+..+.|-.++.+|.+
T Consensus 16 a~~la~~G~~V~g~D~d 32 (185)
T pfam03721 16 AVCLAEIGHDVVGVDIN 32 (185)
T ss_pred HHHHHHCCCEEEEEECC
T ss_conf 99999489939999799
No 193
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=35.63 E-value=19 Score=16.50 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=65.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCC---CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCC------
Q ss_conf 78223899999999999999996442048---775---212897699996078733789999798761352111------
Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHFN---PST---TRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVIN------ 77 (316)
Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~~---~~~---~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~------ 77 (316)
|-+-|++.+-++.+...++.+.+.....- ..+ ..|.|...++.= .|-||....
T Consensus 35 i~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~---------------~rvG~l~~r~~De~I 99 (442)
T COG1486 35 LALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVITQ---------------IRVGGLEAREKDERI 99 (442)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEE---------------EEECCCCCCHHHHCC
T ss_conf 99983877889999999999999639985899945899984479889998---------------750684300223113
Q ss_pred ------CCCCCC---CCCCC----CCCCCHHHHHHHHCCCCEEEECCCCCH-HHHHHCC-CCCCCCCCCCCCCCCCHHHH
Q ss_conf ------233332---10133----342247999874136714652032100-5542001-23421111234566312233
Q gi|254780300|r 78 ------INTKNS---AMKKG----ENIADTIATLNALRPNIIVIRHPYSGA-VNSLMHK-IKGPSIINAGDGTHEHPSQA 142 (316)
Q Consensus 78 ------l~~~~s---~~~kg----Es~~Dta~vls~~~~d~iv~R~~~~~~-~~~~a~~-~s~ppVINag~~~~~HP~Q~ 142 (316)
.+.++. .+-+| --+-|.++-+..|.+|+.++-...... +.++... +...-+|+.|+++. +=--.
T Consensus 100 plkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNPa~~vTeAv~r~~~~~K~VGlCh~~~-g~~~~ 178 (442)
T COG1486 100 PLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRLYPKIKIVGLCHGPI-GIAME 178 (442)
T ss_pred CHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHH
T ss_conf 26417045446472078763024419999999999869774787436869999999998578787897588457-89999
Q ss_pred HHHHHHHHC
Q ss_conf 222222201
Q gi|254780300|r 143 LLDAFAIRH 151 (316)
Q Consensus 143 LaDl~Ti~e 151 (316)
||+++.+..
T Consensus 179 lAe~L~~~~ 187 (442)
T COG1486 179 LAEVLGLEP 187 (442)
T ss_pred HHHHHCCCC
T ss_conf 999958994
No 194
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=35.25 E-value=33 Score=14.99 Aligned_cols=91 Identities=26% Similarity=0.321 Sum_probs=55.8
Q ss_pred CCEEEECCCCCHHHHH--HCCCCCCCCC-----C--CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCC
Q ss_conf 7146520321005542--0012342111-----1--2345663122332222222012----22100010010355-443
Q gi|254780300|r 104 NIIVIRHPYSGAVNSL--MHKIKGPSII-----N--AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILH 169 (316)
Q Consensus 104 d~iv~R~~~~~~~~~~--a~~~s~ppVI-----N--ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~ 169 (316)
| +|+-.|+.+....+ ++.+..| .- | -|-+-. -|+|.+-+.- ++-+ ...++|.+|+.|-| +..
T Consensus 293 D-vV~~VPdSg~~aA~gya~~sgip-~~~glikn~yvgRTFI-~p~q~~R~~~-v~~Kln~~~~~v~gK~vvlvDDSIVR 368 (472)
T PRK05793 293 D-IVIGVPDSGIPAAIGYAKASGIP-YGIGFIKNKYVGRTFI-APSQELRERA-VRVKLNPLKVNVEGKRVVLIDDSIVR 368 (472)
T ss_pred C-EEECCCCCHHHHHHHHHHHCCCC-HHHHHHHCCCCCCCCC-CCCHHHHHHC-CCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 8-79817997599999999861994-3440122052155576-8867789751-46232320210069869998077055
Q ss_pred CCHHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 3013344664201342---0553277532221
Q gi|254780300|r 170 SRVARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 170 ~~v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+++.+..+.++...|+ ++++++|+-..|-
T Consensus 369 GtT~k~iv~~Lr~aGakeVh~ri~sPpi~~pc 400 (472)
T PRK05793 369 GTTSKRLVESLRRAGAKEVHFRVSSPPVKYPC 400 (472)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 76799999999977999899996899968876
No 195
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.44 E-value=24 Score=15.84 Aligned_cols=75 Identities=17% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHCCCCCCCCCCC-CCCCCCCHHHHHHHH-HHHHCCC--CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 542001234211112-345663122332222-2220122--210001001035544330133446642013420553277
Q gi|254780300|r 117 NSLMHKIKGPSIINA-GDGTHEHPSQALLDA-FAIRHFK--GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAP 192 (316)
Q Consensus 117 ~~~a~~~s~ppVINa-g~~~~~HP~Q~LaDl-~Ti~e~~--g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316)
..+.+...+| |||. |+|...+-||+---. -.+.... ..-+...+.++|++ +..|..-+...+..+|.++.-.-|
T Consensus 111 ~rls~~~~v~-Vv~vs~sGiettFTQGEDa~LaAlvp~~P~~~~~~~~LvlvGsl-~d~vedq~~~ll~~lGI~vv~~LP 188 (396)
T cd01979 111 PRLSAEIGVP-ILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSL-PDIVEDQLRRELEQLGIPVVGFLP 188 (396)
T ss_pred HHHHHCCCCE-EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 8753267955-99952687547576799999999986474323788864899705-816899999999976992467758
Q ss_pred C
Q ss_conf 5
Q gi|254780300|r 193 I 193 (316)
Q Consensus 193 ~ 193 (316)
.
T Consensus 189 ~ 189 (396)
T cd01979 189 P 189 (396)
T ss_pred C
T ss_conf 8
No 196
>KOG2711 consensus
Probab=34.40 E-value=34 Score=14.90 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 69999999999
Q gi|254780300|r 293 GVAVRMAIIKE 303 (316)
Q Consensus 293 rl~~~~AlL~~ 303 (316)
|.-+..++.++
T Consensus 321 G~~Ta~~Vy~~ 331 (372)
T KOG2711 321 GPATAKEVYEL 331 (372)
T ss_pred CCHHHHHHHHH
T ss_conf 80779999999
No 197
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=34.19 E-value=21 Score=16.25 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=15.9
Q ss_pred CCCCCCHHHCCCCCCEEEEE
Q ss_conf 33005845603686221000
Q gi|254780300|r 205 VEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 205 ~~~~~d~~ea~~~aDvv~~~ 224 (316)
+....|+++|+.+||+|+|+
T Consensus 182 v~a~td~~~A~~~ADI~vTt 201 (326)
T TIGR02992 182 VTAATDVRAALSGADIIVTT 201 (326)
T ss_pred EEECCCHHHHCCCCCEEEEC
T ss_conf 87504768623668879874
No 198
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=33.42 E-value=35 Score=14.80 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=44.9
Q ss_pred CCEEEEEEECCCCHHH---------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 9769999607873378---------99997987613521112333321013334224799987413671465
Q gi|254780300|r 46 GLTQINLFLETSTRTQ---------TSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVI 108 (316)
Q Consensus 46 gk~~~~lF~kpStRTR---------~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~ 108 (316)
..+++-.|++|.+-.| ..|+.++.+-|-.+..++.+.-+-.-++.+-|.++.--+- +|++|.
T Consensus 67 A~TiGV~fEr~~~~~k~gtaGWYN~~aF~~~A~~~Gl~a~~~ngDAFS~e~K~~vI~~Ik~~~G~-vDlvVY 137 (400)
T PRK13656 67 ADTLGVFFERPGSEKKPGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQKVIELIKQDLGQ-VDLVVY 137 (400)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCC-CCEEEE
T ss_conf 87267885158889987786431689999999977972121452006789999999999986598-467999
No 199
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=32.58 E-value=36 Score=14.71 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=6.1
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 22100010010355
Q gi|254780300|r 153 KGKISNLHIAICGD 166 (316)
Q Consensus 153 ~g~l~~l~ia~vGD 166 (316)
+|++.|.+|..+||
T Consensus 40 rgdL~Gk~iL~vGD 53 (243)
T pfam01861 40 RGDLEGKEILVLGD 53 (243)
T ss_pred CCCCCCCEEEEECC
T ss_conf 38857987999728
No 200
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=32.54 E-value=36 Score=14.71 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=5.8
Q ss_pred CCCCCCCEEECC
Q ss_conf 210001001035
Q gi|254780300|r 154 GKISNLHIAICG 165 (316)
Q Consensus 154 g~l~~l~ia~vG 165 (316)
|...++||.++|
T Consensus 189 g~~~~vKVGiiG 200 (1260)
T PRK09419 189 GRKHGVKVGYIG 200 (1260)
T ss_pred CCCCCEEEEEEE
T ss_conf 872554999993
No 201
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=32.50 E-value=36 Score=14.70 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHH------------------------HHHHHHHHHHHCCC
Q ss_conf 999999999999964420487752128976999960787337------------------------89999798761352
Q gi|254780300|r 19 DVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT------------------------QTSFEVAGKLLGVH 74 (316)
Q Consensus 19 el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRT------------------------R~SFe~A~~~LGg~ 74 (316)
+...-++.|..+++...+... .++- ++=-.|+||=|.. | .+=..+..||.-
T Consensus 66 D~~aaleYA~rL~~l~~~~~d--~l~I--VMRvYfEKPRTtvGWKGli~DP~ldgs~~i~~Gl~~aR-~ll~~i~~lGlP 140 (352)
T PRK12755 66 DPEAALEYARRLKALADELSD--SLLI--VMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIAR-RLLLDLAELGLP 140 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHC--CEEE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCC
T ss_conf 989999999999999998637--5799--98641047754567531155889899857777899999-999999873896
Q ss_pred C--CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 1--1123333210133342247999874136714652032100554200123421-11123456631223322222
Q gi|254780300|r 75 V--ININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS-IINAGDGTHEHPSQALLDAF 147 (316)
Q Consensus 75 ~--i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~pp-VINag~~~~~HP~Q~LaDl~ 147 (316)
+ -+|++-.-|. +.| +-+| .+|..|+.+.....++|...+.|. +=|+-+|. .|+-.|.+
T Consensus 141 ~AtE~Ldp~~pqY-----~~D----LiSW--gAIGARTtESQ~HRelASgLs~PVGFKN~TdG~----i~vAidai 201 (352)
T PRK12755 141 LATEALDPISPQY-----LGD----LISW--GAIGARTTESQTHREMASGLSMPVGFKNGTDGS----LKVAINAI 201 (352)
T ss_pred CCHHHCCCCCHHH-----HHH----HHHE--EEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCC----HHHHHHHH
T ss_conf 4101136776356-----655----4410--222355322577888852788762003688875----89999999
No 202
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=31.57 E-value=38 Score=14.60 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCC----CCCCCCC-CCCCCCCCCCCHHH----HHHHHCCCCEEEECCCCCHHH-H-----HHCCC
Q ss_conf 37899997987613521----1123333-21013334224799----987413671465203210055-4-----20012
Q gi|254780300|r 59 RTQTSFEVAGKLLGVHV----ININTKN-SAMKKGENIADTIA----TLNALRPNIIVIRHPYSGAVN-S-----LMHKI 123 (316)
Q Consensus 59 RTR~SFe~A~~~LGg~~----i~l~~~~-s~~~kgEs~~Dta~----vls~~~~d~iv~R~~~~~~~~-~-----~a~~~ 123 (316)
-|| |+.-...++-.+ ..++.+= .-++.+-.+-+-|. .|-.+-.++-|+-+.....-. . +....
