HHsearch results for GI: 254780300 and protein with PDBid: 3grf_A

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=100.00  E-value=0  Score=621.39  Aligned_cols=299  Identities=23%  Similarity=0.304  Sum_probs=273.5

Q ss_pred             CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC-CC
Q ss_conf             77774178223899999999999999996442048775212897699996078733789999798761352111233-33
Q gi|254780300|r    4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT-KN   82 (316)
Q Consensus         4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~-~~   82 (316)
                      ..+||||+++||+++|+..||++|.++|+.+.+.   .+.|+||+++++|+|||||||+|||+|+.+|||+++++++ .+
T Consensus         5 ~~~khll~i~dls~~ei~~ll~~A~~~k~~~~~~---~~~l~~k~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~~   81 (328)
T 3grf_A            5 KQTRHLLTISALCPKELAYLIDRALDMKKNPAKY---TARAANKTLLAFFAKPSLRTRVSLETAMTRLGGHAIYYELGAN   81 (328)
T ss_dssp             CCSCCBSSGGGSCHHHHHHHHHHHHHHHHCGGGG---TTTTTTCEEEEEESSCCHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred             CCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             8788715143199999999999999987374445---6556898899996578731699999999985994786673201


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------C
Q ss_conf             210133342247999874136714652032100554200123421111234566312233222222201222-------1
Q gi|254780300|r   83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG-------K  155 (316)
Q Consensus        83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-------~  155 (316)
                      |+++||||++||++++++| +|++++|++.++.+.++++++++| |||||++ ++||||+|+|++||+|++|       .
T Consensus        82 s~~~kgEs~~Dt~~~ls~~-~d~ivvR~~~~~~~~~~a~~~~vp-VINa~~~-~~HPtQaL~Dl~Ti~e~~g~~~~~~~~  158 (328)
T 3grf_A           82 SNVGGKETVQDTAEVFSRM-VDICTARLATKEMMREMAQHASVP-CINALDD-FGHPLQMVCDFMTIKEKFTAAGEFSNG  158 (328)
T ss_dssp             -------CHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHCSSC-EEESSCS-SCCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred             CCCCCCEEHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHCCCC-EECCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             2367862199999987334-653456525033566777507862-3547765-668269999999999984653334675


Q ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC---------------CCCCCCCCCCCHHHCCCCCCE
Q ss_conf             00010010355443301334466420134205532775322211---------------212343300584560368622
Q gi|254780300|r  156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD---------------ISNMGVEVFHDMQKGLKNVDV  220 (316)
Q Consensus       156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~---------------~~~~~~~~~~d~~ea~~~aDv  220 (316)
                      +++++|+|+||. ++||++|++.+++++|+++++++|+++.+..               ..+.++++++|+++++++|||
T Consensus       159 ~~~l~i~~~gd~-~~~v~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDv  237 (328)
T 3grf_A          159 FKGIKFAYCGDS-MNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             GGGCCEEEESCC-SSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             CCCCEEEECCCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCE
T ss_conf             136247632777-6542679999999779969996365335576699999999998763259839999679999617998


Q ss_pred             EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             10001133123334444555420235758899983799859955899876874476797699701686877569999999
Q gi|254780300|r  221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI  300 (316)
Q Consensus       221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~Al  300 (316)
                      ||+++||+|++.++......+|+.+||||.++|++++++++||||||+|||+||+++|+|+|+|+||+||+||+|+||||
T Consensus       238 vy~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vrmAl  317 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSVCYDEAGNRLHSAMAV  317 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHHHTSTTBCHHHHHHHHHHHHHHH
T ss_pred             EEEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             98501120333055579999876424643999963699998989989998880188885798756999997209999999


Q ss_pred             HHHHHCCCC
Q ss_conf             999977814
Q gi|254780300|r  301 IKELLENQN  309 (316)
Q Consensus       301 L~~~l~~~~  309 (316)
                      |+++|++..
T Consensus       318 L~~lL~~~k  326 (328)
T 3grf_A          318 LDFFLHDCK  326 (328)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHHHHHCC
T ss_conf             999984166