HHsearch results for GI: 254780300 and protein with PDBid: 3gd5_A
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421}
Probab=100.00 E-value=0 Score=613.33 Aligned_cols=297 Identities=25% Similarity=0.336 Sum_probs=272.8
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333
Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316)
Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316)
+-.+||||+++||+++||..||++|.++|+.+ ..+.|+||+++++|+|||||||+|||+|+.+|||+++++++++
T Consensus 10 ~~~~k~ll~i~dls~~ei~~ll~~A~~lk~~~-----~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~vi~~~~~~ 84 (323)
T 3gd5_A 10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGE-----RVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSN 84 (323)
T ss_dssp CCCCSCBSSGGGSCHHHHHHHHHHHHHHHHTS-----SCCCCTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEC----
T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 66688874222189999999999999987367-----6777899989999668971169999999998599199635422
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 21013334224799987413671465203210055420012342111123456631223322222220122210001001
Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA 162 (316)
Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316)
|+++||||++||++++++| .|++++|++.++.+.++++++++| |||||++ .+||||+|+|++||+|.+|.++|++|+
T Consensus 85 ss~~kgEs~~Dt~~~ls~~-~d~iv~R~~~~~~~~~~a~~s~vP-VINag~~-~~HPtQaLlDl~Ti~e~~g~l~gl~i~ 161 (323)
T 3gd5_A 85 TQVGRGEPVRDTARVLGRY-VDGLAIRTFAQTELEEYAHYAGIP-VINALTD-HEHPCQVVADLLTIRENFGRLAGLKLA 161 (323)
T ss_dssp ------CCHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHHCSC-EEEEECS-SCCHHHHHHHHHHHHHHHSCCTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHCC-CHHHHEECCHHHHHHHHHHCCCCC-EEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 4457763037799998522-114321000056799985217977-6858887-416899998899999985874688799
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH
Q ss_conf 0355443301334466420134205532775322211-----------21234330058456036862210001133123
Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316)
Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316)
|+|| ++||++|++.+++++|+++.+++|+++.+.. ..+..+.+++|++++++++|+||+++|++++.
T Consensus 162 ~vGd--~~~v~~S~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviyt~~~~~~~~ 239 (323)
T 3gd5_A 162 YVGD--GNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQ 239 (323)
T ss_dssp EESC--CCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC----
T ss_pred EECC--CCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHCCCCEEEEEHHHHHCC
T ss_conf 9788--65534559999864698089973876688789999999987633881000278999955798766311323101
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3344445554202357588999837998599558998768744767976997016868775699999999999778142
Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNK 310 (316)
Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~ 310 (316)
.... ....+|+.+||||+++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++||++.-
T Consensus 240 ~~~~-~~~~~~~~~y~vt~~~l~~a~~~~i~MHplP~~Rg~EI~~~V~d~~~s~~~~Qa~Ngl~vr~AlL~~llgg~~~ 317 (323)
T 3gd5_A 240 EAET-QHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMGGREG 317 (323)
T ss_dssp ------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHH-HHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0334-56887640002529999537989899898999888534878865998679999971199999999999778967