HHsearch alignment for GI: 254780301 and conserved domain: cd01304
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.92 E-value=1.6e-24 Score=176.10 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=66.7
Q ss_pred EECCEEECCCCCEE-EEEEEEEECCEEEEECCCCCCCCCCCCCEEEECCCCEEECCEEECCCCCCCCC------------
Q ss_conf 96429999888850-00108997999998317865566678877998879889517271411478999------------
Q gi|254780301|r 6 LNNTRIIDPSRDID-EVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSP------------ 72 (431)
Q Consensus 6 I~n~~iid~~~~~~-~~~~I~I~~gkI~~Ig~~~~~~~~~~~~~vID~~G~~v~PGlID~H~Hl~~~~------------ 72 (431)
T Consensus 1 IknG~V~DP~ngi~Ge~~DI~I~DGkIV~~~s~------~~~a~vIDa~G~vVMpGGID~HsHIaG~KVN~gR~~~PEd~ 74 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSG------AKPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDH 74 (541)
T ss_pred CCCCEEECCCCCCCCCEEEEEEECCEEECCCCC------CCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 998789599888888465688878989756778------88885896899888368123244656786360111177675
Q ss_pred ----------------CCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf ----------------83114378899998707873212454
Q gi|254780301|r 73 ----------------DEYSKNITTLSKEAVAGGITSIILMP 98 (431)
Q Consensus 73 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
T Consensus 75 ~~~~~~~~~~~~~~~G~~vPst~~tGyrYA~MGYTtv~EaA~ 116 (541)
T cd01304 75 RRDPVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAM 116 (541)
T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 315444566655888875786568778998738720115556