RPSBLAST alignment of GI: 254780300 and protein with PDBid: 1js1

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* Length = 324

 Score =  195 bits (496), Expect = 1e-50
 Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 32/323 (9%)

Query: 8   NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
            F  V+D+   D+   L  + E   KK  F       +  T + +F  +S RT+ S + A
Sbjct: 3   KFTCVQDIG--DLKSALAESFEI--KKDRFKYVEL-GRNKTLLMIFFNSSLRTRLSTQKA 57

Query: 68  GKLLGVHVININTKNSAMK------------KGENIADTIATLNALRPNIIVIRHPYSGA 115
              LG++VI ++    A K            K E++ + I  +     +II +R      
Sbjct: 58  ALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCY-CDIIGVRSFARFE 116

Query: 116 VNSLMHKIKGP--------SIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC--- 164
                +               + + +    HP Q+  D   I  +K       +      
Sbjct: 117 NREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPH 176

Query: 165 GDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224
              L   V  S    +N       +  P              V +D  K  +  D I   
Sbjct: 177 PRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAK 236

Query: 225 RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQS 284
                         I      +++ ++++     +A  MH  P+ RN  ++  V +  QS
Sbjct: 237 NWA--AYTGDNYGQILSTDRNWTVGDRQMA-VTNNAYFMHCLPVRRNMIVTDDVIESPQS 293

Query: 285 IIQYQVEMGVAVRMAIIKELLEN 307
           I+  +          ++K LLEN
Sbjct: 294 IVIPEAANREISATVVLKRLLEN 316