T Consensus 69 ~~R--F~~~~~~l~~~~D~qi~~l~~~yl~~l~~~~~L~pGA~el~~~L~~~d~~l~ivtNG~~~~Q~~rl~~~gL~~Ff 146 (233)
T TIGR02254 69 LTR--FEELLKELNTEADEQILKLNKEYLEFLEEKARLLPGALELMEALQKKDLRLYIVTNGVREVQEKRLRKSGLAPFF 146 (233)
T ss_pred HHH--HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf 999--999998707767788999999999998732023700799999870077137888777066777887634772105
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC-CCCC
Q ss_conf 342111123456631223322222220122210001001035544330133446642013420553277532-2211
Q gi|254780300|r 124 KGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL-LPKD 199 (316)
Q Consensus 124 s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~-~~~~ 199 (316)
..+ ||+==-| .+=|-...=+. . .|+-|.+..-.+.+||| | .+|.|.++...|.+.....|..- .|.+
T Consensus 147 ~~v-~~SEd~G-~~KP~~~iF~~-a-Ler~~~~~k~~~L~vGD---~--~~aDi~Ga~naGl~~vw~n~~~~~~~~~ 214 (233)
T TIGR02254 147 DQV-LVSEDAG-IEKPDKKIFDY-A-LERMGKLKKEEVLMVGD---S--LEADIKGARNAGLDTVWLNPDRHPKPDD 214 (233)
T ss_pred HHE-EECHHHC-CCCCCHHHHHH-H-HHHCCCCCCCEEEEEEC---C--CHHHHHHHHHHCEEEEEECCCCCCCCCC
T ss_conf 144-4022214-55888567789-9-87178887231678607---8--0457876666140035517788888339
No 203
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=31.21 E-value=38 Score=14.56 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCCCCCCCEEECCCCCCCCHHHHHH-HHHHCCCC-EEEECCCCCCCCC
Q ss_conf 421111234566312233222222-20122210001001035544330133446-64201342-0553277532221
Q gi|254780300|r 125 GPSIINAGDGTHEHPSQALLDAFA-IRHFKGKISNLHIAICGDILHSRVARSDI-MLLNTMGA-RIRVIAPITLLPK 198 (316)
Q Consensus 125 ~ppVINag~~~~~HP~Q~LaDl~T-i~e~~g~l~~l~ia~vGD~~~~~v~~S~~-~~~~~~g~-~v~~~~P~~~~~~ 198 (316)
.+.||+++-|.. --|=||--+.. ++..+|.+.+.-|..+|. |+|..+.+ ..++-+|. .|.+.+|.+|.+.
T Consensus 227 ~ilVVQGaAGSG-KTtiALHRvAyLlY~~R~~l~~k~vlvl~P---N~vFleYis~VLPeLGe~~V~q~Tf~e~a~~ 299 (747)
T COG3973 227 KILVVQGAAGSG-KTTIALHRVAYLLYGYRGPLQAKPVLVLGP---NRVFLEYISRVLPELGEEGVVQETFEEWALA 299 (747)
T ss_pred CEEEEECCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCEEEECC---CHHHHHHHHHHCHHHCCCCEEECCHHHHHHH
T ss_conf 748995588887-135889999999853566246686599828---3899999987554416686365049998887
No 204
>TIGR00185 rRNA_methyl_2 RNA methyltransferase, TrmH family, group 2; InterPro: IPR004440 The RNA methyltransferase, TrmH family, group 2 are part of the trmH (spoU) family of rRNA methylases that are involved in tRNA and rRNA base modification.; GO: 0008173 RNA methyltransferase activity, 0009451 RNA modification.
Probab=30.87 E-value=36 Score=14.73 Aligned_cols=65 Identities=12% Similarity=0.240 Sum_probs=36.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCCCC--------CCCCCCHHHCC-----CCCCEEEEEE
Q ss_conf 010355443301334466420134205532775322211--21234--------33005845603-----6862210001
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD--ISNMG--------VEVFHDMQKGL-----KNVDVIMILR 225 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--~~~~~--------~~~~~d~~ea~-----~~aDvv~~~~ 225 (316)
|.|.+.+ +.|+.| -+..|+.+|+.++++.|=|..-+| ..-+| +...++.++-+ +.+++...+.
T Consensus 5 VLy~PeI-P~NTGN-I~R~Caat~~~LHLi~PlGF~~~DK~L~RAGLdyw~fv~~~~H~s~E~fle~~~~~~~nlf~lT~ 82 (161)
T TIGR00185 5 VLYEPEI-PPNTGN-IVRTCAATGTRLHLIKPLGFELDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQKGNLFLLTK 82 (161)
T ss_pred EEECCCC-CCCCCH-HHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHCCCCCEEEEEEEE
T ss_conf 7407889-788411-20101115862456605786207814231478744523235625568888633899716888840
Q ss_pred EC
Q ss_conf 13
Q gi|254780300|r 226 MQ 227 (316)
Q Consensus 226 ~~ 227 (316)
-|
T Consensus 83 ~G 84 (161)
T TIGR00185 83 KG 84 (161)
T ss_pred CC
T ss_conf 38
No 205
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=30.00 E-value=40 Score=14.43 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=15.0
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEE----EECCCCC
Q ss_conf 00010010355443301334466420134205----5327753
Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARI----RVIAPIT 194 (316)
Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v----~~~~P~~ 194 (316)
..|+.+..=||- -+.....-++..++.++ ..++|.+
T Consensus 128 ~~GlsiMvGG~~---~~~e~~~Pil~aia~~~~~~~~~~G~~G 167 (301)
T PRK09599 128 ERGYCLMIGGDK---EAVERLEPIFKALAPRAEDGYLHAGPVG 167 (301)
T ss_pred HCCCEEEECCCH---HHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 558613306989---9999989999998334577804578988
No 206
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=29.85 E-value=40 Score=14.42 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=74.1
Q ss_pred CCCHHHHHH-HHCCCCEEEECC-CCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC------CC---CCCC
Q ss_conf 224799987-413671465203-210055420012342111123456631223322222220122------21---0001
Q gi|254780300|r 91 IADTIATLN-ALRPNIIVIRHP-YSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK------GK---ISNL 159 (316)
Q Consensus 91 ~~Dta~vls-~~~~d~iv~R~~-~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~------g~---l~~l 159 (316)
+..++.-+. .+ ++=++--+ ++..+...+...-.|+|.|..+..+=+=.|.++= .++.+.. |- =.+-
T Consensus 58 ~~~~v~~ik~~~--~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~gaq~~~a-~~~~~~~~e~i~~gYiV~~p~~ 134 (240)
T COG1646 58 VDNVVEAIKERT--DLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGAQVEGA-KLVGKLGLEVIPEGYIVVNPDG 134 (240)
T ss_pred HHHHHHHHHHHC--CCCEEEECCCHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHH-HHHHHHHHEECCEEEEEECCCC
T ss_conf 999999997506--9988993588100572577689888851799640414566202-7887632111544899977997
Q ss_pred CEEECCCCCC-----CCHHHHHHHHHHCCCCEEEECC-----CCCCCCC----------CCCCCCCCCCCCHHHCCC-CC
Q ss_conf 0010355443-----3013344664201342055327-----7532221----------121234330058456036-86
Q gi|254780300|r 160 HIAICGDILH-----SRVARSDIMLLNTMGARIRVIA-----PITLLPK----------DISNMGVEVFHDMQKGLK-NV 218 (316)
Q Consensus 160 ~ia~vGD~~~-----~~v~~S~~~~~~~~g~~v~~~~-----P~~~~~~----------~~~~~~~~~~~d~~ea~~-~a 218 (316)
+++|+|+.+. --++.....+...||+.+..+. |..-.++ -+-++||+-.+.-.+-.+ +|
T Consensus 135 ~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agA 214 (240)
T COG1646 135 TVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGA 214 (240)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 13662355557898588999999999971985899980688899868899998614550898588498999999997179
Q ss_pred CEEEEEEECCHHH
Q ss_conf 2210001133123
Q gi|254780300|r 219 DVIMILRMQQERI 231 (316)
Q Consensus 219 Dvv~~~~~~~e~~ 231 (316)
|+|++-....|..
