PSIBLAST alignment of GI: 254780300 and protein with PDB id: 1ml4

gi|28948651|pdb|1ML4|A Chain A, The Pala-Liganded Aspartate Transcarbamoylase Catalytic Subunit From Pyrococcus Abyssi Length = 308

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/312 (28%), Positives = 142/312 (45%), Gaps = 13/312 (4%)

Query: 2   YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQ 61
             +   + ++++D S +D+  +L  A    +++          +G     LF E STRT+
Sbjct: 1   MDWKGRDVISIRDFSKEDIETVLATAERL-ERELKEKGQLEYAKGKILATLFFEPSTRTR 59

Query: 62  TSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMH 121
            SFE A   LG  VI     +++  K                ++IVIRHP  GA      
Sbjct: 60  LSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAE 119

Query: 122 KIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLN 181
             + P +INAGDG+++HP+Q LLD + I+   G+I  L I + GD+ + R   S    L 
Sbjct: 120 VAEVP-VINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALT 178

Query: 182 TMGARIRVIAPITLLPKDI-------SNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234
                + +I+P  L              M V     ++  +  +DV+ + R+Q+ER P  
Sbjct: 179 FYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFP-- 236

Query: 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGV 294
                 + K  Y ++ K L+ AK +  +MHP P  R  EI   V +   +I   QV  GV
Sbjct: 237 DEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGV 294

Query: 295 AVRMAIIKELLE 306
            VRMA++  +L 
Sbjct: 295 PVRMALLALVLG 306