HHsearch results for GI: 254780300 and protein with PDBid: 1ml4_A
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=100.00 E-value=0 Score=635.63 Aligned_cols=298 Identities=33% Similarity=0.461 Sum_probs=275.9
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCC
Q ss_conf 7777741782238999999999999999964420487752128976999960787337899997987613521112-333
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVINI-NTK 81 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l-~~~ 81 (316)
+|.+||||+++||+++|+..||++|.++|+.+.++. ..++|+||+++++|+|||||||+|||+|+.+|||+++++ +++
T Consensus 2 ~~~~r~~L~i~dls~~ei~~ll~~A~~lk~~~~~~~-~~~~l~gk~v~llF~~pStRTR~SFe~A~~~LGg~~i~~~~~~ 80 (308)
T 1ml4_A 2 DWKGRDVISIRDFSKEDIETVLATAERLERELKEKG-QLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEAS 80 (308)
T ss_dssp CCTTCCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHS-SCCTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEESCGG
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 899988565001899999999999999998776068-8776799889998348975378999999997599278667853
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316)
.+++++|||++||++|+|+| +|+|++|++.++.+.++++++++| |||||+|..+||||+|+|++||+|++|+++|+||
T Consensus 81 ~~~~~~~Es~~Dta~vls~~-~D~iviR~~~~~~~~~~a~~~~vP-VINAg~~~~~HPtQ~L~Dl~Ti~e~~g~l~glki 158 (308)
T 1ml4_A 81 TSSVKKGESLRDTIKTVEQY-CDVIVIRHPKEGAARLAAEVAEVP-VINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKI 158 (308)
T ss_dssp GSGGGGTCCHHHHHHHHTTT-CSEEEEEESSTTHHHHHHHTCSSC-EEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEE
T ss_pred CCCCCCCCCHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHCCCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 12157875099999875314-855999723000589987558976-7757779876807899868617563388357779
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
Q ss_conf 10355443301334466420134205532775322211-------21234330058456036862210001133123334
Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316)
Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316)
+|+||+.|+||+||++.+++.+|+++++++|+++.+.. ..+..+.+++|++++++++|+||+++||.|++...
T Consensus 159 ~~vGd~~~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~~~~~~~ 238 (308)
T 1ml4_A 159 GLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDE 238 (308)
T ss_dssp EEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCCEEECCCHHHHHCCCCEEECCEECCCCCCHH
T ss_conf 86458764412888999998769839997964754878899999971983021289899630575220220023445258
Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4445554202357588999837998599558998768744767976997016868775699999999999778
Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316)
.++.+++.+||||.++|++|+++++|||||| ||+||+++|+|+|+|+||+||+||+|+|||||+|+||-
T Consensus 239 --~~~~~~~~~~~v~~~~l~~a~~~~i~mHcLP--Rg~Ei~~~v~d~~~s~v~~QaeNrl~v~~AlL~~llG~ 307 (308)
T 1ml4_A 239 --QEYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV 307 (308)
T ss_dssp --HHHHTTTTCCCBCTTGGGGSCTTCEEECCSC--CSSSBCGGGGGSTTBCHHHHHHTHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHCCCCCCHHHHHHCCCCCEEECCCC--CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --9999985066579999971699989969999--97612486657874579999972199999999998676