T Consensus 215 D~IVtG~iiee~~ 227 (240)
T COG1646 215 DTIVTGTIIEEDP 227 (240)
T ss_pred CEEEECCEEECCH
T ss_conf 9899770020087
No 207
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=29.24 E-value=24 Score=15.88 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHH-------------------------CCCCCC
Q ss_conf 714652032100554200123421111234566--31223322222220-------------------------122210
Q gi|254780300|r 104 NIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTH--EHPSQALLDAFAIR-------------------------HFKGKI 156 (316)
Q Consensus 104 d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~--~HP~Q~LaDl~Ti~-------------------------e~~g~l 156 (316)
+++++=-..-.....|-+.+-+| -||+ + -+ +-=.|+|-++.-+. ..+..|
T Consensus 259 N~v~CSks~~nlA~~m~~~YGIP-yf~~-S-FyGi~Dt~~aLr~~A~~fgd~~l~~RtE~li~~E~~~~~~~l~~yR~~L 335 (470)
T TIGR01283 259 NMVQCSKSMINLARKMEEKYGIP-YFEV-S-FYGIEDTSKALRDIAELFGDEELLKRTEELIAEEEAKIRPELEPYRERL 335 (470)
T ss_pred EEEECCHHHHHHHHHHHHHCCCC-EEEE-C-CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 33575236788999999646897-5872-1-4108889999999997639887999999999999999999999989973
Q ss_pred CCCCEEE-CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 0010010-3554433013344664201342055327753222112
Q gi|254780300|r 157 SNLHIAI-CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI 200 (316)
Q Consensus 157 ~~l~ia~-vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~ 200 (316)
+|.|+++ +|- ..=.=|++.++.-+||+|+..+-+.-.++|.
T Consensus 336 ~GKkaaiY~GG---a~KswSlv~Al~dLGMeVV~~GTqkg~~EDy 377 (470)
T TIGR01283 336 KGKKAAIYTGG---AVKSWSLVSALQDLGMEVVATGTQKGTEEDY 377 (470)
T ss_pred CCCEEEEECCC---HHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
T ss_conf 49889986586---4789999988845791799983007988899
No 208
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=29.12 E-value=41 Score=14.34 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=14.2
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 2100010010355443301334466420134205
Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187 (316)
Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v 187 (316)
++++|.+++.-| -+||.......+..+|+++
T Consensus 19 ~~l~g~~vaVqG---fGnVG~~~a~~l~~~Gakv 49 (217)
T cd05211 19 DSLEGLTVAVQG---LGNVGWGLAKKLAEEGGKV 49 (217)
T ss_pred CCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEE
T ss_conf 685799999989---8899999999999859989
No 209
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.94 E-value=42 Score=14.32 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=20.1
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 10001001035544330133446642013420553277
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAP 192 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316)
+|+|.+|+.-| -+||..-....+...|+++.++..
T Consensus 25 ~l~gk~VaIqG---~GnVG~~~A~~l~~~Gakvvv~d~ 59 (200)
T cd01075 25 SLEGKTVAVQG---LGKVGYKLAEHLLEEGAKLIVADI 59 (200)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 87899999989---879999999999967997999826
No 210
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.51 E-value=42 Score=14.27 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.7
Q ss_pred CCHHHHHHHHH
Q ss_conf 31223322222
Q gi|254780300|r 137 EHPSQALLDAF 147 (316)
Q Consensus 137 ~HP~Q~LaDl~ 147 (316)
+.|+-+|.-++
T Consensus 117 tNPvD~lt~i~ 127 (310)
T cd01337 117 SNPVNSTVPIA 127 (310)
T ss_pred ECCHHHHHHHH
T ss_conf 08347799999
No 211
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=28.47 E-value=42 Score=14.27 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHH------------------------HHHHHHHHHHHCCC
Q ss_conf 999999999999964420487752128976999960787337------------------------89999798761352
Q gi|254780300|r 19 DVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT------------------------QTSFEVAGKLLGVH 74 (316)
Q Consensus 19 el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRT------------------------R~SFe~A~~~LGg~ 74 (316)
+.+..++.|..+++...+... .++- ++=-.|+||=|.. | .+=..+..||.-
T Consensus 65 D~~aaleYA~rL~~l~~~~~d--~l~I--VMRvYfEKPRTtvGWKGli~DP~ldgs~~i~~Gl~~aR-~ll~~i~~lGlp 139 (351)
T PRK09261 65 DPKAALEYARRLAKLREELKD--KLEI--VMRVYFEKPRTTVGWKGLINDPDLDGSFDINKGLRIAR-KLLLDINELGLP 139 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHC--CEEE--EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHCCCC
T ss_conf 989999999999999998637--5799--98641047754567531145889889856777899999-999999865997
Q ss_pred C--CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 1--1123333210133342247999874136714652032100554200123421-11123456631223322222
Q gi|254780300|r 75 V--ININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS-IINAGDGTHEHPSQALLDAF 147 (316)
Q Consensus 75 ~--i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~pp-VINag~~~~~HP~Q~LaDl~ 147 (316)
+ -+|++-.-|- +.| +-+| .+|..|+.+.....++|...+.|. +=|+-+|. .|+..|.+
T Consensus 140 ~AtE~Ldp~~pqY-----~~D----liSw--~AIGART~ESQ~HRelASgLs~PVGfKN~TdG~----i~vAidai 200 (351)
T PRK09261 140 AATEFLDPITPQY-----IAD----LISW--GAIGARTTESQVHRELASGLSCPVGFKNGTDGN----IKVAIDAI 200 (351)
T ss_pred CHHHHHCCCCHHH-----HHH----HHHH--HHHCCCCCCCHHHHHHHCCCCCCEEECCCCCCC----HHHHHHHH
T ss_conf 2055643234377-----766----6665--431455333478898853788750113689874----89999999
No 212
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=27.96 E-value=43 Score=14.21 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHH------HHHCCC---------CCC--CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 013334224799987413671465203210055------420012---------342--111123456631223322222
Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVN------SLMHKI---------KGP--SIINAGDGTHEHPSQALLDAF 147 (316)
Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~------~~a~~~---------s~p--pVINag~~~~~HP~Q~LaDl~ 147 (316)
...=|.+-|++..|..|+++ -..|-......+ +..++. ..| |.+++-.+...-|..-=-|++
T Consensus 155 ~~~VE~~LDs~hai~~~~~~-R~~rp~~~s~~e~~~~~ee~~e~~~s~~~~lw~~~p~~~~~~~~~~~~~~P~ePeediL 233 (495)
T COG2719 155 VEEVERFLDSCHAIMEYGVD-RYKRPKKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEEDLL 233 (495)
T ss_pred HHHHHHHHHHHHHHHHHCCH-HHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHCCCCCCHHHHH
T ss_conf 89999999999999971750-20377423444623568888887624411355407787775433356218999278899
Q ss_pred HHHCCCC
Q ss_conf 2201222
Q gi|254780300|r 148 AIRHFKG 154 (316)
Q Consensus 148 Ti~e~~g 154 (316)
.+.|+.+
T Consensus 234 yFiEk~~ 240 (495)
T COG2719 234 YFIEKNS 240 (495)
T ss_pred HHHHHCC
T ss_conf 9998556
No 213
>pfam10593 Z1 Z1 domain. This uncharacterized domain was identified by Iyer and colleagues. It is found associated with a helicase domain of superfamily type II.
Probab=27.77 E-value=40 Score=14.43 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=31.9
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEE-CCCCCCCCCCC
Q ss_conf 10001001035544330133446642013420553-27753222112
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRV-IAPITLLPKDI 200 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~-~~P~~~~~~~~ 200 (316)
.++||.+.|.+- ++...-.++..+..||++... --+.-|++.+.
T Consensus 142 TleGL~vsYf~R--~s~~~DTL~QmgRwFGYR~gY~dlcRi~~t~~~ 186 (231)
T pfam10593 142 TLEGLTVSYFLR--TSKMADTLMQMGRWFGYRPGYEDLCRLYMTEDL 186 (231)
T ss_pred EECCEEEEEEEC--CCCHHHHHHHHCCCCCCCCCCCCCEEEECCHHH
T ss_conf 265707999706--864389999845546788665021567638899
No 214
>KOG0572 consensus
Probab=27.67 E-value=44 Score=14.18 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=57.5
Q ss_pred EEEECCCCCHHHHH--HCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHCCCC----CCCCCCEEECCC-CCCCC
Q ss_conf 46520321005542--00123421111-------234566312233222222201222----100010010355-44330
Q gi|254780300|r 106 IVIRHPYSGAVNSL--MHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRHFKG----KISNLHIAICGD-ILHSR 171 (316)
Q Consensus 106 iv~R~~~~~~~~~~--a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e~~g----~l~~l~ia~vGD-~~~~~ 171 (316)
+|+-.|+.+....+ |..+-.| .-- .|-+- =-|.|-+-++ .++.++| .++|.+|+.|-| +..++
T Consensus 294 vVi~VPdS~~~aAlgyA~~sG~p-y~e~l~rnrYvGRTF-I~P~q~iR~~-~V~~Kl~~l~~~~~GKrvvlVDDSIVRGt 370 (474)
T KOG0572 294 VVIPVPDSGTTAALGYAAKSGLP-YQEVLIRNRYVGRTF-IEPNQRIRQL-GVKKKLGPLRQNFEGKRVVLVDDSIVRGT 370 (474)
T ss_pred EEEECCCCCHHHHHHHHHHHCCC-HHHHHHHCCCCCCEE-CCCCHHHHHH-HHHHHCCCCHHHCCCCEEEEEECCEECCC
T ss_conf 58857985037888888870996-055200123135100-0764788886-47665053234407856999736542267
Q ss_pred HHHHHHHHHHCCCC---EEEECCCCCCCC
Q ss_conf 13344664201342---055327753222
Q gi|254780300|r 172 VARSDIMLLNTMGA---RIRVIAPITLLP 197 (316)
Q Consensus 172 v~~S~~~~~~~~g~---~v~~~~P~~~~~ 197 (316)
+..-.+.++.--|+ ++++++|.--.|
T Consensus 371 Ts~~IVkmlreaGAkeVh~riAsPpi~~p 399 (474)
T KOG0572 371 TSSPIVKMLREAGAKEVHIRIASPPIKYP 399 (474)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 53899999987588578988218864455
No 215
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=27.51 E-value=44 Score=14.16 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=76.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC--------CCCCCCCCCCCC
Q ss_conf 979876135211123333210133342247999874136714652032100554200123--------421111234566
Q gi|254780300|r 65 EVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK--------GPSIINAGDGTH 136 (316)
Q Consensus 65 e~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s--------~ppVINag~~~~ 136 (316)
..|...||....|+--+ .|.+.+....+.......+-+--|+...+..+....+ +--|++-.....
