PSIBLAST alignment of GI: 254780301 and protein with PDB id: 1v4y
>gi|48425875|pdb|1V4Y|A Chain A, The Functional Role Of The Binuclear Metal Center In D- Aminoacylase. One-Metal Activation And Second-Metal Attenuation Length = 496
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 51/474 (10%), Positives = 107/474 (22%), Gaps = 59/474 (12%)
Query: 3 SFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGII 62
++L+ +ID + + + V I A G + ++ D G V PG I
Sbjct: 22 DYILSGGTVIDGTNAPGRLADVGVRGDRIAAVG----DLSASSARRRIDVAGKVVSPGFI 77
Query: 63 DARVTLTGSPDEYSK-------------NITTLSKEAVAGGITSIILMPLGMSSFLDEYT 109
D+ ++ A + L +
Sbjct: 78 DSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFA 137
Query: 110 FIKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLL 169
LE +R S + + ++R + +Q+ +
Sbjct: 138 RFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAI 197
Query: 170 NSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQH 229
A A A + + + G+ A + G + R
Sbjct: 198 GISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATAMRDEGEHIVQALEETFRIGRELDV 257
Query: 230 TGGHYHA-------------------------------SVISIPQSIALIKHAKAHNTKA 258
H ++
Sbjct: 258 PVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAGRTL 317
Query: 259 TCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMD 318
+ + E+ K + E + + + + P +
Sbjct: 318 ITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIG 377
Query: 319 TKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNL-PGGTLQTG 377
+ LP E + L+ + ++ A F L G +Q G
Sbjct: 378 SDGLPHDERPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERGQVQPG 437
Query: 378 TAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYTLES 431
AD+ + D + + Y++G V+ +S
Sbjct: 438 YYADLVVFDP--ATVADSATFEHP--------TERAAGIHSVYVNGAAVWEDQS 481