HHsearch alignment for GI: 254780301 and conserved domain: cd01316
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=99.97 E-value=8.4e-29 Score=203.64 Aligned_cols=333 Identities=25% Similarity=0.357 Sum_probs=159.0
Q ss_pred CEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf 88951727141147899983114378899998707873212454556643331667777677664310122321000134
Q gi|254780301|r 55 LVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTS 134 (431)
Q Consensus 55 ~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (431)
T Consensus 2 ~lvlPG~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a-~~~~~~d~~~~~~~~- 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLA-QAKARCDYAFSIGAT- 79 (344)
T ss_pred EEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEEEEC-
T ss_conf 698268880057779999877464999999998479779977999989979999999999974-317732112688852-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43222222210000011222234333222211012456765421012222333222222211246753100122221000
Q gi|254780301|r 135 NMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSI 214 (431)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (431)
T Consensus 80 ~~~~~~l~~l~~~-~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~----~------------~~~~p--------i~~~ 131 (344)
T cd01316 80 STNAATVGELASE-AVGLKFYLNE---TFSTLILDKITAWASHFNA----W------------PSTKP--------IVTH 131 (344)
T ss_pred CCCHHHHHHHHHC-CCCEEEEECC---CCCHHHHHHHHHHHHHHHH----C------------CCCCC--------CHHH
T ss_conf 6767899998754-6838999635---5635777799999999863----6------------45697--------3142
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01235555665432000111222333112110011110012223222222222223222211100000011122222222
Q gi|254780301|r 215 SETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERM 294 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (431)
T Consensus 132 aE~~~~~~~l~la~~~~~~lHi~HiSt~~~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~--~~~~k~~PPLR~~~d~~ 209 (344)
T cd01316 132 AKSQTLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP--RGQYEVRPFLPTREDQE 209 (344)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH--CCCCCCCCCCCCHHHHH
T ss_conf 2389999999999987998999946887799999999872897478634554208775763--35987288999978999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 22222334431111344454543222234333222222210136788867651698999999988151799809999724
Q gi|254780301|r 295 SMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPGGTL 374 (431)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gls~~eal~~aT~npA~~lgl~~G~I 374 (431)
T Consensus 210 aL~~~l--~~ID~IaSDHaP~~~~~K~~--~~~~~G~~GlEt~lp~~~~~v~~g~lsl~~lv~~~s~nPAki~gl~~--- 282 (344)
T cd01316 210 ALWENL--DYIDCFATDHAPHTLAEKTG--NKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPP--- 282 (344)
T ss_pred HHHHHH--HCCCEEECCCCCCCHHHHCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC---
T ss_conf 999754--22778971677657655022--46999856277689999999983997899999999498999728898---
Q ss_pred CCCCCCCEEEECCCCCEEECHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEE
Q ss_conf 6687267899869897885377852024886567727822889999999999862
Q gi|254780301|r 375 QTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYTL 429 (431)
Q Consensus 375 ~~Gk~ADlvi~D~~~~~~i~~~~~~s~~~~tp~~g~~~~g~V~~tiv~G~iVy~~ 429 (431)
T Consensus 283 ---~~g~~v~vD~~~~~~i~~~~~~Sk~~~spfeG~~l~G~v~~ti~rG~~v~~~ 334 (344)
T cd01316 283 ---QSDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFID 334 (344)
T ss_pred ---CCCCEEEECCCCCEEECHHHCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEC
T ss_conf ---8898899879997898814272758867745988888999999999999999