T Consensus 28 N~af~~lgl~~~Y~~~~------~~~l~~~i~~lr~~~~~G~nVTiP~K~~i~~~lD~ld~~A~~iGAVNTiv~~~g~l~ 101 (272)
T PRK12550 28 NYLYEALGLNFLYKAFT------TTDLTAAIGGVRALGIRGCAVSMPFKEACIPLVDELDPSAKAIESVNTIVNTDGHLK 101 (272)
T ss_pred HHHHHHCCCCEEEEEEC------HHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCHHHHHHCCEEEEEEECCEEE
T ss_conf 99999879992998637------877999999887579988998643699999985436888997275547995599899
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCCCC-CCCCCCCCCCHHHC
Q ss_conf 3122332222222012221000100103554433013344664201342-055327753222112-12343300584560
Q gi|254780300|r 137 EHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPKDI-SNMGVEVFHDMQKG 214 (316)
Q Consensus 137 ~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~~~-~~~~~~~~~d~~ea 214 (316)
-|-|-... +....+.++.-.+.+++.+|- +-+++|-+.++...|+ +++++.-..-..+.. ...+.+. .++..
T Consensus 102 G~NTD~~G-~~~~l~~~~~~~~~~~lilGa---GGaarai~~aL~~~G~~~i~I~nR~~~~a~~L~~~~~~~~--~~~~~ 175 (272)
T PRK12550 102 AYNTDYIA-IAQLLEEYQVPPDAVVALRGS---GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW--RPDLG 175 (272)
T ss_pred EEECCHHH-HHHHHHHCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCC--CCCCC
T ss_conf 99377899-999999708886773899736---2338999999997699879999899899999998739733--46433
Q ss_pred CCCCCEEE-EEEEC
Q ss_conf 36862210-00113
Q gi|254780300|r 215 LKNVDVIM-ILRMQ 227 (316)
Q Consensus 215 ~~~aDvv~-~~~~~ 227 (316)
...+|+|+ +++++
T Consensus 176 ~~~~dliINaTpvG 189 (272)
T PRK12550 176 GIEADLLVNVTPIG 189 (272)
T ss_pred CCCCCEEEECCCCC
T ss_conf 46689799667665
No 216
>pfam11339 DUF3141 Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.14 E-value=32 Score=15.08 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCC--CCCCCCEEEC
Q ss_conf 01234211112345-66312233222222201222--1000100103
Q gi|254780300|r 121 HKIKGPSIINAGDG-THEHPSQALLDAFAIRHFKG--KISNLHIAIC 164 (316)
Q Consensus 121 ~~~s~ppVINag~~-~~~HP~Q~LaDl~Ti~e~~g--~l~~l~ia~v 164 (316)
+....|.||=|-.| +..-|-|||-=+..++..-- ...|.+|+|+
T Consensus 294 r~IrsPIvvFaS~GDNITPPqQAL~WI~dlY~~~~ei~a~gQ~IVY~ 340 (581)
T pfam11339 294 RNIRSPIVVFCSYGDNITPPQQALNWIADLYADVEEIRAHGQTIVYC 340 (581)
T ss_pred HHCCCCEEEEECCCCCCCCCHHHHCCHHHHCCCHHHHHHCCCEEEEE
T ss_conf 32678889993368889996577562887648999998589879998
No 217
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.12 E-value=45 Score=14.11 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=56.1
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 79876135211123333210133342247999874136714652032100554200123421111234566312233222
Q gi|254780300|r 66 VAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLD 145 (316)
Q Consensus 66 ~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaD 145 (316)
..-.+-|.|+++++........-|.....+..+..-..-=+++-.++...++...+.+..+|+||--.... .-+-.
T Consensus 32 ~~Q~eaGA~~LDVN~g~~~~de~~~m~~~v~~iq~~~~~Pl~iDS~~~~aiEaaLk~~~Gr~iINSis~e~----er~~~ 107 (268)
T PRK07535 32 LRQVEAGANYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPEAIEAGLKVAKGRPLINSVSAEE----ERLEA 107 (268)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCEEEEECCCH----HHHHH
T ss_conf 99998499989960898774689999999999973389996761898999999999779997266003880----56999
Q ss_pred HHHHHCCCC-CCCCCCEEECCCC----CCCCHHHHHHHHHHCCCCE
Q ss_conf 222201222-1000100103554----4330133446642013420
Q gi|254780300|r 146 AFAIRHFKG-KISNLHIAICGDI----LHSRVARSDIMLLNTMGAR 186 (316)
Q Consensus 146 l~Ti~e~~g-~l~~l~ia~vGD~----~~~~v~~S~~~~~~~~g~~ 186 (316)
++.+-.+.| .+=++.+-=-|=. ..-.++...+..+..+|+.
T Consensus 108 i~pLakkyga~vI~L~~de~Gip~tae~R~~ia~~i~~~a~~~Gi~ 153 (268)
T PRK07535 108 VLPLVKKYNAPVVALTMDDTGIPKDAEVRLAVAKKLVEKAADFGIP 153 (268)
T ss_pred HHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998499799994289999999999999999999999985998
No 218
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=26.67 E-value=46 Score=14.06 Aligned_cols=80 Identities=9% Similarity=0.086 Sum_probs=48.0
Q ss_pred CEEEEEEECCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH---
Q ss_conf 769999607873----3789999798761352111233332101333422479998741367146520321005542---
Q gi|254780300|r 47 LTQINLFLETST----RTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSL--- 119 (316)
Q Consensus 47 k~~~~lF~kpSt----RTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~--- 119 (316)
..+++.+...+. +-+-.|+.++..+|..++..+++...-. .+.+ +..+-..++|+|++--.+...+...
T Consensus 26 ~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~dA~~D~~~---Qi~q-Ie~~I~qgvdaIiv~p~D~~al~~~v~~ 101 (330)
T PRK10355 26 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEET---QMSQ-IENMINRGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH---HHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 67999906888868999999999999975998999718999899---9999-9999985999999969987888999999
Q ss_pred HCCCCCCCCCCC
Q ss_conf 001234211112
Q gi|254780300|r 120 MHKIKGPSIINA 131 (316)
Q Consensus 120 a~~~s~ppVINa 131 (316)
++..-+| ||.-
T Consensus 102 A~~aGIP-VI~~ 112 (330)
T PRK10355 102 AKQEGIK-VLAY 112 (330)
T ss_pred HHHCCCE-EEEE
T ss_conf 9987994-9995
No 219
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.48 E-value=35 Score=14.77 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=63.2
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCC
Q ss_conf 99607873378999979876135211123333210133342247999874136714652032100554200123421111
Q gi|254780300|r 51 NLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIIN 130 (316)
Q Consensus 51 ~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVIN 130 (316)
+++.-++-.+|..++. .|. .-+-++-+.|.++-|..-++|+|++-+...+.+.+-.+.....|+|+
T Consensus 38 i~~~s~~f~~~~~~q~----~~~----------w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllh 103 (230)
T COG1794 38 LLLYSVDFPEIETLQR----AGE----------WDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLH 103 (230)
T ss_pred HHEECCCCCCHHHHHC----CCC----------CCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEH
T ss_conf 3122688655999873----676----------56589999999999996599989970773789999999854997330
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHH-HHHHCCCCEEEECCCCCC
Q ss_conf 23456631223322222220122210001001035544330133446-642013420553277532
Q gi|254780300|r 131 AGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDI-MLLNTMGARIRVIAPITL 195 (316)
Q Consensus 131 ag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~-~~~~~~g~~v~~~~P~~~ 195 (316)
.-+- |..+.... .-.+++..|-- .-+.+.+- ..+...| +.++.|+.-
T Consensus 104 Iida-------------Ta~~ik~~-g~kkvgLLgT~--~Tm~~~fY~~~l~~~g--ievvvPdd~ 151 (230)
T COG1794 104 IIDA-------------TAKAIKAA-GAKKVGLLGTR--FTMEQGFYRKRLEEKG--IEVVVPDDD 151 (230)
T ss_pred HHHH-------------HHHHHHHC-CCCEEEEEECC--CHHHHHHHHHHHHHCC--CEEECCCHH
T ss_conf 7899-------------99998765-88615886130--0577689999999779--647567778
No 220
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=26.39 E-value=41 Score=14.34 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCH--HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCCCCCCCEEECCCC
Q ss_conf 2247999874136714652032100--5542001234211112345663122332222-222012221000100103554
Q gi|254780300|r 91 IADTIATLNALRPNIIVIRHPYSGA--VNSLMHKIKGPSIINAGDGTHEHPSQALLDA-FAIRHFKGKISNLHIAICGDI 167 (316)
Q Consensus 91 ~~Dta~vls~~~~d~iv~R~~~~~~--~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl-~Ti~e~~g~l~~l~ia~vGD~ 167 (316)
+.-|..-+-.- +|+++=-++..-- -..+=.....+.|+-+|. .| .++|+ |.-.-+...--|..++-+.-+
T Consensus 69 v~Gtiedll~~-aDvVvDcTP~g~G~~Nk~~Y~~~g~kaIfQGGE---k~---~va~~sFna~~Ny~~a~Gk~~vrvvSC 141 (338)
T PRK04207 69 VAGTIEDLLEK-ADIVVDATPGGVGAKNKPLYEKAGVKAIFQGGE---KA---EVAEVSFNALANYEEAIGKDYVRVVSC 141 (338)
T ss_pred CCCCHHHHHHC-CCEEEECCCCCCCCCCHHHHHHCCCCEEEECCC---CC---CCCCCEEEEECCHHHHCCCCCEEEEEE
T ss_conf 66768897521-899998999764400227688759837996588---76---767750673014577638763799653
Q ss_pred CCCCHHHHHHHHHHCCCC
Q ss_conf 433013344664201342
Q gi|254780300|r 168 LHSRVARSDIMLLNTMGA 185 (316)
Q Consensus 168 ~~~~v~~S~~~~~~~~g~ 185 (316)
.-+..++.+--+-..+|.
