HHsearch alignment for GI: 254780301 and conserved domain: cd01318
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=7.4e-36 Score=249.10 Aligned_cols=360 Identities=26% Similarity=0.344 Sum_probs=178.7
Q ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECC
Q ss_conf 98895172714114789998311437889999870787321245455664333166777767766431012232100013
Q gi|254780301|r 54 GLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLT 133 (431)
Q Consensus 54 G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (431)
T Consensus 1 G~~v~PG~ID~hvH~r~pg~~~~e~~~s~s~AA~aGGvTtv~~mPnt~p~~~~~~~~~~~~-~~a~~~~~vd~~~~~~~t 79 (361)
T cd01318 1 GLLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKL-RLAAAKSVVDYGLYFGVT 79 (361)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH-HHHCCCCCEEEEEEEEEC
T ss_conf 9898368487241469999775150999999998489538998999989989999999999-973558810488886204
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44322222221000001122223433322221101245676542101222233322222221124675310012222100
Q gi|254780301|r 134 SNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPS 213 (431)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (431)
T Consensus 80 ~~~~---~~~l~~~g~~~~k~f~~~~~-~~~~~~~~~l~~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~--~~~~~~~p~ 153 (361)
T cd01318 80 GSED---LEELDKAPPAGYKIFMGDST-GDLLDDEETLERIFAEGSVLVTFHAEDEDRLRENRKELKGE--SAHPRIRDA 153 (361)
T ss_pred CCCH---HHHHHHHHHCCEEEEEECCC-CCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHCCHHCCCCC--CCCCCCCCH
T ss_conf 7514---89999734164458860578-75102399999999707995999268988884301033431--235678989
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00123555566543200011122233311211001111001222322222222222322221110000001112222222
Q gi|254780301|r 214 ISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETER 293 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (431)
T Consensus 154 ~aE~~av~r~l~la~~~g~~~hi~hvSt~~~l~~i~~a~~---~vt~et~ph~L~l~~~~~~~~~~~~k~~PPLR~~~dr 230 (361)
T cd01318 154 EAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAKP---GVTVEVTPHHLFLDVEDYDRLGTLGKVNPPLRSREDR 230 (361)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC---CCEEEECHHHHCCCHHHHCCCCCCEEECCCCCCHHHH
T ss_conf 9999999999999998599689994088999999997599---9658852365427813431568716635998977899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 22222233443111134445454322223433322222221013678886765169899999998815179980999-97
Q gi|254780301|r 294 MSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLP-GG 372 (431)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gls~~eal~~aT~npA~~lgl~-~G 372 (431)
T Consensus 231 ~aL~~~l~~G~Id~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~lv~~g~l~l~~~v~~~s~nPAki~gl~~kG 310 (361)
T cd01318 231 KALLQALADGRIDVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKG 310 (361)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999986599649972898889898368977577875109889999999987288149999999968899994989888
Q ss_pred EECCCCCCCEEEECCCCCEEECHHHHHCCCCCCCCCCEEEEEEEEEEEECC
Q ss_conf 246687267899869897885377852024886567727822889999999
Q gi|254780301|r 373 TLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISG 423 (431)
Q Consensus 373 ~I~~Gk~ADlvi~D~~~~~~i~~~~~~s~~~~tp~~g~~~~g~V~~tiv~G 423 (431)
T Consensus 311 ~i~~G~dADlvl~Dp~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~~G 361 (361)
T cd01318 311 RIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred CCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 578899377899949997898825463758867837988888999999086