RPSBLAST alignment of GI: 254780300 and protein with PDBid: 1vlv
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Length = 325
Score = 171 bits (434), Expect = 2e-43
Identities = 61/310 (19%), Positives = 118/310 (38%), Gaps = 18/310 (5%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +T+ D S +++ YLLD + + + ++ T R +G+T +F + STRT+ +FE A
Sbjct: 21 SLLTLLDFSPEEIRYLLDISKQ-VKMENRSKLRTERFKGMTLAMIFEKRSTRTRLAFETA 79
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
G H I ++ + + E++ DT L + I+ +
Sbjct: 80 FAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETV---EKLAEYSGV 136
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+ G HP+QAL D I G++ + + VA S ++ MG
Sbjct: 137 PVYNGLTDEFHPTQALADLMTIEENFGRLKG-VKVVFMGDTRNNVATSLMIACAKMGMNF 195
Query: 188 RVIAPITLLPKDISNMGVEVF-----------HDMQKGLKNVDVIMILRMQQERIPRSLI 236
P L P+ + ++++ L DV+ +
Sbjct: 196 VACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVY-TDVWASMGEEDKE 254
Query: 237 PSIREYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVA 295
Y ++E+ ++ K + + MH P + E++ V +G QS + + E
Sbjct: 255 KERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKH 314
Query: 296 VRMAIIKELL 305
A++ L
Sbjct: 315 TIKAVMIATL 324