T Consensus 142 NTTgL~R~l~~L~~~~gi 159 (338)
T PRK04207 142 NTTGLCRTLYPLREAFGV 159 (338)
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 203457889999875182
No 221
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=26.20 E-value=46 Score=14.01 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=30.2
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 6999960787337899997987613521112333321013334224799987413671465
Q gi|254780300|r 48 TQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVI 108 (316)
Q Consensus 48 ~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~ 108 (316)
-++.+|+++|-|. +|.+.|..-.....- ......+-..++..+...++.....|++-+
T Consensus 24 ~iGfif~~~SpR~-i~~~~a~~i~~~~~~--~~~~VgVfvn~~~~~i~~~~~~~~ld~vQl 81 (207)
T PRK13958 24 AIGFIHYEKSKRH-QTITQIKKLASAVPN--HIDKVCVMVNPDLTTIEHVLSNTSINTIQL 81 (207)
T ss_pred EEEEECCCCCCCC-CCHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf 9999557899986-599999999986554--688699994697999999998579977986
No 222
>PRK05086 malate dehydrogenase; Provisional
Probab=26.10 E-value=47 Score=13.99 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.7
Q ss_pred CCHHHHHHHHH
Q ss_conf 31223322222
Q gi|254780300|r 137 EHPSQALLDAF 147 (316)
Q Consensus 137 ~HP~Q~LaDl~ 147 (316)
+.|+-+|+-+.
T Consensus 118 sNPvD~mt~ia 128 (312)
T PRK05086 118 TNPVNTTVAIA 128 (312)
T ss_pred CCCHHHHHHHH
T ss_conf 48327789999
No 223
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.09 E-value=47 Score=13.99 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCCCCCCCCC
Q ss_conf 37899997987613521112333321013-33422479998741367146520321005542---001234211112
Q gi|254780300|r 59 RTQTSFEVAGKLLGVHVININTKNSAMKK-GENIADTIATLNALRPNIIVIRHPYSGAVNSL---MHKIKGPSIINA 131 (316)
Q Consensus 59 RTR~SFe~A~~~LGg~~i~l~~~~s~~~k-gEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~---a~~~s~ppVINa 131 (316)
+-+-.+|.++..||..+.+++++.. ..+ -+-+++ +-.-++|+|++-..+...+... +...-+| ||.-
T Consensus 16 ~~~~Gae~aA~e~Gv~v~~~~a~~D-~~~Q~~~Ie~----~I~~gvD~Iiv~p~d~~a~~~~~~~A~~aGIp-VV~~ 86 (272)
T cd06313 16 QGKQAADEAGKLLGVDVTWYGGALD-AVKQVAAIEN----MASQGWDFIAVDPLGIGTLTEAVQKAIARGIP-VIDM 86 (272)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHH----HHHCCCCEEEEECCCHHHHHHHHHHHHHCCCE-EEEE
T ss_conf 9999999999981998999869999-9999999999----99859999999688878999999999986998-9997
No 224
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.73 E-value=47 Score=13.95 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHH-----------------------HHHHHHHHHHHCCCC
Q ss_conf 999999999999964420487752128976999960787337-----------------------899997987613521
Q gi|254780300|r 19 DVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT-----------------------QTSFEVAGKLLGVHV 75 (316)
Q Consensus 19 el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRT-----------------------R~SFe~A~~~LGg~~ 75 (316)
+.+.-++.|..+++...+... .++- ++=-.|+||=|.. -=.+=..+..||.-+
T Consensus 65 D~~aaleYA~rL~~l~~~~~d--~l~I--VMRvYfEKPRTtvGWKGli~DP~ldgs~~i~~Gl~~aR~ll~~i~~lGlp~ 140 (349)
T PRK12756 65 DTDAALDYATRLQALREQYQD--RLEI--VMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQVNELGLPT 140 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHC--CEEE--EEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 979999999999999997226--6499--986420478646675400458898898577678999999999998739961
Q ss_pred --CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf --1123333210133342247999874136714652032100554200123421-11123456631223322222
Q gi|254780300|r 76 --ININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS-IINAGDGTHEHPSQALLDAF 147 (316)
Q Consensus 76 --i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~pp-VINag~~~~~HP~Q~LaDl~ 147 (316)
-+|++-.-|. +.| +-+| .+|..|+.+.....++|...+.|. .=|+-+|. .|+..|.+
T Consensus 141 AtE~Ldp~~pqY-----~~D----liSw--~AIGARTtESQ~HRelaSgLs~PVGfKN~TdG~----i~vaidai 200 (349)
T PRK12756 141 ATEFLDMVTGQY-----IAD----LISW--GAIGARTTESQIHREMASALSCPVGFKNGTDGN----IRIAVDAI 200 (349)
T ss_pred HHHHHCCCCHHH-----HHH----HHHH--HHCCCCCCCCHHHHHHHCCCCCCEEECCCCCCC----HHHHHHHH
T ss_conf 134525542444-----332----4544--330556432278898851688750223689874----89999999
No 225
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=25.39 E-value=48 Score=13.91 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHCCCCCCCCCCEEECCCCC-CCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 20122210001001035544-3301334466420134205532
Q gi|254780300|r 149 IRHFKGKISNLHIAICGDIL-HSRVARSDIMLLNTMGARIRVI 190 (316)
Q Consensus 149 i~e~~g~l~~l~ia~vGD~~-~~~v~~S~~~~~~~~g~~v~~~ 190 (316)
+-++|++++|.++..|-|+. -+.+.+.-+.++...|.++..+
T Consensus 132 ~s~nfa~V~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~~ 174 (201)
T PRK02277 132 ISRNFASVAGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVAV 174 (201)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 1341034378789999702377824999999999869979999
No 226
>PRK10200 putative racemase; Provisional
Probab=25.37 E-value=35 Score=14.80 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHCCCCEEEECCCCCH-HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 3342247999874136714652032100-554200123421111234566312233222222201222100010010355
Q gi|254780300|r 88 GENIADTIATLNALRPNIIVIRHPYSGA-VNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGD 166 (316)
Q Consensus 88 gEs~~Dta~vls~~~~d~iv~R~~~~~~-~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD 166 (316)
++-+.+.++.|.+.++|++++-+...+. ..++.+..++| +||..+.. ++.+.. . .-.++...|-
T Consensus 61 ~~~L~~~a~~Le~aGAd~i~i~cNTaH~~~d~i~~~~~iP-~l~i~~~t----~~~i~~------~----g~~~VglLgT 125 (230)
T PRK10200 61 GDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLP-FLHIADAT----GRAIAG------A----GMTRVALLGT 125 (230)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEHHHHH----HHHHHH------C----CCCEEEEECC
T ss_conf 9999999999998499999964747899999999756998-73189999----999997------5----9985898514
Q ss_pred CCCCCHHHHHHH--HH-HCCCCEEEECCCCC
Q ss_conf 443301334466--42-01342055327753
Q gi|254780300|r 167 ILHSRVARSDIM--LL-NTMGARIRVIAPIT 194 (316)
Q Consensus 167 ~~~~~v~~S~~~--~~-~~~g~~v~~~~P~~ 194 (316)
.-+..|.+. .+ ..+|.++. .|++
T Consensus 126 ---~~Tm~~~~Y~~~l~~~~gi~~v--~P~~ 151 (230)
T PRK10200 126 ---RYTMEQDFYRGRLTEQFSINCL--IPEA 151 (230)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEE--CCCH
T ss_conf ---5666616889999985798586--7999
No 227
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=25.04 E-value=15 Score=17.12 Aligned_cols=73 Identities=23% Similarity=0.363 Sum_probs=41.7
Q ss_pred HHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH------HHH---HHHHHCCCCCCCCCCEEECCCCC
Q ss_conf 874136714652032100554200123421111234566312233------222---22220122210001001035544
Q gi|254780300|r 98 LNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQA------LLD---AFAIRHFKGKISNLHIAICGDIL 168 (316)
Q Consensus 98 ls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~------LaD---l~Ti~e~~g~l~~l~ia~vGD~~ 168 (316)
|.+| |+-|.++-...+.+ ......+..|| | . ||... ..= +||..+.-|.|++-....-|= +
T Consensus 48 lAGy-C~~I~v~i~~dgsv-~V~DnGRGIPV----d--I-Hp~eGakqGRe~SA~EvVlT~LHAGGKFD~~sYKVSGG-L 117 (818)
T TIGR01059 48 LAGY-CDTINVTINDDGSV-TVEDNGRGIPV----D--I-HPEEGAKQGREISAVEVVLTVLHAGGKFDKDSYKVSGG-L 117 (818)
T ss_pred HCCC-CCEEEEEEECCCEE-EEEECCCCCCC----C--C-CCCCCCCCCCCCCCEEEEEEEECCCEEECCCCEEEECC-E
T ss_conf 0661-24148999628769-99858858874----3--0-67687878885660001220005750015880478675-6
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 3301334466420
Q gi|254780300|r 169 HSRVARSDIMLLN 181 (316)
Q Consensus 169 ~~~v~~S~~~~~~ 181 (316)
|+ |--|-++||+
T Consensus 118 HG-VGvSVVNALS 129 (818)
T TIGR01059 118 HG-VGVSVVNALS 129 (818)
T ss_pred EE-CCEEEEEECC
T ss_conf 50-3279996117
No 228
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=24.84 E-value=49 Score=13.85 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=71.2
Q ss_pred HHCCHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 238999999999999999---96442048775212897699996078733789999798761352111233332101333
Q gi|254780300|r 13 KDLSMQDVNYLLDRANEY---FQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGE 89 (316)
Q Consensus 13 ~dl~~~el~~ll~~A~~~---k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgE 89 (316)
.+++++-+++|+.+-..- -++...+ +..++-.+++ +.+==+ -+---=|..-...-|-.+..++.++ +.
