HHsearch results for GI: 254780300 and protein with PDBid: 1js1_X
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=100.00 E-value=0 Score=594.08 Aligned_cols=294 Identities=20% Similarity=0.244 Sum_probs=263.0
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 7741782238999999999999999964420487752128976999960787337899997987613521112333321-
Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA- 84 (316)
Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~- 84 (316)
|||||+++||+ ||..||++|.++|+.+.++ .+.|+||+++++|+|||||||+|||+|+.+|||+++++++.+|+
T Consensus 1 Mk~~i~i~Dls--di~~ll~~a~~~k~~~~~~---~~~l~gK~va~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~ 75 (324)
T 1js1_X 1 MKKFTCVQDIG--DLKSALAESFEIKKDRFKY---VELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAW 75 (324)
T ss_dssp CCCBSSGGGGC--CHHHHHHHHHHHHHSTTTT---TTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CCCCCCHHHHH--HHHHHHHHHHHHHHCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 98747523389--9999999999998374435---655799889999678971269999999998499699737887632
Q ss_pred -----------CCCCCCCCCHHHHHHHHCCCCEEEECCCC----------CHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf -----------01333422479998741367146520321----------005542001234211112345663122332
Q gi|254780300|r 85 -----------MKKGENIADTIATLNALRPNIIVIRHPYS----------GAVNSLMHKIKGPSIINAGDGTHEHPSQAL 143 (316)
Q Consensus 85 -----------~~kgEs~~Dta~vls~~~~d~iv~R~~~~----------~~~~~~a~~~s~ppVINag~~~~~HP~Q~L 143 (316)
.+||||++||++++|+| +|+|++|++.+ ..+.++++++++| ||| |+|..+||||+|
T Consensus 76 ~~~~~~~~~~~~~k~Es~~DT~~vls~~-~D~iv~R~~~~~~~~~~~~~~~~~~~~a~~s~vP-ViN-g~~~~~HPtQaL 152 (324)
T 1js1_X 76 KLETERGVIMDGDKPEHLLEAIPVMGCY-CDIIGVRSFARFENREYDYNEVIINQFIQHSGRP-VFS-MEAATRHPLQSF 152 (324)
T ss_dssp CEECCSSCCCCSSCCEEHHHHHHHHHHT-CSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSC-EEE-SSCSSCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEECCHHHHHHHCCHHHHHHHHHHHCCCC-EEC-CCCCCCCHHHHH
T ss_conf 1234543000377776499999999861-6425887322134343100057999999852785-347-888766768999
Q ss_pred HHHHHHHCCCCCCCCCCEEECCC---CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCE
Q ss_conf 22222201222100010010355---443301334466420134205532775322211212343300584560368622
Q gi|254780300|r 144 LDAFAIRHFKGKISNLHIAICGD---ILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDV 220 (316)
Q Consensus 144 aDl~Ti~e~~g~l~~l~ia~vGD---~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDv 220 (316)
+|+|||+|++|.++|++++++|+ .+++||++|++.+++++|+++.+++|+++.+.......+++++|+.+++++||+
T Consensus 153 ~Dl~Ti~e~~g~~~~~~~~~~~~~~~~~~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~d~~~a~~~aDv 232 (324)
T 1js1_X 153 ADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADF 232 (324)
T ss_dssp HHHHHHHHHCSSSSCEEEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHCCCCEECCCHHHHHCCCCE
T ss_conf 99999999637655653899984388540104789999998559764531476446530111351221117766337766
Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 10001133123334444555420235758899983799859955899876874476797699701686877569999999
Q gi|254780300|r 221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300 (316)
Q Consensus 221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~Al 300 (316)
||+++|+.|+.... ....++...||||+++|+ ++++++||||||++||+||++||+|+|+|+||+||+||+|+||||
T Consensus 233 V~t~~~~~~~~~~~--~~~~~~~~~y~v~~~ll~-~~~dai~MHpLP~~Rg~EIs~eV~d~p~S~if~QaeNgl~~rmAl 309 (324)
T 1js1_X 233 IYAKNWAAYTGDNY--GQILSTDRNWTVGDRQMA-VTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVV 309 (324)
T ss_dssp EEECCCCCCSTTCT--TCCCCCCTTSSBCHHHHT-TSSSCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCHH--HHHHHHHCCCEECHHHHC-CCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHCCHHHHHHH
T ss_conf 89988886367307--779987418725499874-799999979999988866377675689872999986209999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999778142
Q gi|254780300|r 301 IKELLENQNK 310 (316)
Q Consensus 301 L~~~l~~~~~ 310 (316)
|+++|+|-..
T Consensus 310 L~~lL~n~~~ 319 (324)
T 1js1_X 310 LKRLLENLPH 319 (324)
T ss_dssp HHHHHHTSCS
T ss_pred HHHHHHCCCC
T ss_conf 9999843986