HHsearch results for GI: 254780300 and protein with PDBid: 1vlv_A
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=100.00 E-value=0 Score=617.33 Aligned_cols=299 Identities=23% Similarity=0.294 Sum_probs=273.6
Q ss_pred CC-CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99-77777417822389999999999999999644204877521289769999607873378999979876135211123
Q gi|254780300|r 1 MY-SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79 (316)
Q Consensus 1 m~-~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~ 79 (316)
|. ++.+||||+++||+++|++.||++|.++|..+... ...+.|+||+++++|+|||||||+|||+|+.+|||++++++
T Consensus 13 m~~~l~gk~llsi~dls~~ei~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~ 91 (325)
T 1vlv_A 13 MSVNLKGRSLLTLLDFSPEEIRYLLDISKQVKMENRSK-LRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHPIFLS 91 (325)
T ss_dssp CCCCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHT-CCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf 56778899808511089999999999999997642247-77645799889998568975378999999998398589746
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 33321013334224799987413671465203210055420012342111123456631223322222220122210001
Q gi|254780300|r 80 TKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNL 159 (316)
Q Consensus 80 ~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l 159 (316)
+.+|+++||||++||++|+++| +|++++|++.++.+..+++++++| |||||++ .+||||+|+|+|||+|.+|.++|+
T Consensus 92 ~~~ss~~kgEsl~Dt~~~ls~y-~D~ivvR~~~~~~~~~~a~~~~vP-VINa~~~-~~HPtQaLlDl~Ti~e~~g~l~gl 168 (325)
T 1vlv_A 92 PNDIHLGAKESLEDTARVLGRM-VDAIMFRGYKQETVEKLAEYSGVP-VYNGLTD-EFHPTQALADLMTIEENFGRLKGV 168 (325)
T ss_dssp TTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSCHHHHHHHHHHHCSC-EEESCCS-SCCHHHHHHHHHHHHHHHSCSTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHCCCC-EECCCCC-CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6433567885368999999851-651577404420466666506764-1417888-777899999999999983974567
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf 00103554433013344664201342055327753222112-----------1234330058456036862210001133
Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316)
Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316)
+|+|+||+. +++++|++.+++++|+++++++|+++.|+.. .+..+++++++++|+++|||||+++|+.
T Consensus 169 ~i~~vGd~~-~~~~~s~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvyt~~~~~ 247 (325)
T 1vlv_A 169 KVVFMGDTR-NNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWAS 247 (325)
T ss_dssp EEEEESCTT-SHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC-
T ss_pred CCEEECCCC-CCEEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEEEHHHHH
T ss_conf 725766875-5375319999997598499973843388889999876554423764201069999970698664016667
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHH-CCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 123334444555420235758899983-79985995589987687447679769970168687756999999999997
Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305 (316)
Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~-a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l 305 (316)
++.... .....+++.+||||.++|+. ++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||.++|
T Consensus 248 ~~~~~~-~~~~~~~~~~y~v~~~~l~~~ak~~~i~mHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vr~AlL~~lL 324 (325)
T 1vlv_A 248 MGEEDK-EKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 324 (325)
T ss_dssp ----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHCCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 545466-68998760375056999972189998996998489984828878569987399998725999999999986