T Consensus 64 ~gv~pdliEdilRrimreSy~~e~~~~~-~~~~~~~~~i-~IIGG~--G~mG~~F~~~f~~sGy~V~ild~~d--w~--- 134 (374)
T PRK11199 64 LGVPPDLIEDVLRRVMRESYSSENDKGF-KTLNPDLRPV-VIVGGK--GQLGRLFAKMLTLSGYQVRILEKDD--WD--- 134 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEE-EEEECC--CCHHHHHHHHHHHCCCEEEEECCCC--CC---
T ss_conf 4988689999999999999988887502-2028998717-998079--8277999999996798799616444--53---
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCHHHHHHC--CCCCCCCCCCCCCCCCCHHHHHHHHH-----HHHCCCC----CCCC
Q ss_conf 42247999874136714652032100554200--12342111123456631223322222-----2201222----1000
Q gi|254780300|r 90 NIADTIATLNALRPNIIVIRHPYSGAVNSLMH--KIKGPSIINAGDGTHEHPSQALLDAF-----AIRHFKG----KISN 158 (316)
Q Consensus 90 s~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~--~~s~ppVINag~~~~~HP~Q~LaDl~-----Ti~e~~g----~l~~ 158 (316)
.+..+-. .+|++++-.|-+....-..+ +.+.-.++-=..+-..-|.+++.... -+.=-|| ++.|
T Consensus 135 ----~~~~~~~-~advViVsVPI~~T~~VI~~l~~l~~~~lL~DiTSvK~~Pl~aMl~~h~gpV~GlHPMFGP~v~sl~~ 209 (374)
T PRK11199 135 ----RADDILA-DAGMVIVSVPIHLTEEVIEKLPPLPEDCILVDLTSVKNGPLQAMLAAHSGPVLGLHPMFGPDVGSLAK 209 (374)
T ss_pred ----CHHHHHH-CCCEEEEEECHHHHHHHHHHCCCCCCCCEEEECHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----4898871-79989998145889999985778999868986100427899999985689850227787999644478
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 1001035544330133446642013420553277532
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316)
..|++|. .++..-..-++..+...|+++..+.|++.
T Consensus 210 QvVV~c~-gr~~e~~~wl~~~~~~~Ga~l~~~~~~eH 245 (374)
T PRK11199 210 QVVVVCD-GRQPEAYQWLLEQIQIWGARLHRISAVEH 245 (374)
T ss_pred CEEEECC-CCCHHHHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 7699889-99837789999999984878998688888
No 229
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=24.77 E-value=49 Score=13.84 Aligned_cols=90 Identities=12% Similarity=0.204 Sum_probs=50.5
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECC--CCCC-CCCCCCCCCCCCC----CCHHHCCCCCCEEEEEEECCHHH
Q ss_conf 100103554433013344664201342055327--7532-2211212343300----58456036862210001133123
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIA--PITL-LPKDISNMGVEVF----HDMQKGLKNVDVIMILRMQQERI 231 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~--P~~~-~~~~~~~~~~~~~----~d~~ea~~~aDvv~~~~~~~e~~ 231 (316)
-+++.+|- +-|.---...+.-+|++|++.. ++.+ ..++.-+..+... ..++++++.+|+++-....-
T Consensus 169 ~kv~iiGG---GvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp--- 242 (371)
T COG0686 169 AKVVVLGG---GVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP--- 242 (371)
T ss_pred CCEEEECC---CCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCEEEEEEEEC---
T ss_conf 60899877---612406999972368706999527788764067657666999758999998743126798888845---
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEE
Q ss_conf 33444455542023575889998379985995
Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316)
+.+ .+--|++++++.++|.+++.
T Consensus 243 -gak--------aPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 243 -GAK--------APKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -CCC--------CCEEHHHHHHHHCCCCCEEE
T ss_conf -887--------86010699997447985899
No 230
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=23.73 E-value=52 Score=13.71 Aligned_cols=88 Identities=23% Similarity=0.370 Sum_probs=49.9
Q ss_pred EEEECCCCCHHHHH--HCCCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCCC
Q ss_conf 46520321005542--00123421111-------2345663122332222222012----22100010010355-44330
Q gi|254780300|r 106 IVIRHPYSGAVNSL--MHKIKGPSIIN-------AGDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHSR 171 (316)
Q Consensus 106 iv~R~~~~~~~~~~--a~~~s~ppVIN-------ag~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~~ 171 (316)
+|+=.|+.+....+ |+.+..| .-. .|-+-. -|+| -++ ..+-+ +..++|.+|+.|-| +..++
T Consensus 274 vVi~VPdSg~~aa~Gya~~~gip-~~~glikn~y~gRtFI-~P~q--R~~-~v~~Kl~~~~~~i~gK~vvlvDDSIVRGt 348 (442)
T PRK08341 274 VVIAVPDSGRTAALGFAHESGIP-YMEGLIKNRYIGRTFI-MPSG--REL-KVKLKLSPVREVINGKRVVLVDDSIVRGT 348 (442)
T ss_pred EEEECCCCHHHHHHHHHHHCCCC-HHHHEEECCCCCCCCC-CCCC--HHH-CEEEEEEEEEEEECCCCEEEEECCEEECC
T ss_conf 89962897499999999862995-2430000012155443-8873--002-10446501000127981499614341054
Q ss_pred HHHHHHHHHHCCCC---EEEECCCCCCCCC
Q ss_conf 13344664201342---0553277532221
Q gi|254780300|r 172 VARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316)
Q Consensus 172 v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316)
+.+..+.++...|+ ++++++|+-..|-
T Consensus 349 T~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC 378 (442)
T PRK08341 349 TMKRIVKMLRDAGAREVHVRIASPPIRYPC 378 (442)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 299999999976998899996899857777
No 231
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.72 E-value=52 Score=13.71 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=49.8
Q ss_pred CCCCCCCCEEECCCCCCCCHHHHHHHHHHC----C-CCEEEECCCCCCCCCC-------CCCCC----CCC--CCCHHHC
Q ss_conf 221000100103554433013344664201----3-4205532775322211-------21234----330--0584560
Q gi|254780300|r 153 KGKISNLHIAICGDILHSRVARSDIMLLNT----M-GARIRVIAPITLLPKD-------ISNMG----VEV--FHDMQKG 214 (316)
Q Consensus 153 ~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~----~-g~~v~~~~P~~~~~~~-------~~~~~----~~~--~~d~~ea 214 (316)
...=+..++++||-+..--=...++.+++. + ++++.+++|..-.|+. +...+ ++. +.|+.+.
T Consensus 288 ~~~~~~~~v~~vgRv~p~Kdi~tlI~A~~~v~~~~p~~rl~I~Gp~d~~~~y~~ec~~lv~~lgL~~~V~F~G~~dv~~~ 367 (475)
T cd03813 288 RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEY 367 (475)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHH
T ss_conf 66789988999970111669999999999999868983999977998885899999999998299872798387898999
Q ss_pred CCCCCEEEEEEECCHHHHHHHH
Q ss_conf 3686221000113312333444
Q gi|254780300|r 215 LKNVDVIMILRMQQERIPRSLI 236 (316)
Q Consensus 215 ~~~aDvv~~~~~~~e~~~~~~~ 236 (316)
+..+|+++..|+ +|+++-...
T Consensus 368 l~~~Dv~vl~S~-~Eg~plvll 388 (475)
T cd03813 368 LPKLDVLVLTSI-SEGQPLVIL 388 (475)
T ss_pred HHHCCEEEECCC-CCCCCHHHH
T ss_conf 985799996573-346757999
No 232
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=23.65 E-value=52 Score=13.70 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=26.0
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 77774178223899999999999999996442
Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKS 35 (316)
Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~ 35 (316)
.+.+|+-++.|++.+++..++..+.++.+.-.
T Consensus 24 iPk~h~~~l~dl~~~~~~~l~~~~~~~~~~l~ 55 (86)
T cd00468 24 CPKRHVETLPDLDEALLADLVITAQRVAAELE 55 (86)
T ss_pred ECCHHHCCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 70224199346999999999999999999999
No 233
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=23.52 E-value=52 Score=13.69 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH---CCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 111123456631223322222220---1222-10001001035544330133446642013420553277
Q gi|254780300|r 127 SIINAGDGTHEHPSQALLDAFAIR---HFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAP 192 (316)
Q Consensus 127 pVINag~~~~~HP~Q~LaDl~Ti~---e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316)
|+-.+|+... -|--+..=++.++ +.+| +|+|.+|+.-| -+||..-.++.+...|+++..+.-
T Consensus 173 p~~~GGS~~r-~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG---~GNVg~~aa~~l~~~GAkvv~~sd 238 (411)
T COG0334 173 PLELGGSLGR-SEATGYGVFYAIREALKALGDDLEGARVAVQG---FGNVGQYAAEKLHELGAKVVAVSD 238 (411)
T ss_pred CCCCCCCCCC-CCCCCEEEHHHHHHHHHHCCCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 6314677999-86510330799999999817776887899977---628999999999974997999976
No 234
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=23.36 E-value=52 Score=13.67 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCCEEEECCCCCHH---HHHHCCCC-CCCCCCCCCCCC
Q ss_conf 2479998741367146520321005---54200123-421111234566
Q gi|254780300|r 92 ADTIATLNALRPNIIVIRHPYSGAV---NSLMHKIK-GPSIINAGDGTH 136 (316)
Q Consensus 92 ~Dta~vls~~~~d~iv~R~~~~~~~---~~~a~~~s-~ppVINag~~~~ 136 (316)
.|....+. .+|++++-.|++..- ..+..+.. ..++|++.=|..
T Consensus 74 ~dl~~~~~--~ad~ii~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle 120 (342)
T TIGR03376 74 PDLVEAAK--GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred CCHHHHHH--CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEE
T ss_conf 68999983--698899966869999999999854588873898423444
No 235
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=23.25 E-value=53 Score=13.65 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCC-CC-EEEECCCCCC----CCCCC---CCCCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 01001035544330133446642013-42-0553277532----22112---1234330058456036862210001133
Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTM-GA-RIRVIAPITL----LPKDI---SNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~-g~-~v~~~~P~~~----~~~~~---~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
..+++.+|- +.-++..+.++... +. ++.+..+..- +.+.. .+..++.+.++++++.+||+|++.....
T Consensus 118 ~~~l~iiG~---G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~e~av~~aDiI~taT~s~ 194 (302)
T PRK06407 118 VENFTIIGS---GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD 194 (302)
T ss_pred CCEEEEEEE---HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCEEEEECCCC
T ss_conf 878999966---59999999999974077389998088899999999986440995799489999983499999941898
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC---CCCCCCCCCCHHHHCCCCCHH
Q ss_conf 1233344445554202357588999837998599558---998768744767976997016
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP---GPINRNYEISSSVADGSQSII 286 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc---LP~~Rg~Ev~~~v~d~~~s~v 286 (316)
+-. +..+++ ++.+-+--. .|-. .|++++++..-..+|
T Consensus 195 ~Pv----------------~~~~~l---~~g~hi~aiGa~~p~~--~Eld~~ll~~a~~vv 234 (302)
T PRK06407 195 TPI----------------FNRKYL---GDEYHVNLAGSNYPNR--REAEHSVLNDADIVV 234 (302)
T ss_pred CCC----------------CCHHHC---CCCCEEEEECCCCCCC--CCCCHHHHHHCCEEE
T ss_conf 867----------------158887---9994899637999985--307999996199999
No 236
>CHL00183 petJ cytochrome c553; Provisional
Probab=23.10 E-value=28 Score=15.40 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCCCCCCCCCHHHHCCCCCHHHHHHHHH
Q ss_conf 9987687447679769970168687756
Q gi|254780300|r 266 GPINRNYEISSSVADGSQSIIQYQVEMG 293 (316)
Q Consensus 266 LP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nr 293 (316)
||+..+ .++++-+..=-..|++|||++
T Consensus 81 Mpaf~~-~Ls~~ei~~VA~YV~~qAe~g 107 (108)
T CHL00183 81 MPAFGG-RLSDSDIEDVANYVLSQSEKG 107 (108)
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHHHCC
T ss_conf 851015-589899999999999998766
No 237
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=23.05 E-value=50 Score=13.77 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999964
Q gi|254780300|r 19 DVNYLLDRANEYFQK 33 (316)
Q Consensus 19 el~~ll~~A~~~k~~ 33 (316)
.|+.|++.|.+++.+
T Consensus 3 ~IeeLi~kA~eLk~~ 17 (203)
T COG0856 3 NIEELIKKARELKSK 17 (203)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 589999999999877
No 238
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=22.82 E-value=54 Score=13.60 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=38.0
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCC--CCEEE-ECCCCCCCCC-CCCCCCCCCCCCHHHCCC--CCCEEEEEEE
Q ss_conf 1001035544330133446642013--42055-3277532221-121234330058456036--8622100011
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTM--GARIR-VIAPITLLPK-DISNMGVEVFHDMQKGLK--NVDVIMILRM 226 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~--g~~v~-~~~P~~~~~~-~~~~~~~~~~~d~~ea~~--~aDvv~~~~~ 226 (316)
++|+.+|= ++...-.+..+... ++++. ++.|..-..+ -....++..+.+.++.++ +.|+|+....
T Consensus 1 iki~iiG~---G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~v~I~tp 71 (120)
T pfam01408 1 LRVGIVGA---GKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGVPAYSDLEELLADPDVDAVSVATP 71 (120)
T ss_pred CEEEEEEC---HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHHCCCCCEEEECCC
T ss_conf 98999907---799999999998559997899998299999999999839967886999973778898999087
No 239
>pfam10340 DUF2424 Protein of unknown function (DUF2424). This is a family of proteins conserved in yeasts. The function is not known.
Probab=22.72 E-value=54 Score=13.58 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-----EEEECCC
Q ss_conf 63122332222222012221000100103554433013344664201342-----0553277
Q gi|254780300|r 136 HEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-----RIRVIAP 192 (316)
Q Consensus 136 ~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-----~v~~~~P 192 (316)
+.-|+|.+--+.|....-....-.+|..+||..++|.+-|+..-+++.+. +..+++|
T Consensus 172 ~~yP~Ql~e~l~~Y~~lv~~~G~kni~LmGDSAGGNL~L~~l~yL~~~~~~~~Pk~~i~ISP 233 (374)
T pfam10340 172 YTYPLQVLQCLAVYDYLTLTKGCKNVTLMGDSAGGNLVLNILLYLHKCNKVVLPKKAIAISP 233 (374)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 86616899999999999870576169997237762378999999986397658871488646
No 240
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.68 E-value=54 Score=13.58 Aligned_cols=15 Identities=13% Similarity=-0.208 Sum_probs=10.0
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 976997016868775
Q gi|254780300|r 278 VADGSQSIIQYQVEM 292 (316)
Q Consensus 278 v~d~~~s~v~~Qa~N 292 (316)
|+-+|-|.-|+|=+|
T Consensus 456 VLLSPacaSfD~f~n 470 (487)
T PRK03369 456 VLLAPAGASFDQFTG 470 (487)
T ss_pred EEECCHHHCHHCCCC
T ss_conf 997955534103079
No 241
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=22.55 E-value=36 Score=14.75 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred HHHHHHHCCCC-CCCCCCEEECCCCCCC--CHHHHHHHHHHCCCCEEEECCCCCCCCCC--C-----C-CCCCCCC----
Q ss_conf 22222201222-1000100103554433--01334466420134205532775322211--2-----1-2343300----
Q gi|254780300|r 144 LDAFAIRHFKG-KISNLHIAICGDILHS--RVARSDIMLLNTMGARIRVIAPITLLPKD--I-----S-NMGVEVF---- 208 (316)
Q Consensus 144 aDl~Ti~e~~g-~l~~l~ia~vGD~~~~--~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--~-----~-~~~~~~~---- 208 (316)
+.+.|+.|.-- ..+|+-|..=||--++ |.+|-+..-+..-|+- -+|--+...||- . . -+.|++|
T Consensus 56 t~lv~vve~~sDavdGvPvLvDgDtGyGNFNnARr~arkle~~Gaa-G~ClEDk~FPK~NSf~gdrahpLAdi~EFcgki 134 (272)
T TIGR02320 56 TQLVEVVETMSDAVDGVPVLVDGDTGYGNFNNARRLARKLEDRGAA-GVCLEDKVFPKMNSFFGDRAHPLADIEEFCGKI 134 (272)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCH
T ss_conf 9999998643125888016853787987146799999999746863-222035557641334278888788815440410
Q ss_pred CCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHH-----HHCCCCCEEECCCC
Q ss_conf 584560368622100011331233344445554202357588999-----83799859955899
Q gi|254780300|r 209 HDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKL-----KYAKKDALVMHPGP 267 (316)
Q Consensus 209 ~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l-----~~a~~~ai~mHcLP 267 (316)
.-.++...|+|+|+..|+. -+...+..+++|- ..|.-||||||-=-
T Consensus 135 kAcKD~~~DpdFv~VAR~E-------------AlIag~g~dEAL~RA~AYaeAGADAiliHSrk 185 (272)
T TIGR02320 135 KACKDAQRDPDFVVVARVE-------------ALIAGLGLDEALKRAEAYAEAGADAILIHSRK 185 (272)
T ss_pred HEEECCCCCCCEEEEHHHH-------------HHHCCCCHHHHHHHHHHHHHHCHHHHHHHHCC
T ss_conf 0200678997536623047-------------76438986689999999885131245563134
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=22.52 E-value=54 Score=13.56 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=43.5
Q ss_pred HHHHCCCCCCCCCCEEECCCCCCCCHHHHHHH----HHHCCCCEEEECCC-CCCCCCC-CCC---CCCCCCCCHHHCCCC
Q ss_conf 22201222100010010355443301334466----42013420553277-5322211-212---343300584560368
Q gi|254780300|r 147 FAIRHFKGKISNLHIAICGDILHSRVARSDIM----LLNTMGARIRVIAP-ITLLPKD-ISN---MGVEVFHDMQKGLKN 217 (316)
Q Consensus 147 ~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~----~~~~~g~~v~~~~P-~~~~~~~-~~~---~~~~~~~d~~ea~~~ 217 (316)
+|..+..|+-.+..+...||+-++...++.++ .+..-|..|.+..| ..++|++ ... ..+..+. ..++
T Consensus 131 ~~~~d~~g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~a~yqvp~~~----~~ed 206 (218)
T COG3897 131 FTHADLIGSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFLAIYQVPMFR----ELED 206 (218)
T ss_pred EEECCCCCCCCCEEEEEEECEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCC----CCCC
T ss_conf 743133689864038985030028358898899999998579779972899777855440456521476533----4667
Q ss_pred CCEEEEEEE
Q ss_conf 622100011
Q gi|254780300|r 218 VDVIMILRM 226 (316)
Q Consensus 218 aDvv~~~~~ 226 (316)
+.++-++.|
T Consensus 207 ~~vkrttV~ 215 (218)
T COG3897 207 AAVKRTTVW 215 (218)
T ss_pred CCEEEEEEE
T ss_conf 601332335
No 243
>PRK04148 hypothetical protein; Provisional
Probab=22.49 E-value=54 Score=13.56 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCCCCC-----CCCCHHHCCCCCCEE
Q ss_conf 2012221000100103554433013344664201342055327--753222112123433-----005845603686221
Q gi|254780300|r 149 IRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIA--PITLLPKDISNMGVE-----VFHDMQKGLKNVDVI 221 (316)
Q Consensus 149 i~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~--P~~~~~~~~~~~~~~-----~~~d~~ea~~~aDvv 221 (316)
|.++....++.||+-+|=..+-.|+. .++..|+++...- |... .+....|+. +|+---+..++||.|
T Consensus 8 I~~~y~~~~~~kIvEvGIGf~~~vA~----~L~e~g~dv~~~Din~~aV--~~a~~~Gl~~v~DDif~P~l~iY~~a~lI 81 (135)
T PRK04148 8 IARNYPHLKNGKIAELGIGFYFKVAK----KLKESGFDVIVIDINKKAV--EKAKKLGLNAFVDDIFNPNLEIYKNAKLI 81 (135)
T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHH----HHHHCCCCEEEEECCHHHH--HHHHHCCCCEEECCCCCCCHHHHCCCCEE
T ss_conf 99854211287389992366678999----9987499889995765543--22123287637515889988885178879
Q ss_pred EEEEECCH
Q ss_conf 00011331
Q gi|254780300|r 222 MILRMQQE 229 (316)
Q Consensus 222 ~~~~~~~e 229 (316)
|..|-..|
T Consensus 82 YSIRPp~E 89 (135)
T PRK04148 82 YSIRPPRD 89 (135)
T ss_pred EEECCCHH
T ss_conf 98189878
No 244
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=22.26 E-value=55 Score=13.53 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 1000100103554433013344664201342055
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIR 188 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~ 188 (316)
+++|.+++.-| -+||.......+...|+++.
T Consensus 28 ~l~g~~v~IqG---~GnVG~~~a~~L~~~Gakvv 58 (227)
T cd01076 28 GLAGARVAIQG---FGNVGSHAARFLHEAGAKVV 58 (227)
T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEE
T ss_conf 97899999989---88999999999998799599
No 245
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=21.83 E-value=56 Score=13.47 Aligned_cols=62 Identities=27% Similarity=0.515 Sum_probs=39.0
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCEEEEEEECCCCHHHHHH-HHHHHHHCCC
Q ss_conf 7741782238999999999999999964420487752128-9769999607873378999-9798761352
Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQ-GLTQINLFLETSTRTQTSF-EVAGKLLGVH 74 (316)
Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~-gk~~~~lF~kpStRTR~SF-e~A~~~LGg~ 74 (316)
++.|+. +|+++++|..|++.|-.....+. .-+ ...|. +..+.-||--|.. || +.|++-||.-
T Consensus 58 l~~f~~-~~i~~~~L~~ii~~ay~~f~~~~-~~p-l~~l~~~~~vLELFHGPTl----AFKD~a~q~l~~l 121 (460)
T cd01560 58 LSLFIG-DEIPEDDLKSLIDRAYSFFRHPD-IAP-LVQLGDNLYVLELFHGPTL----AFKDMALQFLGRL 121 (460)
T ss_pred HHHHCC-CCCCHHHHHHHHHHHHCCCCCCC-CCC-EEEECCCCEEEEECCCCCC----HHHHHHHHHHHHH
T ss_conf 999705-77999999999999724567776-663-3881498478873228841----4455689999999
No 246
>PRK06443 chorismate mutase; Validated
Probab=21.60 E-value=56 Score=13.46 Aligned_cols=25 Identities=12% Similarity=-0.052 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3013344664201342055327753
Q gi|254780300|r 170 SRVARSDIMLLNTMGARIRVIAPIT 194 (316)
Q Consensus 170 ~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316)
+++..|+..+|++-|.++.+-.|..
T Consensus 113 ~~~pds~e~gcs~~ggh~v~g~~~~ 137 (177)
T PRK06443 113 EDNPDSIEEGCSKAGGHVVIGLPDK 137 (177)
T ss_pred CCCCHHHHHHHHHCCCEEECCCCCC
T ss_conf 5694689976403487084279998
No 247
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=20.91 E-value=59 Score=13.35 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=10.6
Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf 7774178223899999999999999
Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANE 29 (316)
Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~ 29 (316)
+.||.-++.|++.+++..++..+..
T Consensus 41 PK~H~~~l~dl~~~e~~~l~~~~~~ 65 (126)
T cd01275 41 PYRHVPRLEDLTPEEIADLFKLVQL 65 (126)
T ss_pred CCHHCCHHHCCCHHHHHHHHHHHHH
T ss_conf 5533051530999999999999999
No 248
>CHL00194 ycf39 Ycf39; Provisional
Probab=20.80 E-value=59 Score=13.33 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=17.8
Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCC-CCEEEECC
Q ss_conf 10001001035544330133446642013-42055327
Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTM-GARIRVIA 191 (316)
Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~-g~~v~~~~ 191 (316)
.-+|..+...|. ...+..-.+.++..+ |-+..+..
T Consensus 194 ~~~gk~y~L~GP--~a~T~~EIa~l~~~~~Gk~~~i~~ 229 (319)
T CHL00194 194 ETKNKTFPLVGP--KSWNSSEIISLCEQLSGQKAKVTR 229 (319)
T ss_pred CCCCCEEEEECC--CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 758989995498--638999999999998599987786
No 249
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=20.72 E-value=59 Score=13.32 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=48.4
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC------------------CCCCCCCCCCCCCHHHCCCCCCEE
Q ss_conf 00103554433013344664201342055327753222------------------112123433005845603686221
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP------------------KDISNMGVEVFHDMQKGLKNVDVI 221 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~------------------~~~~~~~~~~~~d~~ea~~~aDvv 221 (316)
+|-..|.+ |++=-.-.+..+...+..+.+.+|-.-.. .+-.++++.-.. .+.+++.+|+|
T Consensus 2 ~VYLSGEI-HtdWRe~I~~~~~~~~L~i~F~~PvTdH~~SDdcG~~iLG~e~~~fw~D~kgakiNaiR-tr~~i~~aDiv 79 (144)
T TIGR03646 2 TVYLAGEI-HTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIR-TRKLIEKADVV 79 (144)
T ss_pred EEEECCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHCCHHHCCEE
T ss_conf 28772765-44389999999987699848727888970055513898768987665343004210023-12007358999
Q ss_pred EEEEECCHHHHHHHHHHHHHHCCCCC--CCHHHHHHCCCCCEEECCCCC-CCCCCCCHHH
Q ss_conf 00011331233344445554202357--588999837998599558998-7687447679
Q gi|254780300|r 222 MILRMQQERIPRSLIPSIREYKHVYS--LDEKKLKYAKKDALVMHPGPI-NRNYEISSSV 278 (316)
Q Consensus 222 ~~~~~~~e~~~~~~~~~~~~~~~~~~--v~~~~l~~a~~~ai~mHcLP~-~Rg~Ev~~~v 278 (316)
+.. .+ ++|++ |- .+........+..|+||+--. |.-.||++..
T Consensus 80 vvr-FG------------ekYKQ-WNAAFDAg~a~AlgK~lI~lH~~~~~HaLKEvdaaA 125 (144)
T TIGR03646 80 IAL-FG------------EKYKQ-WNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKA 125 (144)
T ss_pred EEE-EC------------HHHHH-HHHHHHHHHHHHCCCCEEEECCHHCCCHHHHHHHHH
T ss_conf 997-04------------78888-889886889998299779956621023277887888
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=20.65 E-value=57 Score=13.42 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEECCCCCC--CCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC-CCCCCCHHHCC
Q ss_conf 2233222222201222100010010355443--30133446642013420553277532221121234-33005845603
Q gi|254780300|r 139 PSQALLDAFAIRHFKGKISNLHIAICGDILH--SRVARSDIMLLNTMGARIRVIAPITLLPKDISNMG-VEVFHDMQKGL 215 (316)
Q Consensus 139 P~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~--~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~-~~~~~d~~ea~ 215 (316)
|-.++.++.++.+.+. .+..+++.|+.-- +-.+.....-+...|..+.++.-.+++.+-..... -.....+...+
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l 165 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL 165 (254)
T ss_pred HHHHHHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 6999999999998732--58828998999987999999999999983984999885999999999874552689999887
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCC
Q ss_conf 6862210001133123334444555420235758899983799859955899
Q gi|254780300|r 216 KNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGP 267 (316)
Q Consensus 216 ~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP 267 (316)
..+|+++.|-++.+.........+ ||+=......... +|.==+|
T Consensus 166 ~~~dlLIiDDlG~~~~~~~~~~~~------~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 166 KKVDLLIIDDIGYEPFSQEEADLL------FQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred HHCCEEEEECCCCCCCCCHHHHHH------HHHHHHHHHHCCC--CEEECCC
T ss_conf 528989982367766881558799------9999999973054--2020588
No 251
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.59 E-value=59 Score=13.31 Aligned_cols=15 Identities=13% Similarity=-0.137 Sum_probs=7.3
Q ss_pred HHCCCCCHHHHHHHH
Q ss_conf 976997016868775
Q gi|254780300|r 278 VADGSQSIIQYQVEM 292 (316)
Q Consensus 278 v~d~~~s~v~~Qa~N 292 (316)
|+-+|-|.-|+|=.|
T Consensus 408 VLlSPacaSfD~f~n 422 (438)
T PRK03806 408 VLLSPACASLDQFKN 422 (438)
T ss_pred EEECCCCCCCCCCCC
T ss_conf 998974503014249
No 252
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.58 E-value=60 Score=13.30 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCCCCCCCCC
Q ss_conf 3789999798761352111233332101333422479998741367146520321005542---001234211112
Q gi|254780300|r 59 RTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSL---MHKIKGPSIINA 131 (316)
Q Consensus 59 RTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~---a~~~s~ppVINa 131 (316)
...-.++.++..+|...+.++++...-.--+-++ .+-..++|.|++-..+....... +...-+| ||..
T Consensus 16 ~~~~G~~~~A~~~G~~~~v~d~~~d~~~Q~~~i~----~~i~~~vDgIii~p~d~~~~~~~l~~a~~aGIP-VV~~ 86 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGGDDAKQADQID----QAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIP-VVAF 86 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH----HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 9999999999974998999739999999999999----999859999999468714448999999985997-8998
No 253
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=20.56 E-value=60 Score=13.30 Aligned_cols=33 Identities=0% Similarity=0.027 Sum_probs=12.0
Q ss_pred CHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 845603686221000113312333444455542
Q gi|254780300|r 210 DMQKGLKNVDVIMILRMQQERIPRSLIPSIREY 242 (316)
Q Consensus 210 d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~ 242 (316)
.+++.+.++-+=-|-=+|-.+++++......+|
T Consensus 317 ~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~F 349 (475)
T TIGR01125 317 RLREKVPDAVLRTTFIVGFPGETEEDFQELLDF 349 (475)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999755661772246886889987889999999
No 254
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=20.49 E-value=60 Score=13.29 Aligned_cols=18 Identities=22% Similarity=-0.036 Sum_probs=6.3
Q ss_pred CCCCHHHHCCCCCHHHHH
Q ss_conf 744767976997016868
Q gi|254780300|r 272 YEISSSVADGSQSIIQYQ 289 (316)
Q Consensus 272 ~Ev~~~v~d~~~s~v~~Q 289 (316)
.+++.+....-++.+.+|
T Consensus 170 ~~~~y~~~~~~r~~v~q~ 187 (249)
T cd01853 170 TPFSYDRFVAQRSHIVQQ 187 (249)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 722099999999999998
Done!